BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037499
(262 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 160/261 (61%), Positives = 200/261 (76%), Gaps = 6/261 (2%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN ++P +PFRLASLLRLQKDPKLALQLFKNPNP P KPFRY+LL YDLIITK
Sbjct: 1 MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITK 54
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGRAKMF+E+Q+IL QLK +T P+E +FC++I+FYGRARL E+AL++ E+ SF VQR
Sbjct: 55 LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS+N+LL+ L C D+M +LF +EK DAC+YN+L+ G S RL+DA KVFD
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFD 174
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM R + P ++TFG LIYG CL LR+ EA KLK DM++VY V P+A ++ASLIKG+C
Sbjct: 175 EMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKN 234
Query: 241 GELSLALGFKEEMVRNKIEMD 261
GELSLA K+EM+RNKIE+D
Sbjct: 235 GELSLAFRLKKEMIRNKIELD 255
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P I+ ++I + L A ++ EM ++ ++TL++ + G+ +
Sbjct: 216 RVYPNAYIYASLIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEA 275
Query: 142 TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+++ M E+ PD +YN++++ + E A+++ DEM+++ +P ++++ ++
Sbjct: 276 LGVWEDMKERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRE 335
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
L E + EA L EDM R PD + L G C + A +EM+
Sbjct: 336 LFEEGKRGEANDLFEDMPR-RGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMI 388
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L +A +E + +K + P+ + + +I+ + + + E A ++ DEM
Sbjct: 259 YSTLISGLFKAGRKEEALGVWEDMK-ERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEM 317
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V S+N +L + GK DLF+ M + +PD SY IL G +
Sbjct: 318 VEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQF 377
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
++A + DEM+ + P + + LC
Sbjct: 378 KEAAFILDEMIFKGFVPCSASICKFVNRLC 407
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 149/260 (57%), Positives = 196/260 (75%), Gaps = 4/260 (1%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M KP SPFRL+SLLRLQKDP LALQLF NPNP + ++P KPFRY+LL YDLII+K
Sbjct: 69 MKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNP----SSSEPPKPFRYSLLSYDLIISK 124
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGRAKMFDE+++IL QLK +TR P E+IFCNVI+FYGRA L + A QVF+ + SF +R
Sbjct: 125 LGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKR 184
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LL A+L ++++MT +F + Y SPDAC++NIL+H + L+ W VFD
Sbjct: 185 TVKSVNSLLAALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFD 244
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM KR ++P +VTFGTLIYGL L ++ EAL+LKEDM++VY +KP+A ++ +LIKG C V
Sbjct: 245 EMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGV 304
Query: 241 GELSLALGFKEEMVRNKIEM 260
GEL+ A KEEMV + +++
Sbjct: 305 GELNFAFKLKEEMVTSNVKL 324
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + +I L E ++ + + P I+ +I + L A ++
Sbjct: 254 NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKL 313
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM + NV+ ++TL++A+ G+ + ++D+ + M E PD +YN +++G
Sbjct: 314 KEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCK 373
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A +V DEM+++ +P + +F T+I LC E ++D+A+ L EDM R PD
Sbjct: 374 ENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPR-RGCPPDVL 432
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ + GLC + +L A +EM+
Sbjct: 433 SYRIIFDGLCEMMQLKEATSILDEMI 458
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L + +EV IL ++ + P+ + + +I+ + + LE A +V DEM
Sbjct: 329 YSTLISALFKHGRKEEVSDILREMGENG-CKPDTVTYNAIINGHCKENDLESAHRVMDEM 387
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V SFNT++ + GK+D+ DL + M + PD SY I+ G +L
Sbjct: 388 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 447
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
++A + DEM+ + P + L+ LC E ++
Sbjct: 448 KEATSILDEMIFKGYVPRNESINKLVDRLCQECNME 483
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 200/262 (76%), Gaps = 8/262 (3%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLLRLQ DPKLALQLF+NPNP+P KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGR++MF E++QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ + F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LLNA+L C + ++ + ++K+ +PD C+YN+L++ C S L DAW VFD
Sbjct: 113 TVKSLNSLLNALLKCKEFEKFDGILSGIDKFATPDVCTYNVLINACCSSGSLGDAWNVFD 172
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EML++ + P +VTFGTLI GLC + R+DEA +LKEDM++V+NVKP+A V+ASL+KGLC V
Sbjct: 173 EMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRV 232
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
ELSLA K+EMV NK+ +D+
Sbjct: 233 NELSLAFELKKEMVANKLRLDS 254
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 2/206 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + +I+ L DE ++ + V P ++ +++ R L A ++
Sbjct: 182 NVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFEL 241
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM + ++ ++TL+ A+ G+ D + + + M E PD +YN ++ G
Sbjct: 242 KKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCN 301
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E A+ V +EM+ + +P ++++ +I GLC E + EA L EDM R PD
Sbjct: 302 EKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPR-RGCTPDVG 360
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ L GLC + + A +EMV
Sbjct: 361 SYRILFDGLCEGMQFNEAAFILDEMV 386
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + DEV +L +++ + P+ + + +IS + + E A V +EM
Sbjct: 257 YSTLIAALFKVGRKDEVFVVLEEMRENG-CKPDTVTYNAMISGFCNEKDFEAAYGVLEEM 315
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + V S+N +++ + GK DLF+ M + +PD SY IL G +
Sbjct: 316 VAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A + DEM+ + P + + LC E ++ K+ +++ + DA A
Sbjct: 376 NEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLVKGNVIDGDAWSLA- 434
Query: 233 LIKGLCAVGELS 244
+ +C +LS
Sbjct: 435 -VSKVCKKEKLS 445
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/262 (59%), Positives = 201/262 (76%), Gaps = 8/262 (3%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLLRLQ PKLALQLF+NPNP+P KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNGPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGR++MF E++QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ + F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LLNA+L C + ++ + ++K+ +P+ C+YNIL++ C +S RL DAW VFD
Sbjct: 113 TVKSLNSLLNALLNCKEFEKFDGILSGIDKFATPNVCTYNILINACCLSGRLGDAWNVFD 172
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EML++ + P +VTFGTLI GLC + R+DEA +LKEDM++V+NVKP+A V+ASL+KGLC V
Sbjct: 173 EMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRV 232
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
ELSLA K+EMV NK+ +D+
Sbjct: 233 NELSLAFELKKEMVANKLRLDS 254
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 2/206 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + +I+ L R DE ++ + V P ++ +++ R L A ++
Sbjct: 182 NVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFEL 241
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM + ++ ++TL+ A+ G+ D + + + M E PD +YN ++ G
Sbjct: 242 KKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCN 301
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E A+ V +EM+ + +P ++++ +I GLC E + EA L EDM R PD
Sbjct: 302 EKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPR-RGCTPDVG 360
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ L GLC + + A +EMV
Sbjct: 361 SYRILFDGLCEGMQFNEAAFILDEMV 386
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
N+ Y+++I + + + ++ KH V P + F +IS R L+ A
Sbjct: 147 NVCTYNILINACCLSGRLGDAWNVFDEMLRKH---VCPNVVTFGTLISGLCRDSRLDEAS 203
Query: 108 QVFDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP----DACSYNIL 162
++ ++M FNV+ + +L+ + +++ ++ F++ ++ V+ D+ Y+ L
Sbjct: 204 RLKEDMVKVFNVKPNAFVYASLMKGLC---RVNELSLAFELKKEMVANKLRLDSGIYSTL 260
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ R ++ + V +EM + +P VT+ +I G C E + A + E+M+ V
Sbjct: 261 IAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMV-VKG 319
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KPD + +I GLC G+ A E+M R D
Sbjct: 320 CKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPD 358
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + DEV +L +++ + P+ + + +IS + + E A V +EM
Sbjct: 257 YSTLIAALFKVGRKDEVFVVLEEMRENG-CKPDTVTYNAMISGFCNEKDFEAAYGVLEEM 315
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V S+N +++ + GK DLF+ M + +PD SY IL G +
Sbjct: 316 VVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQF 375
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+A + DEM+ + P + + LC
Sbjct: 376 NEAAFILDEMVFKGYAPKSASXTKFVEALC 405
>gi|224161575|ref|XP_002338346.1| predicted protein [Populus trichocarpa]
gi|222871947|gb|EEF09078.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 296 bits (757), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 144/236 (61%), Positives = 180/236 (76%), Gaps = 6/236 (2%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN ++P +PFRLASLLRLQKDPKLALQLFKNPNP P KPFRY+LL YDLIITK
Sbjct: 1 MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPK------TPSKPFRYSLLSYDLIITK 54
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGRAKMF+E+Q+IL QLK +T P+E +FC++I+FYGRARL E+AL++ E+ SF VQR
Sbjct: 55 LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS+N+LL+ L C D+M +LF +EK DAC+YN+L+ G S RL+DA KVFD
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVGIEKLGKADACTYNLLIRGFCASGRLDDASKVFD 174
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
EM R + P ++TFG LIYG CL LR+ EA KLK DM++VY V P+A ++ASLIKG
Sbjct: 175 EMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKG 230
>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g53330
gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana]
gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 471
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/262 (54%), Positives = 195/262 (74%), Gaps = 4/262 (1%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLLR + DP A++LF+NP+P N P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG +KMFDE+ Q+L LK DTR+VP EIIFCNVI+F+GR +L AL +FDEM + QR
Sbjct: 57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LL+A+L CG++++M + ++++ PDAC+YNIL+HGC S +DA K+FD
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFD 176
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM+K++++PT VTFGTLI+GLC + RV EALK+K DM++VY V+P ++ASLIK LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
GELS A K+E KI++DA
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDA 258
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
++ ++ + I+ +IS +A + +EMS + ++N L+N C +
Sbjct: 250 YEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGF--CVEN 307
Query: 139 DRMTD---LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
D + L +++EK + PD SYN+++ ++ E+A +F++M +R P +++
Sbjct: 308 DSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYR 367
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+ GLC L+ +EA + ++M+ KP ++ LC G+L +
Sbjct: 368 IVFDGLCEGLQFEEAAVILDEML-FKGYKPRRDRLEGFLQKLCESGKLEI 416
>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/262 (54%), Positives = 194/262 (74%), Gaps = 4/262 (1%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLLR + DP A++LF+NP+P N P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAIKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG +KMFDE+ Q+L QLK DTR+VP EI+FCNVI+F+GR RL AL +FDEM + QR
Sbjct: 57 LGGSKMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LLN +L CG+ ++M + ++++ PDAC+YNIL+HGC +DA K+FD
Sbjct: 117 TVKSLNSLLNTLLKCGEFEKMKERLSSIDEFGKPDACTYNILIHGCSQRGCFDDALKLFD 176
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM+K++++PT VTFGTLI+GLC LRV EALK+K+DM++VY V+P ++ASL+K LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKNLRVKEALKMKQDMLKVYGVRPTVHIYASLVKALCQI 236
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
GELS A K+E KI++D+
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDS 258
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P I+ +++ + L A ++ DE ++ ++TL+++++ G+ + ++
Sbjct: 219 VRPTVHIYASLVKALCQIGELSFAFKLKDEAYEGKIKVDSAIYSTLISSLIKAGRSNEVS 278
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M EK PD +YN+L++G V E A++V DEM+++ L+P ++++ ++ L
Sbjct: 279 RILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVEKGLKPDVISYNMILGVL 338
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +EA L EDM R PD + + GLC + A +EM+
Sbjct: 339 FRIQKWEEATYLFEDMPR-RGCSPDTLSYRIVFDGLCEGLQFEEAAAILDEML 390
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 4/182 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L +A +EV +IL ++ + P+ + + +I+ + E A +V DEM
Sbjct: 261 YSTLISSLIKAGRSNEVSRILEEM-SEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEM 319
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ V S+N +L + K + T LF+ M + SPD SY I+ G +
Sbjct: 320 VEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQF 379
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A + DEML + +P + LC +++ K+ M R DA+V++
Sbjct: 380 EEAAAILDEMLFKGYKPRRDRLERFLQKLCESGKLEILSKVISSMHR--GNADDAKVWSV 437
Query: 233 LI 234
+I
Sbjct: 438 MI 439
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
++ ++ + I+ +IS +A ++ +EMS + ++N L+N C +
Sbjct: 250 YEGKIKVDSAIYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGF--CVEN 307
Query: 139 DRMTD---LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
D + L +++EK + PD SYN+++ ++ E+A +F++M +R P +++
Sbjct: 308 DSESAYRVLDEMVEKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYR 367
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+ GLC L+ +EA + ++M+ KP ++ LC G+L +
Sbjct: 368 IVFDGLCEGLQFEEAAAILDEML-FKGYKPRRDRLERFLQKLCESGKLEI 416
>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 610
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/260 (56%), Positives = 194/260 (74%), Gaps = 6/260 (2%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S FRLASLLRLQ+DPKLAL LF++PN NPN KPFRY+LL YDL+ITKLG
Sbjct: 5 KPKRISSFRLASLLRLQEDPKLALHLFQHPNSNPNP------KPFRYSLLCYDLMITKLG 58
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
RAKMF E++QIL Q K TR+V +E +FCN+I+FYGRA L ++AL++FDEM + QRT+
Sbjct: 59 RAKMFHEMEQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTI 118
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
KS+NTLLN ++ C + D M + F ++++V PD C++NI++ G R++DA KV DEM
Sbjct: 119 KSYNTLLNVLMICKEFDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEM 178
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
R L P VTFGTLIYGLCL L++ EA KLK+ M+ V+ + P+ V+A+LIKGLCAVGE
Sbjct: 179 KNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGE 238
Query: 243 LSLALGFKEEMVRNKIEMDA 262
LS AL KEEM R+ +++D+
Sbjct: 239 LSFALRLKEEMERDGVKVDS 258
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P E ++ +I L AL++ +EM V+ ++TL++ + G+ D +
Sbjct: 219 LCPNEYVYATLIKGLCAVGELSFALRLKEEMERDGVKVDSAIYSTLISGLFKVGRKDEVF 278
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ ME K D +YN++++G + E A+K+ DEM++ R +P ++++ ++ L
Sbjct: 279 GVLMEMELKGCKADTVTYNVMINGFCKDKDFETAYKILDEMMENRCKPDVISYNVILGEL 338
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C + + EA L EDM R PD + + GL E A +EMV
Sbjct: 339 CKDGKWSEASDLFEDMPR-RGCAPDVVSYRIVFDGLSDAMEFKDAAFILDEMV 390
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 4/151 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y +I+ L + DEV +L ++ + + + + NV I+ + + + E A ++ DE
Sbjct: 261 YSTLISGLFKVGRKDEVFGVLMEM--ELKGCKADTVTYNVMINGFCKDKDFETAYKILDE 318
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
M + V S+N +L + GK +DLF+ M + +PD SY I+ G +
Sbjct: 319 MMENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSYRIVFDGLSDAME 378
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+DA + DEM+ + P + I LC
Sbjct: 379 FKDAAFILDEMVFKGFAPRSSSICKFINRLC 409
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 8/206 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L D+ ++L ++K + +VP ++ F +I L+ A ++ D M
Sbjct: 155 FNIMIRGLCSDGRVDDALKVLDEMK-NRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYM 213
Query: 114 SSFNVQRTVKS---FNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVS 169
NV + + TL+ + G++ L + ME+ V D+ Y+ L+ G
Sbjct: 214 --VNVHGLCPNEYVYATLIKGLCAVGELSFALRLKEEMERDGVKVDSAIYSTLISGLFKV 271
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R ++ + V EM + + VT+ +I G C + + A K+ ++MM KPD
Sbjct: 272 GRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKDKDFETAYKILDEMME-NRCKPDVIS 330
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
+ ++ LC G+ S A E+M R
Sbjct: 331 YNVILGELCKDGKWSEASDLFEDMPR 356
>gi|357516331|ref|XP_003628454.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
gi|355522476|gb|AET02930.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]
Length = 303
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 168/262 (64%), Gaps = 11/262 (4%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M +KP SPFRL+SLLR QKDP LA Q+F NP + +RY++L YDLIITK
Sbjct: 1 MGSSKPISPFRLSSLLRSQKDPSLAFQIFLNPQNH-----------YRYSILSYDLIITK 49
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGRAKM +++ IL QL +DTR E + C+VISFY RARL A+Q F + SF
Sbjct: 50 LGRAKMIPQMELILQQLHNDTRHRVPEPLLCHVISFYARARLPSRAVQTFLSIPSFRCTP 109
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
T+KSFN+LLNA+LTC + +T + ++ P+ C+YNIL+ C R + A ++FD
Sbjct: 110 TLKSFNSLLNALLTCRRFQTITHFASRLSEFGPPNTCTYNILIRSCFFQGRTDRALELFD 169
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM + + P VTFGTLI+GLC + R+ +A +K+ M++ + +KP V+ +L+KG+C +
Sbjct: 170 EMRRTNVCPDQVTFGTLIHGLCKDSRMHQAFGMKKLMIQEFKLKPCVSVYTNLMKGVCEI 229
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
GEL A K+EM RN + +D
Sbjct: 230 GELHRAFEIKDEMERNGLRLDV 251
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%)
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
+++IL QLK +TR P E+IFCNVI+FYGRA L + A QVF+ + SF +RTVKS N+LL
Sbjct: 1 MEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKRTVKSVNSLL 60
Query: 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
A+L ++++MT +F + Y SPDAC++NIL+H + L+ W VFDEM KR ++P
Sbjct: 61 AALLKNRQLEKMTQVFVDISNYGSPDACTFNILIHAACLCGDLDAVWGVFDEMQKRGVKP 120
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+VTFGTLIYGL L ++ EAL+LKEDM++VY +KP+A ++ +LIKG C VGEL+ A
Sbjct: 121 NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCGVGELNFAFKL 180
Query: 250 KEEMVRNKIEM 260
KEEMV + +++
Sbjct: 181 KEEMVTSNVKL 191
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 109/216 (50%), Gaps = 5/216 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ + +KP N++ + +I L E ++ + + P I+ +I +
Sbjct: 114 QKRGVKP---NVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKGFCG 170
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
L A ++ +EM + NV+ ++TL++A+ G+ + ++D+ + M E PD +
Sbjct: 171 VGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCKPDTVT 230
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN +++G LE A +V DEM+++ +P + +F T+I LC E ++D+A+ L EDM
Sbjct: 231 YNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMP 290
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
R PD + + GLC + +L A +EM+
Sbjct: 291 R-RGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMI 325
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L + +EV IL ++ + P+ + + +I+ + + LE A +V DEM
Sbjct: 196 YSTLISALFKHGRKEEVSDILREMGENG-CKPDTVTYNAIINGHCKENDLESAHRVMDEM 254
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V SFNT++ + GK+D+ DL + M + PD SY I+ G +L
Sbjct: 255 VEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQL 314
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
++A + DEM+ + P + L+ LC E ++
Sbjct: 315 KEATSILDEMIFKGYVPRNESINKLVDRLCQECNME 350
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKS 124
+FDE+Q+ V P + F +I L+ AL++ ++M + ++
Sbjct: 109 VFDEMQK--------RGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASI 160
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD----ACSYNILMHGCVVSRRLEDAWKVFD 180
+ TL+ CG + + F++ E+ V+ + + Y+ L+ R E+ +
Sbjct: 161 YTTLIKGF--CG-VGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDILR 217
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM + +P VT+ +I G C E ++ A ++ ++M+ KPD F ++I LC
Sbjct: 218 EMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVE-KGCKPDVFSFNTIIGWLCKE 276
Query: 241 GELSLALGFKEEMVR 255
G+L A+ E+M R
Sbjct: 277 GKLDKAMDLLEDMPR 291
>gi|356514549|ref|XP_003525968.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Glycine max]
Length = 465
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 167/266 (62%), Gaps = 9/266 (3%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+ +KP SPFRL SLLR KDP LALQLF NPN +P R++L YDL+ITK
Sbjct: 1 MSTSKPISPFRLTSLLRSTKDPSLALQLFLNPN----PNPNPNPRPLRHSLRSYDLLITK 56
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L RAKMF +++QILHQL+ T+ E + C VI Y RARL AL+ F + SF
Sbjct: 57 LARAKMFPQMEQILHQLQTLTQFPVPEPLLCRVIISYARARLPSRALRTFLSIPSFRCTP 116
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRR-LEDAWK 177
T+KSFN+LL+A+L C + L + + + PDAC+YNIL+ C ++ L A K
Sbjct: 117 TLKSFNSLLHALLLCRDFPSLPRLLPRLRHFSASGPDACTYNILIRACSLNNNDLAHARK 176
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+FDEML ++PT VTFGTLI LC + L + EA +KEDM RV+ +KP+ V+ +LIK
Sbjct: 177 LFDEMLTLGVRPTQVTFGTLINMLCKDPHLNLREAFSVKEDMERVFKLKPNVFVYTNLIK 236
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
+C VG+ A K+EMVRN + +D
Sbjct: 237 AVCEVGDFDCAFRLKDEMVRNNLRLD 262
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ N+I + A ++ DEM N++ V +NTL +A+ GK +
Sbjct: 226 PNVFVYTNLIKAVCEVGDFDCAFRLKDEMVRNNLRLDVVVYNTLTSAVFKAGKKGLGYRI 285
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M+ V PDA + N+L+ L +A++V D+ ++ ++P + + +I LC
Sbjct: 286 LEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVE-GVKPDVFGYNVVIGWLCK 344
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E + EA L DM R V PD + ++ GLC + A EEMV
Sbjct: 345 EGKWREADDLFRDMPRRQCV-PDVVTYRTVFDGLCQWMQFEEAGLVLEEMV 394
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
++ +EM S V+ + N L+ G + + + V PD YN+++
Sbjct: 284 RILEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVEGVKPDVFGYNVVIGWLC 343
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDMMRVYNVKPD 226
+ +A +F +M +R+ P +VT+ T+ GLC ++ +EA L L+E + + Y P
Sbjct: 344 KEGKWREADDLFRDMPRRQCVPDVVTYRTVFDGLCQWMQFEEAGLVLEEMVFKGY--VPC 401
Query: 227 AQVFASLIKGLCAVGELSL 245
+ + LC G+ L
Sbjct: 402 SSSLNEFVGRLCQEGDFEL 420
>gi|357129559|ref|XP_003566429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Brachypodium distachyon]
Length = 461
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 158/251 (62%), Gaps = 10/251 (3%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPL-KPFRYNLLHYDLIITKLGRAKM 66
S + LA+ LR + DP AL+LF NP+ + A P+ PFRY+L YDLII+K+ A++
Sbjct: 7 SSYHLAAALRREPDPAAALRLFLNPS----SAAASPIPTPFRYSLRCYDLIISKVAAARL 62
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F ++ +L L+ + + P E + C VIS YGRARL A + F +F RT ++ N
Sbjct: 63 FPAMESLLSSLRT-SSLSPREPLLCCVISAYGRARLPAAARRAF-AHPAFPAPRTSRALN 120
Query: 127 TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TLL+A+L C + +LF + + VSPDAC+YNILM S ++ A +FDEM++R
Sbjct: 121 TLLHALLVCHT--PLDELFSVCRDADVSPDACTYNILMRAAAASGSVDHARLLFDEMVQR 178
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
R+ PT+VTFGTL+ C R+DEA LKE M R YNV+P+A V+ASL+KGLC G+
Sbjct: 179 RIAPTVVTFGTLVAAFCSSGRLDEAFDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADN 238
Query: 246 ALGFKEEMVRN 256
A+ KEEM N
Sbjct: 239 AVRLKEEMAGN 249
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++ + DE + + V P ++ +++ ++ ++A+++
Sbjct: 183 TVVTFGTLVAAFCSSGRLDEAFDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADNAVRL 242
Query: 110 FDEMSSFNVQRTVKS--FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG- 165
+EM+ N + + S + TL+ A+ G+ + L + M+ + ++ D +N ++ G
Sbjct: 243 KEEMAG-NAELGLDSAIYATLVRALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGF 301
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C L+ A+ V D+M K + V++ TL+ GLC R +A +L EDM R P
Sbjct: 302 CEDEMDLDAAFVVLDDMQKSGCKADTVSYNTLVAGLCKLGRWRDANELVEDMPR-RGCSP 360
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D + L G+CAVGE A +EMV
Sbjct: 361 DVVTYRMLFDGMCAVGEFHEANQVLDEMV 389
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 89/227 (39%), Gaps = 40/227 (17%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L + D V P+ + ++ + ++HA +FDEM + TV +F TL+ A
Sbjct: 136 LFSVCRDADVSPDACTYNILMRAAAASGSVDHARLLFDEMVQRRIAPTVVTFGTLVAAFC 195
Query: 134 TCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKV------------- 178
+ G++D DL + M + V P+A Y LM G S ++A ++
Sbjct: 196 SSGRLDEAFDLKEAMARQYNVRPNAHVYASLMKGLCQSGDADNAVRLKEEMAGNAELGLD 255
Query: 179 -----------------------FDEMLKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLK 214
+EM R + V +I G C E+ +D A +
Sbjct: 256 SAIYATLVRALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVL 315
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+DM + K D + +L+ GLC +G A E+M R D
Sbjct: 316 DDMQK-SGCKADTVSYNTLVAGLCKLGRWRDANELVEDMPRRGCSPD 361
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 1/152 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L R EV +L ++K V + + F L+ A V D+M
Sbjct: 259 YATLVRALFRVGRKGEVVGLLEEMKGRGIAVDRVVHNAMIAGFCEDEMDLDAAFVVLDDM 318
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ S+NTL+ + G+ +L + M + SPD +Y +L G
Sbjct: 319 QKSGCKADTVSYNTLVAGLCKLGRWRDANELVEDMPRRGCSPDVVTYRMLFDGMCAVGEF 378
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+A +V DEM+ + P+ + G+ +E
Sbjct: 379 HEANQVLDEMVFKGFAPSKDGVKRFVQGIEIE 410
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 154/256 (60%), Gaps = 6/256 (2%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPN-NTEAQPLKPFRYNLLHYDLIITKLG 62
AK +S + LA+ LR + DP AL+LF +P P + P PFRY+L YD+I+ KL
Sbjct: 6 AKFSSSYHLAAALRREPDPAAALRLFLSPTPTAAAGPSSSPAPPFRYSLRCYDIIVCKLA 65
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
A++F ++ +L +L R P E + C VIS YGRARL A + F +F RT
Sbjct: 66 AARLFPAMESVLARLPSSLR--PREPLLCRVISAYGRARLPAAARRAF-AHPAFPAPRTA 122
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV-SRRLEDAWKVFDE 181
++ NTLL+A+L C + L + + PDAC+YNILM V S +++A +FDE
Sbjct: 123 RALNTLLHALLAC-RAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDE 181
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
ML+R + PT+VTFGTL+ C R++EA K+KE M YN++P+A V+ASL+K LC G
Sbjct: 182 MLQRGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKG 241
Query: 242 ELSLALGFKEEMVRNK 257
++ A KEEMV N
Sbjct: 242 KVDDAHRLKEEMVSNS 257
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++T A +E ++ + + P ++ +++ ++ A ++
Sbjct: 190 TVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHRL 249
Query: 110 FDEMSSFNVQRTVKS--FNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG- 165
+EM S N + V S + TL A+ GK + L + M EK + +N ++ G
Sbjct: 250 KEEMVS-NSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGF 308
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C L+ A+ D+M K +P V++ TL+ GLC R +A +L EDM R +P
Sbjct: 309 CEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPR-RGCRP 367
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D + L G+C G S A EMV
Sbjct: 368 DVVTYRRLFDGICDAGGFSEARRVFNEMV 396
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 13/200 (6%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKS 124
+FDE+ Q + P + F +++ + A LE A +V + MS +N++
Sbjct: 178 LFDEMLQ--------RGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHV 229
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVFDEM 182
+ +L+ A+ GK+D L + M P D+ +Y L + + + +EM
Sbjct: 230 YASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEM 289
Query: 183 LKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ ++ ++I G C E +D A +DM + KPD+ + +L+ GLC +G
Sbjct: 290 KEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQK-GGCKPDSVSYNTLVGGLCKMG 348
Query: 242 ELSLALGFKEEMVRNKIEMD 261
A E+M R D
Sbjct: 349 RWRDASELVEDMPRRGCRPD 368
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + L R EV +L ++K V E+ + F L+ A D+M
Sbjct: 266 YATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDM 325
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ S+NTL+ + G+ ++L + M + PD +Y L G +
Sbjct: 326 QKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGF 385
Query: 173 EDAWKVFDEMLKRRLQPT 190
+A +VF+EM+ + P+
Sbjct: 386 SEARRVFNEMVFKGFAPS 403
>gi|302142881|emb|CBI20176.3| unnamed protein product [Vitis vinifera]
Length = 146
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 99/132 (75%), Gaps = 8/132 (6%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN KP SPFRL+SLLRLQ DPKLALQLF+NPNP+P KPFRY L YDLIITK
Sbjct: 1 MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LGR++MF E++QIL QL+ +TR P+EIIFCNVISFYGRARL + A+Q F+ + F QR
Sbjct: 53 LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112
Query: 121 TVKSFNTLLNAM 132
T ++ L+NA
Sbjct: 113 TGTTWTLLMNAF 124
>gi|242049778|ref|XP_002462633.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
gi|241926010|gb|EER99154.1| hypothetical protein SORBIDRAFT_02g029280 [Sorghum bicolor]
Length = 466
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 151/251 (60%), Gaps = 15/251 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
S + LA+ LR + DP AL+LF NP + PFRY+L YDLII +L A++F
Sbjct: 7 SSYHLAAALRRELDPAAALRLFLNPPASAT--------PFRYSLRCYDLIICRLAAARLF 58
Query: 68 DEVQQILHQLKHDTRVV---PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
++ IL +L + P E + C VIS YGRARL A + F +F +RT ++
Sbjct: 59 PAMESILSRLASSSSSSGPRPREQLLCRVISAYGRARLPAAARRAFTH-PAFPGRRTARA 117
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
NTLL+A+L C R DL + + + PDAC+YNILM S ++ A ++FDEML
Sbjct: 118 LNTLLHALLDCRAPLR--DLLVVCHDAGIPPDACTYNILMRAAAASGSVDHARQLFDEML 175
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R + PT+VTFGTL+ LC ++++A +KE M+R Y+V P+A V+ SL+KGLC G++
Sbjct: 176 RRGIAPTVVTFGTLVAALCDAGQLEDAFDMKEVMVRQYDVLPNAYVYTSLMKGLCEKGDV 235
Query: 244 SLALGFKEEMV 254
AL KEEM
Sbjct: 236 DAALRLKEEMA 246
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++ L A ++ + + V+P ++ +++ ++ AL++
Sbjct: 182 TVVTFGTLVAALCDAGQLEDAFDMKEVMVRQYDVLPNAYVYTSLMKGLCEKGDVDAALRL 241
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG-C 166
+EM+ ++ + TL+ + G+ + L + M+ + + D YN ++ G C
Sbjct: 242 KEEMAGKADLVLDSAVYATLVRPLFRVGRKGAVVGLLEEMKGRGIVADRAVYNAMLAGFC 301
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ A+ V D+M K + V++ TL+ GLC R +A +L EDM R PD
Sbjct: 302 KDEKDFGGAFAVLDDMRKNGCKADAVSYNTLVAGLCKLGRWRDASELVEDMPR-RGCHPD 360
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ L G+CA GE A +EMV
Sbjct: 361 VVTYRMLFDGMCAAGEFLEANQVLDEMV 388
>gi|194699862|gb|ACF84015.1| unknown [Zea mays]
gi|414886155|tpg|DAA62169.1| TPA: rf1 protein [Zea mays]
Length = 456
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 146/248 (58%), Gaps = 12/248 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
S + LA+ LR + DP AL+LF NP + PFRY+L YDLII++L A++F
Sbjct: 7 SSYHLAAALRREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLF 58
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
++ IL +L + P E + C V+S YGRARL A + F +F RT ++ N
Sbjct: 59 PAMESILSRLASSSGPRPREQLLCRVVSAYGRARLPAAARRAF-AHPAFPGPRTARALNA 117
Query: 128 LLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LL+A+L C R DL + + PDAC+YNILM S L A +FDEML+R
Sbjct: 118 LLHALLACRAPLR--DLLAVCRDAGTPPDACTYNILMRAAAASGSLAHARHMFDEMLRRG 175
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ PT+VTFGTL+ LC +++ A ++KE M+R Y+V P+ V+ SLIKGLC G++ A
Sbjct: 176 IAPTVVTFGTLVAALCAAGQLEGAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAA 235
Query: 247 LGFKEEMV 254
+ KEEM
Sbjct: 236 VALKEEMA 243
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 7/189 (3%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNT 127
EV++++ + H V+P ++ ++I ++ A+ + +EM+ ++ + T
Sbjct: 201 EVKEVMVRQYH---VLPNVYVYTSLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYAT 257
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKR 185
L+ A+ G+ + L + M+ V D YN ++ G C + L A+ V D+M K
Sbjct: 258 LVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQKN 317
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+ V++ TL+ GLC R +A +L EDM R PD + L G+CA E
Sbjct: 318 GCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPR-QGCHPDVVTYRMLFDGMCAAEEFLE 376
Query: 246 ALGFKEEMV 254
A +EMV
Sbjct: 377 ANQVLDEMV 385
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 86/221 (38%), Gaps = 40/221 (18%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D P+ + ++ + L HA +FDEM + TV +F TL+ A+ G+++
Sbjct: 138 DAGTPPDACTYNILMRAAAASGSLAHARHMFDEMLRRGIAPTVVTFGTLVAALCAAGQLE 197
Query: 140 RMTDLFQIM--EKYVSPDACSYNILMHG--------CVVSRRLEDAWK------------ 177
++ ++M + +V P+ Y L+ G V+ + E A K
Sbjct: 198 GAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAVALKEEMAGKADLVLDSAVYAT 257
Query: 178 ----------------VFDEMLKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDMMRV 220
+ +EM + V + ++ G C E + A + +DM +
Sbjct: 258 LVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQK- 316
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K DA + +L+ GLC +G A E+M R D
Sbjct: 317 NGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPD 357
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS-FYGRARLLEHALQVFDE 112
Y ++ L + V +L ++K + VV + +++ +++ F + L A V D+
Sbjct: 255 YATLVRALFQVGRKGAVVGLLEEMK-GSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDD 313
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M + S+NTL+ + G+ +L + M + PD +Y +L G +
Sbjct: 314 MQKNGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGMCAAEE 373
Query: 172 LEDAWKVFDEMLKRRLQPT 190
+A +V DEM+ + P+
Sbjct: 374 FLEANQVLDEMVFKGFAPS 392
>gi|226493605|ref|NP_001151863.1| rf1 protein [Zea mays]
gi|195650381|gb|ACG44658.1| rf1 protein [Zea mays]
Length = 467
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 144/243 (59%), Gaps = 12/243 (4%)
Query: 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
A+ LR + DP AL+LF NP + PFRY+L YDLII++L A++F ++
Sbjct: 23 AAALRREPDPAAALRLFLNPPASAT--------PFRYSLRCYDLIISRLAAARLFPAMES 74
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+L +L + P E + C V+S YGRARL A + F +F RT ++ N LL+A+
Sbjct: 75 VLSRLASSSGPRPREQLLCRVVSAYGRARLPAAARRAF-AHPAFPGPRTARALNALLHAL 133
Query: 133 LTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L C R DL + + PDAC+YNILM S L A +FDEML+R + PT+
Sbjct: 134 LACRAPLR--DLLAVCRDAGTPPDACTYNILMRAAAASGSLGHARHLFDEMLRRGIAPTV 191
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
VTFGTL+ LC ++++A ++KE M+R Y+V P+ V+ SLIKGLC G++ A+ KE
Sbjct: 192 VTFGTLVAALCAAGQLEDAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKE 251
Query: 252 EMV 254
EM
Sbjct: 252 EMA 254
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++ L A ++ ++ + V+P ++ ++I ++ A+ +
Sbjct: 190 TVVTFGTLVAALCAAGQLEDAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMAL 249
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG-C 166
+EM+ ++ + TL+ A+ G+ + L + M+ V D YN ++ G C
Sbjct: 250 KEEMAGKADLVLDSAVYATLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFC 309
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ L A+ V D+M K + V++ TL+ GLC R +A +L EDM R PD
Sbjct: 310 EDEKDLAAAFAVLDDMQKNGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPR-QGCHPD 368
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ L G+CA E A +EMV
Sbjct: 369 VVTYRMLFDGMCAAKEFLEANQVLDEMV 396
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 86/222 (38%), Gaps = 40/222 (18%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
D P+ + ++ + L HA +FDEM + TV +F TL+ A+ G++
Sbjct: 148 RDAGTPPDACTYNILMRAAAASGSLGHARHLFDEMLRRGIAPTVVTFGTLVAALCAAGQL 207
Query: 139 DRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM-------LKRRLQP 189
+ ++ ++M + +V P+ Y L+ G ++ A + +EM L +
Sbjct: 208 EDAFEVKEVMVRQYHVLPNVYVYTSLIKGLCEKGDVDAAMALKEEMAGKADLVLDSAVYA 267
Query: 190 TLV-----------------------------TFGTLIYGLCL-ELRVDEALKLKEDMMR 219
TLV + ++ G C E + A + +DM +
Sbjct: 268 TLVRALFQVGRKGAVVGLLEEMKGSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDDMQK 327
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K DA + +L+ GLC +G A E+M R D
Sbjct: 328 -NGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPD 368
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS-FYGRARLLEHALQVFDE 112
Y ++ L + V +L ++K + VV + +++ +++ F + L A V D+
Sbjct: 266 YATLVRALFQVGRKGAVVGLLEEMK-GSGVVADTVVYNAMLAGFCEDEKDLAAAFAVLDD 324
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M + S+NTL+ + G+ +L + M + PD +Y +L G ++
Sbjct: 325 MQKNGCKADAVSYNTLVAGLCKLGRWRDAHELVEDMPRQGCHPDVVTYRMLFDGMCAAKE 384
Query: 172 LEDAWKVFDEMLKRRLQPT 190
+A +V DEM+ + P+
Sbjct: 385 FLEANQVLDEMVFKGFAPS 403
>gi|242087215|ref|XP_002439440.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
gi|241944725|gb|EES17870.1| hypothetical protein SORBIDRAFT_09g006440 [Sorghum bicolor]
Length = 462
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 144/247 (58%), Gaps = 15/247 (6%)
Query: 13 ASLLRLQKDPKLALQLFKNP-NPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
A+LLR + DP AL+LF NP N P+++ PFRY+L YD+II+KL A++F +++
Sbjct: 12 AALLR-ETDPAAALRLFLNPTNATPSSS------PFRYSLRCYDIIISKLAAARLFPDME 64
Query: 72 QILHQLKH---DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
IL L + E + C VIS YGRARL A + F +F RT + NTL
Sbjct: 65 SILSGLPSAVPSSGTGTREHVLCQVISAYGRARLPAAARRAF-AHPAFPEPRTAHAVNTL 123
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L A+L C R DL + + +SP+ +YNILM S LE +FDEML +
Sbjct: 124 LTALLACRSPLR--DLLAVCRDTGISPNEGTYNILMRSAAASGSLEHVRHLFDEMLLLGV 181
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
PT+ TFG ++ LC ++++A ++KE M+R YNV P+A V+ASLIKGLC ++ A+
Sbjct: 182 SPTVATFGIMVAALCDADKLEQAFEVKEAMVRRYNVPPNAAVYASLIKGLCGRRKVDAAM 241
Query: 248 GFKEEMV 254
K+E+
Sbjct: 242 RLKDEIA 248
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 39/221 (17%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
DT + P E + ++ + LEH +FDEM V TV +F ++ A+ K++
Sbjct: 143 DTGISPNEGTYNILMRSAAASGSLEHVRHLFDEMLLLGVSPTVATFGIMVAALCDADKLE 202
Query: 140 RMTDLFQIM-EKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDE---------------- 181
+ ++ + M +Y V P+A Y L+ G R+++ A ++ DE
Sbjct: 203 QAFEVKEAMVRRYNVPPNAAVYASLIKGLCGRRKVDAAMRLKDEIAGKAELVRGSVVYGT 262
Query: 182 --------------------MLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMRV 220
M +R++ P V F +I GLC + R AL + +DM +
Sbjct: 263 LVRALFQVGRKDEVVGLLKEMKERKIAPHRVVFNAMIAGLCEDERDPGAALAVLDDMQKK 322
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ KPD +++L+ GLC +G+ A + M R D
Sbjct: 323 HGCKPDGVSYSTLVAGLCKLGKWREATELVKGMPRRDFPPD 363
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +++ L A ++ ++ + V P ++ ++I R ++ A+++ DE+
Sbjct: 188 FGIMVAALCDADKLEQAFEVKEAMVRRYNVPPNAAVYASLIKGLCGRRKVDAAMRLKDEI 247
Query: 114 SS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSP----------------- 154
+ + R + TL+ A+ G+ D + L + M E+ ++P
Sbjct: 248 AGKAELVRGSVVYGTLVRALFQVGRKDEVVGLLKEMKERKIAPHRVVFNAMIAGLCEDER 307
Query: 155 --------------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
D SY+ L+ G + +A ++ M +R P +VT+
Sbjct: 308 DPGAALAVLDDMQKKHGCKPDGVSYSTLVAGLCKLGKWREATELVKGMPRRDFPPDVVTY 367
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L GLC EA K+ DM+ V P L++G+ G+ +L
Sbjct: 368 RMLFDGLCAAGEFHEANKVLGDML-VKGFAPRMDGARKLVEGVEKEGDAAL 417
>gi|449485877|ref|XP_004157297.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g07740, mitochondrial-like [Cucumis sativus]
Length = 460
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 13/228 (5%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
KDP AL LF+N + K F+++ Y +I KL R++ F+ V+ IL L+
Sbjct: 60 KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ + E +F +I YG+A L+E +++F +M SFN RT++SFN LLN ++ C +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +++F Q E P++ SYNI++ G + E A +FDEML++ +QP++VT+ + +
Sbjct: 169 KASEIFQQAYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSXL 228
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LC + +D AL L ++M + P+A +A L++G C +G+ A
Sbjct: 229 GVLCRKGEMDTALCLFKNMTEKGH-HPNAVTYALLMEGWCFIGKYKEA 275
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 38/230 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L F + +I Q ++ P + + +I + + E A +FDEM
Sbjct: 154 FNVLLNTLVDCDQFSKASEIFQQ-AYEMGFRPNSVSYNIMIKGWIKKGGWEQACNLFDEM 212
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRR 171
VQ +V ++N+ L + G++D LF+ M EK P+A +Y +LM G C + +
Sbjct: 213 LEKGVQPSVVTYNSXLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKY 272
Query: 172 LEDAWKVFD----------------------------------EMLKRRLQPTLVTFGTL 197
E +FD EM KRRL+P +VT+ L
Sbjct: 273 KEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNIL 332
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ LC E +V +A K+ M+V P+A + +I G C G+ A+
Sbjct: 333 VNYLCKEGKVGDAYKVLVK-MQVGGCDPNAATYRMMIDGYCNAGDFDGAM 381
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 14/217 (6%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRV 83
AL LFKN ++ N + Y L++ + E ++++ ++ H ++
Sbjct: 240 ALCLFKNMTEKGHHP----------NAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKL 289
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMT 142
P + + +++ G+ ++ + +EM ++ V ++N L+N + GK+ D
Sbjct: 290 RP--VNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYK 347
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++ P+A +Y +++ G + + A K+ + ML P L TF +L+ GL
Sbjct: 348 VLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLL 407
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
D+ + + M ++ DA+ + LI +C
Sbjct: 408 KGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVCG 444
>gi|449436014|ref|XP_004135789.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Cucumis sativus]
Length = 460
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 132/228 (57%), Gaps = 13/228 (5%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
KDP AL LF+N + K F+++ Y +I KL R++ F+ V+ IL L+
Sbjct: 60 KDPCEALALFENYHE----------KGFKHHYPSYSSLIYKLARSRRFEAVETILGHLR- 108
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ + E +F +I YG+A L+E +++F +M SFN RT++SFN LLN ++ C +
Sbjct: 109 NRNIRCNETLFVALIQHYGKAHLVEKGIELFHQMPSFNCFRTLQSFNVLLNTLVDCDQFS 168
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +++F Q E P++ SYNI++ G + E A +FDEML++ +QP++VT+ + +
Sbjct: 169 KASEIFQQAYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEMLEKGVQPSVVTYNSFL 228
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LC + +D AL L ++M + P+A +A L++G C +G+ A
Sbjct: 229 GVLCRKGEMDTALCLFKNMTEKGH-HPNAVTYALLMEGWCFIGKYKEA 275
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 38/230 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L F + +I Q ++ P + + +I + + E A +FDEM
Sbjct: 154 FNVLLNTLVDCDQFSKASEIFQQ-AYEMDFRPNSVSYNIMIKGWIKKGGWEQACNLFDEM 212
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRR 171
VQ +V ++N+ L + G++D LF+ M EK P+A +Y +LM G C + +
Sbjct: 213 LEKGVQPSVVTYNSFLGVLCRKGEMDTALCLFKNMTEKGHHPNAVTYALLMEGWCFIGKY 272
Query: 172 LEDAWKVFD----------------------------------EMLKRRLQPTLVTFGTL 197
E +FD EM KRRL+P +VT+ L
Sbjct: 273 KEAKKLMFDMEFHGCKLRPVNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNIL 332
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ LC E +V +A K+ M+V P+A + +I G C G+ A+
Sbjct: 333 VNYLCKEGKVGDAYKVLVK-MQVGGCDPNAATYRMMIDGYCNAGDFDGAM 381
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 14/217 (6%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRV 83
AL LFKN ++ N + Y L++ + E ++++ ++ H ++
Sbjct: 240 ALCLFKNMTEKGHHP----------NAVTYALLMEGWCFIGKYKEAKKLMFDMEFHGCKL 289
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMT 142
P + + +++ G+ ++ + +EM ++ V ++N L+N + GK+ D
Sbjct: 290 RP--VNYGVLMTHLGKTGNIDEMESLLNEMKKRRLKPDVVTYNILVNYLCKEGKVGDAYK 347
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++ P+A +Y +++ G + + A K+ + ML P L TF +L+ GL
Sbjct: 348 VLVKMQVGGCDPNAATYRMMIDGYCNAGDFDGAMKILNAMLMSGHYPHLKTFASLVVGLL 407
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
D+ + + M ++ DA+ + LI +C
Sbjct: 408 KGENNDDYVCFVLEEMEKRQLRFDAETWRILIMDVCG 444
>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 141/238 (59%), Gaps = 21/238 (8%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF LA L +Q DP AL LF + Q + F+++ Y ++ KL R++ F+
Sbjct: 383 PF-LADLKSVQ-DPDDALSLFN---------QYQQMG-FKHDYPSYSALVYKLARSRNFE 430
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V+ +L L+ + + E +F +I YG++++ E A+++F M SFN RT+ SFNTL
Sbjct: 431 AVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAIELFQRMPSFNCHRTIVSFNTL 489
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
LN ++ +IDR D I ++ ++ S+NI++ G + + AW+VF+EM+
Sbjct: 490 LNVLV---EIDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMID 546
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ ++PT+VTF +LI LC + +D A+ L ZDM++ + +P+A +A L++GLC++G+
Sbjct: 547 KEVKPTVVTFNSLIGFLCGKGDLDGAMGLLZDMIQKRH-RPNAVTYALLMEGLCSLGK 603
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 5/203 (2%)
Query: 47 FRYNLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
FR N + +++II LG+ + +D+ Q+ ++ D V P + F ++I F L+
Sbjct: 514 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 571
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMH 164
A+ + ++M + ++ L+ + + GK + F + + P ++ +LM
Sbjct: 572 AMGLLZDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 631
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++D + EM +RR +P +VT+ LI LC E R EA K+ + M+V +
Sbjct: 632 DLGRRGRIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVE-MQVGGCE 690
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
P+A + ++ G C V + L
Sbjct: 691 PNAATYRMMVDGFCQVEDFEGGL 713
>gi|297849070|ref|XP_002892416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338258|gb|EFH68675.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 138/243 (56%), Gaps = 13/243 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP + L+ +DP+ AL LF + Q + FR++ Y +I KL ++
Sbjct: 45 KPWEEVPFLTDLKEIEDPEEALSLFH---------QYQEMG-FRHDYPSYSSLIYKLAKS 94
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+ FD V QIL +++ V E +F +I YG+A ++ A+ VF +++SF+ RT++S
Sbjct: 95 RNFDAVDQILRLVRY-RNVRCRESLFMALIQHYGKAGWVDKAVDVFHKLTSFDCVRTIQS 153
Query: 125 FNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
NTL+N ++ G++++ F + + P++ S+NIL+ G + E A KVFDEML
Sbjct: 154 LNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEML 213
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +QP++VT+ +LI LC + +A L EDM++ ++P+A F L+KGLC GE
Sbjct: 214 EMEVQPSVVTYNSLIGFLCRNNDMGKATSLLEDMIK-KRIRPNAVTFGLLMKGLCCNGEY 272
Query: 244 SLA 246
+ A
Sbjct: 273 NEA 275
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D R+ P + F +I + E A +VFDEM VQ +V ++N+L+ + +
Sbjct: 179 DMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNNDMG 238
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKV-FD----------------- 180
+ T L + M +K + P+A ++ +LM G + +A K+ FD
Sbjct: 239 KATSLLEDMIKKRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRGCKPGLVNYGVLM 298
Query: 181 -----------------EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
EM KRR++P V + L+ LC E RV EA + + M++
Sbjct: 299 SDLGKRGKIDEAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTE-MQMKGC 357
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
KP+A + ++ G C +G+ L M+ ++
Sbjct: 358 KPNAATYRMIVDGFCRIGDFDSGLNVLNAMLASR 391
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N + + L++ L ++E ++++ +++ P + + ++S G+ ++
Sbjct: 250 KRIRPNAVTFGLLMKGLCCNGEYNEAKKLMFDMEYRG-CKPGLVNYGVLMSDLGKRGKID 308
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A + EM ++ +N L+N + T G++ + L ++ K P+A +Y +++
Sbjct: 309 EAKILLGEMKKRRIKPDFVIYNILVNHLCTEGRVPEAYRTLTEMQMKGCKPNAATYRMIV 368
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
G + V + ML R PT TF ++ GL +D A + E M +
Sbjct: 369 DGFCRIGDFDSGLNVLNAMLASRHSPTPATFVRMVSGLIKGGNLDHACFVLEVMGK 424
>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g07740, mitochondrial; Flags: Precursor
gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 138/243 (56%), Gaps = 13/243 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP + L+ +DP+ AL LF + Q + FR++ Y +I KL ++
Sbjct: 45 KPWEEVPFLTDLKEIEDPEEALSLFH---------QYQEMG-FRHDYPSYSSLIYKLAKS 94
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+ FD V QIL +++ V E +F +I YG+A ++ A+ VF +++SF+ RT++S
Sbjct: 95 RNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQS 153
Query: 125 FNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
NTL+N ++ G++++ F + + P++ S+NIL+ G + E A KVFDEML
Sbjct: 154 LNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEML 213
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +QP++VT+ +LI LC + +A L EDM++ ++P+A F L+KGLC GE
Sbjct: 214 EMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIK-KRIRPNAVTFGLLMKGLCCKGEY 272
Query: 244 SLA 246
+ A
Sbjct: 273 NEA 275
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
K+FDE+ ++ V P + + ++I F R + A + ++M ++
Sbjct: 206 CKVFDEMLEM--------EVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAV 257
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F L+ + G+ + L ME + P +Y ILM R+++A + EM
Sbjct: 258 TFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEM 317
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
KRR++P +V + L+ LC E RV EA ++ + M++ KP+A + +I G C + +
Sbjct: 318 KKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTE-MQMKGCKPNAATYRMMIDGFCRIED 376
Query: 243 LSLALGFKEEMVRNK 257
L M+ ++
Sbjct: 377 FDSGLNVLNAMLASR 391
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 3/195 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N + + L++ L ++E ++++ +++ P + + ++S G+ ++
Sbjct: 250 KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRG-CKPGLVNYGILMSDLGKRGRID 308
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILM 163
A + EM ++ V +N L+N + T C + L ++ K P+A +Y +++
Sbjct: 309 EAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMI 368
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + V + ML R PT TF ++ GL +D A + E +M N+
Sbjct: 369 DGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLE-VMGKKNL 427
Query: 224 KPDAQVFASLIKGLC 238
+ + +L+ LC
Sbjct: 428 SFGSGAWQNLLSDLC 442
>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
Length = 395
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 114/189 (60%), Gaps = 5/189 (2%)
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++ +L +L R P E + C VIS YGRARL A + F +F RT ++ NTLL
Sbjct: 1 MESVLARLPSSLR--PREPLLCRVISAYGRARLPAAARRAF-AHPAFPAPRTARALNTLL 57
Query: 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV-SRRLEDAWKVFDEMLKRRLQ 188
+A+L C + L + + PDAC+YNILM V S +++A +FDEML+R +
Sbjct: 58 HALLAC-RAPLPELLSECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIA 116
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
PT+VTFGTL+ C R++EA K+KE M YN++P+A V+ASL+K LC G++ A
Sbjct: 117 PTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHR 176
Query: 249 FKEEMVRNK 257
KEEMV N
Sbjct: 177 LKEEMVSNS 185
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++T A +E ++ + + P ++ +++ ++ A ++
Sbjct: 118 TVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASLMKALCEKGKVDDAHRL 177
Query: 110 FDEMSSFNVQRTVKS--FNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG- 165
+EM S N + V S + TL A+ GK + L + M EK + +N ++ G
Sbjct: 178 KEEMVS-NSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGF 236
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C L+ A+ D+M K +P V++ TL+ GLC R +A +L EDM R +P
Sbjct: 237 CEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPR-RGCRP 295
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D + L G+C G S A EMV
Sbjct: 296 DVVTYRRLFDGICDAGGFSEARRVFNEMV 324
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 13/200 (6%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKS 124
+FDE+ Q + P + F +++ + A LE A +V + MS +N++
Sbjct: 106 LFDEMLQ--------RGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHV 157
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVFDEM 182
+ +L+ A+ GK+D L + M P D+ +Y L + + + +EM
Sbjct: 158 YASLMKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEM 217
Query: 183 LKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ ++ ++I G C E +D A +DM + KPD+ + +L+ GLC +G
Sbjct: 218 KEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQK-GGCKPDSVSYNTLVGGLCKMG 276
Query: 242 ELSLALGFKEEMVRNKIEMD 261
A E+M R D
Sbjct: 277 RWRDASELVEDMPRRGCRPD 296
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 1/138 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + L R EV +L ++K V E+ + F L+ A D+M
Sbjct: 194 YATLARALFRLGKKGEVVSLLEEMKEKGIKVGREVHNSMIAGFCEDEGDLDAAFAALDDM 253
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ S+NTL+ + G+ ++L + M + PD +Y L G +
Sbjct: 254 QKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPRRGCRPDVVTYRRLFDGICDAGGF 313
Query: 173 EDAWKVFDEMLKRRLQPT 190
+A +VF+EM+ + P+
Sbjct: 314 SEARRVFNEMVFKGFAPS 331
>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 140/238 (58%), Gaps = 21/238 (8%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF LA L +Q DP AL LF + Q + F+++ Y ++ KL R++ F+
Sbjct: 454 PF-LADLKSVQ-DPDDALSLFN---------QYQQMG-FKHDYPSYSALVYKLARSRNFE 501
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V+ +L L+ + + E +F +I YG++++ E A+++F M SFN RT+ SFNTL
Sbjct: 502 AVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTL 560
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
LN ++ + DR D I ++ ++ S+NI++ G + + AW+VF+EM+
Sbjct: 561 LNVLV---ENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMID 617
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ ++PT+VTF +LI LC + +D A+ L EDM++ + +P+A +A L++GLC++G+
Sbjct: 618 KEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH-RPNAVTYALLMEGLCSLGK 674
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 5/203 (2%)
Query: 47 FRYNLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
FR N + +++II LG+ + +D+ Q+ ++ D V P + F ++I F L+
Sbjct: 585 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 642
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMH 164
A+ + ++M + ++ L+ + + GK + F + + P ++ +LM
Sbjct: 643 AMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 702
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++D+ + EM +RR +P +VT+ LI LC E R EA K+ + M+V +
Sbjct: 703 DLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVE-MQVGGCE 761
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
P+A + ++ G C V + L
Sbjct: 762 PNAATYRMMVDGFCQVEDFEGGL 784
>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Vitis vinifera]
Length = 501
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 141/242 (58%), Gaps = 21/242 (8%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF LA L +Q DP AL LF + Q + F+++ Y ++ KL R++ F+
Sbjct: 92 PF-LADLKSVQ-DPDDALSLF---------NQYQQMG-FKHDYPSYSALVYKLARSRNFE 139
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V+ +L L+ + + E +F +I YG++++ E A+++F M SFN RT+ SFNTL
Sbjct: 140 AVETLLDYLQ-NINIRCRETLFIALIQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTL 198
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
LN ++ + DR D I ++ ++ S+NI++ G + + AW+VF+EM+
Sbjct: 199 LNVLV---ENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMID 255
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ ++PT+VTF +LI LC + +D A+ L EDM++ + +P+A +A L++GLC++G+
Sbjct: 256 KEVKPTVVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRH-RPNAVTYALLMEGLCSLGKYK 314
Query: 245 LA 246
A
Sbjct: 315 EA 316
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 5/203 (2%)
Query: 47 FRYNLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
FR N + +++II LG+ + +D+ Q+ ++ D V P + F ++I F L+
Sbjct: 223 FRRNSISFNIIIKGWLGKGE-WDKAWQVFEEMI-DKEVKPTVVTFNSLIGFLCGKGDLDG 280
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMH 164
A+ + ++M + ++ L+ + + GK + F + + P ++ +LM
Sbjct: 281 AMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMS 340
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++D+ + EM +RR +P +VT+ LI LC E R EA K+ + M+V +
Sbjct: 341 DLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVE-MQVGGCE 399
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
P+A + ++ G C V + L
Sbjct: 400 PNAATYRMMVDGFCQVEDFEGGL 422
>gi|356544600|ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Glycine max]
Length = 449
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 21/241 (8%)
Query: 5 KPTSPFR----LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
+PT FR + ++ +DP+ AL LF + FR+ Y ++ K
Sbjct: 34 RPTPKFRKRIPFVTEVKTVEDPEEALSLFHRYKE----------QGFRHYYPSYAALLYK 83
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L R++MFD V+ IL +K DT + E +F + YG E A+++F+ M FN R
Sbjct: 84 LARSRMFDAVETILAHMK-DTEMQCRESVFIALFQHYGP----EKAVELFNRMPQFNCTR 138
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
T++SFN LLN ++ + D D+F + E P+ ++NI++ G + A +VF
Sbjct: 139 TIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVF 198
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
DEML++R+QP++VT+ +LI LC + +D+A+ L EDM + + +A L++GLC+
Sbjct: 199 DEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQ-KGKHANEVTYALLMEGLCS 257
Query: 240 V 240
V
Sbjct: 258 V 258
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Query: 47 FRYNLLHYDLII------TKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
FR N + +++++ + G+A ++FDE+ Q RV P + + ++I F R
Sbjct: 171 FRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQ--------KRVQPSVVTYNSLIGFLCR 222
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACS 158
L+ A+ + ++M ++ L+ + + K + L F + + +
Sbjct: 223 KGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVN 282
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ +LM+ ++E+A + EM KRRL+P +VT+ LI LC E + EA K+ + M
Sbjct: 283 FGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLE-M 341
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
++ P+A + ++ GLC +G+ +AL M+ ++
Sbjct: 342 QIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSR 380
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 89/191 (46%), Gaps = 3/191 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y L++ L + +E ++++ + + + + F +++ G+ +E A +
Sbjct: 244 NEVTYALLMEGLCSVEKTEEAKKLMFDMAYRG-CKAQPVNFGVLMNDLGKRGKVEEAKSL 302
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
EM ++ V ++N L+N + GK ++ L ++ P+A +Y +++ G
Sbjct: 303 LHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQ 362
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E A V + ML R P TF ++ GL +D + + E+M + ++ D +
Sbjct: 363 IGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEMEK-RKLEFDLE 421
Query: 229 VFASLIKGLCA 239
+ ++IK C+
Sbjct: 422 SWETIIKSACS 432
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+++ +++ LG+ +E + +LH++K R+ P+ + + +I++ + A +V
Sbjct: 281 VNFGVLMNDLGKRGKVEEAKSLLHEMK-KRRLKPDVVTYNILINYLCKEGKAMEAYKVLL 339
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
EM ++ +++ + G + ++ L ++ P + ++N ++ G + S
Sbjct: 340 EMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMVVGLLKSG 399
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
++ + V +EM KR+L+ L ++ T+I C E
Sbjct: 400 NIDGSCFVLEEMEKRKLEFDLESWETIIKSACSE 433
>gi|255580552|ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529296|gb|EEF31265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 483
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 130/231 (56%), Gaps = 19/231 (8%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
+DP AL LF + N FR++ Y ++ KL R++ F+ V+ +L L+
Sbjct: 59 EDPDKALSLFHDYLQNG----------FRHDYPSYSALVYKLARSRRFEAVETVLGYLQ- 107
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D V + +F + YG+ L+ A+++F+EM+ FN RT++SFN LLN ++ D
Sbjct: 108 DFNVRCRDTLFIALFEHYGKVGLVAKAIRLFNEMTGFNCIRTLQSFNALLNVLVD---ND 164
Query: 140 RMTDLFQIMEKYVSP----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
R+ D Q+ ++ ++ +NIL+ G + A KVFDEML+R+++P++VT+
Sbjct: 165 RLFDAKQLFDRSSEMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPSVVTYN 224
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+LI LC + +A L +DM++ +P+A +A L++GLC++GE A
Sbjct: 225 SLIGYLCRNGELGKAKGLFKDMIKK-GKRPNAVTYALLMEGLCSMGEYKEA 274
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 37/179 (20%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +VFDEM V+ +V ++N+L+ + G++ + LF+ M +K P+A +Y +LM
Sbjct: 203 QAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKRPNAVTYALLM 262
Query: 164 HG-CVVSRRLEDAWKVFD----------------------------------EMLKRRLQ 188
G C + E +FD EM KRR +
Sbjct: 263 EGLCSMGEYKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFR 322
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +V + LI LC E +V EA K + M++ + +A + L G C VGE L
Sbjct: 323 PDVVIYNILINHLCKEGKVAEAYKTLFE-MQIGGCEANAATYRMLADGFCQVGEFEEGL 380
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 98/215 (45%), Gaps = 3/215 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N + Y L++ L + E +++L +++ P+ + F +++ G+ +E
Sbjct: 249 KGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRG-CKPKNLNFGVLMNDLGKKGKIE 307
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A + EM + V +N L+N + GK+ + LF++ +A +Y +L
Sbjct: 308 EAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLA 367
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G E+ KV + ML R P + TF + GL +D A + E+M + +
Sbjct: 368 DGFCQVGEFEEGLKVLNAMLVSRHAPRIETFNCFVVGLMKSGSIDGAFFVLEEMEK-RKM 426
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D+ + +L++ C+ + ++ E ++R+ +
Sbjct: 427 ALDSDGWEALVRCCCSEHRGAGSVLLCESLIRHNL 461
>gi|359489475|ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
vinifera]
Length = 1105
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 134/255 (52%), Gaps = 20/255 (7%)
Query: 5 KPT---SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
KP+ SP R+ L+ Q DP LA ++F + PN F+++ + ++I KL
Sbjct: 38 KPSPIGSPSRVQKLIASQSDPLLAKEIFDLASLQPN---------FKHSYSSFHILILKL 88
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
G A+ F +Q +L +LK + + + F ++I YG A L + AL+ F M F+ +
Sbjct: 89 GWARQFSLMQDLLMRLKSEQYSINPSL-FSDIIEIYGEANLPDQALKTFHSMLQFHSKPL 147
Query: 122 VKSFNTLLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N LL +++ R DLF+ +Y VSPD SYNILM + L A+ +F
Sbjct: 148 PKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLF 207
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
++M KR + P + ++ L+ GLC + +V+ A+ L EDM+ V PD A+L+ GLC
Sbjct: 208 NQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYV-PD----ATLVSGLCD 262
Query: 240 VGELSLALGFKEEMV 254
G A + EEM+
Sbjct: 263 QGLYDEAKNYVEEML 277
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 133/284 (46%), Gaps = 52/284 (18%)
Query: 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
A++LR+ D L FK + + K FR +Y+ + L +AK F ++
Sbjct: 143 ATILRVXDD--LGSAXFKKSSDS---------KRFRSRYGYYEKAVLTLAKAKKFSFIED 191
Query: 73 IL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
IL HQ +++ + E+ +I+ YG+A + EHA ++FDEM N +RTV SFN LL+A
Sbjct: 192 ILEHQKQYNE--ISTEVFAVRLITLYGKAGMFEHAHKLFDEMPKLNCERTVMSFNALLSA 249
Query: 132 MLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ K D++ FQ + + + PD SYNIL++ L+ A V DEM K L+P
Sbjct: 250 CVNSKKFDKIDGFFQELPRNLGIVPDVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEP 309
Query: 190 TLVTFGTL-----------------------------------IYGLCLELRVDEALKLK 214
L+TF TL + G+ E R+ EA+ L
Sbjct: 310 DLITFNTLLNVFYQSGSNADGEKIWDLMKKNNVAPNVRSYNAKLRGVISENRMSEAVNLI 369
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D M+ +KPD SL+KG C G L A + E+ N++
Sbjct: 370 -DEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWHSEIAINEL 412
>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 135/242 (55%), Gaps = 15/242 (6%)
Query: 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
++ + +PF + ++ +DP AL LF + F+ + Y ++ KL
Sbjct: 26 SRNRNDAPF--VNHVKEARDPVEALTLF----------HEYLQRGFKPDYPSYAALLYKL 73
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F V+++L ++ D V +E IF + YG+A+L+ A+++F+ M+ FN RT
Sbjct: 74 ARCQDFGAVEEVLRYVE-DKNVHCQETIFIALFQHYGKAQLVHKAVELFNRMTRFNCVRT 132
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+S N+LLN ++ G +LF + E ++ ++N+++ G + E A KVFD
Sbjct: 133 SQSLNSLLNVLVDNGWFLEANELFDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKVFD 192
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EML+R+++P++VT+ +LI LC +D+A L EDM++ +P+A FA L++G C +
Sbjct: 193 EMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIK-KGKRPNAITFALLMEGSCLI 251
Query: 241 GE 242
GE
Sbjct: 252 GE 253
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A +VFDEM V+ +V ++N+L+ + G++D+ L + M +K P+A ++ +L
Sbjct: 185 EQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKRPNAITFALL 244
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + +A K+ +M R +PT+V FG L+ L ++DEA + +M + +
Sbjct: 245 MEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRH- 303
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+KPD + LI LC G + A EM E +A
Sbjct: 304 MKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANA 343
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 9/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEH--A 106
+++ Y+ +I L R D+ + +L + K R P I F ++ G + EH A
Sbjct: 202 SVVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKR--PNAITFALLME--GSCLIGEHNEA 257
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
++ +M + TV +F L++ + GKID + M+K ++ PD +YNIL++
Sbjct: 258 KKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINY 317
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R DA++V EM + T+ L+ G C + LK+ M+ + P
Sbjct: 318 LCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHF-P 376
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ F SL+ GL G L A EEM + ++
Sbjct: 377 RVETFRSLVVGLVKSGNLDGACFVLEEMEKRQM 409
>gi|297834132|ref|XP_002884948.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
gi|297330788|gb|EFH61207.1| hypothetical protein ARALYDRAFT_478692 [Arabidopsis lyrata subsp.
lyrata]
Length = 394
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 140/291 (48%), Gaps = 49/291 (16%)
Query: 4 AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
A P+SP L +L+ ++DPK ++ FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSSPRPSLITLVNDERDPKFIMEKFK---------KACQAEWFRKNIAVYEKTVRRLA 82
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
AK F+ V++IL + + E + +I+ YGR + E+A +VFDEM N +RTV
Sbjct: 83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTV 141
Query: 123 KSFNTLLNAMLTCGKIDRMTDLF------------------------------------- 145
SFN LLNA + K D + +F
Sbjct: 142 LSFNALLNACVNSKKFDLVESIFKELPGKISIEPDVASYNTLIKGLCGKGSFTEAVALID 201
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
+I K + PD ++NIL+H + E+ K++ M++++++ + ++ + GL +E
Sbjct: 202 EIENKGLKPDHITFNILLHESYTKGKFEEGEKIWARMVEKKVKRDIRSYNARLLGLAMEK 261
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +E + L D ++V +KPD F ++IKG G L A+ + +E+ +N
Sbjct: 262 KSEEMVSLF-DELKVNELKPDVFTFTAMIKGFAGEGRLDEAITWYKEIEKN 311
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A KVFDEM +R + T+++F L+ + D + +++ +++PD +
Sbjct: 122 FENAQKVFDEMPERNCKRTVLSFNALLNACVNSKKFDLVESIFKELPGKISIEPDVASYN 181
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LIKGLC G + A+ +E+ ++ D
Sbjct: 182 TLIKGLCGKGSFTEAVALIDEIENKGLKPD 211
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHAL 107
++ Y+ +I L F E ++ ++++ + P+ I F N++ Y + + E
Sbjct: 176 DVASYNTLIKGLCGKGSFTEAVALIDEIENKG-LKPDHITF-NILLHESYTKGKF-EEGE 232
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+++ M V+R ++S+N L + K + M LF ++ + PD ++ ++ G
Sbjct: 233 KIWARMVEKKVKRDIRSYNARLLGLAMEKKSEEMVSLFDELKVNELKPDVFTFTAMIKGF 292
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
RL++A + E+ K +P F +L+ +C ++ A +L
Sbjct: 293 AGEGRLDEAITWYKEIEKNGCRPMKFVFNSLLPAICKACDLESAYEL 339
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 132/253 (52%), Gaps = 12/253 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LALQ+F+ + QP F +N YD II KL RA++F
Sbjct: 61 PKRLVSMITRQQNLDLALQIFEYAG------KYQP--NFSHNYDTYDSIIHKLSRARVFG 112
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V+ +L L H +++ E IF NVI YG A + AL+ F + FNVQR+V+S NTL
Sbjct: 113 PVELLLSDL-HKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTL 171
Query: 129 LNAMLTCGKIDRMTDLFQ-IMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LNA + + D + +F+ KY V P+ + NIL+ +E A KV DEM
Sbjct: 172 LNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMG 231
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P +VT+ T++ G + A K+ ++ PDA + L+ G C G L+ A
Sbjct: 232 MIPNVVTYTTILGGYSSRGDMVNANKVFGELFD-RGWLPDATTYTILMNGYCEQGRLADA 290
Query: 247 LGFKEEMVRNKIE 259
+ ++M N +E
Sbjct: 291 IKLMDDMGENGVE 303
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 4/193 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
K +D V + + V+P + CN+ I + +E A++V DEM + + V
Sbjct: 179 KRYDLVHAMFKNCRSKYGVLPN-VFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVV 237
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T+L + G + +F ++ ++ PDA +Y ILM+G RL DA K+ D+M
Sbjct: 238 TYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDM 297
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ ++P VT+G ++ C E + EA L +DM+ V P + + +I LC G+
Sbjct: 298 GENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYV-PSSALCCKVIDVLCEAGK 356
Query: 243 LSLALGFKEEMVR 255
+ A + M++
Sbjct: 357 IEEACELWKRMLK 369
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ V P E+ + ++ Y + + A + D+M + +++ + GKI+
Sbjct: 299 ENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIE 358
Query: 140 RMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L++ +++K PD + L+H ++ +A K+F E +R P+L+T+ TLI
Sbjct: 359 EACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGE-FERGAIPSLLTYNTLI 417
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
G+C + + EA KL +DMM KP+A + LIKG +G + EEM+ N+
Sbjct: 418 AGMCEKGELSEAGKLWDDMME-KGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNR 475
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +++ + K E + +L + + + VP + C VI A +E A ++
Sbjct: 305 NEVTYGVMVEAYCKEKKAGEARNLLDDM-LERQYVPSSALCCKVIDVLCEAGKIEEACEL 363
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ M N +TL++ + GK+ LF E+ P +YN L+ G
Sbjct: 364 WKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFERGAIPSLLTYNTLIAGMCEK 423
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L +A K++D+M+++ +P T+ LI G E +++ E+M+ P+
Sbjct: 424 GELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLD-NRCMPNKST 482
Query: 230 FASLIKGLCAVG 241
+A LI+ LC +G
Sbjct: 483 YAILIEELCKMG 494
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y I+ ++ +L D +P+ + +++ Y L A+++
Sbjct: 235 NVVTYTTILGGYSSRGDMVNANKVFGEL-FDRGWLPDATTYTILMNGYCEQGRLADAIKL 293
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
D+M V+ ++ ++ A K +L M +YV A ++ C
Sbjct: 294 MDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCE 353
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +E+A +++ MLK+ P TLI+ LC E +V EA KL + R P
Sbjct: 354 AGK-IEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEFER--GAIPSL 410
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI G+C GELS A ++M+ + +A
Sbjct: 411 LTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNA 445
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 41/252 (16%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK F ++ IL HQ +++ + E+ +++ YG+A +
Sbjct: 51 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 108
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNI 161
EHA ++FDE+ N +RTV SFN LL+ + K D++ FQ + V PD SYNI
Sbjct: 109 EHAHKLFDELPKLNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNI 168
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------------------ 197
+++ L+ A V DEM K L+P L+TF TL
Sbjct: 169 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 228
Query: 198 -----------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ G+ E R+ EA++L D M+ +KPD SL+KG C G L A
Sbjct: 229 VAPNVRSYNAKLRGVISENRMSEAVELI-DEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 287
Query: 247 LGFKEEMVRNKI 258
+ E+ RN++
Sbjct: 288 KRWYSEIARNEL 299
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++ +++ +K FD++ +L + VVP+ + + +++ + L+ AL V
Sbjct: 127 VVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVL 186
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
DEM ++ + +FNTLLNA G ++ +M+K V+P+ SYN + G +
Sbjct: 187 DEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISE 246
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ +A ++ DEM ++P + T +L+ G C ++EA + ++ R + P
Sbjct: 247 NRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIAR-NELPPVRAT 305
Query: 230 FASLIKGLCAVGELSLA 246
+ +LI L G+ +A
Sbjct: 306 YMTLIPFLVEKGDFDMA 322
>gi|296089012|emb|CBI38715.3| unnamed protein product [Vitis vinifera]
Length = 429
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 130/249 (52%), Gaps = 15/249 (6%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q DP LA ++F + PN F+++ + ++I KLG A+ F
Sbjct: 58 SPSRVQKLIASQSDPLLAKEIFDLASLQPN---------FKHSYSSFHILILKLGWARQF 108
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+Q +L +LK + + +F ++I YG A L + AL+ F M F+ + K N
Sbjct: 109 SLMQDLLMRLKSEQYSI-NPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNR 167
Query: 128 LLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL +++ R DLF+ +Y VSPD SYNILM + L A+ +F++M KR
Sbjct: 168 LLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKR 227
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+ P + ++ L+ GLC + +V+ A+ L EDM+ V PDA + + GLC G
Sbjct: 228 DVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYV-PDALSYTTF--GLCDQGLYDE 284
Query: 246 ALGFKEEMV 254
A + EEM+
Sbjct: 285 AKNYVEEML 293
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 15/245 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+LRL K P ALQ F P F +N Y L++ LGRA+ + + L
Sbjct: 92 VLRLIKTPSKALQFFN----------WAPELGFTHNDQSYFLMLEILGRARNLNVARNFL 141
Query: 75 HQLKH--DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+K + V E+ F ++I YG+A L + ++QVF+ M S V +V +FN+LL +
Sbjct: 142 FSIKRRSNGTVKLEDRFFNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLIL 201
Query: 133 LTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
L G+ + +F +++ Y V+PD ++NIL+ G + +++ ++ F EM + + P
Sbjct: 202 LKRGRTNMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPD 261
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
LVT+ TL+ GLC +V+ A + M+ + N+ PD + +L++G C E+ AL
Sbjct: 262 LVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVV 321
Query: 250 KEEMV 254
EEMV
Sbjct: 322 FEEMV 326
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI+ K GR M Q + ++ V P+ F +I + + +++ + F EMS
Sbjct: 199 LILLKRGRTNM---AQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR 255
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRL 172
F + ++NTL++ + GK++ ++ M K ++PD +Y L+ G + +
Sbjct: 256 FKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEI 315
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A VF+EM+ + L+P +T+ TLI GLC ++D+ ++ E + PD +
Sbjct: 316 DEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNT 375
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ C G L+ AL E+M+
Sbjct: 376 LMNAHCNAGNLNDALEVFEKMM 397
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 9/206 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+L+ Y+ ++ L RA + +++ + K T + P+ + + ++ Y ++ AL
Sbjct: 261 DLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALV 320
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGC 166
VF+EM S ++ ++NTL+ + KID++ +F+ + PD C+ N LM+
Sbjct: 321 VFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAH 380
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRV 220
+ L DA +VF++M+ ++P T+ LI LC + A +L KE ++R
Sbjct: 381 CNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRD 440
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA 246
P + S+ + LC G+ + A
Sbjct: 441 DGCTPLVAAYKSMFEFLCRNGKTAKA 466
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 106/224 (47%), Gaps = 13/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N + Y+ +I L + D+++QI +P+ +++ + A
Sbjct: 327 SKGLKP---NEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNA 383
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
L AL+VF++M NV+ +++ L+ + G +R LF ++ EK +
Sbjct: 384 GNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGC 443
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P +Y + + + A +VF +++KR Q L +F LI G C E + +
Sbjct: 444 TPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQDPL-SFKILIKGHCREGTFEAGYE 502
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R + PD + + SLI GL GE +A E+M+++
Sbjct: 503 LLVLMLR-RDFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKS 545
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ + +++ +VF+ M + P++VTF +L+ L R + A + ++M+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Y V PD F LI+G C + F +EM R K + D
Sbjct: 219 STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPD 261
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q DP LA ++F + PN F+++ + ++I KLG A+ F
Sbjct: 13 SPSRVQKLIASQSDPLLAKEIFDLASLQPN---------FKHSYSSFHILILKLGWARQF 63
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+Q +L +LK + + + F ++I YG A L + AL+ F M F+ + K N
Sbjct: 64 SLMQDLLMRLKSEQYSINPSL-FSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNX 122
Query: 128 LLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL +++ R DLF+ +Y VSPD SYNILM + L A+ +F++M KR
Sbjct: 123 LLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKR 182
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ P + ++ L+ GLC + +V+ A+ L EDM+ V PDA + +L+ LC
Sbjct: 183 DVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYV-PDALSYTTLLNSLC 234
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H V P+ + ++S + L A +F++M +V V+S+ L+ + ++
Sbjct: 145 HRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQV 204
Query: 139 DRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+R DL + ++ K PDA SY L++ ++L++A+K+ M + P +V + T+
Sbjct: 205 NRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTV 264
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
I G C E R +A K+ EDM P+ + +L+ GLC G A + EEM+
Sbjct: 265 ILGFCREGRXLDACKVLEDMPS-NGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEML 320
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 2/159 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
R + A+ + ++M + S+ TLLN++ K+ L M+ K +PD
Sbjct: 200 RKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIV 259
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN ++ G R DA KV ++M P L+++GTL+ GLC + DEA E+M
Sbjct: 260 HYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEM 319
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ P VF +LI G C VG+L A EM+R+
Sbjct: 320 LSK-GFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRH 357
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 83/191 (43%), Gaps = 3/191 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L R + +L + + VP+ + + +++ R + L+ A ++ M
Sbjct: 191 YRILMQGLCRKSQVNRAVDLLEDML-NKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRM 249
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +NT++ G+ +D L + SP+ SY L+ G
Sbjct: 250 KVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLY 309
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A +EML + P F LI G C +++EA ++ +M+R + + + +
Sbjct: 310 DEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLR-HGEAXHTETWVA 368
Query: 233 LIKGLCAVGEL 243
+I +C V +L
Sbjct: 369 IIPRICEVDKL 379
>gi|295828284|gb|ADG37811.1| AT1G07740-like protein [Neslia paniculata]
Length = 175
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL ++H V E +F +I YG+A ++ A+ VF M+SF+ RT++S N
Sbjct: 2 FDAVDQILRLIRH-RNVRCRESLFMALIQHYGKAGSVDKAVNVFHNMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ +LF + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKNLFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QPT+VT+ +LI LC + +A L EDM++ ++P+A F L+KGLC G
Sbjct: 121 EVQPTVVTYNSLIGFLCRNNDLGKAKSLLEDMIQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|225462369|ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Vitis vinifera]
Length = 393
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 7/222 (3%)
Query: 22 PKLALQLF---KNPNP-NPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
P+ L++F +NP P K F+ N Y L+I KL +A+MFD ++ ++ L
Sbjct: 52 PREVLKIFDGLRNPESVMPVLDSVSKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTL 111
Query: 78 KHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K D + ++ F NVI YG A + A++ +M F+ +VK+FN +LN +++
Sbjct: 112 KIDKQCRLSDVFFYNVIKVYGNVAGQPDRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAK 171
Query: 137 KIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ D + ++ E V DAC NIL+ G S ++ A ++ DE K+R +P + TF
Sbjct: 172 RFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFS 231
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
TL++GLC RV+ AL L E M R V PD VF LI GL
Sbjct: 232 TLMHGLCESGRVEGALGLLERMER-EGVYPDTVVFNILISGL 272
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L R+ D ++L + R P F ++ + +E AL + + M
Sbjct: 196 NILVKGLCRSGNVDAACELLDEYPKQ-RCRPNVRTFSTLMHGLCESGRVEGALGLLERME 254
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
V FN L++ + G+++ +L M+ K P+A SY +++G + + R
Sbjct: 255 REGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFG 314
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
A + +M+ + P+ V++ +IYGLC E V + + + + M+
Sbjct: 315 KAKEFMCQMIDEGVSPSFVSYKMMIYGLCKENLVADVVWILKQMV 359
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 41/252 (16%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK F ++ IL HQ +++ + E+ +++ YG+A +
Sbjct: 12 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNE--ISTEVFAVRLMTLYGKAGMF 69
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNI 161
EHA ++FDE N +RTV SFN LL+ + K D++ FQ + V PD SYNI
Sbjct: 70 EHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPDVVSYNI 129
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------------------ 197
+++ L+ A V DEM K L+P L+TF TL
Sbjct: 130 IVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 189
Query: 198 -----------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ G+ E R+ EA++L D M+ +KPD SL+KG C G L A
Sbjct: 190 VAPNVRSYNAKLRGVISENRMSEAVELI-DEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 248
Query: 247 LGFKEEMVRNKI 258
+ E+ RN++
Sbjct: 249 KRWYSEIARNEL 260
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++ +++ +K FD++ +L + VVP+ + + +++ + L+ AL V
Sbjct: 88 VVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALSVL 147
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
DEM ++ + +FNTLLNA G ++ +M+K V+P+ SYN + G +
Sbjct: 148 DEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISE 207
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ +A ++ DEM ++P + T +L+ G C ++EA + ++ R + P
Sbjct: 208 NRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIAR-NELPPVRAT 266
Query: 230 FASLIKGLCAVGELSLA 246
+ +LI L G+ +A
Sbjct: 267 YMTLIPFLVEKGDFDMA 283
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 41/252 (16%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K FR +Y+ + L +AK ++ IL HQ +++ + E+ +++ YG A +
Sbjct: 51 KRFRSRYGYYEKAVLTLAKAKKLSFIEDILEHQEQYNE--ISTEVFAVRLMTLYGTAGMF 108
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNI 161
+HA ++FDE+ N +RTV SFN LL+A + K D++ FQ + + PD SYNI
Sbjct: 109 DHAHKLFDELPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPGNLGIVPDVVSYNI 168
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------------------ 197
L++ L+ A V DEM K L+P L+TF TL
Sbjct: 169 LVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNN 228
Query: 198 -----------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ G+ E R+ EA++L D M+ +KPD SL+KG C G L A
Sbjct: 229 VAPNVRSYNAKLRGVISENRMSEAVELI-DEMKTSGIKPDVFTLNSLMKGFCNAGNLEEA 287
Query: 247 LGFKEEMVRNKI 258
+ E+ RN++
Sbjct: 288 KRWYSEIARNEL 299
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++ +++ +K FD++ +L + +VP+ + + +++ + L+ AL V
Sbjct: 127 VMSFNALLSACVNSKKFDKIDGFFQELPGNLGIVPDVVSYNILVNAFCEMGSLDSALSVL 186
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
DEM ++ + +FNTLLNA G ++ +M+K V+P+ SYN + G +
Sbjct: 187 DEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVISE 246
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ +A ++ DEM ++P + T +L+ G C ++EA + ++ R + P
Sbjct: 247 NRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIAR-NELPPVRAT 305
Query: 230 FASLIKGLCAVGELSLA 246
+ +LI L G+ +A
Sbjct: 306 YMTLIPFLVEKGDFEMA 322
>gi|147778708|emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
Length = 393
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 7/222 (3%)
Query: 22 PKLALQLF---KNPNP-NPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
P+ L++F +NP P K F+ N Y L+I KL +A+MFD ++ ++ L
Sbjct: 52 PREVLKIFDGLRNPESVMPVLDSVCKRKDFKPNEALYTLVINKLAQARMFDAIEDVIKTL 111
Query: 78 KHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K D + ++ F NVI YG A + A++ +M F+ +VK+FN +LN +++
Sbjct: 112 KIDKQCRLSDVFFYNVIKVYGNVAGRPDRAVETLFDMPKFHCWPSVKTFNLVLNMLVSAK 171
Query: 137 KIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ D + ++ E V DAC NIL+ G S ++ A ++ DE K+R +P + TF
Sbjct: 172 RFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFS 231
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
TL++GLC RV+ AL L E M R V PD VF LI GL
Sbjct: 232 TLMHGLCESGRVEGALGLLERMER-EGVYPDTVVFNILISGL 272
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L R+ D ++L + R P F ++ + +E AL + + M
Sbjct: 196 NILVKGLCRSGNVDAACELLDEYPKQ-RCRPNVRTFSTLMHGLCESGRVEGALGLLERME 254
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
V FN L++ + G+++ +L M+ K P+A SY +++G + + R
Sbjct: 255 REGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFG 314
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
A + +M+ + P+ V++ +IYGLC E V + + + + M+
Sbjct: 315 KAKEFMCQMIDEGVSPSFVSYKMVIYGLCKENLVADVVWILKQMV 359
>gi|224114223|ref|XP_002316701.1| predicted protein [Populus trichocarpa]
gi|222859766|gb|EEE97313.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 129/259 (49%), Gaps = 13/259 (5%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P + L+ L+ +++ K ++ FKN + N + FR + Y I +L ++
Sbjct: 28 PDTAKSLSYLIYKERNHKKLVKKFKNASVNEH---------FRTKVAIYKETIRRLSVSR 78
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
FD V++IL K + + +E +IS YG + +HA +VFDEM RTV SF
Sbjct: 79 KFDYVEEILEDQKQ-YKDMSKEGFNARLISLYGSVGMFDHARKVFDEMRERQCARTVMSF 137
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LL A L+ D + LF+ + K + PD SYN ++ L+ A + DEM
Sbjct: 138 NALLGACLSSKNFDEVEGLFRGLSKEIKIEPDLISYNTVIKAFCEMGSLDSAVSLLDEMK 197
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++ L+P L+TF TL++G + R + ++ E M+ NV+PD + + + + GL +
Sbjct: 198 RKGLEPDLITFNTLLHGFYAKGRFVDGERIWE-QMKEKNVEPDVRSYNAKLLGLTLEKRM 256
Query: 244 SLALGFKEEMVRNKIEMDA 262
+ EEM I++D
Sbjct: 257 EDVVKVVEEMKSEGIQLDT 275
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+K FDEV+ + L + ++ P+ I + VI + L+ A+ + DEM ++ +
Sbjct: 147 SKNFDEVEGLFRGLSKEIKIEPDLISYNTVIKAFCEMGSLDSAVSLLDEMKRKGLEPDLI 206
Query: 124 SFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNTLL+ G+ +D Q+ EK V PD SYN + G + +R+ED KV +EM
Sbjct: 207 TFNTLLHGFYAKGRFVDGERIWEQMKEKNVEPDVRSYNAKLLGLTLEKRMEDVVKVVEEM 266
Query: 183 LKRRLQPTLVTFGTLIYGLCLE 204
+Q ++ LI G E
Sbjct: 267 KSEGIQLDTFSYSALIRGFVNE 288
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 119/256 (46%), Gaps = 39/256 (15%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + + E +IS YG+
Sbjct: 56 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 114
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDAC 157
+ + +HA +VFDEM +R+V SFN LL A + K D++ FQ + V PD
Sbjct: 115 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKIDGFFQELPGNLGVVPDVV 174
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL-------------------- 197
SYNI+++ L+ A V DEM K L+P L+TF TL
Sbjct: 175 SYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLM 234
Query: 198 ---------------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ G+ E R+ EA++L D M+ +KPD SL+KG C G
Sbjct: 235 KKNNVAPNVRSYNAKLRGVISENRMSEAVELI-DEMKTSGIKPDVFTLNSLMKGFCNAGN 293
Query: 243 LSLALGFKEEMVRNKI 258
L A + E+ RN++
Sbjct: 294 LEEAKRWYSEIARNEL 309
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L ++ ++ +K FD++ +L + VVP+ + + +++ + L+ AL V
Sbjct: 136 SVLSFNALLGACVHSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALSV 195
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM ++ + +FNTLLNA G ++ +M+K V+P+ SYN + G +
Sbjct: 196 LDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVIS 255
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+ +A ++ DEM ++P + T +L+ G C ++EA + ++ R + P
Sbjct: 256 ENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIAR-NELPPVRA 314
Query: 229 VFASLIKGLCAVGELSLA 246
+ +LI L G+ +A
Sbjct: 315 TYMTLIPFLVEKGDFDMA 332
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+KP +L+ + +I R D L +++ +VP+ +I+ VI + RA L+
Sbjct: 231 IKP---DLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLM 286
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSY 159
AL+V DEM V ++NTLLN + K R+ D L ++ E+ V PD C++
Sbjct: 287 SDALRVRDEMVGCGCLPDVVTYNTLLNGLC---KERRLLDAEGLLNEMRERGVPPDLCTF 343
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+HG + +L+ A ++FD ML +RL+P +VT+ TLI G+C + +D+A L +D M
Sbjct: 344 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD-MH 402
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ P+ ++ LI C G++ A GF +EM+ I
Sbjct: 403 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 441
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ ++ L R+ M+D+ ++ ++ D V P+ F +I + R
Sbjct: 158 SKGLKP---GIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRV 213
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+E AL+++ EM ++ + SF+ L+ GK+D + M + + PD Y
Sbjct: 214 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 273
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ G + + DA +V DEM+ P +VT+ TL+ GLC E R+ +A L +M R
Sbjct: 274 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM-R 332
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD F +LI G C G+L AL + M+ ++ D
Sbjct: 333 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 374
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + Q L+P +++ Y+ +I + R D+ + + H +
Sbjct: 359 ALQLF-------DTMLNQRLRP---DIVTYNTLIDGMCRQGDLDKANDLWDDM-HSREIF 407
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +E A DEM + + + ++N+++ G + +
Sbjct: 408 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 467
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q +M VSPD +YN L+HG + ++ DA+K+ + M K ++QP +VT+ LI G +
Sbjct: 468 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V EA + E M ++PD + S+I G G A +EM++ E
Sbjct: 528 HGNVQEAGWIFEKMC-AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKE 582
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 36/247 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + + + + +L++++ + V P+ F +I Y L+ ALQ+
Sbjct: 304 DVVTYNTLLNGLCKERRLLDAEGLLNEMR-ERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD M + ++ + ++NTL++ M G +D+ DL+ M + + P+ +Y+IL+
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 422
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK---------------- 212
++EDA+ DEM+ + + P ++T+ ++I G C V + K
Sbjct: 423 KGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLIT 482
Query: 213 --------LKED----------MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KED MM V+PD + LI G G + A E+M
Sbjct: 483 YNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMC 542
Query: 255 RNKIEMD 261
IE D
Sbjct: 543 AKGIEPD 549
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
RA A + + S N + + N +++ + D++ + MEK V PD
Sbjct: 72 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 131
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++N+++ + E A + D M+ + L+P +VT+ +++ GLC D+A ++ ++M
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 191
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V PD + F LI G C VGE+ AL +EM I+ D
Sbjct: 192 -DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 234
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
Y +A + V EM V V + N +++A G + L M K + P
Sbjct: 105 YCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 164
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN ++ G S + AW+VF EM + P + +F LI G C ++EALK+ +
Sbjct: 165 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 224
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ MR +KPD F+ LI G++ A+ + EM
Sbjct: 225 E-MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261
>gi|297830004|ref|XP_002882884.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328724|gb|EFH59143.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 409
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKMFDE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALLINKFGQAKMFDEIEEVMSTIKLEKRCRFSEDFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M F + KSFN +LN +++ D + +F K V DAC NIL+ G S
Sbjct: 158 MPDFGCWPSAKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
LE A ++ DE K++ +P ++TF LI G C + + +EA KL E M + ++PD F
Sbjct: 218 LEAALQLLDEFPKQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK-ERIEPDTITFN 276
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
LI GL G + + E M
Sbjct: 277 ILISGLRKKGRVEEGIDLLERM 298
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV---ISFYGRARLLEHALQVF 110
++ I+ L AK+FDE+ +I + EI C + I + LE ALQ+
Sbjct: 170 FNFILNLLVSAKLFDEIHKIFVSAPK----LGVEIDACCLNILIKGLCESGNLEAALQLL 225
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVS 169
DE + V +F+ L+ GK + L + MEK + PD ++NIL+ G
Sbjct: 226 DEFPKQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKK 285
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+E+ + + M + +P T+ ++YGL + R EA ++ M+ + ++P
Sbjct: 286 GRVEEGIDLLERMKLKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMIS-WGMRPSFLS 344
Query: 230 FASLIKGLC---AVGELSLAL 247
+ ++ GLC +V E+ L
Sbjct: 345 YKKMVLGLCETKSVAEMDWVL 365
>gi|21617993|gb|AAM67043.1| unknown [Arabidopsis thaliana]
Length = 394
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 49/291 (16%)
Query: 4 AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L+ ++DPK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
AK F+ V++IL + + E + +I+ YGR + E+A +VFDEM N +RTV
Sbjct: 83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTV 141
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180
SFN LLNA + K D + +F+ + +S PD SYN L+ G +A + D
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIFEELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALID 201
Query: 181 EMLKRRLQPTLVTFGTLIY-----------------------------------GLCLEL 205
E+ + L+P +TF L++ GL +E
Sbjct: 202 EIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMEN 261
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +E + L D ++ +KPD F ++IKG + G+L A+ + +E+ +N
Sbjct: 262 KSEEMVSLF-DKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKN 311
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 109/221 (49%), Gaps = 4/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRAR 101
P + + +L ++ ++ +K FD V+ I +L + P+ + +I G+
Sbjct: 133 PERNCKRTVLSFNALLNACVNSKKFDLVEGIFEELPGKLSIEPDVASYNTLIKGLCGKGS 192
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
E A+ + DE+ + ++ +FN LL+ T GK + ++ +++EK V D SYN
Sbjct: 193 FTE-AVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYN 251
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + + E+ +FD++ L+P + TF +I G E ++DEA+ +++ +
Sbjct: 252 ARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK- 310
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P VF SL+ +C G+L A +E+ ++ +D
Sbjct: 311 NGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVD 351
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 12/219 (5%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+KP +L+ + +I R D L +++ +VP+ +I+ VI + RA L+
Sbjct: 292 IKP---DLVSFSCLIGLFARRGKMDHAMAYLREMRC-FGLVPDGVIYTMVIGGFCRAGLM 347
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSY 159
AL+V DEM V ++NTLLN + K R+ D L ++ E+ V PD C++
Sbjct: 348 SDALRVRDEMVGCGCLPDVVTYNTLLNGLC---KERRLLDAEGLLNEMRERGVPPDLCTF 404
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+HG + +L+ A ++FD ML +RL+P +VT+ TLI G+C + +D+A L +D M
Sbjct: 405 TTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDD-MH 463
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ P+ ++ LI C G++ A GF +EM+ I
Sbjct: 464 SREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 502
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 6/222 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ ++ L R+ M+D+ ++ ++ D V P+ F +I + R
Sbjct: 219 SKGLKP---GIVTYNSVLKGLCRSGMWDKAWEVFKEMD-DFGVAPDVRSFTILIGGFCRV 274
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+E AL+++ EM ++ + SF+ L+ GK+D + M + + PD Y
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ G + + DA +V DEM+ P +VT+ TL+ GLC E R+ +A L +M R
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEM-R 393
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD F +LI G C G+L AL + M+ ++ D
Sbjct: 394 ERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 435
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 109/238 (45%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + Q L+P +++ Y+ +I + R D+ + + H +
Sbjct: 420 ALQLF-------DTMLNQRLRP---DIVTYNTLIDGMCRQGDLDKANDLWDDM-HSREIF 468
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +E A DEM + + + ++N+++ G + +
Sbjct: 469 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 528
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q +M VSPD +YN L+HG + ++ DA+K+ + M K ++QP +VT+ LI G +
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V EA + E M ++PD + S+I G G A +EM++ D
Sbjct: 589 HGNVQEAGWIFEKMC-AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
RA A + + S N + + N +++ + D++ + MEK V PD
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVV 192
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++N+++ + E A + D M+ + L+P +VT+ +++ GLC D+A ++ ++M
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEM 252
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V PD + F LI G C VGE+ AL +EM I+ D
Sbjct: 253 -DDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPD 295
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
Y +A + V EM V V + N +++A G + L M K + P
Sbjct: 166 YCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPG 225
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN ++ G S + AW+VF EM + P + +F LI G C ++EALK+ +
Sbjct: 226 IVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYK 285
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ MR +KPD F+ LI G++ A+ + EM
Sbjct: 286 E-MRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 133/258 (51%), Gaps = 14/258 (5%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S +L++ +KDP+ AL++F N Q K F +N Y +I KL
Sbjct: 53 KCKFISHESAINLIKREKDPQHALEIF-------NMVGEQ--KGFNHNHATYSTLIHKLA 103
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-T 121
+ K F V +LHQ+ ++T E I F N++ + ++ L E L++F + ++ +
Sbjct: 104 QTKKFHAVDALLHQMTYETCKFHENI-FLNLMKHFYKSSLHERVLEMFYAIQPIVREKPS 162
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVF 179
+K+ +T LN ++ +ID + ++ V P+ C +NIL+ S LE A +V
Sbjct: 163 LKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVM 222
Query: 180 DEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
EM K RR P ++T+ TLI GLC R+ EA++L E+M+ + PDA ++ LIKG C
Sbjct: 223 HEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFC 282
Query: 239 AVGELSLALGFKEEMVRN 256
G+ A E M N
Sbjct: 283 HGGKADRARKIMEFMRSN 300
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHA 106
R N +++++ ++ + +++H++K R P I + +I G RL E A
Sbjct: 196 RPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKE-A 254
Query: 107 LQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
+++F+EM S + + +++ L+ GK DR + + M P+ +Y++LM+
Sbjct: 255 IELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMN 314
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G RLE+A +VFDEM L+P V + TLI C R+DEA++L ++M + K
Sbjct: 315 GFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEM-KCK 373
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
DA F L+KGLC G AL E + + ++
Sbjct: 374 ADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLN 410
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 4/224 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
QP+ + +L + L +K D Q+ L + +V P IF ++ + ++
Sbjct: 154 QPIVREKPSLKAISTCLNILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSG 213
Query: 102 LLEHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACS 158
LE AL+V EM S V +++TL++ + G++ +LF+ M + + PDA +
Sbjct: 214 DLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALT 273
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y++L+ G + + A K+ + M P + + L+ G C E R++EA ++ D M
Sbjct: 274 YSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVF-DEM 332
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +KPD + +LI C VG + A+ +EM K + DA
Sbjct: 333 KSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADA 376
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 12/254 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LALQ+F ++ P F +N Y I+ KL RA+ FD
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 100
Query: 69 EVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
V+ ++ L++ + E +F +++ YG A E ++++F + F V+R+V+S NT
Sbjct: 101 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 160
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN ++ + D + +F+ ++ ++P+ + N+L+ +E A+KV DE+
Sbjct: 161 LLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L P LVT+ T++ G ++ A ++ E+M+ PDA + L+ G C +G S
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSE 279
Query: 246 ALGFKEEMVRNKIE 259
A ++M +N+IE
Sbjct: 280 AATVMDDMEKNEIE 293
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
FD V + K + P I CN+ + + +E A +V DE+ S + + ++
Sbjct: 171 FDLVHAMFKNSKESFGITPN-IFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTY 229
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
T+L + G ++ + + ++++ PDA +Y +LM G R +A V D+M K
Sbjct: 230 TTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 289
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P VT+G +I LC E + EA + ++M+ + PD+ + +I LC ++
Sbjct: 290 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLE-RSFMPDSSLCCKVIDALCEDHKVD 348
Query: 245 LALGFKEEMVRN 256
A G +M++N
Sbjct: 349 EACGLWRKMLKN 360
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 5/206 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++ E ++P N + Y ++I L + K E + + ++ + +P+ + C VI
Sbjct: 285 DDMEKNEIEP---NEVTYGVMIRALCKEKKSGEARNMFDEMLERS-FMPDSSLCCKVIDA 340
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
++ A ++ +M N +TL++ + G++ LF EK P
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSL 400
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G L +A +++D+M +R+ +P T+ LI GL V E +++ E+
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEE 460
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242
M+ + P+ F L +GL +G+
Sbjct: 461 MLEI-GCFPNKTTFLILFEGLQKLGK 485
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
NL+ Y I+ + R M + +++L ++ D P+ + ++ Y + A
Sbjct: 225 NLVTYTTILGGYVARGDM-ESAKRVLEEM-LDRGWYPDATTYTVLMDGYCKLGRFSEAAT 282
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
V D+M ++ ++ ++ A+ K ++F +++E+ PD+ ++
Sbjct: 283 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALC 342
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++++A ++ +MLK P TLI+ LC E RV EA KL ++ + P
Sbjct: 343 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSL 400
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI G+C GEL+ A ++M K + +A
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNA 435
>gi|295828278|gb|ADG37808.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFDXAKDXRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|345288471|gb|AEN80727.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288473|gb|AEN80728.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288475|gb|AEN80729.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288477|gb|AEN80730.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288479|gb|AEN80731.1| AT1G07740-like protein, partial [Capsella rubella]
gi|345288483|gb|AEN80733.1| AT1G07740-like protein, partial [Capsella rubella]
Length = 177
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 3 FDAVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFHKMTSFDCVRTIQSLN 61
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 62 TLINVLVDNSELEKAKSFFDGAKDLRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 121
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G+
Sbjct: 122 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKGD 177
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ +I+ VI + RA L+ AL+V DEM V ++NTLLN + K R+
Sbjct: 12 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC---KERRLL 68
Query: 143 D----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D L ++ E+ V PD C++ L+HG + +L+ A ++FD ML +RL+P +VT+ TLI
Sbjct: 69 DAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLI 128
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
G+C + +D+A L +D M + P+ ++ LI C G++ A GF +EM+ I
Sbjct: 129 DGMCRQGDLDKANDLWDD-MHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 187
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 13/232 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + Q L+P +++ Y+ +I + R D+ + + H +
Sbjct: 105 ALQLF-------DTMLNQRLRP---DIVTYNTLIDGMCRQGDLDKANDLWDDM-HSREIF 153
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +E A DEM + + + ++N+++ G + +
Sbjct: 154 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 213
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q +M VSPD +YN L+HG + ++ DA+K+ + M K ++QP +VT+ LI G +
Sbjct: 214 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 273
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V EA + E M ++PD + S+I G G A +EM++
Sbjct: 274 HGNVQEAGWIFEKMC-AKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ 324
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD Y +++ G + + DA +V DEM+ P +VT+ TL+ GLC E R+ +A L
Sbjct: 14 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M R V PD F +LI G C G+L AL + M+ ++ D
Sbjct: 74 LNEM-RERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPD 120
>gi|18399887|ref|NP_566445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273726|sp|Q9LK57.1|PP226_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g13160, mitochondrial; Flags: Precursor
gi|10172603|dbj|BAB01407.1| unnamed protein product [Arabidopsis thaliana]
gi|22531265|gb|AAM97136.1| expressed protein [Arabidopsis thaliana]
gi|27311983|gb|AAO00957.1| expressed protein [Arabidopsis thaliana]
gi|332641782|gb|AEE75303.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 394
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 49/291 (16%)
Query: 4 AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L+ ++DPK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
AK F+ V++IL + + E + +I+ YGR + E+A +VFDEM N +RT
Sbjct: 83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180
SFN LLNA + K D + +F+ + +S PD SYN L+ G +A + D
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALID 201
Query: 181 EMLKRRLQPTLVTFGTLIY-----------------------------------GLCLEL 205
E+ + L+P +TF L++ GL +E
Sbjct: 202 EIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMEN 261
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +E + L D ++ +KPD F ++IKG + G+L A+ + +E+ +N
Sbjct: 262 KSEEMVSLF-DKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKN 311
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRAR 101
P + + L ++ ++ +K FD V+ I +L + P+ + +I G+
Sbjct: 133 PERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGS 192
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
E A+ + DE+ + ++ +FN LL+ T GK + ++ +++EK V D SYN
Sbjct: 193 FTE-AVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYN 251
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + + E+ +FD++ L+P + TF +I G E ++DEA+ +++ +
Sbjct: 252 ARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK- 310
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P VF SL+ +C G+L A +E+ ++ +D
Sbjct: 311 NGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVD 351
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ R M E + +L ++K + +VP + ++S Y R ++ A V + M
Sbjct: 247 YNTLLNAHCRKGMLGEARTLLARMKKEG-IVPTRATYNTLVSAYARLGWIKQATDVVEAM 305
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRR 171
++F + + ++N L + GK+D L ME+ VSPD +YN L+ C +R
Sbjct: 306 TAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQR 365
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
DA + +EM ++ ++ +LVT ++ GLC E +++EAL + +MM + PD +
Sbjct: 366 SSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALG-RLEMMTEEGLTPDVITYN 424
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI C G ++ A +EMVR+ ++MD
Sbjct: 425 TLIDASCKAGNVAKAFVLMDEMVRSGLKMD 454
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 116/216 (53%), Gaps = 8/216 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F N L Y+L + K ++E +++L + VP+E+ + V++ Y + E A
Sbjct: 456 FTLNTLLYNLC-----KEKRYEEAEELL-RAPPQRGFVPDEVSYGTVMAAYFKEYKPEPA 509
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
L ++DEM + ++ ++NTL+ + T GK+ D L ++ME + PD +YNI++H
Sbjct: 510 LCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHA 569
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
LE A++ ++M++ +P +VT TL+ GLCL R+++A+KL E + K
Sbjct: 570 YCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVE-KGKKV 628
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI+ LC ++ AL F +M ++ D
Sbjct: 629 DVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPD 664
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F ++ + L AL +M F + ++NTLLNA G +
Sbjct: 204 RLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 263
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L M+K + P +YN L+ ++ A V + M +P L T+ L G
Sbjct: 264 RTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAG 323
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC +VDEA KLK++M ++ V PD + +L+ S AL EEM
Sbjct: 324 LCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEM 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA F +L Y+++ L +A DE ++ +++ V P+ + + ++ +
Sbjct: 303 EAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFK 362
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ AL + +EM V+ ++ + N ++ + G+++ ++M E+ ++PD +
Sbjct: 363 CQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVIT 422
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ + + A+ + DEM++ L+ T TL+Y LC E R +EA E+++
Sbjct: 423 YNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEA----EELL 478
Query: 219 RV---YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R PD + +++ + AL +EM++ K+
Sbjct: 479 RAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKL 521
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 37/244 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L E L++L + +VP++ + +I Y + LE A Q ++M
Sbjct: 528 YNTLIKGLSTMGKLTEAIDKLNELM-EMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKM 586
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + NTL+N + G++++ LF+ +EK D +YN L+ +
Sbjct: 587 VENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDV 646
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 213
+ A + F +M R LQP + T+ L+ L R EA K+
Sbjct: 647 DTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESGKLYGRFFYPSI 706
Query: 214 ---------------KEDMMRVYNVKPDAQ-VFASLIKGLCAVGELSLALGFKEEMVRNK 257
K D+ V N + D Q + IK LC G+L A +EM++
Sbjct: 707 KSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKG 766
Query: 258 IEMD 261
+ +D
Sbjct: 767 MSVD 770
>gi|345288481|gb|AEN80732.1| AT1G07740-like protein, partial [Capsella rubella]
Length = 177
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 3 FDAVDQILRLIRY-RNVRCRESLFIALIQHYGKAGSVDKAVDVFHKMTSFDCVRTIQSLN 61
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 62 TLINVLVDNSELEKAKTFFDGAKDLRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 121
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G+
Sbjct: 122 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKGD 177
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 15/224 (6%)
Query: 40 EAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93
EAQ L + N+ Y +II + +E ++ ++ ++ VP + F +
Sbjct: 226 EAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI-ESNCVPNAVTFNTL 284
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC---GKIDRMTDLFQIMEK 150
I+ + +A +LE A+++F EM + T+ ++NTL++++ C G + DLF +E
Sbjct: 285 IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSL--CKKRGGVYTAVDLFNKLEG 342
Query: 151 Y-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
++P +YN L+ G +RRL +A + FDEM + + P ++T+ LI GLC R+ E
Sbjct: 343 AGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEM-EGKCAPNVITYSILIDGLCKVRRMKE 401
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
A K ED M+ + P + LI G C GEL AL F E+M
Sbjct: 402 AAKTLED-MKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKM 444
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 10/204 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E L P ++ Y+ +I A+ E Q ++ + + P I + +I
Sbjct: 338 NKLEGAGLTP---TIVTYNSLIQGFCDARRLSEAMQYFDEM--EGKCAPNVITYSILIDG 392
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ R ++ A + ++M + TV ++ L+N CG++ F+ M+ +P+
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+N L+ G + R D ++ M +P ++T+ LI GLC RV++A +L +
Sbjct: 453 TVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFD 512
Query: 216 DMMRVYNVKPDAQVFASLIKGLCA 239
M P+ F LI+GLCA
Sbjct: 513 GMA----CAPNVTTFNFLIRGLCA 532
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 38/174 (21%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A LE A++ F EM + V+ ++S++ LL+A+ G++ LF M SPD +Y
Sbjct: 154 ANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT--CSPDIMTY 211
Query: 160 NILMHG-CVVSR----------------------------------RLEDAWKVFDEMLK 184
N+LM G C + + ++E+AW+VF +M++
Sbjct: 212 NVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIE 271
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
P VTF TLI G C +++A+KL +M ++ K + +LI LC
Sbjct: 272 SNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKI-GCKATIVTYNTLIDSLC 324
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++I L + + E + L +K P + + +I+ + + L+ AL
Sbjct: 382 NVITYSILIDGLCKVRRMKEAAKTLEDMKAHG-YTPTVVTYGGLINGFCKCGELKSALLF 440
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHG 165
F++M FNTL++ + K +R D L + + PD +YN L+ G
Sbjct: 441 FEKMKLAGCAPNTVIFNTLIDGLC---KAERANDGLRLLCHMHAEGCKPDVITYNCLISG 497
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ R+EDA ++FD M P + TF LI GLC + +V+EA
Sbjct: 498 LCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEA 539
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 126 NTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N LL+ +++ K D+ LF +++ +P+A +YN+L+ G ++ A VF +M
Sbjct: 1 NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
L P T TL+ GLC ++ ALKL + M+ P + L++G G +
Sbjct: 61 SGLLPNASTMNTLLLGLCEIGQMSSALKLFRE-MQAGPFLPTSASHNILLRGFFMAGRVR 119
Query: 245 LALGFKEEMVRNK 257
AL ++M ++
Sbjct: 120 DALAHLQDMRKSS 132
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNI 161
+ AL++F EM + T S N LL G++ Q M K S A +YN+
Sbjct: 83 MSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNL 142
Query: 162 LMHGCV----VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++ G + RLE A + F EM ++P L ++ L+ L R+ EA L M
Sbjct: 143 VLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAM 202
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD + L+ G C +G+ A +E+++ E
Sbjct: 203 ----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE 240
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
AR + AL++F E+ + ++N L+ G++ + +F M+ + P+A +
Sbjct: 10 ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 69
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
N L+ G ++ A K+F EM PT + L+ G + RV +AL +D M
Sbjct: 70 MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQD-M 128
Query: 219 RVYNVKPDAQVFASLIKGLC----AVGELSLALGFKEEMVRNKIEMD 261
R + + ++KGLC + L A+ F +EM + +E D
Sbjct: 129 RKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPD 175
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 77/193 (39%), Gaps = 41/193 (21%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML----TCGKIDRMTDLFQIMEKY-V 152
GR R AL +M + ++N +L + + ++++ + F+ M+ V
Sbjct: 116 GRVR---DALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGV 172
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFD-------------------------------- 180
PD SY+IL+ S R+ +A +F
Sbjct: 173 EPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMK 232
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
E+LK +P + T+ +I C +V+EA ++ M+ N P+A F +LI G C
Sbjct: 233 EILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIES-NCVPNAVTFNTLIAGFCKA 291
Query: 241 GELSLALGFKEEM 253
G L A+ EM
Sbjct: 292 GMLEDAIKLFAEM 304
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 12/254 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LALQ+F ++ P F +N Y I+ KL RA+ FD
Sbjct: 47 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 98
Query: 69 EVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
V+ ++ L++ + E +F +++ YG A E ++++F + F V+R+V+S NT
Sbjct: 99 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 158
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN ++ + D + +F+ ++ ++P+ + N+L+ +E A+KV DE+
Sbjct: 159 LLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAM 218
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L P LVT+ T++ G ++ A ++ E+M+ PDA + L+ G C +G S
Sbjct: 219 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDAITYTVLMDGYCKLGRFSE 277
Query: 246 ALGFKEEMVRNKIE 259
A ++M +N+IE
Sbjct: 278 AATVMDDMEKNEIE 291
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
FD V + K + P I CN+ + + +E A +V DE+ + + + ++
Sbjct: 169 FDLVHAMFKNSKESFGITPN-IFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTY 227
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
T+L + G ++ + + ++++ PDA +Y +LM G R +A V D+M K
Sbjct: 228 TTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEK 287
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P VT+G +I LC E + EA + ++M+ + PD+ + +I LC ++
Sbjct: 288 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLD-RSFMPDSSLCCKVIDALCEDHKVD 346
Query: 245 LALGFKEEMVRN 256
A G +M++N
Sbjct: 347 EACGLWRKMLKN 358
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 95/206 (46%), Gaps = 5/206 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++ E ++P N + Y ++I L + K E + + ++ D +P+ + C VI
Sbjct: 283 DDMEKNEIEP---NEVTYGVMIRALCKEKKSGEARNMFDEM-LDRSFMPDSSLCCKVIDA 338
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
++ A ++ +M N +TL++ + G++ LF +K P
Sbjct: 339 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDKGSIPSL 398
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G L +A +++D+M +R+ +P T+ LI GL V E +++ E+
Sbjct: 399 LTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEE 458
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242
M+ P+ F L +GL +G+
Sbjct: 459 MLES-GCFPNKTTFLILFEGLQKLGK 483
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
NL+ Y I+ + R M + +++L ++ D P+ I + ++ Y + A
Sbjct: 223 NLVTYTTILGGYVARGDM-ESAKRVLEEM-LDRGWYPDAITYTVLMDGYCKLGRFSEAAT 280
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
V D+M ++ ++ ++ A+ K ++F +++++ PD+ ++
Sbjct: 281 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALC 340
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++++A ++ +MLK P TLI+ LC E RV EA KL ++ + P
Sbjct: 341 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEFDK--GSIPSL 398
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI G+C GEL+ A ++M K + +A
Sbjct: 399 LTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNA 433
>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 39/254 (15%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + + E +I+ YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLITLYGK 106
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC 157
+ + +HA +VFDEM +R+V SFN LL A + K D++ F + +S PD
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL-------------------- 197
SYNI+++G ++ A + DEM K+ L+P L+TF TL
Sbjct: 167 SYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRM 226
Query: 198 ---------------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ GL E R+ E + L E+ M+ +KPD F +LIKG C G+
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSEKRMLEGIGLVEE-MQTKGIKPDGYSFNALIKGFCNDGK 285
Query: 243 LSLALGFKEEMVRN 256
+ A + +M N
Sbjct: 286 VDEATNWYGKMREN 299
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 81/167 (48%), Gaps = 6/167 (3%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPD 155
R R L+ +Q F + S + RT + + + + + + ++ + +KY +S +
Sbjct: 35 RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94
Query: 156 ACSYN-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ I ++G S + A+KVFDEM ++ + ++++F L+ + D+
Sbjct: 95 GFAVRLITLYG--KSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFF 152
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +V+PD + +I GLC +G + A+G +EM + +E D
Sbjct: 153 SELPSKLSVEPDLVSYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPD 199
>gi|295828282|gb|ADG37810.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDAVDQILXLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFDXAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRXNDLGKAKXLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|295828272|gb|ADG37805.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 106/176 (60%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDAVDQILRLIRY-RNVRCRESLFMALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S+NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFXXAKDXRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRKNDLGKAKCLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 9/210 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I R D L ++K +VP+ +I+ VI + RA + AL+V
Sbjct: 296 DVVSFSCLIGLFSRRGEMDHAGAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHG 165
DEM F V ++NTLLN + K R+ D L ++ E+ V+PD C++ L+HG
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLC---KQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHG 411
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
E+A ++FD +L++RL+P +VT+ +LI G+C + + +A +L +D M + P
Sbjct: 412 YCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDD-MHAREILP 470
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ ++ LI C G++ A GF +EMV+
Sbjct: 471 NHITYSILIDSHCEKGQVEDAFGFLDEMVK 500
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP ++ Y+ ++ L + + FD+ +++ + V P+ F +I + R +
Sbjct: 223 LKP---GIVTYNSVLKGLCKHRRFDKAKEVFRTMDQ-CSVAPDVRSFNILIGGFCRVGEV 278
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A++ + EM V V SF+ L+ G++D + M+ + PD Y ++
Sbjct: 279 KEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMV 338
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + +A +V DEM+ P +VT+ TL+ GLC + R+ +A KL +M
Sbjct: 339 IGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEE-RG 397
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD F +LI G C G AL + ++R ++ D
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPD 436
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 101/191 (52%), Gaps = 7/191 (3%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
FD ++ ++ + R V +++ NV I RA ++ A+ + D M++ ++ + ++
Sbjct: 173 FDGADTVISEM--EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTY 230
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N++L + + D+ ++F+ M++ V+PD S+NIL+ G +++A K + EM
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQH 290
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
R + P +V+F LI +D A L+E M+ + PD ++ +I G C G +
Sbjct: 291 RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE--MKGLGLVPDGVIYTMVIGGFCRAGSM 348
Query: 244 SLALGFKEEMV 254
S AL ++EMV
Sbjct: 349 SEALRVRDEMV 359
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 104/238 (43%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + Q L+P +++ Y+ +I + R + ++ + H ++
Sbjct: 421 ALQLF-------DTLLRQRLRP---DVVTYNSLIDGMCRKGDLAKANELWDDM-HAREIL 469
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +I + +E A DEM ++++N+++ G + +
Sbjct: 470 PNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQF 529
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q M + V PD ++N L+HG + + A+ VF+ M K ++P VT+ +I G
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSE 589
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A ++ + M ++PD + SLI G G A +EM+ D
Sbjct: 590 QGNMQDAGRVFKGMGDS-GIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPD 646
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+ N ++++ + D + MEK V PD ++N+L+ + ++ A + D M
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
R L+P +VT+ +++ GLC R D+A ++ M + +V PD + F LI G C VGE
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQC-SVAPDVRSFNILIGGFCRVGE 277
Query: 243 LSLALGFKEEMVRNKIEMD 261
+ A+ F +EM + D
Sbjct: 278 VKEAVKFYKEMQHRYVTPD 296
>gi|357472349|ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507514|gb|AES88656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 418
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 139/269 (51%), Gaps = 26/269 (9%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L +++ Q+DP + L+LF + P FR+N + + I KLG AKM+
Sbjct: 96 TPEELRNVIANQRDPLVCLELFHWASHQPR---------FRHNESSFHVTIKKLGDAKMY 146
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-----SFNVQRTV 122
E+ +++QL R + E +F +I ++ AR L A+ VF M +F + ++
Sbjct: 147 QEMDDVVNQLL-AVRSIGNEALFNMIIYYFTEARKLTRAVIVFKHMKCSRNPNFGFRPSI 205
Query: 123 KSFNTLLNAMLTCG--------KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
+++N L A L+ G ++ M LF Q++ +++ PD S N ++ G V+S +
Sbjct: 206 RTYNILFGAFLSRGYNTHINLVYMETMRCLFRQMVNEHIEPDIFSLNSMIKGYVLSLHVN 265
Query: 174 DAWKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA ++F +M + +P +T+ LI+GLC + R + A +L + M+ P ++ + S
Sbjct: 266 DALRIFHQMGVVYDCKPNSLTYDYLIHGLCAKGRTENAKELYHE-MKAKGFVPSSKSYNS 324
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ L VG++ A+ + EM + +D
Sbjct: 325 LVNSLALVGDVEEAVNYLWEMTEKQKSVD 353
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 106 ALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL++F +M ++ + +++ L++ + G+ + +L+ M+ K P + SYN L+
Sbjct: 267 ALRIFHQMGVVYDCKPNSLTYDYLIHGLCAKGRTENAKELYHEMKAKGFVPSSKSYNSLV 326
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ + +E+A EM +++ +T+ T++ +C RV EA++ +++
Sbjct: 327 NSLALVGDVEEAVNYLWEMTEKQKSVDFITYRTVLDEICRRGRVQEAMRFLQEL 380
>gi|295828274|gb|ADG37806.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFXKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFDXAKXMRLRPNSVSXNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|224056581|ref|XP_002298921.1| predicted protein [Populus trichocarpa]
gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 121/240 (50%), Gaps = 10/240 (4%)
Query: 22 PKLALQLFKNPNPNPNN-----TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ 76
P +++F+N +PN+ + K ++ N Y +I KL +AK FD ++ I+ +
Sbjct: 10 PNEVIKIFENLK-DPNSIISVWNQYSKRKDYKPNEALYTQVINKLAQAKNFDAIEDIMQK 68
Query: 77 LKHDTRVVPEEIIFCNVISFYGR--ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+K D F NVI YG+ R+ + +FD +N VKSFN +LN +++
Sbjct: 69 IKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVS 128
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
D + +++ Q + D CS NIL+ G + LE A+ V DE K+R +P + T
Sbjct: 129 AKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRT 188
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TL++GLC + +VDEA L E M + + D F LI GL G++ L E M
Sbjct: 189 FSTLMHGLCKKGKVDEAFGLLERMEK-EGIDADTITFNILISGLRKQGKVVEGLELLERM 247
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV---ISFYGRARLLEHA 106
N+ ++L++ L AK+FD ++H++ ++ EI C++ I LE A
Sbjct: 115 NVKSFNLVLNLLVSAKVFD----VVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAA 170
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--------------- 151
V DE + V++F+TL++ + GK+D L + MEK
Sbjct: 171 FNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKEGIDADTITFNILISG 230
Query: 152 ---------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
P+A SY +++G + + + + + M+ + + P+
Sbjct: 231 LRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPS 290
Query: 191 LVTFGTLIYGLCLE 204
V++ L++GLC E
Sbjct: 291 FVSYKKLVHGLCKE 304
>gi|295828276|gb|ADG37807.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 105/176 (59%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + + P++ S NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFDEAKDMRLRPNSVSXNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|15231886|ref|NP_188076.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274210|sp|Q9LUD6.1|PP230_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g14580, mitochondrial; Flags: Precursor
gi|9294380|dbj|BAB02390.1| unnamed protein product [Arabidopsis thaliana]
gi|119935972|gb|ABM06049.1| At3g14580 [Arabidopsis thaliana]
gi|332642020|gb|AEE75541.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKM+DE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M F + KSFN +LN +++ D + +F K V DAC NIL+ G S
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
LE A ++ DE +++ +P ++TF LI G C + + +EA KL E M + ++PD F
Sbjct: 218 LEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK-ERIEPDTITFN 276
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
LI GL G + + E M
Sbjct: 277 ILISGLRKKGRVEEGIDLLERM 298
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV---ISFYGRARLLEHALQVF 110
++ I+ L AK+FDE+ +I + EI C + I + LE ALQ+
Sbjct: 170 FNFILNLLVSAKLFDEIHKIFVSAPK----LGVEIDACCLNILIKGLCESGNLEAALQLL 225
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVS 169
DE + V +F+ L+ GK + L + MEK + PD ++NIL+ G
Sbjct: 226 DEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKK 285
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+E+ + + M + +P T+ ++YGL + R EA ++ M+ + ++P
Sbjct: 286 GRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMIS-WGMRPSFLS 344
Query: 230 FASLIKGLC 238
+ ++ GLC
Sbjct: 345 YKKMVLGLC 353
>gi|295828280|gb|ADG37809.1| AT1G07740-like protein [Capsella grandiflora]
Length = 175
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD V QIL +++ V E +F +I YG+A ++ A+ VF +M+SF+ RT++S N
Sbjct: 2 FDXVDQILRLIRY-RNVRCRESLFXALIQHYGKAGSVDKAVDVFRKMTSFDCVRTIQSLN 60
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TL+N ++ ++++ F + + P++ S NIL+ G + E A KVFDEML+
Sbjct: 61 TLINVLVDNSELEKAKSFFDXAKDMRLRPNSVSXNILIKGFLDKCDWEAACKVFDEMLEM 120
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+QP++VT+ +LI LC + +A L EDM + ++P+A F L+KGLC G
Sbjct: 121 EVQPSVVTYNSLIGFLCRNNDLGKAKSLLEDMFQ-KRIRPNAVTFGLLMKGLCCKG 175
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 6/223 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH----DTRVVPEEIIFCNVISFYGRA 100
K +++ Y +++ +A DE ++LH + +VP+++ F +I+ +A
Sbjct: 245 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKA 304
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
E A +F+EM + N+Q V +F L++ + G+++ D+ +M V P+ +Y
Sbjct: 305 GNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTY 364
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+HG S R+E+A + +EM+ P +T+G+L+Y LC R D+AL+L + ++
Sbjct: 365 NALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE-LK 423
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD + L+ GL G+ A+ EEMV + D+
Sbjct: 424 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 10/221 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y ++I L + DE ++++ ++ + V+P I + + + + + A +
Sbjct: 106 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 165
Query: 109 VFDEM--SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMH 164
+ + S V +F+TL++ + CG+ID +F I YV P+ +YN L++
Sbjct: 166 LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYV-PNVITYNALVN 224
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---VY 221
G + ++E A + + M+ + + P ++T+ L+ C RVDEAL+L M
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284
Query: 222 NV-KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
NV PD F LI G C G A EEMV ++ D
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 325
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 40/196 (20%)
Query: 99 RARLLEHALQVF-DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDA 156
RA AL++F EM+ V T+ ++NT++N + + +LF+ ++E+ PD
Sbjct: 13 RAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDV 72
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ + LE+A ++ +M R P +VT+ LI GLC R+DEA +L ++
Sbjct: 73 VTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQE 132
Query: 217 MMR----------VYN----------------------------VKPDAQVFASLIKGLC 238
M R YN V PD F++LI GLC
Sbjct: 133 MTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC 192
Query: 239 AVGELSLALGFKEEMV 254
G++ A ++M+
Sbjct: 193 KCGQIDEACSVFDDMI 208
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 47/270 (17%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA------- 64
L SL R D AL++F+ + P ++ Y+ II L ++
Sbjct: 8 LQSLCR-AGDTARALEIFRGEMARDG------VAP---TIVTYNTIINGLCKSNDLGAGM 57
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
++F+E+ + H P+ + + +I +A LE A ++ +MSS V +
Sbjct: 58 ELFEELVERGHH--------PDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVT 109
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHG----------CVVSRR 171
++ L+N + G+ID +L Q M + V P+ +YN + G C + R
Sbjct: 110 YSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L D R+ P VTF TLI GLC ++DEA + +DM+ V P+ +
Sbjct: 170 LRDG--------SLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYV-PNVITYN 220
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+L+ GLC ++ A E MV + D
Sbjct: 221 ALVNGLCKADKMERAHAMIESMVDKGVTPD 250
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 97/203 (47%), Gaps = 7/203 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L +A +E ++ LH VP + + +I+ + ++ A ++
Sbjct: 71 DVVTYNTLIDSLCKAGDLEEARR-LHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEAREL 129
Query: 110 FDEMS--SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMH 164
EM+ S +V + ++N+ L+ + +L + + VSPD +++ L+
Sbjct: 130 IQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLID 189
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G ++++A VFD+M+ P ++T+ L+ GLC +++ A + E M+ V
Sbjct: 190 GLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD-KGVT 248
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
PD ++ L+ C + AL
Sbjct: 249 PDVITYSVLVDAFCKASRVDEAL 271
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ L+P +++ + +I L +A + + IL L + V P + + ++ ++
Sbjct: 319 AKNLQP---DVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNALVHGLCKS 374
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDA 156
+E A Q +EM S ++ +L+ A+ + R D Q++ + S PD
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALC---RASRTDDALQLVSELKSFGWDPDT 431
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YNIL+ G S + E A V +EM+ + QP TF G L L +
Sbjct: 432 VTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSG----LHRSGNLAGTME 487
Query: 217 MMRVYNVK---PDAQVFASLIKGLCAVGEL 243
++RV K PDA +S++ +C G+L
Sbjct: 488 LLRVVLAKGMLPDATTCSSILDWVCRSGKL 517
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F++ Y ++I +LGR D VQ IL Q+K D E++ C +I+ Y R E A
Sbjct: 70 FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC-IINGYKRVGSAEQA 128
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
L++F + F + TV+ +N LL+A+L+ K + L+ M+K + P+ +YNIL+
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKA 188
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R++ A K+F EM + P VT+ T++ LC ++D+A +L KP
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAG------RFKP 242
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V+ +LI G+C G + +A+ EM+ N ++
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 103/213 (48%), Gaps = 4/213 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHA 106
R N++ Y ++ L + MFD+ ++ ++ + P + F I G R+ E A
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG-CTPNTMTFNTFIKGLCGNGRV-EWA 473
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
+++ + M + ++N LL+A+ K + LFQ +E + + P+ +YN +++G
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + +A ++F + L R P +T+ T+I+ C + +V A +L E + + P
Sbjct: 534 FSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP 593
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + SLI G C + A+ F ++ + I
Sbjct: 594 DIITYTSLIWGACNWMNIEEAMAFLDKAINQGI 626
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L +A D+ +++ + K P ++ +I + +E A+++ EM
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK------PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V V S++ ++N++ G ++ LF Q+ + + ++ L+ GC + +L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ M++ +P +V + TLI+GLC ++EAL++ + M R P+ ++
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS-GCLPNVTTYSI 389
Query: 233 LIKGLCAVGEL 243
LI G G+L
Sbjct: 390 LIDGFAKSGDL 400
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDAC 157
R +L E AL ++ M + V ++NTL++ + + G ++ + M++ P+
Sbjct: 327 RGKLYE-ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+IL+ G S L A + ++ M+ +P +VT+ ++ LC D+A L E
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEK- 444
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
M + P+ F + IKGLC G + A+ E M
Sbjct: 445 MTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ L R ++E + +++ + P + + V+ + RA ++ ALQ+
Sbjct: 488 NITTYNELLDALFRMNKYEEAFGLFQEIEA-RNLQPNLVTYNTVLYGFSRAGMMGEALQL 546
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
F + ++NT+++A GK+ L + + K PD +Y L+ G
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGAC 606
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+E+A D+ + + + P T+ L+
Sbjct: 607 NWMNIEEAMAFLDKAINQGICPNFATWNALV 637
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 5/172 (2%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
CN ++S +A ++ + QVFD M V V F+T++NA T G++D +LF+ ME
Sbjct: 165 CNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKME 224
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K V+P+ +YN ++HG + RL++A++ ++M K R++P+LVT+G LI GL R D
Sbjct: 225 KVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFD 284
Query: 209 EA-LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
EA LKE R Y P+ V+ +LI G C +G +S AL +++M+ N I
Sbjct: 285 EANCILKEMSDRGY--APNNVVYNTLIDGYCRIGNISTALQIRDDMISNGIS 334
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N + + +I L A +E ++L ++ + +V + I + +I + +E
Sbjct: 436 KGFAANTVTSNALIHGLCEAGSKEEAAKLLKEML-ERGLVLDSISYNTLILACCKEGKVE 494
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILM 163
++ +EM +Q + ++N LL+ + GKI+ L+ +K + PDA +Y I++
Sbjct: 495 EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMI 554
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + R+E+ K+F EM+ +++ V +GTLI C + EA +L++D MR +
Sbjct: 555 DGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDD-MRSRGI 613
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++SLI GL +G + A +EM
Sbjct: 614 PQTSATYSSLIHGLSNIGLVDSANQLLDEM 643
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 2/136 (1%)
Query: 128 LLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L++ + GK +L ++++EK + + + N L+HG + E+A K+ EML+R
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
L +++ TLI C E +V+E KLKE+M+R ++PD + L+ GLC +G++ A
Sbjct: 473 LVLDSISYNTLILACCKEGKVEEGFKLKEEMVR-RGIQPDMYTYNMLLHGLCNMGKIEEA 531
Query: 247 LGFKEEMVRNKIEMDA 262
G E +N DA
Sbjct: 532 GGLWHECKKNGNFPDA 547
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 3/143 (2%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
TV S N L++ + G + L +++E+ + D+ SYN L+ C ++E+ +K+
Sbjct: 442 TVTS-NALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLK 500
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+EM++R +QP + T+ L++GLC +++EA L + + N PDA + +I G C
Sbjct: 501 EEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNF-PDAYTYGIMIDGYCK 559
Query: 240 VGELSLALGFKEEMVRNKIEMDA 262
+ +EMV KIE +A
Sbjct: 560 ANRVEEGEKLFQEMVTMKIEQNA 582
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 39/208 (18%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + +KP +L+ Y ++I L + + FDE IL ++ D P +++ +I Y R
Sbjct: 259 EKERVKP---SLVTYGVLINGLVKLERFDEANCILKEMS-DRGYAPNNVVYNTLIDGYCR 314
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
+ ALQ+ D+M S +SP++ +
Sbjct: 315 IGNISTALQIRDDMIS----------------------------------NGISPNSVTC 340
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ G S ++E A + +EML TF ++I+ LCL+ R D AL +M+
Sbjct: 341 NSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEML- 399
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ N KP+ + L+ GLC G+ S A+
Sbjct: 400 LRNFKPNDGLLTLLVSGLCQNGKQSEAI 427
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 94/209 (44%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I +A +E +++ ++ ++ +++ +I Y + A ++ D+M
Sbjct: 550 YGIMIDGYCKANRVEEGEKLFQEMV-TMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDM 608
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
S + +T ++++L++ + G +D L M K +SP+ Y L+ G ++
Sbjct: 609 RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQM 668
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ EM + P +T+ +I G C + A KL +M + + PDA + +
Sbjct: 669 HKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQ-KGIVPDAVTYNA 727
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L G C G++ AL + M I +D
Sbjct: 728 LTNGFCKEGKMEEALKVCDLMSTGGISLD 756
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 81 TRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+R +P+ + ++I L++ A Q+ DEM + V + L+ G++
Sbjct: 610 SRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMH 669
Query: 140 RMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ + Q M V P+ +Y I+++G ++ A K+ +EM ++ + P VT+ L
Sbjct: 670 KVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALT 729
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
G C E +++EALK+ D+M + D + +LI G
Sbjct: 730 NGFCKEGKMEEALKVC-DLMSTGGISLDDITYTTLIDG 766
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF ++ K + P + N L+ V + ++ +++VFD M + P + F T++
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
C RVD+A++L M +V V P+ + ++I GLC G L A FKE+M + +++
Sbjct: 208 CTGGRVDDAIELFRKMEKV-GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVK 264
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + N+I + L+ A Q ++M V+ ++ ++ L+N ++ + D
Sbjct: 228 VAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEAN 287
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M ++ +P+ YN L+ G + A ++ D+M+ + P VT +LI G
Sbjct: 288 CILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGY 347
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C +++ A L E+M+ V + F S+I LC AL F EM+
Sbjct: 348 CKSNQMEHAEHLLEEMLTGGGV-INQGTFTSVIHRLCLKCRFDSALLFIMEML 399
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 8/214 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F++ Y ++I +LGR D VQ IL Q+K D E++ C +I+ Y R E A
Sbjct: 70 FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFIC-IINGYKRVGSAEQA 128
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
L++F + F + TV+ +N LL+A+L+ K + L+ M+K + P+ +YNIL+
Sbjct: 129 LKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKA 188
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R++ A K+F EM + P VT+ T++ LC ++D+A +L KP
Sbjct: 189 LCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAG------RFKP 242
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V+ +LI G+C G + +A+ EM+ N ++
Sbjct: 243 SVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVD 276
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 103/213 (48%), Gaps = 4/213 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHA 106
R N++ Y ++ L + MFD+ ++ ++ + P I F I G R+ E A
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG-CTPNTITFNTFIKGLCGNGRV-EWA 473
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
+++ + M + ++N LL+A+ K + LFQ +E + + P+ +YN +++G
Sbjct: 474 MKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYG 533
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + +A ++F + L R P +T+ T+I+ C + +V A +L E + + P
Sbjct: 534 FSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHP 593
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + SLI G C + A+ F ++ + I
Sbjct: 594 DIITYTSLIWGACNWMNIEEAMAFLDKAINQGI 626
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L +A D+ +++ + K P ++ +I + +E A+++ EM
Sbjct: 217 YTTMVSSLCKAGKIDDARELAGRFK------PSVPVYNALIDGMCKEGRIEVAIKLLGEM 270
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V V S++ ++N++ G ++ LF Q+ + + ++ L+ GC + +L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ M++ +P +V + TLI+GLC ++EAL++ + M R P+ ++
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRS-GCLPNVTTYSI 389
Query: 233 LIKGLCAVGEL 243
LI G G+L
Sbjct: 390 LIDGFAKSGDL 400
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDAC 157
R +L E AL ++ M + V ++NTL++ + + G ++ + M++ P+
Sbjct: 327 RGKLYE-ALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVT 385
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+IL+ G S L A + ++ M+ +P +VT+ ++ LC D+A L E
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEK- 444
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
M + P+ F + IKGLC G + A+ E M
Sbjct: 445 MTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ L R ++E + +++ + P + + V+ + RA ++ ALQ+
Sbjct: 488 NITTYNELLDALFRMNKYEEAFGLFQEIEA-RNLQPNLVTYNTVLYGFSRAGMMGEALQL 546
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
F + ++NT+++A GK+ L + + K PD +Y L+ G
Sbjct: 547 FGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGAC 606
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+E+A D+ + + + P T+ L+
Sbjct: 607 NWMNIEEAMAFLDKAINQGICPNFATWNALV 637
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 8/221 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQ----LKHDTRVVP-EEIIFCNVISFYGRARL 102
R L+ +D T + KM EVQ++ H L + VP +E +F +I YG+A +
Sbjct: 141 RSGLIRHDRD-THMKMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGI 199
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ ++++F +M V+RT+KS+NTL +L G+ F +++ + V P +YN+
Sbjct: 200 VQESVKIFQKMKDLGVERTIKSYNTLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNL 259
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G +S RLE A + FD+M R + P VT+ T+I G C ++DEA KL + M+
Sbjct: 260 MLWGFFLSLRLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVE-MKGN 318
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
N +P + ++IKG +V + L EEM IE +A
Sbjct: 319 NSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNA 359
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI 161
LE AL+ FD+M + + ++NT++N K+D LF M+ S P +Y
Sbjct: 270 LETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTT 329
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R++D ++F+EM ++P T+ TL+ GLC ++ EA + ++MM +
Sbjct: 330 MIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKH 389
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
D +F L+ G+++ A
Sbjct: 390 IAPKDNSIFLKLLVSQSKAGDMAAA 414
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 103/223 (46%), Gaps = 19/223 (8%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II R K DE +++ ++K + P + + +I Y ++ L++F+EM
Sbjct: 292 YNTIINGYCRFKKMDEAEKLFVEMKGNNSE-PSVVTYTTMIKGYLSVDRVDDGLRIFEEM 350
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
SF ++ +++TLL + GK+ ++ + +M K+++P S I + V +
Sbjct: 351 RSFGIEPNATTYSTLLPGLCDVGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 408
Query: 173 ED---AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR---V 220
D A +V M + +G LI C + A+KL KE ++R
Sbjct: 409 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 468
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRNKIEMDA 262
++P A + +I+ LC G+ + A + F++ M R + DA
Sbjct: 469 LEMEPSA--YNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDA 509
>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 40/260 (15%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + + E +IS YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC 157
+ + +HA +VFDEM +R+V SFN LL A + K D++ F + +S PD
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG----------------- 200
SYNI++ G ++ A + DEM K+ L+P L+TF TL+ G
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRM 226
Query: 201 -------------------LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ E R+ E + L E+ M+ +KPD F +LIKG C G
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEE-MQTKGIKPDGYSFNALIKGFCNDG 285
Query: 242 ELSLALGFKEEMVRNKIEMD 261
++ A + +M N D
Sbjct: 286 KVDEATNWYGKMRENDCSPD 305
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 99/233 (42%), Gaps = 42/233 (18%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L ++ ++ +K FD+V+ +L V P+ + + VI ++ A+ +
Sbjct: 128 SVLSFNALLGACVHSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGM 187
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI------------------------------- 138
DEM +++ + +FNTLLN T G+
Sbjct: 188 LDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVS 247
Query: 139 --DRMTDLFQIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
RM + ++E K + PD S+N L+ G ++++A + +M + P +
Sbjct: 248 SEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWYGKMRENDCSPDKL 307
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVK--PDAQVFASLIKGLCAVGEL 243
TF TL+ C + D+A +L ++ ++N K D + + + GL G++
Sbjct: 308 TFATLVPLYCEKGSFDQAFELCKE---IFNRKCLVDEVLLQNAVDGLVKGGKV 357
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPD 155
R R L+ +Q F + S + RT + + + + + + ++ + +KY +S +
Sbjct: 35 RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94
Query: 156 ACSYNIL-MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ ++ ++G S + A+KVFDEM ++ + ++++F L+ + D+
Sbjct: 95 GFAVRLISLYG--KSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFF 152
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +V+PD + +IKGLC +G + A+G +EM + +E D
Sbjct: 153 SELPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPD 199
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 134/248 (54%), Gaps = 16/248 (6%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L++ + DP+ AL++F N Q + F +N Y I+ KL ++K F + +
Sbjct: 65 NLIKRETDPQRALEIF-------NRVAEQ--RGFSHNNATYATILHKLAKSKKFQAIDAV 115
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAM 132
LHQ+ ++T E IF N++ + + L E +++FD + ++ ++K+ +T LN +
Sbjct: 116 LHQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLL 174
Query: 133 LTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ- 188
+ ++D +T F + K + P+ C +NIL+ + ++ A++V +EM K +
Sbjct: 175 VESNQVD-LTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSY 233
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P L+T+ TLI GLC R+ EA++L E+M+ + PDA + +LI G C ++ AL
Sbjct: 234 PNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALK 293
Query: 249 FKEEMVRN 256
E M +N
Sbjct: 294 IMEFMKKN 301
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 6/219 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ ++ L+P N +++++ + D +++ ++K P I + +I+
Sbjct: 189 NSKKSLNLEP---NTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLING 245
Query: 97 YGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
+ L+ A+++F+EM S + + ++N L+N K+DR + + M+K +P
Sbjct: 246 LCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNP 305
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +Y+ LM+G RLE+A +VFDEM L+P V + TLI C RVDEA++L
Sbjct: 306 NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELL 365
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+D MR + D F ++ GLC G A G E +
Sbjct: 366 KD-MRENKCRADTVTFNVILGGLCREGRFEEARGMLERL 403
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 4/198 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFN 126
D ++ L K + P IF ++ + + ++ A +V +EM +V + +++
Sbjct: 181 DLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYS 240
Query: 127 TLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
TL+N + G++ +LF+ M + + PDA +YN L++G +++ A K+ + M K
Sbjct: 241 TLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKK 300
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
P + + L+ G C E R++EA ++ D M+ +KPD + +LI C G +
Sbjct: 301 NGCNPNVFNYSALMNGFCKEGRLEEAKEVF-DEMKSLGLKPDTVGYTTLINFFCRAGRVD 359
Query: 245 LALGFKEEMVRNKIEMDA 262
A+ ++M NK D
Sbjct: 360 EAMELLKDMRENKCRADT 377
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 12/211 (5%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+ +I + D +I+ +K + P + +++ + + LE A +VFD
Sbjct: 273 LTYNALINGFCHGEKVDRALKIMEFMKKNG-CNPNVFNYSALMNGFCKEGRLEEAKEVFD 331
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
EM S ++ + TL+N G++D +L + M E D ++N+++ G
Sbjct: 332 EMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREG 391
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R E+A + + + + ++ ++ LC E + +A +L +M V P
Sbjct: 392 RFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLV-GLMLGRGVLPHFATS 450
Query: 231 ASLIKGLCAVGELS---------LALGFKEE 252
L+ LC G++ L LGFK E
Sbjct: 451 NELLVHLCEAGKVGDAVMALLGLLELGFKPE 481
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 13/239 (5%)
Query: 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K+ SP R+ L+ Q DP LA ++F + PN F+++ Y ++I KL
Sbjct: 60 TKSPIGSPSRVQKLIASQSDPLLAKEIFDYASRQPN---------FQHSYSSYLILILKL 110
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
GRAK F + +L LK V +F +I+ YG A L + AL++F + F+ +
Sbjct: 111 GRAKYFSFIDDLLTDLKSKNYPV-TPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPS 169
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L +++ I DLF+ Y V P+ SYNIL+ ++ ++ A+ +F
Sbjct: 170 PKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLF 229
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
++M KR + P + ++ L+ LC + +V+ A+ L EDM+ V PDA + +L+ LC
Sbjct: 230 NQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYV-PDALSYTTLLNSLC 287
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
R + A+ + ++M + S+ TLLN++ K+ L M+ K +PD
Sbjct: 253 RKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDII 312
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN ++ G R DA KV ++M P LV++ TL+ GLC + DEA E+M
Sbjct: 313 HYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEM 372
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M + P V +LIKG C VG++ A G EE++++
Sbjct: 373 M-MKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKH 410
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMH 164
A +F++M +V V+S+ L+ A+ +++ DL + ++ K PDA SY L++
Sbjct: 225 AYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLN 284
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++L +A+K+ M + P ++ + T+I G C E R +A K+ ED M
Sbjct: 285 SLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLED-MESNGCM 343
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + +L+ GLC G A EEM+
Sbjct: 344 PNLVSYRTLVGGLCDQGMFDEAKSHLEEMM 373
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + + +++ R + L A ++ M + +NT++ G R D
Sbjct: 273 VPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREG---RAMD 329
Query: 144 LFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++E S P+ SY L+ G ++A +EM+ + P LI
Sbjct: 330 ACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPHFAVSNALIK 389
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
G C +++EA + E++++ + P + + ++ +C V +L
Sbjct: 390 GFCNVGKIEEACGVVEELLK-HGEAPHTETWVMMVSRICEVDDL 432
>gi|147791424|emb|CAN76851.1| hypothetical protein VITISV_005999 [Vitis vinifera]
Length = 383
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 120/260 (46%), Gaps = 40/260 (15%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ L FR Y+ + +L AK F +++IL + K + + E +IS YG+
Sbjct: 48 KSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKK-YKDISREGFAVRLISLYGK 106
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC 157
+ + +HA +VFDEM +R+V SFN LL A + K D++ F + +S PD
Sbjct: 107 SGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLV 166
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL---------------IYG-- 200
SYNI++ G ++ A + DEM K+ L+P L+TF TL I+G
Sbjct: 167 SYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRM 226
Query: 201 -------------------LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ E R+ E + L E+ M+ +KPD F +LIKG C G
Sbjct: 227 EKKNILPDIRSYNAKLVGLVSSEKRMLEGIGLVEE-MQTKGIKPDGYSFNALIKGFCNDG 285
Query: 242 ELSLALGFKEEMVRNKIEMD 261
++ A + +M N D
Sbjct: 286 KVDEATNWYGKMRENDCSPD 305
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L ++ ++ +K FD+V+ +L V P+ + + VI ++ A+ +
Sbjct: 128 SVLSFNXLLGACVXSKKFDKVEGFFSELPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGM 187
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM +++ + +FNTLLN T G+ ++ MEK + PD SYN + G V
Sbjct: 188 LDEMEKKSLEPDLITFNTLLNRXYTSGRFLDGEKIWGRMEKKNILPDIRSYNAKLVGLVS 247
Query: 169 S-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +R+ + + +EM + ++P +F LI G C + +VDEA MR + PD
Sbjct: 248 SEKRMLEGIGLVEEMQTKGIKPDGYSFNALIKGFCNDGKVDEATNWY-GKMRENDCSPDK 306
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
FA+L+ C G A +E+ K +D
Sbjct: 307 LTFATLVPLYCEKGSFDQAFELCKEIFNRKCLVD 340
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPD 155
R R L+ +Q F + S + RT + + + + + + ++ + +KY +S +
Sbjct: 35 RERNLKRLVQKFKKSSELDRFRTKTGIYEETVRRLASAKRFRWIEEILEEQKKYKDISRE 94
Query: 156 ACSYNIL-MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ ++ ++G S + A+KVFDEM ++ + ++++F L+ + D+
Sbjct: 95 GFAVRLISLYG--KSGMFDHAFKVFDEMPDQKCERSVLSFNXLLGACVXSKKFDKVEGFF 152
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +V+PD + +IKGLC +G + A+G +EM + +E D
Sbjct: 153 SELPSKLSVEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPD 199
>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 119/254 (46%), Gaps = 20/254 (7%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
FR SL RL ++ FK + N FR Y I +L AK F
Sbjct: 34 FRERSLKRL-------VEKFKKASENER---------FRTKSAIYKDTIRRLAAAKKFRY 77
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
V++IL K + + +E +IS YG + + ++A +VFDEM RTV SFN LL
Sbjct: 78 VEEILENQKQ-YQDMSKEGFNARLISLYGSSGMFDNARKVFDEMLERKCARTVLSFNALL 136
Query: 130 NAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
A + K D + LF+ + E + PD SYN +M L+ A + DE+ K+ L
Sbjct: 137 GACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGL 196
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+P L+TF TL+ GL R D ++ + M+ NVKPD + + + GL + A
Sbjct: 197 KPDLITFNTLLNGLYANGRFDAGERIWQ-RMKEKNVKPDGRSYNEKLLGLALEKRMKDAT 255
Query: 248 GFKEEMVRNKIEMD 261
EEM IE D
Sbjct: 256 KVVEEMKSEGIEFD 269
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+L ++ ++ +K FDEV + L + + P+ + + V+ + L+ A+ +
Sbjct: 129 VLSFNALLGACVNSKKFDEVGGLFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLL 188
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
DE+ ++ + +FNTLLN + G+ D ++Q M EK V PD SYN + G +
Sbjct: 189 DEIEKKGLKPDLITFNTLLNGLYANGRFDAGERIWQRMKEKNVKPDGRSYNEKLLGLALE 248
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+R++DA KV +EM ++ + ++ LI G E ++EA K +R ++KPD
Sbjct: 249 KRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVNEGDLEEA-KGWYGEIRKSDIKPDKLT 307
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
F +LI + G+++ A ++ + +K+
Sbjct: 308 FKTLIPFVVEKGDVAFAFDLCKDALSSKL 336
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 8/217 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F N L Y+L + K ++E +++L VP+E+ + V++ Y + E A
Sbjct: 457 FTLNTLLYNLC-----KEKRYEEAEELLRSPPQRG-FVPDEVSYGTVMAAYFKENKPEPA 510
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
L ++DEMS + ++ ++NTL+ + T GK+ D L ++M+K + PD +YNI++H
Sbjct: 511 LYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHA 570
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
LE A++ ++ML+ +P +VT TL+ GLCL ++++A+KL E K
Sbjct: 571 YCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAE-KGKKV 629
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + +LI+ LC G++ AL F +M ++ DA
Sbjct: 630 DVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDA 666
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ R M E + +L ++K + + P + ++S Y R ++ A V
Sbjct: 244 DVVTYNTLLKAHCRKGMLGEARTLLARMKKEG-IAPTRATYNTLVSAYARLGWIKQATNV 302
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
+ M++F + + ++N L + GK+D L ME VSPD +YN L+ C
Sbjct: 303 VEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACF 362
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDMMRVYNVKPD 226
+R DA + +EM + ++ +LVT ++ GLC E +++EAL +LK MM + PD
Sbjct: 363 KYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLK--MMTEEGLAPD 420
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI C ++ A +EMVR+ ++MD
Sbjct: 421 VITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMD 455
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 118/260 (45%), Gaps = 35/260 (13%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N EA F +L Y+++ L +A DE ++ +++H + V P+ + + ++
Sbjct: 301 NVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDA 360
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ + AL + +EM V+ ++ + N ++ + G+++ ++M E+ ++PD
Sbjct: 361 CFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPD 420
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-- 213
+YN L+ +R + A+ + DEM++ L+ T TL+Y LC E R +EA +L
Sbjct: 421 VITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLR 480
Query: 214 ----------------------KE----------DMMRVYNVKPDAQVFASLIKGLCAVG 241
KE D M + P + +LIKGLC +G
Sbjct: 481 SPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIG 540
Query: 242 ELSLALGFKEEMVRNKIEMD 261
+L+ A+ E+++ + D
Sbjct: 541 KLTEAIDKLNELMKKGLVPD 560
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 75/173 (43%), Gaps = 1/173 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F ++ + L AL M F + V ++NTLL A G +
Sbjct: 205 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEA 264
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L M+K ++P +YN L+ ++ A V + M +P L T+ L G
Sbjct: 265 RTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAG 324
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC +VDEA KLK++M + V PD + +L+ S AL EEM
Sbjct: 325 LCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEM 377
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 51/278 (18%)
Query: 29 FKNPNPNP-----NNTEAQPLKP--FRYNLLHYDL-IITKLGRAKMFDEVQQILHQLKHD 80
FK P P + + L P + YN L L I KL A D++ +++ +
Sbjct: 502 FKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEA--IDKLNELMKK---- 555
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+VP++ + +I Y + LE A Q ++M + V + NTL+N + GK+++
Sbjct: 556 -GLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEK 614
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
LF+ EK D +YN L+ ++ A F +M R LQP T+ ++
Sbjct: 615 AIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLS 674
Query: 200 GLCLELRVDEAL----------------------------------KLKEDMMRVYNVKP 225
L R +EA ++K D N K
Sbjct: 675 ALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKG 734
Query: 226 -DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + + +K LC G+L A +EM++ + +D+
Sbjct: 735 GDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDS 772
>gi|449503427|ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ K F++ Y+L+I LG+ K F+ + ++ +K + E F + Y RA
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRE--TFALITRRYARA 203
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSY 159
R ++ A++ F++M F Q V FN LL+ + + + ++F M+ PD SY
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL+ G + L +V+ EM +P +VTFG LI C + DEA++L + M
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHE-ME 322
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
N+KP VF +LI GL + L AL F E++
Sbjct: 323 AKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQL 356
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 116/245 (47%), Gaps = 39/245 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y +++ G+ + ++ ++ +++ D P+ + F +I+ + +AR + A
Sbjct: 256 FKPDIKSYTILLEGWGQDQNLLKLNEVYREMR-DEGFEPDVVTFGILINAHCKARKYDEA 314
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN----- 160
+++F EM + N++ + F TL+N + + ++ + F Q+ +P+A +YN
Sbjct: 315 IRLFHEMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGA 374
Query: 161 ------------------------------ILMHGCVVSRRLEDAWKVFDEMLKR-RLQP 189
I++H + R+ ++A+ VF M + +P
Sbjct: 375 YCWSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEP 434
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
TL T+ +I C E RVD A+++ D M+ V P +F++LI LC +L A +
Sbjct: 435 TLSTYDIMIRMFCNEERVDMAIQI-WDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTY 493
Query: 250 KEEMV 254
+EM+
Sbjct: 494 FQEML 498
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 115/248 (46%), Gaps = 43/248 (17%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ + ++I +A+ +DE ++ H+++ + P +FC +I+ G + L+ A
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN-IKPSPHVFCTLINGLGSEKRLKEA 349
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILM 163
L+ F+++ ++N ++ A K+ RM D ++ + V P++ +Y+I++
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVD--EMRKSGVGPNSRTYDIIL 407
Query: 164 HGCVVSRRLEDAWKVF------------------------------------DEMLKRRL 187
H + R+ ++A+ VF DEM + +
Sbjct: 408 HHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQIWDEMKAKGV 467
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P + F TLI LC E ++++A ++M+ V ++P A +F++L + L G AL
Sbjct: 468 LPGMHLFSTLINSLCHEHKLEDACTYFQEMLDV-GIRPPATMFSNLKQALLDDGRKDTAL 526
Query: 248 GFKEEMVR 255
E++ +
Sbjct: 527 LMAEKIXK 534
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 41/218 (18%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ +KP + +I LG K E + QLK + PE + V+ Y
Sbjct: 322 EAKNIKPSPHVFC---TLINGLGSEKRLKEALEFFEQLKL-SGFAPEAPTYNAVVGAYCW 377
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDAC 157
+ + +A ++ DEM V ++++ +L+ ++ K +FQ M E P
Sbjct: 378 SMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLS 437
Query: 158 SYNI-----------------------------------LMHGCVVSRRLEDAWKVFDEM 182
+Y+I L++ +LEDA F EM
Sbjct: 438 TYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEM 497
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L ++P F L L + R D AL + E + ++
Sbjct: 498 LDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIXKL 535
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 111/196 (56%), Gaps = 3/196 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 283 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 341
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A +V+DEM ++ + S N L+ T G++D +F+ M +K + D +YNIL
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + RL +A +V++++L L+P++ TF LI +C E +VD A++L + +M
Sbjct: 402 IQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLK-VMHAKG 460
Query: 223 VKPDAQVFASLIKGLC 238
++P A++ S+I G C
Sbjct: 461 LEPLARINDSIINGFC 476
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 3/204 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ A F +V + LH L VP+ +I+ +I ++ AL+VF+E+
Sbjct: 226 LVAAFSAAANFGKVSETLH-LMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFNEIKLR 284
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ T ++ + G ID ++ ++++K + P+ +Y L+ + E A
Sbjct: 285 GYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMA 344
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
KV+DEML + L+ + V+ L+ G C RVDEAL + E+M++ ++ D + LI+
Sbjct: 345 RKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVK-KGIEHDVITYNILIQ 403
Query: 236 GLCAVGELSLALGFKEEMVRNKIE 259
GLC G LS A+ E+++ + +E
Sbjct: 404 GLCKAGRLSEAIQVYEQLLSSGLE 427
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
MF+E+ + ++HD I + +I +A L A+QV++++ S ++ +V +F
Sbjct: 382 MFEEM--VKKGIEHDV------ITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTF 433
Query: 126 NTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
L++ M G++D +L ++M K + P A + +++G +RR ED MLK
Sbjct: 434 TPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLK 493
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ L+P TF +L+ L RVD+AL + M ++ + + + L++ LC G+L
Sbjct: 494 KNLKPREHTFNSLVELLSSSGRVDDALLVLNTMFKIGH-ELGSLACTMLVEQLC-TGKLC 551
Query: 245 LALGFKEEMVRNK 257
+ + +V NK
Sbjct: 552 YSHELENILVANK 564
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
V D +++F+ + L+ M+ G + PD Y ++HG
Sbjct: 223 VADLVAAFSAAANFGKVSETLHLMIAAGSV---------------PDTVIYQRIIHGLFA 267
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A +VF+E+ R VT+ T I GLC +DEA ++ +M+ ++P+
Sbjct: 268 HKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVD-KGMEPNEY 326
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ SL+ C G+ +A +EM+
Sbjct: 327 AYCSLVAYYCKAGDFEMARKVYDEML 352
>gi|449465535|ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ K F++ Y+L+I LG+ K F+ + ++ +K + E F + Y RA
Sbjct: 146 AEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRE--TFALITRRYARA 203
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSY 159
R ++ A++ F++M F Q V FN LL+ + + + ++F M+ PD SY
Sbjct: 204 RKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHGRFKPDIKSY 263
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL+ G + L +V+ EM +P +VTFG LI C + DEA++L + M
Sbjct: 264 TILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRLFHE-ME 322
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
N+KP VF +LI GL + L AL F E++
Sbjct: 323 AKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQL 356
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 113/212 (53%), Gaps = 8/212 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ + ++I +A+ +DE ++ H+++ + P +FC +I+ G + L+ A
Sbjct: 291 FEPDVVTFGILINAHCKARKYDEAIRLFHEMEAKN-IKPSPHVFCTLINGLGSEKRLKEA 349
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILM 163
L+ F+++ ++N ++ A K+ RM D ++ + V P++ +Y+I++
Sbjct: 350 LEFFEQLKLSGFAPEAPTYNAVVGAYCWSMKMAYAYRMVD--EMRKSGVGPNSRTYDIIL 407
Query: 164 HGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
H + R+ ++A+ VF M + +PTL T+ +I C E RVD A+++ D M+
Sbjct: 408 HHLIKGRKSKEAYSVFQRMSREPGCEPTLSTYDIMIRMFCNEERVDMAIQI-WDEMKAKG 466
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +F++LI LC +L A + +EM+
Sbjct: 467 VLPGMHLFSTLINSLCHEHKLEDACTYFQEML 498
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 82/218 (37%), Gaps = 41/218 (18%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ +KP + +I LG K E + QLK + PE + V+ Y
Sbjct: 322 EAKNIKPSPHVFC---TLINGLGSEKRLKEALEFFEQLKL-SGFAPEAPTYNAVVGAYCW 377
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDAC 157
+ + +A ++ DEM V ++++ +L+ ++ K +FQ M E P
Sbjct: 378 SMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTLS 437
Query: 158 SYNI-----------------------------------LMHGCVVSRRLEDAWKVFDEM 182
+Y+I L++ +LEDA F EM
Sbjct: 438 TYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQEM 497
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L ++P F L L + R D AL + E + ++
Sbjct: 498 LDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKL 535
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + NL+ Y++II L R E +IL ++ + P+E+ + +++ Y +
Sbjct: 74 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 132
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL + EM V +V ++ L+N+M ++R + F M + + P+ +Y L+
Sbjct: 133 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 192
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L +A+++ +EM + P++VT+ I+G C+ R++EAL + ++M+ +
Sbjct: 193 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGL 251
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD ++++I G C GEL A K+EMV + DA
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 290
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ R N Y +I R + +E +IL+++ ++ P + + I + +
Sbjct: 178 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMT-ESGFSPSVVTYNAFIHGHCVLERM 236
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E AL V EM + V S++T+++ G++DR + Q M EK VSPDA +Y+ L
Sbjct: 237 EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL 296
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G RRL +A + EML L P T+ TLI C+E +++AL L ++M+
Sbjct: 297 IQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH-KG 355
Query: 223 VKPDAQVFASLIKGL 237
PDA ++ LI GL
Sbjct: 356 FLPDAVTYSVLINGL 370
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+RV P + +I + L+ L F EM V ++NTL++A G+ID
Sbjct: 4 SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDE 63
Query: 141 MTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L + M K + P+ SYN++++G +++AW++ +EM + P VT+ TL+
Sbjct: 64 AFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLN 123
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G C E +AL + +M+R V P + +LI +C L+ A+ F ++M
Sbjct: 124 GYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II+ R D Q+ ++ + V P+ + + ++I R L A +
Sbjct: 254 DVVSYSTIISGFCRKGELDRAFQMKQEMV-EKGVSPDAVTYSSLIQGLCEMRRLTEACDL 312
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + ++ TL+NA G +++ L +++ K PDA +Y++L++G
Sbjct: 313 SQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK 372
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------GLCLELRVDEALKL 213
R +A ++ +++ P+ VT+ TLI G C++ + EA ++
Sbjct: 373 QARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRV 432
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E M+ N KP V+ +I G C G L A +EM+ +
Sbjct: 433 FESMVE-RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 474
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y ++I L + E +++L +L ++ VP ++ + +I
Sbjct: 354 KGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYE-ESVPSDVTYDTLIE--------- 403
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
+ N++ KS L+ G + +F+ M E+ P YN+++
Sbjct: 404 ---------NCSNIE--FKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII 452
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
HG L A+ ++ EM+ P VT TLI L E +E ++ D +R
Sbjct: 453 HGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLR 508
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 11/250 (4%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+ L++ +KD A+ +F + N FR++ + LII++L F +
Sbjct: 18 VVQLIKAEKDVHKAVNMFDSATAEYGNG-------FRHDHETFGLIISRLVTVNQFRPAE 70
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+L ++K + +V E+I F ++ YGR A++VF +M F ++ T K++ T+L+
Sbjct: 71 GMLERMKQEKCMVTEDI-FLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQKAYLTILDI 129
Query: 132 MLTCGKIDRMTDLFQIMEKYVSPDA-CSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQP 189
++ + R ++ M + P + S NIL+ C ++ A ++F EM R QP
Sbjct: 130 LVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQP 189
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
T+GTLI GLC + EA +L ++M + + SLI GLC L A+G
Sbjct: 190 DSYTYGTLINGLCRLGNISEAKELFKEMEQ-KGFSASVVTYTSLIHGLCQSNNLDEAIGL 248
Query: 250 KEEMVRNKIE 259
EEM RN IE
Sbjct: 249 LEEMKRNDIE 258
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 39/213 (18%)
Query: 84 VPEEIIFCNVI--SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+P ++ N++ + ++ AL++F EM + Q ++ TL+N + G I
Sbjct: 151 IPSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEA 210
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT---------- 190
+LF+ ME K S +Y L+HG S L++A + +EM + ++P
Sbjct: 211 KELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDG 270
Query: 191 -------------------------LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+VT+ TLI GLC E ++ EA+++ D MR+ +KP
Sbjct: 271 LCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEIL-DRMRIQGLKP 329
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+A ++ +I GLCA G A F +EMV I
Sbjct: 330 NAGLYGKIISGLCAAGSYQEAANFIDEMVLGGI 362
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R E +++ +++ + + ++I ++ L+ A+ + +EM
Sbjct: 194 YGTLINGLCRLGNISEAKELFKEMEQKG-FSASVVTYTSLIHGLCQSNNLDEAIGLLEEM 252
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
+++ V ++++L++ + G + L ++M+K + P+ +Y+ L++G R+L
Sbjct: 253 KRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKL 312
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA- 231
+A ++ D M + L+P +G +I GLC EA ++M+ + + P+ ++
Sbjct: 313 REAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMV-LGGISPNRASWSL 371
Query: 232 ------SLIKGLC 238
+++GLC
Sbjct: 372 HVRMHNMVVQGLC 384
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 12/233 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q DP LA ++F + PN FR+N Y ++I K GR+K F
Sbjct: 41 SPTRVQKLIASQSDPLLAKEIFDYASLQPN---------FRHNYSTYLILILKFGRSKHF 91
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ +L +LK ++ +F +I YG A L + AL F M FN++ K N
Sbjct: 92 SLLDDLLRRLKSESSQPITPTLFSYLIKIYGEANLPDKALNTFYIMLQFNIKPLTKHLNR 151
Query: 128 LLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L+ +++ R DLF+ K+ V PD SYNILM ++ + A+ +F++M KR
Sbjct: 152 ILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKR 211
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ P + ++ L+ LC + +V+ A+ L EDM+ V PD+ + +L+ LC
Sbjct: 212 DVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFV-PDSFTYTTLLNSLC 263
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMH 164
A +F++M +V ++S+ L+ A+ +++ DLF+ ++ K PD+ +Y L++
Sbjct: 201 AYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLN 260
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++L +A+K+ M + P +V + T+I G C E R +A K+ +DM +
Sbjct: 261 SLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDM-QANGCL 319
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + +L+ GLC +G L A + EEM+
Sbjct: 320 PNLVSYRTLVNGLCHLGMLDEATKYVEEML 349
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
R + A+ +F++M + ++ TLLN++ K+ L M+ K +PD
Sbjct: 229 RKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV 288
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN ++ G R DA KV D+M P LV++ TL+ GLC +DEA K E+M
Sbjct: 289 HYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEM 348
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
+ P V +L+KG C VG + A G
Sbjct: 349 LS-KGFSPHFAVIHALVKGFCNVGRIEEACG 378
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 12/226 (5%)
Query: 27 QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86
Q+FK+P+ NT + ++ L + +I + F ++Q+LHQ+K + RV E
Sbjct: 45 QIFKSPS----NTSSHKWGSYKLGDLSFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIE 100
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ F + YG+A L + AL +F M + F+ ++TVKSFNT+LN ++ G D + +
Sbjct: 101 KS-FIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFY 159
Query: 146 -QIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+++ + P+ S+N+++ ++ A +VF M R T+ TL++G
Sbjct: 160 NHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHG 219
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LC E R+DEA+ L D M+V P+ F LI LC G+LS A
Sbjct: 220 LCNEGRIDEAVSLL-DEMQVEGTFPNPVAFNVLISALCKKGDLSRA 264
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 6/176 (3%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMT 142
VP E+ + +++ L+ A+ + + M + +F TL++ + G+ +D +
Sbjct: 277 VPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 336
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + EK + SY+ L+ G + E +++ EM+++ +P + + LI GLC
Sbjct: 337 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLC 396
Query: 203 LELRVDEALKLKEDMMRVYNV--KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E + DEA KE ++ + N P++ ++SL+ G G++ A+ +EM N
Sbjct: 397 REGKPDEA---KEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN 449
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 5/220 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K +R N Y +I+ L + + Q+ ++ + P I++ +I R +
Sbjct: 344 KGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMV-EKGCKPNTIVYSALIDGLCREGKPD 402
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + EM + ++++L+ G I + +++ M + + Y+IL+
Sbjct: 403 EAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILI 462
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G + +L++A V+ +ML R ++ +V + ++I+G C V++ +KL M+ +N
Sbjct: 463 NGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQML-CHNP 521
Query: 224 K--PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K PD + L+ C +S A+ M+ + D
Sbjct: 522 KLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPD 561
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 113/219 (51%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + NL+ Y++II L R E +IL ++ + P+E+ + +++ Y +
Sbjct: 278 KGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG-FTPDEVTYNTLLNGYCKEGNFH 336
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL + EM V +V ++ L+N+M ++R + F M + + P+ +Y L+
Sbjct: 337 QALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLI 396
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L +A+++ +EM + P++VT+ I+G C+ R++EAL + ++M+ +
Sbjct: 397 DGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE-KGL 455
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD ++++I G C GEL A K+EMV + DA
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 494
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ R N Y +I R + +E +IL+++ ++ P + + I + +
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMT-ESGFSPSVVTYNAFIHGHCVLERM 440
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E AL V EM + V S++T+++ G++DR + Q M EK VSPDA +Y+ L
Sbjct: 441 EEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSL 500
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G RRL +A + EML L P T+ TLI C+E +++AL L ++M+
Sbjct: 501 IQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH-KG 559
Query: 223 VKPDAQVFASLIKGL 237
PDA ++ LI GL
Sbjct: 560 FLPDAVTYSVLINGL 574
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 5/200 (2%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
D I+ G K+ +++ ++ +RV P + +I + L+ L F EM
Sbjct: 185 DAIVRSRGSVKL--SAEEVYREMIR-SRVSPNVYTYNILIRGFCSVGELQKGLGCFGEME 241
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
V ++NTL++A G+ID L + M K + P+ SYN++++G ++
Sbjct: 242 RNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMK 301
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+AW++ +EM + P VT+ TL+ G C E +AL + +M+R V P + +L
Sbjct: 302 EAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR-NGVSPSVVTYTAL 360
Query: 234 IKGLCAVGELSLALGFKEEM 253
I +C L+ A+ F ++M
Sbjct: 361 INSMCKARNLNRAMEFFDQM 380
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y ++I L + E +++L +L ++ VP ++ + +I
Sbjct: 558 KGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYE-ESVPSDVTYDTLIE--------- 607
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
+ N++ KS L+ G + +F+ M E+ P YN+++
Sbjct: 608 ---------NCSNIE--FKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVII 656
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
HG L A+ ++ EM+ P VT TLI L E +E ++ D +R
Sbjct: 657 HGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLR 712
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 115/214 (53%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ II L ++ E QI Q+ ++ +VP+++ F +I+ +A E A +
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQV-YNRMLVPDKVTFNILIAGACKAGNFEQASAL 385
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F+EM + N+Q V +F L++ + G+++ D+ +M V P+ +YN+L+HG
Sbjct: 386 FEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCK 445
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S R+E+ + +EM+ P +T+G+L+Y LC R D+AL+L ++ + PD
Sbjct: 446 SGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSK-LKSFGWDPDTV 504
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ L+ GL G+ A+ EEMV + D+
Sbjct: 505 TYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 538
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 9/216 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y+ + L + M E +++ L+ + RV P+ + F +I + + A
Sbjct: 187 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 246
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
D+M + V ++N L+N + K++R + + M +K V+PD +Y++L+
Sbjct: 247 --DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 304
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN--VKP 225
+ R+++A ++ M R P +VTF ++I GLC R EA ++ ++VYN + P
Sbjct: 305 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIA---LQVYNRMLVP 361
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D F LI G C G A EEMV ++ D
Sbjct: 362 DKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPD 397
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 95/192 (49%), Gaps = 5/192 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y ++I L + DE ++++ ++ + V+P I + + + + + A +
Sbjct: 150 NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACE 209
Query: 109 VFDEM--SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
+ + S V +F+TL++ + CG+ D + I YV P+ +YN L++G
Sbjct: 210 LMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYV-PNVVTYNALVNGL 268
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++E A + + M+ + + P ++T+ L+ C RVDEAL+L M P+
Sbjct: 269 CKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTPN 327
Query: 227 AQVFASLIKGLC 238
F S+I GLC
Sbjct: 328 VVTFNSIIDGLC 339
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 3/143 (2%)
Query: 99 RARLLEHALQVF-DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDA 156
RA AL++F EM+ V T+ ++NT++N + ++ +LF+ ++++ PD
Sbjct: 57 RAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDV 116
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ + LE+A ++ M R P +VT+ LI GLC R+DEA +L ++
Sbjct: 117 VTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQE 176
Query: 217 MMR-VYNVKPDAQVFASLIKGLC 238
M R +V P+ + S + GLC
Sbjct: 177 MTRKSCDVLPNIITYNSFLDGLC 199
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 38 NTEAQPLKPFRY--------NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
NT+ L P ++ ++ Y++++ L RA +I V P +
Sbjct: 24 NTQRVNLCPLKFFFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVT 83
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM- 148
+ +I+ ++ L +++F+E+ V ++NTL++++ G ++ L M
Sbjct: 84 YNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMS 143
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELR 206
+ P+ +Y++L++G R+++A ++ EM ++ P ++T+ + + GLC +
Sbjct: 144 SRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSM 203
Query: 207 VDEALK----LKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
EA + L++ +R V PD F++LI GLC G+
Sbjct: 204 TAEACELMRSLRDGSLR---VSPDTVTFSTLIDGLCKCGQ 240
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 9/216 (4%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ II L ++ ++ +L P+ + + +I +A LE A ++
Sbjct: 81 IVTYNTIINGLCKSNELGAGMELFEELVKRGHH-PDVVTYNTLIDSLCKAGDLEEARRLH 139
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCV 167
MSS V +++ L+N + G+ID +L Q M + V P+ +YN + G
Sbjct: 140 GGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLC 199
Query: 168 VSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+A ++ + R+ P VTF TLI GLC + DEA D M P
Sbjct: 200 KQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN---DDMIAGGYVP 256
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +L+ GLC ++ A E MV + D
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPD 292
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 44/220 (20%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I +A F++ + ++ + P+ + F +I +A +E A + D M
Sbjct: 366 FNILIAGACKAGNFEQASALFEEMVAK-NMQPDVMTFGALIDGLCKAGQVEAARDILDLM 424
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKID--------------------------------RM 141
+ V V ++N L++ + G+I+ R
Sbjct: 425 GNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRT 484
Query: 142 TDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D Q++ K S PD +YNIL+ G S + E A V +EM+ + QP TF
Sbjct: 485 DDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 544
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVK---PDAQVFASLI 234
G L L +++RV K PDA +S++
Sbjct: 545 FGG----LHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 580
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 129/253 (50%), Gaps = 12/253 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL +++R Q++ LALQ+F + + F +N Y II +L RA+ F+
Sbjct: 52 PNRLVAMIRRQQNLDLALQIF--------HYAGKYHPAFTHNYDTYHAIIYRLSRARAFE 103
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V+ +L +L+ D+ + E +F VI YG A + AL+ F + +F V+R+V+S NTL
Sbjct: 104 PVESLLLELQ-DSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTL 162
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LNA++ + + LF+ + V P+ + NIL+ +E A KVFDEM
Sbjct: 163 LNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMG 222
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P +VT+ T++ G + A ++ ++ + PDA + L+ G G + A
Sbjct: 223 IVPNVVTYTTILGGYVSRGDMIGAKRVFGELFD-HGWLPDATTYTILMDGYVKQGRFTDA 281
Query: 247 LGFKEEMVRNKIE 259
+ +EM N +E
Sbjct: 282 VKVMDEMEENGVE 294
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 4/197 (2%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
F V + K VVP + CN+ I + +E A +VFDEM S + V ++
Sbjct: 172 FSSVHLLFKYSKSKFGVVPN-VFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTY 230
Query: 126 NTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
T+L ++ G + +F ++ + PDA +Y ILM G V R DA KV DEM +
Sbjct: 231 TTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEE 290
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P +T+G +I G C E + EAL L DM+ + P++ + +I LC G +
Sbjct: 291 NGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYI-PNSALCCKVIDVLCGEGRVK 349
Query: 245 LALGFKEEMVRNKIEMD 261
A E++++ D
Sbjct: 350 EACKMWEKLLKKNCTPD 366
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 11/206 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS-FYGRARLLEHALQ 108
N + Y +II + + E +L+ + + + +P + C VI G R+ E A +
Sbjct: 296 NDITYGVIILGYCKERKSGEALNLLNDML-EKKYIPNSALCCKVIDVLCGEGRVKE-ACK 353
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+++++ N +TL++ + G I LF E+ +YN L+ G
Sbjct: 354 MWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCE 413
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A +++D+ML++ P T+ LI G + E +K+ E+M+ +
Sbjct: 414 MGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLD-KGCLLNES 472
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ L++GL L LG +EE++
Sbjct: 473 TYLILVEGL-------LKLGKREELL 491
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 141/292 (48%), Gaps = 46/292 (15%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
AK +P + L++ ++D K AL +F ++ A+ F+++L + L+I+KL
Sbjct: 39 AKTVTPTHVQQLIQAERDIKKALIIF-------DSATAEYANGFKHDLNTFSLMISKLIS 91
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F + +L ++K + V E+I+ ++ YGR +++VF +M F+ + T K
Sbjct: 92 ANQFRLAETLLDRMKEEKIDVTEDILL-SICRAYGRIHKPLDSIRVFHKMQDFHCKPTEK 150
Query: 124 SF-----------------------------------NTLLNAML-TCGKIDRMTDLFQI 147
S+ N L+ A G +D+ LF+
Sbjct: 151 SYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRT 210
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M + PD+ +Y L++G R + +A ++ EM + P++VT+ ++I+GLC
Sbjct: 211 MSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNN 270
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
VDEA++L ED M+ N++P+ ++SL+ G C G S A E M++ ++
Sbjct: 271 VDEAMRLLED-MKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRL 321
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I+ R R + A ++ EM + +V ++ ++++ + +D L
Sbjct: 218 PDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRL 277
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M +K + P+ +Y+ LM G + A + + M+++RL+P ++++ TL+ GLC
Sbjct: 278 LEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCN 337
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E +++EAL++ D M++ KPDA ++ ++ LC V A F +EMV
Sbjct: 338 EGKINEALEI-FDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMV 387
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + DE ++L +K D + P + +++ + + A +
Sbjct: 254 SVVTYTSIIHGLCQLNNVDEAMRLLEDMK-DKNIEPNVFTYSSLMDGFCKTGHSSRARDI 312
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+ M ++ + S++TLLN + GKI+ ++F M+ + PDA Y +++
Sbjct: 313 LELMIQKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCD 372
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFG-------TLIYGLCLELRVDEALKLKEDMMRVY 221
R ++A DEM+ ++P +T+ +I+GLC + A +L ++
Sbjct: 373 VSRFQEAANFLDEMVLCGIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVL-TR 431
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ F SL+K C +L +EMV N
Sbjct: 432 GISITVDTFNSLLKCFCNKKDLPKTSRILDEMVIN 466
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 125/239 (52%), Gaps = 14/239 (5%)
Query: 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
N ++ +P R+ L+ Q D LA+++F+ + P F+++ Y +I KL
Sbjct: 93 NHSRMLTPARVHKLIASQTDALLAMEIFEVASRQPG---------FKHSYSTYHTLICKL 143
Query: 62 GRAKMFDEVQQILHQLKHD-TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
GRA+ F ++ ++ Q++ D P +F ++I YG + A++ F +M F +
Sbjct: 144 GRARQFKTMEGLIQQMRKDGCPYTPG--LFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEP 201
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K FN LL ++ ++ LF+ + ++ +SP+ +YNIL+ S +L A+ +F
Sbjct: 202 LAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLF 261
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
++M K+ P + T+ L+ GLC + +V AL + ++M+ V PDA + +L+ LC
Sbjct: 262 NKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYV-PDALTYNTLLNSLC 319
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 8/172 (4%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H +P+ + ++ R ++ AL V DEM + ++NTLLN++ C K+
Sbjct: 265 HKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSL--CRKM 322
Query: 139 DRMTDLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ + + ++++ K +PD +YN ++ G R DA ++ +M + P +++
Sbjct: 323 N-LREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSY 381
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
TL+ GLC E + DEA E+M+ P ++ LI GLC G++ A
Sbjct: 382 RTLVNGLCNEGKFDEAKDFVEEMIS-NGFIPHISIYHLLITGLCNEGKVGEA 432
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 3/186 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L R +L ++ + VP+ + + +++ R L A ++ +M
Sbjct: 276 YSILMQGLCRKSQVKTALGVLDEML-NKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKM 334
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
V ++NT++ G+ +D L + E P+A SY L++G +
Sbjct: 335 KVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKF 394
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A +EM+ P + + LI GLC E +V EA ++ MM + P ++
Sbjct: 395 DEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLV-MMTKQTLAPHESTWSV 453
Query: 233 LIKGLC 238
L+ +C
Sbjct: 454 LLMRIC 459
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 115/213 (53%), Gaps = 9/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I R D + L +++ + ++P+ +I+ VI + RA L+ AL+V
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMR-EFGLMPDGVIYTMVIGGFCRAGLMLEALRV 356
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHG 165
DEM +F V ++NTLLN + K R++D L ++ E+ V PD C++ L+HG
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLC---KERRLSDAEELLNEMKERGVPPDLCTFTTLIHG 413
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+E A + FD + +RL+P +VT+ TLI G+C + + +A +L +D M + P
Sbjct: 414 YCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDD-MHSREIFP 472
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ LI C G++ A F +EMV I
Sbjct: 473 NHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGI 505
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 111/208 (53%), Gaps = 7/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N ++++ + F EV ++ ++ + R V +++ NV + RA +E A+
Sbjct: 158 NTYTLNIMVHSYCKTLQFGEVDTVISEM--EKRCVFPDVVTHNVMVDARFRAGDVEAAMA 215
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
+ D M S ++ + ++N++L +L G+ D+ ++F+ M+ V+PD S+N+L+ G
Sbjct: 216 LIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFC 275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPD 226
+ LE+A + + EM RR+ P +V+F LI +D A + L+E MR + + PD
Sbjct: 276 RAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE--MREFGLMPD 333
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
++ +I G C G + AL ++EMV
Sbjct: 334 GVIYTMVIGGFCRAGLMLEALRVRDEMV 361
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + L+ Y+ ++ L R +D+ +++ + V P+ F +I + RA LE
Sbjct: 223 KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDA-CGVAPDVRSFNMLIGGFCRAGELE 281
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
AL+ + EM V V SF+ L+ G++D + + M ++ + PD Y +++
Sbjct: 282 EALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVI 341
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + + +A +V DEM+ P +VT+ TL+ GLC E R+ +A +L +M + V
Sbjct: 342 GGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEM-KERGV 400
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD F +LI G C G + AL F + + ++ D
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPD 438
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQ F + Q L+P +++ Y+ +I + R + ++ + H +
Sbjct: 423 ALQFF-------DTISDQRLRP---DIVTYNTLIDGMCRQGDLGKANELWDDM-HSREIF 471
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +++A DEM + + + ++N+++ G + +
Sbjct: 472 PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M V PD +YN L+HG V ++ +A+ + M +QP VT+ +I G +
Sbjct: 532 LPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSV 591
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ EA + + M ++PD + S+I G G + +EM++ + D
Sbjct: 592 HGNMQEADWVYKK-MGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Query: 115 SFNVQRTVKSFNTLLNA---MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
S N + + N ++++ L G++D T + ++ ++ V PD ++N+++ +
Sbjct: 152 SSNSEVNTYTLNIMVHSYCKTLQFGEVD--TVISEMEKRCVFPDVVTHNVMVDARFRAGD 209
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + D M+ + ++P LVT+ +++ GL R D+A ++ M V PD + F
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFR-AMDACGVAPDVRSFN 268
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G C GEL AL F +EM ++ D
Sbjct: 269 MLIGGFCRAGELEEALRFYKEMRGRRVTPD 298
>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR Y I+ +L AK F V+ L K+ + E+ +IS YG+A +L+HA
Sbjct: 51 FRARHRFYSTIVRRLSFAKQFSMVEDFLEHQKNFADITNEQFTI-RLISLYGKAGMLDHA 109
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI--MEKYVSPDACSYNILMH 164
++FDEM RTV+SFN LL+A + GK D++ + ++ ++PD S+NI++
Sbjct: 110 HRLFDEMPDLKCTRTVRSFNALLSACIDSGKFDKVQGFLRDFPVKLGITPDVVSFNIVIK 169
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G L+ V EM KR ++P L+TF TL+ G R + K+ +M NV
Sbjct: 170 GYCEIGNLDSGVLVLCEMEKRGIEPDLITFNTLLNGFYGNGRFVDGEKI-WTLMESKNVV 228
Query: 225 PDAQVFASLIKGL 237
P+ + + S ++GL
Sbjct: 229 PNVRSYNSRLRGL 241
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
FD+VQ L + P+ + F VI Y L+ + V EM ++ + +FN
Sbjct: 141 FDKVQGFLRDFPVKLGITPDVVSFNIVIKGYCEIGNLDSGVLVLCEMEKRGIEPDLITFN 200
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TLLN G+ ++ +ME K V P+ SYN + G + R+ +A ++ EM +
Sbjct: 201 TLLNGFYGNGRFVDGEKIWTLMESKNVVPNVRSYNSRLRGLELENRVMEAVELLGEMENK 260
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++P ++++ +I GLC + V+E KLKE+ PD + +LI L G
Sbjct: 261 GIRPDVMSYNAVIKGLCNDENVEEVKNWYRKLKEN-----GRMPDRVTYMTLIPYLRQKG 315
Query: 242 ELSLAL 247
+L A+
Sbjct: 316 DLDGAV 321
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 120/220 (54%), Gaps = 8/220 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L F N + Y+L + K ++E Q +L Q +P+E+ + V++ Y +
Sbjct: 448 LDTFTLNTVLYNLC-----KEKRYEEAQGLL-QSPPQRGFMPDEVSYGTVMAAYFKEYNS 501
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNIL 162
E AL+++DEM + ++ ++NTL+ + G++ D L ++MEK + PD +YNI+
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNII 561
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H LE+A++ ++M++ +P +VT TL+ GLCL ++D+ALKL E +
Sbjct: 562 IHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVE-KG 620
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K D + +LI+ +C G++ AL F +M ++ DA
Sbjct: 621 KKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDA 660
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ R M E + +L ++K D V P + ++S Y R ++ A +V + M
Sbjct: 242 YNTLLNAHCRKGMLGEARALLARMKKDG-VAPTRPTYNTLVSAYARLGWIKQATKVVEAM 300
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRR 171
++ + + ++N L + GK+D L ME+ + PD +YN L C R
Sbjct: 301 TANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRC 360
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDA 227
DA ++ +EM ++ ++ TLVT +I GLC + ++ AL K+ +D + PD
Sbjct: 361 SSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADD-----GLAPDV 415
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI C G ++ A +EMVR +++D
Sbjct: 416 ITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLD 449
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 36/216 (16%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F ++ + L AL M F + ++NTLLNA G +
Sbjct: 199 RLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 258
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L M+K V+P +YN L+ ++ A KV + M +P L T+ L G
Sbjct: 259 RALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAG 318
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASL--------------------------- 233
LC +VDEA +LK++M R+ + PD + +L
Sbjct: 319 LCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKA 378
Query: 234 --------IKGLCAVGELSLALGFKEEMVRNKIEMD 261
IKGLC GEL ALG +M + + D
Sbjct: 379 TLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPD 414
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 114/257 (44%), Gaps = 35/257 (13%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA F +L Y+++ L +A DE ++ +++ ++P+ + + + +
Sbjct: 298 EAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFK 357
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACS 158
R AL++ +EM V+ T+ + N ++ + G+++ + L ++ + ++PD +
Sbjct: 358 CRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVIT 417
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL----- 213
YN L+H + + A+ + DEM++R L+ T T++Y LC E R +EA L
Sbjct: 418 YNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPP 477
Query: 214 -----------------------KEDMMRVYN------VKPDAQVFASLIKGLCAVGELS 244
E +R+++ + P + +LIKGL +G L
Sbjct: 478 QRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLK 537
Query: 245 LALGFKEEMVRNKIEMD 261
A+ E++ + D
Sbjct: 538 EAIDKLNELMEKGLVPD 554
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R E L++L + +VP++ + +I Y + LE+A Q ++M
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELM-EKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKM 581
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + NTL+N + GK+D+ LF+ +EK D +YN L+ +
Sbjct: 582 VENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDV 641
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 213
+ A F +M R LQP T+ ++ L R +EA +
Sbjct: 642 DTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTLSQSFSSPLL 701
Query: 214 --------------KEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
K + V N + A + + L+ GLC G+ A +EM++ +
Sbjct: 702 KPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAILDEMMQKGM 761
Query: 259 EMDA 262
+D+
Sbjct: 762 SVDS 765
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+++I ++ +E ++ ++ V P F +I Y + L + A V DE
Sbjct: 312 YNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYS--FNPLIEGYCKQGLFDEAWGVTDE 369
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + + T ++N + A+ G+ID D +++ +PD SYN LMHG + R+
Sbjct: 370 MLNAGIYPTTSTYNIYIRALCEFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMRKF 426
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A +FD++ + P++VT+ TLI GLC ++ A +LKE+M + PD + +
Sbjct: 427 VEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQL-IYPDVITYTT 485
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+KG G LS+A +EM+R I+ D
Sbjct: 486 LLKGFVKNGNLSMATEIYDEMLRKGIKPDG 515
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 106/206 (51%), Gaps = 12/206 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ I L D+ +++L + P+ + + ++ Y + R A +FD++
Sbjct: 382 YNIYIRALCEFGRIDDARELLSSM-----AAPDVVSYNTLMHGYIKMRKFVEASLLFDDL 436
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ N+ ++ ++NTL++ + G ++ L + M + + PD +Y L+ G V + L
Sbjct: 437 KAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNL 496
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDMMRVYNVKPDAQV 229
A +++DEML++ ++P + T G ELR+ ++A +L E+M+ + PD +
Sbjct: 497 SMATEIYDEMLRKGIKPDGYAYTTRTVG---ELRLGDSEKAFRLHEEMVAEDHHAPDLTI 553
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
+ I GLC VG L A+ F+ ++ R
Sbjct: 554 YNVRIDGLCKVGNLEKAIEFQRKIFR 579
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 32/238 (13%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L ++M ++ Q++ + ++P I F ++ +A LE +++ EM
Sbjct: 243 NIVLRVLRDSRMMNKAQEVYETMVMHG-IMPTVITFNTMLDSCFKAGDLERVDKIWLEMK 301
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLE 173
N++ + ++N L+N GK++ M++ P S+N L+ G +
Sbjct: 302 RRNIEFSEVTYNILINGFSKSGKMEEARRFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFD 361
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---------------- 217
+AW V DEML + PT T+ I LC R+D+A +L M
Sbjct: 362 EAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDARELLSSMAAPDVVSYNTLMHGYI 421
Query: 218 --------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ N+ P + +LI GLC G L A KEEM I D
Sbjct: 422 KMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPD 479
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T++ L G+ DL+ +++ K +SP +Y +L+HG + RLE A++ EM
Sbjct: 588 TYTTVIRGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEM 647
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLC 238
KR ++P ++T L++G+C +DEA K++E+ + P+ + LI C
Sbjct: 648 KKRGVRPNVMTHNALLHGMCKAGNIDEAYRYLCKMEEE-----GISPNKYSYTILISKHC 702
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + + +EM+ +IE D
Sbjct: 703 DLDKWEEVVKLYKEMLDKEIEPDG 726
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+N ++ + G +++ + FQ I + PD +Y ++ G + R + A ++DEM
Sbjct: 554 YNVRIDGLCKVGNLEKAIE-FQRKIFRVGLVPDHVTYTTVIRGYLEKGRFKMARDLYDEM 612
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L +RL P+++T+ LI+G R+++A + +M + V+P+ +L+ G+C G
Sbjct: 613 LSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKK-RGVRPNVMTHNALLHGMCKAGN 671
Query: 243 LSLA 246
+ A
Sbjct: 672 IDEA 675
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
Y + + E L F++M +V++ N +L + +++ ++++ M + + P
Sbjct: 214 YTKKSMAEKCLLSFEKMIRKGFLPSVRNCNIVLRVLRDSRMMNKAQEVYETMVMHGIMPT 273
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++N ++ C + LE K++ EM +R ++ + VT+ LI G +++EA +
Sbjct: 274 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRFHG 333
Query: 216 DMMRV-YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DM R + V P + F LI+G C G A G +EM+ I
Sbjct: 334 DMQRSGFPVTPYS--FNPLIEGYCKQGLFDEAWGVTDEMLNAGI 375
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 16/242 (6%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
A +P +L+ +DP +A F+ P F++N +++ +
Sbjct: 38 ASTVTPEVAGRVLQQVEDPDVAWTFFQWAGNKPG---------FQHNAYTCAVLLNAFVK 88
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
AK +E ++L + + + P EI++ VI+ + +A ++ A ++ DEM V+ V
Sbjct: 89 AKRHEEAHRLLKE-ELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVL 147
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+TL+ + G+ID + F+ M + SP+ +YN +++G + R+++A ++FD+M
Sbjct: 148 LHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDME 207
Query: 184 KR-----RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
KR +P ++++ T+I LC RVD+A + + MR P+ ++SLI GLC
Sbjct: 208 KRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFK-RMRAVGCAPNVVTYSSLIDGLC 266
Query: 239 AV 240
V
Sbjct: 267 KV 268
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++ + L +A DE +IL ++ +++V P+ I + ++I + +A ++ A V
Sbjct: 324 NVVTYNVAVHGLCKAGRVDEAYRILLEMV-ESKVTPDVITYSSIIDGFCKAGRMDKADDV 382
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
F M +F TLL+ + + + F++ E V+ P +YN+LM
Sbjct: 383 FTRMMVHECIPHPVTFMTLLHGF---SEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDC 439
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +E A +++ +M +++ QP T+ LI LC RVDEA + D+M NV P
Sbjct: 440 VCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFL-DVMEADNVVP 498
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + +L++ LC GE+ A + +V
Sbjct: 499 NGAICHALVEVLCKQGEVDEACSVLDNVV 527
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 99/206 (48%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +A+ D+ + +++ P + + ++I + L++
Sbjct: 219 DVISYSTVIDALCKAQRVDKAYEYFKRMRA-VGCAPNVVTYSSLIDGLCKVDRPSECLEL 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M + FN +L+A+ + ++ F+ +++ P+ +YN+ +HG
Sbjct: 278 LLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R+++A+++ EM++ ++ P ++T+ ++I G C R+D+A + MM V+ P
Sbjct: 338 AGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM-VHECIPHPV 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
F +L+ G + A E+MV
Sbjct: 397 TFMTLLHGFSEHKKSREAFRVHEDMV 422
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 94/195 (48%), Gaps = 3/195 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N++ ++ ++ L + ++ Q +L + P + + + +A ++
Sbjct: 284 KGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK-PNVVTYNVAVHGLCKAGRVD 342
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A ++ EM V V +++++++ G++D+ D+F ++M P ++ L+
Sbjct: 343 EAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLL 402
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG ++ +A++V ++M+ P L T+ L+ +C V+ AL++ M R
Sbjct: 403 HGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKR-KKR 461
Query: 224 KPDAQVFASLIKGLC 238
+PD +A LI+ LC
Sbjct: 462 QPDCNTYAPLIQCLC 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 42/238 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RA+ DE ++ L ++ D VVP I ++ + ++ A V D +
Sbjct: 468 YAPLIQCLCRARRVDEAKEFLDVMEADN-VVPNGAICHALVEVLCKQGEVDEACSVLDNV 526
Query: 114 SSFNVQRTVKSFNTLLNAM--------------------------------LTCGKIDRM 141
Q ++F L+ + GK D
Sbjct: 527 VEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEA 586
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
++ Q++ K V PD +Y ++ R+E A F++M R P LVT+ LI
Sbjct: 587 VEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGE 646
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C DEA ++ E M+ P AQ +L L G+++ +VR +I
Sbjct: 647 ACSADMADEAFRIFEAMVAA-GFTPQAQTMRTLSSCL-------RDAGYQDLLVRQRI 696
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 122/219 (55%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + + ++ L + K +++ +++LH VP+E+ + V++ Y + E
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG-FVPDEVSYGTVMAAYFKEYNPE 506
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILM 163
AL+++D+M + ++ ++NTL+ + ++ D L +++EK + PD +YNI++
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIII 566
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H LE+A++ ++M++ +P +VT TL+ GLCL ++D+ALKL E +
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE-KGK 625
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K D + +LI+ +C VG++ AL F ++M ++ DA
Sbjct: 626 KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDA 664
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ R M E + +L ++K D + P + + ++S + R ++ A +V + M
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDG-IAPTQPTYNTLVSAFARLGWIKQATKVVESM 304
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRR 171
+++ + ++++N L + GK+D L ME+ + PD +YN L+ C R
Sbjct: 305 TAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRC 364
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
DA ++ +EM + ++PTLVT ++ LC E +++EAL K + + + PD +
Sbjct: 365 SSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALG-KLEKIAEEGLAPDVITYN 423
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI C G ++ A +EMV ++MD
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMD 453
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F ++ + L AL M F + ++NTLLNA G +
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L M++ ++P +YN L+ ++ A KV + M +P L T+ L G
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVG 322
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC +VDEA +LK++M R+ PD + +L+ S AL EEM
Sbjct: 323 LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEM 375
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+++ L +A DE ++ +++ + +P+ + + ++ + R A
Sbjct: 309 FEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDA 368
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHG 165
L++ +EM V+ T+ + N ++ ++ GK++ + L +I E+ ++PD +YN L+
Sbjct: 369 LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------ 213
+ + A+ + DEM+ + L+ T T++Y LC R ++A +L
Sbjct: 429 YCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488
Query: 214 ----------------KEDMMRVYN------VKPDAQVFASLIKGLCAVGELSLALGFKE 251
E +R+++ + P + +LIKGLC + L A+
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLN 548
Query: 252 EMVRNKIEMD 261
E+V + D
Sbjct: 549 ELVEKGLVPD 558
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 37/245 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R + E L++L + +VP+E + +I Y + LE+A + ++M
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELV-EKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + NTL+N + GK+D+ LF+ +EK D +YN L+ +
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDV 645
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 213
+ A FD+M + LQP T+ ++ L R +EA +
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705
Query: 214 -----KEDMMRVYNVKPDA-----------QVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E ++ + KP+A + + + GLC G+L A +EM++
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765
Query: 258 IEMDA 262
+ +D+
Sbjct: 766 MPVDS 770
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 38/201 (18%)
Query: 93 VISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKI--DRMTDLFQ-IM 148
+S Y R RL A Q+ + V+ ++++ N +L+A+ D+F+ ++
Sbjct: 141 ALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLI 200
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
E + P+ ++N+L+H L DA M L P VT+ TL+ C + +
Sbjct: 201 ELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLG 260
Query: 209 EA----LKLKED------------------------------MMRVYNVKPDAQVFASLI 234
EA ++K D M Y +PD + + L
Sbjct: 261 EARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLA 320
Query: 235 KGLCAVGELSLALGFKEEMVR 255
GLC G++ A K+EM R
Sbjct: 321 VGLCQAGKVDEAFRLKDEMER 341
>gi|449459126|ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Cucumis sativus]
Length = 428
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 134/264 (50%), Gaps = 25/264 (9%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L +++ LQ+DP + +LF N QP FR++ Y++ I KLG AKM++E+
Sbjct: 123 LCNVISLQRDPLVCFELF-------NWASQQP--RFRHDDSSYEITIKKLGEAKMYEEMD 173
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS---SFNVQRTVKSFNTL 128
+++Q + E ++ +I F+ AR L A+ +F M + N + +++++N L
Sbjct: 174 HVVNQAL-AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLL 232
Query: 129 LNAMLTCGK--------IDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
A L+ G+ ++ + LF+ M + + PD S N ++ G V+S + DA ++
Sbjct: 233 FTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRI 292
Query: 179 FDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
F +M + P +F LI+GLC + R D A +L + M+ P + + S++ L
Sbjct: 293 FHQMGVVYSCLPNSYSFDYLIHGLCAQARTDNAKELCNE-MKEKGFVPSSISYNSIVNAL 351
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ + EM+ N+ D
Sbjct: 352 ALNGEVEDAVNYLWEMIDNRRSPD 375
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++ + Q+ +D + P+ +I Y + + AL++F +M ++ SF+
Sbjct: 251 ETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSFD 310
Query: 127 TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ + + D +L M EK P + SYN +++ ++ +EDA EM+
Sbjct: 311 YLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDAVNYLWEMIDN 370
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
R P +T+ T++ LC + +V EA L ++
Sbjct: 371 RRSPDFITYKTVLDELCRQGKVVEATSLLREL 402
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 126/260 (48%), Gaps = 15/260 (5%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P SPF+L LL L D +++LF+ A K + + L+I KLG
Sbjct: 63 PISPFQLCKLLELPLDIPTSMELFQ---------RAGAQKGYSHTFDACYLLIDKLGAVG 113
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF-DEMSSFNVQRTVKS 124
F ++++L Q+K D ++ +E +F ++ YG+A L A ++ D ++ T KS
Sbjct: 114 DFKVIEKLLKQMK-DEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKS 172
Query: 125 FNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+N +L+ +L G R+ + ++ + VSP ++ ++M + ++ A + +M
Sbjct: 173 YNVVLD-ILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDM 231
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
K P V + TLI+ LC RV EAL+L EDM + +PD Q F +I GLC G
Sbjct: 232 AKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMF-LMCCEPDVQTFNDVIHGLCRAGR 290
Query: 243 LSLALGFKEEMVRNKIEMDA 262
+ A + M+ DA
Sbjct: 291 IHEAAKLLDRMLLRGFSTDA 310
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N + Y+ +I L + +E Q+ ++ P+ F ++I+ + +E
Sbjct: 441 KGLSLNTVGYNCLICALCKDGNIEEALQLFGEMS-GKGCKPDIYTFNSLINGLCKNHKME 499
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILM 163
AL ++ +M V ++NTL++A L I + L M P D +YN L+
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ +E +F+EML + + PT+++ LI GLC +V++ALK +DM+ +
Sbjct: 560 KALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIH-RGL 618
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + SLI GLC +G + A ++ I DA
Sbjct: 619 TPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDA 657
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 112/287 (39%), Gaps = 50/287 (17%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
T + + L R+ + + L K PNPN + Y+ +I+ +
Sbjct: 312 TYGYLMHGLCRMGQVDEARALLNKIPNPNT---------------VLYNTLISGYVASGR 356
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F+E + +L+ P+ F +I + L AL++ +EM + + V ++
Sbjct: 357 FEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYT 416
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L+N G+++ ++ M K +S + YN L+ +E+A ++F EM +
Sbjct: 417 ILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGK 476
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---------------------------- 217
+P + TF +LI GLC +++EAL L DM
Sbjct: 477 GCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQA 536
Query: 218 ------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
M D + LIK LC G + LG EEM+ I
Sbjct: 537 FKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI 583
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 13/218 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + KP Y ++ +I L + +E + H + + V+
Sbjct: 466 ALQLF-------GEMSGKGCKPDIYT---FNSLINGLCKNHKMEEALSLYHDMFLEG-VI 514
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
+ + ++ + ++ A ++ DEM ++N L+ A+ G +++ L
Sbjct: 515 ANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGL 574
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ ++ K + P S NIL+ G + ++ DA K +M+ R L P +VT+ +LI GLC
Sbjct: 575 FEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCK 634
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
V EA L + ++ ++PDA + +LI C G
Sbjct: 635 MGHVQEASNLF-NKLQSEGIRPDAITYNTLISRHCHEG 671
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
+ +++ L D +L + KH VP +I+ +I + ALQ+ ++
Sbjct: 208 FGVVMKALCMVSEVDSACSLLRDMAKHG--CVPNSVIYQTLIHALCENNRVSEALQLLED 265
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M + V++FN +++ + G+I L +++ + S DA +Y LMHG +
Sbjct: 266 MFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQ 325
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A +L + P V + TLI G R +EA L + M + +PDA F
Sbjct: 326 VDEA----RALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFN 381
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+I GL G L AL EMV + E
Sbjct: 382 IMIDGLVKKGYLVSALELLNEMVAKRFE 409
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Query: 66 MFDEVQQILHQLKHDT-RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
M D +QQ + R P + I + +I + +E L +F+EM + T+
Sbjct: 529 MRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTII 588
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S N L++ + GK++ Q ++ + ++PD +YN L++G +++A +F+++
Sbjct: 589 SCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKL 648
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEA 210
++P +T+ TLI C E ++A
Sbjct: 649 QSEGIRPDAITYNTLISRHCHEGMFNDA 676
>gi|7267637|emb|CAB80949.1| hypothetical protein [Arabidopsis thaliana]
Length = 1117
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F+ + +L KH + P IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLA--KHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L+ +++ G + + +LF+ + V P+ SYN+LM ++ L A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+ML+R + P + ++ LI G C + +V+ A++L +DM+ V PD +LI GLC
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PD----RTLIGGLCD 268
Query: 240 VGELSLALGFKEEMV 254
G + EEM+
Sbjct: 269 QGMFDEGKKYLEEMI 283
>gi|240255715|ref|NP_192049.4| uncharacterized protein [Arabidopsis thaliana]
gi|332656619|gb|AEE82019.1| uncharacterized protein [Arabidopsis thaliana]
Length = 1110
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 19/255 (7%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F+ + +L KH + P IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVLA--KHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L+ +++ G + + +LF+ + V P+ SYN+LM ++ L A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+ML+R + P + ++ LI G C + +V+ A++L +DM+ V PD +LI GLC
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PD----RTLIGGLCD 268
Query: 240 VGELSLALGFKEEMV 254
G + EEM+
Sbjct: 269 QGMFDEGKKYLEEMI 283
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 106/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+D++I K D+ + +K + VVP+ F ++S + + E ++ EM
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMK-EKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEM 227
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
++ TV +FN ++N + GK+ + D ME V P+ +YN ++HG R+
Sbjct: 228 FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRV 287
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A V D M R ++P T+G+LI G+C +++EA + E M + + P A + +
Sbjct: 288 EGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEI-GLLPTAVTYNT 346
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C G+L A G+++EMVR I
Sbjct: 347 LIDGYCNKGDLVKAFGYRDEMVRRAI 372
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ + + +E IL ++K + ++P + + +I Y L A DEM
Sbjct: 309 YGSLISGMCKGGKLEEASGILEKMK-EIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEM 367
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ TV ++N L++A+ GK+D + + M + + PD+ +YNIL++G
Sbjct: 368 VRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNA 427
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ + DEM+ + +QPTLVT+ +LIY L R+ A L E ++R PD +F +
Sbjct: 428 KKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIR-EGASPDLIMFNA 486
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G CA G L A +EM + I D
Sbjct: 487 LIDGHCANGNLDRAFALLKEMDKRNIVPD 515
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L+I L DE ++ + D+ +VP+ I + +I+ Y R + A + DEM
Sbjct: 379 YNLLIHALFLEGKMDEADGMIKDMG-DSGIVPDSITYNILINGYCRCGNAKKAFNLHDEM 437
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S +Q T+ ++ +L+ + ++ DLF+ I+ + SPD +N L+ G + L
Sbjct: 438 ISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNL 497
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ + EM KR + P VT+ TL+ G C E +V+EA +L ++M R ++PD + +
Sbjct: 498 DRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR-RGIRPDHISYNT 556
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G+++ A ++EM+
Sbjct: 557 LISGYSKRGDINDAFTIRDEML 578
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + VI Y +E A V D M + V+ ++ +L++ M GK++ +
Sbjct: 267 VKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEAS 326
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M E + P A +YN L+ G L A+ DEM++R + PT+ T+ LI+ L
Sbjct: 327 GILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHAL 386
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LE ++DEA + +DM + PD+ + LI G C G A +EM+ I+
Sbjct: 387 FLEGKMDEADGMIKDMGDS-GIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQ 443
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 8/192 (4%)
Query: 57 IITKLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+++K R K D++ ++I+ + P+ I+F +I + L+ A + EM
Sbjct: 455 VLSKRNRMKAADDLFEKIIRE-----GASPDLIMFNALIDGHCANGNLDRAFALLKEMDK 509
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
N+ ++NTL+ GK++ +L + M++ + PD SYN L+ G + D
Sbjct: 510 RNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIND 569
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A+ + DEML PTL+T+ LI GLC + D A +L ++M+ + PD + SLI
Sbjct: 570 AFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVS-KGITPDDSTYFSLI 628
Query: 235 KGLCAVGELSLA 246
+G+ V + S A
Sbjct: 629 EGIGKVDDSSEA 640
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 11/161 (6%)
Query: 109 VFDEMSSFNVQRTVKS---FNTLLNAMLTCGKIDRMTDLFQ----IMEKYVSPDACSYNI 161
VF E++ + KS F+ L+ A C ++ R D F+ + EK V P ++N
Sbjct: 150 VFHELAITRDRLGTKSSIVFDMLIRA---CCELKRGDDAFECFDMMKEKGVVPKIETFNA 206
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ + + E W ++ EM + +++ T+ TF +I LC E ++ +A M +
Sbjct: 207 MLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENL- 265
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
VKP+ + ++I G C+ G + A + M +E D+
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDS 306
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 133/258 (51%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ LLR ++D + A +F + + +N FR++ + ++I+KL
Sbjct: 10 SKQITPSKVEQLLRAERDLRKAKIIFDSASAEYSN-------GFRHDHTTFGVMISKLVS 62
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F +++L+++K + + EEI F ++ YGR + A++VF +M+ F + T K
Sbjct: 63 ANEFRPAEEMLNRMKEEKCRITEEI-FLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTDK 121
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
S+ ++ ++ ++ ++ M E V S N+L+ C S ++ A+++F E
Sbjct: 122 SYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFRE 181
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M KR P T+GTLI GLC + EA +L ++ M P ++ L+ GLC G
Sbjct: 182 MPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKE-MDTKGCSPSVVTYSCLMHGLCQAG 240
Query: 242 ELSLALGFKEEMVRNKIE 259
+ A+G ++M + IE
Sbjct: 241 NVDEAMGLFDKMKKKAIE 258
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A ++F EM ++ TL+N + GK +LF+ M+ K SP +Y+
Sbjct: 172 IDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LMHG + +++A +FD+M K+ ++P + T+ +L+ GLC EA++L E M+R
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ KP+ +++LI GLC G+L+ A+ + M ++ DA
Sbjct: 292 H-KPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDA 331
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 10/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L +A DE + ++K + P + +++ + A+++
Sbjct: 225 SVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKA-IEPNVFTYSSLMDGLCKNGGSLEAMEL 283
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+ M + + +++TL+N + GK+ + M+ + + PDA Y +++G
Sbjct: 284 LEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCN 343
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFG-------TLIYGLCLELRVDEALKLKEDMMRVY 221
R+ ++A DEM+ ++ P VT+ ++ GLC ++ + +L M R
Sbjct: 344 IRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGM-RTR 402
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ DA F SL+K C G+L A +EMV
Sbjct: 403 GISIDAGTFDSLVKCFCKKGDLHKAARIFDEMV 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 103/218 (47%), Gaps = 12/218 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y +I L + E +++ ++ DT+ P + + ++ +A ++ A+ +FD+
Sbjct: 194 YGTLINGLCKLGKTFEAKELFKEM--DTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDK 251
Query: 113 MSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
M ++ V ++++L++ + G ++ M L ++ K P+ +Y+ L++G +
Sbjct: 252 MKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGK 311
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L +A + D M + L+P +G +I G C + EA ++M+ + + P+ ++
Sbjct: 312 LAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMV-LGQISPNRVTWS 370
Query: 232 -------SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+++GLC G L+ + M I +DA
Sbjct: 371 LHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDA 408
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 8/221 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQ----LKHDTRVVP-EEIIFCNVISFYGRARL 102
R L+ +D T + KM EV ++ H L + VP +E +F +I YG+A +
Sbjct: 142 RSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGI 200
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ ++++F +M V+RT+KS+N+L +L G+ F +++ + V P +YN+
Sbjct: 201 VQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNL 260
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G +S RLE A + F++M R + P TF T+I G C ++DEA KL + M+
Sbjct: 261 MLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVE-MKGN 319
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P + ++IKG AV + L EEM + IE +A
Sbjct: 320 KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNA 360
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE AL+ F++M + + +FNT++N K+D LF M+ + P SY
Sbjct: 271 LETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTT 330
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R++D ++F+EM ++P T+ TL+ GLC ++ EA + ++MM +
Sbjct: 331 MIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKH 390
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
D +F L+ G+++ A
Sbjct: 391 IAPKDNSIFLKLLVSQSKAGDMAAA 415
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I R K DE +++ ++K + ++ P + + +I Y ++ L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ +++TLL + GK+ ++ + +M K+++P S I + V +
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 409
Query: 173 ED---AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR---V 220
D A +V M + +G LI C + A+KL KE ++R
Sbjct: 410 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 469
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRNKIEMDA 262
++P A + +I+ LC G+ + A + F++ M R + DA
Sbjct: 470 LEMEPSA--YNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDA 510
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 121/219 (55%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + + ++ L + K +++ +++LH VP+E+ + V++ Y + E
Sbjct: 448 KGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG-FVPDEVSYGTVMAAYFKEYNPE 506
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILM 163
AL+++D+M + ++ ++NTL+ + ++ D L + +EK + PD +YNI++
Sbjct: 507 PALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIII 566
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H LE+A++ ++M++ +P +VT TL+ GLCL ++D+ALKL E +
Sbjct: 567 HAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVE-KGK 625
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K D + +LI+ +C VG++ AL F ++M ++ DA
Sbjct: 626 KVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDA 664
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 107/210 (50%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ R M E + +L ++K D + P + + ++S + R ++ A +V + M
Sbjct: 246 YNTLLNAHCRKGMLGEARALLARMKRDG-IAPTQPTYNTLVSAFARLGWIKQATKVVESM 304
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRR 171
+++ + ++++N L + GK+D L ME+ + PD +YN L+ C R
Sbjct: 305 TAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRC 364
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
DA ++ +EM + ++PTLVT ++ LC E +++EAL E + + PD +
Sbjct: 365 SSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAE-EGLAPDVITYN 423
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI C G ++ A +EMV ++MD
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMD 453
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F ++ + L AL M F + ++NTLLNA G +
Sbjct: 203 RLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEA 262
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L M++ ++P +YN L+ ++ A KV + M +P L T+ L G
Sbjct: 263 RALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMG 322
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC +VDEA +LK++M R+ PD + +L+ S AL EEM
Sbjct: 323 LCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEM 375
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 111/250 (44%), Gaps = 35/250 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+++ L +A DE ++ +++ +P+ + + ++ + R A
Sbjct: 309 FEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDA 368
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHG 165
L++ +EM V+ T+ + N ++ ++ GK++ + L +I E+ ++PD +YN L+
Sbjct: 369 LRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------ 213
+ + A+ + DEM+ + L+ T T++Y LC R ++A +L
Sbjct: 429 YCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488
Query: 214 ----------------KEDMMRVYN------VKPDAQVFASLIKGLCAVGELSLALGFKE 251
E +R+++ + P + +LIKGLC + L A+
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLN 548
Query: 252 EMVRNKIEMD 261
E V + D
Sbjct: 549 EFVEKGLVPD 558
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 37/244 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R + E L++ + +VP+E + +I Y + LE+A + ++M
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNEFV-EKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKM 585
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + NTL+N + GK+D+ LF+ +EK D +YN L+ +
Sbjct: 586 VENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDV 645
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------------------- 213
+ A FD+M + LQP T+ ++ L R +EA +
Sbjct: 646 DTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLSQSFACPLL 705
Query: 214 -----KEDMMRVYNVKPDA-----------QVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E ++ + KP+A + + + GLC G+L A +EM++
Sbjct: 706 KPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEMMQKG 765
Query: 258 IEMD 261
+ +D
Sbjct: 766 MPVD 769
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 38/201 (18%)
Query: 93 VISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKI--DRMTDLFQ-IM 148
+S Y R RL A Q+ + V+ ++++ N +L+A+ D+F+ ++
Sbjct: 141 ALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLI 200
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
E + P+ ++N+L+H L DA M L P VT+ TL+ C + +
Sbjct: 201 ELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLG 260
Query: 209 EA----LKLKED------------------------------MMRVYNVKPDAQVFASLI 234
EA ++K D M Y +PD + + L
Sbjct: 261 EARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLA 320
Query: 235 KGLCAVGELSLALGFKEEMVR 255
GLC G++ A K+EM R
Sbjct: 321 MGLCQAGKVDEAFRLKDEMER 341
>gi|297810021|ref|XP_002872894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318731|gb|EFH49153.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1162
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 20/245 (8%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ Y ++I KLG
Sbjct: 47 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSQSSYLILILKLG 97
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
RA+ F+ + +L KH + P IF +I Y A++ E L+ F +M FN
Sbjct: 98 RARYFNLIDDVLA--KHRSSGYPLTGEIFTYLIKVYAEAKIPEKVLRTFYKMLEFNFTPQ 155
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L +++ G + + +LF+ + V P+ SYNILM ++ L A+++F
Sbjct: 156 PKHLNRILEVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNILMQAFCLNDDLSIAYQLF 215
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV------YNVKPDAQVFASL 233
+ML+R + P + ++ LI G C + +V+ A++L EDM+ + PD + ++
Sbjct: 216 GKMLERDVVPDVESYKILIKGFCRKGQVNGAMELLEDMLNKGFVPDRLSCNPDLVHYNTI 275
Query: 234 IKGLC 238
I G C
Sbjct: 276 ILGFC 280
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A+ KP NL Y+ ++ LG+A FDE ++L +++ D VP+ + +IS G+
Sbjct: 71 QAKGCKP---NLWTYNTLVDCLGKAGQFDEALRLLAEMR-DNGCVPDVRTYNCLISTLGK 126
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
A L A +F EM ++N+L+ + G+ + +L + ME++ PD +
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMT 186
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ L+ G A+K+F EM +R +P +TF L+ L RVD+AL+L D M
Sbjct: 187 YSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELL-DEM 245
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ VKP + +LI G VG+L A +EM RN + D
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPD 288
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ L +A +E Q + +LK + P+ + + +I+ GRA E AL+V
Sbjct: 8 NVVTYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM + + + ++NTL++ + G+ D L M + PD +YN L+
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ RL +A+ +F EM +R P T+ +LIYGL R +A++L E+M R + PD
Sbjct: 127 AGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER-HGCPPDVM 185
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++SLI GL GE A +EM R + D+
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDS 219
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +IT L +A DE Q+L +++ + P+ I + +I+ G+A LL A ++
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEG-CPPDTITYNTLINGLGKAGLLNDAGRL 346
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FD M S V +++TL+ A+ +++ LF+ ME + PD +Y ++
Sbjct: 347 FDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGK 406
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++DA ++F EM + L P ++T+ + L R EA K+ ED M+ + PD
Sbjct: 407 AGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFED-MKESGLLPDVA 465
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +L+ GL E+ A G +E++ D+
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDS 499
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 3/196 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++ LG+A D+ ++L ++K + V P + + +I+ +G+ L A + D
Sbjct: 220 ITFTALMDALGKAGRVDDALELLDEMK-ERGVKPGVVTYNALIAGFGKVGDLVEAYNLLD 278
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSR 170
EM + V +++ L+ ++ ++D + + MEK PD +YN L++G +
Sbjct: 279 EMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAG 338
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
L DA ++FD M + P +VT+ TLI L RV+ A L E+M V ++PD +
Sbjct: 339 LLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV-GIQPDLFTY 397
Query: 231 ASLIKGLCAVGELSLA 246
S+I L G++ A
Sbjct: 398 CSIITVLGKAGQVDDA 413
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 38/247 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +IT LG+A E +L + + P+ +C++I+ G+A ++ A ++
Sbjct: 358 DVVTYSTLITALGKAARV-ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRL 416
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + V ++N LN++ G+ +F+ M E + PD +Y+ L+ G
Sbjct: 417 FSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSK 476
Query: 169 SRRLEDAWKV---------------FDEMLK--------------------RRLQPTLVT 193
++ ++DA + FDE L+ + L P +
Sbjct: 477 TKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASS 536
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI L RV EA ED+ + KPD ++SLI L G++ A EEM
Sbjct: 537 YNALIDALAKAGRVSEAFNTLEDL-KEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595
Query: 254 VRNKIEM 260
+ +++
Sbjct: 596 SKRGLKL 602
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
M+ + SP+ +YN L++ + + E+A +F+E+ + P +V++ LI L +
Sbjct: 1 MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ AL++ + M+ KP+ + +L+ L G+ AL EM N
Sbjct: 61 EAALEVVAE-MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDN 108
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ YD ++ L + K D+ +L +L + + + F + ++ A ++
Sbjct: 463 DVATYDALLLGLSKTKEVDDACGLLKEL-IEQGCAFDSLKFDECLEILTSWGNVDEAHEL 521
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+S + S+N L++A+ G++ + L + E+ PD SY+ L+
Sbjct: 522 LQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQ 581
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +++ A+++ +EM KR L+ + ++ L+
Sbjct: 582 TGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611
>gi|449520100|ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Cucumis sativus]
Length = 428
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 134/264 (50%), Gaps = 25/264 (9%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L +++ LQ+DP + +LF N QP FR++ Y++ I KLG AKM++E+
Sbjct: 123 LCNVISLQRDPLVCFELF-------NWASQQP--RFRHDDSSYEITIKKLGEAKMYEEMD 173
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS---SFNVQRTVKSFNTL 128
+++Q + E ++ +I F+ AR L A+ +F M + N + +++++N L
Sbjct: 174 HVVNQAL-AVSSIGSETLYNTMIYFFTEARKLTRAVNIFKHMQNNRNLNCRPSIRTYNLL 232
Query: 129 LNAMLTCGK--------IDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
A L+ G+ ++ + LF+ M + + PD S N ++ G V+S + DA ++
Sbjct: 233 FTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRI 292
Query: 179 FDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
F +M + P ++ LI+GLC + R D A +L + M+ P + + S++ L
Sbjct: 293 FHQMGVVYSCLPNSYSYDYLIHGLCAQARTDNAKELCNE-MKEKGFVPSSISYNSIVNAL 351
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ + EM+ N+ D
Sbjct: 352 ALNGEVEDAVNYLWEMIDNRRSPD 375
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++ + Q+ +D + P+ +I Y + + AL++F +M ++ S++
Sbjct: 251 ETIRCLFRQMVNDDGIEPDIFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYD 310
Query: 127 TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ + + D +L M EK P + SYN +++ ++ +EDA EM+
Sbjct: 311 YLIHGLCAQARTDNAKELCNEMKEKGFVPSSISYNSIVNALALNGEVEDAVNYLWEMIDN 370
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
R P +T+ T++ LC + +V EA L ++
Sbjct: 371 RRSPDFITYKTVLDELCRQGKVVEATSLLREL 402
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 16/241 (6%)
Query: 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
++ DP ++ ++FK+ + +R + +I F ++++L ++
Sbjct: 66 IEPDPPISDKIFKS---------GPKMGSYRLGDSTFYSLINNYANLGDFKSLEKVLDRM 116
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCG 136
K + RV+ E+ F + YG+A L E A+ +FD M+ F +RT KSFN++LN ++ G
Sbjct: 117 KCEKRVIFEKC-FIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEG 175
Query: 137 KIDRMTDLFQ--IMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
R + + I K VS P+ ++N+++ ++DA +VF +M R+ +P +
Sbjct: 176 LFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVY 235
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ TL+ GLC R+DEA+ L D M++ P F LI GLC G+LS A +
Sbjct: 236 TYCTLMDGLCKADRIDEAVSLL-DEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDN 294
Query: 253 M 253
M
Sbjct: 295 M 295
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 2/160 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + F VI + L++ A+QVF +M+ + V ++ TL++ + +ID
Sbjct: 195 ISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAV 254
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ P ++N+L++G L A K+ D M + P VT+ TLI+GL
Sbjct: 255 SLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL 314
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
CL+ ++++A+ L + M+ V P+ + ++I GL G
Sbjct: 315 CLKGKLEKAISLLDRMVSSKCV-PNVVTYGTIINGLVKQG 353
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 95/195 (48%), Gaps = 4/195 (2%)
Query: 71 QQILHQLKHDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
Q+ +H K T E I++ VI R + A++V EM++ + ++L
Sbjct: 391 QEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSL 450
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ G R ++++ M K+ + + Y++L+HG ++++A V+ +ML +
Sbjct: 451 MKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGC 510
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLA 246
+P +V + ++I GL + V++A++L +M+ + + +PD + L+ LC +S A
Sbjct: 511 KPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRA 570
Query: 247 LGFKEEMVRNKIEMD 261
+ M+ + D
Sbjct: 571 IDLLNSMLDRGCDPD 585
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMT 142
+P E+ + +I LE A+ + D M S V ++ T++N ++ G+ +D
Sbjct: 301 IPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGAC 360
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + E+ + Y+ L+ G + ++A +F EM + + + + +I GLC
Sbjct: 361 VLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLC 420
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + D+A+++ +M P+A +SL+KG G A+ ++M ++
Sbjct: 421 RDGKPDDAVEVLSEMTN-KGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKH 473
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 11/247 (4%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L++ +KD L +F + +N FR++ + +I +L F + +L
Sbjct: 21 LIKAEKDINKTLVMFDSATEEYSNG-------FRHDHNTFGAMIHRLVSVNQFRPAEGML 73
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
++K + V E++ F + YGR A++VF +M F V+ T KS+ T+ + ++
Sbjct: 74 ERMKQEDCEVTEDV-FLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVE 132
Query: 135 CGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+ R ++ M EK + P S NIL+ C +E A+++F EM R QP
Sbjct: 133 ENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSY 192
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+GTLI GLC ++ +A +L D M + P + SLI GLC L A+ EE
Sbjct: 193 TYGTLINGLCKLGKISQAKELL-DEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEE 251
Query: 253 MVRNKIE 259
M+ N IE
Sbjct: 252 MIINGIE 258
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 84 VPEEIIFCNVI--SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+P ++ N++ + +E A ++F EM + Q ++ TL+N + GKI +
Sbjct: 151 IPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQA 210
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML----------------- 183
+L ME K +SP SY L+HG S L++A ++ +EM+
Sbjct: 211 KELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDG 270
Query: 184 ------------------KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+RRL P +VT+ TLI GLC E + EA+++ D MR+ +KP
Sbjct: 271 LCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEIL-DRMRLQGLKP 329
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DA ++ +I GLCA A F +EM I
Sbjct: 330 DAGMYGRIISGLCAACNYQEAANFIDEMALGGI 362
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/193 (19%), Positives = 95/193 (49%), Gaps = 10/193 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + + +++L +++ + + P + + ++I ++ L+ A+++ +EM
Sbjct: 194 YGTLINGLCKLGKISQAKELLDEME-EKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEM 252
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ V ++++L++ + G + +L ++M + + P+ +Y+ L++G +
Sbjct: 253 IINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKH 312
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD------ 226
+A ++ D M + L+P +G +I GLC EA D M + + P+
Sbjct: 313 REAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFI-DEMALGGISPNRASWTF 371
Query: 227 -AQVFASLIKGLC 238
++ +++GLC
Sbjct: 372 HVKMHNMVVQGLC 384
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 105/194 (54%), Gaps = 1/194 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I+ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 287 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 346
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + ++N L+N G + +++Q M + PD +++ L+ G +L
Sbjct: 347 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 406
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA +++ +M + R+QP + TF +I+ LC + R DEA++L ++ ++ P A ++
Sbjct: 407 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNP 466
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 467 VIDVLCKCGKVDEA 480
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L LI GR ++ D V + + D P+ F VI R +
Sbjct: 211 VEAYAYNKLMSSLI----GRGRVHD-VVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQV 265
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N +++ + ++ R ++ + +++ P+ ++
Sbjct: 266 QKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTS 325
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +LEDA V+++M+ + P VT+ LI G + A+++ + M R+
Sbjct: 326 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL- 384
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD F+SLI G C G+L AL +M +++I+
Sbjct: 385 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 422
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II L R+ + Q+ Q+ P+ ++S A LL+ + + + S F
Sbjct: 148 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 207
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLED 174
+ ++N L+++++ G++ + LF+ I ++ SPD S+N+++ G +++
Sbjct: 208 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQK 267
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ + M + P VT ++ GLC V ++ + R P+ F S+I
Sbjct: 268 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 327
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
G C G+L A+ +MV + I
Sbjct: 328 SGYCKAGKLEDAMAVYNDMVASGI 351
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ A + P N + Y+++I G+ ++ Q+ R P+ + F ++I
Sbjct: 344 NDMVASGIMP---NTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDG 399
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSP 154
Y R L+ AL+++ +M+ +Q V +F+ +++++ + D L + ++P
Sbjct: 400 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAP 459
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
A YN ++ ++++A + M ++ +P T+ LI G C++ R+ EA+
Sbjct: 460 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFF 519
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVG 241
+M+ PD+ I L G
Sbjct: 520 HEMVEA-GCSPDSITVNCFISCLLKAG 545
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 14/246 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L++ ++DP+ AL +F N Q + F +N Y II L + K F + +L
Sbjct: 56 LIKNERDPQHALDIF-------NMVSEQ--QGFNHNHATYASIIQNLAKYKKFQAIDGVL 106
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAML 133
HQ+ +DT V E I F N++ + ++ + E L +F + S ++ ++K+ +T LN ++
Sbjct: 107 HQMTYDTCKVHEGI-FLNLMKHFSKSSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLV 165
Query: 134 TCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PT 190
++D L ++ P+ C +NIL+ + L+ A++V EM R+ P
Sbjct: 166 ESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPN 225
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
LVT+ TLI GLC ++ EA++ E+M+ N+ PDA + LI G C G++ A
Sbjct: 226 LVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTIL 285
Query: 251 EEMVRN 256
E M N
Sbjct: 286 EFMKSN 291
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 101/203 (49%), Gaps = 3/203 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R N +++++ R +++ ++K P + + +I L+ A
Sbjct: 186 LRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEA 245
Query: 107 LQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
++ F+EM S N+ ++N L+N GK+DR + + M+ SP+ +Y++LM+
Sbjct: 246 IEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMN 305
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G RL++A +VF+E+ ++P +++ TLI LC RVDEA +L + M+ + +
Sbjct: 306 GYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQ-MKDKDCR 364
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
D F ++ GLC G AL
Sbjct: 365 ADTVTFNVMLGGLCREGRFDEAL 387
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 79/165 (47%), Gaps = 1/165 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +I L E + ++ ++P+ + + +I+ + + ++ A +
Sbjct: 225 NLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTI 284
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ M S V +++ L+N G++ ++F +I + PD SY L++
Sbjct: 285 LEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCR 344
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ R+++A ++ +M + + VTF ++ GLC E R DEAL +
Sbjct: 345 TGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDM 389
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 38/223 (17%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+++I + D + IL +K + P + +++ Y + L+ A +VF+
Sbjct: 263 LTYNILINGFCQRGKVDRARTILEFMKSNG-CSPNVFNYSVLMNGYCKEGRLQEAKEVFN 321
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
E+ S ++ S+ TL+N + G++D T+L Q M +K D ++N+++ G
Sbjct: 322 EIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREG 381
Query: 171 RLEDAWKVFDE-----------------------------------MLKRRLQPTLVTFG 195
R ++A + + ML R P T
Sbjct: 382 RFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVPHHATSN 441
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
TL+ LC V +A++ ++ + KP+ + + +L+ +C
Sbjct: 442 TLLLLLCNNGMVKDAVESLLGLLEM-GFKPEHESWFTLVDLIC 483
>gi|227463004|gb|ACP39954.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463006|gb|ACP39955.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 547
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 13/238 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L RL +AL F T A+ K F+YN Y+ +I LG+ K F ++ ++
Sbjct: 130 LKRLSNAGVIALSFF---------TWAEKQKGFKYNTESYNALIEALGKIKQFKLIRSLV 180
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++K +R + + F + + RAR +E A++ F+ M F + FN LL+ +
Sbjct: 181 NEMK--SRKLLNKDTFALISRRHARARKVEEAIEAFERMEEFGFKLETSDFNRLLDTLCK 238
Query: 135 CGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+++ +F M+K PD SY IL+ G L +V+ EM +P +VT
Sbjct: 239 SRHVEKANKVFDKMKKRRFVPDIKSYTILLEGWGKEHNLLRLDEVYLEMKYDGFEPDVVT 298
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+G LI C + D A++L + M N KP V+ +LI GL + LS AL F E
Sbjct: 299 YGILISAYCKAKKYDAAIELFHE-MEAKNCKPTPHVYCTLINGLGSEKRLSEALEFFE 355
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 109/213 (51%), Gaps = 10/213 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y ++I+ +AK +D ++ H+++ P ++C +I+ G + L A
Sbjct: 292 FEPDVVTYGILISAYCKAKKYDAAIELFHEMEAKN-CKPTPHVYCTLINGLGSEKRLSEA 350
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK----YVSPDACSYNIL 162
L+ F+ S ++N+L+ A +ID D FQ++++ P++ +Y+I+
Sbjct: 351 LEFFERFKSCGFTPEAPTYNSLVGAYCWSMRID---DAFQVIDEMRKHSAGPNSRTYDII 407
Query: 163 MHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+H + +RR +A+ F +M +PT+ T+ ++ C E RVD A ++ D M+
Sbjct: 408 LHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDRVDLAKQV-WDQMKAK 466
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +++ LI LC +L A + +EM+
Sbjct: 467 GVLPGMHMYSDLITSLCHKNKLGEACKYFQEML 499
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 4/196 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG K E + + K PE + +++ Y + ++ A QV DEM
Sbjct: 334 YCTLINGLGSEKRLSEALEFFERFK-SCGFTPEAPTYNSLVGAYCWSMRIDDAFQVIDEM 392
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRR 171
+ ++++ +L+ ++ + + FQ M E P +Y I++ R
Sbjct: 393 RKHSAGPNSRTYDIILHHLIKARRTNEAYFRFQKMSNEPGCEPTVSTYEIIVRMFCNEDR 452
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A +V+D+M + + P + + LI LC + ++ EA K ++M+ ++P A++F+
Sbjct: 453 VDLAKQVWDQMKAKGVLPGMHMYSDLITSLCHKNKLGEACKYFQEMLDA-GIRPPAKMFS 511
Query: 232 SLIKGLCAVGELSLAL 247
+L + L G+ AL
Sbjct: 512 NLKQALLDEGKNDEAL 527
>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
Length = 545
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 113/218 (51%), Gaps = 3/218 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F NL+ Y ++I L +++ D+ + Q+ D + P+ + + +I G+ R ++ A
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEA 259
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMH 164
+F+E + TV ++NT+++ + CG+I+ L+ M E ++ PD +Y+ L++
Sbjct: 260 YDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALIN 319
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +S R E A+++++EML P +VT+ TL+ GLC D+A+++ M
Sbjct: 320 GLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCD 379
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+ + LI C V L A+ +EM + DA
Sbjct: 380 PNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDA 417
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 94/171 (54%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + +++ + +A ++ AL +F EM + ++S N +L + + GKI ++
Sbjct: 135 PDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIA-VLRSHNIVLRGLCSGGKISMAWEV 193
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
F+ M SP+ SY I++ G SR+++ A +F +M+ + + P +VT+G LI GL +
Sbjct: 194 FKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQ 253
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
RV EA L E+ R P + ++I GLC G + AL ++MVR
Sbjct: 254 RRVKEAYDLFEE-ARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVR 303
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A +VF +MS + S+ +++ + K+D+ LF Q+++K + PD +Y L+
Sbjct: 190 AWEVFKDMSGIFSPNLI-SYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALID 248
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G RR+++A+ +F+E + PT+VT+ T+I GLC R++ AL L +DM+R ++K
Sbjct: 249 GLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLK 308
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD +++LI GL A EEM+ D
Sbjct: 309 PDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPD 345
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 39/242 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L + + + + + + P+ + +I+ + E A ++
Sbjct: 274 TVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYEL 333
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
++EM V ++NTLL+ + G D+ ++F+ M P+ +Y +L+
Sbjct: 334 YEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFC 393
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RL DA K+ EM R L P VTF T+I LC E R+DEA +L E + + KPD+
Sbjct: 394 KVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGK--TCKPDS 451
Query: 228 QVF-----------------------------------ASLIKGLCAVGELSLALGFKEE 252
+F +L+ G C G S AL E
Sbjct: 452 VLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHE 511
Query: 253 MV 254
M+
Sbjct: 512 MI 513
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L ++ D+ +I ++ P I + +I + + L A+++
Sbjct: 345 DVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKL 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM ++ +F T++ + +ID +LF+ + K PD+ +N ++ G
Sbjct: 405 AKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSVLFNTMLAGYCKI 464
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
R++DA K+ D ML PTL T+ L+ G C R +AL + +M+ +
Sbjct: 465 TRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEM 515
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N LL+ + +++ FQ M+ PD SYN LM+G + ++ A +F EM K
Sbjct: 106 NNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEM-K 164
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
L + ++ GLC ++ A ++ +DM +++ P+ + +I GLC ++
Sbjct: 165 DSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIFS--PNLISYTIMIDGLCKSRKVD 222
Query: 245 LALGFKEEMVRNKIEMD 261
A+ ++MV I D
Sbjct: 223 KAITLFKQMVDKAIYPD 239
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + ++I + ++ ++FDE ++ + +N L+N+ T G IDR ++
Sbjct: 363 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 422
Query: 148 MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
MEK ++PD +YN LM G + R+++A K+ DEM KR +QP LVT+ TLI G ++
Sbjct: 423 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 482
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V +AL+++ +MM P + +LI+GLC G+ A +EMV N I D
Sbjct: 483 VKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 536
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F +M + +FN +L + + GK R +L + M + P+A +YN ++ G
Sbjct: 138 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 194
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A + EM +R + P T+GT+I G C RVDEA+K+ ++M+ VK
Sbjct: 195 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 254
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P+A ++ +LI G C G+L AL +++ MV + M
Sbjct: 255 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 290
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 11/226 (4%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + P +Y Y +I+ + DE ++ ++ V PE +++ +I Y
Sbjct: 213 ERGGIAPNQYT---YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPD 155
L+ AL D M V TV ++N L++A+ G R T+ ++++E K ++ D
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG---RGTEAYELVEEMGGKGLALD 326
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL++G ++ A ++F+ M +R ++ T+VT+ +LIY L + +V E KL +
Sbjct: 327 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 386
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +R ++PD ++ +LI G + A EM + +I D
Sbjct: 387 EAVR-RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 7/218 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I I+ +++ + P + + VIS + + ++ A+
Sbjct: 182 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 241
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILM 163
+VFDEM + V+ +N L+ GK+D T L +++E+ V+ +YN+L+
Sbjct: 242 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--TALLYRDRMVERGVAMTVATYNLLV 299
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H + R +A+++ +EM + L + T+ LI G C E V +AL++ E+M R V
Sbjct: 300 HALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSR-RGV 358
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + SLI L G++ +E VR I D
Sbjct: 359 RATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPD 396
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R +L+ Y+ +I + D +I+ +++ R+ P+++ + ++ ++
Sbjct: 391 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKK-RIAPDDVTYNTLMRGLCLLGRVD 449
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A ++ DEM+ +Q + ++NTL++ G + D + ++M K +P +YN L+
Sbjct: 450 EARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 509
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
G + + +DA + EM++ + P T+ +LI GL E
Sbjct: 510 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 16/219 (7%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L Y+ I+ +A + + Q+ + V P+ + +I Y + ++E+A VF
Sbjct: 217 LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVF 276
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCG-------KIDRMTDLFQIMEKYVSPDACSYNILM 163
DEM + + ++NT++N G +D+MT+ M PD +Y L+
Sbjct: 277 DEMG---CKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCM-----PDTVTYTTLI 328
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G LE+A K +EM+ R +P ++T+ +IYGLCL VDEA ++ MR+ +
Sbjct: 329 DGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMT-RMRLNGL 387
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K + S++KGLC VG+L A +EMV +E DA
Sbjct: 388 KDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADA 426
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 15/254 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P + +++ QK+P AL F N + + ++ L Y I L +F
Sbjct: 113 NPXLVIQVIKSQKNPYHALFFF-----NWASNPNPNPNNYSHSHLCYVAITDLLISHGLF 167
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+L Q H + + YG + A+ F R + S+N
Sbjct: 168 STASSLL-QSHHRL----SDFAAAKFVKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNA 222
Query: 128 LLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L + +I +F + E V PD +Y ++ G +E+A VFDEM
Sbjct: 223 ILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM--- 279
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P LVT+ T+I G C + ++ A+K+ + M + PD + +LI G C GEL
Sbjct: 280 GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEE 339
Query: 246 ALGFKEEMVRNKIE 259
A+ + EEMV E
Sbjct: 340 AMKYMEEMVSRNCE 353
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 104/249 (41%), Gaps = 36/249 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I + + + +I+ Q+ +P+ + + +I Y + LE A++
Sbjct: 284 NLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKY 343
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+EM S N + V ++N ++ + G +D + M + + ++ ++ G V
Sbjct: 344 MEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCV 403
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM----------- 217
+L+DA + EM+ ++ +G ++ C + D+A+ L ++M
Sbjct: 404 VGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSS 463
Query: 218 -----------------------MRVYNVKPDAQVFASLIKGLC-AVGELSLALGFKEEM 253
M+ P+ ++++I GLC A G + F ++M
Sbjct: 464 FNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDM 523
Query: 254 VRNKIEMDA 262
RN +DA
Sbjct: 524 CRNGHHLDA 532
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK----HDTRVVPEEIIFCNVISFYGRARLLEH 105
N+L Y+ II L DE ++++ +++ D I+ + G+ L+
Sbjct: 355 NVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSIL--KGLCVVGK---LDD 409
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH 164
A + EM ++ K++ ++N GK D L + M+ + ++P S+N +
Sbjct: 410 AARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFR 469
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNV 223
V S + + A + +M + P +++ T+I GLC + R+ E + +DM R +
Sbjct: 470 ILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGH- 528
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
DA +++ L+KG C G +A+ EM+
Sbjct: 529 HLDASMYSWLVKGYCEDGNADMAMRLFCEML 559
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 3/209 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ +++ Y II +L + + Q + ++ HD + P + + +I A
Sbjct: 76 IKADVVIYTAIIDRLCKDGHHSKAQNLFTEM-HDKGIFPNVLTYNCMIDGCCSYGKWTDA 134
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
Q+ +M NV V +FN L+NA + GKI +L+ +++ + + PD +YN L+ G
Sbjct: 135 EQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDG 194
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
RL+DA +FD M+ + P ++T TLI G C RVD+ +KL +M+R + P
Sbjct: 195 FCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLR-RGLVP 253
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D+ + +LI G C G+L+ A +EM+
Sbjct: 254 DSVSYNTLIHGFCQAGDLNAAQDLFQEMI 282
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++EK D ++N LM+G R+ +A + D M++ QP VT+GT++ G+C
Sbjct: 1 MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
D AL L M + +K D ++ ++I LC G S A EM
Sbjct: 61 TDSALNLLRKMDESH-IKADVVIYTAIIDRLCKDGHHSKAQNLFTEM 106
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
R+LE A + D M Q ++ T++N M G D +L + M E ++ D
Sbjct: 24 GRVLE-AEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVI 82
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y ++ A +F EM + + P ++T+ +I G C + +A +L DM+
Sbjct: 83 YTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMI 142
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
NV PD F +LI G++S A EM+ I
Sbjct: 143 E-SNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNI 181
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + ++I + + L+ A +FD M S V + NTL+ C + R+
Sbjct: 181 IFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGG---CCRAKRVD 237
Query: 143 D----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
D L +++ + + PD+ SYN L+HG + L A +F EM+ +
Sbjct: 238 DGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 13/247 (5%)
Query: 22 PKLALQLFKNPNPNPNNTEAQ-----PLKPFRYNL---LHYDLIITKLGRAKMFDEVQQI 73
PKLALQL K T + L R ++ + +DL++ + DE +
Sbjct: 142 PKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKC 201
Query: 74 LHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+ +K + +VP+ I CN ++S + + +E A ++ EM + TV +FN ++N +
Sbjct: 202 FYMMK-EKGIVPK-IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVL 259
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
GK+ + + ME P+ SYN ++HG +E A ++ D M + ++P
Sbjct: 260 CKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 319
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
T+G+LI G+C E R++EA L + M+ + + P+A + +LI G C G+L A +++
Sbjct: 320 YTYGSLISGMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRD 378
Query: 252 EMVRNKI 258
EMV+ I
Sbjct: 379 EMVKKGI 385
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A +K + Y +I+ + + +E + ++ + +VP + + +I Y
Sbjct: 308 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV-EIGLVPNAVTYNTLIDGYCN 366
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
LE A DEM + +V ++N L++A+ G++ D+ + M +K + PDA +
Sbjct: 367 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 426
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G + A+ + +EML + ++PT VT+ +LIY L R+ EA L E ++
Sbjct: 427 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 486
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD +F +++ G CA G + A +EM R + D
Sbjct: 487 D-QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 528
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L++ L E ++ +++ ++P+ I + +I+ Y R + A + +EM
Sbjct: 392 YNLLVHALFMEGRMGEADDMIKEMRKKG-IIPDAITYNILINGYSRCGNAKKAFDLHNEM 450
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ T ++ +L+ + ++ DLF+ I+++ VSPD +N ++ G + +
Sbjct: 451 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNV 510
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+ + EM ++ + P VTF TL+ G C E +V+EA L ++M R +KPD + +
Sbjct: 511 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKR-RGIKPDHISYNT 569
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G++ A ++EM+
Sbjct: 570 LISGYGRRGDIKDAFRVRDEML 591
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I Y +E A ++ D M ++ ++ +L++ M G+++ + L
Sbjct: 282 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 341
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++E + P+A +YN L+ G LE A+ DEM+K+ + P++ T+ L++ L +
Sbjct: 342 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 401
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
E R+ EA + ++ MR + PDA + LI G G A EM+ IE
Sbjct: 402 EGRMGEADDMIKE-MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE 456
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 11/215 (5%)
Query: 52 LHYDLIITKLGRA----KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ Y+++I R K FD LH + P + + ++I R ++ A
Sbjct: 425 ITYNILINGYSRCGNAKKAFD-----LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 479
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
+F+++ V V FN +++ G ++R L + M+ K V PD ++N LM G
Sbjct: 480 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 539
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++E+A + DEM +R ++P +++ TLI G + +A +++++M+ + P
Sbjct: 540 CREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSI-GFNPT 598
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LIK LC E LA +EMV I D
Sbjct: 599 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 633
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R E + ++ D V P+ I+F ++ + +E A + EM
Sbjct: 462 YTSLIYVLSRRNRMKEADDLFEKIL-DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 520
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+V +FNTL+ GK++ L M++ + PD SYN L+ G +
Sbjct: 521 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDI 580
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA++V DEML PTL+T+ LI LC D A +L ++M+ + PD + S
Sbjct: 581 KDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN-KGISPDDSTYLS 639
Query: 233 LIKGLCAVGEL 243
LI+G+ V L
Sbjct: 640 LIEGMGNVDTL 650
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 10/196 (5%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
R KM D L ++K +VP+ +I+ VI + RA + AL+V DEM V
Sbjct: 310 RGKM-DHAAAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367
Query: 123 KSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
++NTLLN + K R+ D L ++ E+ V+PD C++ L+HG E A ++
Sbjct: 368 VTYNTLLNGLC---KQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQL 424
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
FD +L +RL+P +V + +LI G+C + + +A +L +D M + P+ ++ LI C
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDD-MHAREIFPNHVTYSILIDSHC 483
Query: 239 AVGELSLALGFKEEMV 254
G++ A GF +EMV
Sbjct: 484 EKGQVEEAFGFLDEMV 499
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 111/208 (53%), Gaps = 7/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N ++++ ++ FD+ ++ ++ + R V +++ NV I RA ++ A+
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEM--EKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
+ D M++ ++ + +FN++L + + D+ ++F+ M++ V+PD S+NIL+ G
Sbjct: 214 LVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPD 226
+E+A K + EM +R + P +V+F LI ++D A L+E M+ + PD
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE--MKGLGLVPD 331
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
++ +I G C G +S AL ++EMV
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMV 359
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQLF + Q L+P +++ Y+ +I + R + ++ + H +
Sbjct: 421 ALQLF-------DTLLHQRLRP---DVVAYNSLIDGMCRKGDLAKANELWDDM-HAREIF 469
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +E A DEM S + ++N+++ G + +
Sbjct: 470 PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF 529
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q +M+ + PD ++N L+HG + + A+ VF+ M K +QP VT+ +I G
Sbjct: 530 LQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSE 589
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++EA ++ + M ++PD + SLI G G A +EM+ D
Sbjct: 590 QGNMEEAGRVFKK-MGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPD 646
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+ N ++++ + D+ + MEK V PD ++N+L+ + ++ A + D M
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ L+P +VTF +++ GLC R D+A ++ M + +V PD + F LI G C VGE
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQC-SVAPDVRSFNILIGGFCRVGE 277
Query: 243 LSLALGFKEEMVRNKIEMD 261
+ A+ F +EM + + D
Sbjct: 278 VEEAMKFYKEMQQRGVTPD 296
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 126/244 (51%), Gaps = 38/244 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKQGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTL----------------LNAMLT---------------- 134
+++F +M V+RT+KS+N L N ML+
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 135 ---CGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK++ F+ M+ + +SPD +YN +++G +++E+A K F EM R ++PT
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ TLI G +VD+AL+L E+ M+ + +KP+A +++L+ GLC ++S A
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNAITYSTLLPGLCNAEKMSEARVXL 278
Query: 251 EEMV 254
+EM+
Sbjct: 279 KEMM 282
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVXLKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMXRL-SVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|270342070|gb|ACZ74655.1| hypothetical protein [Phaseolus vulgaris]
gi|270342076|gb|ACZ74661.1| hypothetical protein [Phaseolus vulgaris]
Length = 485
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 5/216 (2%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHAL 107
+N + +D+++ + M ++ + + +TR++P +I CN ++S R +
Sbjct: 37 WNPVIFDMLVKAYVKVGMVEKALETFRR-NIETRLIPN-VIACNCLLSGLSRFNYITQCW 94
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+V+ EM VQR +FN + + + G D++T + ME+ PD +YN L++
Sbjct: 95 EVYAEMGRLGVQRNAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEGFEPDLVTYNTLVNSY 154
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
RRLEDA+ ++ M R + P L+T+ TL+ GLC E +V EA +L M+ + PD
Sbjct: 155 CKKRRLEDAFYLYKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVH-RGIAPD 213
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +L+ G C GE+ + EM+ N+I D+
Sbjct: 214 IVSYNTLVCGYCRHGEMQMCRSILYEMIGNRICPDS 249
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 96/201 (47%), Gaps = 3/201 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N ++++ L + D+V L +++ + P+ + + +++ Y + R LE A +
Sbjct: 108 NAYTFNIMTHVLSKDGDTDKVTGFLEKMEEEG-FEPDLVTYNTLVNSYCKKRRLEDAFYL 166
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ M V + ++ TL+N + GK+ LF Q++ + ++PD SYN L+ G
Sbjct: 167 YKIMYVRGVMPNLITYTTLMNGLCEEGKVKEAHQLFHQMVHRGIAPDIVSYNTLVCGYCR 226
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ + EM+ R+ P +T ++ G + ++ AL E++ R + +K +
Sbjct: 227 HGEMQMCRSILYEMIGNRICPDSITCRVIVDGYARDGKLLSALNTVEELKR-FRMKIPEE 285
Query: 229 VFASLIKGLCAVGELSLALGF 249
V+ L+ LC G+ A F
Sbjct: 286 VYDYLVVALCKEGKPFAARSF 306
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/243 (19%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ R + IL+++ + R+ P+ I ++ Y R L AL
Sbjct: 213 DIVSYNTLVCGYCRHGEMQMCRSILYEMIGN-RICPDSITCRVIVDGYARDGKLLSALNT 271
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHG--- 165
+E+ F ++ + ++ L+ A+ GK + L +I E +P +YN L+
Sbjct: 272 VEELKRFRMKIPEEVYDYLVVALCKEGKPFAARSFLHRISEDGYTPKMNTYNKLVESLCE 331
Query: 166 ---------------------------------CVVSRRLEDAWKVFDEMLKRRLQPTLV 192
C V R +E A + +E++ + P +
Sbjct: 332 FNNEEEALILKSDMENKSMKVNAAAYRAVIICLCRVKRTVE-AEVLLEEIIGSDMLPDVE 390
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
LI G C E +VD+A+ L + + + V D + + +++K C VG ++ + +++
Sbjct: 391 ISRALIKGYCEENKVDKAVSLLKLFAKEFQVY-DTESYNAVVKVFCDVGNVTELMEVEDK 449
Query: 253 MVR 255
+++
Sbjct: 450 LLK 452
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 111/207 (53%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y II L + K+ DE + ++ + + P+ I + +I + A L A
Sbjct: 147 RPDVVMYSTIIDGLCKDKLVDEAYDLYSEM-NARGIFPDVITYTTLICGFCLAGQLMEAF 205
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ +EM N+ + ++NTL++ + GK+ +L +M +K V PD Y+ILM G
Sbjct: 206 GLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGY 265
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ A ++F M++ + P + ++ +I GLC RVDEA+ L +M+ N+ PD
Sbjct: 266 CLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLH-KNMIPD 324
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++SLI GLC +G ++ L +EM
Sbjct: 325 TVTYSSLIDGLCKLGRITTILDLTKEM 351
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++II L + K DE +L ++ H ++P+ + + ++I + + L + EM
Sbjct: 293 YNIIINGLCKGKRVDEAMNLLREMLHK-NMIPDTVTYSSLIDGLCKLGRITTILDLTKEM 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ ++N+LL+ + +D+ LF M E+ + P+ +Y L+ G RL
Sbjct: 352 HHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRL 411
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ +F +L + + T+ +I GLC E DEAL +K M P+A F
Sbjct: 412 KKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSK-MEDNGCIPNAVTFEI 470
Query: 233 LIKGL 237
+I+ L
Sbjct: 471 IIRSL 475
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 5/175 (2%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
I N + G R L+ ++ S+ + V ++T+++ + +D DL+ M
Sbjct: 120 ILLNGLCKIGETRCAIKLLRTIEDRST---RPDVVMYSTIIDGLCKDKLVDEAYDLYSEM 176
Query: 149 E-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ + PD +Y L+ G ++ +L +A+ + +EM+ + + P + T+ TLI LC E +V
Sbjct: 177 NARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKV 236
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
E+ L M + VKPD +++ L+ G C VGE+ A MV+ + D
Sbjct: 237 KESKNLLAVMTK-KGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDV 290
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ +L D++ + Q S+ LLN + G+ L + +E + PD Y+
Sbjct: 96 VKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYST 155
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +++A+ ++ EM R + P ++T+ TLI G CL ++ EA L +M+ +
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMI-LK 214
Query: 222 NVKPDAQVFASLIKGLCAVGELS-----LAL----GFKEEMVRNKIEMDA 262
N+ P+ + +LI LC G++ LA+ G K ++V I MD
Sbjct: 215 NINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDG 264
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
Q+ K + PD + +IL++ ++ ++ V ++LK QP + TL+ GLCL+
Sbjct: 35 QMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKG 94
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
V ++L D + + D + L+ GLC +GE A+
Sbjct: 95 EVKKSLHF-HDKVVAQGFQMDQVSYGILLNGLCKIGETRCAI 135
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 6/221 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA L+P N + Y+ ++ K K +E ++ + ++ + V+P + +I YGR
Sbjct: 419 EAVGLRP---NHVTYNSLVKKFCEMKNMEEAEKCIKKMV-EKGVLPNVETYNTLIDGYGR 474
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
+ L + Q+ +EM ++ V S+ L+N + I + L ++ + V P+A
Sbjct: 475 SCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQI 534
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+ G ++ +L+DA++ FDEM+ R + PTLVT+ LI GLC + +V EA L ++
Sbjct: 535 YNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEIT 594
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R + D + SLI G + G + AL E M ++ I+
Sbjct: 595 R-KGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIK 634
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 14/236 (5%)
Query: 25 ALQLFKNPNPNPN------NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
++ L K+P +P+ + + P+KP L D++++ +KM E ++ +K
Sbjct: 85 SMLLPKSPFSSPSHLYTLFSLSSTPMKP-----LFSDMLLSICSESKMVSESAELYMLMK 139
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
D V+P + + E LQ+F E+ ++ + + A + G +
Sbjct: 140 KDG-VLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDL 198
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
R +L M++ VSP YN+++ G +R++DA K+FDEML RR+ P +T+ TL
Sbjct: 199 KRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTL 258
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
I G C +++EA ++E M+V NV+P F SL+ GLC + A EEM
Sbjct: 259 IDGYCKVGQLEEAFNIRE-RMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEM 313
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + LKP N++ Y +I L + E + IL + H VVP I+ +I
Sbjct: 489 EKKGLKP---NVISYGCLINCLCKDANILEAEVILGDMVHRG-VVPNAQIYNMLIDGSCI 544
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
A L+ A + FDEM + + T+ ++N L+N + GK+ +L +I K +S D +
Sbjct: 545 AGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVIT 604
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + ++ A ++++ M K ++PTL T+ LI G C + + K+ ++M+
Sbjct: 605 YNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG-CGKEGLVLVEKIYQEML 663
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ N+ PD ++ +LI G++ A M I+ D
Sbjct: 664 QM-NLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPD 705
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + K + +++ ++ D RV P I + +I Y + LE A + + M
Sbjct: 220 YNVVIGGLCKEKRMKDAEKLFDEM-LDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERM 278
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
NV+ T+ +FN+LLN + ++ + + ME Y PD +Y L G + +
Sbjct: 279 KVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNV 338
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKPDAQV 229
+ + + +E +++ +Q T L+ LC E +++A E++++ + + P
Sbjct: 339 DASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKA----EEVLKKFLENGLAPVGVF 394
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
F +++ G C VG+++ A E+M
Sbjct: 395 FNTIVNGYCQVGDINKAYTTIEKM 418
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY 151
++S ++++ + +++ M V +V S N L ++++ + + LF +I+E
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ PD Y + V L+ A ++ M + + P + + +I GLC E R+ +A
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
KL ++M+ V P+ + +LI G C VG+L A +E M +E
Sbjct: 238 KLFDEMLD-RRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVE 284
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L+ Y+++I L + E + + ++ + + I + ++IS Y A ++ AL+++
Sbjct: 567 LVTYNILINGLCKKGKVMEAENLASEITRKG-LSFDVITYNSLISGYSSAGNVQKALELY 625
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGK--IDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+ M ++ T+ +++ L+ CGK + + ++Q +++ + PD YN L+H V
Sbjct: 626 ETMKKSGIKPTLNTYHRLIAG---CGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYV 682
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ A + M + +QP +T+ LI G E R+ + L D M++ + P
Sbjct: 683 EHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVND-MKIRGLIPKT 741
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + LI G C + + A + EM N
Sbjct: 742 ETYDILIVGHCKLKDFDGAYVWYREMFEN 770
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 94/187 (50%), Gaps = 3/187 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ ++ ++ L RA+M +E Q++L +++ VP+ + + + + ++ ++ +
Sbjct: 287 IITFNSLLNGLCRAQMMEEAQRVLEEMEV-YGFVPDRFTYTTLFDGHLKCGNVDASITLS 345
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVS 169
+E VQ + + LLNA+ G +++ ++ + +E ++P +N +++G
Sbjct: 346 EEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQV 405
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ A+ ++M L+P VT+ +L+ C ++EA K + M+ V P+ +
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVE-KGVLPNVET 464
Query: 230 FASLIKG 236
+ +LI G
Sbjct: 465 YNTLIDG 471
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 96/174 (55%), Gaps = 2/174 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+++ F +I+ +A E A +F+EM + N+Q V +F L++ + G+++
Sbjct: 562 ELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAA 621
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
D+ +M V P+ +YN L+HG S R+E+A + +EM+ P +T+G+L+Y
Sbjct: 622 RDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYA 681
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC R D+AL+L + ++ + PD + L+ GL G+ A+ EEMV
Sbjct: 682 LCRASRTDDALQLVSE-LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMV 734
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y+ + L + M E +++ L+ + RV P+ + F +I + ++ A
Sbjct: 322 NIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACS 381
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
VFD+M + V ++N L+N + K++R + + M +K V+PD +Y++L+
Sbjct: 382 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 441
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R+++A ++ M R P +VTF ++I GLC R EA ++ +DM + + PD
Sbjct: 442 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDK 501
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+ +LI GL G A + M
Sbjct: 502 ITYCTLIDGLFRTGRAGQAEALLDAM 527
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y+ + L + M E +++ L+ + RV P+ + F +I + + A
Sbjct: 816 NIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN 875
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
VFD+M + V ++N L+N + K++R + + M +K V+PD +Y++L+
Sbjct: 876 VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +++A ++ M R P +VTF ++I GLC + EA ++ +DM + + PD
Sbjct: 936 KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDK 995
Query: 228 QVFASLIKGL 237
+ +LI GL
Sbjct: 996 ITYCTLIDGL 1005
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 43/247 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ L ++ +E Q L ++ + VP+ I + +++ RA + ALQ+
Sbjct: 636 NVVTYNALVHGLCKSGRIEEACQFLEEMVS-SGCVPDSITYGSLVYALCRASRTDDALQL 694
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
E+ SF ++N L++ + G+ ++ +T L +++ K PD +YN L+
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754
Query: 169 SRRLEDAWKVFDEM---LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR------ 219
+ LE+A ++ +M + R P +VT+ LI GLC R+DEA +L ++MMR
Sbjct: 755 AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814
Query: 220 ----VYN----------------------------VKPDAQVFASLIKGLCAVGELSLAL 247
YN V PD F++LI GLC G+ A
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874
Query: 248 GFKEEMV 254
++M+
Sbjct: 875 NVFDDMI 881
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 13/226 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ L+P +++ + +I L +A + + IL L + V P + + ++ ++
Sbjct: 595 AKNLQP---DVMTFGALIDGLCKAGQVEAARDIL-DLMGNLGVPPNVVTYNALVHGLCKS 650
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDA 156
+E A Q +EM S ++ +L+ A+ + R D Q++ + S PD
Sbjct: 651 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALC---RASRTDDALQLVSELKSFGWDPDT 707
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YNIL+ G S + E A V +EM+ + P +VT+ TLI LC ++EA +L D
Sbjct: 708 VTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGD 767
Query: 217 M-MRVYN-VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
M RV P+ ++ LI GLC VG + A +EM+R ++
Sbjct: 768 MSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDV 813
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 99 RARLLEHALQVF-DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDA 156
RA AL++F EM+ V T+ ++NT++N + ++ +LF+ ++E+ PD
Sbjct: 192 RAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDV 251
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ + LE+A ++ +M R P +VT+ LI GLC R+DEA +L ++
Sbjct: 252 VTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQE 311
Query: 217 MMR----------VYN----------------------------VKPDAQVFASLIKGLC 238
M R YN V PD F++LI GLC
Sbjct: 312 MTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC 371
Query: 239 AVGELSLALGFKEEMV 254
G++ A ++M+
Sbjct: 372 KCGQIDEACSVFDDMI 387
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ +A DE ++LH + P + F ++I ++ A Q+
Sbjct: 429 DVITYSVLVDAFCKASRVDEALELLHGMAS-RGCTPNVVTFNSIIDGLCKSDRSGEAFQM 487
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
FD+M+ + ++ TL++ + G+ + L M PD ++N ++G
Sbjct: 488 FDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD---PDTYAFNCCINGLSK 544
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A +V++ ML+ L P VTF LI G C ++A L E+M+ N++PD
Sbjct: 545 LGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV-AKNLQPDVM 603
Query: 229 VFASLIKGLCAVGELSLA 246
F +LI GLC G++ A
Sbjct: 604 TFGALIDGLCKAGQVEAA 621
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ II L ++ ++ +L P+ + + +I +A LE A ++
Sbjct: 215 TIVTYNTIINGLCKSNELGAGMELFEELVERGHH-PDVVTYNTLIDSLCKAGDLEEARRL 273
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGC 166
+MSS + V +++ L+N + G+ID +L Q M + V P+ +YN + G
Sbjct: 274 HGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 333
Query: 167 VVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+A ++ + R+ P VTF TLI GLC ++DEA + +DM+ V
Sbjct: 334 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYV- 392
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ + +L+ GLC ++ A E MV + D
Sbjct: 393 PNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 429
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 9/195 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ +A DE ++LH + P + F ++I ++ A Q+
Sbjct: 923 DVITYSVLVDAFCKASHVDEALELLHGMAS-RGCTPNVVTFNSIIDGLCKSDQSGEAFQM 981
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
FD+M+ + ++ TL++ + G + L M PD ++N ++G
Sbjct: 982 FDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD---PDTYAFNCCINGL-- 1036
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L D + ML+ L P VTF LI G C ++A L E+M+ N++PD
Sbjct: 1037 -SKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV-AKNLQPDVM 1094
Query: 229 VFASLIKGLCAVGEL 243
F +LI GLC G++
Sbjct: 1095 TFGALIDGLCKAGQV 1109
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
G +K+ D V + LH++ + +VP+++ F +I+ +A E A +F+EM + N+Q
Sbjct: 1035 GLSKLGD-VSRALHRML-ELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPD 1092
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLF 145
V +F L++ + G+++ D+
Sbjct: 1093 VMTFGALIDGLCKAGQVEATWDIM 1116
>gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa]
gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 14/247 (5%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L++ ++DP+ AL++F N Q K F +N Y II KL RAK F V +
Sbjct: 55 NLIKHERDPQHALEIF-------NLVVEQ--KGFNHNHATYSTIIDKLARAKKFQAVDAL 105
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAM 132
L Q+ ++T E + F N++ ++ ++ E +++F+++ ++ ++K+ +T LN +
Sbjct: 106 LRQMMYETCKFHESL-FLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLL 164
Query: 133 LTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-P 189
+ ++D + + K + P+ C +NI + S LE A+ V EM K + P
Sbjct: 165 VESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYP 224
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
L+T+ TL+ GLC R+ EA++L E+M+ + PDA + LI G G++ A
Sbjct: 225 NLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKI 284
Query: 250 KEEMVRN 256
E M N
Sbjct: 285 MEFMKSN 291
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 4/223 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
QP+ + +L + L +K D ++ L L D + P IF I ++ ++
Sbjct: 145 QPIVREKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSG 204
Query: 102 LLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACS 158
LE A V EM ++ + +++TL++ + G++ +LF+ M + + PDA +
Sbjct: 205 DLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALT 264
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L++G +++ A K+ + M P + + L+ G C E R++EA+ E+ M
Sbjct: 265 YNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEE-M 323
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ +K D + LI C G + A+ EEM K + D
Sbjct: 324 KIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKAD 366
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 96/199 (48%), Gaps = 2/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y ++ L + E ++ ++ +++P+ + + +I+ + ++ A ++
Sbjct: 225 NLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKI 284
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+ M S V +++ L++ G+++ D F+ M+ + + D Y IL++
Sbjct: 285 MEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCR 344
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+++A + +EM + + + +VT L+ G C E R +EAL + + + + +
Sbjct: 345 FGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGML-NRLSSEGIYLNKA 403
Query: 229 VFASLIKGLCAVGELSLAL 247
+ ++ LC G+L AL
Sbjct: 404 SYRIVLNSLCQKGDLDKAL 422
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 3/191 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+++I D ++I+ +K + P + ++S + + LE A+ F+
Sbjct: 263 LTYNVLINGFSCWGKVDRAKKIMEFMKSNG-CSPNVFNYSALMSGFCKEGRLEEAMDAFE 321
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
EM F +++ + L+N G+ID L + M E D + N+L+ G
Sbjct: 322 EMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEG 381
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R E+A + + + + ++ ++ LC + +D+AL+L + P
Sbjct: 382 RTEEALGMLNRLSSEGIYLNKASYRIVLNSLCQKGDLDKALELL-GLTLSRGFVPHHATS 440
Query: 231 ASLIKGLCAVG 241
L+ GLC G
Sbjct: 441 NELLVGLCKAG 451
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 104/190 (54%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ + DE +++L + R P I + +I + RA L A +V
Sbjct: 266 DVVTYNSLMDGFCKVSKMDEAERLLEDMVG-RRCAPTVITYTTLIGGFSRADRLADAYRV 324
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M + + ++N LL+ + GK++ +L ++M EK +PD +Y+IL++G
Sbjct: 325 MEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCK 384
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++DA + + ML+R QP LVTF T+I G C +VDE K+ E +M+ + PD
Sbjct: 385 LGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLE-LMKEVSCTPDVV 443
Query: 229 VFASLIKGLC 238
+++LI G C
Sbjct: 444 TYSTLIDGYC 453
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + DE ++++ ++K ++ + P+ + + +++ + LE ++
Sbjct: 161 DVITYTSLIVGCCQTNALDEARKLMEKMK-ESGLTPDTVAYNALLNGLCKQNQLEEVSKL 219
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM + S+NT++ + GK + + + M EK PD +YN LM G
Sbjct: 220 LEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCK 279
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A ++ ++M+ RR PT++T+ TLI G R+ +A ++ EDM + + PD
Sbjct: 280 VSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKA-GISPDLV 338
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ GLC G+L A E MV D
Sbjct: 339 TYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPD 371
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 101/198 (51%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ ++ L + +EV ++L ++ R P+ + V++ + E A ++
Sbjct: 196 DTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGRE-PDTFSYNTVVACLCESGKYEEAGKI 254
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M V ++N+L++ K+D L + M + +P +Y L+ G
Sbjct: 255 LEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSR 314
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ RL DA++V ++M K + P LVT+ L+ GLC +++EA +L E M+ + PD
Sbjct: 315 ADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVE-KDCAPDVV 373
Query: 229 VFASLIKGLCAVGELSLA 246
++ L+ GLC +G++ A
Sbjct: 374 TYSILVNGLCKLGKVDDA 391
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 2/194 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
++ + L + P +C +I + + ++ A Q+ DEM + +N L
Sbjct: 74 DLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCL 133
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + GKID ++ ++M E+ PD +Y L+ GC + L++A K+ ++M + L
Sbjct: 134 IAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGL 193
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P V + L+ GLC + +++E KL E+M+ +PD + +++ LC G+ A
Sbjct: 194 TPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA-GREPDTFSYNTVVACLCESGKYEEAG 252
Query: 248 GFKEEMVRNKIEMD 261
E+M+ K D
Sbjct: 253 KILEKMIEKKCGPD 266
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ + RA + L++ +EM + V + NT+L A G +DR
Sbjct: 22 PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
F+ + + SP A +Y IL+HG +R+++A+++ DEM+++ P + LI GLC
Sbjct: 82 FR-GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKM 140
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++D A + + MM + PD + SLI G C L A E+M + + D
Sbjct: 141 GKIDAARNVLK-MMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPD 196
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ L + D+ + +L ++ + P + F +I + +A ++ +V
Sbjct: 371 DVVTYSILVNGLCKLGKVDDARLLL-EMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKV 429
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ M + V +++TL++ K +RM D F I+ +SPD SY+ ++ G +
Sbjct: 430 LELMKEVSCTPDVVTYSTLIDGYC---KANRMQDAFAILG--ISPDKASYSSMLEGLCST 484
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++E+A +V D M K+ PT + +I GLC R DEALK+ + +M +P+
Sbjct: 485 GKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQ-VMSERGCEPNLYT 543
Query: 230 FASLIKGLC 238
++ LI GLC
Sbjct: 544 YSILINGLC 552
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 104/243 (42%), Gaps = 32/243 (13%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL------ 103
NL+ ++ +I +A DE ++L +K + P+ + + +I Y +A +
Sbjct: 406 NLVTFNTMIDGFCKAGKVDEGHKVLELMK-EVSCTPDVVTYSTLIDGYCKANRMQDAFAI 464
Query: 104 -----------------------EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
E A +V D M+ T + ++ + + D
Sbjct: 465 LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ Q+M E+ P+ +Y+IL++G ++R+EDA V D ML++ P + T+ +LI
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLID 584
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C ++D A + + MR +PD + LI G C G + A+ + M+
Sbjct: 585 GFCKINKMDAAYQCFK-TMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCN 643
Query: 260 MDA 262
DA
Sbjct: 644 PDA 646
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
HY LII L + DE ++L Q+ + P + +I+ + + +E A+ V D
Sbjct: 508 HYALIIGGLCDVERGDEALKML-QVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDV 566
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
M V ++ +L++ K+D F+ M + PD +YNIL+ G S
Sbjct: 567 MLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGN 626
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+E A +V ML++ P T+ +L+ L E
Sbjct: 627 VEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P +Y L+ G + + ++ +EML RR P ++T T++ C +D AL
Sbjct: 22 PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M P A + LI GLC + A +EM++ DA
Sbjct: 82 FRGKMWC---SPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA 127
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 13/247 (5%)
Query: 22 PKLALQLFKNPNPNPNNTEAQ-----PLKPFRYNL---LHYDLIITKLGRAKMFDEVQQI 73
PKLALQL K T + L R ++ + +DL++ + DE +
Sbjct: 120 PKLALQLLKQVMGTRIATNRELFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKC 179
Query: 74 LHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+ +K + +VP+ I CN ++S + + +E A ++ EM + TV +FN ++N +
Sbjct: 180 FYMMK-EKGIVPK-IETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVL 237
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
GK+ + + ME P+ SYN ++HG +E A ++ D M + ++P
Sbjct: 238 CKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDS 297
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
T+G+LI G+C E R++EA L + M+ + + P+A + +LI G C G+L A +++
Sbjct: 298 YTYGSLISGMCKEGRLEEASGLFDKMVEI-GLVPNAVTYNTLIDGYCNKGDLERAFSYRD 356
Query: 252 EMVRNKI 258
EMV+ I
Sbjct: 357 EMVKKGI 363
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A +K + Y +I+ + + +E + ++ + +VP + + +I Y
Sbjct: 286 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV-EIGLVPNAVTYNTLIDGYCN 344
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
LE A DEM + +V ++N L++A+ G++ D+ + M +K + PDA +
Sbjct: 345 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 404
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G + A+ + +EML + ++PT VT+ +LIY L R+ EA L E ++
Sbjct: 405 YNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 464
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD +F +++ G CA G + A +EM R + D
Sbjct: 465 D-QGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 506
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L++ L E ++ +++ ++P+ I + +I+ Y R + A + +EM
Sbjct: 370 YNLLVHALFMEGRMGEADDMIKEMRKKG-IIPDAITYNILINGYSRCGNAKKAFDLHNEM 428
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ T ++ +L+ + ++ DLF+ I+++ VSPD +N ++ G + +
Sbjct: 429 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNV 488
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+ + EM ++ + P VTF TL+ G C E +V+EA L ++M R +KPD + +
Sbjct: 489 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKR-RGIKPDHISYNT 547
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G++ A ++EM+
Sbjct: 548 LISGYGRRGDIKDAFRVRDEML 569
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I Y +E A ++ D M ++ ++ +L++ M G+++ + L
Sbjct: 260 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 319
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++E + P+A +YN L+ G LE A+ DEM+K+ + P++ T+ L++ L +
Sbjct: 320 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 379
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
E R+ EA + ++ MR + PDA + LI G G A EM+ IE
Sbjct: 380 EGRMGEADDMIKE-MRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIE 434
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 11/215 (5%)
Query: 52 LHYDLIITKLGRA----KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ Y+++I R K FD LH + P + + ++I R ++ A
Sbjct: 403 ITYNILINGYSRCGNAKKAFD-----LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 457
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
+F+++ V V FN +++ G ++R L + M+ K V PD ++N LM G
Sbjct: 458 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 517
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++E+A + DEM +R ++P +++ TLI G + +A +++++M+ + P
Sbjct: 518 CREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSI-GFNPT 576
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LIK LC E LA +EMV I D
Sbjct: 577 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 611
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R E + ++ D V P+ I+F ++ + +E A + EM
Sbjct: 440 YTSLIYVLSRRNRMKEADDLFEKIL-DQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEM 498
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+V +FNTL+ GK++ L M++ + PD SYN L+ G +
Sbjct: 499 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDI 558
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA++V DEML PTL+T+ LI LC D A +L ++M+ + PD + S
Sbjct: 559 KDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN-KGISPDDSTYLS 617
Query: 233 LIKGLCAVGEL 243
LI+G+ V L
Sbjct: 618 LIEGMGNVDTL 628
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL+I K D+ + +K V+P +++S + ++ E A ++ EM
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMK-GKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
++ +V +FN ++N + GK+ + + +ME + P+ +YN ++HG R+
Sbjct: 183 FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A +FD M R ++P T+G+ I G+C E +++EA + E M + ++P A + +
Sbjct: 243 EGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEI-GLRPTAVTYNT 301
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
LI G C G L +A ++++MVR
Sbjct: 302 LIDGYCNKGNLEMAFDYRDKMVR 324
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 6/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ + +KP Y Y I+ + + +E +L ++K + + P + + +I Y
Sbjct: 253 KCRGVKPDSYT---YGSFISGMCKEGKLEEASGMLEKMK-EIGLRPTAVTYNTLIDGYCN 308
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
LE A D+M + TV ++N L++A+ K+D + + M EK + PD+ +
Sbjct: 309 KGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVT 368
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G ++ A+ + DEM+ + +QPT VT+ +LIY L R+ +A L E ++
Sbjct: 369 YNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIV 428
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R + PD +F +LI G CA G + A +EM + K+ D
Sbjct: 429 R-KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 109/202 (53%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L DE I+ ++ + +VP+ + + +I+ Y R ++ A + DEM
Sbjct: 334 YNMLIHALFLDCKMDEADGIIKEMS-EKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S +Q T ++ +L+ + G++ + DLF+ I+ K + PD +N L+ G + +
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ + EM + ++ P VTF TL+ G C E +V+ A +L E+M + +KPD + +
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEM-KSRGIKPDHISYNT 511
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G++ A ++EM+
Sbjct: 512 LISGYSKRGDMKDAFRVRDEML 533
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ ++P R +++K GR K D++ ++I+ + + P+ I+F +I +
Sbjct: 394 SKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRK-----GIFPDLIMFNALIDGHCA 448
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A + EM V +FNTL+ GK++ +L + M+ + + PD S
Sbjct: 449 NGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHIS 508
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G ++DA++V DEML PTL+T+ LI GLC D A +L ++M+
Sbjct: 509 YNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMI 568
Query: 219 RVYNVKPDAQVFASLIKGLCAV 240
+ P+ + SLI+G+ V
Sbjct: 569 S-KGITPNDNTYLSLIEGIGNV 589
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 5/235 (2%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTR 82
LQL + P + K F +N Y L+I LGR++ + + + + K
Sbjct: 101 TLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGA 160
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V + F ++I YG A L + +++VF M V +V +FN+LL+ +L G+
Sbjct: 161 VKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAK 220
Query: 143 DLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF ++++ Y V+PD ++NIL+ G ++ +++ + F EM + + P +VT+ TL+ G
Sbjct: 221 QLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDG 280
Query: 201 LCLELRVDEALKLKEDMMRVY-NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC +V A + + M++ N+ P+ + +LI+G C +++ AL EMV
Sbjct: 281 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M +Q+ ++ V P+ F +I + +++ F EMS F
Sbjct: 209 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 265
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
V ++NTL++ + GK+ ++ + M K +SP+ +Y L+ G + + +
Sbjct: 266 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 325
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + EM+ R L+P +T+ TLI GLC ++D+ ++ E M+ PD +L
Sbjct: 326 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 385
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
IK C +G+L A E+M +++ D+
Sbjct: 386 IKAHCTMGKLEEAFSVFEKMSELRVQPDS 414
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N + Y+ +I L A+ D++++IL + D +P+ +I +
Sbjct: 336 SRGLKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 392
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
LE A VF++MS VQ +++ L+ ++ G R + F ++ EK +
Sbjct: 393 GKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGC 452
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P +YN + + + + A +VF +++KR Q ++ TLI G C E +
Sbjct: 453 KPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFD 511
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R + PDA+ + +I GL G+ LA E+M+++
Sbjct: 512 LLVLMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKS 554
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ + +++ KVF M + + P++VTF +L+ + R A +L ++M+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Y V PD F LI+G C + F +EM R K + D
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 5/235 (2%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTR 82
LQL + P + K F +N Y L+I LGR++ + + + + K
Sbjct: 101 TLQLIRTPAKALHFFRWVEAKGFTHNEQSYFLMIEILGRSRNLNAARNFVFSIEKKSGGA 160
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V + F ++I YG A L + +++VF M V +V +FN+LL+ +L G+
Sbjct: 161 VKLGDRFFNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAK 220
Query: 143 DLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF ++++ Y V+PD ++NIL+ G ++ +++ + F EM + + P +VT+ TL+ G
Sbjct: 221 QLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDG 280
Query: 201 LCLELRVDEALKLKEDMMRVY-NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC +V A + + M++ N+ P+ + +LI+G C +++ AL EMV
Sbjct: 281 LCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMV 335
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M +Q+ ++ V P+ F +I + +++ F EMS F
Sbjct: 209 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 265
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
V ++NTL++ + GK+ ++ + M K +SP+ +Y L+ G + + +
Sbjct: 266 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 325
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + EM+ R L+P +T+ TLI GLC ++D+ ++ E M+ PD +L
Sbjct: 326 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 385
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
IK C +G+L A E+M +++ D+
Sbjct: 386 IKAHCTMGKLEEAFSVFEKMSELRVQPDS 414
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N + Y+ +I L A+ D++++IL + D +P+ +I +
Sbjct: 336 SRGLKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 392
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
LE A VF++MS VQ +++ L+ ++ G R + F ++ EK +
Sbjct: 393 GKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGC 452
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P +YN + + + + A +VF +++KR Q ++ TLI G C E +
Sbjct: 453 KPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFD 511
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R + PDA+ + +I GL G+ LA E+M+++
Sbjct: 512 LLVLMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKS 554
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ + +++ KVF M + + P++VTF +L+ + R A +L ++M+
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Y V PD F LI+G C + F +EM R K + D
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPD 270
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 108/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NLL Y+++I L R +E +L ++ P+ + + +++ Y + AL +
Sbjct: 272 NLLTYNMVINGLCRVGRIEETSGVLAEMDRKG-FAPDGVTYNTLVNGYCKVGNFHQALVL 330
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V ++ +L+N M G ++R + F Q+ + + P+ +Y L++G
Sbjct: 331 HSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQ 390
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++A++++DEM++ PT+VT+ L+ G C+ R++EA+ L M + PD
Sbjct: 391 KGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG-MEGKGLSPDVV 449
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++++I G C EL A EMV + DA
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA 483
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 38/224 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + +A + + Q+ H + P + + ++I+ + + ++ A ++
Sbjct: 342 DVVTYTSLINTMCKAGNLNRAMEFFDQM-HVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF------------------------ 145
+DEM T+ ++N LLN G+++ L
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460
Query: 146 ------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+++EK VSPDA +Y+ L+ G RRL +A +F EML + L P T
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFT 520
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +LI G C E ++EAL L ++M++ PD + LI GL
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIK-KGFLPDTVTYNVLINGL 563
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE L+ F+EM V ++NT++ A +ID L + M + + P+ +YN+
Sbjct: 219 LEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNM 278
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++G R+E+ V EM ++ P VT+ TL+ G C +AL L +M+R
Sbjct: 279 VINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLR-N 337
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ PD + SLI +C G L+ A+ F ++M
Sbjct: 338 GLPPDVVTYTSLINTMCKAGNLNRAMEFFDQM 369
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 5/199 (2%)
Query: 68 DEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
DE Q DT + +F V+ +E AL + D V S+
Sbjct: 111 DEKGNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSY 170
Query: 126 NTLLNAMLTCGK--IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N +L++++ C K I +++ VS + SYNIL+ G + LE + F+EM
Sbjct: 171 NAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEME 230
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ R P +VT+ T+I C R+DEA KL M + ++P+ + +I GLC VG +
Sbjct: 231 RNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRS-MGLEGLEPNLLTYNMVINGLCRVGRI 289
Query: 244 SLALGFKEEMVRNKIEMDA 262
G EM R D
Sbjct: 290 EETSGVLAEMDRKGFAPDG 308
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I+ + R + L+ A Q+ EM V ++++L+ + +++ DL
Sbjct: 446 PDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDL 505
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
FQ ++ K + PD +Y L++G L +A + DEM+K+ P VT+ LI GL
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNK 565
Query: 204 ELRVDEA----LKLKEDMMRVYNVKPDAQV----------FASLIKGLCAVGELSLALGF 249
+ R EA LKL D + D + +LIKG C G ++ A
Sbjct: 566 QARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQV 625
Query: 250 KEEMVR 255
E M++
Sbjct: 626 FESMIK 631
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 107/231 (46%), Gaps = 21/231 (9%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + L P +++ Y II R + D Q+ ++ + V P+ I + ++I
Sbjct: 440 EGKGLSP---DVVSYSTIIAGFCRYQELDRAFQMNAEMV-EKGVSPDAITYSSLIQGLCE 495
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
R L A +F EM + ++ ++ +L+N G ++ +L ++++K PD +
Sbjct: 496 QRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVT 555
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI---------------YGLCL 203
YN+L++G R +A ++ ++ P +T+ TLI G C+
Sbjct: 556 YNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCM 615
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ ++EA ++ E M++ N KP+ V+ +I G C G + A +EMV
Sbjct: 616 KGLMNEADQVFESMIK-RNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMV 665
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 92/209 (44%), Gaps = 24/209 (11%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y +I L + +E + ++ + + ++P+E + ++I+ Y + L AL + D
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEMLNKS-LLPDEFTYTSLINGYCKEGDLNEALNLHD 542
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHGC- 166
EM ++N L+N + K R + L ++ P+ +Y+ L+ C
Sbjct: 543 EMIKKGFLPDTVTYNVLINGL---NKQARTREAKRLLLKLFYDESIPNGITYDTLIESCS 599
Query: 167 --------------VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+ + +A +VF+ M+KR +P + +I+G C + V +A K
Sbjct: 600 DIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHK 659
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
L ++M+ + P +L+K L + G
Sbjct: 660 LYKEMVD-FGFIPHTVTIIALVKALYSEG 687
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 3/220 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
LK NL+ Y+++I L R E +IL ++ R VP+ + F +I+ Y
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMS-KRRYVPDRVTFNTLINGYCNVGN 323
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNI 161
AL + EM + V ++ TL+N+M G ++R M L Q+ ++ + P+ +Y
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G L+ A+++ EM++ PT++T+ LI G C+ R+++A L ++M+
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE-R 442
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD ++++I G C EL A K EMV I D
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 2/208 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+ I+ + R K ++ + + + ++ V P + +I + A LE
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L F EM V ++NT+++A KI L ++M K ++P+ SYN++++G
Sbjct: 223 LFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++++ ++ +EM KRR P VTF TLI G C +AL L +M++ + P
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK-NGLSP 341
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +LI +C G L+ A+ F ++M
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQM 369
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I + +A + + L Q++ D + P + +I + + L+ A Q+
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
EM T+ ++N L+N G+++ + L Q M
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460
Query: 149 ---------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
K +SPD +Y+ L+ G RRL + +F EML L P VT
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +LI C+E +D+AL+L ++M++ PD + LI G
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQ-KGFSPDIVTYNVLINGF 563
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LF-Q 146
+F V+ R L+ AL + + S+ V S+N +L+A++ + ++ + +F +
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E VSP+ +YNIL+ G + LE F EM + P +VT+ T+I C +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ EA KL +M + + P+ + +I GLC G++ EEM + +
Sbjct: 254 IGEAFKLLR-LMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ + + +IS + R + LE A Q+ EM + + V ++++L+ + ++ + D
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LFQ ++ + PD +Y L++ + L+ A ++ DEM+++ P +VT+ LI G
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564
Query: 203 LELRVDEALKL 213
+ R EA +L
Sbjct: 565 KQSRTKEAKRL 575
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 3/220 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
LK NL+ Y+++I L R E +IL ++ R VP+ + F +I+ Y
Sbjct: 265 ALKGLNPNLISYNVVINGLCREGQMKETSEILEEMS-KRRYVPDRVTFNTLINGYCNVGN 323
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNI 161
AL + EM + V ++ TL+N+M G ++R M L Q+ ++ + P+ +Y
Sbjct: 324 FHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTT 383
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G L+ A+++ EM++ PT++T+ LI G C+ R+++A L ++M+
Sbjct: 384 LIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE-R 442
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD ++++I G C EL A K EMV I D
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 2/208 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+ I+ + R K ++ + + + ++ V P + +I + A LE
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L F EM V ++NT+++A KI L ++M K ++P+ SYN++++G
Sbjct: 223 LXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++++ ++ +EM KRR P VTF TLI G C +AL L +M++ + P
Sbjct: 283 LCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK-NGLSP 341
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +LI +C G L+ A+ F ++M
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQM 369
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I + +A + + L Q++ D + P + +I + + L+ A Q+
Sbjct: 342 NVVTYTTLINSMCKAGNLNRAMEFLDQMR-DRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
EM T+ ++N L+N G+++ + L Q M
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460
Query: 149 ---------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
K +SPD +Y+ L+ G RRL + +F EML L P VT
Sbjct: 461 NQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVT 520
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +LI C+E +D+AL+L ++M++ PD + LI G
Sbjct: 521 YTSLINAYCIEGDLDKALRLHDEMIQ-KGFSPDIVTYNVLINGF 563
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LF-Q 146
+F V+ R L+ AL + + S+ V S+N +L+A++ + ++ + +F +
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E VSP+ +YNIL+ G + LE F EM + P +VT+ T+I C +
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK 253
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ EA KL +M + + P+ + +I GLC G++ EEM + +
Sbjct: 254 IGEAFKLLR-LMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ + + +IS + R + LE A Q+ EM + + V ++++L+ + ++ + D
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCD 504
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LFQ ++ + PD +Y L++ + L+ A ++ DEM+++ P +VT+ LI G
Sbjct: 505 LFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFN 564
Query: 203 LELRVDEALKL 213
+ R EA +L
Sbjct: 565 KQSRTKEAKRL 575
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 143 DLFQIME-KYVSPDACS--YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
DLFQ ++ Y + S +++++ C + A + + P ++++ ++
Sbjct: 116 DLFQCLKNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILD 175
Query: 200 GLCLELRVDEALKLKEDM---MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +R +++K+ E + M V P+ + LI+G C G L + L F EM RN
Sbjct: 176 AV---IRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERN 232
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 2/175 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + ++I + ++ ++FDE ++ + +N L+N+ T G IDR ++
Sbjct: 250 VTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 309
Query: 148 MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
MEK ++PD +YN LM G + R+++A K+ DEM KR +QP LVT+ TLI G ++
Sbjct: 310 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGD 369
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V +AL+++ +MM P + +LI+GLC G+ A +EMV N I D
Sbjct: 370 VKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 423
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 11/226 (4%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + P +Y Y +I+ + DE ++ ++ V PE +++ +I Y
Sbjct: 100 ERGGIAPNQYT---YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPD 155
L+ AL D M V TV ++N L++A+ G R T+ ++++E K ++PD
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG---RGTEAYELVEEMGGKGLAPD 213
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL++G ++ A ++F+ M +R ++ T+VT+ +LIY L + +V E KL +
Sbjct: 214 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFD 273
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +R ++PD ++ +LI G + A EM + +I D
Sbjct: 274 EAVR-RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F +M + +FN +L + + GK R +L + M + P+A +YN ++ G
Sbjct: 25 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 81
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A + EM +R + P T+GT+I G C RVDEA+K+ ++M+ VK
Sbjct: 82 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 141
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P+A ++ +LI G C G+L AL +++ MV + M
Sbjct: 142 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 177
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 7/218 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I I+ +++ + P + + VIS + + ++ A+
Sbjct: 69 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 128
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILM 163
+VFDEM + V+ +N L+ GK+D T L +++E+ V+ +YN+L+
Sbjct: 129 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--TALLYRDRMVERGVAMTVATYNLLV 186
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H + R +A+++ +EM + L P + T+ LI G C E V +AL++ E+M R V
Sbjct: 187 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR-RGV 245
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + SLI L G++ +E VR I D
Sbjct: 246 RATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPD 283
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R +L+ Y+ +I + D +I+ +++ R+ P+++ + ++ ++
Sbjct: 278 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEK-KRIAPDDVTYNTLMRGLCLLGRVD 336
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A ++ DEM+ +Q + ++NTL++ G + D + ++M K +P +YN L+
Sbjct: 337 EARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALI 396
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
G + + +DA + EM++ + P T+ +LI GL E
Sbjct: 397 QGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 437
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR++ + II LGRA + + IL + V +E +F +I YG+A +++ +
Sbjct: 148 FRHDRDTHLKIIEILGRASKLNHARCILLDMPKKG-VEWDEDLFVLLIDSYGKAGIVQES 206
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
++VF +M V+RT+KS++ L +L G+ F M + V P +YNI++ G
Sbjct: 207 VKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWG 266
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F+EM +RR+ P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 267 FFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVE-MKGRNIEP 325
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++IKG +VG + L EEM
Sbjct: 326 TVISYTTMIKGYVSVGRVDDGLRLFEEM 353
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 108/207 (52%), Gaps = 4/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + + + ++K + R+ P+ + + +I+ Y R + +E A + F EM
Sbjct: 260 YNIMIWGFFLSLKVETANRFFEEMK-ERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEM 318
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
N++ TV S+ T++ ++ G++D LF+ M+ + + P+A +Y+ L+ G ++
Sbjct: 319 KGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKM 378
Query: 173 EDAWKVFDEMLKRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+A V EM++R + P + F LI C ++D A + + M+R+ ++ +A +
Sbjct: 379 LEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRL-SIPTEAGHYG 437
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
LI+ C G A+ ++++ +I
Sbjct: 438 VLIENFCKSGVYDRAVKLLDKLIEKEI 464
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR++ + II LGRA + + IL + V +E +F +I YG+A +++ +
Sbjct: 148 FRHDRDTHLKIIEILGRASKLNHARCILLDMPKKG-VEWDEDLFVLLIDSYGKAGIVQES 206
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
++VF +M V+RT+KS++ L +L G+ F M + V P +YNI++ G
Sbjct: 207 VKVFQKMKELGVERTIKSYDALFKVILRRGRYMMAKRYFNAMLNEGVMPTCHTYNIMIWG 266
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F+EM +RR+ P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 267 FFLSLKVETANRFFEEMKERRISPDVVTYNTMINGYYRIKKMEEAEKFFVE-MKGRNIEP 325
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++IKG +VG + L EEM
Sbjct: 326 TVISYTTMIKGYVSVGRVDDGLRLFEEM 353
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 108/207 (52%), Gaps = 4/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + + + ++K + R+ P+ + + +I+ Y R + +E A + F EM
Sbjct: 260 YNIMIWGFFLSLKVETANRFFEEMK-ERRISPDVVTYNTMINGYYRIKKMEEAEKFFVEM 318
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
N++ TV S+ T++ ++ G++D LF+ M+ + + P+A +Y+ L+ G ++
Sbjct: 319 KGRNIEPTVISYTTMIKGYVSVGRVDDGLRLFEEMKSFGIKPNAVTYSTLLPGLCDGEKM 378
Query: 173 EDAWKVFDEMLKRRLQPTLVT-FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+A V EM++R + P + F LI C ++D A + + M+R+ ++ +A +
Sbjct: 379 LEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRL-SIPTEAGHYG 437
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
LI+ C G A+ ++++ +I
Sbjct: 438 VLIENFCKSGVYDRAVKLLDKLIEKEI 464
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +++I L + + + + L ++ + V P+ + + +I+ Y R LLE A ++
Sbjct: 357 NVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFEL 415
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D MS ++ V ++N ++N + GK R + M K +SPD +YNIL+ C
Sbjct: 416 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 475
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + DA ++FDEM + + P LV+F LI L +D+ALK DM + PD
Sbjct: 476 NDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNV 534
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G C G +S AL ++EM+ +D
Sbjct: 535 IYTILIGGFCRNGVMSEALKVRDEMLEQGCXLD 567
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 100/210 (47%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I R + E ++ ++ + + + + +++ + ++L A ++F EM
Sbjct: 536 YTILIGGFCRNGVMSEALKVRDEMLEQGCXL-DVVTYNTILNGLCKEKMLSEADELFTEM 594
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V +F TL+N G +++ LF++M ++ + PD +YN L+ G +
Sbjct: 595 TERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM 654
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E +++++M+ RR+ P +++G LI G C V EA +L ++M+ + +
Sbjct: 655 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE-KGFEATIITCNT 713
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KG C G A F M+ I D
Sbjct: 714 IVKGYCRAGNAVKADEFLSNMLLKGIVPDG 743
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF---------- 96
F+++L + +I L R++ + Q ++ ++ + V EI+ V+++
Sbjct: 232 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVF 291
Query: 97 ------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IME 149
Y +AR L + F + S + ++ + N+LL ++ G +D +++Q ++
Sbjct: 292 DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR 351
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
V + + NI+++ ++++E+ +M ++ + P +VT+ TLI C + ++E
Sbjct: 352 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 411
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
A +L D M +KP + ++I GLC G+ A G +EM++
Sbjct: 412 AFELM-DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 456
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 40 EAQPLKP--FRYNLLHYDLIIT-KLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
+ LKP F YN + L T K RAK + DE+ +I + DT ++ C
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI--GMSPDTATYNILLVEC---- 473
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
R + A ++FDEM S V + SF+ L+ + G +D+ F+ M+ ++P
Sbjct: 474 --CRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 531
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D Y IL+ G + + +A KV DEML++ +VT+ T++ GLC E + EA +L
Sbjct: 532 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELF 591
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M V PD F +LI G G ++ A+ E M++ ++ D
Sbjct: 592 TEMTE-RGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPD 637
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +++ Y+ +I + ++V ++ + + R+ P I + +I+ Y +
Sbjct: 634 LKP---DVVTYNTLIDGFCKGSEMEKVNELWNDMI-SRRIYPNHISYGILINGYCNMGCV 689
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNIL 162
A +++DEM + T+ + NT++ G + + L ++ K + PD +YN L
Sbjct: 690 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 749
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + ++ A+ + ++M L P ++T+ ++ G + R+ EA + M+
Sbjct: 750 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RG 808
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V PD + SLI G L A +EM++
Sbjct: 809 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 841
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ ++ + V P+ F +I+ Y + + A+ +
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M N++ V ++NTL++ +++++ +L+ M + + P+ SY IL++G
Sbjct: 626 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 685
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVT----------------------------------- 193
+ +A++++DEM+++ + T++T
Sbjct: 686 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 745
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ TLI G E +D A L + M + PD + ++ G G + A
Sbjct: 746 YNTLINGFIKEENMDRAFALV-NKMENSGLLPDVITYNVILNGFSRQGRMQEA 797
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++ + I+ RA + + L + +VP+ I + +I+ + + ++
Sbjct: 702 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG-IVPDGITYNTLINGFIKEENMD 760
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILM 163
A + ++M + + V ++N +LN G++ + +++E+ V+PD +Y L+
Sbjct: 761 RAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 820
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQP 189
+G V L++A++V DEML+R P
Sbjct: 821 NGHVTQNNLKEAFRVHDEMLQRGFVP 846
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + PE +F ++ R L A VFDEM S V+RTV SFNT+++ M G +D
Sbjct: 233 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 292
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L + M E V+PD +Y L+ G R+EDA VF++M R ++P V F LI
Sbjct: 293 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 352
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C + + L+L + MR V+PDA + +++ GLC +L A G EM
Sbjct: 353 DAHCKKGDAETMLELHRE-MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 406
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R ++ ++ +I+ + RA D + LH+ + V P+ + +I R +E
Sbjct: 269 RGVRRTVVSFNTMISGMCRAGDLDGAET-LHRRMSEAGVTPDVYTYGALIQGLCRVGRIE 327
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A VF++M ++ F L++A G + M +L + M E+ V PDA +YN ++
Sbjct: 328 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 387
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G +R L+ A + EM L+P VT+ TLI G C E +D A+++K++M+ V
Sbjct: 388 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMV-AEGV 446
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI GL G + A EM+ +E D
Sbjct: 447 GLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPD 484
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ + P+A +N+LM V L A VFDEM R ++ T+V+F T+I G+C
Sbjct: 229 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 288
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+D A L M V PD + +LI+GLC VG + A G E+M ++ +A
Sbjct: 289 GDLDGAETLHRRMSEA-GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 345
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 2/171 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH+ + V P+ + + +++ RAR L+ A + EM S ++ ++ TL++
Sbjct: 367 LHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 426
Query: 134 TCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++D ++ Q M + V D +Y L+ G + R DA +V EM++ L+P
Sbjct: 427 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 486
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
T+ +I C + V L+L ++M KP + ++ G C +G++
Sbjct: 487 TYTMVIDAFCRKGDVKTGLRLLKEMQN-KGRKPGVVTYNVIMNGFCKLGQM 536
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+E+ + +IS +A A +V EM ++ ++ +++A G + L
Sbjct: 449 DEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLL 508
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ M+ K P +YN++M+G ++++A + + M+ + P +T+ L+ G C
Sbjct: 509 KEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKH 568
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+V + +LK V PD V+ S++
Sbjct: 569 GKVTDIEELKSAKGTV----PDLGVYTSIV 594
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 125/244 (51%), Gaps = 38/244 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTL----------------LNAMLT---------------- 134
+++F +M V+RT+KS+N L N ML+
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 135 ---CGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK++ F+ M+ + +SPD +YN +++G +++E+A K F EM R ++PT
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPT 219
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ TLI G +VD+AL+L E+ M+ + +KP+ +++L+ GLC ++S A
Sbjct: 220 VVTYTTLIKGYVSVDQVDDALRLVEE-MKGFGIKPNTITYSTLLPGLCNAEKMSEARVIL 278
Query: 251 EEMV 254
+EM+
Sbjct: 279 KEMM 282
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+ +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C D A + + M+R+ +V +A + LI C VG+ A+ ++++ I
Sbjct: 301 HCKSGNPDAAADVLKAMIRL-SVPTEAGHYGXLIXNFCKVGQYDKAVKLLDKLIEKDI 357
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L R + D K AL +F+ + N F+++ YD+++ LGR K D++++IL
Sbjct: 93 LFRYKDDWKSALAIFRWAGSHSN---------FKHSQQSYDMMVDILGRMKAMDKMREIL 143
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++ ++ + I V+ + AR + A+++FD++ +++ +S N LL+ +
Sbjct: 144 EEMRQESLITLNTI--AKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCK 201
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+++ +++ ++ Y++P+A ++NIL+HG RR+E+A EM +P ++++
Sbjct: 202 EKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISY 261
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
T+I C E D L D M+ N P+ + +++ L + AL E M
Sbjct: 262 STIIQCYCQEQNFDRVYDLL-DEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERM 319
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 3/205 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L + K ++ ++I +LKH + P F +I + R +E A EM
Sbjct: 193 NVLLDTLCKEKFVEQAREIYLELKH--YIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMK 250
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
+ + V S++T++ DR+ DL M+ + SP+ +Y +M + + E
Sbjct: 251 GYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFE 310
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A +V + M +P + F +LIY L R+D+A + + M +V P+ + S+
Sbjct: 311 EALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSM 370
Query: 234 IKGLCAVGELSLALGFKEEMVRNKI 258
I C + A G +EM ++ +
Sbjct: 371 ISMFCYYAQEERAFGILKEMEKSGL 395
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 7/213 (3%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y II + + FD V +L +++ P + + ++ +A E ALQV
Sbjct: 258 VISYSTIIQCYCQEQNFDRVYDLLDEMQAQN-CSPNVVTYTTIMCALAKAEKFEEALQVV 316
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVV 168
+ M++ + FN+L+ + G+ID T +F++ + V+P+ +YN ++
Sbjct: 317 ERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCY 376
Query: 169 SRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELR-VDEALK-LKEDMMRVYNVKP 225
+ E A+ + EM K L +P + T+ LI C ++R +D L + DM+ Y++
Sbjct: 377 YAQEERAFGILKEMEKSGLCKPDIQTYHPLIKS-CFKMREIDTWLNDILNDMVNKYHIGL 435
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + LI GL A EEM I
Sbjct: 436 DLSTYTLLIHGLYRADRCKWAFDLFEEMADQDI 468
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 92/204 (45%), Gaps = 11/204 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N ++++I + +E + ++K + R P I + +I Y + + +
Sbjct: 222 NAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCR--PCVISYSTIIQCYCQEQNFDRVYD 279
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMH 164
+ DEM + N V ++ T++ A+ K ++ + Q++E+ PD +N L++
Sbjct: 280 LLDEMQAQNCSPNVVTYTTIMCAL---AKAEKFEEALQVVERMNAVGCRPDTLFFNSLIY 336
Query: 165 GCVVSRRLEDAWKVFD-EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ R++DA VF M K + P T+ ++I C + + A + ++M +
Sbjct: 337 TLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLC 396
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
KPD Q + LIK + E+ L
Sbjct: 397 KPDIQTYHPLIKSCFKMREIDTWL 420
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
D++ TK+G+ D++ Q L + + E + ++ Y + AL +F
Sbjct: 54 DILTTKIGKGNSEDDILQSLISDEGVNGIHLSENLINRLLFRYKDD--WKSALAIFRWAG 111
Query: 115 SF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
S N + + +S++ +++ + +D+M ++ + M + + +M V +R+ +
Sbjct: 112 SHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMRQESLITLNTIAKVMRRFVGARQWK 171
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA ++FD++ L+ + L+ LC E V++A ++ ++ + + P+A F L
Sbjct: 172 DAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLELK--HYIAPNAHTFNIL 229
Query: 234 IKGLCAVGELSLALGFKEEM 253
I G C + + A +EM
Sbjct: 230 IHGWCNIRRVEEAHWTIQEM 249
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R + L ++ +I LGRA D+ + V P + ++IS + E A
Sbjct: 325 RPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAF 384
Query: 108 QVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKY-VSPDACSYNILM 163
+ EM + + +++++ L+ + +ID + L ++ KY + D +Y +L+
Sbjct: 385 GILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLSTYTLLI 444
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
HG + R + A+ +F+EM + + P T
Sbjct: 445 HGLYRADRCKWAFDLFEEMADQDIVPRYKT 474
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 15/247 (6%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F+ + +L KH + P IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVL--AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L+ +++ G + + +LF+ + V P+ SYN+LM ++ L A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+ML+R + P + ++ LI G C + +V+ A++L +DM+ V PD + +L+ LC
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCR 272
Query: 240 VGELSLA 246
+L A
Sbjct: 273 KTQLREA 279
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP+ + +I + R + A+++ D+M + S+ TLLN++ ++
Sbjct: 221 VVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAY 280
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ K +PD YN ++ G R DA KV D+ML P V++ TLI GL
Sbjct: 281 KLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C + DE K E+M+ P V L+KG C+ G++ A E +++N
Sbjct: 341 CDQGMFDEGKKYLEEMIS-KGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKN 394
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 14/219 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F++ L Y ++I KLGR D VQ +L Q+K + E++ F NVI+ Y R L E
Sbjct: 73 KAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDL-FINVINTYRRVGLAE 131
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILM 163
AL++F + F Q TVK +N LL+AML+ + + ++ M++ P+ +YNIL+
Sbjct: 132 QALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILL 191
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ R++ A K+ EM + +P +V++ T+I + +V+EA +L
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELS------IRF 245
Query: 224 KPDAQVFASLIKGLC---AVGELSLALGFKEEMVRNKIE 259
+P+ V+ +LI G C V E+ L LG +MV I+
Sbjct: 246 QPNVSVYNALINGFCREYKVKEVFLLLG---QMVEKGID 281
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 105/199 (52%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +I +A +I +++ + +P +++ ++++ R+ + A +
Sbjct: 388 NVSTYGALIDGFAKAGDLVGASEIWNKMMTNG-CIPNVVVYTSMVNVLCRSSMFSQAWSL 446
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
++MS+ N +FNT + + G+++ +LF ME+Y SP+ +YN ++ G +
Sbjct: 447 IEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLK 506
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+++A ++ EM ++ ++ LVT+ T+ G C + +EALKL M+ V VKPDA
Sbjct: 507 ENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKML-VGGVKPDAI 565
Query: 229 VFASLIKGLCAVGELSLAL 247
+ +L C G++ A+
Sbjct: 566 TYNTLTYAYCMQGKVKTAI 584
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L R+ MF + ++ ++ D P + F I + +E A+ +
Sbjct: 423 NVVVYTSMVNVLCRSSMFSQAWSLIEKMSTD-NCPPNTVTFNTFIKGLCCSGRVECAINL 481
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F +M + +K++N +L+ +L +I +L ME K + + +YN + G
Sbjct: 482 FCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCN 541
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E+A K+ +ML ++P +T+ TL Y C++ +V A++L + + P+
Sbjct: 542 VGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVA 601
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ SL+ G+C + A+ + ++M+ I ++A
Sbjct: 602 AYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNA 635
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I+ + + +E +++ R P ++ +I+ + R ++ +
Sbjct: 218 DVVSYTTVISSMSKLGKVEEAREL------SIRFQPNVSVYNALINGFCREYKVKEVFLL 271
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M + V +++T+++++ G ++ ++ ++ + SP+ ++ LM G +
Sbjct: 272 LGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFM 331
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+ +A +++ M + +P +V + TLI+GLC ++ EA+ + M R P+
Sbjct: 332 RGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMER-NGCSPNVS 390
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI G G+L A +M+ N
Sbjct: 391 TYGALIDGFAKAGDLVGASEIWNKMMTN 418
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQ 146
FCNV F E AL++ +M V+ ++NTL A GK+ ++ D
Sbjct: 539 FCNVGKF-------EEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLS 591
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
K+V P+ +Y L+ G +E+A D+ML + T+ L+ GL
Sbjct: 592 AGGKWV-PEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGL 645
>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 753
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II LGRA + + IL + V +E +F +I YG+A +++ A+++F++M+
Sbjct: 148 IIEILGRASKLNHARCILLDMPKKG-VEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNEL 206
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
V+R++KS++ L +L G+ +F +++ + P +YNI++ G +S RLE A
Sbjct: 207 GVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETA 266
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ +D+M R + P +VT+ T+I G +++EA KL + M+ N+ P + ++IK
Sbjct: 267 MRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVE-MKGKNIAPTVISYTTMIK 325
Query: 236 GLCAVGELSLALGFKEEM 253
G AV + L EEM
Sbjct: 326 GYVAVDRVDDGLRLLEEM 343
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE A++ +D+M + + V ++NT++N K++ LF M+ K ++P SY
Sbjct: 263 LETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTT 322
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G V R++D ++ +EM ++P + T+ TL+ GLC ++ EA + +M+ +
Sbjct: 323 MIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARH 382
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F L+ C G+L A M+R I +A
Sbjct: 383 LAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEA 423
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 106/219 (48%), Gaps = 10/219 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E +++ ++K + P I + +I Y ++ L++
Sbjct: 281 DVVTYNTMINGFYRFKKMEEAEKLFVEMK-GKNIAPTVISYTTMIKGYVAVDRVDDGLRL 339
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+EM SFN++ V +++TLL + K+ D L +++ ++++P S + + C
Sbjct: 340 LEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSCQC 399
Query: 169 -SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRVY 221
+ L A V + M++ + +G LI C D A+K KE ++R
Sbjct: 400 KAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYLDKLIEKEIILRPQ 459
Query: 222 N-VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ ++ ++ + +I+ LC+ G+ A F ++++ ++
Sbjct: 460 STLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQ 498
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMT 142
V + + F N+I + + + A ++F M V R ++ ++ + L G+ D T
Sbjct: 497 VQDPLAFNNLICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKT 556
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++E PD + +M R++ A +V M+++ ++ + G ++ L
Sbjct: 557 ALDGMLEDGHVPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGVKENMDLVGKILEALL 616
Query: 203 LELRVDEALKLKEDMMR 219
+ V+EAL E +M+
Sbjct: 617 MRGHVEEALGRIELLMQ 633
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 104/194 (53%), Gaps = 1/194 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I+ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 292 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + ++N L+N G + +++Q M + PD +++ L+ G +L
Sbjct: 352 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 411
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA +++ +M + R+QP + TF +I+ LC + R DEA+ L ++ ++ P A ++
Sbjct: 412 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNP 471
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 472 VIDVLCKCGKVDEA 485
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L LI GR ++ D V + + D P+ F VI R +
Sbjct: 216 VEAYAYNKLMSSLI----GRGRVHD-VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQV 270
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N +++ + ++ R ++ + +++ P+ ++
Sbjct: 271 QKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTS 330
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +LEDA V+++M+ + P VT+ LI G + A+++ + M R+
Sbjct: 331 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL- 389
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD F+SLI G C G+L AL +M +++I+
Sbjct: 390 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 427
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II L R+ + Q+ Q+ P+ ++S A LL+ + + + S F
Sbjct: 153 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 212
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLED 174
+ ++N L+++++ G++ + LF+ I ++ SPD S+N+++ G +++
Sbjct: 213 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 272
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ + M + P VT ++ GLC V ++ + R P+ F S+I
Sbjct: 273 ALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 332
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
G C G+L A+ +MV + I
Sbjct: 333 SGYCKAGKLEDAMAVYNDMVASGI 356
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ A + P N + Y+++I G+ ++ Q+ R P+ + F ++I
Sbjct: 349 NDMVASGIMP---NTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDG 404
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSP 154
Y R L+ AL+++ +M+ +Q V +F+ +++++ + D L + ++P
Sbjct: 405 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAP 464
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
A YN ++ ++++A + M ++ +P T+ LI G C++ R+ EA+
Sbjct: 465 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFF 524
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVG 241
+M+ PD+ I L G
Sbjct: 525 HEMVEA-GCSPDSITVNCFISCLLKAG 550
>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
Length = 788
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 12/241 (4%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
++LR + P AL F+ FR++ Y II L RA M + + I
Sbjct: 150 AVLRGARHPDHALHFFRWVEKTG----------FRHDPDTYREIILLLARASMLNHARCI 199
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L D V P E +F ++I YG AR+ + A+++F + V RTV+S++ + A+L
Sbjct: 200 LLDDMPDRLVPPSEDMFASLIEGYGCARIPQEAVKIFRRLPELGVTRTVRSYDAVFKAIL 259
Query: 134 TCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++ LF M + V P +YN L+ G +S ++E A + F +M +R + P LV
Sbjct: 260 RSGRVAMARRLFNAMIAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLV 319
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ T++ G ++D+A K+ +M P++ + +IKG G + L E
Sbjct: 320 TYNTILNGWARAKKMDDAEKVFAEMT-AAGFAPNSISYNIMIKGYVCSGRVDDGLRMFSE 378
Query: 253 M 253
M
Sbjct: 379 M 379
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
+E A + F +M + + ++NT+LN K+D +F ++ +P++ SYNI
Sbjct: 299 METAQRFFADMKERGIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNI 358
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRV 220
++ G V S R++D ++F EM ++ L+ + TF L+ GLC ++ R EA K +M ++
Sbjct: 359 MIKGYVCSGRVDDGLRMFSEMGEKGLRFSEKTFAALMPGLCDDVGRAAEARKALNEMAKL 418
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLAL 247
D +F L+ LC G+L AL
Sbjct: 419 QLTPSDKSIFLRLVTSLCESGDLEGAL 445
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 3/175 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +++ + RA+ ++ A +VF EM++ S+N ++ + G++D
Sbjct: 314 IAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCSGRVDDGL 373
Query: 143 DLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIY 199
+F M EK + ++ LM G C R +A K +EM K +L P+ + F L+
Sbjct: 374 RMFSEMGEKGLRFSEKTFAALMPGLCDDVGRAAEARKALNEMAKLQLTPSDKSIFLRLVT 433
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC ++ AL++ + +V D + L++ LC + A+ +E++
Sbjct: 434 SLCESGDLEGALEVHRKTSQFNHVVVDPMQYGVLLESLCKGEKHESAIALLDELL 488
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +++I L + + + + L ++ + V P+ + + +I+ Y R LLE A ++
Sbjct: 253 NVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFEL 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D MS ++ V ++N ++N + GK R + M K +SPD +YNIL+ C
Sbjct: 312 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 371
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + DA ++FDEM + + P LV+F LI L +D+ALK DM + PD
Sbjct: 372 NDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNV 430
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G C G +S AL ++EM+ +D
Sbjct: 431 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 463
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I R + E ++ ++ V+ + + + +++ + ++L A ++F EM
Sbjct: 432 YTILIGGFCRNGVMSEALKVRDEMLEQGCVL-DVVTYNTILNGLCKEKMLSEADELFTEM 490
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V +F TL+N G +++ LF++M ++ + PD +YN L+ G +
Sbjct: 491 TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM 550
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E +++++M+ RR+ P +++G LI G C V EA +L ++M+ + +
Sbjct: 551 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE-KGFEATIITCNT 609
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KG C G A F M+ I D
Sbjct: 610 IVKGYCRAGNAVKADEFLSNMLLKGIVPDG 639
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF---------- 96
F+++L + +I L R++ + Q ++ ++ + V EI+ V+++
Sbjct: 128 FKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVF 187
Query: 97 ------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IME 149
Y +AR L + F + S + ++ + N+LL ++ G +D +++Q ++
Sbjct: 188 DLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVR 247
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
V + + NI+++ ++++E+ +M ++ + P +VT+ TLI C + ++E
Sbjct: 248 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 307
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
A +L D M +KP + ++I GLC G+ A G +EM++
Sbjct: 308 AFELM-DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 352
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 40 EAQPLKP--FRYNLLHYDLIIT-KLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
+ LKP F YN + L T K RAK + DE+ +I + DT ++ C
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI--GMSPDTATYNILLVEC---- 369
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
R + A ++FDEM S V + SF+ L+ + G +D+ F+ M+ ++P
Sbjct: 370 --CRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAP 427
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D Y IL+ G + + +A KV DEML++ +VT+ T++ GLC E + EA +L
Sbjct: 428 DNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELF 487
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M V PD F +LI G G ++ A+ E M++ ++ D
Sbjct: 488 TEMTE-RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD 533
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +++ Y+ +I + ++V ++ + + R+ P I + +I+ Y +
Sbjct: 530 LKP---DVVTYNTLIDGFCKGSEMEKVNELWNDMIS-RRIYPNHISYGILINGYCNMGCV 585
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNIL 162
A +++DEM + T+ + NT++ G + + L ++ K + PD +YN L
Sbjct: 586 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 645
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + ++ A+ + ++M L P ++T+ ++ G + R+ EA + M+
Sbjct: 646 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RG 704
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V PD + SLI G L A +EM++
Sbjct: 705 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 737
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ ++ + V P+ F +I+ Y + + A+ +
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M N++ V ++NTL++ +++++ +L+ M + + P+ SY IL++G
Sbjct: 522 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 581
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVT----------------------------------- 193
+ +A++++DEM+++ + T++T
Sbjct: 582 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 641
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ TLI G E +D A L + M + PD + ++ G G + A
Sbjct: 642 YNTLINGFIKEENMDRAFALV-NKMENSGLLPDVITYNVILNGFSRQGRMQEA 693
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++ + I+ RA + + L + +VP+ I + +I+ + + ++
Sbjct: 598 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG-IVPDGITYNTLINGFIKEENMD 656
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILM 163
A + ++M + + V ++N +LN G++ + +++E+ V+PD +Y L+
Sbjct: 657 RAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 716
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQP 189
+G V L++A++V DEML+R P
Sbjct: 717 NGHVTQNNLKEAFRVHDEMLQRGFVP 742
>gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 629
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 121/255 (47%), Gaps = 26/255 (10%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
+A L+ Q ALQ FK + P T +Q Y +I KL FD V
Sbjct: 41 HIAHLILDQNSATKALQTFKWASNLPKFTHSQST---------YRALIQKLCAFHRFDTV 91
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
Q+L ++ H P+E IF VI GRAR++ H ++V D +S F ++K FN++L+
Sbjct: 92 YQLLDEMPHAIGSPPDEEIFLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILD 151
Query: 131 AMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
++ ID + + Q+M V D ++ ILM G ++ R+ D +++ M R ++
Sbjct: 152 VLVKV-DIDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVK 210
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC---------A 239
P V + TL++ LC +V A L +++ +P+ F LI C
Sbjct: 211 PNAVVYNTLLHALCKNGKVGRARSLMDEIE-----EPNDVTFNVLIAAYCKEENLVQALV 265
Query: 240 VGELSLALGFKEEMV 254
+ E S +LGF ++V
Sbjct: 266 LLEKSFSLGFVPDVV 280
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 93/217 (42%), Gaps = 7/217 (3%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHA 106
+N YD +I L +E +IL ++ I N + YG + + + A
Sbjct: 382 WNFDTYDTLIKGLFFGGRIEEGLKILELMEESKGGSGGRISPYNSV-LYGLYKKNMWDEA 440
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
L+ +M + +S L G + +F Q++ + +P+ Y+ L+HG
Sbjct: 441 LEFLMKMEKLFPRAVDRSLRIL--GFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHG 498
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
L +A+++ +EM+ F LI+G C + + + ALKL +DM+ V P
Sbjct: 499 FCQEGNLREAFELMNEMVGHGYFLVASGFNALIHGFCGQGKDESALKLLDDMVGRGCV-P 557
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D ++ LI LC G AL +M+ I D+
Sbjct: 558 DRGTYSPLIDALCRKGNFQKALSIFNQMIEKGITPDS 594
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+IS + + + + AL +F++M + + +++TL+ + G+I+ + ++ME+
Sbjct: 355 LISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFGGRIEEGLKILELMEESK 414
Query: 153 SPDA---CSYNILMHGC----------------------VVSRRL-----------EDAW 176
YN +++G V R L ++A
Sbjct: 415 GGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDRSLRILGFCEKGAVKNAK 474
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
VFD+M+ P ++ + L++G C E + EA +L +M+ + A F +LI G
Sbjct: 475 MVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVG-HGYFLVASGFNALIHG 533
Query: 237 LCAVGELSLALGFKEEMV 254
C G+ AL ++MV
Sbjct: 534 FCGQGKDESALKLLDDMV 551
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 85/185 (45%), Gaps = 11/185 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L + M+DE + L +++ ++ P + I + +++A VFD+M
Sbjct: 424 YNSVLYGLYKKNMWDEALEFLMKME---KLFPRAVDRSLRILGFCEKGAVKNAKMVFDQM 480
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD----ACSYNILMHGCVVS 169
+ + ++ L++ G + + F++M + V A +N L+HG
Sbjct: 481 INEGGTPNILVYDCLVHGFCQEGN---LREAFELMNEMVGHGYFLVASGFNALIHGFCGQ 537
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ E A K+ D+M+ R P T+ LI LC + +AL + M+ + PD+
Sbjct: 538 GKDESALKLLDDMVGRGCVPDRGTYSPLIDALCRKGNFQKALSIFNQMIE-KGITPDSST 596
Query: 230 FASLI 234
+ SL+
Sbjct: 597 WNSLL 601
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + V+ A + A+++ + + V ++NTLL GKI
Sbjct: 276 VPDVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHR 335
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ ME K P+ +YNIL+ G S + A +F++M + T+ TLI GL
Sbjct: 336 FLKEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLF 395
Query: 203 LELRVDEALKLKEDM 217
R++E LK+ E M
Sbjct: 396 FGGRIEEGLKILELM 410
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + PE +F ++ R L A VFDEM S V+RTV SFNT+++ M G +D
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L + M E V+PD +Y L+ G R+EDA VF++M R ++P V F LI
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILI 228
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C + + L+L + MR V+PDA + +++ GLC +L A G EM
Sbjct: 229 DAHCKKGDAETMLELHRE-MRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEM 282
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R ++ ++ +I+ + RA D + LH+ + V P+ + +I R +E
Sbjct: 145 RGVRRTVVSFNTMISGMCRAGDLDGAET-LHRRMSEAGVTPDVYTYGALIQGLCRVGRIE 203
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A VF++M ++ F L++A G + M +L + M E+ V PDA +YN ++
Sbjct: 204 DARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIV 263
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G +R L+ A + EM L+P VT+ TLI G C E +D A+++K++M+ V
Sbjct: 264 NGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMV-AEGV 322
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI GL G + A EM+ +E D
Sbjct: 323 GLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPD 360
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ + P+A +N+LM V L A VFDEM R ++ T+V+F T+I G+C
Sbjct: 105 LQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRA 164
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+D A L M V PD + +LI+GLC VG + A G E+M ++ +A
Sbjct: 165 GDLDGAETLHRRMSEA-GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 221
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 2/174 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH+ + V P+ + + +++ RAR L+ A + EM S ++ ++ TL++
Sbjct: 243 LHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYC 302
Query: 134 TCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++D ++ Q M + V D +Y L+ G + R DA +V EM++ L+P
Sbjct: 303 KEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNT 362
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
T+ +I C + V L+L ++M KP + ++ G C +G++ A
Sbjct: 363 TYTMVIDAFCRKGDVKTGLRLLKEMQN-KGRKPGVVTYNVIMNGFCKLGQMKNA 415
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 84/189 (44%), Gaps = 6/189 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R + + Y +I + + D +I + + V +E+ + +IS +A A
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG-VGLDEVTYTALISGLSKAGRSADA 345
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
+V EM ++ ++ +++A G + L + M+ K P +YN++M+G
Sbjct: 346 ERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 405
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++++A + + M+ + P +T+ L+ G C +V + +LK V P
Sbjct: 406 FCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAKGTV----P 461
Query: 226 DAQVFASLI 234
D V+ S++
Sbjct: 462 DLGVYTSIV 470
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 15/244 (6%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
LRL KDP AL+ FK K F + Y +++ LGR + + + L
Sbjct: 85 LRLIKDPSKALRFFKWTQQ----------KGFSHTPESYFIMLEILGRERNLNVARNFLF 134
Query: 76 QL-KHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ KH V E+ F ++I Y A L + ++++F M S V +V +FN+L++ +L
Sbjct: 135 SIEKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILL 194
Query: 134 TCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G+ + +++ +++ Y VSPD C+YN+L+ G + +++ ++ F EM +
Sbjct: 195 KRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADV 254
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ TL+ GLC +V A L M + + P+ + +LI+G C E+ AL
Sbjct: 255 VTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVL 314
Query: 251 EEMV 254
EEM
Sbjct: 315 EEMT 318
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M EV ++ V P+ + +I + + +++ + F EM SF
Sbjct: 192 ILLKRGRTNMAKEVYD---EMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESF 248
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
N V ++NTL++ + GK+ +L M K ++P+ +Y L+ G + + +E
Sbjct: 249 NCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVE 308
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A V +EM R L+P ++T+ TL+ GLC ++D+ + E M PD F ++
Sbjct: 309 EALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTI 368
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
I C G L AL E M + +I D+
Sbjct: 369 IHLHCCAGNLDEALKVFESMKKFRIPADS 397
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 13/205 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N++ Y+ ++ L A D+++ +L ++K D P+ F +I + A
Sbjct: 319 SRGLKP---NMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCA 375
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
L+ AL+VF+ M F + S++TL+ ++ G D LF ++ EK +
Sbjct: 376 GNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGS 435
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P A SYN + + + A +V +++KR Q ++ T+I G C E + +
Sbjct: 436 KPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQDP-QSYTTVIMGHCKEGAYESGYE 494
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGL 237
L M+R + PD +++ LI G
Sbjct: 495 LLMWMLR-RDFLPDIEIYDYLIDGF 518
>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
salt-inducible-like protein (GB:AL021637) [Arabidopsis
thaliana]
Length = 991
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 124/239 (51%), Gaps = 15/239 (6%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F+ + +L KH + P IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVL--AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L+ +++ G + + +LF+ + V P+ SYN+LM ++ L A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ML+R + P + ++ LI G C + +V+ A++L +DM+ V PD + +L+ LC
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLC 271
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP+ + +I + R + A+++ D+M + S+ TLLN++ ++
Sbjct: 221 VVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAY 280
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ K +PD YN ++ G R DA KV D+ML P V++ TLI GL
Sbjct: 281 KLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C + DE K E+M+ P V L+KG C+ G++ A E +++N
Sbjct: 341 CDQGMFDEGKKYLEEMIS-KGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKN 394
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 108/211 (51%), Gaps = 4/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ + P+ I + ++S + + L++AL +
Sbjct: 158 NLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRG-LAPDRITYSTLMSGFVKNNRLDNALYL 216
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
DEM S+ VQ +N LL G+ ++ +++ + + SP+ +YN+++ G
Sbjct: 217 LDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLC 276
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++A V++ M+ QP ++T+GT+I+GLC VD A ++ +M++ + PD
Sbjct: 277 KLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKT-GLVPDV 335
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ SL+KG C G + A F + M + I
Sbjct: 336 VIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI 366
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 112/209 (53%), Gaps = 5/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L R+ D ++ ++ T +VP+ +I+ +++ + A + A +
Sbjct: 299 DMITYGTMIHGLCRSTDVDSAARVYSEMIK-TGLVPDVVIYNSLLKGFCHAGRVGEAWKF 357
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCV 167
+D MS + R V S+N +L + G +D+ TDL++++EK +SPD +++ ++HG
Sbjct: 358 WDSMSVSGI-RNVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLC 416
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ ++ +E + ++ ++I GLC + R+D+A+KL E + + + KP++
Sbjct: 417 EKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEK-ISMDSFKPNS 475
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ +LI G C + S A+ +M N
Sbjct: 476 HIYNALINGFCQASKFSDAIRVYSQMAEN 504
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 5/211 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++++ RA M D +L P ++ + RAR A F +S
Sbjct: 89 VVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSH 148
Query: 116 FNVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSR 170
R + +++N +L ++ G +DR LF + + ++PD +Y+ LM G V +
Sbjct: 149 GAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNN 208
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
RL++A + DEM +QP V + L+ G ++A+++ E ++R P+ +
Sbjct: 209 RLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATY 268
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ GLC +G A E MV N + D
Sbjct: 269 NVMLDGLCKLGMFKEAGDVWERMVANNHQPD 299
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 6/211 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L + D+ ++ ++ D+ P I+ +I+ + +A A++V+ +M
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDS-FKPNSHIYNALINGFCQASKFSDAIRVYSQM 501
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK---IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
+ + T ++NTL++ + K R T +++EK D +Y L+ G +
Sbjct: 502 AENDCSPTTITYNTLIHGLCKAEKYLEASRFTR--EMLEKGCMLDVNTYGSLIRGLCRDK 559
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+++ A +++++L + LQ +V LI+GLC +VDEA +L +M N P+ +
Sbjct: 560 KIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTY 619
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+L+ G G A ++ N + D
Sbjct: 620 NTLMDGFYETGCFDKAASLWMAILENGLVPD 650
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 52/259 (20%)
Query: 11 RLASLLRLQKDPKLAL-QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK--MF 67
RL L++ + DP AL L + P T QPL L H ++ +L +
Sbjct: 16 RLLELMKSEPDPATALAHLDLLVSTWPAYTPPQPL------LFH---LLRRLATSSPSRL 66
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ IL +L+H R + V+S + RA + + AL F + SF
Sbjct: 67 PRLLGILPRLRHRPRFSESAALV--VLSAFSRALMPDAALAAFRRLPSF----------- 113
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM----L 183
L C +P S+N L+ V +RR DA F +
Sbjct: 114 -----LGC-----------------NPGVRSHNALLDAFVRARRFSDADAFFASLSHGAF 151
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
RR+ P L T+ ++ LC+ +D A+ L D +R + PD +++L+ G L
Sbjct: 152 GRRIAPNLQTYNIMLRSLCVRGDLDRAVTLF-DSLRCRGLAPDRITYSTLMSGFVKNNRL 210
Query: 244 SLALGFKEEMVRNKIEMDA 262
AL +EM +++ DA
Sbjct: 211 DNALYLLDEMPSYEVQPDA 229
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL---KHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
Y +I L R K D + +Q+ T VV I+ + S A ++ A Q+
Sbjct: 548 YGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCS----AGKVDEASQLL 603
Query: 111 DEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM N V ++NTL++ G D+ L+ I+E + PD SYN + G
Sbjct: 604 SEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCS 663
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
R + ++ +EML + PT +T+ L+
Sbjct: 664 CNRTPEGVQLLNEMLASGIIPTAITWNILV 693
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA + R N + Y+ ++ L + DE ++ ++ + P+++ + ++ +
Sbjct: 251 EAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMV-ERGCDPDKVTYTTLLYGFCN 309
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+E A++VFDEM S V ++N LL GK LFQ+M + PD S
Sbjct: 310 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVS 369
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+NI++ G ++RL+DA +VF+ M + P LVT+ +LI+GLC E R+ EA+K+ +++
Sbjct: 370 HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 429
Query: 218 MRVYNVKPDAQVFASLIKGLCAVG 241
R+ + PD F L++ + A G
Sbjct: 430 DRL-KLSPDPHAFNVLLEAMYAAG 452
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L +AK + I + + VVP+ + + +I + + L A +++ +M
Sbjct: 124 YNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQM 183
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
N V ++N LN ++ G+I +++ M SPD +Y+ L+HG ++R+
Sbjct: 184 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKH 243
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++F+ M+ R +P VT+ L++GLC E + DEA +L M+ PD + +
Sbjct: 244 DQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDKVTYTT 302
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ G C VG++ A+ +EMV + D
Sbjct: 303 LLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I A+ D+ ++ + P + + ++ + + A ++
Sbjct: 226 DVITYSTLIHGFSLARKHDQAHELFEAMI-SRGCRPNAVTYNCLLHGLCKESKPDEAHEL 284
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F +M ++ TLL GKI++ ++F +++ K PD +YN L+ G
Sbjct: 285 FRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFR 344
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + +A ++F M+ R +P V+ +I GL R+D+A+++ E M + + PD
Sbjct: 345 AGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLV 404
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLC LS A+ +E+ R K+ D
Sbjct: 405 TYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 437
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
++++ + G++D L + M ++ PD ++++L++ + ++++A + F + +
Sbjct: 53 HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE-FLQGMN 111
Query: 185 RRLQ---PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
R + + ++ +L+ LC +V +A + M+ +V PD ++ LI G C +
Sbjct: 112 RTISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKID 171
Query: 242 ELSLALGFKEEMV 254
EL A ++M+
Sbjct: 172 ELGRAEKLYKQMI 184
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++I AK D+ ++LH++ +V I + +I + + L AL +
Sbjct: 387 DVITFSILIDGYCGAKRVDDGMKLLHEMSRRG-LVANTITYTTLIHGFCQLGNLNAALDL 445
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S V V + NTLL+ + GK+ ++F++M+K V PD
Sbjct: 446 LQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQ 505
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R L P +T+ ++I GLC + R+DEA ++ D
Sbjct: 506 TYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMF-DS 564
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M PD F +LI G C VG + L EM R I +A
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANA 609
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 120/231 (51%), Gaps = 9/231 (3%)
Query: 39 TEAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN 92
T+AQ L K NL Y+ +I + + E Q++L ++ + ++ P+ + F
Sbjct: 265 TDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREM-FERKMSPDVVTFSV 323
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KY 151
+I+ + A ++++EM + ++N++++ ++D +F +M K
Sbjct: 324 LINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKG 383
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
SPD +++IL+ G ++R++D K+ EM +R L +T+ TLI+G C ++ AL
Sbjct: 384 CSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAAL 443
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L ++M+ V P+ +L+ GLC G+L AL + M ++K+++DA
Sbjct: 444 DLLQEMIS-SGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDA 493
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
LH+ K + R +P CN+ SF + L AL F +++ ++ +F+T
Sbjct: 98 LHR-KMEMRRIP-----CNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFST 151
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
LL+ + DR+++ + P+ ++ LM+G R+ +A + D M++ L
Sbjct: 152 LLHGLCV---EDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGL 208
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
QP +T+GT++ G+C AL L M V +KP+ +++++I GL G + A
Sbjct: 209 QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQ 268
Query: 248 GFKEEMVRNKIE 259
EM I
Sbjct: 269 NLFSEMQEKGIS 280
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
I+ C +I+ G+ A ++++EM + ++N++++ + ++D T +F
Sbjct: 509 ILICGLIN-EGK---FSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDS 564
Query: 148 M-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M K SPD ++ L++G R+ D +VF EM +R + +T+ TLI+G C
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGN 624
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++ AL + ++M+ V PD +++ GL + EL A+
Sbjct: 625 INGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAV 664
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + L+ A+ +F M V F LL ++ + D + L + ME + +
Sbjct: 49 SGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIP 108
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ S+ IL+ +L A F ++ K P+LVTF TL++GLC+E RV EAL
Sbjct: 109 CNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHF 168
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ KP+ F +L+ GLC G + A+ + MV + ++
Sbjct: 169 FHQI-----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 209
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 7/198 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q KP N++ + ++ L R E +L ++ D + P +I + ++ +
Sbjct: 171 QICKP---NVIAFTTLMNGLCREGRVVEAVALLDRMVEDG-LQPNQITYGTIVDGMCKMG 226
Query: 102 LLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSY 159
AL + +M + ++ V ++ +++ + G+ +LF M EK +SP+ +Y
Sbjct: 227 DTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTY 286
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N +++G S R +A ++ EM +R++ P +VTF LI L E + EA +L +M+
Sbjct: 287 NCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLP 346
Query: 220 VYNVKPDAQVFASLIKGL 237
+ P+ + S+I G
Sbjct: 347 -RGIIPNTITYNSMIDGF 363
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P + + + Y+ +I L + DE Q+ + P+ + F +I+ Y +
Sbjct: 528 EEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKG-FSPDVVTFTTLINGYCK 586
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
+ L+VF EM + ++ TL++ G I+ D+FQ ++ V PD +
Sbjct: 587 VGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTIT 646
Query: 159 YNILMHG 165
++ G
Sbjct: 647 IRNMLTG 653
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 15/227 (6%)
Query: 23 KLALQLFKN--PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
K+AL+L KN + +P +P N + Y +II L + DE +++ ++K
Sbjct: 459 KIALELHKNMLSDTSPYGINCKP------NAISYSIIIDGLCKCGREDEARELFKEMKA- 511
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
V+P+ I + ++I + R+ + A +F+EM VQ V +F+ L++ + GK+
Sbjct: 512 LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIE 571
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+L ++M ++ P+ +Y L+ G ++ R+ +A ++F +M K P +VT+GTL+
Sbjct: 572 ANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 631
Query: 200 GLCLELRVDEALKLKEDMMR-----VYNVKPDAQVFASLIKGLCAVG 241
GLC + AL+L + M+ N KPD ++ +I GLC G
Sbjct: 632 GLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHG 678
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 110/208 (52%), Gaps = 8/208 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+T +K + L+ Y +II L + + DE +++ ++K ++P+ I + ++I
Sbjct: 108 NDTSQYGIK-CKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQG-MMPDVISYTSLIHG 165
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ R+ E A +F+EM ++ V + + L++ + GK+ +L ++M ++ D
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y+ L+ G + R+ +A ++F M K +P + +GTL+ GLC ++ AL+L +
Sbjct: 226 IVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQ 285
Query: 216 DMMR---VYNV--KPDAQVFASLIKGLC 238
+M+ Y + KP ++ +I GLC
Sbjct: 286 EMLNDTGRYGIKCKPTLISYSIIIDGLC 313
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLE 173
N + S++ +++ + CG+ D +LF+ M+ V PD SY L+HG S + +
Sbjct: 476 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 535
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA +F+EM+ +QP + TF LI LC E +V EA +L E M++ + P+ + +L
Sbjct: 536 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCI-PNTVTYTTL 594
Query: 234 IKGLCAVGELSLA 246
+KGLC +S A
Sbjct: 595 VKGLCMNDRISEA 607
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-----RVVPEEIIFCNVISFYGRARL 102
R + + Y ++ L + + Q+ ++ +DT + P I + +I + R
Sbjct: 258 RPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 317
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
+ A ++F EM + + V S+ TL++ GK ++ LF ++++ + PD + ++
Sbjct: 318 EDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 377
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ ++ +A K+ + +++R P +VT TL+ GLC++ R+ +A +L M ++
Sbjct: 378 LIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKL- 436
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P+ A+L+KGLC G + +AL + M+ +
Sbjct: 437 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSD 471
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 42/254 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L+ Y +II L + + DE +++ ++K ++P+ I + +I + + E A +
Sbjct: 301 TLISYSIIIDGLCKDRREDEARELFKEMKAQG-IMPDVISYTTLIHGFCLSGKWEKAKCL 359
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVV 168
F+EM +Q V + + L++ + GK+ L ++ +++ PD + L+ G +
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCM 419
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM----------- 217
R+ A ++F +M K P +VT TL+ GLC + AL+L ++M
Sbjct: 420 KHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINC 479
Query: 218 -----------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
M+ V PD + SLI G C G+ A
Sbjct: 480 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 539
Query: 249 FKEEMVRNKIEMDA 262
EMV ++ D
Sbjct: 540 LFNEMVDIGVQPDV 553
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 12/163 (7%)
Query: 111 DEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+E+ VQR + +++TL+ + +I T LF M+K PDA +Y LM G
Sbjct: 30 NELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKG 89
Query: 166 CVVSRRLEDAWKVFDEMLKR------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ ++ A + EML + +PTLV++ +I GLC + R DEA +L ++ M+
Sbjct: 90 LCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKE-MK 148
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD + SLI G C G+ A EM+ I D
Sbjct: 149 AQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDV 191
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ PD + +L+ ++ +A ++ + M++R +VT+ TLI GLC++ R+ EA
Sbjct: 6 IQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+L M ++ +PDA + +L+KGLC G++++AL +EM+ +
Sbjct: 66 QLFMSMKKL-GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLND 109
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L E Q+ +++ +P+ + + ++ + ++ AL++
Sbjct: 587 NTVTYTTLVKGLCMNDRISEATQLFMKMQK-LGCLPDVVTYGTLMKGLCQTGNIKTALEL 645
Query: 110 FDEMSS------FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+M S N + V S++ +++ + G+ D +LF+ M+ V P+ SY L
Sbjct: 646 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 705
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+HG S +LEDA +F+EM+ + +Q VT+ +I+G C E ++D+AL
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + ++ + A Q+F +M V ++ TL+ + G I +
Sbjct: 585 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 644
Query: 144 LFQIM----EKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
L + M +Y + PD SY+I++ G R ++A ++F EM + P ++++ +
Sbjct: 645 LHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTS 704
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
LI+G C ++++A L +M+ V+ +A ++ +I G C G++ AL
Sbjct: 705 LIHGFCRSGKLEDAKHLFNEMVD-QGVQLNAVTYSVMIHGFCKEGQIDKAL 754
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------PD 155
+ A Q+F M + ++ TL+ + GKI+ L Q M S P
Sbjct: 61 ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
SY+I++ G RR ++A ++F EM + + P ++++ +LI+G C + ++A L
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M+ V ++ D + LI LC G++ A E M++ +D
Sbjct: 181 EMLDV-GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
M +Q V + L++ GK+ +L ++M ++ D +Y+ L+ G + R
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM---RVYNV--KPD 226
+ +A ++F M K +P + +GTL+ GLC +++ AL L ++M+ Y + KP
Sbjct: 61 ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120
Query: 227 AQVFASLIKGLC 238
++ +I GLC
Sbjct: 121 LVSYSIIIDGLC 132
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 1/194 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L R ++L +L+ D +P + F +VIS Y +A LE A+ V+++M
Sbjct: 289 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 348
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + ++N L+N G + +++Q M + PD +++ L+ G +L
Sbjct: 349 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 408
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA +++ +M + R+QP + TF +I+ LC + R DEA+ L ++ ++ P A ++
Sbjct: 409 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNP 468
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 469 VIDVLCKCGKVDEA 482
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L LI GR ++ D V + + D P+ F VI R +
Sbjct: 213 VEAYAYNKLMSSLI----GRGRVHD-VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQV 267
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N L++ + ++ R ++ + +++ P+ ++
Sbjct: 268 QKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTS 327
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +LEDA V+++M+ + P VT+ LI G + A+++ + M R+
Sbjct: 328 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL- 386
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD F+SLI G C G+L AL +M +++I+
Sbjct: 387 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 424
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II L R+ + Q+ Q+ P+ ++S A LL+ + + + S F
Sbjct: 150 IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEF 209
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLED 174
+ ++N L+++++ G++ + LF+ I ++ SPD S+N+++ G +++
Sbjct: 210 GCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQK 269
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ + M + P VT L+ GLC V ++ + R P+ F S+I
Sbjct: 270 ALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVI 329
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
G C G+L A+ +MV + I
Sbjct: 330 SGYCKAGKLEDAMAVYNDMVASGI 353
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ A + P N + Y+++I G+ ++ Q+ R P+ + F ++I
Sbjct: 346 NDMVASGIMP---NTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDG 401
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSP 154
Y R L+ AL+++ +M+ +Q V +F+ +++++ + D L + ++P
Sbjct: 402 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAP 461
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
A YN ++ ++++A + M ++ +P T+ LI G C++ R+ EA+
Sbjct: 462 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFF 521
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVG 241
+M+ PD+ I L G
Sbjct: 522 HEMVEA-GCSPDSITVNCFISCLLKAG 547
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 128/248 (51%), Gaps = 14/248 (5%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S SL++ ++DP+ AL +F +A K F +N Y +++ L
Sbjct: 51 KTKFISHESTVSLMKRERDPQRALDIF---------NKASQQKGFNHNNATYSVLLDNLV 101
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRT 121
R K F V ILHQ+K++T +E +F N++ + R L + +++F+ + V+ +
Sbjct: 102 RHKKFLAVDAILHQMKYET-CRFQESLFLNLMRHFSRFDLHDKVMEMFNLIQVIARVKPS 160
Query: 122 VKSFNTLLNAMLTCGKID--RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
+ + +T LN ++ G++D R L+ + P+ C +NIL+ + ++ A++V
Sbjct: 161 LNAISTCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVV 220
Query: 180 DEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+EM + + P +T+ TL+ L + R EA++L EDM+ + PD +F +I G C
Sbjct: 221 EEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFC 280
Query: 239 AVGELSLA 246
GE+ A
Sbjct: 281 RSGEVERA 288
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 101/199 (50%), Gaps = 6/199 (3%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM--SSFNVQRTVKSF 125
D +++L KH+ + P IF ++ + + ++ A +V +EM S + ++ ++
Sbjct: 178 DLARKLLLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSI-TY 236
Query: 126 NTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+TL++ + + +LF+ I ++ +SPD +N++++G S +E A + D M
Sbjct: 237 STLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMK 296
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K P + + L+ G C E ++ EA ++ +++ + +K D + +L+ LC GE+
Sbjct: 297 KNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKT-GLKLDTVGYTTLMNCLCRNGEI 355
Query: 244 SLALGFKEEMVRNKIEMDA 262
A+ EM ++ DA
Sbjct: 356 DEAMKLLGEMKASRCRADA 374
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS-FYGRARLLEHALQ 108
N +++++ + D +++ ++K P I + ++ + ++R E A++
Sbjct: 196 NTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKE-AVE 254
Query: 109 VFDEMSSFNVQRTVKS----FNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
+F++M S +R + FN ++N G+++R + M+K +P+ +Y+ LM
Sbjct: 255 LFEDMIS---KRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALM 311
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G ++++A +VFDE+ K L+ V + TL+ LC +DEA+KL + M+
Sbjct: 312 NGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGE-MKASRC 370
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
+ DA + +++GL + G AL
Sbjct: 371 RADALTYNVILRGLSSEGRSEEAL 394
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 2/210 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L E ++ + + P+ +IF +I+ + R+ +E A +
Sbjct: 232 NSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMI 291
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M V +++ L+N GKI +F ++ + + D Y LM+
Sbjct: 292 LDFMKKNGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCR 351
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++A K+ EM R + +T+ ++ GL E R +EAL++ D V +
Sbjct: 352 NGEIDEAMKLLGEMKASRCRADALTYNVILRGLSSEGRSEEALQML-DQWGCEGVHLNKG 410
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ LC GEL A+ F M + I
Sbjct: 411 SYRIILNALCCNGELEKAVKFLSVMSKRGI 440
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ L+R +KD + ++ +F + N F Y ++++L
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSIAVFDSATAEYANGYLHDQSSFGY-------MVSRLVS 63
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F + I+ ++K + VV E+I+ ++ YGR +L+VF +M F+ + K
Sbjct: 64 ANKFKAAEDIVARMKIENCVVSEDILL-SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK 122
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
++ T+L ++ +++ ++ M E + P S N+L+ C ++ K+F E
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHE 182
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M KR P T+GTLI GLC R+DEA KL +M+ + P + SLI GLC
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSK 241
Query: 242 ELSLALGFKEEMVRNKIE 259
+ A+ + EEM IE
Sbjct: 242 NVDEAMRYVEEMKGKGIE 259
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 93/175 (53%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +IS R ++ A ++F EM + TV ++ +L+N + +D
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M+ K + P+ +Y+ LM G R A ++F+ M+ R +P +VT+ TLI GLC
Sbjct: 250 VEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
E ++ EA++L D M + +KPDA ++ +I G CAV + A F +EM+ I
Sbjct: 310 EQKIQEAVELL-DRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGI 363
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ L++F EM ++ TL++ + G+ID LF +++EK +P +Y
Sbjct: 173 VDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G S+ +++A + +EM + ++P + T+ +L+ GLC + R +A++L E MM
Sbjct: 233 LINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFE-MMMAR 291
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+P+ + +LI GLC ++ A+ + M ++ DA
Sbjct: 292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/244 (18%), Positives = 105/244 (43%), Gaps = 42/244 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L R DE +++ ++ + P + + ++I+ ++ ++ A++ +EM
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMV-EKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEM 253
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ V ++++L++ + G+ + +LF++M + P+ +Y L+ G +++
Sbjct: 254 KGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------------- 217
++A ++ D M + L+P +G +I G C + EA ++M
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 218 -------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
MR + + + SL+K LC GE A+ +E
Sbjct: 374 VKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDE 433
Query: 253 MVRN 256
+V +
Sbjct: 434 IVTD 437
>gi|356524760|ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 381
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYG 98
+A + FR Y+ + +L A+ F ++ IL HQ ++ + E +IS YG
Sbjct: 47 KASDIDRFRKKTGIYEDTVRRLAGARRFRWIRDILEHQKQYSD--ISNEGFSARLISLYG 104
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDA 156
++ + +HA +VFDEM N RTV S N LL A L K D + +LF+ + +S PD
Sbjct: 105 KSGMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSRKYDIVGELFRDLPTQLSIKPDL 164
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ + A VF E+ ++ L P +TF TL+ GL + R +E K+ E
Sbjct: 165 VTYNTIIKAFCEKGSFDSALSVFQEIEEKGLSPDSITFNTLLDGLYSKGRFEEGEKVWE- 223
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M V NV P + + S + GL V ++ A+ EM + ++ D
Sbjct: 224 QMGVKNVAPGVRSYCSKLVGLAEVKKMGEAVVLFREMEKLGVKPD 268
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A KVFDEM +R T+++ L+ + D +L D+ ++KPD + ++I
Sbjct: 112 ARKVFDEMPQRNCSRTVLSLNALLAAYLHSRKYDIVGELFRDLPTQLSIKPDLVTYNTII 171
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMDA 262
K C G AL +E+ + D+
Sbjct: 172 KAFCEKGSFDSALSVFQEIEEKGLSPDS 199
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P + + +I + ++ ALQ+ +M + +++T+++ +L G++ D +
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 300
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q+ + PDA +YN L+ G +RL +A + EML+ P++VT+ TL +GLC
Sbjct: 301 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 360
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R DEA+++ D M P+A ++S++ GLC G ++ ALG+ E+M R+++
Sbjct: 361 SGRFDEAVEIL-DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 414
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 2/212 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N++ Y +I L + DE Q+L ++ + + + V+ + +E
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-ELGCRANTVTYSTVVDGLLKVGRME 295
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ V +M ++NTL++ ++ L +++E P +Y L
Sbjct: 296 DAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLC 355
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG S R ++A ++ D M R P +T+ +++ GLC RV EAL E M R V
Sbjct: 356 HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVV 415
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
P +++LI GLC G++ A F E M+R
Sbjct: 416 APHVIAYSALIDGLCKAGKIDEAYEFLERMIR 447
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 4/199 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I L +++ D+ + Q+ D + P+ + + +I G+ R ++ A +F+E +
Sbjct: 1 MIDGLCKSRKVDKAITLFKQMV-DKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAK 59
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLED 174
TV ++NT+++ + CG+I+ L+ M + P +Y+ L+ G ++
Sbjct: 60 GCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDK 119
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
K+ +EM R P VT+ TL+ L + R EA L E M P+ F +I
Sbjct: 120 GCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMA-ANGCPPELITFGLII 178
Query: 235 KGLCAVGELSLALGFKEEM 253
KGLC GE+ A +EM
Sbjct: 179 KGLCKEGEIEAAFRVVDEM 197
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 102/203 (50%), Gaps = 6/203 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHA 106
R N + Y ++ L + ++ +L Q++ D +P+ + + +I F+ R RL E A
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMR-DAGCLPDAVTYNTLIDGFFKRQRLRE-A 332
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
+ + EM +V ++ TL + + G+ D ++ M + +P+A +Y+ ++ G
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 392
Query: 166 CVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ R+ +A F++M + + P ++ + LI GLC ++DEA + E M+R +
Sbjct: 393 LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI- 451
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
PD F+ LI GLC G + L
Sbjct: 452 PDVVTFSILINGLCDAGRIDTGL 474
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y + L R+ FDE +IL + P I + +++ +A + A
Sbjct: 344 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG-CAPNAITYSSIVDGLCKAGRVTEA 402
Query: 107 LQVFDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNI 161
L F++M+ V V +++ L++ + GKID + ++ +E+ + PD +++I
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKID---EAYEFLERMIRAGRIPDVVTFSI 459
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G + R++ ++F M +R P +VT+ TL+ LC RVDEA L + MR
Sbjct: 460 LINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQ-QMRSD 518
Query: 222 NVKPDAQVFASLIKGL 237
+ PD ++I GL
Sbjct: 519 GLSPDRSTRRTMIHGL 534
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 105/205 (51%), Gaps = 7/205 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEH 105
FR ++ Y +I L R D+ ++L ++ P + + ++ + G+ R E
Sbjct: 97 FRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRG-CAPNAVTYNTLVNALLGQGRSKE- 154
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNIL 162
A + ++M++ + +F ++ + G+I+ R+ D ++E +SPD ++N +
Sbjct: 155 AFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSV 214
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G +R+ DA VF L+R +P +VT+ TLI GL ++DEAL+L M+ +
Sbjct: 215 LDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL-G 273
Query: 223 VKPDAQVFASLIKGLCAVGELSLAL 247
+ + +++++ GL VG + A+
Sbjct: 274 CRANTVTYSTVVDGLLKVGRMEDAV 298
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDAC 157
++R ++ A+ +F +M + V ++ L++ + ++ DLF+ K P
Sbjct: 7 KSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVV 66
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ G R+E+A ++D+M + +PT+VT+ TLI GLC + VD+ KL E+
Sbjct: 67 TYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEE 126
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M P+A + +L+ L G A E+M N
Sbjct: 127 MAG-RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAAN 165
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y I+ L +A E ++ D V P I + +I +A ++ A +
Sbjct: 382 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEF 441
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ M V +F+ L+N + G+ID +LF+ M E+ PD +Y L+
Sbjct: 442 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCR 501
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ R+++A+ +F +M L P T T+I+GL LE+ DE K +D
Sbjct: 502 ASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGL-LEVNRDEDAKRIQD 548
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +A DE + L ++ R+ P+ + F +I+ A ++ L++
Sbjct: 418 HVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLEL 476
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F M+ + ++ TL++ + ++D DLFQ M +SPD + ++HG +
Sbjct: 477 FRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLE 536
Query: 169 SRRLEDAWKVFDE 181
R EDA ++ DE
Sbjct: 537 VNRDEDAKRIQDE 549
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 38/248 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTL----------------LNAMLT---------------- 134
+++F +M V+RT+KS++ L N ML+
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNFMIWG 159
Query: 135 ---CGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK+D F+ M+ + + PD +YN +++G +++E+ F EM R ++PT
Sbjct: 160 FFLSGKVDTANRFFEXMKSREIMPDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPT 219
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ TLI G R+D+AL+L E+ M+ + + P+A +++L+ GLC ++S A
Sbjct: 220 VVTYTTLIKGYVSVDRIDDALRLVEE-MKGFGINPNAITYSTLLPGLCNAEKMSEAQSIL 278
Query: 251 EEMVRNKI 258
+EMV I
Sbjct: 279 KEMVDKYI 286
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A + F+ M S + V ++NT++N K++ + F M+ + + P +Y
Sbjct: 166 VDTANRFFEXMKSREIMPDVITYNTMINGYYRVKKMEEXENYFMEMKGRNIEPTVVTYTT 225
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G V R++DA ++ +EM + P +T+ TL+ GLC ++ EA + ++M+ Y
Sbjct: 226 LIKGYVSVDRIDDALRLVEEMKGFGINPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKY 285
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F LI G C VG L A + M+R + +A
Sbjct: 286 IAPKDNSIFLRLISGQCKVGNLDAAADVLKVMIRLSVPTEA 326
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 111/224 (49%), Gaps = 7/224 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N ++ ++P R+ ++ +I + D + +K ++P+ I + +I+
Sbjct: 139 NKMLSEGIEPTRHT---FNFMIWGFFLSGKVDTANRFFEXMK-SREIMPDVITYNTMING 194
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
Y R + +E F EM N++ TV ++ TL+ ++ +ID L + M+ + ++P+
Sbjct: 195 YYRVKKMEEXENYFMEMKGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEEMKGFGINPN 254
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYGLCLELRVDEALKLK 214
A +Y+ L+ G + ++ +A + EM+ + + P + F LI G C +D A +
Sbjct: 255 AITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPKDNSIFLRLISGQCKVGNLDAAADVL 314
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ M+R+ +V +A + LI+ C G+ A+ F ++++ I
Sbjct: 315 KVMIRL-SVPTEAGHYGVLIENCCKAGQYDRAVKFLDKVIEKDI 357
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + +I + ++ ++FDE ++ + +N L+N+ T G IDR ++
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 751
Query: 148 MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
MEK ++PD +YN LM G + R+++A K+ DEM +R +QP LVT+ TLI G ++
Sbjct: 752 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 811
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V +AL+++ +MM P + +LI+GLC G+ A +EMV N I D
Sbjct: 812 VKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 865
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +I+ + DE ++ ++ V PE +++ +I Y L+ AL
Sbjct: 549 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 608
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHG 165
D M V TV ++N L++A+ G R T+ ++++E K ++PD +YNIL++G
Sbjct: 609 RDRMVERGVAMTVATYNLLVHALFMDG---RGTEAYELVEEMGGKGLAPDVFTYNILING 665
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ A ++F+ M +R ++ T+VT+ LIY L + +V E KL ++ +R ++P
Sbjct: 666 HCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RGIRP 724
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D ++ +LI G + A EM + +I D
Sbjct: 725 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 760
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F +M + +FN +L + + GK R +L + M + P+A +YN ++ G
Sbjct: 467 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 523
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A + EM +R + P T+GT+I G C RVDEA+K+ ++M+ VK
Sbjct: 524 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 583
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P+A ++ +LI G C G+L AL +++ MV + M
Sbjct: 584 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 619
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDT 81
K AL++F+N + R ++ Y +I L + E ++ + ++
Sbjct: 673 KKALEIFEN----------MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 722
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R P+ +++ +I+ + + ++ A ++ EM + ++NTL+ + G++D
Sbjct: 723 R--PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 780
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L ++ E+ + PD +YN L+ G + ++DA ++ +EM+ + PTL+T+ LI G
Sbjct: 781 RKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQG 840
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
LC + D+A + ++M+ + PD + SLI+GL E ++
Sbjct: 841 LCKNGQGDDAENMVKEMVE-NGITPDDSTYISLIEGLTTEDERAI 884
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 7/218 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I I+ +++ + P + + VIS + + ++ A+
Sbjct: 511 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 570
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILM 163
+VFDEM + V+ +N L+ GK+D T L +++E+ V+ +YN+L+
Sbjct: 571 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--TALLYRDRMVERGVAMTVATYNLLV 628
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H + R +A+++ +EM + L P + T+ LI G C E V +AL++ E+M R V
Sbjct: 629 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR-RGV 687
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +LI L G++ +E VR I D
Sbjct: 688 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPD 725
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 15/227 (6%)
Query: 23 KLALQLFKN--PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
K+AL+L KN + +P +P N + Y +II L + DE +++ ++K
Sbjct: 615 KIALELHKNMLSDTSPYGINCKP------NAISYSIIIDGLCKCGREDEARELFKEMKA- 667
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
V+P+ I + ++I + R+ + A +F+EM VQ V +F+ L++ + GK+
Sbjct: 668 LGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIE 727
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+L ++M ++ P+ +Y L+ G ++ R+ +A ++F +M K P +VT+GTL+
Sbjct: 728 ANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMK 787
Query: 200 GLCLELRVDEALKLKEDMMR-----VYNVKPDAQVFASLIKGLCAVG 241
GLC + AL+L + M+ N KPD ++ +I GLC G
Sbjct: 788 GLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHG 834
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 12/245 (4%)
Query: 24 LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83
+ALQL + N KP L+ Y +II L + + DE +++ ++K +
Sbjct: 142 IALQLHQEM-LNDTGRYGIKCKP---TLISYSIIIDGLCKDRREDEARELFKEMKAQG-M 196
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ I + ++I + + E A +F+EM +Q V + L++ GK+ +
Sbjct: 197 MPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANE 256
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++M + D +Y+ L+ G + R+ +A ++F M K +P + +GTL+ GLC
Sbjct: 257 LLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLC 316
Query: 203 LELRVDEALKLKEDMMR------VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+++ AL L ++M+ + ++PD + LI LC G++ A E M++
Sbjct: 317 QTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQR 376
Query: 257 KIEMD 261
+D
Sbjct: 377 GCILD 381
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 9/162 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI--------DRMTDLFQIMEKYVSP 154
+ A Q+F M + ++ TL+ + GKI + + D Q K + P
Sbjct: 286 ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRP 345
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D + ++L+ ++ +A ++ + M++R +VT+ TLI GLC+E R+ EA L
Sbjct: 346 DVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLF 405
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M ++ +PDA + +L+KGLC G +++AL +EM+ +
Sbjct: 406 MSMQKL-GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLND 446
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEM------SSFNVQRTVKSFNTLLNAMLTCGKI 138
P+ I + ++ + + ALQ+ EM + T+ S++ +++ + +
Sbjct: 122 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 181
Query: 139 DRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-------- 189
D +LF+ M+ + + PD SY L+HG S + E A +F+EML +QP
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241
Query: 190 ---------------------------TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+VT+ TLI GLC++ R+ EA +L M ++
Sbjct: 242 IDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL-G 300
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+PDA + +L+KGLC G++++AL +EM+ +
Sbjct: 301 CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLND 334
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-----RVVPEEIIFCNVISFYGRARL 102
R + + Y ++ L + + Q+ ++ +DT + P I + +I + R
Sbjct: 414 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 473
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
+ A ++F+EM + + V S+ TL++ GK ++ LF ++++ + PD + ++
Sbjct: 474 EDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 533
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ ++ +A K+ + +++R +VT TL+ GLC++ R+ +A +L M ++
Sbjct: 534 LIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKL- 592
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P+ A+L+KGLC G + +AL + M+ +
Sbjct: 593 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSD 627
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 124 SFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNI---------LMHGCVVSRRLE 173
+FN L+N + +++ + + IM + PD +Y+I L+ ++
Sbjct: 12 TFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKEGKVI 71
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A ++ + M++R +VT+ TLI GLC+E R+ EA L M ++ +PDA + +L
Sbjct: 72 EANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKL-GCRPDAITYGTL 130
Query: 234 IKGLCAVGELSLALGFKEEMVRN 256
+KGLC G +++AL +EM+ +
Sbjct: 131 MKGLCQTGNINIALQLHQEMLND 153
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 46/280 (16%)
Query: 24 LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83
+ALQL + N KP L+ Y +II L + + DE +++ ++K +
Sbjct: 435 IALQLHQEM-LNDTGRYGIKCKP---TLISYSIIIDGLCKDRREDEARELFEEMKAQG-I 489
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ I + +I + + E A +F+EM +Q V + + L++ + GK+
Sbjct: 490 MPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANK 549
Query: 144 LFQI-MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++ +++ D + L+ G + R+ A ++F +M K P +VT TL+ GLC
Sbjct: 550 LLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLC 609
Query: 203 LELRVDEALKLKEDM----------------------------------------MRVYN 222
+ AL+L ++M M+
Sbjct: 610 QSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALG 669
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V PD + SLI G C G+ A EMV ++ D
Sbjct: 670 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDV 709
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L E Q+ +++ +P+ + + ++ + ++ AL++
Sbjct: 743 NTVTYTTLVKGLCMNDRISEATQLFMKMQK-LGCLPDVVTYGTLMKGLCQTGNIKTALEL 801
Query: 110 FDEMSS------FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+M S N + V S++ +++ + G+ D +LF+ M+ V P+ SY L
Sbjct: 802 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 861
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+HG S +LEDA +F+EM+ + +Q VT+ +I+G C E ++D+AL
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 99/214 (46%), Gaps = 9/214 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+T +K R ++ ++I L + E ++L + ++ + + + +I
Sbjct: 333 NDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCIL-DIVTYSTLIKG 391
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKY- 151
+ A +F M + ++ TL+ + G I+ L Q M +Y
Sbjct: 392 LCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYG 451
Query: 152 --VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
P SY+I++ G RR ++A ++F+EM + + P ++++ TLI+G CL + ++
Sbjct: 452 IKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEK 511
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
A L +M+ V ++PD + LI LC G++
Sbjct: 512 AKCLFNEMLDV-GIQPDVTTSSVLIDMLCKKGKV 544
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + ++ + A Q+F +M V ++ TL+ + G I +
Sbjct: 741 IPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALE 800
Query: 144 LFQIM----EKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
L + M +Y + PD SY+I++ G R ++A ++F EM + P ++++ +
Sbjct: 801 LHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTS 860
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
LI+G C ++++A L +M+ V+ +A ++ +I G C G++ AL
Sbjct: 861 LIHGFCRSGKLEDAKHLFNEMVD-QGVQLNAVTYSVMIHGFCKEGQIDKAL 910
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 73/133 (54%), Gaps = 6/133 (4%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
++ +++++ V + + L++ + GK+ +L ++M ++ D +Y+ L+ G +
Sbjct: 44 DIVTYSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEH 103
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---VYNV--KP 225
R+ +A +F M K +P +T+GTL+ GLC ++ AL+L ++M+ Y + KP
Sbjct: 104 RISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKP 163
Query: 226 DAQVFASLIKGLC 238
++ +I GLC
Sbjct: 164 TLISYSIIIDGLC 176
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y ++ L A+ +D+V+ + ++ D + VP E+ F ++ F+ R ++E A
Sbjct: 253 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 311
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+QV +MS N ++NA+ G++D D M Y +PD SY ++ G
Sbjct: 312 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 371
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R E A ++ EM+++ P VTF T I LC + +++A+KL E +M Y
Sbjct: 372 LCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE-LMPEYGCSV 430
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ +L+ G C G + AL
Sbjct: 431 GIVTYNALVHGFCVQGRVDSAL 452
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 37/207 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + ++ ++ A+ V DEM + + ++N ++N M G++D ++
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEI 244
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------ 197
+ Y PD SY ++ G +RR +D +F EM+ ++ P VTF L
Sbjct: 245 LNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCR 304
Query: 198 -----------------------------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
I +C + RVD+A + M +Y PD
Sbjct: 305 GGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN-MGMYGCNPDTI 363
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
+ ++++GLC G A EMVR
Sbjct: 364 SYTTVLRGLCRAGRWEHAKELLPEMVR 390
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++++ P +Y +L+ S +A V DEM + P +VT+ +I G+C E R
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237
Query: 207 VDEALKLKEDMMRV--YNVKPDAQVFASLIKGLCAV 240
VD+A KE + R+ Y +PD + +++KGLCA
Sbjct: 238 VDDA---KEILNRLSSYGFQPDIVSYTTVLKGLCAA 270
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 93/220 (42%), Gaps = 39/220 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA ++ +++L ++ P E+ F I + L+E A+++
Sbjct: 361 DTISYTTVLRGLCRAGRWEHAKELLPEMVRK-NCPPNEVTFNTFICILCQKGLIEQAIKL 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ M + + ++N L++ G++D +LF + P+ +Y L+ G +
Sbjct: 420 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP--CEPNTITYTTLLTGLCHA 477
Query: 170 RRL-----------------------------------EDAWKVFDEMLKRRLQPTLVTF 194
RL E+A ++ ++M++ P L+TF
Sbjct: 478 ERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITF 537
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
TL+ G+ + +EAL+L ++ V D ++S++
Sbjct: 538 NTLLDGITKDCNSEEALELLHGLVS-KGVSLDTITYSSVV 576
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 117 NVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
Q +V ++ LL A+ + G + M L ++ K +P+ +YN++++G R++DA
Sbjct: 182 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 241
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++ + + QP +V++ T++ GLC R D+ L +M+ V P+ F L++
Sbjct: 242 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV-PNEVTFDMLVR 300
Query: 236 GLCAVGELSLALGFKEEMVRN 256
C G + A+ ++M ++
Sbjct: 301 FFCRGGMVERAIQVLQQMSQH 321
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +++ A L+ A ++ EM + +FN L++ G ++ +L
Sbjct: 462 PNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMEL 521
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q+ME +P+ ++N L+ G E+A ++ ++ + + +T+ +++ L
Sbjct: 522 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSR 581
Query: 204 ELRVDEALKL---KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E R +EA+++ +DM ++P ++ ++ LC E A+ F MV N
Sbjct: 582 EDRTEEAIQMLHAVQDM----GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSN 633
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 106/198 (53%), Gaps = 1/198 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + +++++ L R ++L +L+ D +P + F +VIS Y +A LE A+ V
Sbjct: 116 DTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAV 175
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+++M + + ++N L+N G + +++Q M + PD +++ L+ G
Sbjct: 176 YNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCR 235
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L+DA +++ +M + R+QP + TF +I+ LC + R DEA+ L ++ ++ P A
Sbjct: 236 CGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAF 295
Query: 229 VFASLIKGLCAVGELSLA 246
++ +I LC G++ A
Sbjct: 296 IYNPVIDVLCKCGKVDEA 313
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L LI GR ++ D V + + D P+ F VI R +
Sbjct: 44 VEAYAYNKLMSSLI----GRGRVHD-VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQV 98
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N L++ + ++ R ++ + +++ P+ ++
Sbjct: 99 QKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTS 158
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +LEDA V+++M+ + P VT+ LI G + A+++ + M R+
Sbjct: 159 VISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRL- 217
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD F+SLI G C G+L AL +M +++I+
Sbjct: 218 RCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQ 255
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDAC 157
A LL+ + + + S F + ++N L+++++ G++ + LF+ I ++ SPD
Sbjct: 24 ANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVW 83
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S+N+++ G +++ A ++ + M + P VT L+ GLC V ++ +
Sbjct: 84 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R P+ F S+I G C G+L A+ +MV + I
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGI 184
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 94/207 (45%), Gaps = 7/207 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ A + P N + Y+++I G+ ++ Q+ R P+ + F ++I
Sbjct: 177 NDMVASGIMP---NTVTYNVLINGYGKVGDLGSAVEVYQQMTR-LRCPPDVVTFSSLIDG 232
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSP 154
Y R L+ AL+++ +M+ +Q V +F+ +++++ + D L + ++P
Sbjct: 233 YCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAP 292
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
A YN ++ ++++A + M ++ +P T+ LI G C++ R+ EA+
Sbjct: 293 QAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFF 352
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVG 241
+M+ PD+ I L G
Sbjct: 353 HEMVEA-GCSPDSITVNCFISCLLKAG 378
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +++I L + + + + L ++ + V P+ + + +I+ Y R LLE A ++
Sbjct: 96 NVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYNTLINAYCRQGLLEEAFEL 154
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D MS ++ V ++N ++N + GK R + M K +SPD +YNIL+ C
Sbjct: 155 MDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCR 214
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + DA ++FDEM + + P LV+F LI L +D+ALK DM + PD
Sbjct: 215 NDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA-GLAPDNV 273
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ LI G C G +S AL ++EM+ +D
Sbjct: 274 IYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 307
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I R + E ++ ++ V+ + + + +++ + ++L A ++F EM
Sbjct: 275 YTILIGGFCRNGVMSEALKVRDEMLEQGCVL-DVVTYNTILNGLCKEKMLSEADELFTEM 333
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V +F TL+N G +++ LF++M ++ + PD +YN L+ G +
Sbjct: 334 TERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM 393
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E +++++M+ RR+ P +++G LI G C V EA +L ++M+ + +
Sbjct: 394 EKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVE-KGFEATIITCNT 452
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KG C G A F M+ I D
Sbjct: 453 IVKGYCRAGNAVKADEFLSNMLLKGIVPDG 482
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 41 AQPLKP--FRYNLLHYDLIIT-KLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
+ LKP F YN + L T K RAK + DE+ +I + DT ++ C
Sbjct: 160 GKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI--GMSPDTATYNILLVEC----- 212
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
R + A ++FDEM S V + SF+ L+ + G +D+ F+ M+ ++PD
Sbjct: 213 -CRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPD 271
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
Y IL+ G + + +A KV DEML++ +VT+ T++ GLC E + EA +L
Sbjct: 272 NVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFT 331
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+M V PD F +LI G G ++ A+ E M++ ++ D
Sbjct: 332 EMTE-RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDV 377
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +++ Y+ +I + ++V ++ + + R+ P I + +I+ Y +
Sbjct: 373 LKP---DVVTYNTLIDGFCKGSEMEKVNELWNDMIS-RRIYPNHISYGILINGYCNMGCV 428
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNIL 162
A +++DEM + T+ + NT++ G + + L ++ K + PD +YN L
Sbjct: 429 SEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTL 488
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + ++ A+ + ++M L P ++T+ ++ G + R+ EA + M+
Sbjct: 489 INGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE-RG 547
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V PD + SLI G L A +EM++
Sbjct: 548 VNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQ 580
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ- 146
++F ++ Y +AR L + F + S + ++ + N+LL ++ G +D +++Q
Sbjct: 28 LVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQE 87
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++ V + + NI+++ ++++E+ +M ++ + P +VT+ TLI C +
Sbjct: 88 VVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGL 147
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
++EA +L D M +KP + ++I GLC G+ A G +EM++
Sbjct: 148 LEEAFELM-DSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLK 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ ++ + V P+ F +I+ Y + + A+ +
Sbjct: 306 DVVTYNTILNGLCKEKMLSEADELFTEMT-ERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M N++ V ++NTL++ +++++ +L+ M + + P+ SY IL++G
Sbjct: 365 FEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCN 424
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVT----------------------------------- 193
+ +A++++DEM+++ + T++T
Sbjct: 425 MGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGIT 484
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ TLI G E +D A L + M + PD + ++ G G + A
Sbjct: 485 YNTLINGFIKEENMDRAFALV-NKMENSGLLPDVITYNVILNGFSRQGRMQEA 536
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++ + I+ RA + + L + +VP+ I + +I+ + + ++
Sbjct: 441 KGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG-IVPDGITYNTLINGFIKEENMD 499
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILM 163
A + ++M + + V ++N +LN G++ + +++E+ V+PD +Y L+
Sbjct: 500 RAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 559
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQP 189
+G V L++A++V DEML+R P
Sbjct: 560 NGHVTQNNLKEAFRVHDEMLQRGFVP 585
>gi|297847954|ref|XP_002891858.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337700|gb|EFH68117.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 395
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 133/287 (46%), Gaps = 48/287 (16%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L S++ +++P+ ++ FK +A + FR N+ YD + +L AK V+
Sbjct: 41 LTSIVNGERNPQRIVEKFK---------KACESERFRNNIAVYDRTVRRLVAAKRLHFVE 91
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VFDEM N +R+V SFN LL+A
Sbjct: 92 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFDEMPDRNCKRSVLSFNALLSA 150
Query: 132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
K D + LF + +S PD SYN L+ L +A + DE + L+P
Sbjct: 151 YGLSKKFDVVEQLFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEFENKGLKP 210
Query: 190 TLVTFGTL-----------------------------------IYGLCLELRVDEALKLK 214
+VTF TL + GL E++ E + L
Sbjct: 211 DIVTFNTLLLSSYLKGQFELGEEIWAKLVEKNVPIDIRTYNARLLGLASEVKSKELVSLF 270
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
E+ ++ +KPD F ++I+G G++ A + +E+V++ D
Sbjct: 271 EE-LKASGIKPDVFSFNAMIRGSINQGKMDEAESWYKEIVKHGYRPD 316
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 110/211 (52%), Gaps = 3/211 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + + ++L ++ +++ G +K FD V+Q+ ++L + P+ + + +I
Sbjct: 133 PDRNCKRSVLSFNALLSAYGLSKKFDVVEQLFNELPGKLSIKPDIVSYNTLIKALCEKDS 192
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
L A+ + DE + ++ + +FNTLL + G+ + +++ +++EK V D +YN
Sbjct: 193 LPEAVALLDEFENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKLVEKNVPIDIRTYNA 252
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+ G + ++ +F+E+ ++P + +F +I G + ++DEA +++++ +
Sbjct: 253 RLLGLASEVKSKELVSLFEELKASGIKPDVFSFNAMIRGSINQGKMDEAESWYKEIVK-H 311
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALG-FKE 251
+PD FA L+ +C G+ A+ FKE
Sbjct: 312 GYRPDKATFALLLPAMCKAGDFEFAIELFKE 342
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P + + +I + ++ ALQ+ +M + +++T+++ +L G++ D +
Sbjct: 541 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVV 600
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q+ + PDA +YN L+ G +RL +A + EML+ P++VT+ TL +GLC
Sbjct: 601 LRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCR 660
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R DEA+++ D M P+A ++S++ GLC G ++ ALG+ E+M R+++
Sbjct: 661 SGRFDEAVEIL-DYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 11/206 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ P N + YD +I L +A D I L D F +++ +
Sbjct: 235 DSMPQTGVSPNTVTYDALIDGLCKAGKLD----IALGLLRDKNSQAGMFAFSSLLHGLCQ 290
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
A LE A+Q+ M V FN+L+N + ++D +LF +M E S D +
Sbjct: 291 AHRLEEAIQLLKAMPCVP---NVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVIT 347
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKED 216
YNIL+ G RR+ +A++ E+++R P +VTF TLI GLC RV++A ++ E
Sbjct: 348 YNILLKGLCKLRRIPEAYRHV-ELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYER 406
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242
M+ V + P+ +A L++GLC G+
Sbjct: 407 MVAVEGISPNRFTYAFLLEGLCKAGD 432
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 2/209 (0%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y +I L + DE Q+L ++ + + + V+ + +E A+
Sbjct: 540 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-ELGCRANTVTYSTVVDGLLKVGRMEDAV 598
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
V +M ++NTL++ ++ L +++E P +Y L HG
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 658
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S R ++A ++ D M R P +T+ +++ GLC RV EAL E M R V P
Sbjct: 659 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPH 718
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVR 255
+++LI GLC G + A F E M+R
Sbjct: 719 VIAYSALIDGLCKAGRIDEAYEFLERMIR 747
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 31/241 (12%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L F + + Y+ ++ L +A + +L QL ++ P F + +A L
Sbjct: 169 LIGFTPDAVTYNTMVDGLYKAGRLEAAGMVL-QLLAESFSSPTVFTFTIAVDGLSKAGNL 227
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID------------------------ 139
A + FD M V +++ L++ + GK+D
Sbjct: 228 TGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHG 287
Query: 140 -----RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
R+ + Q+++ P+ +N LM+G +RR+++A+++FD M + ++T
Sbjct: 288 LCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVIT 347
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ L+ GLC R+ EA + E M R P+ F++LI+GLC G ++ A E M
Sbjct: 348 YNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERM 407
Query: 254 V 254
V
Sbjct: 408 V 408
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 39/248 (15%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLE-- 104
R N + Y ++ L + ++ +L Q++ D +P+ + + +I F+ R RL E
Sbjct: 575 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMR-DAGCLPDAVTYNTLIDGFFKRQRLREAV 633
Query: 105 --------------------------------HALQVFDEMSSFNVQRTVKSFNTLLNAM 132
A+++ D M++ +++++++ +
Sbjct: 634 GLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGL 693
Query: 133 LTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
G++ F+ M ++ V+P +Y+ L+ G + R+++A++ + M++ P
Sbjct: 694 CKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPD 753
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VTF LI GLC R+D L+L M K D + ++I C GE S A
Sbjct: 754 VVTFSILINGLCDAGRIDTGLELFCGMAE-RGCKADIYAYNAMINAYCLKGEFSAAYALL 812
Query: 251 EEMVRNKI 258
EEM + I
Sbjct: 813 EEMKTHGI 820
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 9/204 (4%)
Query: 50 NLLHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
N + Y+ ++ L GRAK E +L ++ + PE I F +I + +E A
Sbjct: 70 NAVTYNTLVNALLGQGRAK---EAFSLLERMAANG-CPPELITFGLIIKGLCKEGEIEAA 125
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+V DEM V+ LL+A+ G++D F Q++ +PDA +YN ++ G
Sbjct: 126 FRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDG 185
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ RLE A V + + PT+ TF + GL + A + + M + V P
Sbjct: 186 LYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT-GVSP 244
Query: 226 DAQVFASLIKGLCAVGELSLALGF 249
+ + +LI GLC G+L +ALG
Sbjct: 245 NTVTYDALIDGLCKAGKLDIALGL 268
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 92/190 (48%), Gaps = 8/190 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + + ++I L DE H + D R +EI + +I+ +R E AL++
Sbjct: 823 NTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCR---DEISYNTLITSLVASRRSEQALEL 879
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M + ++ T+++ + G + L Q M + SPD +Y I++ G
Sbjct: 880 LRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSK 939
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++L A F+EML++ L+P + + +LI C +VD+A KL +R ++P
Sbjct: 940 AKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL----LRSSGIEPTIT 995
Query: 229 VFASLIKGLC 238
++++++ LC
Sbjct: 996 MYSTMVDSLC 1005
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 96/201 (47%), Gaps = 11/201 (5%)
Query: 51 LLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L +A ++ D ++ R P + + VI R ++ ++
Sbjct: 1 MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFR--PTVVTYSTVIDGLCRDNEVDKGCKL 58
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
+EM+ ++NTL+NA+L G R + F ++E+ + P+ ++ +++ G
Sbjct: 59 LEEMAGRGCAPNAVTYNTLVNALLGQG---RAKEAFSLLERMAANGCPPELITFGLIIKG 115
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+E A++V DEM+ R P + L++ LC RVDEA + ++ + P
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLI-GFTP 174
Query: 226 DAQVFASLIKGLCAVGELSLA 246
DA + +++ GL G L A
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAA 195
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH 164
A F + F + TV +++T+++ + ++D+ L + M + +P+A +YN L++
Sbjct: 20 AFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVN 79
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ R ++A+ + + M P L+TFG +I GLC E ++ A ++ ++M+ V
Sbjct: 80 ALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFV- 138
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD ++ L+ LC +G + A F ++++
Sbjct: 139 PDVEIHTVLLHALCELGRVDEAWFFFQQVL 168
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
T+ ++NTL+ + G + L + M E +SPD ++N ++ G +R+ DA VF
Sbjct: 472 TLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVF 531
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
L+R +P +VT+ TLI GL ++DEAL+L M+ + + + +++++ GL
Sbjct: 532 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL-GCRANTVTYSTVVDGLLK 590
Query: 240 VGELSLAL 247
VG + A+
Sbjct: 591 VGRMEDAV 598
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y I+ L +A E ++ D V P I + +I +A ++ A +
Sbjct: 682 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEF 741
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ M V +F+ L+N + G+ID +LF M E+ D +YN +++ +
Sbjct: 742 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCL 801
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
A+ + +EM + VT G +I LC R+DEA+
Sbjct: 802 KGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVS 845
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 36/247 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +A DE + L ++ R+ P+ + F +I+ A ++ L++
Sbjct: 718 HVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRI-PDVVTFSILINGLCDAGRIDTGLEL 776
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
F M+ + + ++N ++NA G+ L + M+ +
Sbjct: 777 FCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCG 836
Query: 152 -------VS-----PDAC----SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
VS P+ C SYN L+ V SRR E A ++ M+ P +
Sbjct: 837 NDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYM 896
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
T++ GL + A KL ++M R PD + + +I GL +L LA + EEM+R
Sbjct: 897 TVMDGLFKAGSPEVAAKLLQEM-RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLR 955
Query: 256 NKIEMDA 262
++ DA
Sbjct: 956 KNLKPDA 962
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN+L++G + R+ DA+ F + ++ +PT+VT+ T+I GLC + VD+ KL E+M
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P+A + +L+ L G A E M N
Sbjct: 63 AG-RGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAAN 100
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 26/229 (11%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ L + + E + + ++ P + F +I A + A +V
Sbjct: 344 DVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEV 403
Query: 110 FDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ---------------------- 146
++ M + + ++ LL + G R+ F+
Sbjct: 404 YERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDF 463
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
+M + P +YN L+ G S + DA + + M++ L P ++TF +++ GLC E R
Sbjct: 464 LMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQR 523
Query: 207 VDEALKL-KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +A + K + R +P+ +++LI GL + ++ AL +MV
Sbjct: 524 ILDAHNVFKRALER--GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV 570
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGC 166
++FDE ++ + +N L+N+ T G IDR ++ MEK ++PD +YN LM G
Sbjct: 343 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 402
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ R+++A K+ DEM +R +QP LVT+ TLI G ++ V +AL+++ +MM P
Sbjct: 403 CLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMN-KGFNPT 461
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI+GLC G+ A +EMV N I D
Sbjct: 462 LLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 496
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 11/226 (4%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + P +Y Y +I+ + DE ++ ++ V PE +++ +I Y
Sbjct: 173 ERGGIAPNQYT---YGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPD 155
L+ AL D M V TV ++N L++A+ G R T+ ++++E K ++PD
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDG---RGTEAYELVEEMGGKGLAPD 286
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL++G ++ A ++F+ M +R ++ T+VT+ LIY L + +V E KL +
Sbjct: 287 VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFD 346
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +R ++PD ++ +LI G + A EM + +I D
Sbjct: 347 EAVR-RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F +M + +FN +L + + GK R +L + M + P+A +YN ++ G
Sbjct: 98 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 154
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A + EM +R + P T+GT+I G C RVDEA+K+ ++M+ VK
Sbjct: 155 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 214
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P+A ++ +LI G C G+L AL +++ MV + M
Sbjct: 215 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 250
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-L 77
+ + K AL++F+N + R ++ Y +I L + E ++ + +
Sbjct: 300 EGNVKKALEIFEN----------MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAV 349
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
+ R P+ +++ +I+ + + ++ A ++ EM + ++NTL+ + G+
Sbjct: 350 RRGIR--PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGR 407
Query: 138 IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+D L ++ E+ + PD +YN L+ G + ++DA ++ +EM+ + PTL+T+
Sbjct: 408 VDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 467
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
LI GLC + D+A + ++M+ + PD + SLI+GL E ++
Sbjct: 468 LIQGLCKNGQGDDAENMVKEMVE-NGITPDDSTYISLIEGLTTEDERAI 515
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 7/218 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I I+ +++ + P + + VIS + + ++ A+
Sbjct: 142 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 201
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILM 163
+VFDEM + V+ +N L+ GK+D T L +++E+ V+ +YN+L+
Sbjct: 202 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--TALLYRDRMVERGVAMTVATYNLLV 259
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H + R +A+++ +EM + L P + T+ LI G C E V +AL++ E+M R V
Sbjct: 260 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR-RGV 318
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +LI L G++ +E VR I D
Sbjct: 319 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPD 356
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + +I + ++ ++FDE ++ + +N L+N+ T G IDR ++
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756
Query: 148 MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
MEK ++PD +YN LM G + R+++A K+ DEM +R +QP LVT+ TLI G ++
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 816
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V +AL+++ +MM P + +LI+GLC G+ A +EMV N I D
Sbjct: 817 VKDALRIRNEMMN-KGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPD 870
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 109/216 (50%), Gaps = 8/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +I+ + DE ++ ++ V PE +++ +I Y L+ AL
Sbjct: 554 NQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLY 613
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHG 165
D M V TV ++N L++A+ G R T+ ++++E K ++PD +YNIL++G
Sbjct: 614 RDRMVERGVAMTVATYNLLVHALFMDG---RGTEAYELVEEMGGKGLAPDVFTYNILING 670
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ A ++F+ M +R ++ T+VT+ LIY L + +V E KL ++ +R ++P
Sbjct: 671 HCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVR-RGIRP 729
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D ++ +LI G + A EM + +I D
Sbjct: 730 DLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 765
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F +M + +FN +L + + GK R +L + M + P+A +YN ++ G
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARALELLRQMPR---PNAVTYNTVIAG 528
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A + EM +R + P T+GT+I G C RVDEA+K+ ++M+ VK
Sbjct: 529 FCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVK 588
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P+A ++ +LI G C G+L AL +++ MV + M
Sbjct: 589 PEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 624
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDT 81
K AL++F+N + R ++ Y +I L + E ++ + ++
Sbjct: 678 KKALEIFEN----------MSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGI 727
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R P+ +++ +I+ + + ++ A ++ EM + ++NTL+ + G++D
Sbjct: 728 R--PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEA 785
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L ++ E+ + PD +YN L+ G + ++DA ++ +EM+ + PTL+T+ LI G
Sbjct: 786 RKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQG 845
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
LC + D+A + ++M+ + PD + SLI+GL E ++
Sbjct: 846 LCKNGQGDDAENMVKEMVE-NGITPDDSTYISLIEGLTTEDERAI 889
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 7/218 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I I+ +++ + P + + VIS + + ++ A+
Sbjct: 516 RPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAV 575
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILM 163
+VFDEM + V+ +N L+ GK+D T L +++E+ V+ +YN+L+
Sbjct: 576 KVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD--TALLYRDRMVERGVAMTVATYNLLV 633
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H + R +A+++ +EM + L P + T+ LI G C E V +AL++ E+M R V
Sbjct: 634 HALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR-RGV 692
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +LI L G++ +E VR I D
Sbjct: 693 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPD 730
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 129/252 (51%), Gaps = 17/252 (6%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
+A LR + + ALQ F+ NT A F++ L Y ++I KLGR D +
Sbjct: 42 HVAHALRREPNVLYALQHFQYLT----NTLA-----FKHTPLTYHVMIEKLGRNSELDAL 92
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
ILHQ+K + ++ C V++ Y + L + AL++F + F + TVK +N LL+
Sbjct: 93 HYILHQMKIERIPCSQDSFIC-VLNSYKNSGLGDRALKMFYRIKEFGCKPTVKIYNHLLD 151
Query: 131 AML--TCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
A+L + K + +++ M + + P+ +YN+L+ + +L+ A K+ EM KR
Sbjct: 152 ALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDGACKLLVEMSKRGC 211
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P V++ T++ +C + RV+EA ++ R + + V +LI GLC G +
Sbjct: 212 VPDGVSYTTVVAAMCEDGRVEEA----REVARRFGAEGVVSVCNALICGLCREGRVGEVF 267
Query: 248 GFKEEMVRNKIE 259
G +EMV N ++
Sbjct: 268 GLMDEMVGNGVD 279
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N++ Y +I+ L + +L ++ + R P F +++ Y + +
Sbjct: 281 NVVSYSSVISWLSDVGEVELALAVLGKMIRRGCR--PNVHTFSSLMKGYFLGGRVGEGVG 338
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGC 166
++ M V+ V +NTLLN + G + D+ MEK + P+ +Y+ L+HG
Sbjct: 339 LWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGF 398
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V + L+ A +V+++M+ ++P +V + +++ LC D+A +L D M P
Sbjct: 399 VKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSMFDQAYRLI-DNMATDGCPPT 457
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVR 255
F + IKGLC G + A+ ++M R
Sbjct: 458 VVTFNTFIKGLCCGGRVLWAMRVVDQMQR 486
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 103/211 (48%), Gaps = 3/211 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y ++ +A ++ +++ + V P +++ +++ + + + A
Sbjct: 385 RPNVTTYSTLVHGFVKAGDLQGASEVWNKMV-NCGVRPNVVVYTSMVDVLCKNSMFDQAY 443
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGC 166
++ D M++ TV +FNT + + G++ + M++Y PD +YN L+ G
Sbjct: 444 RLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGL 503
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
L++A ++ E+ +R+++ LVT+ T++YG + + L++ M+ V VKPD
Sbjct: 504 FSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRML-VNGVKPD 562
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
A +I +G++ A+ F + + K
Sbjct: 563 AITVNVVIYAYSKLGKVRTAIQFLDRITAGK 593
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y ++ L + MFD+ +++ + D P + F I + A+
Sbjct: 420 RPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDG-CPPTVVTFNTFIKGLCCGGRVLWAM 478
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+V D+M + +++N LL+ + + ++ +L ++ E+ V + +YN +M+G
Sbjct: 479 RVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGF 538
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ E +V ML ++P +T +IY +V A++ + + + PD
Sbjct: 539 SSHGKEEWVLQVLGRMLVNGVKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPD 598
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
SL+ G+C +LG +E +V
Sbjct: 599 IIAHTSLLWGICN------SLGIEEAIV 620
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/204 (18%), Positives = 93/204 (45%), Gaps = 5/204 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y ++ + +E +++ + + V + C + R + + D
Sbjct: 216 VSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCNALICGLC----REGRVGEVFGLMD 271
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
EM V V S++++++ + G+++ + L +++ + P+ +++ LM G +
Sbjct: 272 EMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGG 331
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+ + ++ M+ ++P +V + TL+ GLC + EA+ + M + +P+ +
Sbjct: 332 RVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTY 391
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
++L+ G G+L A +MV
Sbjct: 392 STLVHGFVKAGDLQGASEVWNKMV 415
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I + +A + + Q+ H + P E + +I+ + + LL+ A +V
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQM-HVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM+ ++ ++N L+N G+++ L Q M K V PD SY+ ++ G
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ L+ A+++ EM+ + + P VT+ +LI GLC + R+ EA + ++M+ + + PD
Sbjct: 241 NQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTI-KLPPDEF 299
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI C G+L+ AL +EM++ DA
Sbjct: 300 TYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDA 333
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 3/223 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ LK NL+ +++II L R E ++L ++ VP+E+ + +++ Y +
Sbjct: 43 SMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKG-YVPDEVTYNTLVNGYCKE 101
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
AL + EM + V ++ +L+N+M G ++R + F Q+ + + P+ +Y
Sbjct: 102 GNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTY 161
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++G L++A++V +EM + P++VT+ LI G C+ R++EA+ L +DM+
Sbjct: 162 TTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVG 221
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V PD ++++I G EL A K EM+ + DA
Sbjct: 222 -KGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II + + DE ++L+++ + +P + + +I+ + +E A+ + +M
Sbjct: 161 YTTIINGFAQQGLLDEAYRVLNEMTR-SGFIPSIVTYNALINGHCVLGRMEEAIGLLQDM 219
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
V V S++T+++ ++DR + +++ K V PDA +Y+ L+ G RRL
Sbjct: 220 VGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRL 279
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A +F EML +L P T+ TLI C E +++AL L ++M++ PDA +
Sbjct: 280 TEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQ-KGFLPDAVTYNV 338
Query: 233 LIKGL 237
LI GL
Sbjct: 339 LINGL 343
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ +YN ++ G +R ++A+ M + L+P L+TF +I GLC + R+ E ++
Sbjct: 16 PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+M R V PD + +L+ G C G AL EMVRN +
Sbjct: 76 LVEMSRKGYV-PDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGL 119
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P+ + + +IS + R + L+ A Q+ EM +V ++++L+ + ++
Sbjct: 224 VLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEAC 283
Query: 143 DLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D+FQ ++ + PD +Y L++ L A + DEM+++ P VT+ LI GL
Sbjct: 284 DMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL 343
Query: 202 CLELRVDEALKLKEDMMRVY--NVKPDAQVFASLIKGLCAV---GELSLALGF 249
+ R EA +L +++++ + P A + +LI+ C + ++L GF
Sbjct: 344 NKQARSKEARRL---LLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGF 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II+ R + D Q+ ++ + V+P+ + + ++I R L A +
Sbjct: 227 DVVSYSTIISGFARNQELDRAFQMKVEMIGKS-VLPDAVTYSSLIQGLCEQRRLTEACDM 285
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG--- 165
F EM + + ++ TL+NA G +++ L ++++K PDA +YN+L++G
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNK 345
Query: 166 ---CVVSRRL--------------------------------------------EDAWKV 178
+RRL ++A +V
Sbjct: 346 QARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQV 405
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
F+ M+ + +P + +I+G C V +A KL ++M+ V + P +L+K L
Sbjct: 406 FESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHV-DFVPHTVTVLALVKALF 464
Query: 239 AV---GELSLALG 248
GEL+ +G
Sbjct: 465 TEGMDGELNEVIG 477
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+ F EM + P +VT+ T+I G C R DEA M + ++P+ F +I
Sbjct: 2 GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRS-MGLKGLEPNLITFNMII 60
Query: 235 KGLCAVGEL 243
GLC G L
Sbjct: 61 NGLCRDGRL 69
>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Vitis vinifera]
Length = 666
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 17/245 (6%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
L+ + D LAL+ FK+ + K F++ L Y ++I KL + D VQ +L
Sbjct: 50 LKHEHDITLALEYFKSIANS---------KSFKHTPLTYQMMIEKLASEREMDCVQYLLQ 100
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
Q+K + E++ F +VI Y RA E AL+ F M F V+ TVK +N +L+A+L
Sbjct: 101 QMKLEGISCSEDL-FISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDE 159
Query: 136 GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ + ++ M+K + P+ +YNIL+ + R++ A K+ EM + P V++
Sbjct: 160 NRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSY 219
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI LC +V EA +L + P V+ +LI G+C A +EM+
Sbjct: 220 TTLISSLCKLGKVKEAREL------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM 273
Query: 255 RNKIE 259
I+
Sbjct: 274 NKGID 278
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 5/214 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N+ Y +I +A D ++ + + H P + + ++ R + A
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH--PNVVAYTCMVDVLCRNSMFNQAYC 442
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ + M N +FNT + + G++D +F Q+ P+ +YN L+ +
Sbjct: 443 LIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL 502
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RR +A+ + +M R ++ LVT+ T+IYG C + EAL+L M+ V KPDA
Sbjct: 503 KDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMV-VRGTKPDA 561
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I C G++++A+ + + K D
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPD 595
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 38/236 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + + F+E Q+L ++ + + P I + +I+ A +E +L V +M
Sbjct: 249 YNALINGVCKEYTFEEAFQLLDEMM-NKGIDPNVISYTTIINALSDAGNVELSLAVLAKM 307
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + +F +L+ G D + +++ + V P+ +YN LMHG R L
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL 367
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYG-------------------------------- 200
DA VF++M P + T+ LI G
Sbjct: 368 GDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCM 427
Query: 201 ---LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC ++A L E+ M+V N P+ F + IKGLC G + A+ ++M
Sbjct: 428 VDVLCRNSMFNQAYCLIEN-MQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L R MF++ ++ ++ + P + F I + ++ A++V
Sbjct: 420 NVVAYTCMVDVLCRNSMFNQAYCLIENMQVEN-CPPNTVTFNTFIKGLCGSGRVDWAIKV 478
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD+M + ++N LL+++L + L + ME + + + +YN +++G
Sbjct: 479 FDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCC 538
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L +A ++ +M+ R +P +T +I C + +V+ A++L D + PD
Sbjct: 539 AGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPDII 597
Query: 229 VFASLIKGLCA 239
+ SLI G+C
Sbjct: 598 AYTSLISGICT 608
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 6/205 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L F + I +K D + P + ++ + ++ A ++ EM
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDG-MEPNVFTYNILLKALCKNNRVDGAHKLLVEM 207
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
SS S+ TL++++ GK+ +L +P YN L++G E
Sbjct: 208 SSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSF----TPSVPVYNALINGVCKEYTFE 263
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A+++ DEM+ + + P ++++ T+I L V+ +L + M P+ F SL
Sbjct: 264 EAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMF-ARGCSPNLHTFTSL 322
Query: 234 IKGLCAVGELSLALGFKEEMVRNKI 258
IKG G AL F + M+R +
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGV 347
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/211 (17%), Positives = 93/211 (44%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++ I L + D ++ Q+ ++ P + ++ + R A +
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMG-NSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M ++ + ++NT++ G + +L +++ + PDA + NI++
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCK 573
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A ++ D + + P ++ + +LI G+C + V+EA+ M+ + P+
Sbjct: 574 QGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLS-EGISPNVA 632
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ L++ L + S A+ F + ++ + E
Sbjct: 633 TWNVLVRHLFSNMGHSGAVQFLDAVLGSGFE 663
>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 17/245 (6%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
L+ + D LAL+ FK+ + K F++ L Y ++I KL + D VQ +L
Sbjct: 50 LKHEHDITLALEYFKSIANS---------KSFKHTPLTYQMMIEKLASEREMDCVQYLLQ 100
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
Q+K + E++ F +VI Y RA E AL+ F M F V+ TVK +N +L+A+L
Sbjct: 101 QMKLEGISCSEDL-FISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDE 159
Query: 136 GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ + ++ M+K + P+ +YNIL+ + R++ A K+ EM + P V++
Sbjct: 160 NRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSY 219
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI LC +V EA +L + P V+ +LI G+C A +EM+
Sbjct: 220 TTLISSLCKLGKVKEAREL------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMM 273
Query: 255 RNKIE 259
I+
Sbjct: 274 NKGID 278
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 5/214 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N+ Y +I +A D ++ + + H P + + ++ R + A
Sbjct: 385 NVRTYSALIDGYAKAGDLDGASEVWNWMITHGCH--PNVVAYTCMVDVLCRNSMFNQAYC 442
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ + M N +FNT + + G++D +F Q+ P+ +YN L+ +
Sbjct: 443 LIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL 502
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RR +A+ + +M R ++ LVT+ T+IYG C + EAL+L M+ V KPDA
Sbjct: 503 KDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMV-VRGTKPDA 561
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I C G++++A+ + + K D
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPD 595
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 38/236 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + + F+E Q+L ++ + + P I + +I+ A +E +L V +M
Sbjct: 249 YNALINGVCKEYTFEEAFQLLDEMM-NKGIDPNVISYTTIINALSDAGNVELSLAVLAKM 307
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + +F +L+ G D + +++ + V P+ +YN LMHG R L
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSL 367
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYG-------------------------------- 200
DA VF++M P + T+ LI G
Sbjct: 368 GDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCM 427
Query: 201 ---LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC ++A L E+ M+V N P+ F + IKGLC G + A+ ++M
Sbjct: 428 VDVLCRNSMFNQAYCLIEN-MQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQM 482
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 93/191 (48%), Gaps = 3/191 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L R MF++ ++ ++ + P + F I + ++ A++V
Sbjct: 420 NVVAYTCMVDVLCRNSMFNQAYCLIENMQVE-NCPPNTVTFNTFIKGLCGSGRVDWAIKV 478
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD+M + ++N LL+++L + L + ME + + + +YN +++G
Sbjct: 479 FDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCC 538
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L +A ++ +M+ R +P +T +I C + +V+ A++L D + PD
Sbjct: 539 AGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLM-DRLSAGKWHPDII 597
Query: 229 VFASLIKGLCA 239
+ SLI G+C
Sbjct: 598 AYTSLISGICT 608
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 6/205 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L F + I +K D + P + ++ + ++ A ++ EM
Sbjct: 149 YNHILDALLDENRFQMINPIYSNMKKDG-MEPNVFTYNILLKALCKNNRVDGAHKLLVEM 207
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
SS S+ TL++++ GK+ +L +P YN L++G E
Sbjct: 208 SSKGCDPDEVSYTTLISSLCKLGKVKEAREL----AMSFTPSVPVYNALINGVCKEYTFE 263
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A+++ DEM+ + + P ++++ T+I L V+ +L + M P+ F SL
Sbjct: 264 EAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMF-ARGCSPNLHTFTSL 322
Query: 234 IKGLCAVGELSLALGFKEEMVRNKI 258
IKG G AL F + M+R +
Sbjct: 323 IKGFFLKGGSHEALDFWDRMIREGV 347
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/189 (16%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++ I L + D ++ Q+ ++ P + ++ + R A +
Sbjct: 455 NTVTFNTFIKGLCGSGRVDWAIKVFDQMG-NSGCFPNTTTYNELLDSLLKDRRFGEAFGL 513
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M ++ + ++NT++ G + +L +++ + PDA + NI++
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCK 573
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A ++ D + + P ++ + +LI G+C + V+EA+ M+ + P+
Sbjct: 574 QGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLS-EGISPNVA 632
Query: 229 VFASLIKGL 237
+ L++ L
Sbjct: 633 TWNVLVRHL 641
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 109/208 (52%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I L + K+ +E I +K R+ P+ + ++I R + A +
Sbjct: 234 NVVTYNILIDSLCKDKLVNEALDIFSYMKA-KRISPDIFTYNSLIQGLCNFRRWKEASAL 292
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM+S N+ + +FN L++A+ GK+ +F+ M E V PD +Y+ LM+G +
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSL 352
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+FD M+ + +P ++ LI G C R+DEA +L +M+ + PD
Sbjct: 353 RMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIH-QGLTPDNV 411
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI GLC +G L A + M N
Sbjct: 412 NYNTLIHGLCQLGRLREAQDLFKNMHSN 439
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + F +I+ + A++ FD+ + Q TV ++ T++N + G+ L
Sbjct: 163 PDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGL 222
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ ME+ P+ +YNIL+ + + +A +F M +R+ P + T+ +LI GLC
Sbjct: 223 FKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCN 282
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R EA L +M + N+ P+ F L+ +C G++S A G + M +E D
Sbjct: 283 FRRWKEASALLNEMTSL-NIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPD 339
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 3/215 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A K + + Y+++I +AK DE +Q+ +++ H + P+ + + +I +
Sbjct: 364 DAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG-LTPDNVNYNTLIHGLCQ 422
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACS 158
L A +F M S + +++ LL+ G + + LF++M+ Y+ PD
Sbjct: 423 LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAM 482
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL+ L+DA K+F E+ + L P + + T+I LC E +DEAL+ + M
Sbjct: 483 YNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRN-M 541
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +I+G + S A EM
Sbjct: 542 EGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEM 576
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIME-KYVSPDACS 158
R ++ AL F+ M + F LL+A++ G+ + L + ME +SPD +
Sbjct: 73 RNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYT 132
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+IL+ +R++ A+ VF +M+K LQP VTF TLI GLC + +A++ +D
Sbjct: 133 LSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDD-F 191
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P + ++I GLC +GE + A G ++M
Sbjct: 192 EASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM 226
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 2/147 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY- 151
+I + + ++ A VF +M +Q +FNTL+N + GK + + F E
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
P +Y +++G A +F +M + QP +VT+ LI LC + V+EAL
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEAL 255
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ M+ + PD + SLI+GLC
Sbjct: 256 DIFS-YMKAKRISPDIFTYNSLIQGLC 281
>gi|356504195|ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like
[Glycine max]
Length = 1114
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 19/250 (7%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q DP LA ++F + P FR+ Y +++ KLGR+K F
Sbjct: 58 SPTRVQKLIASQSDPLLAKEIFDLASRQPK---------FRHTYSSYLILLLKLGRSKHF 108
Query: 68 DEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ +L +LK D+ + P +F +I Y A L + AL F + FN + K N
Sbjct: 109 SLLDDLLRRLKFDSHPITP--TLFTYLIKVYAEADLPDKALNSFYTILHFNCKPLPKHLN 166
Query: 127 TLLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+L +++ R LF+ +Y V PD SYNILM ++ + A+ +F++M K
Sbjct: 167 RILEVLVSHRNFIRPAFYLFKDAHRYGVEPDTKSYNILMRAFCLNGDISVAYSLFNKMFK 226
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R L P + ++ L+ LC + +V+ A+ L EDM+ V PD +L+ GLC +G L
Sbjct: 227 RDLVPDIESYRILMQALCRKSQVNGAVDLLEDMLNKGFV-PD----RTLVSGLCDMGMLD 281
Query: 245 LALGFKEEMV 254
A + EEM+
Sbjct: 282 EASKYVEEML 291
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G ++EDA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + +E A ++FDEM + + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GSCKEGHLETAFEYRKRMIKE-NIRLDDVAYTALISGLCQEG 360
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + ++ ++ ++ ++ +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMEDANELFDEMLNNG-LVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 87 EIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+I+ CN+ I + +A+ + AL++F EM +Q ++ TL+N + G + ++F
Sbjct: 360 DIVSCNILIDAFCKAKKVTSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYCNLAEEIF 419
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ V P+ YNI++H + + E A K+F +M+++ + P ++TF TLIY L
Sbjct: 420 EQMLKAQVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITFNTLIYWLGKS 479
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R EA+ L D MR V+PD+ F LI GL G+ +LA E M+ N I +D
Sbjct: 480 SRAIEAVDLFRD-MRARGVEPDSLTFRYLISGLLEEGKATLAYEVWEYMMENGIILD 535
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 47/266 (17%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF + +LR D + A+Q + P Q + +LL D F
Sbjct: 95 PFVVNRVLRSVSDSETAVQFYWWAESRPGFDHTQFAIAYIVSLLFID---------SNFF 145
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-----FNVQR--- 120
+ + L +++ V ++ ++S Y RA + +Q FDEM + F V
Sbjct: 146 LLSEFLERVRSQG-VTLHRSLYRILLSGYVRAGKFDSVIQTFDEMVTSGCREFGVDYNRF 204
Query: 121 ---------------------------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-V 152
T +++ ++A+ +I+ + L M+K+
Sbjct: 205 IGVLVKNCCFDLVEKYYGVALDKGFCLTSFTYSRWISALCQSDRIELVERLLADMDKFGC 264
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD + NI + RL DA + + M R P +VT+ T++ LC + EA++
Sbjct: 265 FPDIWACNIYVDYLCKQNRLHDALMMLENMEMRGTGPDVVTYTTIVGCLCDNKQFAEAVE 324
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLC 238
L E+MMR VKPD LI GLC
Sbjct: 325 LWEEMMR-RGVKPDIISCGVLIFGLC 349
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL+LFK K + + + Y +I L + ++I Q+ +VV
Sbjct: 380 ALKLFKE----------MGYKGIQADAVTYGTLINGLYGVGYCNLAEEIFEQMLK-AQVV 428
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ ++ +A E A ++F +M V V +FNTL+ + + DL
Sbjct: 429 PNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDVITFNTLIYWLGKSSRAIEAVDL 488
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
F+ M + V PD+ ++ L+ G + + A++V++ M++
Sbjct: 489 FRDMRARGVEPDSLTFRYLISGLLEEGKATLAYEVWEYMME 529
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + +E ++ ++ V F +I Y + L + A V DEM
Sbjct: 313 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTP-YSFNPLIEGYCKQGLFDDAWGVTDEM 371
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + T ++N + A+ G+ID D +++ +PD SYN LMHG + +
Sbjct: 372 LNAGIYPTTSTYNIYICALCDFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMGKFV 428
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A +FD++ + P++VT+ TLI GLC ++ A +LKE+M + PD + +L
Sbjct: 429 EASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTTL 487
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+KG G LS+A +EM+R I+ D
Sbjct: 488 VKGFVKNGNLSMATEVYDEMLRKGIKPDG 516
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ I L D+ +++L + P+ + + ++ Y + A +FD++
Sbjct: 383 YNIYICALCDFGRIDDARELLSSM-----AAPDVVSYNTLMHGYIKMGKFVEASLLFDDL 437
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++ ++ ++NTL++ + G ++ L + M + + PD +Y L+ G V + L
Sbjct: 438 RAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNL 497
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDMMRVYNVKPDAQV 229
A +V+DEML++ ++P + T G ELR+ D+A +L E+M+ + PD +
Sbjct: 498 SMATEVYDEMLRKGIKPDGYAYTTRAVG---ELRLGDSDKAFRLHEEMVATDHHAPDLTI 554
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
+ I GLC VG L A+ F+ ++ R
Sbjct: 555 YNVRIDGLCKVGNLVKAIEFQRKIFR 580
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P I F ++ +A LE +++ EM N++ + ++N L+N GK++
Sbjct: 271 IMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR 330
Query: 143 DLFQIMEKY---VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
M + V+P S+N L+ G +DAW V DEML + PT T+ I
Sbjct: 331 RFHGDMRRSGFAVTP--YSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYIC 388
Query: 200 GLCLELRVDEALKLKEDM------------------------------MRVYNVKPDAQV 229
LC R+D+A +L M +R ++ P
Sbjct: 389 ALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVT 448
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC G L A KEEM
Sbjct: 449 YNTLIDGLCESGNLEGAQRLKEEMT 473
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T++ L G+ +L+ +++ K + P +Y +L++G + RLE A++ EM
Sbjct: 589 TYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM 648
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLC 238
KR ++P ++T L+YG+C +DEA K++E+ + P+ + LI C
Sbjct: 649 KKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE-----GIPPNKYSYTMLISKNC 703
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + +EM+ +IE D
Sbjct: 704 DFEKWEEVVKLYKEMLDKEIEPDG 727
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +Y ++ G + + + + A ++DEML++RL P+++T+ LIYG R+++A +
Sbjct: 585 PDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQY 644
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+M + V+P+ +L+ G+C G + A
Sbjct: 645 STEMKK-RGVRPNVMTHNALLYGMCKAGNIDEA 676
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
Y + + E L F++M +V++ N +L + +++ + +++ M E + P
Sbjct: 215 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 274
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++N ++ C + LE K++ EM +R ++ + VT+ LI G +++EA +
Sbjct: 275 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 334
Query: 216 DMMRV-YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DM R + V P + F LI+G C G A G +EM+ I
Sbjct: 335 DMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDEMLNAGI 376
>gi|224088774|ref|XP_002308534.1| predicted protein [Populus trichocarpa]
gi|222854510|gb|EEE92057.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 6/214 (2%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ I+ L + + + Q+ +D V P+ + +I + + ++++A +VF
Sbjct: 164 LFSWNAILGVLVKVNQINVAKSFFDQIVNDAVVKPDASTYTTMIRGFCKVGMIDNARKVF 223
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM-TDLFQIME-KYVSPDACSYNILMHGCVV 168
DEM + + + NTL+N G ++ L ++ME K PD +Y+ L+ G
Sbjct: 224 DEMI---CEPNLITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCK 280
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A K D ML R P L T+ +IYGLCL VDEA +L MR+ VK +
Sbjct: 281 KGELNEARKWMDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTK-MRLNGVKENVA 339
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
S++KGL G+ A+G+ EM+R +++DA
Sbjct: 340 THLSILKGLSVAGKSEEAIGYFSEMIRKGMKLDA 373
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RVVPEEIIFCNVISFYGRARLLEHAL 107
NL Y+ II L DE +++L +++ + V + +S G++ E A+
Sbjct: 302 NLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSVAGKS---EEAI 358
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
F EM ++ K ++ A K D L + M+ K +S S+N ++
Sbjct: 359 GYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQAKGISRSVGSFNAVLRIL 418
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKP 225
V L+ A + ++ P LV++ T+I GLC R+ E L +DM++ +
Sbjct: 419 VEIGELDKAVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQ-DGFEM 477
Query: 226 DAQVFASLIKGLCAVGELSLAL-GFKEEMVRNKI 258
DA +++ L+ G C G +A+ F + + +N +
Sbjct: 478 DATLYSCLVGGFCEAGNEEMAMRAFYDSINKNYV 511
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/199 (18%), Positives = 85/199 (42%), Gaps = 2/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ + +I + + + L ++ +P+ + + +I Y + L A +
Sbjct: 231 NLITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKW 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
D M + ++N ++ + G +D L M V + ++ ++ G V
Sbjct: 291 MDGMLIRGCNPNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSV 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + E+A F EM+++ ++ +I C + DEA+ L ++ M+ +
Sbjct: 351 AGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKE-MQAKGISRSVG 409
Query: 229 VFASLIKGLCAVGELSLAL 247
F ++++ L +GEL A+
Sbjct: 410 SFNAVLRILVEIGELDKAV 428
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
N P P YN++ I + M +E ++ ++ D V P+ + + V+
Sbjct: 72 NRRGCPPSPVTYNVM-----IDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYNTVMDGL 125
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDA 156
++ +E AL +F+EM +S NT++ + KID+ +F ME K + PD+
Sbjct: 126 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDS 185
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
SY IL+ G + +L +A+K+F ML + P+ VT+ +I+G+CL +DEAL+L +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
MR +P F LI C G+L A
Sbjct: 246 -MRSKGCRPSRFTFNILIDAHCKRGKLDEAF 275
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 18/222 (8%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ + P ++ Y ++I L +A +E ++ ++ D+ + P + + VI
Sbjct: 177 EAKDIPPDSWS---YGILIDGLAKAGKLNEAYKLFQRML-DSGITPSAVTYNVVIHGMCL 232
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-------RMTDLFQIMEKYV 152
A L+ AL++F M S + + +FN L++A GK+D RMTD +
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHV----- 287
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD +Y+ L+ G R++DA + ++M+KR+ +PT+VT TLI+GLC R+ EA +
Sbjct: 288 -PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ D M PD + +L+ G C G+ A +MV
Sbjct: 347 VL-DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL+LFK+ ++ +P R+ ++++I + DE ++L ++ D V
Sbjct: 239 ALELFKS-------MRSKGCRPSRFT---FNILIDAHCKRGKLDEAFRLLKRMTDDGHV- 287
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +IS ++ A + ++M + TV + NTL++ + G+I ++
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M SPD +YN L+HG + + E A ++ +M+ R L P +VT+ L+ GLC
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ EA + M+ P+ + +LI G C+ G++ L EMV I D
Sbjct: 408 ANRLPEACGVFA-QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L +A ++ + + +L H + V P + + ++I A + A ++F +M
Sbjct: 13 YGILIDGLAKAGKLNDARNLFQKLLH-SGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + ++N +++A G ++ DL + M E PD +YN +M G S R+
Sbjct: 72 NRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 131
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A +F+EM + P + T+I GLC + ++D+A ++ +M ++ PD+ +
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EAKDIPPDSWSYGI 190
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI GL G+L+ A + M+ + I A
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSA 220
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 97/204 (47%), Gaps = 3/204 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ +I L +A E +++L + + P+ + + ++ + RA E A ++ +M
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + V ++ L++ + ++ +F Q+ +P+ +Y L+ G + +++
Sbjct: 388 ARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFAS 232
K+F EM+ + P V +GTL LC R AL+ L+E + + +V+
Sbjct: 448 GGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRF 507
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+ GL G++ +ALGF +MVR
Sbjct: 508 AVDGLLEAGKMEMALGFVRDMVRG 531
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRR 171
M+ NV S+ L++ + GK++ +LFQ ++ V+P +Y L+HG ++
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+DA ++F +M +R P+ VT+ +I C ++EA L + M+ +V PD +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYN 119
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
+++ GLC + AL EM R
Sbjct: 120 TVMDGLCKSSRVEEALLLFNEMER 143
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
E+ VSPD+ SY IL+ G + +L DA +F ++L + P+ V + +LI+GLC+ D
Sbjct: 3 ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+A +L DM R P + +I C G L A ++M+ +
Sbjct: 63 DARELFADMNR-RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED 109
>gi|255580475|ref|XP_002531063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529358|gb|EEF31324.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L L RL LAL FK A+ K F YN Y+ +I LG+ K F+ +
Sbjct: 117 LEVLKRLSNAGALALSFFK---------WAEKQKGFMYNTESYNALIDSLGKIKQFNMIW 167
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+++ +K + E F + Y R+ ++ A+ F++M F ++ FN LL+
Sbjct: 168 NLVNDMKRKGVLTKE--TFALISRRYARSGKVKEAMNTFEKMEKFGLKIESTDFNRLLDT 225
Query: 132 MLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
++ ++ ++F M+ + PD SY IL+ G + L +V+ EM +P
Sbjct: 226 LIKSRQVLSAQNVFDKMKIRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMKDEGFEPD 285
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+VT+G LI C + D+A++L + M N +P +F +LI GL +V LS AL F
Sbjct: 286 VVTYGILINAYCKVRKYDDAIELFRE-MESKNCQPSPHIFCTLINGLGSVRRLSEALEF 343
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 108/212 (50%), Gaps = 8/212 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y ++I + + +D+ ++ +++ P IFC +I+ G R L A
Sbjct: 282 FEPDVVTYGILINAYCKVRKYDDAIELFREME-SKNCQPSPHIFCTLINGLGSVRRLSEA 340
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILM 163
L+ F + ++N ++ A +ID RM D ++ + V P++ +Y+I++
Sbjct: 341 LEFFRRSKASGFAPETPTYNAVVGAYCWSMRIDDAYRMVD--EMRKSGVGPNSRTYDIIL 398
Query: 164 HGCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
H + + + +A+ VF++M + +PT+ T+ ++ C +V+ A+K+ D M+
Sbjct: 399 HHLIKAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDKVESAIKV-WDRMKAKG 457
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +F+ LI LC +L +A + +EM+
Sbjct: 458 VHPGMHMFSILINSLCHENKLDIACKYFQEML 489
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 105/214 (49%), Gaps = 8/214 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ F ++ Y +++ G+ K ++ ++ ++K D P+ + + +I+ Y + R
Sbjct: 244 IRRFVPDIKSYTILLEGWGQEKNLLKLDEVYREMK-DEGFEPDVVTYGILINAYCKVRKY 302
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSY 159
+ A+++F EM S N Q + F TL+N + G + R+++ + + +P+ +Y
Sbjct: 303 DDAIELFREMESKNCQPSPHIFCTLINGL---GSVRRLSEALEFFRRSKASGFAPETPTY 359
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N ++ S R++DA+++ DEM K + P T+ +++ L + EA + E M
Sbjct: 360 NAVVGAYCWSMRIDDAYRMVDEMRKSGVGPNSRTYDIILHHLIKAEKTTEAFSVFEKMSS 419
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P + +++ C + ++ A+ + M
Sbjct: 420 EEECEPTVSTYDIIVRMFCNMDKVESAIKVWDRM 453
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 10/190 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I LG + E + + K + PE + V+ Y + ++ A ++ DEM
Sbjct: 327 LINGLGSVRRLSEALEFFRRSKA-SGFAPETPTYNAVVGAYCWSMRIDDAYRMVDEMRKS 385
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-----SYNILMHGCVVSRR 171
V ++++ +L+ ++ K ++ T+ F + EK S + C +Y+I++ +
Sbjct: 386 GVGPNSRTYDIILHHLI---KAEKTTEAFSVFEKMSSEEECEPTVSTYDIIVRMFCNMDK 442
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A KV+D M + + P + F LI LC E ++D A K ++M+ V ++P A +F+
Sbjct: 443 VESAIKVWDRMKAKGVHPGMHMFSILINSLCHENKLDIACKYFQEMLDV-GIRPPAALFS 501
Query: 232 SLIKGLCAVG 241
L + L G
Sbjct: 502 HLKQALIEDG 511
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 21/247 (8%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L +LLRL++ PK ALQ+++N P N+ + ++I L RA
Sbjct: 851 LQALLRLKR-PKDALQVYRN------KLCCSP------NMFTFTILIHGLCRAGDIGTAY 897
Query: 72 QILHQL-KHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMS-SFNVQRTVKSFNTL 128
++L ++ +H VP+ +I NV I AR L+ AL++F EM S + V +++T+
Sbjct: 898 ELLKEMPRHG---VPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTI 954
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+++++ GK+D L + M K SP+ +Y+ L+HG + +L++A + M +
Sbjct: 955 VDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC 1014
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +VT+ T+I G C R+DEA L E+M+ +P+ + L+ C G+ A+
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD-GGCQPNVVTYTVLLDAFCKCGKAEDAI 1073
Query: 248 GFKEEMV 254
G E MV
Sbjct: 1074 GLVEVMV 1080
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 120/252 (47%), Gaps = 11/252 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP + +L+ DP AL F+ A+ +++ + + ++ L +A +
Sbjct: 92 SPEIVGKVLQRLIDPGAALVFFE---------WAETRDGYQHEIFCCNCLLNVLVKAHQY 142
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ + + + + + + + +IS + RA + A ++FDEM+ ++ +
Sbjct: 143 SQAHDLFRS-RIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKS 201
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+L + G+ F+ M K PD+ +YN +++G S RL+DA ++ +EM+
Sbjct: 202 ILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGF 261
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P + ++ T+++G C RV+ AL L E M+ PD + ++I GLC + ++ A
Sbjct: 262 APNVFSYNTVLHGFCKANRVENALWLLEQMV-TRGCPPDVVSYTTVINGLCKLDQVDEAC 320
Query: 248 GFKEEMVRNKIE 259
++M++ +
Sbjct: 321 RVMDKMIQRGCQ 332
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I L +AK E + L + + R P+ + + +V+ ++R + A +
Sbjct: 474 DVVAYSILIHALCKAKRLPEAESWLDVMVKN-RCYPDVVTYNSVVDGLCKSRRINDAFLL 532
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M + V V +++ ++++ +D + + M E PD +Y+ L++G
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A+ VF EML P LVT+ TLI GLC +V++A ++ E +MR + PD+
Sbjct: 593 AGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLE-IMRKQSCTPDSI 651
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ LI GLC L A EM
Sbjct: 652 TYTCLINGLCNASRLEEAWRVLREM 676
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 38/246 (15%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ +R N + Y+ I+ R + Q+L Q+ T P+ I + +IS + +A L
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVL-QMMIQTGCPPDAINYSTIISGFCKAGKLR 422
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILM 163
A + ++M + V +TL++A+ ID +L ++ + +PD +Y+IL+
Sbjct: 423 EAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILI 482
Query: 164 H-----------------------------------GCVVSRRLEDAWKVFDEMLKRRLQ 188
H G SRR+ DA+ +FD M +
Sbjct: 483 HALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVM 542
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P +VT+ +I+ C + +D A K+ E M V PD +++LI GLC G + A
Sbjct: 543 PDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCV-PDVVTYSALINGLCKAGTVDKAFD 601
Query: 249 FKEEMV 254
+EM+
Sbjct: 602 VFQEML 607
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 41/227 (18%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+LH + P+ + + +I+ ++ L+ A+++ +EM V S+NT+L+
Sbjct: 216 VLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 275
Query: 133 LTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
K +R+ + ++E+ V+ PD SY +++G ++++A +V D+M++R Q
Sbjct: 276 C---KANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 332
Query: 189 PTLVTFGTLIYGLCLELRVDEALKL-------------------------KEDMMRVYNV 223
P ++T+GTL+ G C +D A++L + DM R + V
Sbjct: 333 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQV 392
Query: 224 ---------KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PDA ++++I G C G+L A E+M+R D
Sbjct: 393 LQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPD 439
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L +A DE +L ++ + P + + +I + + ++ A +
Sbjct: 982 NVVTYSSLLHGLCKAGKLDEATALLQRMTR-SGCSPNIVTYNTIIDGHCKLGRIDEAYHL 1040
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM Q V ++ LL+A CGK + L ++M EK P+ +YN L+
Sbjct: 1041 LEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCK 1100
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+E A ++ M+++ P +V++ T+I GLC +V E + L E M+ N PD
Sbjct: 1101 KDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCVPDIV 1159
Query: 229 VFASLIKGLCAVGELSLA 246
F ++I +C + +A
Sbjct: 1160 TFNTIIDAMCKTYRVDIA 1177
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L +A E +L Q+ + VP+ + F +I + ++ A ++
Sbjct: 1122 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN-CVPDIVTFNTIIDAMCKTYRVDIAYEL 1180
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+ + + ++N+L++ + + D+ L + M ++ SPD +YN ++ G
Sbjct: 1181 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S+R++ A+K+F +ML L P VT+ +I LC +DEA + E M++ P A
Sbjct: 1241 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK-NGFDPGA 1299
Query: 228 QVFASLIKGLCAVGELSLAL 247
+ +LI G C G L AL
Sbjct: 1300 ITYGTLIDGFCKTGNLDKAL 1319
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I + D ++L ++K + + VP+ + + +I+ +A ++ A V
Sbjct: 544 DVVTYSIVIHSFCKDNNLDSAFKMLERMK-EAKCVPDVVTYSALINGLCKAGTVDKAFDV 602
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F EM + ++NTL++ + K+++ ++ +IM K +PD+ +Y L++G
Sbjct: 603 FQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCN 662
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ RLE+AW+V EM + P +T+GTL+ L
Sbjct: 663 ASRLEEAWRVLREMKDKGCLPDRMTYGTLLRAL 695
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 6/200 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
T Q P +++ Y+ +I L ++K D ++ Q+ D + P+++ + VIS
Sbjct: 1220 TRKQGCSP---DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG-LAPDDVTYSIVISSLC 1275
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ R ++ A V + M ++ TL++ G +D+ ++ Q++ K PD
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 1335
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+++I + RL A ++ + ML+ L P VT+ TL+ G C ++A+ L E +
Sbjct: 1336 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFE-V 1394
Query: 218 MRVYNVKPDAQVFASLIKGL 237
MR +PD + +L+ L
Sbjct: 1395 MRQCGCEPDNATYTTLVGHL 1414
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP + +++ + + +E A Q+ M V S+NT++ + K+
Sbjct: 1085 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 1144
Query: 144 LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L Q++ PD ++N ++ + R++ A+++F+ + + P LVT+ +L++GLC
Sbjct: 1145 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 1204
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R D+A L +M R PD + ++I GLC
Sbjct: 1205 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 1240
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ II + + D + L L ++ P + + +++ ++R + A +
Sbjct: 1157 DIVTFNTIIDAMCKTYRVD-IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
EM+ + ++NT+++ + ++DR LF Q++ ++PD +Y+I++
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 1275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R +++A V + MLK P +T+GTLI G C +D+AL++ + ++ PD
Sbjct: 1276 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDV 1334
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
F+ I L G L A E M+R
Sbjct: 1335 VTFSIFIDWLSKRGRLRQAGELLETMLR 1362
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L + DE +++ ++ P I + ++ + R L+ A+++
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVEL 357
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+M+ + ++N +++ ++R + Q+M + PDA +Y+ ++ G
Sbjct: 358 VRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCK 417
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +L +A + ++M++R +P + TLI LC +D A +L M + PD
Sbjct: 418 AGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLR-MSIGMDCAPDVV 476
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI LC L A + + MV+N+ D
Sbjct: 477 AYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F L++ + G I +L + M ++ P + +N+++ G +R+L+ A ++F EM
Sbjct: 879 TFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEM 938
Query: 183 LKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ P + T+ T++ L +VD+A +L EDM+ P+ ++SL+ GLC G
Sbjct: 939 EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVS-KGCSPNVVTYSSLLHGLCKAG 997
Query: 242 ELSLALGFKEEMVRN 256
+L A + M R+
Sbjct: 998 KLDEATALLQRMTRS 1012
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 127/240 (52%), Gaps = 14/240 (5%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
A+ +P + +L LQ D + AL+ F+ A + + +N Y +I LGR
Sbjct: 178 AQDLNPDAVVKVLNLQTDAQNALRFFQ---------WADKQEGYDHNTDAYFTMIDILGR 228
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV- 122
AKMF E+Q +L +++ R + ++ V+S YGR+ + +L+ F+ M + +
Sbjct: 229 AKMFTELQSLLQKMQTQGREITRSMLHSFVMS-YGRSGRFKESLEAFNLMKEMGYEPGLI 287
Query: 123 -KSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
++N++L +++ K+D +LF Q++ VS + +Y ++ + ++EDA K+ D
Sbjct: 288 DTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLD 347
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M++ P +VT+ +I LC +++A + + MR +P+ + +LI+GLCAV
Sbjct: 348 DMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQK-MRENGCEPNIYTYNALIQGLCAV 406
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 4/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL + +I + KM D ++ + ++++ P+ + + VIS + +++E A V
Sbjct: 323 NLTYTSMIQCFFLKEKMEDAMKLLDDMIQNN--YAPDVVTYTIVISALCKRKMIEQAYGV 380
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+M + + ++N L+ + + + +L +ME+ V P+ +Y IL HG
Sbjct: 381 LQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCK 440
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RRL+ A ++F+E L R L+P VT+ TL+ G C R+ EA+ + ++M + + PD
Sbjct: 441 LRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQ-NDCTPDHV 499
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+GL +L AL +EM
Sbjct: 500 TYTTLIQGLVQGNQLPDALRMHDEM 524
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 6/200 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A+ LKP N + Y+ ++ R E IL ++ H P+ + + +I
Sbjct: 452 NEALARGLKP---NRVTYNTLLNGYCRGSRLIEAMDILKEM-HQNDCTPDHVTYTTLIQG 507
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ L AL++ DEM + + N L + G + ++ M ++ +
Sbjct: 508 LVQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYS 567
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A Y + +H + +E+A + EM+ + P L T+ T+I G C + R+D+A +
Sbjct: 568 ASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLN 627
Query: 216 DMMRVYNVKPDAQVFASLIK 235
M+ + PD + LIK
Sbjct: 628 FMIE-NGIGPDTGSYNILIK 646
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 42/251 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N+ Y+ +I L + +E +++ L V P I+ I +G + R L+ A
Sbjct: 392 NIYTYNALIQGLCAVRRPEEALELV-TLMEQGGVPPN--IYTYTILTHGLCKLRRLDRAK 448
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+E + ++ ++NTLLN ++ D+ + M + +PD +Y L+ G
Sbjct: 449 EMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGL 508
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL------------------------- 201
V +L DA ++ DEM + T L GL
Sbjct: 509 VQGNQLPDALRMHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSA 568
Query: 202 --------CLEL--RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
CL ++EA L +M+ P+ + ++IKG C G L A
Sbjct: 569 SDYYLAIHCLSTAGEMEEAQALLYEMINK-GYSPNLTTYNTMIKGFCRQGRLDDADAMLN 627
Query: 252 EMVRNKIEMDA 262
M+ N I D
Sbjct: 628 FMIENGIGPDT 638
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 4/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++I+ L D + L+ V P+ + + ++S + L++AL +
Sbjct: 198 NLQTYNIILRSLCARGDVDRAVSLFSSLRRRG-VAPDRVTYSTLMSGLVKHDQLDNALDL 256
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
DEM + VQ +N LL+ G ++ +++ + + SP+ +Y +++ G
Sbjct: 257 LDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLC 316
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R ++A +V+ M+ QP VT+G LI+GLC VD A ++ DM++ V D
Sbjct: 317 KLGRFKEAGEVWSRMVANNHQPDTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVL-DV 375
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
V+ SLIKG C VG A F +
Sbjct: 376 AVYNSLIKGFCKVGRTGEAWKFWDS 400
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 10/215 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDT---RVVPEEIIFCNVI--SFYGRARLLEHALQ 108
++ ++ RA+ + E L H R+ P + N+I S R + + A+
Sbjct: 163 HNALLDAFVRARRYSEADAFFASLSHGACGRRLAPNLQTY-NIILRSLCARGDV-DRAVS 220
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+F + V +++TL++ ++ ++D DL M Y V DA YN L+ GC
Sbjct: 221 LFSSLRRRGVAPDRVTYSTLMSGLVKHDQLDNALDLLDEMPDYGVQADAVCYNALLSGCF 280
Query: 168 VSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ E A KV++++++ P L T+ ++ GLC R EA ++ M+ N +PD
Sbjct: 281 KTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMV-ANNHQPD 339
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI GLC G++ A +MV+ + +D
Sbjct: 340 TVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLD 374
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEM----LKRRLQPTLVTFGTLIYGLCLELRVD 208
+P S+N L+ V +RR +A F + RRL P L T+ ++ LC VD
Sbjct: 157 NPGIRSHNALLDAFVRARRYSEADAFFASLSHGACGRRLAPNLQTYNIILRSLCARGDVD 216
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
A+ L + R V PD +++L+ GL +L AL +EM ++ DA
Sbjct: 217 RAVSLFSSLRR-RGVAPDRVTYSTLMSGLVKHDQLDNALDLLDEMPDYGVQADA 269
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P +I F NV+ + +A + +A VFDE+ ++ TV SFNTL++ G ++
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFR 304
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L +ME + V PD +++ L++G RL++ +FDEM R L P VTF TLI G C
Sbjct: 305 LKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQC 364
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+VD ALK MM V+PD + +LI GLC VG+L A EM + ++ D
Sbjct: 365 KGGKVDLALK-NFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPD 422
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 12/220 (5%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + R ++ ++ +I+ ++ +E + L + V P+ F +I+ +
Sbjct: 275 PKRGLRPTVVSFNTLISGCCKSGDVEEGFR-LKGVMESEGVCPDVFTFSALINGLCKEGR 333
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L+ +FDEM + +F TL++ GK+D FQ+M + V PD +YN
Sbjct: 334 LDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G L++A ++ +EM L+P +TF TLI G C + ++ AL++K M+
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVE-E 452
Query: 222 NVKPDAQVFASLIKGLCAVGELS---------LALGFKEE 252
++ D F +LI GLC G + L+ GFK +
Sbjct: 453 GIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPD 492
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM--LTCGKIDRMTDLF 145
++F +IS Y + A+Q F ++ ++ LL + L +I+R L+
Sbjct: 177 LVFDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALY 236
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
++++ P +N+LMHG + + +A VFDE+ KR L+PT+V+F TLI G C
Sbjct: 237 LEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKS 296
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
V+E +LK +M V PD F++LI GLC G L
Sbjct: 297 GDVEEGFRLK-GVMESEGVCPDVFTFSALINGLCKEGRL 334
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
AQ ++P +L+ Y+ +I L + E +++++++ + + P++I F +I +
Sbjct: 381 AQGVRP---DLVTYNALINGLCKVGDLKEARRLVNEMTA-SGLKPDKITFTTLIDGCCKD 436
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSY 159
+E AL++ M ++ +F L++ + G++ D L ++ PD +Y
Sbjct: 437 GDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTY 496
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ ++ +K+ EM P +VT+ L+ GLC + ++ A L + M+
Sbjct: 497 TMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLN 556
Query: 220 VYNVKPDAQVFASLIKG 236
V V P+ + L+ G
Sbjct: 557 V-GVAPNDITYNILLDG 572
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 10/213 (4%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L Y+ ++ L R ++ HQ+ + V P+ + +I Y + ++E+A +VF
Sbjct: 158 LYSYNSLLGVLVRVNSIKLAEEFFHQIVKENVVPPDVSTYTTMIRGYCKMGMIENAKKVF 217
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVV 168
D M+ V+ + ++NT++N G ++ +F M + P+ +Y L+ G
Sbjct: 218 DVMT---VKPNLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCK 274
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE+A K +EM+ R +P +T+ +IYGLC+ RVDEA K+ MR+ K +
Sbjct: 275 KGELEEAKKCMNEMMNRGCRPNELTYNAMIYGLCINGRVDEA-KMLMAKMRLNGFKDNVS 333
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
S++KGLC VG+ A+G+ +RN +E +
Sbjct: 334 THKSMLKGLCVVGKFDQAVGY----LRNVMEAN 362
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 101/206 (49%), Gaps = 6/206 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L F+ N+ + ++ L FD+ L + + + P+ + VI+ + +
Sbjct: 325 LNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNV-MEANMNPDVKSYEVVINGFCKIGKS 383
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A+ + EM + ++ TV SFN + ++ G++DR L + M + P+ SYN +
Sbjct: 384 DEAISLLKEMRARGLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTI 443
Query: 163 MHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RV 220
+ G C+ R++D + D M++ + L+ G C E V+ +++ +M+ +
Sbjct: 444 ICGLCMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 503
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA 246
Y + ++ F+ L+K LCA G+++ A
Sbjct: 504 YVIGLES--FSVLVKQLCAKGKVTEA 527
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 35/204 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NLL Y+ +I + + + + ++ +P + + +I Y + LE A +
Sbjct: 225 NLLAYNTMINGFCKKGDMESARLVFDRMMSGEDCLPNHVTYTTLIDGYCKKGELEEAKKC 284
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+EM M + P+ +YN +++G ++
Sbjct: 285 MNEM----------------------------------MNRGCRPNELTYNAMIYGLCIN 310
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+++A + +M + + T +++ GLC+ + D+A+ ++M N+ PD +
Sbjct: 311 GRVDEAKMLMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEA-NMNPDVKS 369
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+ +I G C +G+ A+ +EM
Sbjct: 370 YEVVINGFCKIGKSDEAISLLKEM 393
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ A+ + N+ VKS+ ++N GK D L + M + + P S+N
Sbjct: 348 FDQAVGYLRNVMEANMNPDVKSYEVVINGFCKIGKSDEAISLLKEMRARGLKPTVFSFNA 407
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL-ELRVDEALKLKEDMMRV 220
+ V + L+ A + +M + P V++ T+I GLC+ + R+ + L + M+R
Sbjct: 408 VFRILVENGELDRAILLLKQMPQMDCLPNFVSYNTIICGLCMAKGRMQDVEDLVDRMIRS 467
Query: 221 -YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+N+ D +++ L+KG C G + + EMV K
Sbjct: 468 GHNL--DFTMYSCLLKGYCEEGNVENVMQIAHEMVTKK 503
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 7/178 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + DE +L +++ + P F V L+ A+ + +M
Sbjct: 370 YEVVINGFCKIGKSDEAISLLKEMRARG-LKPTVFSFNAVFRILVENGELDRAILLLKQM 428
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP----DACSYNILMHGCVVS 169
+ S+NT++ + C RM D+ ++++ + D Y+ L+ G
Sbjct: 429 PQMDCLPNFVSYNTIICGL--CMAKGRMQDVEDLVDRMIRSGHNLDFTMYSCLLKGYCEE 486
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+E+ ++ EM+ ++ L +F L+ LC + +V EA KL + R V D+
Sbjct: 487 GNVENVMQIAHEMVTKKYVIGLESFSVLVKQLCAKGKVTEAEKLFDTCSRCPAVDVDS 544
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 118/215 (54%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ + LKP +Y Y+ II+ L + E +Q+L +K + R+ P+ +++ +IS +G+
Sbjct: 314 QRKGLKPNQYT---YNSIISFLCKTGRVVEAEQVLRVMK-NQRIFPDNVVYTTLISGFGK 369
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ + ++FDEM + ++ ++++ + GK+ LF +++ K + PD +
Sbjct: 370 SGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVT 429
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G + +++A+ + ++M+++ L P +VT+ L+ GLC VD A +L +M
Sbjct: 430 YTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMS 489
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++P+ + +LI GLC VG + A+ EEM
Sbjct: 490 E-KGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 108/207 (52%), Gaps = 3/207 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N + Y++I+ L + E +L Q++ V P+ + + ++ Y + L L+
Sbjct: 250 WNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNV-PDVVSYSVIVDGYCQVEQLGKVLK 308
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+ +E+ ++ ++N++++ + G++ + ++M+ + + PD Y L+ G
Sbjct: 309 LMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFG 368
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S + +K+FDEM ++++ P VT+ ++I+GLC +V EA KL +M+ +KPD
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS-KGLKPDE 427
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C GE+ A +MV
Sbjct: 428 VTYTALIDGYCKAGEMKEAFSLHNQMV 454
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 102/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L + D ++LH++ + + P + +I+ + +E A+++
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMS-EKGLQPNVCTYNALINGLCKVGNIEQAVKL 519
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM ++ T+++A G++ + +L +IM +K + P ++N+LM+G +
Sbjct: 520 MEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCM 579
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S LED ++ ML + + P TF +L+ C+ + +++ + M V PD
Sbjct: 580 SGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGM-HAQGVVPDTN 638
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LIKG C + A +EMV + A
Sbjct: 639 TYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTA 672
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 71/255 (27%)
Query: 54 YDLIITKLGRA-------KMFDEVQQ------------ILHQLKHDTRVV---------- 84
Y +I+ G++ K+FDE+++ ++H L +VV
Sbjct: 360 YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML 419
Query: 85 -----PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
P+E+ + +I Y +A ++ A + ++M + V ++ L++ + CG++D
Sbjct: 420 SKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVD 479
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM---------------- 182
+L M EK + P+ C+YN L++G +E A K+ +EM
Sbjct: 480 IANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIM 539
Query: 183 -------------------LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
L + LQPT+VTF L+ G C+ +++ +L + M+ +
Sbjct: 540 DAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLD-KGI 598
Query: 224 KPDAQVFASLIKGLC 238
P+A F SL+K C
Sbjct: 599 MPNATTFNSLMKQYC 613
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH 164
A +VF E S V S+N +L+ + GK+ L ME + PD SY++++
Sbjct: 236 AFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-- 222
G +L K+ +E+ ++ L+P T+ ++I LC RV EA E ++RV
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEA----EQVLRVMKNQ 351
Query: 223 -VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD V+ +LI G G +S+ +EM R KI D
Sbjct: 352 RIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPD 391
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y+ +I L + ++ +++ ++ P+ I + ++ Y + +
Sbjct: 491 KGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDL-AGFFPDTITYTTIMDAYCKMGEMA 549
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNA----------------MLTCGKIDRMTDLFQIM 148
A ++ M +Q T+ +FN L+N ML G + T +M
Sbjct: 550 KAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLM 609
Query: 149 EKY--------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
++Y V PD +YNIL+ G +R +++AW + EM+++
Sbjct: 610 KQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFS 669
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
T ++ +LI G + +EA KL E+ MR + + +++
Sbjct: 670 LTAASYNSLIKGFYKRKKFEEARKLFEE-MRTHGFIAEKEIY 710
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 129/242 (53%), Gaps = 13/242 (5%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQ 72
P + +L N + N+E L+ FR+ NL ++ II LGRA + +
Sbjct: 8 PSIDHELVYNVLHSAKNSE-HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARC 66
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
IL + + +E ++ +I YG+A +++ ++++F +M V+RT+KS++ L +
Sbjct: 67 ILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVI 125
Query: 133 LTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L G+ F +++ + + P ++N++M G +S ++E A + F++M R + P +
Sbjct: 126 LRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDV 185
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
VT+ T++ G C +++EA K + M+ N++P + +LIKG +V + AL F E
Sbjct: 186 VTYNTMVNGYCRVKKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVE 244
Query: 252 EM 253
EM
Sbjct: 245 EM 246
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 72/278 (25%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA----- 106
+ ++L+ L AK + Q ++ +I GRA L HA
Sbjct: 10 IDHELVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILL 69
Query: 107 ------------------------------LQVFDEMSSFNVQRTVKSFNTL-------- 128
+++F +M V+RT+KS++ L
Sbjct: 70 DMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRG 129
Query: 129 --------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYN 160
N ML+ GK++ F+ M+ + + PD +YN
Sbjct: 130 RYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYN 189
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+++G +++E+A K F EM R ++PT+VT+ TLI G RVD+AL+ E+ M+
Sbjct: 190 TMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEE-MKG 248
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +KP+A +++L+ GLC ++S A +EMV I
Sbjct: 249 FGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ R K +E ++ ++K + P + + +I Y ++ AL+
Sbjct: 184 DVVTYNTMVNGYCRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGYVSVDRVDDALRF 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM F ++ +++TLL + K+ + ++++KY++P D + L+ G
Sbjct: 243 VEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQC 302
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRVY 221
+ L+ A V M++ + +G LI C D+A+KL K+ ++R
Sbjct: 303 KAGDLDAAANVLKAMIRLSVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDIILRPQ 362
Query: 222 N-VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ + ++ + LI+ LC G+ + A E +VR
Sbjct: 363 STLHMESSAYNPLIEYLCNNGQTAKA----EALVR 393
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ +++ Y ++ L A+ +D+V+ + ++ D + VP E+ F ++ F+ R ++E A
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEVTFDMLVRFFCRGGMVERA 300
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+QV +MS N ++NA+ G++D D M Y +PD SY ++ G
Sbjct: 301 IQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRG 360
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R E A ++ EM+++ P VTF T I LC + +++A+KL E +M Y
Sbjct: 361 LCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE-LMPEYGCSV 419
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ +L+ G C G + AL
Sbjct: 420 GIVTYNALVHGFCVQGRVDSAL 441
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEK 150
+++ Y R L+ A ++ ++S V ++ ++ + G++ D + L ++++
Sbjct: 114 TLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQR 170
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
P +Y +L+ S +A V DEM + P +VT+ +I G+C E RVD+A
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 230
Query: 211 LKLKEDMMRV--YNVKPDAQVFASLIKGLCA 239
KE + R+ Y +PD + +++KGLCA
Sbjct: 231 ---KEILNRLSSYGFQPDIVSYTTVLKGLCA 258
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYG 98
P+ F YN L + R D ++++ + V P+ + +I
Sbjct: 103 SGAPVDVFAYNTL-----VAGYCRYGRLDAARRLIASMP----VPPDAYTYTPIIRGLCD 153
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDAC 157
R R+ + AL + D+M Q +V ++ LL A+ + G + M L ++ K +P+
Sbjct: 154 RGRVGD-ALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIV 212
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN++++G R++DA ++ + + QP +V++ T++ GLC R D+ L +M
Sbjct: 213 TYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM 272
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V P+ F L++ C G + A+ ++M
Sbjct: 273 VDKKCV-PNEVTFDMLVRFFCRGGMVERAIQVLQQM 307
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 93/220 (42%), Gaps = 39/220 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA ++ +++L ++ P E+ F I + L+E A+++
Sbjct: 350 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKN-CPPNEVTFNTFICILCQKGLIEQAIKL 408
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ M + + ++N L++ G++D +LF + P+ +Y L+ G +
Sbjct: 409 IELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLP--CEPNTITYTTLLTGLCHA 466
Query: 170 RRL-----------------------------------EDAWKVFDEMLKRRLQPTLVTF 194
RL E+A ++ ++M++ P L+TF
Sbjct: 467 ERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITF 526
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
TL+ G+ + +EAL+L ++ V D ++S++
Sbjct: 527 NTLLDGITKDCNSEEALELLHGLVS-KGVSLDTITYSSVV 565
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 8/176 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +++ A L+ A ++ M + +FN L++ G ++ +L
Sbjct: 451 PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMEL 510
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q+ME +P+ ++N L+ G E+A ++ ++ + + +T+ +++ L
Sbjct: 511 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSR 570
Query: 204 ELRVDEALKL---KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E R +EA+++ +DM ++P ++ ++ LC E A+ F MV N
Sbjct: 571 EDRTEEAIQMLHAVQDM----GMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSN 622
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R DA +V + + TL+ G C R+D A +L M V PDA +
Sbjct: 89 RTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM----PVPPDAYTY 144
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+I+GLC G + AL ++M++ +
Sbjct: 145 TPIIRGLCDRGRVGDALALLDDMLQRGCQ 173
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 13/230 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
ALQL K + + ++P N + Y++II + +AK+ ++ + Q+ R+
Sbjct: 185 ALQLLKR-------VDGKLVQP---NAVMYNMIIDNMCKAKLVNDAFDLYSQMVA-KRIC 233
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +IS + L +A+ +F++M N+ V +FN L++ GK++ +
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
IM K + PD +YN LM G ++ A +FD M + + + T++ G C
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
VDEA+ L E+ MR + P+ ++SLI GLC +G + AL +EM
Sbjct: 354 IKMVDEAINLFEE-MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEM 402
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +++++ + ++ + +L + D + P+ + + +++ Y + A +
Sbjct: 270 NVYTFNILVDGFCKEGKVNDAKVVLAIMMKDD-IKPDVVTYNSLMDGYCSINKVNKAKDI 328
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD M+S V V+ + T++N +D +LF+ M + + P+ +Y+ L+ G
Sbjct: 329 FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCK 388
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+ A K+ DEM R P +VT+ +++ LC VD+A+ L ++ + ++PD
Sbjct: 389 LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNL-KDQGIRPDMY 447
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LIKGLC G L A E+++ +D
Sbjct: 448 TYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLD 480
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 69 EVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+ Q LH HD V +++ + +I+ + + ALQ+ + VQ
Sbjct: 146 HIHQALHF--HDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVM 203
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N +++ M ++ DL+ Q++ K + PD +YN L+ G +L A +F++M
Sbjct: 204 YNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMK 263
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K + P + TF L+ G C E +V++A + MM+ ++KPD + SL+ G C++ ++
Sbjct: 264 KENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKD-DIKPDVVTYNSLMDGYCSINKV 322
Query: 244 SLALGFKEEMVRNKI 258
+ A + M +
Sbjct: 323 NKAKDIFDSMASGGV 337
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++ + KM DE + +++ +++P + + ++I + + +AL++
Sbjct: 340 NVQIYTTMVNGFCKIKMVDEAINLFEEMRC-RKIIPNVVTYSSLIDGLCKLGRIFYALKL 398
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM + +++++L+A+ +D+ L + ++ + PD +Y IL+ G
Sbjct: 399 VDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQ 458
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S RLEDA VF+++L + + + +I G C + D+AL L M
Sbjct: 459 SGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKM 507
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 20/237 (8%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH---DTRVV 84
+ N PNPN P ++ LH+ DE ++ H
Sbjct: 10 VISNFTPNPNFIGLFPSSIRLFSQLHHKQ-----------DEENNLISSFNHLLLHKNPT 58
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P F ++S +A+ AL + +M ++ +FN L+N G +
Sbjct: 59 PPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSI 118
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +I++K P A ++N L+ G + + A D+++ + V++GTLI GLC
Sbjct: 119 FAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCK 178
Query: 204 ELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R+ AL+L + RV V+P+A ++ +I +C ++ A +MV +I
Sbjct: 179 VGRITAALQL---LKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 232
>gi|224142259|ref|XP_002324476.1| predicted protein [Populus trichocarpa]
gi|222865910|gb|EEF03041.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 136/266 (51%), Gaps = 30/266 (11%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L + + L+ DP + L+LF N +Q + FR++ Y + I KLG AKM+ E+
Sbjct: 129 LCNNITLEDDPLVCLELF--------NWASQQHR-FRHDASTYHVTIKKLGIAKMYQEMD 179
Query: 72 QILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSS---FNVQRTVKSF 125
+++QL VP E ++ ++I ++ AR L A+ +F M S + + ++K++
Sbjct: 180 DVVNQL----LAVPHIGNEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTY 235
Query: 126 NTLLNAMLTCGKIDRMTDLF---------QIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176
N LL AML+ G+ + ++ Q+++ V PD S N ++ G +S + DA
Sbjct: 236 NILLTAMLSRGRNSYINHMYMETMRCLFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDAL 295
Query: 177 KVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+VF +M + + P ++ L++GLC + R + A +L ++M V + + F SL+
Sbjct: 296 RVFHQMGVVYKCLPNSFSYDYLVHGLCAQGRTNNARELFDEMKEKGFVLSN-KSFNSLVN 354
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
L GE+ A+ + EM+ +D
Sbjct: 355 ALALGGEVGEAVNYLWEMIDKHRSVD 380
>gi|125553201|gb|EAY98910.1| hypothetical protein OsI_20865 [Oryza sativa Indica Group]
Length = 440
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 6/184 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++ +L RA++F V +L L +R P +F VI G A + A+ VF + +
Sbjct: 66 VLYRLARARLFPLVPPLLAALH--SRGAPLRPTVFAAVIDHLGAASCPDAAVGVFRTVPA 123
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
F + +F++LLNA+++ G+ D D+ + K V +A SYNI++ G +
Sbjct: 124 F-CSHSAATFHSLLNALVSNGRTDAARDMLPLAPKLGVRLNAVSYNIILKGVCLRDGFMG 182
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A V DEML R ++PT+VTF TL+ C E + A +L ++M R V P+A +A L+
Sbjct: 183 ARGVLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLIDEMAR-RGVAPNAATYALLM 241
Query: 235 KGLC 238
+GLC
Sbjct: 242 RGLC 245
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDACSYNIL 162
A V DEM S V+ TV +FNTL+ + G++ +R+ D ++ + V+P+A +Y +L
Sbjct: 183 ARGVLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLID--EMARRGVAPNAATYALL 240
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
M G + R DA K+ +M R Q +V +G L+ R +A ++E MR
Sbjct: 241 MRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMSS---RARRGDADGVRELLSAMRK 297
Query: 221 YNVKPDAQVFASLIKGLCAVG 241
+KPD + LI+ LC G
Sbjct: 298 RKLKPDDASYNILIRCLCDAG 318
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
+M Q V ++ L+++ G D + +L M K + PD SYNIL+ +
Sbjct: 259 DMEYRGCQADVVNYGVLMSSRARRGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAG 318
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R ++A + EM R P T+ L+ G C D L++ MM + P A+ F
Sbjct: 319 RADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLRVFNAMMASGHC-PQARTF 377
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L +GL G+ A E+M R ++ +DA
Sbjct: 378 RHLARGLGEDGKAEEAFFVLEQMARREMSLDA 409
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+ A +F E+ ++ TV SFNTL+N G +D+ L + +ME V PD +Y++
Sbjct: 241 INEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G +L+DA K+F EM R L P VTF TLI G C+ R D +++ + M+R
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-K 359
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VKPD + +LI GLC VG+L A EM + ++ D
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY---GRARLLEHA 106
++ Y ++I L + D+ ++ ++ D +VP ++ F +I+ + GRA L
Sbjct: 294 DVFTYSVLINGLCKEGQLDDANKLFLEMC-DRGLVPNDVTFTTLINGHCVTGRADL---G 349
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHG 165
++++ +M V+ V ++NTL+N + G + L ++ ++ + PD +Y +L+ G
Sbjct: 350 MEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDG 409
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C LE A ++ EM+K ++ V F LI G C E +V EA + +M+ +KP
Sbjct: 410 CCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKP 468
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
D + +I G C G++ +EM
Sbjct: 469 DDATYTMVIHGFCKKGDVKTGFKLLKEM 496
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R ++ ++ +I ++ D+ + L + + RV P+ + +I+ + L+
Sbjct: 254 RGLRPTVVSFNTLINGYCKSGNLDQGFR-LKRFMMENRVFPDVFTYSVLINGLCKEGQLD 312
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++F EM + +F TL+N G+ D +++Q ++ K V PD +YN L+
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G L +A K+ EM +R L+P T+ LI G C E ++ AL+++++M++ +
Sbjct: 373 NGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVK-EGI 431
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D F +LI G C G++ A EM+ I+ D
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ- 146
++F +++ Y + A+Q F + N+Q S L + ++ ++
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
I++ PD C +N+LMH ++ +A +F E+ KR L+PT+V+F TLI G C
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275
Query: 207 VDEALKLKEDMM--RVYNVKPDAQVFASLIKGLCAVGELSLA 246
+D+ +LK MM RV+ PD ++ LI GLC G+L A
Sbjct: 276 LDQGFRLKRFMMENRVF---PDVFTYSVLINGLCKEGQLDDA 314
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ Y+ +I L + E ++++ ++ + P++ + +I + LE
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG-LKPDKFTYTMLIDGCCKEGDLE 417
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILM 163
AL++ EM ++ +F L++ G+ I+ L +++E + PD +Y +++
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG ++ +K+ EM P +VT+ L+ GLC + ++ A L + M+ + V
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL-GV 536
Query: 224 KPDAQVFASLIKGLCAVG 241
PD + L++G C G
Sbjct: 537 VPDDITYNILLEGHCKHG 554
>gi|255660944|gb|ACU25641.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 481
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 48/278 (17%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQ 72
P +L N N+E L+ FR+ NL ++ II LGRA + +
Sbjct: 8 PSFDHELVYNVLHGAKNSE-HALQFFRWVERSNLFXHNRETHLKIIEILGRASKLNHARC 66
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL---- 128
IL + + +E ++ +I YG+A +++ ++++F +M V RT+KS++ L
Sbjct: 67 ILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVXRTIKSYDALFKVI 125
Query: 129 ------------LNAMLT-------------------CGKIDRMTDLFQIM-EKYVSPDA 156
N ML+ GK++ F M + ++PD
Sbjct: 126 LRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETSNRFFXDMXSREITPDV 185
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN +++G ++E+ K F EM R ++PT+VT+ TLI G RVD+AL L E+
Sbjct: 186 VTYNTMINGYYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBALXLXEE 245
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M+ + +KP+A +++L+ GLC ++S A +EMV
Sbjct: 246 -MKXFGIKPNAITYSTLLPGLCDAEKMSEARSILKEMV 282
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 90/178 (50%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R +E + F EM N++ TV ++ TL+ + ++D
Sbjct: 181 ITPDVVTYNTMINGYYRVBKMEEXEKYFVEMKGRNIEPTVVTYTTLIKGYXSVDRVDBAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + PT + F LI G
Sbjct: 241 XLXEEMKXFGIKPNAITYSTLLPGLCDAEKMSEARSILKEMVXKYXAPTDNSIFMRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ ++ +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKVGDLDAAADVJKAMIRL-SIPTEAGHYGVLIEXYCKAGQYDKAVKLLDKVIEKDI 357
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 7/210 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+++I + +E ++ ++ V P F +I Y + L + A V DE
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDE 333
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + + T ++N + A+ G+ID D +++ +PD SYN LMHG + +
Sbjct: 334 MLNAGIYPTTSTYNIYICALCDFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMGKF 390
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A +FD++ + P++VT+ TLI GLC ++ A +LKE+M + PD + +
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTT 449
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+KG G LS+A +EM+R I+ D
Sbjct: 450 LVKGFVKNGNLSMATEVYDEMLRKGIKPDG 479
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ I L D+ +++L + P+ + + ++ Y + A +FD++
Sbjct: 346 YNIYICALCDFGRIDDARELLSSM-----AAPDVVSYNTLMHGYIKMGKFVEASLLFDDL 400
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++ ++ ++NTL++ + G ++ L + M + + PD +Y L+ G V + L
Sbjct: 401 RAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNL 460
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDMMRVYNVKPDAQV 229
A +V+DEML++ ++P + T G ELR+ D+A +L E+M+ + PD +
Sbjct: 461 SMATEVYDEMLRKGIKPDGYAYTTRAVG---ELRLGDSDKAFRLHEEMVATDHHAPDLTI 517
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
+ I GLC VG L A+ F+ ++ R
Sbjct: 518 YNVRIDGLCKVGNLVKAIEFQRKIFR 543
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P I F ++ +A LE +++ EM N++ + ++N L+N GK++
Sbjct: 234 IMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR 293
Query: 143 DLFQIMEKY---VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
M + V+P S+N L+ G +DAW V DEML + PT T+ I
Sbjct: 294 RFHGDMRRSGFAVTP--YSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYIC 351
Query: 200 GLCLELRVDEALKLKEDM------------------------------MRVYNVKPDAQV 229
LC R+D+A +L M +R ++ P
Sbjct: 352 ALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVT 411
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC G L A KEEM
Sbjct: 412 YNTLIDGLCESGNLEGAQRLKEEMT 436
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T++ L G+ +L+ +++ K + P +Y +L++G + RLE A++ EM
Sbjct: 552 TYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM 611
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLC 238
KR ++P ++T L+YG+C +DEA K++E+ + P+ + LI C
Sbjct: 612 KKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE-----GIPPNKYSYTMLISKNC 666
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + +EM+ +IE D
Sbjct: 667 DFEKWEEVVKLYKEMLDKEIEPDG 690
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +Y ++ G + + + + A ++DEML++RL P+++T+ LIYG R+++A +
Sbjct: 548 PDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQY 607
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+M + V+P+ +L+ G+C G + A
Sbjct: 608 STEMKK-RGVRPNVMTHNALLYGMCKAGNIDEA 639
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
Y + + E L F++M +V++ N +L + +++ + +++ M E + P
Sbjct: 178 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 237
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++N ++ C + LE K++ EM +R ++ + VT+ LI G +++EA +
Sbjct: 238 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 297
Query: 216 DMMRV-YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DM R + V P + F LI+G C G A G +EM+ I
Sbjct: 298 DMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDEMLNAGI 339
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+ A +F E+ ++ TV SFNTL+N G +D+ L + +ME V PD +Y++
Sbjct: 241 INEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G +L+DA K+F EM R L P VTF TLI G C+ R D +++ + M+R
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-K 359
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VKPD + +LI GLC VG+L A EM + ++ D
Sbjct: 360 GVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY---GRARLLEHA 106
++ Y ++I L + D+ ++ ++ D +VP ++ F +I+ + GRA L
Sbjct: 294 DVFTYSVLINGLCKEGQLDDANKLFLEMC-DRGLVPNDVTFTTLINGHCVTGRADL---G 349
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHG 165
++++ +M V+ V ++NTL+N + G + L ++ ++ + PD +Y +L+ G
Sbjct: 350 MEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDG 409
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C LE A ++ EM+K ++ V F LI G C E +V EA + +M+ +KP
Sbjct: 410 CCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKP 468
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
D + +I G C G++ +EM
Sbjct: 469 DDATYTMVIHGFCKKGDVKTGFKLLKEM 496
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 110/218 (50%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R ++ ++ +I ++ D+ + L + + RV P+ + +I+ + L+
Sbjct: 254 RGLRPTVVSFNTLINGYCKSGNLDQGFR-LKRFMMENRVFPDVFTYSVLINGLCKEGQLD 312
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++F EM + +F TL+N G+ D +++Q ++ K V PD +YN L+
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G L +A K+ EM +R L+P T+ LI G C E ++ AL+++++M++ +
Sbjct: 373 NGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVK-EGI 431
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D F +LI G C G++ A EM+ I+ D
Sbjct: 432 ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPD 469
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 6/164 (3%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
++F +++ Y + A+Q F + N+Q S L + ++ +
Sbjct: 154 SNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFY 213
Query: 146 Q-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ I++ PD C +N+LMH ++ +A +F E+ KR L+PT+V+F TLI G C
Sbjct: 214 EEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKS 273
Query: 205 LRVDEALKLKEDMM--RVYNVKPDAQVFASLIKGLCAVGELSLA 246
+D+ +LK MM RV+ PD ++ LI GLC G+L A
Sbjct: 274 GNLDQGFRLKRFMMENRVF---PDVFTYSVLINGLCKEGQLDDA 314
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 93/192 (48%), Gaps = 3/192 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ Y+ +I L + E ++++ ++ + P++ + +I + LE
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG-LKPDKFTYTMLIDGCCKEGDLE 417
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILM 163
AL++ EM ++ +F L++ G+ I+ L +++E + PD +Y +++
Sbjct: 418 SALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVI 477
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG ++ +K+ EM P +VT+ L+ GLC + ++ A L + M+ + V
Sbjct: 478 HGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL-GV 536
Query: 224 KPDAQVFASLIK 235
PD + L++
Sbjct: 537 VPDDITYNILLE 548
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 120/241 (49%), Gaps = 18/241 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
Q+ P +A++LF + + + + PL ++ ++ LG+++ + ++ L+
Sbjct: 140 QRRPDIAVRLFLSLHRSHRVVQDLPL---------FNSLLDALGKSRHASKAASLVRALE 190
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
R P+ + + + + RA+ AL + +M+ V T ++N +L G+I
Sbjct: 191 R--RFPPDVVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQI 248
Query: 139 DRMTDLFQIMEK------YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+ F M+K PD SY ++HG V+ +L+ A K+FDEM K P++
Sbjct: 249 QHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVA 308
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ LI +C + V++A+ + +DM+R + P+ + LI+GLC VG++ A+ E
Sbjct: 309 TYNALIQVICKKGNVEDAVTVFDDMVR-KDYMPNVVTYTVLIRGLCHVGKIDRAMKLMER 367
Query: 253 M 253
M
Sbjct: 368 M 368
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II LG A D+ +++ ++ + P + +I + +E A+ V
Sbjct: 271 DIVSYTTIIHGLGVAGQLDKARKLFDEMSKEG-CTPSVATYNALIQVICKKGNVEDAVTV 329
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD+M + V ++ L+ + GKIDR L + M+ + P +YN+L+
Sbjct: 330 FDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFE 389
Query: 169 SRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDE 209
+E A +F+ M K P T+ +I + + R ++
Sbjct: 390 EGEIEKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAED 431
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 14/245 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
S +L S L + P A+ +F N+ + KP ++ Y ++ L R K F
Sbjct: 45 SRTKLMSTLIRKGKPHEAVTIF-------NSLTEEGHKP---TIITYTTLVAALTRLKRF 94
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ + +L +++ + V P+ I+F +I+ + + + A+++F +M + T +FNT
Sbjct: 95 NSIPSLLSKVEENG-VKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNT 153
Query: 128 LLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L+ G+ L ++M + V P+ +YNIL+ LE+AW V +M+
Sbjct: 154 LIKGFGIVGRPHEAMKLLEMMIQDGNVKPNERTYNILIQAWCTKNELEEAWNVMHKMVNS 213
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKPDAQVFASLIKGLCAVGELS 244
+QP +VT+ TL D A +L M + N VKP+ + +I+G C G ++
Sbjct: 214 GMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMT 273
Query: 245 LALGF 249
AL F
Sbjct: 274 EALRF 278
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 103/218 (47%), Gaps = 9/218 (4%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ-ILHQLKHDTRVVPEEIIFCNVISF 96
N+ QP +++ Y+ + + D ++ IL +++ +V P E +I
Sbjct: 212 NSGMQP------DIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRG 265
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
Y + + AL+ +M V FN+L+ L D + + +ME++ + PD
Sbjct: 266 YCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPD 325
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y+ +M+ S +++ ++FD+M+K ++P + + L G + D+A L
Sbjct: 326 VVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLN 385
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
M + Y ++ + +F ++I G CA G++ AL E+M
Sbjct: 386 SMTK-YGLQANVVIFTTIISGWCAAGKMDCALRLYEKM 422
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ +F+ ++ + T+ ++ TL+ A+ + + + L ++ E V PD+ +N ++
Sbjct: 61 EAVTIFNSLTEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMI 120
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ S ++ +A K+F +M + +PT TF TLI G + R EA+KL E M++ NV
Sbjct: 121 NAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMKLLEMMIQDGNV 180
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KP+ + + LI+ C EL A +MV + ++ D
Sbjct: 181 KPNERTYNILIQAWCTKNELEEAWNVMHKMVNSGMQPD 218
>gi|115465257|ref|NP_001056228.1| Os05g0548600 [Oryza sativa Japonica Group]
gi|113579779|dbj|BAF18142.1| Os05g0548600 [Oryza sativa Japonica Group]
gi|222632454|gb|EEE64586.1| hypothetical protein OsJ_19438 [Oryza sativa Japonica Group]
Length = 440
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 6/184 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++ +L RA++F V +L L +R P +F VI G A + A+ VF + +
Sbjct: 66 VLYRLARARLFPLVPPLLAALH--SRGAPLRPTVFAAVIDHLGAASRPDAAVGVFRTVPA 123
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
F + +F++LLNA+++ G+ D D+ + K V +A SYNI++ G +
Sbjct: 124 F-CSHSAATFHSLLNALVSNGRTDAARDMLPLAPKLGVRLNAVSYNIILKGACLRDGFMG 182
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A V DEML R ++PT+VTF TL+ C E + A +L ++M R V P+A +A L+
Sbjct: 183 ARGVLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLIDEMAR-RGVAPNAATYALLM 241
Query: 235 KGLC 238
+GLC
Sbjct: 242 RGLC 245
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDACSYNIL 162
A V DEM S V+ TV +FNTL+ + G++ +R+ D ++ + V+P+A +Y +L
Sbjct: 183 ARGVLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLID--EMARRGVAPNAATYALL 240
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
M G + R DA K+ +M R Q +V +G L+ R +A ++E MR
Sbjct: 241 MRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMSS---RARHGDADGVRELLSAMRK 297
Query: 221 YNVKPDAQVFASLIKGLCAVG 241
+KPD + LI+ LC G
Sbjct: 298 RKLKPDDASYNILIRCLCDAG 318
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
+M Q V ++ L+++ G D + +L M K + PD SYNIL+ +
Sbjct: 259 DMEYRGCQADVVNYGVLMSSRARHGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAG 318
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R ++A + EM R P T+ L+ G C D L++ MM + P A+ F
Sbjct: 319 RADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLRVFNAMMASGHC-PQARTF 377
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L +GL G+ A E+M R ++ +DA
Sbjct: 378 RHLARGLGEDGKAEEAFFVLEQMARREMSLDA 409
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 117/220 (53%), Gaps = 6/220 (2%)
Query: 47 FRYNLLHYDLII---TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
F N++ Y+ +I K+GR + IL ++ + +V P + F +I + + L
Sbjct: 261 FWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMV-ENKVSPNSVTFNVLIDGFCKDENL 319
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
AL+VF+EM S ++ TV ++N+L+N + GK++ L +++ + P+ +YN L
Sbjct: 320 SAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNAL 379
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + LE+A ++FD + K+ L P ++TF TL++G C +++EA L++ M+
Sbjct: 380 INGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE-KG 438
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+A + LI G C G++ EM ++ D
Sbjct: 439 FLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADT 478
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 47 FRYNL--LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+RY L L + +++ L + F V+ + ++ ++ P I F VI+ + L
Sbjct: 189 YRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIR-RKISPNLITFNTVINGLCKVGKLN 247
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYN 160
A V D+M + V ++NTL++ G++ +M L +++E VSP++ ++N
Sbjct: 248 KAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFN 307
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+L+ G L A KVF+EM + L+PT+VT+ +L+ GLC E +++EA L ++M+
Sbjct: 308 VLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS 367
Query: 221 YNVKPDAQVFASLIKGLC 238
N+KP+ + +LI G C
Sbjct: 368 -NLKPNVITYNALINGYC 384
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 131/291 (45%), Gaps = 50/291 (17%)
Query: 2 NKAKPTSPFRLASLLRLQKDPKL--ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIIT 59
NK P S + KD L AL++F+ ++Q LKP ++ Y+ ++
Sbjct: 297 NKVSPNSVTFNVLIDGFCKDENLSAALKVFEE-------MQSQGLKP---TVVTYNSLVN 346
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
L +E + +L ++ + + P I + +I+ Y + +LLE A ++FD + +
Sbjct: 347 GLCNEGKLNEAKVLLDEM-LSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLED---- 174
V +FNTLL+ GK++ L ++M EK P+A +YN L+ G ++E+
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465
Query: 175 ---------------------AW----------KVFDEMLKRRLQPTLVTFGTLIYGLCL 203
AW ++ DEML + L+P+ +T+ L+ G C+
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCM 525
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E + AL L++ M + + + LI+G C G+L A G EM+
Sbjct: 526 EGNLRAALNLRKQMEK-EGRWANVVTYNVLIQGYCRKGKLEDANGLLNEML 575
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
V+ EM++R++ P L+TF T+I GLC ++++A + +DM +V+ P+ + +LI G
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDM-KVWGFWPNVVTYNTLIDGY 275
Query: 238 CA---VGELSLALGFKEEMVRNKIEMDA 262
C VG++ A +EMV NK+ ++
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNS 303
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLL 103
K F N Y+ +I R +EV+ +L++++ R V + + N+ IS + +
Sbjct: 437 KGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ--CRGVKADTVTYNILISAWCEKKEP 494
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNIL 162
+ A ++ DEM ++ + ++N LLN G + +L + MEK + +YN+L
Sbjct: 495 KKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVL 554
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ G +LEDA + +EML++ L P T+
Sbjct: 555 IQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 120/241 (49%), Gaps = 18/241 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
Q+ P +A++LF + + + + PL ++ ++ LG+++ + ++ L
Sbjct: 147 QRRPDIAVRLFLSLHRSHRVAQDLPL---------FNSLLDALGKSRHASKAASLVRAL- 196
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ R P+ + + + + R + AL + +M+ + T ++N +L G++
Sbjct: 197 -ERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQL 255
Query: 139 DRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+ F M+K S PD SY ++HG V+ +L+ A K+FDEM K PT+
Sbjct: 256 QHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIA 315
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ LI +C + V++A+ + +DM+R + P+ + LI+GLC VG++ A+ E
Sbjct: 316 TYNALIQVICKKGNVEDAVTVFDDMIR-KDYIPNVVTYTVLIRGLCHVGKIDRAMKLMER 374
Query: 253 M 253
M
Sbjct: 375 M 375
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II LG A D+ +++ ++ + P + +I + +E A+ V
Sbjct: 278 DVVSYTTIIHGLGVAGQLDKARKLFDEMSKEG-CPPTIATYNALIQVICKKGNVEDAVTV 336
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD+M + V ++ L+ + GKIDR L + M+ + P +YN+L+
Sbjct: 337 FDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFE 396
Query: 169 SRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDE 209
++ A +F+ M K P T+ +I + + R ++
Sbjct: 397 EGEMDKALHLFERMSKGEECLPNQDTYNIVISAMFVRKRAED 438
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ +
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM+ + L P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKE-NIRLDDVAYTALISGLCQEG 360
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N + ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQVSGVQPDVYT---YSVLINGLCKESKMDDANXLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLNV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 712
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 10/211 (4%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M + +++ V P+ F +IS + + +++ A +F EM +
Sbjct: 185 ILLKRGRTGM---AHDMFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELY 241
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK---YVSPDACSYNILMHGCVVSRRLE 173
+ V ++NT+++ + GK+ +L M K V P+ SY L+ G + + ++
Sbjct: 242 SCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEID 301
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE--ALKLKEDMMRVYNVKPDAQVFA 231
+A VF EML R L+P VT+ TLI GL R DE + D ++ PDA F
Sbjct: 302 EALLVFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFS--PDACTFN 359
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LIK C G L A+ +EM+ K+ D+
Sbjct: 360 ILIKAHCDAGHLDAAMKVFQEMLNMKLHPDS 390
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 5/223 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARL 102
K F + + L++ LGRA+ + + L ++ + V ++ F ++I YG A L
Sbjct: 97 KGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYGNAGL 156
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYN 160
+ ++ +F M + +V +FN+LL+ +L G+ D+F M + V+PD+ ++N
Sbjct: 157 FQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSYTFN 216
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-R 219
L+ G + ++ A+ +F EM P +VT+ T+I GLC +V A L M+ +
Sbjct: 217 TLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRAGKVKIAHNLLNGMLKK 276
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V P+ + +L++G C E+ AL EM+ ++ +A
Sbjct: 277 ATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKPNA 319
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ II L RA +L+ LK T V P + + ++ Y + ++ AL
Sbjct: 246 DVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALL 305
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV--SPDACSYNILMHGC 166
VF EM + ++ ++NTL+ + + D + + + SPDAC++NIL+
Sbjct: 306 VFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAH 365
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRV 220
+ L+ A KVF EML +L P ++ LI LCL D+A L KE ++
Sbjct: 366 CDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGK 425
Query: 221 YNVKPDAQVFASLIKGLCAVGE 242
KP A + + + LCA G+
Sbjct: 426 NECKPLAAAYNLMFEYLCANGK 447
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ LKP N + Y+ +I L A +DE++ L T P+ F +I + A
Sbjct: 313 RGLKP---NAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAG 369
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV-------S 153
L+ A++VF EM + + S++ L+ + + D+ LF ++ EK V
Sbjct: 370 HLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCLRNEFDKAETLFNELFEKEVLLGKNECK 429
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALK 212
P A +YN++ + + + A KVF +++KR Q P+ ++ TLI GLC E + A +
Sbjct: 430 PLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRGAQDPS--SYRTLITGLCREGKFKAAYE 487
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R V PD + + LI GL +GE LA + M+R+
Sbjct: 488 LLVLMLRREFV-PDPETYEVLIDGLLKIGEALLAHDTLQRMLRS 530
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 116/209 (55%), Gaps = 3/209 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ Y ++ LG+A + ++ ++ +P+ +++ +IS G+ ++ A
Sbjct: 113 FVLDVFTYSYLMDALGKAGRAAKALEVFSNMQK-AGCMPDTVVYNVLISCLGKQGKVDEA 171
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHG 165
L++ ++M+ + +++N +++ + +CG+ ++ F +M++ SPD +YN L++G
Sbjct: 172 LELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNG 231
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
RR ++A +FDEM + P L TFGTLI L R+++AL+ ++++ +V P
Sbjct: 232 LKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHV-P 290
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
++ ++ +LI G C G++ ++M+
Sbjct: 291 NSYIYNALISGFCRSGQVDKGYELFQDMI 319
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 2/209 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +A D + +LK + P + F ++ F + AL V
Sbjct: 10 DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAV 69
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVV 168
F EM +Q V NTL++ G + + L M + D +Y+ LM
Sbjct: 70 FQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGK 129
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R A +VF M K P V + LI L + +VDEAL+L EDM R + PD +
Sbjct: 130 AGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR-KGIMPDCR 188
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +I L + G A F M R K
Sbjct: 189 TYNIVIDVLSSCGRYEKAYSFFGMMKRRK 217
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L +++ +K + P+ + + +++ + R + A +FDEM
Sbjct: 190 YNIVIDVLSSCGRYEKAYSFFGMMKR-RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 248
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVS 169
+ + +F TL++ T K RM D + + V P++ YN L+ G S
Sbjct: 249 QANKCMPDLTTFGTLID---TLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRS 305
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++ +++F +M++ P +T+ L+ G A++L ++M+R + P
Sbjct: 306 GQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHT-PALAT 364
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI+ L G++ A +EM+ D
Sbjct: 365 YNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPD 396
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 4/150 (2%)
Query: 50 NLLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+L + +I L +A +M D ++Q +K VP I+ +IS + R+ ++ +
Sbjct: 256 DLTTFGTLIDTLAKAGRMEDALEQSARLVKMGH--VPNSYIYNALISGFCRSGQVDKGYE 313
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+F +M + ++ L+ G +L Q M + +P +YN+L+
Sbjct: 314 LFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLS 373
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
++ ++EDA+ +F EM+ + P + T+ L
Sbjct: 374 MAGQVEDAYTLFKEMIAKGFNPDMQTYSAL 403
>gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 23/253 (9%)
Query: 3 KAKP--TSPF----RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDL 56
++KP T+P +A L+ QK ALQ F+ + PN F +N Y
Sbjct: 82 QSKPISTTPVPTHQHIAHLILEQKSASQALQTFRWASNLPN---------FIHNQSTYRA 132
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I KL + F+ V+++L ++ P+E IF ++ GRAR++ ++V D ++ F
Sbjct: 133 LIHKLCSFRRFETVKEVLDEMPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKF 192
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLED 174
++K FN++L+ ++ ID + + ++M VS D ++ ILM G ++ R+ D
Sbjct: 193 GENPSLKIFNSILDVLVK-EDIDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGD 251
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A+K+ M R P V + T+I+ LC +V A L +M V+P F LI
Sbjct: 252 AFKLLQVMKSRGKTPNTVIYNTMIHALCKNGKVGRARSLMNEM-----VEPSDVTFNVLI 306
Query: 235 KGLCAVGELSLAL 247
C L AL
Sbjct: 307 SAYCQEENLVQAL 319
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHA 106
+N + YD +I L ++ +IL ++ I N I YG + E A
Sbjct: 437 WNFMTYDTLIRGLCSGGRMEDGFKILELMEESRGGAGGRISPYNSI-IYGLYKKNQFEEA 495
Query: 107 LQVFDEMSSFNVQRTVKSFNTL-LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
L+ +M + +S L + G R+ D Q++++ P Y L+HG
Sbjct: 496 LEFLTKMEKLFPRAVDRSLRILGFCNEGSIGDAKRVYD--QMIKEGGVPSVLVYVCLIHG 553
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +A+++ +EM+ PT TF LI C + +V ALKL EDM+ P
Sbjct: 554 FCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALKLMEDMVG-RGCLP 612
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D ++ ++ LC G+ A+ +MV I
Sbjct: 613 DMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDI 645
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + V+ +A + ++V + + S V ++NTL+ GK
Sbjct: 331 VPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHR 390
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ + ME K P+ +YNIL G S L+ A +F++M + +T+ TLI GLC
Sbjct: 391 VLKDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLC 450
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQV--FASLIKGLCAVGELSLALGFKEEM 253
R+++ K+ E +M ++ + S+I GL + AL F +M
Sbjct: 451 SGGRMEDGFKILE-LMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKM 502
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+NT+++A+ GK+ R L M + V P ++N+L+ L A + ++
Sbjct: 271 YNTMIHALCKNGKVGRARSL---MNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFS 327
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
P +VT ++ LC RV E +++ E + + V D + +LIKG C +G+
Sbjct: 328 MGFVPDVVTATKVVGILCKAGRVTEGVEVLERVESMGGV-VDVVAYNTLIKGFCMLGKAK 386
Query: 245 LA 246
+
Sbjct: 387 VG 388
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP +++ +I + + + A ++ +EM T +FN L++A GK+
Sbjct: 541 VPSVLVYVCLIHGFCQDGNVREAFELINEMVDHGYFPTAPTFNALISAFCGQGKVGSALK 600
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + M + PD SY+ ++ + A ++F +M+++ + P T+ +++ LC
Sbjct: 601 LMEDMVGRGCLPDMGSYSPMVDALCNKGDFQKAVRLFLQMVEKDILPDYSTWNSML--LC 658
Query: 203 L 203
L
Sbjct: 659 L 659
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 112/210 (53%), Gaps = 9/210 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L +A D+ ++LH++ D V P+ + F +++ +A E A +
Sbjct: 260 DVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSL 318
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
M+ N + + ++NTL++ + +DR DL ++++VS PD +Y+IL G
Sbjct: 319 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDL---VDEFVSSGFVPDVVTYSILADG 375
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+++A+++ EM + P LVT+ TLI GLC + ++A +L E ++ V P
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFV-P 434
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D + ++ GLC G L AL E M++
Sbjct: 435 DVVTYTIIVDGLCKEGRLDKALKMVEGMLK 464
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 23 KLALQLFKN-PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++F+N P+P+ + Y+ II R D + L ++ ++
Sbjct: 212 KDALEIFRNIPSPDA---------------IAYNAIIHGHCRKNDCDGALEFLKEM-NER 255
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+V P+ + +I +A + A ++ EM V +FN++++ + GK +R
Sbjct: 256 KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 315
Query: 142 TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
L +M E+ P C+YN L+ G + ++ A + DE + P +VT+ L G
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
LC R+DEA +L ++M P+ + +LI GLC + A E +V +
Sbjct: 376 LCKRGRIDEAFELVKEMSG-KGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSS 430
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 9/195 (4%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R + Y+ +I+ L + + D + ++ + + VP+ + + + + ++ A
Sbjct: 328 RPSCCTYNTLISGLCKQQNVDRAKDLVDEFV-SSGFVPDVVTYSILADGLCKRGRIDEAF 386
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILM 163
++ EMS + ++NTL++ + K ++ ++++E VS PD +Y I++
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKA---YELLESLVSSGFVPDVVTYTIIV 443
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RL+ A K+ + MLKR P+++T+ L+ GLC RVDEA + ++M+ +
Sbjct: 444 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS-KDC 502
Query: 224 KPDAQVFASLIKGLC 238
DA + SL+ G C
Sbjct: 503 TADALAYVSLVNGYC 517
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I +L + DE +L ++ DT + +E+ + VI +A L+ A ++
Sbjct: 748 NTVTYNIFIDRLCKEGRLDEASSLLSEM--DT--LRDEVSYTTVIIGLCKAEQLDRASKL 803
Query: 110 FDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
EM + + T +FN L++A ++D L +M ++ SP +YN+++
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLC 863
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+++ AW++FDEM R + + V++ LIYGLC + R EAL++ E+M
Sbjct: 864 KLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 913
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 15/238 (6%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P ++ +L+ KDP+ A+ F + F+++ + + L D
Sbjct: 93 PAVVSRVLQRLKDPQTAIVFFVWAGD----------RGFKHSTFTRNCFLQTLLENGSSD 142
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+ + ++ D P+ + VI + ++ A + D+ + V + L
Sbjct: 143 RIPAMFERML-DAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTIL 201
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
A K R+ D +I SPDA +YN ++HG + A + EM +R++
Sbjct: 202 TRAFC---KTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVA 258
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P + T+ LI GLC + D+A ++ +M+ V PD F S++ GLC G+ A
Sbjct: 259 PDVFTYNILIDGLCKASKTDKASEMLHEMVD-RGVTPDTVTFNSIMDGLCKAGKFERA 315
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 35/242 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I+ L + + +++H++ + VV + +I + L+ AL + D M
Sbjct: 681 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 740
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME------------------------ 149
+ V+ ++N ++ + G++D + L M+
Sbjct: 741 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRA 800
Query: 150 ----------KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
K + + ++N+L+ ++RL++A + M++R P+++T+ +I
Sbjct: 801 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVIT 860
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LC +VD+A +L D M V + + + LI GLC G AL EEM + E
Sbjct: 861 CLCKLDKVDKAWELF-DEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCE 919
Query: 260 MD 261
+D
Sbjct: 920 ID 921
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 4/220 (1%)
Query: 36 PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
PN E + N+ Y++++ L + DE L + H VP+ + + +I
Sbjct: 558 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM-HSAGCVPDVVSYNIIID 616
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
+A + A QV D+M + ++NTL+ + D + + M K V P
Sbjct: 617 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 676
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKL 213
D +YN L+ G + RL DA+++ EML+ + T+ T+I LC E + +AL L
Sbjct: 677 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 736
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
D M + V+ + + I LC G L A EM
Sbjct: 737 M-DHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 775
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 1/160 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A + M S V S+N +++ + K + Q+++ + PDA +YN
Sbjct: 589 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 648
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM R +DA + M+K + P VT+ TLI GL R+ +A +L +M+R
Sbjct: 649 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 708
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V + ++I LC G L AL + M + +E +
Sbjct: 709 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 748
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I L +A ++ ++L L + VP+ + + ++ + L+ AL++
Sbjct: 400 NLVTYNTLIDGLCKASKTEKAYELLESLV-SSGFVPDVVTYTIIVDGLCKEGRLDKALKM 458
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY--------- 159
+ M +V ++ L+ + G++D +F +++ K + DA +Y
Sbjct: 459 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 518
Query: 160 -----------------------NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
N LM G RL++ VF++M R P + T+
Sbjct: 519 SSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 578
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ GLC +VDEA E M V PD + +I GL + A ++M++
Sbjct: 579 VMDGLCKHGKVDEAFPFLESMHSAGCV-PDVVSYNIIIDGLFKASKPKEARQVLDQMIQA 637
Query: 257 KIEMDA 262
I DA
Sbjct: 638 GIPPDA 643
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L R DE I ++ + + + ++++ Y ++ + A +V
Sbjct: 470 SVITYTALMEGLCRTGRVDEAHHIFKEMVSKD-CTADALAYVSLVNGYCKSSRTKEAQKV 528
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
D + + +N L++ G++D + ++F+ M + P+ +YNI+M G
Sbjct: 529 VDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 585
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A+ + M P +V++ +I GL + EA ++ + M++ + PDA
Sbjct: 586 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQA-GIPPDAV 644
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ C A+G + M++ ++ D
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPD 677
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N L +L G DR+ +F+ +++ +PD+ +Y++++ +++ A+ + D+
Sbjct: 129 NCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKV 188
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R +P + + L C R+ +AL++ ++ PDA + ++I G C +
Sbjct: 189 RGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI-----PSPDAIAYNAIIHGHCRKNDCD 243
Query: 245 LALGFKEEMVRNKIEMD 261
AL F +EM K+ D
Sbjct: 244 GALEFLKEMNERKVAPD 260
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 124 SFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+++ ++ ++ +ID+ T L + + P+ Y IL + RL+DA ++F +
Sbjct: 162 TYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI 221
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
P + + +I+G C + D AL+ LKE M V PD + LI GLC
Sbjct: 222 P----SPDAIAYNAIIHGHCRKNDCDGALEFLKE--MNERKVAPDVFTYNILIDGLCKAS 275
Query: 242 ELSLALGFKEEMVRNKIEMD 261
+ A EMV + D
Sbjct: 276 KTDKASEMLHEMVDRGVTPD 295
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
++ + + Y ++I L + DE +IL ++ + P + +++ +AR ++HA
Sbjct: 76 YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQT-PSMQAYSSLVRALAKARRVDHA 134
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+FDEM F L+ + GK+ ++ F+ M K+ P+ YN+L+HG
Sbjct: 135 SSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHG 194
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S +LE A +F EM P +VT+ TL+ +C RV+E KL E MR P
Sbjct: 195 LCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFE-AMRAAGYVP 253
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ F++LI GLC GEL AL
Sbjct: 254 NVITFSTLIHGLCRTGELEKAL 275
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y++++ L + ++ + ++K + P+ + + ++ +AR +E ++
Sbjct: 184 NVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS-CSPDVVTYNTLLDAVCKARRVEEGCKL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ M + V +F+TL++ + G++++ ++F ++E P+ +Y L+ G
Sbjct: 243 FEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCR 302
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A ++F++M + + P V + +LI G C +DEA KL +M ++P
Sbjct: 303 AEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIV 362
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F +LI G C +G+L A EM + D+
Sbjct: 363 TFNTLIDGFCKLGKLGRANELVAEMGTKGLAADS 396
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 106/201 (52%), Gaps = 7/201 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
KP +Y Y +I+ L RA+ + +++ ++ + P+ + + ++I+ Y + ++
Sbjct: 287 KPNKYT---YTTLISGLCRAEKVIQARELFEKMTQAC-IPPDAVAYNSLIAGYCKRGSMD 342
Query: 105 HALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +++ EMS +Q T+ +FNTL++ GK+ R +L M K ++ D+C+Y IL
Sbjct: 343 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRIL 402
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + +L++A +V+ +M +++ V+ + + GLC +D+A + E R
Sbjct: 403 IAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE-ATRKSG 461
Query: 223 VKPDAQVFASLIKGLCAVGEL 243
P+ + F L + L +G +
Sbjct: 462 AVPNPETFRILSESLIKLGRV 482
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E + +V +EM + V +FN ++ +++ +++Q M E PD SY+IL
Sbjct: 27 EESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHIL 86
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+HG +L+++ K+ EM+ R P++ + +L+ L RVD A L ++M+R +
Sbjct: 87 IHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGH 146
Query: 223 VKPDAQVFASLIKGLCAVGEL 243
PD +F LI GLC G++
Sbjct: 147 -HPDRLMFYELILGLCQAGKV 166
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y II L + +E ++L ++ P+ F V+ + R+ +E A +V
Sbjct: 9 NVFTYSSIIKSLVKEAKPEESYKVLEEM-MAAGCNPDVFAFNGVMQGFARSNNMEKAREV 67
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ M + S++ L++ + GK+D + L +++ + +P +Y+ L+
Sbjct: 68 YQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAK 127
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+RR++ A +FDEM++ P + F LI GLC +V +A + + M + + +P+
Sbjct: 128 ARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPK-HGCQPNVP 186
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+ L+ GLC+ G+L A EM + D
Sbjct: 187 VYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPD 219
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+K ++ + +Y+ ++ V + E+++KV +EM+ P + F ++ G ++
Sbjct: 3 DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNME 62
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+A ++ + M+ KPD + LI GL +G+L +L EMV
Sbjct: 63 KAREVYQHMVES-GYKPDNVSYHILIHGLAKIGKLDESLKILSEMV 107
>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
Length = 796
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G+A DE +++ D+R VP+ F ++S Y A E L+V+DEM
Sbjct: 173 YNTLIKVYGKAHKLDEAWGYYKEMQ-DSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEM 231
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++ G++D LF+ M+ + P+A +Y+ L+ G + S RL
Sbjct: 232 QKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRL 291
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E K F+EM ++P L TF +LI C R++ LK +D M +N KP+ ++A+
Sbjct: 292 EIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKD-MEAFNYKPNLCIYAA 350
Query: 233 LIKGLCAVGELSLALGFKEEM 253
L+ G L AL F E M
Sbjct: 351 LVDAHAKAGMLDAALEFYERM 371
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D ++ VP F +++ YGR + + +V ++ + T ++NT
Sbjct: 116 DVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLSDLKADKCPMTTVAYNT 175
Query: 128 LLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH---------------------G 165
L+ K+D ++ M+ PD ++N LM G
Sbjct: 176 LIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIG 235
Query: 166 CVVSR--------------RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
C + R RL+ A +F+ M QP V + LI G R++
Sbjct: 236 CSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGT 295
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
K E+ MR ++P FASLI+ C G L L F ++M
Sbjct: 296 KYFEE-MRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDM 336
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 8/211 (3%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
N P P YN+ II + M +E ++ ++ D V P+ + + V+
Sbjct: 72 NRRGCPPSPVTYNV-----IIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYNTVMDGL 125
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDA 156
++ +E AL +F+EM +S NT++ + KID+ +F ME + + PD+
Sbjct: 126 CKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
SY IL+ G + +L +A+K+F ML + P+ VT+ +I+G+CL +DEAL+L +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKS 245
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
MR +P F LI C G++ A
Sbjct: 246 -MRSKGCRPSRFTFNILIDAHCKRGKMDEAF 275
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 18/222 (8%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ + P ++ Y ++I L +A +E ++ ++ D+ + P + + VI
Sbjct: 177 EARDIPPDSWS---YGILIDGLAKAGKLNEAYKLFRRML-DSGITPSAVTYNVVIHGMCL 232
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-------RMTDLFQIMEKYV 152
A L+ AL++F M S + + +FN L++A GK+D RMTD +
Sbjct: 233 AYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHV----- 287
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD +Y+ L+ G R++DA + ++M+KR+ +PT+VT TLI+GLC R+ EA +
Sbjct: 288 -PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEARE 346
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ D M PD + +L+ G C G+ A +MV
Sbjct: 347 VL-DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL+LFK+ ++ +P R+ ++++I + DE ++L ++ D V
Sbjct: 239 ALELFKS-------MRSKGCRPSRFT---FNILIDAHCKRGKMDEAFRLLKRMTDDGHV- 287
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +IS ++ A + ++M + TV + NTL++ + G+I ++
Sbjct: 288 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M SPD +YN L+HG + + E A ++ +M+ R L P +VT+ L+ GLC
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ EA + M+ P+ + +LI G C+ G++ L EMV I D
Sbjct: 408 ANRLPEACGVFA-QMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 105/210 (50%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L +A ++ + + +L H + V P + + ++I A + A ++F +M
Sbjct: 13 YGILIDGLAKAGKLNDARDLFQKLLH-SGVTPSTVAYTSLIHGLCMANSFDDARELFADM 71
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + ++N +++A G ++ DL + M E PD +YN +M G S R+
Sbjct: 72 NRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRV 131
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A +F+EM + P + T+I GLC + ++D+A ++ +M ++ PD+ +
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EARDIPPDSWSYGI 190
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI GL G+L+ A M+ + I A
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSA 220
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRR 171
M+ NV S+ L++ + GK++ DLFQ ++ V+P +Y L+HG ++
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+DA ++F +M +R P+ VT+ +I C ++EA L + M+ +V PD +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYN 119
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
+++ GLC G + AL EM R
Sbjct: 120 TVMDGLCKSGRVEEALLLFNEMER 143
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 97/204 (47%), Gaps = 3/204 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ +I L +A E +++L + + P+ + + ++ + RA E A ++ +M
Sbjct: 329 NTLIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVTYNTLVHGHCRAGQTERARELLSDMV 387
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + V ++ L++ + ++ +F Q+ +P+ +Y L+ G + +++
Sbjct: 388 ARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFAS 232
K+F EM+ + P V +GTL LC R AL+ L+E + + +V+
Sbjct: 448 GGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRF 507
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+ GL G++ +ALGF +MVR
Sbjct: 508 AVDGLLDAGKMEMALGFVRDMVRG 531
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
E+ VSPD+ SY IL+ G + +L DA +F ++L + P+ V + +LI+GLC+ D
Sbjct: 3 ERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+A +L DM R P + +I C G L A ++M+ +
Sbjct: 63 DARELFADMNR-RGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIED 109
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + +I +A L A +F ++ V + ++ +L++ + D
Sbjct: 6 VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF M + P +YN+++ LE+A + +M++ P +VT+ T++ GL
Sbjct: 66 ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C RV+EAL L +M R+ P+ + ++I GLC ++ A EM I D
Sbjct: 126 CKSGRVEEALLLFNEMERL-GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184
Query: 262 A 262
+
Sbjct: 185 S 185
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ +
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLX 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM+ + L P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GNCKEGDLETAFEYRKRMIK-ENIRLDDVAYTALISGLCQEG 360
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N + ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQVSGVQPDVYT---YSVLINGLCKESKMDDANVLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLNV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|356521277|ref|XP_003529283.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 379
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 6/218 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
FR Y+ + +L A+ F V+ IL HQ ++ + E +IS YG++ + +H
Sbjct: 52 FRKKTGIYEDTVRRLAGARRFRWVRDILEHQKQYSD--ISNEGFSARLISLYGKSGMTKH 109
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILM 163
A +VFDEM N RTV S N LL A L K D + +LF+ + +S PD +YN ++
Sbjct: 110 ARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELFRDLPTQLSIKPDLVTYNTII 169
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ A V E+ ++ L P +TF TL+ GL + R +E K+ E M V NV
Sbjct: 170 KAFCEKGSFDSALSVLREIEEKGLSPDSITFNTLLDGLYSKGRFEEGEKVWE-QMSVNNV 228
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + + S + GL V + A+ EM + ++ D
Sbjct: 229 APGVRSYCSKLVGLAEVKKAGEAVELFREMEKVGVKPD 266
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 2/197 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+D VQ++ L + P+ + + +I + + AL V E+ + +FN
Sbjct: 142 YDVVQELFRDLPTQLSIKPDLVTYNTIIKAFCEKGSFDSALSVLREIEEKGLSPDSITFN 201
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
TLL+ + + G+ + +++ M V+P SY + G ++ +A ++F EM K
Sbjct: 202 TLLDGLYSKGRFEEGEKVWEQMSVNNVAPGVRSYCSKLVGLAEVKKAGEAVELFREMEKV 261
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
++P L +I G E +DEA K ++ + PD ++ ++ LC G+
Sbjct: 262 GVKPDLFCINAVIKGFVNEGNLDEAKKWFGEIAKS-EYDPDKNTYSIIVPFLCEKGDFKT 320
Query: 246 ALGFKEEMVRNKIEMDA 262
A+ +E+ N+ +DA
Sbjct: 321 AIEMCKEIFNNRCRVDA 337
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A KVFDEM +R T+++ L+ + D +L D+ ++KPD + ++I
Sbjct: 110 ARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELFRDLPTQLSIKPDLVTYNTII 169
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMDA 262
K C G AL E+ + D+
Sbjct: 170 KAFCEKGSFDSALSVLREIEEKGLSPDS 197
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 113/211 (53%), Gaps = 3/211 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D ++L+++ ++ + P +++ ++ Y + E
Sbjct: 126 RPDVVTYGTLIRGLCDAADVDTAVELLNEM-CESGIEPNVVVYSCLLHGYCKTGRWESVG 184
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VF+EMS ++ V + L++++ GK+ + + +M E+ + P+ +YN+L++
Sbjct: 185 KVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSM 244
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+ +A + M ++ +QP +VT+ TLI GL L +DEA+ L E+MM+ V+P
Sbjct: 245 CKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRP 304
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
D F S+I GLC +G + AL + M N
Sbjct: 305 DLMTFNSVIHGLCKIGWMRQALQVRAMMAEN 335
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 4/231 (1%)
Query: 34 PNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFC 91
P P + P + + Y+ ++ L R D +L + H+ R+ P I +
Sbjct: 39 PLPESPALLSALPSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYT 98
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EK 150
++ R A+ + M V+ V ++ TL+ + +D +L M E
Sbjct: 99 TLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCES 158
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ P+ Y+ L+HG + R E KVF+EM R ++P +V + LI LC +V +A
Sbjct: 159 GIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKA 218
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ DMM ++P+ + LI +C G + AL ++ M ++ D
Sbjct: 219 ARVM-DMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPD 268
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 6/216 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R NL+ ++L+I L R + +++ ++ + + P+ + +I+ + + R +E A
Sbjct: 338 RCNLVAFNLLIGGLLRVHKVKKAMELMDEMA-SSGLQPDSFTYSILINGFCKMRQVERAE 396
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
EM ++ + LL AM G + + DLF M++ DA +Y+ ++HG
Sbjct: 397 SYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAYSTMIHGAF 456
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI--YGLCLELRVDEALKLKEDMMRVYNVKP 225
S + A + +M+ L P VT+ I + +L E + LK+ M P
Sbjct: 457 KSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERV-LKQ--MTASGFVP 513
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D VF SLI+G A G+ L EM + +D
Sbjct: 514 DVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALD 549
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 5/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L R + +++ + + + P + + +I+ + + AL +
Sbjct: 198 DVVMYTALIDSLCRHGKVKKAARVMDMMT-ERGLEPNVVTYNVLINSMCKEGSVREALDL 256
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGC 166
MS VQ V ++NTL+ + + ++D L + M E V PD ++N ++HG
Sbjct: 257 RKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGL 316
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ A +V M + + LV F LI GL +V +A++L ++M ++PD
Sbjct: 317 CKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMAS-SGLQPD 375
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ ++ LI G C + ++ A + EM +E
Sbjct: 376 SFTYSILINGFCKMRQVERAESYLSEMRHQGME 408
>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
Length = 796
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G+A DE +++ D+R VP+ F ++S Y A E L+V+DEM
Sbjct: 173 YNTLIKVYGKAHKLDEAWGYYKEMQ-DSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEM 231
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++ G++D LF+ M+ + P+A +Y+ L+ G + S RL
Sbjct: 232 QKIGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRL 291
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E K F+EM ++P L TF +LI C R++ LK +D M +N KP+ ++A+
Sbjct: 292 EIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKD-MEAFNYKPNLCIYAA 350
Query: 233 LIKGLCAVGELSLALGFKEEM 253
L+ G L AL F E M
Sbjct: 351 LVDAHAKAGMLDAALEFYERM 371
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D ++ VP F +++ YGR + + +V ++ + T ++NT
Sbjct: 116 DVANGFFQWIRRQKWYVPSTYSFSILLNTYGRGKDFQAVQRVLADLKADKCPMTTVAYNT 175
Query: 128 LLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH---------------------G 165
L+ K+D ++ M+ PD ++N LM G
Sbjct: 176 LIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIG 235
Query: 166 CVVSR--------------RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
C + R RL+ A +F+ M QP V + LI G R++
Sbjct: 236 CSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGT 295
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
K E+ MR ++P FASLI+ C G L L F ++M
Sbjct: 296 KYFEE-MRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDM 336
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 128 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 186
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A +V+DEM ++ + S N L+ T G++D +F+ M +K + D +YNIL
Sbjct: 187 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 246
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ G + RL +A +V++++L L+P++ TF LI +C E +VD A++L
Sbjct: 247 IQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVEL 297
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 3/204 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ A F +V + LH L VP+ +I+ +I ++ AL+VF+E+
Sbjct: 71 LVAAFSAAANFGKVSETLH-LMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFNEIKLR 129
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ T ++ + G ID ++ ++++K + P+ +Y L+ + E A
Sbjct: 130 GYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMA 189
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
KV+DEML + L+ + V+ L+ G C RVDEAL + E+M++ ++ D + LI+
Sbjct: 190 RKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVK-KGIEHDVITYNILIQ 248
Query: 236 GLCAVGELSLALGFKEEMVRNKIE 259
GLC G LS A+ E+++ + +E
Sbjct: 249 GLCKAGRLSEAIQVYEQLLSSGLE 272
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
V D +++F+ + L+ M+ G + PD Y ++HG
Sbjct: 68 VADLVAAFSAAANFGKVSETLHLMIAAGSV---------------PDTVIYQRIIHGLFA 112
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A +VF+E+ R VT+ T I GLC +DEA ++ +M+ ++P+
Sbjct: 113 HKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVD-KGMEPNEY 171
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ SL+ C G+ +A +EM+
Sbjct: 172 AYCSLVAYYCKAGDFEMARKVYDEML 197
>gi|297822503|ref|XP_002879134.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp.
lyrata]
gi|297324973|gb|EFH55393.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp.
lyrata]
Length = 436
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 133/267 (49%), Gaps = 24/267 (8%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++DP L LF N QP F++ Y + I KLG AKM+
Sbjct: 132 TPEELADAITLEEDPFLCFHLF-------NWASQQPR--FKHVNCSYHIAIRKLGAAKMY 182
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQ--RTVKS 124
E+ I++Q+ R + E ++ ++I ++ +A L A+ +F M +S N++ T+++
Sbjct: 183 KEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSMNLECRPTIRT 241
Query: 125 FNTLLNAMLTCGKIDRMTDLF---------QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ L A+L G + ++ Q+++ + PD + N L+ G V+S + DA
Sbjct: 242 YHILFKALLGRGNNSYTSHMYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDA 301
Query: 176 WKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++F +M + QP T+ LI+GLC + R A +L +M + P+ + + SL+
Sbjct: 302 LRIFHQMSVVYNCQPNSFTYDYLIHGLCAQGRTINARELLNEM-KGKGFVPNGKSYNSLV 360
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ EM+ N +D
Sbjct: 361 NAFALTGEIDDAVKCLWEMIENGRVVD 387
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTV 122
+ M+ E + L + D+ + P+ ++ Y + + AL++F +MS +N Q
Sbjct: 259 SHMYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYNCQPNS 318
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+++ L++ + G+ +L M+ K P+ SYN L++ ++ ++DA K E
Sbjct: 319 FTYDYLIHGLCAQGRTINARELLNEMKGKGFVPNGKSYNSLVNAFALTGEIDDAVKCLWE 378
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
M++ +T+ TL+ C + + DEA ++ E +
Sbjct: 379 MIENGRVVDFITYRTLVDESCRKGKYDEATRVLERL 414
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NXMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 3/219 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K ++ Y II LGR +++ +L ++K + + P I+ VI + R
Sbjct: 339 MKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMK-ERGLSPNVQIYNTVIYALCKCRSA 397
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
AL V ++M + V +FNTL+ A G ++ L + + + + P+ SY L
Sbjct: 398 SQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPL 457
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+HG V + A + EM+ R P +VT G LI+GL + +VDEAL ++E M
Sbjct: 458 IHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAE-RQ 516
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PDA ++ LI GLC LS A EM+ K++ D
Sbjct: 517 VMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPD 555
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 2/172 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP + + +I Y R + L + EM + TV ++ +++ + + ++
Sbjct: 308 VPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIES 367
Query: 144 L-FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L +++ E+ +SP+ YN +++ R A V ++M+ R P +VTF TLI C
Sbjct: 368 LLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFC 427
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E V+EALKL + +R ++P+ + LI G C GE+ +A EM+
Sbjct: 428 REGDVEEALKLLREAIR-RELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMI 478
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-M 141
++P + + +I + GR L + EM + V+ +NT++ A+ C + +
Sbjct: 342 IMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQAL 401
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L Q++ PD ++N L+ +E+A K+ E ++R L+P +++ LI+G
Sbjct: 402 AVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGF 461
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C+ V A L +M+ + PD +LI GL G++ AL +E+M ++ D
Sbjct: 462 CVRGEVMVASDLLVEMIGRGHT-PDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPD 520
Query: 262 A 262
A
Sbjct: 521 A 521
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I+ L + +M + +L ++ + +V P++ ++ +I + R+ L A ++F+ M
Sbjct: 524 YNVLISGLCKKRMLSAAKNLLVEML-EQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFM 582
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
R + ++N ++ G ++ M K PD +Y L+ G +
Sbjct: 583 EEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDI 642
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ A + +M+KRR +P +VT+ +LI G C D A
Sbjct: 643 KAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSA 680
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 55 DLIITKLGRAKMFDEVQ--QILHQL---------------KHDTRVVPEEIIFCNVISFY 97
DL++ +GR D V ++H L + +V+P+ I+ +IS
Sbjct: 472 DLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGL 531
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDA 156
+ R+L A + EM VQ + TL++ + K+ +F+ M EK D
Sbjct: 532 CKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDI 591
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ G S + +A M K P T+ TLI G + + AL+ D
Sbjct: 592 VAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCD 651
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVG 241
MM+ KP+ +ASLI G C +G
Sbjct: 652 MMK-RRCKPNIVTYASLICGYCNIG 675
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-----LFQIMEKYVSPDAC 157
++ AL V ++M+ V +N L++ + C K RM L +++E+ V PD
Sbjct: 502 VDEALMVREKMAERQVMPDANIYNVLISGL--CKK--RMLSAAKNLLVEMLEQKVQPDKF 557
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y L+ G + S +L DA K+F+ M ++ +V + +I G C ++EA+ M
Sbjct: 558 VYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSM 617
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+V + PD + +LI G G++ AL F +M++ +
Sbjct: 618 RKVGCI-PDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR 656
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I L + + + +L+Q+ +R P+ + F +I+ + R +E AL++
Sbjct: 380 NVQIYNTVIYALCKCRSASQALAVLNQMVA-SRFDPDVVTFNTLIAAFCREGDVEEALKL 438
Query: 110 FDE----------------MSSFNVQRTVK-------------------SFNTLLNAMLT 134
E + F V+ V + L++ ++
Sbjct: 439 LREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVV 498
Query: 135 CGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G++D + + M E+ V PDA YN+L+ G R L A + EML++++QP
Sbjct: 499 SGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFV 558
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ TLI G ++ +A K+ E M + D + ++IKG C G ++ A+
Sbjct: 559 YTTLIDGFIRSDKLSDARKIFEFMEEKGGYR-DIVAYNAMIKGYCKSGMMNEAV 611
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/244 (18%), Positives = 91/244 (37%), Gaps = 53/244 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I ++ M +E + ++ +P+E + +I Y + ++ AL+
Sbjct: 590 DIVAYNAMIKGYCKSGMMNEAVMCMSSMR-KVGCIPDEFTYTTLIDGYAKKGDIKAALRF 648
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK------------------- 150
+M + + ++ +L+ G D LF M+
Sbjct: 649 LCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFK 708
Query: 151 -----------------YVSPDACSYNILMHGCVVSR---------RLEDAWK------V 178
+ SP+ + + L++G R + A K V
Sbjct: 709 KDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDV 768
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
F ++ L P + + +I+ LC + +A++LKE M PD F SL+ G
Sbjct: 769 FKGLISDGLDPRISAYNAIIFSLCRHNMLGKAMELKEKMSN-KGCLPDPVTFLSLLYGFS 827
Query: 239 AVGE 242
+VG+
Sbjct: 828 SVGK 831
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT--LIYGLCLELRVDEAL 211
PDA N L+ V RR E A +++ EML R + + T ++ GLCLE RV+E
Sbjct: 237 PDAPHCNRLLRLLVDRRRWECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGR 296
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+L E V P A + LI G C G++ L EM
Sbjct: 297 RLIEARWGEGCV-PGAVFYNVLIDGYCRRGDVGRGLLLLGEM 337
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 3/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +N+ +Y++++ L R F + +L +++ ++ ++P+ + + VI + + LE
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNS-LMPDVVSYNTVIRGFCEGKELE 194
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
ALQ+ +EM ++ ++ L++A GK+D L + M+ K + D Y L+
Sbjct: 195 KALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLI 254
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L+ +FDE+L+R P +T+ TLI G C R+ EA ++ E MM V
Sbjct: 255 RGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMME-RGV 313
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
+P+ + LI GLC VG+ AL
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEAL 337
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 44 LKPFRYNLLHYDLII-----------TKLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFC 91
LK ++ L DLI+ +L R K +FDEV + + D+ P I +
Sbjct: 235 LKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLE-----RGDS---PCAITYN 286
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EK 150
+I + + L+ A ++F+ M V+ V ++ L++ + GK L +M +K
Sbjct: 287 TLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQK 346
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
P+ +YNI+++ + DA ++ + M KRR +P +T+ +L+ GLC + +DEA
Sbjct: 347 DEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEA 406
Query: 211 LKLKEDMMRVYN-VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KL M++ + PD F +LI GLC L AL + +V
Sbjct: 407 SKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLV 451
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 11/211 (5%)
Query: 45 KPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+ R N+ Y +I L G K + +Q + L+ D P + + +I+ + L+
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEE--PNVVTYNIIINKLCKDSLV 368
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK---YVSPDACSYN 160
AL++ + M + ++N+LL + G +D + L +M K Y PD S+N
Sbjct: 369 ADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFN 428
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+HG RL A ++D ++++ +VT L+ V++A++L + ++
Sbjct: 429 ALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWK---QI 485
Query: 221 YNVK--PDAQVFASLIKGLCAVGELSLALGF 249
N K P++ + ++I G C G L++A G
Sbjct: 486 SNSKIVPNSDTYTTMIDGFCKTGMLNVAKGL 516
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 54 YDLIITKLGRAKMF------------DEVQQILHQLKH--DTRVVPEEIIFCNVISFYGR 99
YDL++ KLG + +V + + K ++++VP + +I + +
Sbjct: 447 YDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCK 506
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACS 158
+L A + +M + +V +N LL+++ G +D+ LF+ M++ S PD S
Sbjct: 507 TGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVIS 566
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NI++ G + + ++ A + M L P L T+ LI +DEA+ + M+
Sbjct: 567 FNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMI 626
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PDA + S++K + GE F +++V + +D
Sbjct: 627 D-SGFEPDAHICDSVLKYCISQGETDKLTEFVKKLVDKDVVLD 668
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 92/197 (46%), Gaps = 3/197 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+ Y+ ++ L DE ++L+ LK + P+ I F +I + L AL ++
Sbjct: 388 ITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIY 447
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
D + + + N LLN+ L G +++ +L+ QI + P++ +Y ++ G +
Sbjct: 448 DLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKT 507
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A + +M L P++ + L+ LC + +D+A +L E+M R + PD
Sbjct: 508 GMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSF-PDVIS 566
Query: 230 FASLIKGLCAVGELSLA 246
F +I G G++ A
Sbjct: 567 FNIMIDGSLKAGDIKSA 583
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ A V MLKR + + L+ GLC L +A+ L + MR ++ PD
Sbjct: 121 RKTGFAHGVLALMLKRGFAFNVYNYNILLKGLCRNLEFGKAVSLLRE-MRQNSLMPDVVS 179
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+ ++I+G C EL AL EM
Sbjct: 180 YNTVIRGFCEGKELEKALQLANEM 203
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + +A + + L Q++ + P E + ++ + + + A +V
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
EM+ +V ++N L+N GK+ D + L + EK +SPD SY+ ++ G
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +++A +V EM+++ ++P +T+ +LI G C + R EA L E+M+RV + PD
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEF 521
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI C G+L AL EMV +
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 6/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLEHALQVFDE 112
+DL++ R + D+ I+H L +P + + V+ R+ R + A VF E
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M V V ++N L+ G ID LF ME K P+ +YN L+ G R+
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDMMRVYNVKPDAQVF 230
++D +K+ M + L+P L+++ +I GLC E R+ E + L E R Y++ D +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL--DEVTY 313
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
+LIKG C G AL EM+R+ +
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+ ++ R+K + + + +++V P + +I + A ++ A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L +FD+M + V ++NTL++ KID L + M K + P+ SYN++++G
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+++ V EM +R VT+ TLI G C E +AL + +M+R + + P
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLTP 343
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ SLI +C G ++ A+ F ++M
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLF-Q 146
+F V+ Y R L++ AL + + V S+N +L+A + + I ++F +
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E VSP+ +YNIL+ G + ++ A +FD+M + P +VT+ TLI G C +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+ KL M + ++P+ + +I GLC G + EM R +D
Sbjct: 256 IDDGFKLLRSMA-LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ R+ DE ++ ++ + + P+ I + ++I + R + A +
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++EM + ++ L+NA G +++ L +++EK V PD +Y++L++G
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNK 567
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI---------------YGLCLELRVDEALKL 213
R +A ++ ++ P+ VT+ TLI G C++ + EA ++
Sbjct: 568 QSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQV 627
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E M+ N KPD + +I G C G++ A +EMV++
Sbjct: 628 FESMLG-KNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ +I ++ +L +K + + P+ + + V+S + R+ ++ A
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
L+V EM ++ ++++L+ + DL++ M + + PD +Y L++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ LE A ++ +EM+++ + P +VT+ LI GL + R EA +L + +V
Sbjct: 530 YCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
Query: 226 DA--------------QVFASLIKGLCAVGELSLALGFKEEMV 254
D + SLIKG C G ++ A E M+
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESML 632
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ ++L + + P I + VI+ R ++ V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG-LEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV- 167
EM+ ++NTL+ G + + M ++ ++P +Y L+H
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 168 ---VSRRLE-------------------------------DAWKVFDEMLKRRLQPTLVT 193
++R +E +A++V EM P++VT
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI G C+ ++++A+ + ED M+ + PD +++++ G C ++ AL K EM
Sbjct: 418 YNALINGHCVTGKMEDAIAVLED-MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 254 VRNKIEMDA 262
V I+ D
Sbjct: 477 VEKGIKPDT 485
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD- 143
P+E + +I+ Y LE ALQ+ +EM V V +++ L+N + K R +
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL---NKQSRTREA 574
Query: 144 ---LFQIMEKYVSPDACSYNILMHGC-------VVS--------RRLEDAWKVFDEMLKR 185
L ++ + P +Y+ L+ C VVS + +A +VF+ ML +
Sbjct: 575 KRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGK 634
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+P + +I+G C + +A L ++M++ + V A L+K L G+++
Sbjct: 635 NHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIA-LVKALHKEGKVN 692
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + + Y+ I+ L R DE +++ ++ + P + V+S + RA+ ++
Sbjct: 248 KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVA-SGCAPNGATYSIVLSGHCRAKKVD 306
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +V +EMS V ++N LL+ + +D+ +LF M + +PD SY++++
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVL 366
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G + ++ DA +FD M++R+L P +VTF L+ GLC ++DEA L D M
Sbjct: 367 NGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLL-DQMTCSGC 425
Query: 224 KPDAQVFASLIKGL 237
PD + +L+ GL
Sbjct: 426 APDYVAYNTLMNGL 439
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I L + + + ++L ++ VP+ I + ++S R + A Q
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKG-YVPDNITYNTILSGLCRMGKVSEAKQF 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
FD M S V ++N LL+A+ GK D LF+ ++ K PD +YN ++ G
Sbjct: 207 FDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 266
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++A ++F +M+ P T+ ++ G C +VD+A K+ E+M ++ V PD
Sbjct: 267 KSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAV-PDVV 325
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ GLC + A MV N D
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 94/176 (53%), Gaps = 3/176 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P+ I + +I Y + ++ A ++++EM S ++ ++ ++N+LLNA K+
Sbjct: 36 DNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMK 95
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+LF+ M EK PD +Y+ ++ G C + E +F +M++R V + L
Sbjct: 96 EAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNAL 155
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
I GLC + ++ A KL E+M V PD + +++ GLC +G++S A F + M
Sbjct: 156 INGLCKDENIERAYKLLEEMASKGYV-PDNITYNTILSGLCRMGKVSEAKQFFDSM 210
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F +L + GK+ LF Q+++ +SPD YNIL+ G R+++A ++++EM
Sbjct: 10 TFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEM 69
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ L+P++ T+ +L+ C E ++ EA++L + M +PD ++++I GLC G+
Sbjct: 70 VSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAE-KGFEPDVVTYSTIISGLCKTGK 128
Query: 243 LSLAL 247
++ AL
Sbjct: 129 VTEAL 133
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 100/199 (50%), Gaps = 6/199 (3%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+++I + DE ++ ++ + P + ++++ + + ++ A+++F
Sbjct: 44 IEYNILIDGYAKKGRVDEANRLYEEMVS-VGLEPSIYTYNSLLNAFCKETKMKEAMELFK 102
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVS 169
M+ + V +++T+++ + GK+ ++ +++E+ S + +YN L++G
Sbjct: 103 TMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKD 162
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDAQ 228
+E A+K+ +EM + P +T+ T++ GLC +V EA + + M R Y+ PD
Sbjct: 163 ENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYS--PDVV 220
Query: 229 VFASLIKGLCAVGELSLAL 247
+ L+ L G+ A+
Sbjct: 221 AYNGLLDALYKEGKTDEAM 239
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y ++++ RAK D+ ++L ++ VP+ + + ++ + L++ A ++
Sbjct: 288 NGATYSIVLSGHCRAKKVDDAHKVLEEMSK-IGAVPDVVTYNILLDGLCKTNLVDKAHEL 346
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F M + S++ +LN + K+ LF +++E+ + PD ++NILM G
Sbjct: 347 FSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCK 406
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ +L++A + D+M P V + TL+ GL + R +A +L + M
Sbjct: 407 AGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 455
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P F V+ + + L ++F++M + +N L++ G++D L
Sbjct: 6 PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M + P +YN L++ ++++A ++F M ++ +P +VT+ T+I GLC
Sbjct: 66 YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+V EAL++ M + + +LI GLC + A EEM
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMA 176
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
SP+ ++ +++ +L D +K+F++ML + P + + LI G + RVDEA +
Sbjct: 5 SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L E+M+ V ++P + SL+ C ++ A+ + M E D
Sbjct: 65 LYEEMVSV-GLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPD 112
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ +V P+ I + ++ + L+HAL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDRITYSTLMCGLAKQDRLDHALDL 215
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
DEM VQ V +N LL G+ +++ ++ + + P+ +YN+++ G
Sbjct: 216 LDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R ++ +V++ M+ LQP ++T+G LI+GLC VD A ++ ++++ + DA
Sbjct: 276 KFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT-GLVIDA 334
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
++ SL+KG C G + A F +
Sbjct: 335 AMYNSLVKGFCQAGRVQEAWKFWDS 359
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I L + M DE ++ L+ D +P+ + F +I + A +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+E Q V S+++++N + G++ +++ M+K P++ YN L+ G
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R DA +++ +M PT++T+ TLI GLC + EA + +M+ PD
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NGFTPDIT 545
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI+GL + ++ AL ++++ +++D
Sbjct: 546 TYGSLIRGLFSDKKIDDALSIWKQILYKGLKVD 578
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 63 RAKMFDEVQQILHQLKHDT---RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
RA+ F + L H R+ P + V+ L+ A+ +FD + V
Sbjct: 131 RARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVA 190
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKV 178
+++TL+ + ++D DL M + V PD YN L+ GC + E +V
Sbjct: 191 PDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRV 250
Query: 179 FDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+D+++K +P L T+ ++ GLC R E ++ E M+ N++PD + LI GL
Sbjct: 251 WDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV-ANNLQPDVITYGILIHGL 309
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C G++ A E+++ + +DA
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDA 334
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L + ++ ++ D P I+ +IS + + A+++
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG-CKPNSHIYNALISGFCQVYRTSDAVRI 496
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ +M+ TV ++NTL++ + K + + +++E +PD +Y L+ G
Sbjct: 497 YSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFS 556
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++DA ++ ++L + L+ ++ LI+GLC +VDEAL + DM N P+
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLV 616
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ GL G + A + + +E D
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPD 649
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 113/243 (46%), Gaps = 37/243 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ +A F++V ++ +L D P + ++ + + +V
Sbjct: 227 DVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEV 286
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++ M + N+Q V ++ L++ + G +D ++ +I++ + DA YN L+ G
Sbjct: 287 WERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQ 346
Query: 169 SRRLEDAWKVFD---------------------------------EMLKRRLQ--PTLVT 193
+ R+++AWK +D ++L++ + P VT
Sbjct: 347 AGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVT 406
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
FGTLI+GLC ++A + E+ RV + D ++S+I GLC VG L A+ E+M
Sbjct: 407 FGTLIHGLCQNGFANKAFTIFEE-ARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKM 465
Query: 254 VRN 256
++
Sbjct: 466 DKD 468
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 82 RVVPEEIIFCN--------VISFYGRARLLEHALQVFDEMSSFNVQRTV----KSFNTLL 129
R +P I+ CN ++ + RAR A F +S R + +++N +L
Sbjct: 107 RALPS-ILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165
Query: 130 NAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
++ G +DR LF + + V+PD +Y+ LM G RL+ A + DEM + R+Q
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQ 225
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P +V + L+ G ++ +++ + +++ +P+ + ++ GLC G
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285
Query: 249 FKEEMVRNKIEMD 261
E MV N ++ D
Sbjct: 286 VWERMVANNLQPD 298
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 4/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I+ + + +I ++ D P I + +I +A + A V EM
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMA-DNGCSPTVITYNTLIDGLCKAEKYQEASSVAREM 535
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ +L+ + + KID ++ QI+ K + D +NIL+HG + ++
Sbjct: 536 VENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595
Query: 173 EDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++A VF +M K+ P LVT+ TL+ GL +D+A L + ++PD +
Sbjct: 596 DEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITE-DGLEPDIISYN 654
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+ IKGLC+ + + +E++ I
Sbjct: 655 TRIKGLCSCDRIHEGIQLLDEVLSRGI 681
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 97/198 (48%), Gaps = 4/198 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L +A+ + E + ++ + P+ + ++I + ++ AL +
Sbjct: 508 TVITYNTLIDGLCKAEKYQEASSVAREMVENG-FTPDITTYGSLIRGLFSDKKIDDALSI 566
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
+ ++ ++ V N L++ + + GK+D +F M+ K P+ +YN LM G
Sbjct: 567 WKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLY 626
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ ++ A ++ + + L+P ++++ T I GLC R+ E ++L ++++ + P
Sbjct: 627 ETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLS-RGIIPTV 685
Query: 228 QVFASLIKGLCAVGELSL 245
+ L++ + G + +
Sbjct: 686 ITWNILVRAVIKYGPIQV 703
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEH 105
F ++ Y +I L K D+ I Q+ + V +++ N+ I A ++
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKV--DVMMHNILIHGLCSAGKVDE 597
Query: 106 ALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL VF +M N + ++NTL++ + G ID+ L+ I E + PD SYN +
Sbjct: 598 ALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRI 657
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
G R+ + ++ DE+L R + PT++T+ L+
Sbjct: 658 KGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692
>gi|15222796|ref|NP_175985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174230|sp|Q9LG23.1|PPR82_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g55890, mitochondrial; Flags: Precursor
gi|8778306|gb|AAF79315.1|AC002304_8 F14J16.14 [Arabidopsis thaliana]
gi|18650654|gb|AAL75896.1| At1g55890/F14J16_4 [Arabidopsis thaliana]
gi|53828645|gb|AAU94432.1| At1g55890 [Arabidopsis thaliana]
gi|332195194|gb|AEE33315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 398
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 46/286 (16%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L SL+ +++PK ++ FK +A + FR N+ YD + +L AK V+
Sbjct: 44 LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VF+EM + + +R+V SFN LL+A
Sbjct: 95 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153
Query: 132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
K D + +LF + +S PD SYN L+ L +A + DE+ + L+P
Sbjct: 154 YRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKP 213
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDM--------MRVYN------------------- 222
+VTF TL+ L+ + + ++ M +R YN
Sbjct: 214 DIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLF 273
Query: 223 -------VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+KPD F ++I+G G++ A + +E+V++ D
Sbjct: 274 GELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPD 319
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 111/214 (51%), Gaps = 3/214 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P + + ++L ++ +++ +K FD V+++ ++L + P+ + + +I
Sbjct: 133 EEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCE 192
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L A+ + DE+ + ++ + +FNTLL + G+ + +++ +++EK V+ D +
Sbjct: 193 KDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRT 252
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN + G + ++ +F E+ L+P + +F +I G E ++DEA ++++
Sbjct: 253 YNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIV 312
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALG-FKE 251
+ + +PD FA L+ +C G+ A+ FKE
Sbjct: 313 K-HGYRPDKATFALLLPAMCKAGDFESAIELFKE 345
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ + + + Y I L + DE +QI +++ D + P E +C+++++Y +A
Sbjct: 283 LRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMV-DKGMEPNEYAYCSLVAYYCKAGDF 341
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A +V+DEM ++ + S N L+ T G++D +F+ M +K + D +YNIL
Sbjct: 342 EMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNIL 401
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ G + RL +A +V++++L L+P++ TF LI +C E +VD A++L
Sbjct: 402 IQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVEL 452
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 105/204 (51%), Gaps = 3/204 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ A F +V + LH L VP+ +I+ +I ++ AL+VF+E+
Sbjct: 226 LVAAFSAAANFGKVSETLH-LMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFNEIKLR 284
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ T ++ + G ID ++ ++++K + P+ +Y L+ + E A
Sbjct: 285 GYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMA 344
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
KV+DEML + L+ + V+ L+ G C RVDEAL + E+M++ ++ D + LI+
Sbjct: 345 RKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVK-KGIEHDVITYNILIQ 403
Query: 236 GLCAVGELSLALGFKEEMVRNKIE 259
GLC G LS A+ E+++ + +E
Sbjct: 404 GLCKAGRLSEAIQVYEQLLSSGLE 427
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
V D +++F+ + L+ M+ G + PD Y ++HG
Sbjct: 223 VADLVAAFSAAANFGKVSETLHLMIAAGSV---------------PDTVIYQRIIHGLFA 267
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A +VF+E+ R VT+ T I GLC +DEA ++ +M+ ++P+
Sbjct: 268 HKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVD-KGMEPNEY 326
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ SL+ C G+ +A +EM+
Sbjct: 327 AYCSLVAYYCKAGDFEMARKVYDEML 352
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNXLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A+K M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K +++ ++ +I RAK D+ ++LH++ + +V I + +I + +
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGD 443
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----------- 151
L A + EM S V V + NTLL+ + GK+ ++F+ M+K
Sbjct: 444 LNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFN 503
Query: 152 -VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
V PD +YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA
Sbjct: 504 GVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 563
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ D M + PD F +LI G C G + L EM + I DA
Sbjct: 564 TQMF-DSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADA 614
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 91 CNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
CN SF + L AL F +++ TV +FNTLL+ + +I DL
Sbjct: 114 CNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDL 173
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
F M K P+ ++ LM+G R+ +A + D ML+ LQP +T+GT++ G+C
Sbjct: 174 FHQMCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKM 230
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
AL L M V ++ P+ ++ ++I GL G S A EM +I
Sbjct: 231 GDTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEI 284
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 103/210 (49%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II L + + + +++ + + P+ + + +I+ + + A Q+
Sbjct: 252 NVVIYNTIIDGLWKDGRHSDAHNLFIEMQ-EKEIFPDIVTYNCMINGFCISGRWSDAEQL 310
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V +F+ L+NA + GK +L+ +++ + + P +Y+ ++ G
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL+ A +F + P ++TF TLI G C RVD+ +KL +M + +
Sbjct: 371 QNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEA-GLVANTI 429
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G C VG+L+ A +EM+ + +
Sbjct: 430 TYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q KP N++ + ++ L R E +L ++ D + P +I + ++ +
Sbjct: 176 QMCKP---NVVTFTTLMNGLCREGRVVEAVALLDRMLEDG-LQPNQITYGTIVDGMCKMG 231
Query: 102 LLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
AL + +M + + V +NT+++ + G+ +LF ++ EK + PD +Y
Sbjct: 232 DTVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTY 291
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N +++G +S R DA ++ EML+R++ P +VTF LI E + EA +L ++M+
Sbjct: 292 NCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLP 351
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
++ P ++S+I G C L A
Sbjct: 352 -RSIIPSTVTYSSMIDGFCKQNRLDAA 377
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A +P ++ Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPH-R 538
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 575
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SPD ++N L+ G + ++D ++F EM +R + +T+ TLIYG
Sbjct: 576 -----------SPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGF 624
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+D AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 625 RKVDNIDGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++V+ + ++ + VP E+ F ++ F+ R ++E A
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENN-CVPNEVTFDMLVRFFCRGGMVERA 296
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
++V D MS N ++N++ G++D + M Y SPD SY ++ G
Sbjct: 297 IEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKG 356
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA ++ +EM+++ P VTF T I LC + +D+A+ L E M Y
Sbjct: 357 LCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPE-YGCSV 415
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ +L+ G C G + AL
Sbjct: 416 GIVTYNALVNGFCVQGRVDSAL 437
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 105/225 (46%), Gaps = 7/225 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + P + + Y ++ L RA +++ +++L+++ P E+ F I
Sbjct: 336 NNMGSYGCSP---DTISYTTVLKGLCRAGRWEDAKELLNEMVRKN-CPPNEVTFNTFICI 391
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ L++ A+ + ++M + + ++N L+N G++D +LF + P+
Sbjct: 392 LCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLP--CEPNT 449
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y L+ G + RL+ A ++ EM++ +VTF L+ C + V+EA++L +
Sbjct: 450 ITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQ 509
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MM + P+ F +L+ G+ AL +V I +D
Sbjct: 510 MME-HGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLD 553
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y + LI R ++ D + + L+ + + P + + ++ ++
Sbjct: 130 SMPVPPDAYT--YTPLIRGLCDRGRVGDALSLLDDMLRRECQ--PSVVTYTVLLEAVCKS 185
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDA 156
A++V DEM + + ++N ++N M + DR+ D QI+ + S PD
Sbjct: 186 SGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMC---REDRVDDARQILNRLSSYGFQPDT 242
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------------- 197
SY ++ G ++R ED +F EM++ P VTF L
Sbjct: 243 VSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDR 302
Query: 198 ----------------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I +C + RVD+A + +M Y PD + +++KGLC G
Sbjct: 303 MSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGS-YGCSPDTISYTTVLKGLCRAG 361
Query: 242 ELSLALGFKEEMVR 255
A EMVR
Sbjct: 362 RWEDAKELLNEMVR 375
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEK 150
+++ Y R L+ A ++ ++S V ++ L+ + G++ D ++ L ++ +
Sbjct: 110 TLVAGYCRYGRLDAARRL---IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRR 166
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
P +Y +L+ S A KV DEM + P +VT+ +I G+C E RVD+A
Sbjct: 167 ECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDA 226
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
++ + + Y +PD + +++KGLCA
Sbjct: 227 RQIL-NRLSSYGFQPDTVSYTTVLKGLCAA 255
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V ++NTL+ G++D L M V PDA +Y L+ G R+ DA + D+
Sbjct: 105 VFAYNTLVAGYCRYGRLDAARRLIASMP--VPPDAYTYTPLIRGLCDRGRVGDALSLLDD 162
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
ML+R QP++VT+ L+ +C +A+K+ D MR P+ + +I G+C
Sbjct: 163 MLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVL-DEMRAKGCTPNIVTYNVIINGMC 218
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 12/222 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P ++ Y+ ++ D ++ + L + P I + +++
Sbjct: 406 EQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE----PNTITYTTLLTGLCH 461
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
A L+ A ++ EM + V +FN L++ G ++ +L Q +ME +P+ +
Sbjct: 462 AERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLIT 521
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KE 215
+N L+ G E+A ++ ++ + + +T+ +++ L E R++EA+++ +
Sbjct: 522 FNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQ 581
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
DM ++P A ++ ++ LC E A+ F MV N
Sbjct: 582 DM----GMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNS 619
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R DA +V + + TL+ G C R+D A +L M V PDA +
Sbjct: 85 RTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM----PVPPDAYTY 140
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LI+GLC G + AL ++M+R + +
Sbjct: 141 TPLIRGLCDRGRVGDALSLLDDMLRRECQ 169
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I + +A +I Q++ + P E + +I + + L+ A +V
Sbjct: 346 NVVTYTTLINCMCKAGNLSRAVEIFDQMR-VRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM +V ++N L++ G++ + + M E+ + PD SY+ ++ G
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R L A+++ +EM+++ + P VT+ +LI GLCL+ ++ EA L +MMR + PD
Sbjct: 465 ERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMR-RGLPPDEV 523
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
+ SLI C GELS AL +EMV+
Sbjct: 524 TYTSLINAYCVDGELSKALRLHDEMVQ 550
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 40/249 (16%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
NL+ Y+ +I L G+ +M EV +++ +++ +VP+E+ + +++ + + L L
Sbjct: 276 NLISYNSVINGLCGKGRM-SEVGELVEEMR-GKGLVPDEVTYNTLVNGFCKEGNLHQGLV 333
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-------------------- 148
+ EM + V ++ TL+N M G + R ++F M
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393
Query: 149 ------EKY----------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
E Y SP +YN L+HG R+++A + M++R L P +V
Sbjct: 394 QKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVV 453
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ T+I G C E + +A ++KE+M+ V PD ++SLI+GLC +L A E
Sbjct: 454 SYSTVIAGFCRERELGKAFQMKEEMVE-KGVLPDTVTYSSLIQGLCLQQKLVEAFDLFRE 512
Query: 253 MVRNKIEMD 261
M+R + D
Sbjct: 513 MMRRGLPPD 521
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 8/224 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYG 98
E + + P N++ Y+ +I + K E +L + V I + +VI G
Sbjct: 234 EKEGISP---NVVTYNTLIDASCKKKKVKEAMALLRAMAVGG-VAANLISYNSVINGLCG 289
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDAC 157
+ R+ E ++ +EM + ++NTL+N G + + + L +++ K +SP+
Sbjct: 290 KGRMSEVG-ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVV 348
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y L++ + L A ++FD+M R L+P T+ TLI G C + ++EA K+ +M
Sbjct: 349 TYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEM 408
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V P + +L+ G C +G + A+G MV + D
Sbjct: 409 I-VSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD 451
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 7/171 (4%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-----IDRMTD 143
+F V+ R + AL + + TV S+N +L+A+L D
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+F+ M VSP+ +YN+++ G V LE +M K + P +VT+ TLI C
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +V EA+ L M V V + + S+I GLC G +S EEM
Sbjct: 254 KKKKVKEAMALLR-AMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEM 303
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + VI+ + R R L A Q+ +EM V ++++L+ + K+ DL
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDL 509
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++M + + PD +Y L++ V L A ++ DEM++R P VT+ LI GL
Sbjct: 510 FREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNK 569
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ R A +L + +V PD + +LI+
Sbjct: 570 KARTKVAKRLLLKLFYEESV-PDDVTYNTLIE 600
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ +M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Query: 85 PEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P ++ + N+ I+ + + + A +F+E+ ++ T SFNTL+N + +D
Sbjct: 220 PPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFR 279
Query: 144 LFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + ME+ + PD +Y++L+HG RL+ A ++FDEM +R L+P +TF LI G C
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQC 339
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R+D A+ M+ + VKPD ++ +L+ GLC VG+++ A +EM
Sbjct: 340 RSRRIDSAMNTYHQMLTM-GVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 110/210 (52%), Gaps = 3/210 (1%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
+Y+++I K + + + I ++++ + P + F +I+ ++R L+ ++
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRG-LRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M + V +++ L++ + G++D LF ++ ++ + P+ ++ L+ G SRR
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRR 343
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A + +ML ++P LV + TL+ GLC V++A KL D MR+ +KPD +
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL-VDEMRMVGMKPDKITYT 402
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI G C G+L A+ ++ M + +D
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 22/226 (9%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQL-----KHDTRVVPEEI-----------IF 90
FR+ Y + L +MF E Q I+ L K V I +F
Sbjct: 97 FRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVF 156
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIME 149
++ Y + + A+Q F + + N Q LL+ M+ + T +I+E
Sbjct: 157 DALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
P YNIL++ + DA +F+E+ KR L+PT V+F TLI GLC +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276
Query: 210 ALKLKEDM--MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+LK+ M R+Y PD ++ LI GLC G L +A +EM
Sbjct: 277 GFRLKKTMEENRIY---PDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I L + D +Q+ +++ + P I F +I R+R ++ A+
Sbjct: 292 DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-LRPNGITFTALIDGQCRSRRIDSAMNT 350
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+ +M + V+ + +NTLLN + G +++ L M + PD +Y L+ G
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCK 410
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A ++ M + + V F LI G C + RV +A + +M+ +KPD
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA-GMKPDDA 469
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +I G C G + + +EM N
Sbjct: 470 TYTMVIDGYCKKGNVKMGFKLLKEMQIN 497
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 101/204 (49%), Gaps = 3/204 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L + ++ ++++ +++ + P++I + +I Y + LE A+++
Sbjct: 362 DLVMYNTLLNGLCKVGDVNKARKLVDEMRM-VGMKPDKITYTTLIDGYCKEGDLESAMEI 420
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
M+ V +F L++ G++ D L +++E + PD +Y +++ G
Sbjct: 421 RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ +K+ EM +P ++T+ L+ GLC + ++ A L E M+ + V PD
Sbjct: 481 KGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL-GVTPDDI 539
Query: 229 VFASLIKGLCAVGELSLALGFKEE 252
+ L++G C G+ L + E
Sbjct: 540 TYNILLEGHCKNGKAEDLLKLRNE 563
>gi|449456671|ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
gi|449503658|ref|XP_004162112.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 105/195 (53%), Gaps = 3/195 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLL 103
K ++ N Y L++++L ++FD++++++ ++K + + F +VI YG A L
Sbjct: 85 KDYKPNKEIYTLVVSRLAEGRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRL 144
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
A+ +M ++N +VK+FN +LN +++ D + +++ K + DAC NIL
Sbjct: 145 NKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNIL 204
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G S L+ A KV DE ++R +P + TF TL++GLC + AL+L M
Sbjct: 205 VKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMEN-EG 263
Query: 223 VKPDAQVFASLIKGL 237
V PD F LI GL
Sbjct: 264 VCPDTITFNILISGL 278
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L++ L + + IL+ +P+ F +I Y + R ++ A+++
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CIPDIFTFNTLIDGYCKQRNMDKAIEI 483
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M S + V ++NTLLN + K+D + D F+ M EK +P+ +YNIL+
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCK 543
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ +A ++F EM R L P +VT TLI GLC +D+A +L + + Y
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTA 603
Query: 229 VFASLIKGLCAVGELSLA 246
+F +I C +S+A
Sbjct: 604 IFNIMINAFCEKLNVSMA 621
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN+A P +A+++R Q DP AL++F N TE F++ L Y +I K
Sbjct: 1 MNRA--LQPKHVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEK 49
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG F+ ++ +L +++ + E ++ ++ YGR ++ A+ VF+ M ++ +
Sbjct: 50 LGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD------------------------ 155
+V+S+N ++N ++ G + ++ M+ + PD
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169
Query: 156 ------ACSYNILMHGCVVSRRLE-----DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
C +N + + V+S + +A+ +FDEMLK+ + P ++TF LI+ LC +
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V E+ KL +M+ V P+ F I+GLC G + A E +V + D
Sbjct: 230 GNVQESEKLFSKVMK-RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+ II +A M +IL +P+E + ++I+ + A+ V
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLCNDGDMNRAMAV 378
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F E + ++ +NTL+ + G + + L + +ME SPD +YN++++G
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L DA + ++ + + P + TF TLI G C + +D+A+++ + M+ + + PD
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS-HGITPDVI 497
Query: 229 VFASLIKGLCAVGEL 243
+ +L+ GLC +L
Sbjct: 498 TYNTLLNGLCKARKL 512
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 3/200 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL +++ I L R DE ++L + + + P+ I + +I + + L A
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICGFCKHSKLVEAECY 308
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+M + V+ ++NT++N G + + + M K PD +Y+ L++G
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A VF E +++ + +++ + TL+ GL + V +AL+L +DMM + PD
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIW 427
Query: 229 VFASLIKGLCAVGELSLALG 248
+ ++ GLC +G LS A G
Sbjct: 428 TYNLVVNGLCKMGCLSDANG 447
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 15/249 (6%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
T R+ S + P AL+L N P + +N + Y +I+ +
Sbjct: 148 THTIRMKSFC-ITGRPTAALRLLNN----------MPGQGCEFNAVSYCAVISGFYKENC 196
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
E + ++ + P+ + F +I + ++ + ++F ++ V + +FN
Sbjct: 197 QIEAYHLFDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255
Query: 127 TLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+ + G ID L + I+ + ++PD SYN L+ G +L +A +M+
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
++P T+ T+I G C + A K+ D M PD ++SLI GLC G+++
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAM-FKGFIPDEFTYSSLINGLCNDGDMNR 374
Query: 246 ALG-FKEEM 253
A+ F E M
Sbjct: 375 AMAVFYEAM 383
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
+++++ + PD ++N L+H ++++ K+F +++KR + P L TF I GLC +
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+DEA +L E ++ + PD + +LI G C +L A + +MV + +E
Sbjct: 266 AIDEAARLLESIVS-EGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 24/249 (9%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S L++ +KDP+ AL +F N Q F++N Y I+ KL
Sbjct: 87 KRKHISHDSAIDLIKREKDPQHALNIF-------NMVSEQ--NGFQHNNATYATILDKLA 137
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
R F V ++LHQ+ ++T E IF N++ + ++ L E L + F++Q V
Sbjct: 138 RCNNFHAVDRVLHQMTYET-CKFHEGIFVNLMKHFSKSSLHEKLLHAY-----FSIQPIV 191
Query: 123 ------KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLED 174
K+ +T LN +L ++D L ++ ++ P+ C +NIL+ + L+
Sbjct: 192 REKPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDS 251
Query: 175 AWKVFDEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A+++ +EM P LVT+ TL+ GLC RV EA L E+M+ ++ PD + L
Sbjct: 252 AFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVL 311
Query: 234 IKGLCAVGE 242
I G C G+
Sbjct: 312 INGFCRGGK 320
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 106/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +++++ + D +I+ ++++ P + + ++ R ++ A +
Sbjct: 232 NVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDL 291
Query: 110 FDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
F+EM S + + ++N L+N GK DR ++ Q M+ P+ +Y+ L+ G
Sbjct: 292 FEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLC 351
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+LEDA V E+ L+P VT+ +LI LC + DEA++L E+ M+ + D+
Sbjct: 352 KVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEE-MKENGCQADS 410
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F L+ GLC G+ AL E++ + + ++
Sbjct: 411 VTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLN 444
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 6/199 (3%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM--SSFNVQRTVKSF 125
D +++L K D P +F ++ ++ + L+ A ++ +EM S F+ V ++
Sbjct: 214 DLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLV-TY 272
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+TL++ + G++ DLF+ M ++ PD +YN+L++G + + A V M
Sbjct: 273 STLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMK 332
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
P + + L+ GLC ++++A + ++ + +KPDA + SLI LC G+
Sbjct: 333 SNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEI-KGSGLKPDAVTYTSLINFLCRNGKS 391
Query: 244 SLALGFKEEMVRNKIEMDA 262
A+ EEM N + D+
Sbjct: 392 DEAIELLEEMKENGCQADS 410
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 47 FRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
F Y NL+ Y ++ L R E + ++ +VP+ + + +I+ + R +
Sbjct: 264 FSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDR 323
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMH 164
A V M S V +++ L++ + GK+ D L +I + PDA +Y L++
Sbjct: 324 ARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLIN 383
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ + ++A ++ +EM + Q VTF L+ GLC E + +EAL + E +
Sbjct: 384 FLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKL 436
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ +Y ++ L + ++ + +L ++K + + P+ + + ++I+F R + A+++
Sbjct: 339 NVYNYSALVDGLCKVGKLEDAKGVLAEIK-GSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM Q +FN LL + GK + D+ + + ++ V + SY I+++
Sbjct: 398 LEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQ 457
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L+ A ++ ML+R QP T L+ LC VD+A D++ + +P +
Sbjct: 458 KCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEM-GFQPGLE 516
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ LI +C +L +E+V
Sbjct: 517 TWEVLIGLICRERKLLYVFELLDELV 542
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 111/208 (53%), Gaps = 5/208 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHA 106
R N++ Y+ II L + K+ +E + ++ D R + P I + +I + A L A
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEM--DARGIFPNVITYSTLIYGFCLAGQLMEA 204
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
+ +EM N+ V ++ L++A+ GK+ +L +M K V P+ SYN LM G
Sbjct: 205 FGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDG 264
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +++A ++F M+++ + P + ++ +I LC RVDEA+ L +++ N+ P
Sbjct: 265 YCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLH-KNMVP 323
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++SLI G C +G ++ AL +EM
Sbjct: 324 NTVTYSSLIDGFCKLGRITSALDLLKEM 351
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I +L ++K DE +L ++ H +VP + + ++I + + + AL +
Sbjct: 289 NVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN-MVPNTVTYSSLIDGFCKLGRITSALDL 347
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM V ++ +LL+A+ +D+ T LF M E+ + P+ +Y L+ G
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R ++A K+F +L + + + T+ +I GLC E +DEAL +K M + PDA
Sbjct: 408 GGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCI-PDAV 466
Query: 229 VFASLIKGL 237
F +I+ L
Sbjct: 467 TFEIIIRSL 475
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ +L D++ + Q S+ TLLN + G+ L +++E + P+ YN
Sbjct: 96 VKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNT 155
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + + +A+ ++ EM R + P ++T+ TLIYG CL ++ EA L +M+ +
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMI-LK 214
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ P+ + L+ LC G++ A
Sbjct: 215 NINPNVYTYTILMDALCKEGKVKEA 239
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+ FN ++ +++ LF+ M+ K + PD + NIL++ ++ ++ V
Sbjct: 10 IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
++LK QP +T TL+ GLCL+ V ++L D + + D +A+L+ GLC +
Sbjct: 70 KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHF-HDKVVAQGFQMDQVSYATLLNGLCKI 128
Query: 241 GELSLAL 247
GE AL
Sbjct: 129 GETRSAL 135
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-R 140
R P + F ++ + + A+ +F +M ++ + + N L+N G++
Sbjct: 5 RDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFS 64
Query: 141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
T L +I++ P+ + N LM G + ++ + D+++ + Q V++ TL+ G
Sbjct: 65 FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNG 124
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
LC ALKL M+ + +P+ ++ ++I GLC
Sbjct: 125 LCKIGETRSALKLLR-MIEDRSTRPNVVMYNTIIDGLC 161
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P +N ++ V + A +F +M + ++P L T LI C ++ +
Sbjct: 7 TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++++ +P+ +L+KGLC GE+ +L F +++V +MD
Sbjct: 67 VLGKILKL-GYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMD 114
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ +I L + K E +++ ++K P + F +I + + +E +
Sbjct: 163 DCVSYNTVINGLCKGKRLVEAKELFKEMK-GGECKPNSVTFSALIDGFCKNGDVEEGFGL 221
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH---- 164
+EM ++ V ++ L++ + G I+R +LF +++ K V+P+ +Y+ LM+
Sbjct: 222 LEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCK 281
Query: 165 ---------------GCVV----------------SRRLEDAWKVFDEMLKRRLQPTLVT 193
GC V + R DA KV D M+KR +P VT
Sbjct: 282 KQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVT 341
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ +I GLC E RVD+AL + E M + KPD +++L+KGLC VG++ A+
Sbjct: 342 YNAIINGLCKEGRVDDALGILETMAK-KGKKPDVVTYSTLVKGLCGVGKIDEAV 394
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 13/229 (5%)
Query: 41 AQPLKPFRYNLLHY----------DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90
++ L F + L Y + +I L +AK +D V + H V P
Sbjct: 39 SESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISV-HSKMASVSVFPCFTSL 97
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK 150
+I + + A V + V +FN LL G + DLF +M++
Sbjct: 98 SALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR 157
Query: 151 Y-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ PD SYN +++G +RL +A ++F EM +P VTF LI G C V+E
Sbjct: 158 NCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEE 217
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
L E+M ++ ++ D V+++LI G C+ G++ EM+R +
Sbjct: 218 GFGLLEEMEKM-GLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNV 265
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 101/209 (48%), Gaps = 3/209 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYG 98
E K + +++ Y ++ L DE +L+ L + + P+ F VI
Sbjct: 363 ETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELC 422
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDAC 157
+ R L HA +V+ M + ++N L++ L+ GK+ + +L++ ++ +SP+A
Sbjct: 423 KQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAA 482
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y +L++G + L A +F++ +PT+ + TL+ LC E V++A L ++
Sbjct: 483 TYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQE- 541
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLA 246
MR N PD F +I G G++ A
Sbjct: 542 MRNANHDPDVVSFNIIIDGTLKAGDVESA 570
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + +++ + + + A Q+ D M+ V+ V ++ L + + K R +
Sbjct: 265 VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGL---SKNGRAS 321
Query: 143 DLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D ++++ V P+ +YN +++G R++DA + + M K+ +P +VT+ TL+
Sbjct: 322 DAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381
Query: 199 YGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLC 238
GLC ++DEA+ L +M + +++KPD F +I+ LC
Sbjct: 382 KGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELC 422
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 3/212 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F N+ +++L++ ++ + + +K + ++P+ + + VI+ + + L
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC-LIPDCVSYNTVINGLCKGKRLV 181
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A ++F EM + +F+ L++ G ++ L + MEK + D Y+ L+
Sbjct: 182 EAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALI 241
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +E ++F+EML++ + P +VT+ L+ LC + + EA ++ D M V
Sbjct: 242 SGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQML-DTMTGCKV 300
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+PD + L GL G S A+ + MV+
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVK 332
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%)
Query: 45 KPFRYNLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+ F N++ Y+++I L K+ ++ L + D+ + P + +I+ + ++L
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALE--LWKDAVDSGISPNAATYTVLINGLCKMQML 497
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNIL 162
A +F++ + + TV +NTL+ ++ +++ +LFQ M PD S+NI+
Sbjct: 498 SIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNII 557
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + +E A ++ EML L P +TF LI ++DEA L E M+ +
Sbjct: 558 IDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGH 617
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V PDA +F SL+KG G+ + ++M + +D+
Sbjct: 618 V-PDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDS 656
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ + H L+ +P +I +A+ +H + V +M+S +V S +
Sbjct: 40 ESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSA 99
Query: 128 LLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L+ + + K L IM++ + ++N+L+ G S A +F M +
Sbjct: 100 LIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC 159
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
L P V++ T+I GLC R+ EA +L ++M + KP++ F++LI G C G++
Sbjct: 160 LIPDCVSYNTVINGLCKGKRLVEAKELFKEM-KGGECKPNSVTFSALIDGFCKNGDVEEG 218
Query: 247 LGFKEEMVRNKIEMD 261
G EEM + +E D
Sbjct: 219 FGLLEEMEKMGLEGD 233
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYXQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ L+R +KD + ++ +F + N F Y +L +L
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVL-------RLVS 63
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F + ++ ++K + VV E+I+ ++ YGR +L+VF +M F+ + K
Sbjct: 64 ANKFKAAEDLIVRMKIENCVVSEDILL-SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK 122
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
++ T+L ++ +++ ++ M E + P S N+L+ C ++ K+F E
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 182
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M KR P T+GTLI GLC R+DEA KL +M+ + P + SLI GLC
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSK 241
Query: 242 ELSLALGFKEEMVRNKIE 259
+ A+ + EEM IE
Sbjct: 242 NVDEAMRYLEEMKSKGIE 259
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTD 143
P+ + +IS R ++ A ++F EM + TV ++ +L+N + +D M
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L ++ K + P+ +Y+ LM G R A ++F+ M+ R +P +VT+ TLI GLC
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
E ++ EA++L D M + +KPDA ++ +I G CA+ + A F +EM+ I
Sbjct: 310 EQKIQEAVELL-DRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGI 363
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ L++F EM ++ TL++ + G+ID LF +++EK +P +Y
Sbjct: 173 VDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G S+ +++A + +EM + ++P + T+ +L+ GLC + R +A++L E MM
Sbjct: 233 LINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFE-MMMAR 291
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+P+ + +LI GLC ++ A+ + M ++ DA
Sbjct: 292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 106/244 (43%), Gaps = 42/244 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L R DE +++ ++ + P + + ++I+ ++ ++ A++ +EM
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMV-EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
S ++ V ++++L++ + G+ + +LF++M + P+ +Y L+ G +++
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------------- 217
++A ++ D M + L+P +G +I G C + EA ++M
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 218 -------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
MR + + + SL+K LC GE A+ +E
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433
Query: 253 MVRN 256
+V +
Sbjct: 434 IVTD 437
>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
Length = 702
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 4/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++I+ L D + L+ V P+ + + ++S + L++AL +
Sbjct: 157 NLQTYNIILRSLCARGDVDRAVSLFSSLRRRG-VAPDRVTYSTLMSGLAKHDQLDNALDL 215
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
DEM ++ VQ +N LL+ G ++ +++ + + SP+ +Y +++ G
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R ++A +V+ M+ Q VT+G LI+GLC VD A ++ DM++ + D
Sbjct: 276 KLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKA-GLVLDV 334
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
V+ SLIKG C VG A F +
Sbjct: 335 SVYNSLIKGFCEVGRTGEAWKFWDS 359
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 110/209 (52%), Gaps = 2/209 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++ L + M E ++L QL++D P+++ F +I A ++ ++
Sbjct: 371 YNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDA 430
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
+ + V S+++++N G+ ++++ M K P++ YN L++G ++
Sbjct: 431 RNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKI 490
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA K++ EM PT++T+ TLI GLC + EA L ++M+ KPD + +AS
Sbjct: 491 NDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLE-RGFKPDIRTYAS 549
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI+GLC ++ +AL +E++ +++D
Sbjct: 550 LIRGLCRDKKVDVALRIWDEILDAGLQVD 578
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 104/213 (48%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I + + + ++ + D P ++ +I+ + R + A+++
Sbjct: 438 DVFSYSSMINRFCKDGRTHDANEVYKNMVKDG-CKPNSHVYNALINGFCRVSKINDAIKI 496
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ EM+S T+ ++NTL++ + K + L +++E+ PD +Y L+ G
Sbjct: 497 YIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCR 556
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++ A +++DE+L LQ ++ LI+GLC +VDEA + + M+ N P+
Sbjct: 557 DKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLE-MKEKNCSPNLV 615
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ G +G + A ++ N ++ D
Sbjct: 616 TYNTLMDGFYEIGSIDKAASLWTAILDNGLKPD 648
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 99/196 (50%), Gaps = 3/196 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ +I L +A+ + E + ++ + P+ + ++I R + ++ AL+++
Sbjct: 509 IITYNTLIDGLCKAEKYQEASSLTKEML-ERGFKPDIRTYASLIRGLCRDKKVDVALRIW 567
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
DE+ +Q V N L++ + + GK+D ++ ++ EK SP+ +YN LM G
Sbjct: 568 DEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEI 627
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++ A ++ +L L+P +VT+ T I GLC R E + L +++ + P
Sbjct: 628 GSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLAT-GIMPTVIT 686
Query: 230 FASLIKGLCAVGELSL 245
++ L++ + G + +
Sbjct: 687 WSILVRAVIKYGPIQI 702
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 5/211 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++++ RA M D L P ++ + RAR A F +S
Sbjct: 88 VVLSAFSRALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSH 147
Query: 116 FNVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
R + +++N +L ++ G +DR LF + + V+PD +Y+ LM G
Sbjct: 148 GAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHD 207
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+L++A + DEM +Q V + L+ G ++A+K+ E ++R P+ +
Sbjct: 208 QLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATY 267
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ GLC +G A M+ N + D
Sbjct: 268 KVMLDGLCKLGRFKEAGEVWSRMMANNHQAD 298
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 2/209 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +++ R MF++ ++ QL D P + ++ + + A +V+ M
Sbjct: 231 YNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRM 290
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ N Q ++ L++ + G +D ++ M K + D YN L+ G R
Sbjct: 291 MANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRT 350
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+AWK +D ++ + T+ + GL V EA +L + + + PD F +
Sbjct: 351 GEAWKFWDSTGFSGIR-QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGT 409
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI GLC G + A E+ + E+D
Sbjct: 410 LIHGLCENGYANRAFEILEDARNSGEELD 438
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEM----LKRRLQPTLVTFGTLIYGLCLELRVD 208
+P S+N L+ V +RR DA F + RR+ P L T+ ++ LC VD
Sbjct: 116 NPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVD 175
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
A+ L + R V PD +++L+ GL +L AL +EM ++ DA
Sbjct: 176 RAVSLFSSLRR-RGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADA 228
>gi|297798228|ref|XP_002866998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312834|gb|EFH43257.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 411
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 110/206 (53%), Gaps = 14/206 (6%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
+ S LR + DP AL+++ N ++ A P+ RY +L + +L + + F ++
Sbjct: 35 KAKSTLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDI 86
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+ ++ K+D ++ EE + +I YGRA + +HA++ F++M + R+ SFN LLN
Sbjct: 87 ETLIESHKNDPKI-KEEPFYSTLIRSYGRASMFDHAMRTFEQMDQYGTPRSAVSFNALLN 145
Query: 131 AMLTCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
A L K D++ LF +I ++Y + PD SY IL+ S + A ++ +M + +
Sbjct: 146 ACLHSKKFDKVPQLFDEIPQRYNKIVPDKISYGILIKSYCDSGSPQKAIEIMRQMQGKGM 205
Query: 188 QPTLVTFGTLIYGLCL--ELRVDEAL 211
+ T + F T++ L EL V E+L
Sbjct: 206 EVTTIAFTTILSSLYKKGELEVAESL 231
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 37/222 (16%)
Query: 64 AKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+K FD+V Q+ ++ + ++VP++I + +I Y + + A+++ +M ++ T
Sbjct: 150 SKKFDKVPQLFDEIPQRYNKIVPDKISYGILIKSYCDSGSPQKAIEIMRQMQGKGMEVTT 209
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------------------- 151
+F T+L+++ G+++ L+ M K
Sbjct: 210 IAFTTILSSLYKKGELEVAESLWNEMVKKGCELDNAAYNVRIMSAQKESPERVKELIEEM 269
Query: 152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SYN LM L++A KV++ + P TF TLI+ LC
Sbjct: 270 STMGLKPDTISYNYLMTAYCEKGMLDEAKKVYEGLEGNNCAPNSATFRTLIFHLCYSRLY 329
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
++ + + + ++ + PD L GL ++ A G
Sbjct: 330 EQGYAIFKKSVYMHKI-PDFNTLKHLAVGLVEKKKIDDAKGL 370
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L++ L + + IL+ +P+ F +I Y + R ++ A+++
Sbjct: 425 DIWTYNLVVNGLCKMGCLSDANGILNDAIAKG-CIPDIFTFNTLIDGYCKQRNMDKAIEI 483
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M S + V ++NTLLN + K+D + D F+ M EK +P+ +YNIL+
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCK 543
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ +A ++F EM R L P +VT TLI GLC +D+A +L + + Y
Sbjct: 544 DRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTA 603
Query: 229 VFASLIKGLCAVGELSLA 246
+F +I C +S+A
Sbjct: 604 IFNIMINAFCXKLNVSMA 621
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 138/297 (46%), Gaps = 48/297 (16%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
MN+A P +A+++R Q DP AL++F N TE F++ L Y +I K
Sbjct: 1 MNRA--LQPKHVAAVIRYQNDPLNALKMF-----NQVKTE----DGFKHTLETYKCMIEK 49
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG F+ ++ +L +++ + E ++ ++ YGR ++ A+ VF+ M ++ +
Sbjct: 50 LGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEP 109
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD------------------------ 155
+V+S+N ++N ++ G + ++ M+ + PD
Sbjct: 110 SVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLL 169
Query: 156 ------ACSYNILMHGCVVSRRLE-----DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
C +N + + V+S + +A+ +FDEMLK+ + P ++TF LI+ LC +
Sbjct: 170 NNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKK 229
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V E+ KL +M+ V P+ F I+GLC G + A E +V + D
Sbjct: 230 GNVQESEKLFSKVMK-RGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPD 285
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+ II +A M +IL +P+E + ++I+ + A+ V
Sbjct: 320 NEFTYNTIINGFCKAGMMQNADKILRDAMFKG-FIPDEFTYSSLINGLCNDGDMNRAMAV 378
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F E + ++ +NTL+ + G + + L + +ME SPD +YN++++G
Sbjct: 379 FYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCK 438
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L DA + ++ + + P + TF TLI G C + +D+A+++ + M+ + + PD
Sbjct: 439 MGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLS-HGITPDVI 497
Query: 229 VFASLIKGLCAVGEL 243
+ +L+ GLC +L
Sbjct: 498 TYNTLLNGLCKARKL 512
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 3/200 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL +++ I L R DE ++L + + + P+ I + +I + + L A
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEG-LTPDVISYNTLICGFCKHSKLVEAECY 308
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+M + V+ ++NT++N G + + + M K PD +Y+ L++G
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A VF E +++ + +++ + TL+ GL + V +AL+L +DMM + PD
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMME-HGCSPDIW 427
Query: 229 VFASLIKGLCAVGELSLALG 248
+ ++ GLC +G LS A G
Sbjct: 428 TYNLVVNGLCKMGCLSDANG 447
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 15/249 (6%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
T R+ S + P AL+L N P + +N + Y +I+ +
Sbjct: 148 THTIRMKSFC-ITGRPTAALRLLNN----------MPGQGCEFNAVSYCAVISGFYKENC 196
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
E + ++ + P+ + F +I + ++ + ++F ++ V + +FN
Sbjct: 197 QIEAYHLFDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFN 255
Query: 127 TLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+ + G ID L + I+ + ++PD SYN L+ G +L +A +M+
Sbjct: 256 IFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNS 315
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
++P T+ T+I G C + A K+ D M PD ++SLI GLC G+++
Sbjct: 316 GVEPNEFTYNTIINGFCKAGMMQNADKILRDAM-FKGFIPDEFTYSSLINGLCNDGDMNR 374
Query: 246 ALG-FKEEM 253
A+ F E M
Sbjct: 375 AMAVFYEAM 383
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
+++++ + PD ++N L+H ++++ K+F +++KR + P L TF I GLC +
Sbjct: 206 EMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKG 265
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+DEA +L E ++ + PD + +LI G C +L A + +MV + +E
Sbjct: 266 AIDEAARLLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVE 318
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 117/236 (49%), Gaps = 11/236 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A++L+ QKDP AL++F + + F+++LL Y II KLG F
Sbjct: 7 PKHVAAVLKQQKDPLKALEMF---------NKVKREDGFKHSLLTYKCIIQKLGFHGNFV 57
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
++ +L + + D E ++ + YGR ++ A+ VF+ M +N + +V S+N +
Sbjct: 58 AMENVLAETRMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAI 117
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N ++ G + +F M+ + PD ++ I + ++R A ++ + M+ +
Sbjct: 118 MNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGC 177
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
Q V + T++ G E EA +L DM+R+ + PD F L+ LC GE+
Sbjct: 178 QLNAVAYCTVVAGFYEENYRVEAYELFNDMLRI-GIFPDVSTFNKLLHTLCKKGEV 232
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++ L +A +E ++ ++ + + P+ + F +IS + L+ A Q+
Sbjct: 530 NKITYNILTESLCKAGKVNEALDLVDEIL-NKGITPDTVSFATIISGFANNGDLKGAYQL 588
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
F M + V T ++N ++NA + LF ++ +PD +Y +++ G
Sbjct: 589 FRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFC 648
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
++ + +K EM+++ P+L TFG +I LC++ RV EA+ +
Sbjct: 649 ITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDI 694
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-Q 146
+ +C V++ + A ++F++M + V +FN LL+ + G++ L +
Sbjct: 182 VAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNK 241
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
+++K + + ++NI + G L A + D +++ L P +VT+ TLI GLC
Sbjct: 242 VLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSN 301
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
V EA K ++ ++PD + +LI G C +G L A
Sbjct: 302 VVEAEKYLHKLVNG-GLEPDGFTYNTLIDGYCKMGMLQNA 340
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 4/202 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L+I L + + +++ V P+ F +I Y + +E +Q+
Sbjct: 425 DIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYV-PDVFTFNTLIDGYCKQLKMETTIQI 483
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M S V V ++N++LN + K + + + F+ M EK P+ +YNIL
Sbjct: 484 LNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCK 543
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ +A + DE+L + + P V+F T+I G + A +L M Y V
Sbjct: 544 AGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTA 603
Query: 229 VFASLIKGLCAVGELSLALGFK 250
+ +I +L L +G K
Sbjct: 604 TYNIMINAFAE--KLDLHMGEK 623
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 90/185 (48%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + M ++IL Q VP+E +C++I+ + ++ AL +F+
Sbjct: 324 YNTLIDGYCKMGMLQNAEKIL-QGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAA 382
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ TV +N L+ + G I + + M E S D +YN++++G +
Sbjct: 383 LGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCV 442
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA + ++ + + P + TF TLI G C +L+++ +++ M + V PD + S
Sbjct: 443 SDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWS-HGVTPDVITYNS 501
Query: 233 LIKGL 237
++ GL
Sbjct: 502 VLNGL 506
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDAC 157
R +L A+ + D + + V ++NTL+ + ++ L +++ + PD
Sbjct: 263 RKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGF 322
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN L+ G L++A K+ + + P T+ +LI GLC +D AL L
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAA 382
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +KP ++ LIKGLC G + AL EM N D
Sbjct: 383 LG-KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSD 425
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL +++ I L R M +L + + + P+ + + +I + + A +
Sbjct: 250 NLFTFNIFIQGLCRKGMLSGAMSMLDSVIREG-LTPDVVTYNTLICGLCKNSNVVEAEKY 308
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
++ + ++ ++NTL++ G + + Q I + +V PD +Y L++G
Sbjct: 309 LHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFV-PDEFTYCSLINGLC 367
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ ++ A +F+ L + L+PT++ + LI GLC E + +AL++ +M D
Sbjct: 368 QNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSE-NGCSSDI 426
Query: 228 QVFASLIKGLCAVGELSLA 246
+ +I GLC +G +S A
Sbjct: 427 WTYNLVINGLCKMGCVSDA 445
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 4/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L +A +++ + + + VP +I + + +A + AL +
Sbjct: 495 DVITYNSVLNGLSKAVKNEDLMETFETMV-EKGCVPNKITYNILTESLCKAGKVNEALDL 553
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKY-VSPDACSYNILMHGCV 167
DE+ + + SF T+++ G + LF+ M E+Y VS +YNI+++
Sbjct: 554 VDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFA 613
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L K+F EM P T+ +I G C+ D K +M+ P
Sbjct: 614 EKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIE-KGFIPSL 672
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
F +I LC + A+ MV N I
Sbjct: 673 TTFGRVINCLCVQHRVHEAVDIIHFMVHNGI 703
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y++++ L D + L+ +V P+ I + ++ + L+HAL +
Sbjct: 157 NLQTYNIVLRSLCARGDLDRAVTLFDSLRR-RQVAPDCITYSTLMCGLAKQDRLDHALDL 215
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
DEM VQ V +N LL G+ +++ ++ + + P+ +YN+++ G
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R ++ +V++ M+ LQP ++T+G LI+GLC VD A ++ ++++ + DA
Sbjct: 276 KFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT-GLVIDA 334
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
++ SL+KG C G + A F +
Sbjct: 335 AMYNSLVKGFCQAGRVQEAWKFWDS 359
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 106/213 (49%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I L + M DE ++ L+ D +P+ + F +I + A +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+E Q V S+++++N + G++ +++ M+K P++ YN L+ G
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R DA +++ +M PT++T+ TLI GLC + EA + +M+ PD
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NGFTPDIT 545
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI+GL + ++ AL ++++ +++D
Sbjct: 546 TYGSLIRGLFSDKKIDDALSIWKQILYKGLKVD 578
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 63 RAKMFDEVQQILHQLKHDT---RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
RA+ F + L H R+ P + V+ L+ A+ +FD + V
Sbjct: 131 RARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVA 190
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKV 178
+++TL+ + ++D DL M + V PD YN L+ GC + E +V
Sbjct: 191 PDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRV 250
Query: 179 FDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+D+++K +P L T+ ++ GLC R E ++ E M+ N++PD + LI GL
Sbjct: 251 WDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMV-ANNLQPDVITYGILIHGL 309
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C G++ A E+++ + +DA
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDA 334
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L + ++ ++ D P I+ +IS + + A+++
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDG-CKPNSHIYNALISGFCQVYRTSDAVRI 496
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ +M+ TV ++NTL++ + K + + +++E +PD +Y L+ G
Sbjct: 497 YSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFS 556
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++DA ++ ++L + L+ ++ LI+GLC +VDEAL + DM N P+
Sbjct: 557 DKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLV 616
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ GL G + A + + +E D
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPD 649
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 106/220 (48%), Gaps = 2/220 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + +++ Y+ ++ +A F++V ++ +L D P + ++ +
Sbjct: 220 PRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGR 279
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
+ +V++ M + N+Q V ++ L++ + G +D ++ +I++ + DA YN
Sbjct: 280 FKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNS 339
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + R+++AWK +D L+ L T+ +I GL VDEA++L + + +
Sbjct: 340 LVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDV 398
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD F +LI GLC G + A EE + ++D
Sbjct: 399 ACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLD 438
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 14/193 (7%)
Query: 82 RVVPEEIIFCN--------VISFYGRARLLEHALQVFDEMSSFNVQRTV----KSFNTLL 129
R +P I+ CN ++ + RAR A F +S R + +++N +L
Sbjct: 107 RALPS-ILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165
Query: 130 NAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
++ G +DR LF + + V+PD +Y+ LM G RL+ A + DEM + +Q
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQ 225
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P +V + L+ G ++ +++ + +++ +P+ + ++ GLC G
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285
Query: 249 FKEEMVRNKIEMD 261
E MV N ++ D
Sbjct: 286 VWERMVANNLQPD 298
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 4/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I+ + + +I ++ D P I + +I +A + A V EM
Sbjct: 477 YNALISGFCQVYRTSDAVRIYSKMA-DNGCSPTVITYNTLIDGLCKAEKYQEASSVAREM 535
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ +L+ + + KID ++ QI+ K + D +NIL+HG + ++
Sbjct: 536 VENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595
Query: 173 EDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++A VF +M K+ P LVT+ TL+ GL +D+A L + ++PD +
Sbjct: 596 DEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITE-DGLEPDIISYN 654
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+ IKGLC+ + + +E++ I
Sbjct: 655 TRIKGLCSCDRIHEGIQLLDEVLSRGI 681
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 97/198 (48%), Gaps = 4/198 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L +A+ + E + ++ + P+ + ++I + ++ AL +
Sbjct: 508 TVITYNTLIDGLCKAEKYQEASSVAREMVENG-FTPDITTYGSLIRGLFSDKKIDDALSI 566
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCV 167
+ ++ ++ V N L++ + + GK+D +F M+ K P+ +YN LM G
Sbjct: 567 WKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLY 626
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ ++ A ++ + + L+P ++++ T I GLC R+ E ++L ++++ + P
Sbjct: 627 ETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLS-RGIIPTV 685
Query: 228 QVFASLIKGLCAVGELSL 245
+ L++ + G + +
Sbjct: 686 ITWNILVRAVIKYGPIQV 703
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEH 105
F ++ Y +I L K D+ I Q+ + V +++ N+ I A ++
Sbjct: 540 FTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKV--DVMMHNILIHGLCSAGKVDE 597
Query: 106 ALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL VF +M N + ++NTL++ + G ID+ L+ I E + PD SYN +
Sbjct: 598 ALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRI 657
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
G R+ + ++ DE+L R + PT++T+ L+
Sbjct: 658 KGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692
>gi|108710734|gb|ABF98529.1| expressed protein [Oryza sativa Japonica Group]
gi|125545490|gb|EAY91629.1| hypothetical protein OsI_13265 [Oryza sativa Indica Group]
Length = 771
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMH 164
VF EMS + ++ +N ++A ++D LF M+ + PD C++N L+
Sbjct: 211 HVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIR 270
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
VV R+ DA V+DEM ++P + T+ ++ G C R+D+AL+L ++M Y VK
Sbjct: 271 ALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVK 330
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
DA V+ SL+ GL +L A GF E MV + I+ A
Sbjct: 331 GDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSA 368
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++T + +V ILH+ ++ P +I N +I G+ E A + E
Sbjct: 613 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISE 670
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+S V + +NTL+N + GK+D L QI+ + + PD ++N L++ + R
Sbjct: 671 LSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGR 730
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L++A K +M+ + P T L++
Sbjct: 731 LKEADKYLRKMIAEGIAPNYATETILVF 758
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 591 LSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDIATYNL 650
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + E A + E+ K+ + +V + TLI L +VDEA L E ++
Sbjct: 651 IIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIG-R 709
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + +M+ I
Sbjct: 710 GIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGI 746
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 2/202 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L +AK + I + + VP+ + + +I + + L A +++ +M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
N V ++N LN ++ G+I +++ M SPD +Y+ L+HG ++R+
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++F+ M+ R +P VT+ L++GLC E + DEA +L M+ PD + +
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVE-RGCDPDRVTYTT 627
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ G C VG++ A+ +EMV
Sbjct: 628 LLYGFCNVGKIEQAVEVFDEMV 649
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ ++ L + DE ++ ++ + P+ + + ++ + +E A+
Sbjct: 584 RPNAVTYNCLLHGLCKESKPDEAHELFRKMV-ERGCDPDRVTYTTLLYGFCNVGKIEQAV 642
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VFDEM S V ++N LL GK LFQ+M + PD S+NI++ G
Sbjct: 643 EVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGL 702
Query: 167 VVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++RL+DA +VF+ M + P LVT+ +LI+GLC E R+ EA+K+ +++ R+ + P
Sbjct: 703 SKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRL-KLSP 761
Query: 226 DAQVFASLIKGL-CAV 240
D F L++ + C +
Sbjct: 762 DPHAFNVLLEAIKCGI 777
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y +I A+ D+ ++ + R P + + ++ + + A +
Sbjct: 551 DVITYSTLIHGFSLARKHDQAHELFETMISRGCR--PNAVTYNCLLHGLCKESKPDEAHE 608
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+F +M ++ TLL GKI++ ++F +++ K PD +YN L+ G
Sbjct: 609 LFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFF 668
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + +A ++F M+ R+ +P V+ +I GL R+D+A+++ E M + + PD
Sbjct: 669 RAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDL 728
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLC LS A+ +E+ R K+ D
Sbjct: 729 VTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPD 762
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 83/172 (48%), Gaps = 2/172 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ I+ ++ + + L+ A ++F EM+ ++ L+ + GKI++ +
Sbjct: 267 PDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFE 326
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M++ +S Y++L+ + S R++ A + E+ R +QP+ T ++I LC
Sbjct: 327 ACRTMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCK 386
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
RVD AL L E M++ PD + LI LC ++ A F + M R
Sbjct: 387 AGRVDSALSLLETMIK-RGYCPDMATHSMLINELCKADKIQEAQEFLQGMDR 437
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 10/208 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F++++ Y+ ++ KL R + + Q+ ++ VVP + ++ R +
Sbjct: 123 RNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQG-VVPNGFTYAVLVQSSCYERNSD 181
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTC----GKIDRMTDLF-QIMEKYVSPDACSY 159
A++ F EM V + K +TL + C GK + +F + +EK V+ +
Sbjct: 182 EAVRFFGEM----VDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLK 237
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ V+ + +A K+F M+K +P + ++ C +DEA KL +M
Sbjct: 238 KALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAV 297
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ + + + GLC G++ A
Sbjct: 298 ESKAPLNNVAWTAFLSGLCKSGKIEQAF 325
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
E++ N+Q + + ++++ + G++D L + M ++ PD ++++L++ +
Sbjct: 364 EIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKAD 423
Query: 171 RLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A + M ++ + ++ +L+ LC +V +A + M+ + PD
Sbjct: 424 KIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVV 483
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
++ LI G C + EL A ++M+
Sbjct: 484 SYSILIDGFCKIDELGRAEKLYKQMI 509
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 128/242 (52%), Gaps = 13/242 (5%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQ 72
P + +L N + N+E L+ FR+ NL ++ II LGRA + +
Sbjct: 8 PSIDHELVYNVLHSAKNSE-HALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARC 66
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
IL + + +E ++ +I YG+A +++ ++++F +M V+RT+KS++ L +
Sbjct: 67 ILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVI 125
Query: 133 LTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L G+ F +++ + + P ++N++M G +S ++E A + F++M R + P +
Sbjct: 126 LRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDV 185
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
VT+ T++ G C +++EA K + M+ N++P + +LIKG +V + AL E
Sbjct: 186 VTYNTMVNGYCRVKKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVE 244
Query: 252 EM 253
EM
Sbjct: 245 EM 246
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 72/278 (25%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA----- 106
+ ++L+ L AK + Q ++ +I GRA L HA
Sbjct: 10 IDHELVYNVLHSAKNSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILL 69
Query: 107 ------------------------------LQVFDEMSSFNVQRTVKSFNTL-------- 128
+++F +M V+RT+KS++ L
Sbjct: 70 DMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRG 129
Query: 129 --------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYN 160
N ML+ GK++ F+ M+ + + PD +YN
Sbjct: 130 RYMMAKRYFNKMLSEGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYN 189
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+++G +++E+A K F EM R ++PT+VT+ TLI G RVD+AL+L E+ M+
Sbjct: 190 TMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEE-MKG 248
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +KP+A +++L+ GLC ++S A +EMV I
Sbjct: 249 FGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYI 286
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P+ + + +++ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 IMPDVVTYNTMVNGYCRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+++ + PT + F LI G
Sbjct: 241 RLVEEMKGFGMKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C GE A+ ++++ I
Sbjct: 301 QCKAGDLDAAANVLKAMIRL-SVPTEAGHYGVLIENYCKAGEYDKAIKLLDKVIEKDI 357
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 96/171 (56%), Gaps = 3/171 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + + AL VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M V PD +Y++L++G +++DA ++FDEML + L P VTF TLI G C
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM
Sbjct: 257 KNGRVDLAMEVYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 306
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I + +
Sbjct: 202 HASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DKGLVPNGVTFTTLIDGHCK 257
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++V+ +M S ++ + ++NTL+ + G + + DL M K + PD S
Sbjct: 258 NGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKIS 317
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC LE A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 318 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREML 377
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V ++PD + +I C G++ +EM R+
Sbjct: 378 SV-GLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 414
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 96/167 (57%), Gaps = 4/167 (2%)
Query: 74 LHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
L++ + R P+ ++ CN VI +A+ ++ A +V +EMS V ++N LL+ +
Sbjct: 279 LYEEMTEKRFSPD-VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 337
Query: 133 LTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+D+ +LF M + +PD SY+++++G + ++ DA +FD M++R+L P +
Sbjct: 338 CKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDV 397
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
VTF L+ GLC ++DEA L D+M +NV PD +L+ GLC
Sbjct: 398 VTFNILMDGLCKAGKLDEAKDLL-DVMSEHNVLPDGVTCTTLMHGLC 443
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 116/219 (52%), Gaps = 9/219 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++L + +I L +AK D+ ++L ++ VP+ + + ++ + L++
Sbjct: 286 KRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSK-IGAVPDVVTYNILLDGLCKTNLVD 344
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A ++F M + S++ +LN + K+ LF +++E+ + PD ++NILM
Sbjct: 345 KAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILM 404
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---V 220
G + +L++A + D M + + P VT TL++GLC + R DEA++L + M+ V
Sbjct: 405 DGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTV 464
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+V P V A GLC G+L+ AL F + MV++ E
Sbjct: 465 ADVLPHNIVLA----GLCREGKLAQALLFFKSMVKSDGE 499
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I L + + + ++L ++ P+ I + ++S R + A Q
Sbjct: 79 NTVAYNALINGLCKDENIERAYKLLEEMAS-KGYEPDNITYNTILSGLCRMGKVSEAKQF 137
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME---KYVSPDACSYNILMHGC 166
FD M S V ++N LL+A+ GK+ LF+ M+ + V+PD +YN L+ G
Sbjct: 138 FDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGF 197
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++A K+F +++ + P VT+ +++ GL + +DEA ++ + M+ P+
Sbjct: 198 CRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVD-SGCAPN 256
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ ++ G C VG ++ L EEM + D
Sbjct: 257 GATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPD 291
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +IS + + AL++ +EM+ V V ++ +++ + GK+D +L
Sbjct: 8 PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++E+ S + +YN L++G +E A+K+ +EM + +P +T+ T++ GLC
Sbjct: 68 FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127
Query: 204 ELRVDEALKLKEDM-MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+V EA + + M R Y+ PD + L+ L G+++ A G + M
Sbjct: 128 MGKVSEAKQFFDSMPSRGYS--PDVVAYNGLLDALYKEGKVAEAWGLFKTM 176
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + + Y+ I+ L R DE +++ ++ D+ P + V+S + R +
Sbjct: 216 KGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV-DSGCAPNGATYSIVLSGHCRVGNMA 274
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILM 163
L++++EM+ V N +++ + K+D + + M K + PD +YNIL+
Sbjct: 275 RCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILL 334
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + ++ A ++F M+ P +V++ ++ GLC +V +A L + M+ +
Sbjct: 335 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE-RKL 393
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
PD F L+ GLC G+L A
Sbjct: 394 VPDVVTFNILMDGLCKAGKLDEA 416
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y II+ L + E +++ ++ + V P+ + ++ RA ++
Sbjct: 4 KGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMT-EKGVNPDVATYTIIVDRLCRAGKVD 62
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A ++F +M ++N L+N + I+R L + M K PD +YN ++
Sbjct: 63 EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYN 222
G ++ +A + FD M R P +V + L+ L E +V EA L + M M
Sbjct: 123 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK 182
Query: 223 VKPDAQVFASLIKGLCAV 240
V PD + +LI G C V
Sbjct: 183 VAPDLITYNTLIDGFCRV 200
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
M+ + V +++T+++ + GK+ ++ + M EK V+PD +Y I++ + +
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A ++F +M++R V + LI GLC + ++ A KL E+M +PD +
Sbjct: 61 VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMAS-KGYEPDNITYN 119
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
+++ GLC +G++S A F + M
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSM 141
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I R + DE ++ + +P+ + + +++ R ++ A ++
Sbjct: 186 DLITYNTLIDGFCRVEKTDEAMKLFKDVIA-KGYMPDTVTYNSILLGLARKSNMDEAEEM 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M +++ +L+ G + R +L++ M EK SPD N ++
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCK 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++++DA KV +EM K P +VT+ L+ GLC VD+A +L M+ PD
Sbjct: 305 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD-NGCAPDIV 363
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ ++ GLC ++ A + M+ K+
Sbjct: 364 SYSVVLNGLCKTNKVHDARVLFDRMIERKL 393
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ L + + D+ ++ + D P+ + + V++ + + A +
Sbjct: 326 DVVTYNILLDGLCKTNLVDKAHELFSTMV-DNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FD M + V +FN L++ + GK+D DL +M ++ V PD + LMHG
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCR 444
Query: 169 SRRLEDAWKVFDEMLKR-------------------------------------RLQPTL 191
+R ++A ++F M+++ P +
Sbjct: 445 DKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDV 504
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
VT+ TL+ L RVD+A+ + M PD + +L+ GL
Sbjct: 505 VTYTTLVNALIEAGRVDQAVDYFQQMTG-SGCAPDYVAYNTLMNGL 549
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ L Y II + + +IL +L + V P+ + +++ Y + ++ A V
Sbjct: 352 DALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 410
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
+D M + ++ +FN L++ + GK DR LF+ M ++ V P SY IL+ G
Sbjct: 411 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLG 470
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R+ +A+ F EM+ R + P T+ +LIY L R+ EA KL EDM+++ V PD
Sbjct: 471 KAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL-GVNPDV 529
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
Q +++LI GL + A +EM++
Sbjct: 530 QAYSALITGLIDSSMVDTAWDVFQEMMK 557
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+LL Y L GRA +E Q+L ++ P+ I++ ++I + A V
Sbjct: 288 SLLSYYL---SKGRA---EEAYQVLTEMTA-RGCAPDVILYTSLIDLLFSTGRVPEARHV 340
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FD M ++ T++ G ++ ++ ++M K V PD +YN LM G V
Sbjct: 341 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 400
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ A+ V+D M+ ++P VTF L++GL + + D A L ++M+ V P
Sbjct: 401 LERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLV 460
Query: 229 VFASLIKGLCAVGELSLA-LGFKEEMVRNKI 258
+ LI GL G +S A L F+E + R I
Sbjct: 461 SYTILIDGLGKAGRVSEAFLQFQEMIDRGII 491
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +K DE ++ +LK P + + VI +A +E L+
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKT-AGCSPNVVAYTAVIDGLLKAGRIEDGLKN 165
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+EMS + T ++ +++ + + +F Q+++K PD +Y L+ G
Sbjct: 166 FEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 225
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A K+ D ML + +PT VT+G++++G C ++EA ++ MR +P
Sbjct: 226 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA-QMRERGCEPGLF 284
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+F SL+ L+ G EE + EM A
Sbjct: 285 IFTSLLS-------YYLSKGRAEEAYQVLTEMTA 311
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 96/184 (52%), Gaps = 11/184 (5%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + + +I + + +E A ++ + M+ V ++N+L++ + K++R+
Sbjct: 350 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV---KLERVDQ 406
Query: 144 LFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLI 198
F + ++ V+ P+A ++N+LMHG + + A+ +F EML K + PTLV++ LI
Sbjct: 407 AFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILI 466
Query: 199 YGLCLELRVDEA-LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
GL RV EA L+ +E + R + P+ + SLI L G + A E+MV+
Sbjct: 467 DGLGKAGRVSEAFLQFQEMIDR--GIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 524
Query: 258 IEMD 261
+ D
Sbjct: 525 VNPD 528
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 19/213 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-------RL 102
++ Y+ +I+ L DE + + + D P+ I F +I + +A +L
Sbjct: 6 TIVSYNTVISGLASIDKMDEAYKFFNSMI-DNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
L AL+ F + V + ++++ G +D T F+ + S D SY +
Sbjct: 65 LNQALKRF--------RPDVFLYTSVIHGYCKAGDLD--TGYFRAVTPKASLDVISYTTV 114
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G S+R+++A ++F+E+ P +V + +I GL R+++ LK E+M
Sbjct: 115 IKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSC 174
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V P + +I GLC L A E+MV+
Sbjct: 175 V-PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQ 206
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A +KP N + +++++ L + D + ++ V P + + +I G+A
Sbjct: 416 ASGIKP---NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKA 472
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+ A F EM + ++ +L+ ++ G+I L + M K V+PD +Y
Sbjct: 473 GRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 532
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ L+ G + S ++ AW VF EM+KR P VT+ L G
Sbjct: 533 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P SYN ++ G ++++A+K F+ M+ +P ++ F TLI+G C + KL
Sbjct: 5 PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++ + +PD ++ S+I G C G+L
Sbjct: 65 LNQALKRF--RPDVFLYTSVIHGYCKAGDL 92
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+PT+V++ T+I GL ++DEA K M+ +PD F +LI G C G+
Sbjct: 4 EPTIVSYNTVISGLASIDKMDEAYKFFNSMID-NGCEPDVIAFTTLIHGFCKAGQ 57
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 115/206 (55%), Gaps = 5/206 (2%)
Query: 61 LGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
LGR + + + L ++ +R V E F +++ + RA L + +++VF M S V
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAW 176
+V +FN+LL +L G+ + ++ +++ Y V+PD ++NIL+ G ++ ++D +
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGF 240
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDAQVFASLIK 235
++F+++ + +P +VT+ TL+ GLC +V A + + M + ++ P+ + +LI+
Sbjct: 241 RIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIR 300
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
G CA E+ AL EEMV ++ +
Sbjct: 301 GYCAKREIEKALAVFEEMVNQGLKAN 326
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M +++ ++ V P+ F +I + +++ ++F+++S F
Sbjct: 193 ILLKRGRTNM---AKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRF 249
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
+ V ++NTL++ + GK+ ++ + M K ++P+ +Y L+ G R +E
Sbjct: 250 GCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE 309
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A VF+EM+ + L+ +T+ TLI GLC + ++ + E PD F +L
Sbjct: 310 KALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTL 369
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ C G L AL E M KI+ D+
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQPDS 398
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 10/217 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ L RA ++ + K + P + + +I Y R +E AL
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGC 166
VF+EM + ++ ++NTL+ + K +++ D+ + + SPD C++N LMH
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRV 220
+ L+DA KVF+ M + ++QP T+ L+ LC ++A L ++ ++
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSG 433
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRN 256
KP + + K LC G+ A F++ M R
Sbjct: 434 DGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG 470
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 49/245 (20%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N + Y+ +I L A+ F++++ IL D P+ F ++ + A L+
Sbjct: 321 QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLD 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV--SPDAC---- 157
AL+VF+ MS +Q +++ L+ ++ G ++ DL +++E+ + S D C
Sbjct: 381 DALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLV 440
Query: 158 -----------------------------------SYNILMHGCVVSRRLEDAWKVFDEM 182
SY L+ G E +++ M
Sbjct: 441 AAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLM 500
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
L++ P T+ +LI GL L +D+ AL+ E M+R + +P++ F S++ L
Sbjct: 501 LRKDFXPDFETYESLINGL---LHMDKPLLALQSLEKMLRSSH-RPNSSTFHSILAKLLE 556
Query: 240 VGELS 244
G S
Sbjct: 557 QGRAS 561
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-- 150
V+ G R ALQ F+ T +S+ ++L + ++ + +EK
Sbjct: 82 VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141
Query: 151 --YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
V +A +N LM + +++ KVF M + P++VTF +L+ L R +
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
A K+ ++M+ Y V PD F LI+G C G
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNG 234
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ L Y II + + +IL +L + V P+ + +++ Y + ++ A V
Sbjct: 607 DALTYGTIIQNFSKIGNVEAAGEIL-ELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEK-YVSPDACSYNILMHGCV 167
+D M + ++ +FN L++ + GK DR LF +++EK V P SY IL+ G
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLG 725
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R+ +A+ F EM+ R + P T+ +LIY L R+ EA KL EDM+++ V PD
Sbjct: 726 KAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKL-GVNPDV 784
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
Q +++LI GL + A +EM++
Sbjct: 785 QAYSALITGLIDSSMVDTAWDVFQEMMK 812
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 5/198 (2%)
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
GRA +E Q+L ++ P+ I++ ++I + A VFD M
Sbjct: 552 GRA---EEAYQVLTEMTA-RGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD 607
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFD 180
++ T++ G ++ ++ ++M K V PD +YN LM G V R++ A+ V+D
Sbjct: 608 ALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYD 667
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
M+ ++P VTF L++GL + + D A L ++M+ V P + LI GL
Sbjct: 668 RMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKA 727
Query: 241 GELSLALGFKEEMVRNKI 258
G +S A +EM+ I
Sbjct: 728 GRVSEAFSQFQEMIDRGI 745
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 79 HDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
H T ++P+ ++ CN++ + +AR ++ A+++F EM S + T+ S+NT+++ + + K
Sbjct: 12 HTTGLMPD-VVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDK 70
Query: 138 IDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+D F M + PD ++ L+HG + + + + ++ LK R +P + + +
Sbjct: 71 MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK-RFRPDVFLYTS 129
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+I+G C +D K+ E+M+ + PDA + LI LC +G + A E M ++
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCI-PDAAAYFVLIDPLCKLGRVDEAYELFERMRKS 188
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +K DE ++ +LK P + + VI +A +E L+
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKT-AGCSPNVVAYTAVIDGLLKAGRIEDGLKN 420
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F++MS + T ++ +++ + + +F Q+++K PD +Y L+ G
Sbjct: 421 FEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSK 480
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A K+ D ML + +PT VT+G++++G C ++EA ++ MR +P
Sbjct: 481 ASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIA-QMRERGCEPGLF 539
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+F SL+ L+ G EE + EM A
Sbjct: 540 IFTSLLS-------YYLSKGRAEEAYQVLTEMTA 566
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + + +I + + +E A ++ + M+ V ++N+L++ + K++R+
Sbjct: 605 APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV---KLERVDQ 661
Query: 144 LFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLI 198
F + ++ V+ P+A ++N+LMHG + + A+ +F EML K + PTLV++ LI
Sbjct: 662 AFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILI 721
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
GL RV EA ++M+ + P+ + SLI L G + A E+MV+ +
Sbjct: 722 DGLGKAGRVSEAFSQFQEMID-RGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV 780
Query: 259 EMD 261
D
Sbjct: 781 NPD 783
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
+E AL EM + + V + N +LN + KID+ +LF M P SYN
Sbjct: 1 MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G ++++A+K F+ M+ +P ++ F TLI+G C + L ++ +
Sbjct: 61 VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF 120
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+PD ++ S+I G C G+L EEM+ DA
Sbjct: 121 --RPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDA 159
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 100/196 (51%), Gaps = 6/196 (3%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ KLGR DE ++ +++ + + + + F +I L+ A +++ EM
Sbjct: 169 LCKLGRV---DEAYELFERMRK-SGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERG 224
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAW 176
+ ++ ++L+ A+ GK+D +++Q ++ K V+ +YN LM G R++D
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
K+ +M++ P + T+ L+ G R+D+AL+L + ++ Y KP+A + ++I+G
Sbjct: 285 KLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFK-LLSSYGCKPNAATYTTIIQG 343
Query: 237 LCAVGELSLALGFKEE 252
L + A F +E
Sbjct: 344 LYDAQRMEEAKAFFDE 359
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 91/187 (48%), Gaps = 4/187 (2%)
Query: 72 QILHQLKHDT--RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
Q+ H L + R P+ ++ +VI Y +A L+ ++ +EM + ++ L+
Sbjct: 107 QVGHMLLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLI 166
Query: 130 NAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ + G++D +LF+ M K D ++ L+ +L++A +++ EM++R +
Sbjct: 167 DPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYE 226
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P L +LI+ LC +VDEA ++ + ++ V + SL+ G C +G + L
Sbjct: 227 PYLEVQDSLIFALCKAGKVDEANEIYQTVV-AKKVATSRVAYNSLMDGYCKLGRVDDGLK 285
Query: 249 FKEEMVR 255
+MV
Sbjct: 286 LLLQMVE 292
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A +KP N + +++++ L + D + ++ V P + + +I G+A
Sbjct: 671 ASGIKP---NAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKA 727
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+ A F EM + ++ +L+ ++ G+I L + M K V+PD +Y
Sbjct: 728 GRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 787
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ L+ G + S ++ AW VF EM+KR P VT+ L G
Sbjct: 788 SALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 3/207 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q LK FR ++ Y +I +A D +IL ++ +P+ + +I +
Sbjct: 115 QALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLA-AGCIPDAAAYFVLIDPLCKLG 173
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
++ A ++F+ M +F TL+ A+ GK+D +L+ +++E+ P +
Sbjct: 174 RVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQD 233
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ + ++++A +++ ++ +++ + V + +L+ G C RVD+ LKL M+
Sbjct: 234 SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVEC 293
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLAL 247
N PD Q + L+ G L AL
Sbjct: 294 DNF-PDIQTYNILVAGFSRANRLDDAL 319
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-------L 102
++ Y+ +I+ L DE + + + D P+ I F +I + +A L
Sbjct: 54 TIVSYNTVISGLASIDKMDEAYKFFNSMI-DNGCEPDVIAFTTLIHGFCKAGQPQVGHML 112
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACS 158
L AL+ F + V + ++++ G +D F+I+E+ ++ PDA +
Sbjct: 113 LNQALKRF--------RPDVFLYTSVIHGYCKAGDLDTG---FKILEEMLAAGCIPDAAA 161
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +L+ R+++A+++F+ M K VTF TLI L ++DEA +L +M+
Sbjct: 162 YFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMI 221
Query: 219 -RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R Y +P +V SLI LC G++ A + +V K+
Sbjct: 222 ERGY--EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKV 260
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDAC 157
+A ++ A +++ + + V + ++N+L++ G++D + L Q++E PD
Sbjct: 241 KAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQ 300
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + RL+DA ++F + +P T+ T+I GL R++EA ++
Sbjct: 301 TYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA 360
Query: 218 MRVYNVKPDAQVFASLIKGL 237
+ V + + ++IKGL
Sbjct: 361 LDVIS-------YTTVIKGL 373
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHXFCKEGEIRL---AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L +M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYRQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 89/169 (52%), Gaps = 2/169 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L + + V P+ + +I+ + ++ A ++FDEM + +F TL++
Sbjct: 193 LKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHC 252
Query: 134 TCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++D +++ Q++ + + PD +YN L++G L+ A + DEM + L+P +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 312
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
T+ TLI G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 313 TYTTLIDGXCKEGDLETAFEYRKRMIKE-NIRXDDVAYTALISGLCQEG 360
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A + P Y Y ++I L + D+ ++ ++ B +VP + F +I + +
Sbjct: 198 QASGVHPDVYT---YSVLINGLCKESKMDDANELFDEML-BNGLVPNXVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V +KP+ + +I C G++ +EM R
Sbjct: 374 SV-GLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQR 409
>gi|13324802|gb|AAK18850.1|AC082645_20 unknown protein [Oryza sativa Japonica Group]
Length = 825
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMH 164
VF EMS + ++ +N ++A ++D LF M+ + PD C++N L+
Sbjct: 211 HVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIR 270
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
VV R+ DA V+DEM ++P + T+ ++ G C R+D+AL+L ++M Y VK
Sbjct: 271 ALVVGARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVK 330
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
DA V+ SL+ GL +L A GF E MV + I+ A
Sbjct: 331 GDAVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSA 368
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++T + +V ILH+ ++ P +I N +I G+ E A + E
Sbjct: 613 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISE 670
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+S V + +NTL+N + GK+D L QI+ + + PD ++N L++ + R
Sbjct: 671 LSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGR 730
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L++A K +M+ + P T L+ + +EL D KL E + +K + Q
Sbjct: 731 LKEADKYLRKMIAEGIAPNYATETILLIRMIVELIDDCIEKLGEKKAVKWPLKQEEQT 788
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 591 LSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDIATYNL 650
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + E A + E+ K+ + +V + TLI L +VDEA L E ++
Sbjct: 651 IIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIG-R 709
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + +M+ I
Sbjct: 710 GIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGI 746
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 16/232 (6%)
Query: 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
++ DP ++ ++FK+ + ++ + +I F ++++L ++
Sbjct: 36 IEHDPPISDKIFKS---------GPKMGSYKLGDSTFYSLIDNYANLGDFKSLEKVLDRM 86
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCG 136
+ + RVV E+ F + YG+A L E A+ +FD M+ F +RTVKSFN++LN ++ G
Sbjct: 87 RCEKRVVVEKC-FVVIFKAYGKAHLPEKAVGLFDRMAYEFECKRTVKSFNSVLNVIIQEG 145
Query: 137 KIDRMTDLFQ--IMEKYV--SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
R + + I K V SP+ ++N+++ ++DA ++F +M + QP +
Sbjct: 146 LFYRALEFYNHVIGAKGVNISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVY 205
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
T+ TL+ GLC R+DEA+ L D M++ P F LI GLC G+L+
Sbjct: 206 TYCTLMDGLCKADRIDEAVSLL-DEMQIDGCFPSPVTFNVLINGLCKKGDLA 256
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 110/215 (51%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+L ++L+I + + + D+ Q+ + ++ P+ +C ++ +A ++ A+ +
Sbjct: 168 NVLTFNLVIKTMCKVGLVDDAVQMFRDMPV-SKCQPDVYTYCTLMDGLCKADRIDEAVSL 226
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM + +FN L+N + G + R+ L M K +P+ +YN L+HG +
Sbjct: 227 LDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLCL 286
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMRVYNVKPDA 227
+LE A + D M+ + P +VT+GT+I GL + R +D A L R Y+V +
Sbjct: 287 KGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERGYHV--NE 344
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V+++LI GL G+ A+ +EM + E++
Sbjct: 345 YVYSALISGLFKEGKSQEAMQLFKEMTVKECELNT 379
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 106/223 (47%), Gaps = 11/223 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE----EIIFCNVISFYGRA 100
+ + N Y +I+ L + E Q+ ++ V E I++ VI R
Sbjct: 338 RGYHVNEYVYSALISGLFKEGKSQEAMQLFKEM-----TVKECELNTIVYSAVIDGLCRD 392
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+ AL+V EM++ + ++++L+ G + ++++ M K+ + + Y
Sbjct: 393 GKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCY 452
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM- 218
++L+HG ++++A V+ +ML + +P +V +G++I GL V++AL+L +M+
Sbjct: 453 SVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNEMLC 512
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +PD + L+ LC +S A+ M+ + D
Sbjct: 513 QEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPD 555
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
E+ + +I + ++ A+ V+ +M + V ++ +++N + G ++ L+
Sbjct: 449 EVCYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYN 508
Query: 147 IM---EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
M E PD +YNIL++ + A + + ML R P LVT
Sbjct: 509 EMLCQEPDSQPDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVT 558
>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 12/255 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P L+SL+ Q DP +LQ+F + +P PF +N Y I KL + + F
Sbjct: 48 NPKLLSSLISRQHDPHFSLQIFLHAQ-----NHHKP--PFSHNPQTYQAIFLKLSKFRCF 100
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
E++ +L L+ E VI YG A AL+ F + SF ++ +V+S N
Sbjct: 101 SEIESLLAGLRSSPPHCCGEEPIVTVIRGYGLAGKPVRALKTFLRIESFGIRPSVRSINA 160
Query: 128 LLNAMLTCGKIDRMTDLFQ-IMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN+++ + +F+ E++ V P+ S NIL+ +E A KV DEM
Sbjct: 161 LLNSLVQNKRYRLAFLVFKNCGERFRVLPNVVSCNILLKALCKGNEVEVAVKVLDEMPGM 220
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
L P +V++ T++ G +D A+K+ +E + R ++ PD + L+ G C +G+L
Sbjct: 221 GLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDRGWS--PDVTSYTVLVDGFCRLGKLV 278
Query: 245 LALGFKEEMVRNKIE 259
A+ + M N +E
Sbjct: 279 DAIRVMDIMEDNGVE 293
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 3/139 (2%)
Query: 82 RVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
RV+P ++ CN++ + +E A++V DEM + V S+ T+L + G +D
Sbjct: 186 RVLPN-VVSCNILLKALCKGNEVEVAVKVLDEMPGMGLVPNVVSYTTVLGGFVWRGDMDG 244
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+F +++++ SPD SY +L+ G +L DA +V D M ++P VT+G +I
Sbjct: 245 AMKVFREVLDRGWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQ 304
Query: 200 GLCLELRVDEALKLKEDMM 218
C E + EA+ L EDM+
Sbjct: 305 AYCKEKKSGEAVNLIEDMI 323
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 11/210 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++I + K E ++ + VV E+ C V+ +E A ++
Sbjct: 295 NEVTYGVMIQAYCKEKKSGEAVNLIEDMIAKDLVVGSELC-CKVVDLLCEEGNVEKACEM 353
Query: 110 FDEMSSFNVQ-RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ +S N +TL++ + GK+ ++F K +YN L+ G
Sbjct: 354 WRMVSRKNCGLNGAVVVSTLIHWLCKKGKVLEARNVFDEFGKGSVASLLTYNTLIAGLCE 413
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A +++D+M+++ + P T+ LI G C E +++ E+M+ P+
Sbjct: 414 GGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLE-NRCLPNKS 472
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ LI G+ +G G K+E+ NK+
Sbjct: 473 TYTILIDGILLLG------GMKQEI--NKV 494
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + PE +F ++ + R L A +VFDEM +VQ TV +FNTL++ M +D
Sbjct: 179 DAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLD 237
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ L++ M V PD +Y L+ G + R+E+A K+F+EM + P V F TLI
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C E V+ + L +D MRV V PD + +L+ GLC L A EEM +
Sbjct: 298 DAHCKEGNVNAGMDLYQD-MRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGL 356
Query: 259 EMD 261
+ D
Sbjct: 357 KPD 359
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++ +I+ + RA+ D V + ++ D V P+ + +I + R +E+A+++
Sbjct: 219 TVVTFNTLISGMCRARDLDAVDGLYKEMS-DVGVKPDVYTYGALIKGFCRTGRMENAVKM 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM V F TL++A G ++ DL+Q M + V PD +YN L++G
Sbjct: 278 FNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCR 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+R L+ A + +EM L+P VT+ TLI G C + ++D A+ +K+ M V D
Sbjct: 338 ARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAE-KEVSLDEV 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI GL G A EM+ +E D
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMMEAALEPD 429
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 17/218 (7%)
Query: 49 YNLLHYDLIITKLGR----AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+N+L D + +LG K+FDE+++ V P + F +IS RAR L+
Sbjct: 189 FNVLMRDFV--RLGELVSARKVFDEMRR---------SVQPTVVTFNTLISGMCRARDLD 237
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
++ EMS V+ V ++ L+ G+++ +F M + V+P+A + L+
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ ++ +M R + P LV + L+ GLC + A + E+M +
Sbjct: 298 DAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNA-GL 356
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KPD + +LI G C G+L +A+ K++M ++ +D
Sbjct: 357 KPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLD 394
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ ++P+ +N+LM V L A KVFDEM +R +QPT+VTF TLI G+C
Sbjct: 175 LQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLISGMCRA 233
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+D L ++M V VKPD + +LIKG C G + A+ EM + +A
Sbjct: 234 RDLDAVDGLYKEMSDV-GVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNA 290
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P+ + + +++ RAR L+ A + +EM + ++ ++ TL++ GK+D
Sbjct: 321 VMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAM 380
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D+ Q M EK VS D +Y L+ G + R DA +V EM++ L+P T+ +I
Sbjct: 381 DIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF 440
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
C + V KL ++M KP + ++ GLC +G++
Sbjct: 441 CRKGDVKTGFKLLKEMQN-KGKKPGVVTYNVIMNGLCKLGQM 481
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 97/196 (49%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L RA+ + I+ ++K+ + P+++ + +I + L+ A+ +
Sbjct: 324 DLVAYNALVNGLCRARNLKAAESIVEEMKN-AGLKPDKVTYTTLIDGCCKDGKLDMAMDI 382
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M+ V ++ L++ + G+ +D L ++ME + PD +Y +++
Sbjct: 383 KQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCR 442
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ +K+ EM + +P +VT+ ++ GLC ++ A L M+ + V PD
Sbjct: 443 KGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNI-GVSPDDI 501
Query: 229 VFASLIKGLCAVGELS 244
+ L+ G C G+++
Sbjct: 502 TYNILLDGQCKHGKVA 517
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 115/241 (47%), Gaps = 13/241 (5%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L L +L +AL F+ A+ K F+Y+ +Y+ +I LG+ K F +
Sbjct: 115 LEVLKKLSNSGVIALSFFR---------WAEKQKGFKYSTENYNALIEALGKIKQFKMIW 165
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+++ ++ + E F + Y RAR ++ A++ F++M F +Q + FN LL+A
Sbjct: 166 NLVNDMRSKGLLTQE--TFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDA 223
Query: 132 MLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ ++R ++F M ++ PD SY IL+ G + L +V+ EM +P
Sbjct: 224 LCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPD 283
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+G LI C R D A++L M P ++ +LI GL + L+ AL F
Sbjct: 284 AVTYGILINAHCKARRYDAAVELFHK-MEANKCMPTPHIYCTLINGLGSERRLTEALQFF 342
Query: 251 E 251
E
Sbjct: 343 E 343
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 112/213 (52%), Gaps = 10/213 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + + Y ++I +A+ +D ++ H+++ + + +P I+C +I+ G R L A
Sbjct: 280 FEPDAVTYGILINAHCKARRYDAAVELFHKMEAN-KCMPTPHIYCTLINGLGSERRLTEA 338
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNIL 162
LQ F+ + ++N ++ + C + RM D ++I+++ V P +Y+I+
Sbjct: 339 LQFFERSKASGFTPEAPTYNAVVGSY--CQSM-RMDDAYRIVDEMRKCGVGPQTRTYDII 395
Query: 163 MHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+H + +RR ++A++VF M +P++ T+ ++ C E RVD AL++ D M+
Sbjct: 396 LHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRV-WDEMKAK 454
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +F++LI LC +L A + EM+
Sbjct: 455 GVLPGMHMFSTLINSLCYENKLDEACKYFHEML 487
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 105/213 (49%), Gaps = 8/213 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ FR ++ Y +++ G+ + + ++ ++K D P+ + + +I+ + +AR +
Sbjct: 243 RKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMK-DEGFEPDAVTYGILINAHCKARRYD 301
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYN 160
A+++F +M + T + TL+N + G R+T+ Q E+ +P+A +YN
Sbjct: 302 AAVELFHKMEANKCMPTPHIYCTLINGL---GSERRLTEALQFFERSKASGFTPEAPTYN 358
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ S R++DA+++ DEM K + P T+ +++ L R EA ++ + M
Sbjct: 359 AVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSE 418
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P + +++ C + +AL +EM
Sbjct: 419 PGCEPSVSTYEIVVRMFCNEERVDMALRVWDEM 451
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 140/296 (47%), Gaps = 57/296 (19%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L++ + DP+ AL++F N Q + F +N Y I+ KL ++K F + +
Sbjct: 135 NLIKRETDPQRALEIF-------NRVAEQ--RGFSHNNATYATILHKLAKSKKFQAIDAV 185
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAM 132
LHQ+ ++T E IF N++ + + L E +++FD + ++ ++K+ +T LN +
Sbjct: 186 LHQMTYETCKF-HEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREKPSLKAISTCLNLL 244
Query: 133 LTC---------GKIDRMTDLFQIMEK-YVS-PDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ G ID ++ + M+K +VS P+ +Y+ L++G S RL++A ++F+E
Sbjct: 245 VESNQSSITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEE 304
Query: 182 ML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------------------------- 215
M+ K ++ P +T+ LI G C +VD ALK+ E
Sbjct: 305 MVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEG 364
Query: 216 ---------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D M+ +KPD + +LI C G + A+ ++M NK D
Sbjct: 365 RLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADT 420
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 3/188 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFN 126
D +++ ++K P I + +I+ + L+ A+++F+EM S + + ++N
Sbjct: 260 DSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYN 319
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L+N K+DR + + M+K +P+ +Y+ LM+G RLE+A +VFDEM
Sbjct: 320 ALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSL 379
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+P V + TLI C RVDEA++L +DM + D F ++ GLC G
Sbjct: 380 GLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXE-NKCRADTVTFNVILGGLCREGRFEE 438
Query: 246 ALGFKEEM 253
A G E +
Sbjct: 439 AXGMLERL 446
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y+ +I D +I+ +K + P + +++ + + LE A +VFD
Sbjct: 316 LTYNALINGFCHGXKVDRALKIMEFMKKNG-CNPNVFNYSALMNGFCKEGRLEEAKEVFD 374
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
EM S ++ + TL+N G++D +L + M E D ++N+++ G
Sbjct: 375 EMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREG 434
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R E+A + + + + ++ ++ LC E + +A +L +M V P
Sbjct: 435 RFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLV-GLMLGRGVLPHFATS 493
Query: 231 ASLIKGLCAVGELS---------LALGFKEE 252
L+ LC G++ L LGFK E
Sbjct: 494 NELLVHLCEAGKVGDAVMALLGLLELGFKPE 524
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT KS++TL +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + FD+M R + P ++T+ T+I G ++DEA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT KS++TL N ML+ GK++
Sbjct: 111 VERTTKSYDTLFKVILRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F M+ + +SPD +YN +++G +++++A K F EM R ++PT+VT+ TLI G
Sbjct: 171 RFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +KP+A +++L+ GLC ++S A +EMV I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYI 286
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+E A + FD+M S + V ++NT++N K+D F M+ + + P +Y
Sbjct: 166 VETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTT 225
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G V +++DA ++ +EM ++P +T+ TL+ GLC ++ EA + ++M+ Y
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKY 285
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F LI G C G L A + M+R + +A
Sbjct: 286 IAPTDNSIFMRLISGQCKTGNLDAAADVLKAMIRLSVPTEA 326
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + ++ A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ Y + P+A +Y+ L+ G + ++ +A V EM+ + + PT + F LI G
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C + A+ ++++ I
Sbjct: 301 QCKTGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKADQHDKAVKLLDKLIEKDI 357
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANVLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRD 410
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM+ + L+P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKE-NIRLDDVAYTALISGLCQEG 360
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANVLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 5/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+AQ LKP + + Y +I L +A E +++ Q++ + R VP + +I YG
Sbjct: 276 KAQGLKP---DDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-RSVPCAYAYNTMIMGYGS 331
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A E A ++ + + +V SFN++L + K+D LF++M+K P++ +Y
Sbjct: 332 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTY 391
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI++ + R+E+A+++ DEM L P L+T ++ LC +++EA K+ E +
Sbjct: 392 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 451
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + SLI GL G++ A E+M+
Sbjct: 452 -RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 485
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+A +E +F+++ S+ V+S++ L++ + G+ +++F M ++ + DA
Sbjct: 540 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 599
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN ++ G S ++ A+++ +EM ++ +QPT+ T+G ++ GL R+DEA L E+
Sbjct: 600 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 658
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + +++SLI G VG + A EEM++ +
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 699
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + Y+ ++ ++ + +IL ++K V P + ++ + L+ A
Sbjct: 594 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIVDGLAKIDRLDEA 652
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG 165
+F+E S ++ V +++L++ G+ID + + +M+K ++P+ ++N L+
Sbjct: 653 YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 712
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
V + + +A F M + + P T+ LI GLC + ++A +DM + + P
Sbjct: 713 LVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQK-QGLVP 771
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + ++I GL VG ++ A E N DA
Sbjct: 772 NVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 808
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++II L +E +IL +++H + + P + ++ +AR LE A ++F+
Sbjct: 391 YNIIIDMLCLGGRVEEAYRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKIFESA 449
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ +L++ + G++D LF+ +++ + + Y L+ + R
Sbjct: 450 SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRK 509
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
ED K+F E+++R +P L T + + V++ + ED +R Y PD + ++
Sbjct: 510 EDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVRSYSI 568
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI GL G+ M + +DA
Sbjct: 569 LIHGLTKAGQARETSNIFHAMKQQGFALDA 598
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 108/248 (43%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NLL ++++ +L +A+ +E +I P+ + +C++I G+ ++ A ++
Sbjct: 422 NLLTVNIMVDRLCKARKLEEAYKIFESASQRG-CNPDCVTYCSLIDGLGKKGQVDEAYRL 480
Query: 110 FDEM--SSFN-----------------------------VQRTVKSFNTLLNAMLTC--- 135
F++M + N ++R K TLLN + C
Sbjct: 481 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 540
Query: 136 -GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G++++ +F+ + Y PD SY+IL+HG + + + +F M ++
Sbjct: 541 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 600
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++ G C +V +A ++ E+M + V+P + +++ GL + L A EE
Sbjct: 601 YNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 659
Query: 254 VRNKIEMD 261
IE++
Sbjct: 660 KSKGIELN 667
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 41/272 (15%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLF--------KNPNPNPNNTEAQPLKPFRYNLLHY 54
A PT+ + S+LR ++P LA F P+P P + L PF LH+
Sbjct: 70 SASPTADV-VISVLRSIRNPSLAAPFFLLASSSSASAPHPLPADAYHAVL-PF----LHH 123
Query: 55 DL------------------------IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90
DL + L RA+ D+ + ++ + P +
Sbjct: 124 DLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRR-LKFRPAFSAY 182
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIME 149
+I AR E AL++ +M + V F TL+ A+ G++ D + + ++
Sbjct: 183 TVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKG 242
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ PD YN+ + + ++ AWK F E+ + L+P V++ ++I+ LC R+ E
Sbjct: 243 SCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGE 302
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
A +L M +V P A + ++I G + G
Sbjct: 303 AEELFAQMEAERSV-PCAYAYNTMIMGYGSAG 333
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++ ++ L +A+ +E +K + + P + +I+ R + A
Sbjct: 702 NVYTWNSLLDALVKAEEINEALVCFQSMK-EMKCPPNTYTYSILINGLCRVQKYNKAFVF 760
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
+ +M + V ++ T+++ + K+ +TD + + E++ + PDA S+N L+ G
Sbjct: 761 WQDMQKQGLVPNVVTYTTMISGL---AKVGNITDAYSLFERFKANGGIPDAASFNALIEG 817
Query: 166 CVVSRRLEDAWKVFDE 181
+ R +A++VF+E
Sbjct: 818 MSNANRAMEAYQVFEE 833
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANVLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEM+ L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMI-DNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 10/213 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y I +L AK F + ++L K + E+ + ++ YG + + EHA ++FDEM
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVI-RIMLLYGYSGMAEHAHKLFDEM 148
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRR 171
N +RTVKSFN LL+A + K+D F ++ EK ++PD +YN ++
Sbjct: 149 PELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGS 208
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLI---YGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++D +F+E+ K +P L++F TL+ Y L + D D+M+ N+ P+ +
Sbjct: 209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIW----DLMKSKNLSPNIR 264
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ S ++GL + + AL + M I D
Sbjct: 265 SYNSRVRGLTRNKKFTDALNLIDVMKTEGISPD 297
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I L R D++ I +L+ + P+ I F ++ + R L ++
Sbjct: 192 DLVTYNTMIKALCRKGSMDDILSIFEELEKNG-FEPDLISFNTLLEEFYRRELFVEGDRI 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+D M S N+ ++S+N+ + + K +L +M+ + +SPD +YN L+ V
Sbjct: 251 WDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRV 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
LE+ K ++EM ++ L P VT+ LI LC + +D A+++ E+ ++
Sbjct: 311 DNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIK 361
>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 738
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 4/200 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
I+ LGR + + IL +R E F ++I YGRA +++ ++++F +M
Sbjct: 125 IVQILGRYSKLNHARCILFDDTRGGASRATVTEDAFVSLIDSYGRAGIVQESVKLFKKMK 184
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLE 173
V RTVKS++ L +L G+ + M + V P +YNIL+ G +S RL+
Sbjct: 185 ELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLNESVEPTRHTYNILLWGMFLSLRLD 244
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + +++M R + P +VT+ TLI G +V+EA KL + M+ ++ P+ F ++
Sbjct: 245 TAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVE-MKGRDIVPNVISFTTM 303
Query: 234 IKGLCAVGELSLALGFKEEM 253
+KG A G++ AL EEM
Sbjct: 304 LKGYVAAGQIDDALKVFEEM 323
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A++ +++M S + V ++NTL+N K++ LF M+ + + P+ S+
Sbjct: 243 LDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRDIVPNVISFTT 302
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G V + +++DA KVF+EM ++P VTF TL+ GLC ++ EA + +M+ Y
Sbjct: 303 MLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEKMAEARDVLGEMVERY 362
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D VF L+ C G+L A + M+R I +A
Sbjct: 363 IAPKDNAVFMKLMSCQCKAGDLDAAGDVLKAMIRLSIPTEA 403
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 42 QPLKPFR--YNLLHYDLIIT-KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
+ ++P R YN+L + + ++ +L A F E + ++P+ + + +I+ Y
Sbjct: 221 ESVEPTRHTYNILLWGMFLSLRLDTAVRFYEDMK-------SRGILPDVVTYNTLINGYF 273
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDAC 157
R + +E A ++F EM ++ V SF T+L + G+ID +F+ M+ V P+A
Sbjct: 274 RFKKVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAV 333
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKED 216
+++ L+ G + ++ +A V EM++R + P F L+ C +D A + +
Sbjct: 334 TFSTLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAVFMKLMSCQCKAGDLDAAGDVLKA 393
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
M+R+ ++ +A + LI+ C A ++M+ +I
Sbjct: 394 MIRL-SIPTEAGHYGVLIENFCKANLYDKAEKLLDKMIEKEI 434
>gi|224111544|ref|XP_002315895.1| predicted protein [Populus trichocarpa]
gi|222864935|gb|EEF02066.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 15/240 (6%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L +L LAL F+ A+ K F+Y+ Y +I LG+ K F+ + +
Sbjct: 11 ALKKLSNAGALALSFFR---------WAEKQKGFQYSTESYHALIESLGKIKQFNVIWNL 61
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ +K + E F + Y RAR ++ A+ F +M F ++ N LL+ +
Sbjct: 62 VTDMKQKGLLNKE--TFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLC 119
Query: 134 TCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+++R +F M K +V+ D SY IL+ G + L +V++EM +P +
Sbjct: 120 KSRQVERAQLVFDKMNKRGFVA-DIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDV 178
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
VT+G LI C R D+A++L + M N KP ++ +LI GL A LS AL F E
Sbjct: 179 VTYGILINAHCKSRRYDDAIELFHE-MEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFE 237
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y ++I +++ +D+ ++ H+++ P I+C +I+ G + L A
Sbjct: 174 FEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKN-CKPSPHIYCTLINGLGAEKRLSEA 232
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
L+ F+ + ++N ++ A ++D + M K V P A +Y+I++H
Sbjct: 233 LEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHH 292
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + + + A+ VF +M QP++ T+ ++ C E RVD A+K+ D M+ + P
Sbjct: 293 LIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKV-WDQMKAKGILP 351
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
+F++LI LC +L A + +EM+
Sbjct: 352 VMHMFSTLINSLCHESKLDEACMYFQEML 380
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG K E + +L + VPE + V+ Y + ++ + DEM
Sbjct: 216 YCTLINGLGAEKRLSEALEFF-ELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEM 274
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
V + ++++ +L+ ++ GK +FQ M + P +Y I++ R+
Sbjct: 275 RKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRV 334
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A KV+D+M + + P + F TLI LC E ++DEA ++M+ V ++P AQ+F++
Sbjct: 335 DMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDV-GIRPPAQLFSN 393
Query: 233 LIKGLCAVGELSLALGFKEEM 253
L + L G+ + F+ ++
Sbjct: 394 LKQNLLDEGKKDTVVVFERKL 414
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+G+ + L ++V++EM + V ++ L+NA + D +LF ME K P
Sbjct: 153 WGQEKNLSRLMEVYNEMKDEGFEPDVVTYGILINAHCKSRRYDDAIELFHEMEAKNCKPS 212
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
Y L++G +RL +A + F+ P T+ ++ C R+D+ +
Sbjct: 213 PHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTI- 271
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
D MR V P A+ + ++ L G+ +A ++M
Sbjct: 272 DEMRKGGVGPSARTYDIILHHLIRAGKTKIAYSVFQKM 309
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 125/255 (49%), Gaps = 13/255 (5%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LA Q+F + + F + Y II KL RA+ FD
Sbjct: 15 PKRLISMITHQENLDLAFQIF--------DYAGKYHPGFSHTYDTYHSIIDKLSRARAFD 66
Query: 69 EVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFN 126
V+ +L QL ++ + + + +F +VI YG A AL+ F + F++Q +VK N
Sbjct: 67 GVESLLSQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLN 126
Query: 127 TLLNAMLTCGKIDRM-TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
TLLN + + + + L +KY V P+ S+NIL+ +E+A KVFDEM
Sbjct: 127 TLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPT 186
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ P LVT+ T++ G + A K+ ++ PDA + L+ G C G LS
Sbjct: 187 MGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISD-KGWLPDATTYTVLMVGYCKQGRLS 245
Query: 245 LALGFKEEMVRNKIE 259
A+ + M N +E
Sbjct: 246 DAIKVMDNMEYNGVE 260
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K + V L K V+P F +I + +E+AL+VFDEM + + + +
Sbjct: 136 KRYHLVGSTLKNCKDKYGVLPNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVT 195
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ T+L ++ G + +F +I +K PDA +Y +LM G RL DA KV D M
Sbjct: 196 YTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNME 255
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++P VT+G +I C E + EA L +DM+ P + + +I LC G++
Sbjct: 256 YNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLD-KKFLPSSTLCCKVIDVLCEDGKV 314
Query: 244 SLALGFKEEMV 254
A + M+
Sbjct: 315 ENACHLWKRML 325
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 5/205 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
+N E ++P N + Y ++I + K E + ++ + D + +P + C VI
Sbjct: 252 DNMEYNGVEP---NEVTYGVMIDAYCKEKKSGEARNLIDDML-DKKFLPSSTLCCKVIDV 307
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+E+A ++ M N +TL++ + GK+ LF E+ P
Sbjct: 308 LCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQGTIPSL 367
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G L +A +++D+M+++R +P T+ LI G V E +++ E+
Sbjct: 368 MTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEE 427
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVG 241
M+ P+ + LI+GL G
Sbjct: 428 MLD-NGCLPNKSTYTLLIEGLQESG 451
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ + + +++ ++++ V P E+ + +I Y + + A + D+M
Sbjct: 231 YTVLMVGYCKQGRLSDAIKVMDNMEYNG-VEPNEVTYGVMIDAYCKEKKSGEARNLIDDM 289
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ +++ + GK++ L++ ++EK PD + L+H ++
Sbjct: 290 LDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKV 349
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K+FDE + + P+L+T+ TLI G+C ++EA +L +DM+ +P+A +
Sbjct: 350 WEARKLFDEFEQGTI-PSLMTYNTLIAGMCERGELNEAGRLWDDMVE-KRCRPNAFTYNM 407
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
LIKG G + + EEM+ N
Sbjct: 408 LIKGFMKAGVVKEGVRILEEMLDN 431
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y I+ +++ ++ D +P+ + ++ Y + L A++V
Sbjct: 192 NLVTYTTILGGFVSRGDLVNAEKVFSEIS-DKGWLPDATTYTVLMVGYCKQGRLSDAIKV 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
D M V+ ++ +++A K +L +++K P + ++
Sbjct: 251 MDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCE 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++E+A ++ ML++ P TLI+ LC E +V EA KL ++ + P
Sbjct: 311 DGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEGKVWEARKLFDEFEQ--GTIPSLM 368
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI G+C GEL+ A ++MV + +A
Sbjct: 369 TYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNA 402
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 115/206 (55%), Gaps = 5/206 (2%)
Query: 61 LGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
LGR + + + L ++ +R V E F +++ + RA L + +++VF M S V
Sbjct: 121 LGRNRHLNTARNFLFSIEKRSRGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGV 180
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAW 176
+V +FN+LL +L G+ + ++ +++ Y V+PD ++NIL+ G ++ ++D +
Sbjct: 181 SPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGF 240
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDAQVFASLIK 235
++F+++ + +P +VT+ TL+ GLC +V A + + M + ++ P+ + +LI+
Sbjct: 241 RIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIR 300
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
G CA E+ AL EEMV ++ +
Sbjct: 301 GYCAKREIEKALAVFEEMVNQGLKAN 326
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M +++ ++ V P+ F +I + +++ ++F+++S F
Sbjct: 193 ILLKRGRTNM---AKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRF 249
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
+ V ++NTL++ + GK+ ++ + M K ++P+ +Y L+ G R +E
Sbjct: 250 GCEPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIE 309
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A VF+EM+ + L+ +T+ TLI GLC + ++ + E PD F +L
Sbjct: 310 KALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTL 369
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ C G L AL E M KI+ D+
Sbjct: 370 MHCHCHAGNLDDALKVFERMSELKIQPDS 398
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 10/217 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ L RA ++ + K + P + + +I Y R +E AL
Sbjct: 254 DVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALA 313
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGC 166
VF+EM + ++ ++NTL+ + K +++ D+ + + SPD C++N LMH
Sbjct: 314 VFEEMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCH 373
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRV 220
+ L+DA KVF+ M + ++QP T+ L+ LC ++A L ++ ++
Sbjct: 374 CHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSG 433
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRN 256
KP + + K LC G+ A F++ M R
Sbjct: 434 DGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG 470
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 103/245 (42%), Gaps = 49/245 (20%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N + Y+ +I L A+ F++++ IL D P+ F ++ + A L+
Sbjct: 321 QGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLD 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV--SPDAC---- 157
AL+VF+ MS +Q +++ L+ ++ G ++ DL +++E+ + S D C
Sbjct: 381 DALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLV 440
Query: 158 -----------------------------------SYNILMHGCVVSRRLEDAWKVFDEM 182
SY L+ G E +++ M
Sbjct: 441 AAYNPIFKYLCETGKTKKAEKAFRQLMRRGTQDPPSYKTLIMGHCKEGTFESGYELLVLM 500
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
L++ P T+ +LI GL L +D+ AL+ E M+R + +P++ F S++ L
Sbjct: 501 LRKDFLPDFETYESLINGL---LHMDKPLLALQSLEKMLRSSH-RPNSSTFHSILAKLLE 556
Query: 240 VGELS 244
G S
Sbjct: 557 QGRTS 561
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-- 150
V+ G R ALQ F+ T +S+ ++L + ++ + +EK
Sbjct: 82 VLQTLGFLRDTSKALQFFNWAQEMGYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRS 141
Query: 151 --YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
V +A +N LM + +++ KVF M + P++VTF +L+ L R +
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
A K+ ++M+ Y V PD F LI+G C G
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNG 234
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y + L+ ++ + M + VQ V +++ L+N + K+D +L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANEL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++ + P+ ++ L+ G +RR++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G+L A +++ M++ I +D
Sbjct: 289 KGDLKQAQDLI-DEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V D +Y++L++G + +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNRRVDVAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I L +A D+ ++ ++ D +VP + F +I + + R ++ A+++
Sbjct: 205 DVYTYSVLINGLCKASKMDDANELFDEM-LDNGLVPNGVTFTTLIDGHCKNRRVDVAMEI 263
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+ +M S ++ + ++NTL+ + G + + DL M K + PD +Y L+ G
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A++ M+K ++ V + LI GLC E R +A K+ +M+ V +KP+
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV-GLKPEIG 382
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +I C G++ L +EM R+
Sbjct: 383 TYTMIINEFCEKGDVWTGLKLLKEMQRD 410
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)
Query: 26 LQLFKNPNPNPNNTE----AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
+++ +NP P + + A + F+ +I + FD V+++L +++ +
Sbjct: 48 MEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLEN 107
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDR 140
RV+ E F V YG+A L + A+ +F M F +R+VKSFN++LN ++ G R
Sbjct: 108 RVIIERS-FIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHR 166
Query: 141 MTDLFQI-----MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ + M +SP+ S+N+++ R ++ A +VF M +R+ P T+
Sbjct: 167 GLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYC 226
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
TL+ GLC E R+DEA+ L D M+ P ++ LI GLC G+L+
Sbjct: 227 TLMDGLCKEERIDEAVLLL-DEMQSEGCSPSPVIYNVLIDGLCKKGDLT 274
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 5/206 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N L ++L+I L + + D ++ + + + +P+ +C ++ + ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLRFVDRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM S + +N L++ + G + R+T L M K P+ +YN L+HG +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDA 227
+L+ A + + M+ + P VT+GTLI GL + R +A++L M R Y++ +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL--NQ 362
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+++ LI GL G+ A+ +M
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKM 388
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + F VI + R ++ A++VF M ++ TL++ + +ID
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ + SP YN+L+ G L K+ D M + P VT+ TLI+GL
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
CL+ ++D+A+ L E M+ + P+ + +LI GL
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCI-PNDVTYGTLINGL 337
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N Y ++I+ L + +E + ++ + P +++ ++ R
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA-EKGCKPNIVVYSVLVDGLCREGKPN 414
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A ++ + M + ++++L+ G + +++ M+K S + Y++L+
Sbjct: 415 EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLI 474
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+++A V+ +ML ++P V + ++I GLC +D ALKL +M+
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEP 534
Query: 224 K--PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K PD + L+ GLC ++S A+ M+ + D
Sbjct: 535 KSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPD 574
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 101/263 (38%), Gaps = 62/263 (23%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N++ Y +++ L R +E ++IL+++ + +P + +++ + + L E
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA-SGCLPNAYTYSSLMKGFFKTGLCE 449
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-------------------------- 138
A+QV+ EM R ++ L++ + G++
Sbjct: 450 EAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509
Query: 139 ---------DRMTDLFQIM----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
D L+ M E PD +YNIL+ G + + + A + + ML R
Sbjct: 510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569
Query: 186 RLQPTLVTFGT---------------------LIYGLCLELRVDEALKLKEDMMRVYNVK 224
P ++T T L+ L RV A + E M+ Y +
Sbjct: 570 GCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKY-LA 628
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
P +A +++ +C +++ A+
Sbjct: 629 PKTSTWAMIVREICKPKKINAAI 651
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 6/210 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
L++ K GR M +++ ++ V P+ + +I + + +++ F EM+S
Sbjct: 198 LVLLKRGRTNM---AKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTS 254
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRL 172
F+ V ++NTL++ + GKI +L M K +SPD +Y L+ G + +
Sbjct: 255 FDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEV 314
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A + +EM R L+P +VT+ TLI GLC + D+ ++ E M PDA F +
Sbjct: 315 DEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNT 374
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C G L A E M + ++ D+
Sbjct: 375 LINSHCCAGNLDEAFKVFENMKKLEVSADS 404
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 5/214 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARL 102
K F +N Y +++ LGR K + + L+ + + + V E+ F ++I YG A L
Sbjct: 111 KGFSHNPQTYFIMLEILGREKNLNIARNFLYSIEKRSNGEVKLEDRFFNSLIRSYGEAGL 170
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYN 160
+ ++++F+ M V V +FN++L +L G+ + +++ M K V PD +YN
Sbjct: 171 FKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYN 230
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-R 219
IL+ G + +++ + F EM P +VT+ TL+ GLC ++ A L M +
Sbjct: 231 ILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK 290
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ PD + +LI+G C E+ AL EEM
Sbjct: 291 CKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEM 324
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 13/205 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ LKP N++ Y+ +I L A+ +D++++IL Q+K D +P+ F +I+ + A
Sbjct: 326 GRGLKP---NIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCA 382
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
L+ A +VF+ M V S++ L+ + G + LF ++ EK +
Sbjct: 383 GNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGP 442
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P A SY + + + + A +V +++KR Q L ++ +I G C E +
Sbjct: 443 KPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPL-SYQIVILGHCKEGSYENGYG 501
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGL 237
L M+R + PD ++ LI G
Sbjct: 502 LLVWMLR-RDFLPDIDIYDYLIDGF 525
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 115/216 (53%), Gaps = 3/216 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +L+ ++ ++ L +A ++ +++ ++ + + P+ + + ++S Y +A L AL
Sbjct: 222 RPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREG-LTPDGVSYNTLVSGYCKAGCLHEAL 280
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
VF EM+ V V +F +L++AM G ++R L Q+ E+ + + ++ L+ G
Sbjct: 281 AVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGF 340
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ L+DA EM + R+QP++V + LI G C R+DEA +L + M +KPD
Sbjct: 341 CRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE-MEAKGMKPD 399
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+++++ G C +G+ A +M++ + DA
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDA 435
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 109/210 (51%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I + RA + ++ Q++ + + E F +I + R L+ AL
Sbjct: 294 DVVTFTSLIHAMCRAGNLERAVALVGQMR-ERGLRMNEFTFTALIDGFCRNGFLDDALLA 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
EM +Q +V +N L+N G++D +L ME K + PD +Y+ ++ G
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A+++ +MLK+ + P +T+ +LI GLC E R+ +A +L E M+++ ++PD
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL-GLQPDEF 471
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G C G + AL +EM++ +
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGV 501
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 104/194 (53%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N + +I R D+ + +++ + R+ P + + +I+ Y + ++
Sbjct: 324 RGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMR-ECRIQPSVVCYNVLINGYCKLGRMD 382
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILM 163
A ++ EM + ++ V +++T+L+ G D +L ++++K V PDA +Y+ L+
Sbjct: 383 EARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLI 442
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RRL DA ++F++ML+ LQP T+ TLI G C E V +AL L ++M++ V
Sbjct: 443 RGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIK-KGV 501
Query: 224 KPDAQVFASLIKGL 237
PD ++ LI GL
Sbjct: 502 LPDVVTYSVLIDGL 515
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 104/215 (48%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHAL 107
+LL Y+ ++ L A + +++L + D V P + N++ + R + E
Sbjct: 119 SLLAYNAVLLALSDASL-PSARRLLASMLRDG-VAPNVYTY-NILVRALCARGQREEALG 175
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
V D+M V ++NTL+ A G++D L +M E V P ++N +++G
Sbjct: 176 VVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGL 235
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ R+EDA K+FDEM + L P V++ TL+ G C + EAL + +M + V PD
Sbjct: 236 CKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQ-KGVVPD 294
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLI +C G L A+ +M + M+
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMN 329
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 112/233 (48%), Gaps = 23/233 (9%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYG 98
EA+ +KP +++ Y I++ G K+ D L++ VVP+ I + ++I
Sbjct: 392 EAKGMKP---DVVTYSTILS--GYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLC 446
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
R L A ++F++M +Q ++ TL++ G + + L ++++K V PD
Sbjct: 447 EERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVV 506
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------GLC 202
+Y++L+ G S R ++A ++ ++ P + + L++ G
Sbjct: 507 TYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFS 566
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
++ +++A K+ + M+ + K D V++ LI G C G + AL F ++++R
Sbjct: 567 MKGLMNQADKVYQSMLDRH-WKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLR 618
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 18/259 (6%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
T P L Q+ P LA++LF + + + + PL ++ ++ L +++
Sbjct: 130 TFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPL---------FNSLLDALSKSRH 180
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ ++ L+ R P+ + + + + R + AL V M + T ++N
Sbjct: 181 AGKAASLVRALEQ--RFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYN 238
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFD 180
+L G++ D F M+K S PD SY ++HG V+ +LE A KVFD
Sbjct: 239 IILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFD 298
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM K P++ T+ LI +C + V++A+ + D MRV P+ + LI+GLC
Sbjct: 299 EMAKEGCAPSVATYNALIQVICKKGNVEDAVTV-FDGMRVKGYVPNVVTYTVLIRGLCHA 357
Query: 241 GELSLALGFKEEMVRNKIE 259
G++ L E M E
Sbjct: 358 GKIDRGLKLLERMKNGGCE 376
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ LG A ++ +++ ++ + P + +I + +E A+ V
Sbjct: 273 DVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG-CAPSVATYNALIQVICKKGNVEDAVTV 331
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD M V ++ L+ + GKIDR L + M+ P +YN+L+
Sbjct: 332 FDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391
Query: 169 SRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMM-RVYNV 223
+E +F++M K P T+ +I + + R ++ A ++ E+M+ R Y
Sbjct: 392 EGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGY-- 449
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
P +F ++ GL G L+
Sbjct: 450 LPRRFMFNRVLNGLMLTGNQELS 472
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 5/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+AQ LKP + + Y +I L +A E +++ Q++ + R VP + +I YG
Sbjct: 10 KAQGLKP---DDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-RSVPCAYAYNTMIMGYGS 65
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A E A ++ + + +V SFN++L + K+D LF++M+K P++ +Y
Sbjct: 66 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTY 125
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI++ + R+E+A+++ DEM L P L+T ++ LC +++EA K+ E +
Sbjct: 126 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 185
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + SLI GL G++ A E+M+
Sbjct: 186 -RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 219
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+A +E +F+++ S+ V+S++ L++ + G+ +++F M ++ + DA
Sbjct: 274 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 333
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN ++ G S ++ A+++ +EM ++ +QPT+ T+G ++ GL R+DEA L E+
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 392
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + +++SLI G VG + A EEM++ +
Sbjct: 393 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 433
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 101/223 (45%), Gaps = 3/223 (1%)
Query: 35 NPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94
N A + F + Y+ ++ ++ + +IL ++K V P + ++
Sbjct: 316 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIV 374
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVS 153
+ L+ A +F+E S ++ V +++L++ G+ID + + +M+K ++
Sbjct: 375 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 434
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ ++N L+ V + + +A F M + + P T+ LI GLC + ++A
Sbjct: 435 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 494
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+DM + + P+ + ++I GL VG ++ A E N
Sbjct: 495 WQDMQK-QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 536
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y++II L +E +IL +++H + + P + ++ +AR LE A ++
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKI 179
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F+ S ++ +L++ + G++D LF+ +++ + + Y L+ +
Sbjct: 180 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R ED K+F E+++R +P L T + + V++ + ED +R Y PD +
Sbjct: 240 HGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVR 298
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ LI GL G+ M + +DA
Sbjct: 299 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDA 332
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 108/248 (43%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NLL ++++ +L +A+ +E +I P+ + +C++I G+ ++ A ++
Sbjct: 156 NLLTVNIMVDRLCKARKLEEAYKIFESASQRG-CNPDCVTYCSLIDGLGKKGQVDEAYRL 214
Query: 110 FDEM--SSFN-----------------------------VQRTVKSFNTLLNAMLTC--- 135
F++M + N ++R K TLLN + C
Sbjct: 215 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 274
Query: 136 -GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G++++ +F+ + Y PD SY+IL+HG + + + +F M ++
Sbjct: 275 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 334
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++ G C +V +A ++ E+M + V+P + +++ GL + L A EE
Sbjct: 335 YNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 393
Query: 254 VRNKIEMD 261
IE++
Sbjct: 394 KSKGIELN 401
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 1/177 (0%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ I+ +I+ +AR HAL++ M++ +V ++ TL++ + G +D L
Sbjct: 9 DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68
Query: 146 QIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q M + +P+ +Y L+ G +RR DA + ML+ +P LVT+ +LI+GLC+
Sbjct: 69 QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMA 128
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+D+A + +++M PD + + I GLC G+L L EEM R I D
Sbjct: 129 NRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPD 185
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 114/247 (46%), Gaps = 15/247 (6%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+A L + +K P+ AL+L N + +++ Y +I L ++ D Q
Sbjct: 17 IAGLCKARK-PRHALELLHVMAANG----------YDASVVTYTTLIDGLCKSGDLDAAQ 65
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+L ++ D P + + +I +AR A+Q M + + ++N+L++
Sbjct: 66 ALLQKMA-DAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHG 124
Query: 132 MLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ ++D + Q ++E PD +YN + G + +L+ ++ +EM + + P
Sbjct: 125 LCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISP 184
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+VTF ++I GLC R+D+A ++ + M+ V PD+ ++ ++ L L
Sbjct: 185 DVVTFCSIISGLCKANRIDDAFQVFKGMLERGCV-PDSLTYSIMLDNLSRANRLDTVEEV 243
Query: 250 KEEMVRN 256
E MV++
Sbjct: 244 LEHMVKS 250
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 37/245 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L +A D+ ++L ++ + P+ + FC++IS +A ++ A QV
Sbjct: 150 DVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG-ISPDVVTFCSIISGLCKANRIDDAFQV 208
Query: 110 F-------------------DEMSSFNVQRTVK----------------SFNTLLNAMLT 134
F D +S N TV+ ++ L++A++
Sbjct: 209 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIR 268
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G I+ + + Q ME + ++N + S + A + M++ P L++
Sbjct: 269 AGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLS 328
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +I GLC VD+A KL M+ KPD F +LI G C G LS A +EM
Sbjct: 329 YNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEM 388
Query: 254 VRNKI 258
I
Sbjct: 389 KAKNI 393
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 5/205 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L Y +++ L RA D V+++L H +K + + +I RA +E A +
Sbjct: 222 LTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSA--TYAPLIHALIRAGDIESASWAY 279
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVS 169
++ V + N + A+ GK + L ++E P+ SYN ++ G S
Sbjct: 280 EQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKS 339
Query: 170 RRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++DAWK+ +ML +P ++ F TLI G C R+ +A +L ++M PD
Sbjct: 340 GNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVV 399
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G G L A EEM
Sbjct: 400 TYNTMIDGQSKFGSLKQAKLLLEEM 424
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 7/222 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRA 100
P R ++ Y+ ++ L + +E +++LH + D+ P+ + + VI+ +
Sbjct: 147 PEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNE 206
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSY 159
++ A +F EM V V ++NT+++ + ++DR D+FQ M EK V P+ +Y
Sbjct: 207 GQVDKAYSLFLEMG---VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N ++ G ++ ++ A VF +M+ + ++P+ VT+ T+I GLC VD A + + M+
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VKPD + ++I GLC + A G ++M+ ++ D
Sbjct: 324 -RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPD 364
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II L +A+ D + + Q+ + V P + + +I +A+ ++ A V
Sbjct: 224 DVVTYNTIIDGLCKAQEVDRAEDVFQQMV-EKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M V+ + ++NT+++ + +DR +FQ M ++ V PD +YN ++ G
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ ++ A VF +M+ + ++P +T+ +I GLC VD A + + M+ VKP+
Sbjct: 343 AQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMID-KGVKPNNG 401
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI G + G+ + +EM + +E D
Sbjct: 402 TYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPD 434
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II L +A+ D + + Q+ D V P+ + + +I +A+ ++ A VF +M
Sbjct: 298 YNTIIDGLCKAQAVDRAEGVFQQMI-DRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQM 356
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V+ ++ +++ + +DR +FQ M +K V P+ +YN L+HG + + +
Sbjct: 357 IDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQW 416
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+ + EM L+P + T+G L+ LC + +EA L + M+R +KP ++
Sbjct: 417 EEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIR-KGIKPSVTIYGI 475
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
++ G G LS MV N I
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGIS 502
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 107/211 (50%), Gaps = 6/211 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+++I D+ + ++ V P+ + + +I +A+ ++ A V
Sbjct: 192 DVVSYNIVINGFFNEGQVDKAYSLFLEMG----VSPDVVTYNTIIDGLCKAQEVDRAEDV 247
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M V+ ++NT+++ + ++D +FQ M +K V P +YN ++ G
Sbjct: 248 FQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCK 307
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ ++ A VF +M+ R ++P VT+ T+I GLC +D+A + + M+ VKPD
Sbjct: 308 AQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMID-KGVKPDNL 366
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +I GLC + A G ++M+ ++
Sbjct: 367 TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVK 397
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 112/217 (51%), Gaps = 5/217 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + Y+ II L +A+ D + + ++ D V P + + +I +A+ ++
Sbjct: 254 KGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMV-DKGVKPSNVTYNTIIDGLCKAQAVD 312
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A VF +M V+ ++NT+++ + ID+ +FQ M +K V PD +Y I++
Sbjct: 313 RAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIII 372
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDMMRVYN 222
G ++ ++ A VF +M+ + ++P T+ LI+G + +E + ++KE M ++
Sbjct: 373 DGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKE--MSAHD 430
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++PD + L+ LC G+ + A + M+R I+
Sbjct: 431 LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIK 467
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I + M DEV I ++K + P + + +I + ++ A+ F++M
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQG-LSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V FN+L+ + T K +++ +LF +++ + + PD +N ++ R+
Sbjct: 567 INEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRV 626
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ D M+ L+P ++++ TLI G C R+DEA+KL + M+ +KP+ + +
Sbjct: 627 MEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA-GLKPNIVSYNT 685
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
L+ G C G + A EM+R +
Sbjct: 686 LLHGYCKAGRIDNAYCLFREMLRKGV 711
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 10/219 (4%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q L P N++ Y +I L + D+ +Q+ ++ V P ++F +++
Sbjct: 534 QGLSP---NVVTYGTLIDALCKLGRVDDAVLQFNQMINEG-VTPNNVVFNSLVYGLCTVD 589
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDACS 158
E ++F EM + ++ + FNT+L + G++ R+ D M + PD S
Sbjct: 590 KWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMG--LKPDVIS 647
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + R+++A K+ D M+ L+P +V++ TL++G C R+D A L +M+
Sbjct: 648 YNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREML 707
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
R V P + + +++ GL G S A M++++
Sbjct: 708 R-KGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSR 745
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 38/225 (16%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L Y +II L +A+ D + + Q+ D V P + +I Y E +Q
Sbjct: 366 LTYTIIIDGLCKAQSVDRAEGVFQQMI-DKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK 424
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG----- 165
EMS+ +++ V ++ LL+ + GK + LF M K + P Y I++HG
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484
Query: 166 ----------------------------CVVSRR--LEDAWKVFDEMLKRRLQPTLVTFG 195
C ++R +++ +F +M ++ L P +VT+G
Sbjct: 485 ALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYG 544
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
TLI LC RVD+A+ L+ + M V P+ VF SL+ GLC V
Sbjct: 545 TLIDALCKLGRVDDAV-LQFNQMINEGVTPNNVVFNSLVYGLCTV 588
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYNILMHGCV 167
+M + V S+NTLL + + + +L +M + SPD SYNI+++G
Sbjct: 145 QMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFF 204
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+++ A+ +F EM + P +VT+ T+I GLC VD A + + M+ VKP+
Sbjct: 205 NEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVE-KGVKPNN 260
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ ++I GLC E+ +A G ++MV ++
Sbjct: 261 VTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVK 292
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I + A ++ A+++ D M S ++ + S+NTLL+ G+ID L
Sbjct: 643 PDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCL 702
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K V+P +YN +++G S R +A +++ M+K R ++ T+ ++ G C
Sbjct: 703 FREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCK 762
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
DEA K+ + + + +++ D F +I GL
Sbjct: 763 NNCFDEAFKIFQSLCSM-DLQLDIITFNIMIDGL 795
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 10/218 (4%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A L+P ++ Y L++ L + +E + + + + P I+ ++ YG+
Sbjct: 427 SAHDLEP---DVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG-IKPSVTIYGIMLHGYGK 482
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L + + M + + + FNT++ A ID + +F ++ ++ +SP+ +
Sbjct: 483 KGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVT 542
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ R++DA F++M+ + P V F +L+YGLC VD+ K++E +
Sbjct: 543 YGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLC---TVDKWEKVEELFL 599
Query: 219 RVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ N ++PD F +++ LC G + A + MV
Sbjct: 600 EMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMV 637
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +++ Y+ +I A DE ++L + + P + + ++ Y +A +
Sbjct: 641 LKP---DVISYNTLIDGHCFASRMDEAVKLLDGMV-SAGLKPNIVSYNTLLHGYCKAGRI 696
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNIL 162
++A +F EM V V+++NT+LN + G+ +L+ M K C+Y+I+
Sbjct: 697 DNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSII 756
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + ++A+K+F + LQ ++TF +I GL R KED M ++
Sbjct: 757 LDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGR-------KEDAMDLFA 809
Query: 223 VKPDAQVFASLI 234
P + S++
Sbjct: 810 AIPANGLVPSVV 821
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 98 GRARL----LEHALQVFDEMSSFNVQRTVKSFNTLLNAM--LTCGK-----IDRMTDLFQ 146
GRAR L AL++FDE+ +V++ N LL+ + C + R + +
Sbjct: 15 GRARSGNLGLHDALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLR 74
Query: 147 IMEKYVSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
V+PD C+Y+I++ GC RLE + F +LK + + L+ GLC
Sbjct: 75 DCSNKVAPDCCTYSIVI-GCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTK 133
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
RV EA+ + M + + +L+KGLC
Sbjct: 134 RVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLC 166
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I TKL A+ D+ ++L+ + + V+P+ + + +++ Y + + A+ +M S
Sbjct: 216 IQTKL-TAQAMDKAMEVLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 273
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
V+ V ++++L+N + G+ +F M K + PD +Y L+ G R+ ++
Sbjct: 274 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIES 333
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
K+FD M++ ++P ++T+ TLI G CL ++DEA KL M+ V VKPD + +LI
Sbjct: 334 EKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV-GVKPDIVTYGTLIN 392
Query: 236 GLCAVGELSLALGFKEEMVRNKIE 259
G C V + AL +EMV + +
Sbjct: 393 GYCRVSRMDDALALFKEMVSSGVS 416
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 100/189 (52%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ I+ + E L +++ D V P + + +++++ + A ++
Sbjct: 243 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKI 301
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FD M+ ++ + ++ TLL G++ LF +M + V PD +YN L+ GC +
Sbjct: 302 FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 361
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A K+ M+ ++P +VT+GTLI G C R+D+AL L ++M+ V P+
Sbjct: 362 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS-SGVSPNII 420
Query: 229 VFASLIKGL 237
+ +++GL
Sbjct: 421 TYNIILQGL 429
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 12/223 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEIIFCNVI--SFYGR------- 99
++ Y+ ++ L E ++LH + D P +++ N + F+
Sbjct: 162 DVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLT 221
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACS 158
A+ ++ A++V + M V ++N++L+ + G+ + + L ++ V P+ +
Sbjct: 222 AQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVT 281
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ LM+ + R +A K+FD M KR L+P + T+ TL+ G C E RV E+ KL + M+
Sbjct: 282 YSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV 341
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ VKPD + +LI G C G++ A MV ++ D
Sbjct: 342 RI-GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 383
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ I + +I A ++ A ++ M S V+ + ++ TL+N ++D
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 404
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++ VSP+ +YNI++ G +RR A +++ + K Q L T+ +++GL
Sbjct: 405 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C DEAL++ +++ + +++ + + F +I L G + A
Sbjct: 465 CKNNLTDEALRMFQNLC-LTDLQLETRTFNIMIGALLKCGRMDEA 508
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 9/198 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I A DE ++L + V P+ + + +I+ Y R ++ AL +
Sbjct: 348 DIITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDALAL 406
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EM S V + ++N +L + + +L+ I + + +YNI++HG
Sbjct: 407 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 466
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK---P 225
+ ++A ++F + LQ TF +I L R+DEA +D+ ++ P
Sbjct: 467 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEA----KDLFAAHSANGLVP 522
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ + + L G L
Sbjct: 523 DVRTYSLMAENLIEQGSL 540
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---CGKIDRMTDLFQIMEKYVSPDACSYN 160
E A VFDE+ ++ N L + + R + + V+P +Y
Sbjct: 37 EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ C + RL+ + ++K+ + +TF L+ GLC + R +A+ + M
Sbjct: 97 ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156
Query: 221 YNVKPDAQVFASLIKGLC 238
PD + +L+KGLC
Sbjct: 157 LGCIPDVFSYNNLLKGLC 174
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYG--RARLLEHA 106
N++ Y++I+ L + +++ + K T++ E+ N+I +G + L + A
Sbjct: 418 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL---ELSTYNII-LHGLCKNNLTDEA 473
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L++F + ++Q ++FN ++ A+L CG++D DLF + PD +Y+++
Sbjct: 474 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 533
Query: 166 CVVSRRLEDAWKVFDEM 182
+ LE+ +F M
Sbjct: 534 LIEQGSLEELDDLFLSM 550
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + +M ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYK-LMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++++M + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 260 AMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKE-NIRLDDVAYTALISGLCQEG 360
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 106/221 (47%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
Length = 844
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 12/254 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ S++ Q++ LALQ+F + N F +N Y +I KL +A+ F
Sbjct: 100 SPKRVVSMISRQQNLDLALQIFDHAGKFHRN--------FAHNYETYLAMIEKLSKARAF 151
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ ++ ++ QL H +++ E +F VI YG A + A++ F + SF +Q +V+SFNT
Sbjct: 152 EPMETLISQL-HKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210
Query: 128 LLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN ++ + D + +F+ K + P+ + NIL+ ++ A +V +EM
Sbjct: 211 LLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAM 270
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P +VT+ T++ G + + A ++ +++ V PD + L+ G C G
Sbjct: 271 GFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWV-PDPTTYTILMDGYCKKGRFMD 329
Query: 246 ALGFKEEMVRNKIE 259
A+ +EM N++E
Sbjct: 330 AVKVMDEMEENRVE 343
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
++ ++ L + K FD V + + +VP + CN+ + + ++ A++V +E
Sbjct: 208 FNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPN-VFTCNILVKALCKKNDIDAAIRVLEE 266
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M + V ++ T+L ++ G + +F +I+++ PD +Y ILM G R
Sbjct: 267 MPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGR 326
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
DA KV DEM + R++P VT+G +I C E + E L L +DM+ + P + +
Sbjct: 327 FMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYI-PSSALCC 385
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I LC G++ +A +++++ D
Sbjct: 386 RVIDMLCEEGKVEVACELWKKLLKKNCTPD 415
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 102/204 (50%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ + F + +++ +++ + RV P ++ + +I Y + + L + D+M
Sbjct: 314 YTILMDGYCKKGRFMDAVKVMDEME-ENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDM 372
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ +++ + GK++ +L++ +++K +PD + L+H ++
Sbjct: 373 LEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKV 432
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K+FDE K + P+ +T+ LI G+C + EA +L ++M+ V P+A +
Sbjct: 433 WEARKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCV-PNAFTYNM 490
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
LIKG C VG + EEM+ N
Sbjct: 491 LIKGFCKVGNAREGIRVMEEMLDN 514
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +II + K EV +L + + + +P + C VI +E A ++
Sbjct: 345 NDVTYGVIIEAYCKEKKSGEVLNLLDDML-EKKYIPSSALCCRVIDMLCEEGKVEVACEL 403
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ ++ N +TL++ + GK+ LF EK P +YN L+ G
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEG 463
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
L +A +++D M+++ P T+ LI G C E +++ E+M+
Sbjct: 464 GELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEML 512
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 28/238 (11%)
Query: 42 QPLKPFRYNLLHYDLII------TKLGRA-KMFDEVQQILHQLKHDTRVV---------- 84
QP KP +LLH+ I T +G A F + H D++
Sbjct: 32 QPFKPRSTSLLHFHSISAVRSASTAVGAAVDPFTDHPSHHHLAAVDSKSTLLKSYTVTPP 91
Query: 85 ----PEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLNAMLTCGKI 138
P+ + V+S R + L+ ALQ+FD F N +++ ++ +
Sbjct: 92 IKPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAF 151
Query: 139 DRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ M L + K S C N+ ++ + R + A + F + LQP++ +F
Sbjct: 152 EPMETLISQLHK--SQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFN 209
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
TL+ L R D + ++ + + + P+ L+K LC ++ A+ EEM
Sbjct: 210 TLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEM 267
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 12/254 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ S++ Q++ LALQ+F + N F +N Y +I KL +A+ F
Sbjct: 100 SPKRVVSMISRQQNLDLALQIFDHAGKFHRN--------FAHNYETYLAMIEKLSKARAF 151
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ ++ ++ QL H +++ E +F VI YG A + A++ F + SF +Q +V+SFNT
Sbjct: 152 EPMETLISQL-HKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNT 210
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN ++ + D + +F+ K + P+ + NIL+ ++ A +V +EM
Sbjct: 211 LLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAM 270
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P +VT+ T++ G + + A ++ +++ V PD + L+ G C G
Sbjct: 271 GFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWV-PDPTTYTILMDGYCKKGRFMD 329
Query: 246 ALGFKEEMVRNKIE 259
A+ +EM N++E
Sbjct: 330 AVKVMDEMEENRVE 343
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 104/210 (49%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
++ ++ L + K FD V + + +VP + CN+ + + ++ A++V +E
Sbjct: 208 FNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPN-VFTCNILVKALCKKNDIDAAIRVLEE 266
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M + V ++ T+L ++ G + +F +I+++ PD +Y ILM G R
Sbjct: 267 MPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGR 326
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
DA KV DEM + R++P VT+G +I C E + E L L +DM+ + P + +
Sbjct: 327 FMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYI-PSSALCC 385
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I LC G++ +A +++++ D
Sbjct: 386 RVIDMLCEEGKVEVACELWKKLLKKNCTPD 415
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 102/204 (50%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ + F + +++ +++ + RV P ++ + +I Y + + L + D+M
Sbjct: 314 YTILMDGYCKKGRFMDAVKVMDEME-ENRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDM 372
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ +++ + GK++ +L++ +++K +PD + L+H ++
Sbjct: 373 LEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCKEGKV 432
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K+FDE K + P+ +T+ LI G+C + EA +L ++M+ V P+A +
Sbjct: 433 WEARKLFDEFEKGSI-PSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCV-PNAFTYNM 490
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
LIKG C VG + EEM+ N
Sbjct: 491 LIKGFCKVGNAREGIRVMEEMLDN 514
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +II + K EV +L + + + +P + C VI +E A ++
Sbjct: 345 NDVTYGVIIEAYCKEKKSGEVLNLLDDML-EKKYIPSSALCCRVIDMLCEEGKVEVACEL 403
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ ++ N +TL++ + GK+ LF EK P +YN L+ G
Sbjct: 404 WKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDEFEKGSIPSTLTYNALIAGMCEG 463
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
L +A +++D M+++ P T+ LI G C E +++ E+M+
Sbjct: 464 GELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEML 512
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 28/238 (11%)
Query: 42 QPLKPFRYNLLHYDLII------TKLGRA-KMFDEVQQILHQLKHDTRVV---------- 84
QP KP +LLH+ I T +G A F + H D++
Sbjct: 32 QPFKPRSTSLLHFHSISAVRSASTAVGAAVDPFTDHPSHHHLAAVDSKSTLLKSYTVTPP 91
Query: 85 ----PEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLNAMLTCGKI 138
P+ + V+S R + L+ ALQ+FD F N +++ ++ +
Sbjct: 92 IKPWPQRLSPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAF 151
Query: 139 DRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ M L + K S C N+ ++ + R + A + F + LQP++ +F
Sbjct: 152 EPMETLISQLHK--SQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFN 209
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
TL+ L R D + ++ + + + P+ L+K LC ++ A+ EEM
Sbjct: 210 TLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEM 267
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 5/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+AQ LKP + + Y +I L +A E +++ Q++ + R VP + +I YG
Sbjct: 142 KAQGLKP---DDVSYTSMIWVLCKAGRLGEAEELFAQMEAE-RSVPCAYAYNTMIMGYGS 197
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A E A ++ + + +V SFN++L + K+D LF++M+K P++ +Y
Sbjct: 198 AGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTY 257
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI++ + R+E+A+++ DEM L P L+T ++ LC +++EA K+ E +
Sbjct: 258 NIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQ 317
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + SLI GL G++ A E+M+
Sbjct: 318 -RGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML 351
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+A +E +F+++ S+ V+S++ L++ + G+ +++F M ++ + DA
Sbjct: 406 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 465
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN ++ G S ++ A+++ +EM ++ +QPT+ T+G ++ GL R+DEA L E+
Sbjct: 466 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE- 524
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + +++SLI G VG + A EEM++ +
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 565
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 103/229 (44%), Gaps = 3/229 (1%)
Query: 35 NPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94
N A + F + Y+ ++ ++ + +IL ++K V P + ++
Sbjct: 448 TSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC-VQPTVATYGAIV 506
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVS 153
+ L+ A +F+E S ++ V +++L++ G+ID + + +M+K ++
Sbjct: 507 DGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLT 566
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ ++N L+ V + + +A F M + + P T+ LI GLC + ++A
Sbjct: 567 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 626
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+DM + + P+ + ++I GL VG ++ A E N DA
Sbjct: 627 WQDMQK-QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 674
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y++II L +E +IL +++H + + P + ++ +AR LE A ++
Sbjct: 253 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHAS-LFPNLLTVNIMVDRLCKARKLEEAYKI 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F+ S ++ +L++ + G++D LF+ +++ + + Y L+ +
Sbjct: 312 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 371
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R ED KVF E+++R +P L T + + V++ + ED +R Y PD +
Sbjct: 372 HGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFED-IRSYGFLPDVR 430
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ LI GL G+ M + +DA
Sbjct: 431 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDA 464
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 108/248 (43%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NLL ++++ +L +A+ +E +I P+ + +C++I G+ ++ A ++
Sbjct: 288 NLLTVNIMVDRLCKARKLEEAYKIFESASQRG-CNPDCVTYCSLIDGLGKKGQVDEAYRL 346
Query: 110 FDEM--SSFN-----------------------------VQRTVKSFNTLLNAMLTC--- 135
F++M + N ++R K TLLN + C
Sbjct: 347 FEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFK 406
Query: 136 -GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G++++ +F+ + Y PD SY+IL+HG + + + +F M ++
Sbjct: 407 AGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARA 466
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++ G C +V +A ++ E+M + V+P + +++ GL + L A EE
Sbjct: 467 YNAVVDGFCKSGKVHKAYEILEEM-KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 525
Query: 254 VRNKIEMD 261
IE++
Sbjct: 526 KSKGIELN 533
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKY 151
+I AR E AL++ +M + V F TL+ A+ G++ D + + ++
Sbjct: 51 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 110
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ PD YN+ + + ++ A K F E+ + L+P V++ ++I+ LC R+ EA
Sbjct: 111 LEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAE 170
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+L M +V P A + ++I G + G
Sbjct: 171 ELFAQMEAERSV-PCAYAYNTMIMGYGSAG 199
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + + A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L +M+ V PD +Y++L++G +++DA +FDEML L P VTF TLI G C
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
RVD A+++ M+ ++ PD + +LI GLC G+L A +EM ++ D
Sbjct: 253 KNGRVDLAMEIYRQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A ++P Y Y ++I L + D+ + ++ D +VP + F +I + +
Sbjct: 198 QASGVQPDVYT---YSVLINGLCKESKMDDANALFDEML-DNGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ V + LI LC E R +A K+ +M+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KP+ + +I C G++ +EM R+
Sbjct: 374 SV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 87/169 (51%), Gaps = 2/169 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L + + V P+ + +I+ + ++ A +FDEM + +F TL++
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252
Query: 134 TCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++D +++ Q++ + + PD +YN L++G L+ A + DEM + L+P +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
T+ TLI G C E ++ A + ++ M++ N++ D + +LI LC G
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKE-NIRLDDVAYTALISXLCQEG 360
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + E Q IL Q++ V+P+ + + VI+ ++ +L A ++
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 447
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D M V ++ T+++ + CG+++ L Q M++ +P+ +Y L+ G
Sbjct: 448 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YNVKPDA 227
+R++++A +V +EM P LVT+ T++ GLC+ R+ EA +L + M PDA
Sbjct: 508 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 567
Query: 228 QVFASLIKGL 237
+ +++ L
Sbjct: 568 ATYRTIVNAL 577
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N++ Y +I RAK +E ++L +++ R P ++ NV + + ++ A
Sbjct: 178 NVVTYTALIAAFARAKKLEEAMKLLEEMRE--RGCPPNLVTYNVLVDALCKLSMVGAAQD 235
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
V +M V +FN+L++ G +D L IM K + P+ +Y+ L+ G
Sbjct: 236 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 295
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---VYNVK 224
S++ +A +V +EM R + P T+ LI+GLC +++EA E M+R
Sbjct: 296 KSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEA----EQMLRRMAGSGCT 351
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD V++S+I C G+L A +EM + + D
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 95/193 (49%), Gaps = 2/193 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F N++ ++ ++ + D+ +++L + + P + + +I +++ A
Sbjct: 245 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG-MRPNVVTYSALIDGLCKSQKFLEA 303
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+V +EM + V +++ L++ + KI+ + + M +PD Y+ ++H
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 363
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S +L +A K EM K+R P +VT+ T+I GLC ++ EA + E M +V P
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLP 423
Query: 226 DAQVFASLIKGLC 238
D ++++I GLC
Sbjct: 424 DVVTYSTVINGLC 436
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 14/238 (5%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFK-NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
T+P + ++ KD KLAL F+ P P F + ++ ++ L R K
Sbjct: 41 TTPRIVGRVVNSLKDAKLALAFFRWAPASIPG---------FSHTAFSWNSLLQVLVRCK 91
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
E + + P+ + VIS + A L AL++ +EM S +
Sbjct: 92 KHREAGDLFRS-ELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTH 150
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
++ AM G +D D + M P+ +Y L+ +++LE+A K+ +EM +R
Sbjct: 151 TPIITAMANAGDLDGAMDHLRSMG--CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRER 208
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
P LVT+ L+ LC V A + + M+ P+ F SL+ G C G +
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE-GGFAPNVMTFNSLVDGFCKRGNV 265
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 102/194 (52%), Gaps = 1/194 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L RAK + +++L +L+ D +P + + +VIS Y +A +E A+ V+++M
Sbjct: 272 HNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDM 331
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ V ++N L+N G + ++Q M + PD +++ L+ G +L
Sbjct: 332 VAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQL 391
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA K++ EM + +QP TF +I+ C + R EAL + M ++ P A ++
Sbjct: 392 DDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNP 451
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 452 VIDVLCKGGKVDEA 465
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 8/221 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L DL I G ++ D V + P+ F VI + +
Sbjct: 196 IEAYAYNKL-MDLFI---GHGRVQDAVA-LFEGWIQGGVYSPDVWSFNVVIKGVCKVGDV 250
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M F + N L+N + ++ + ++ + +++ P+ +Y
Sbjct: 251 QKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTS 310
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R+EDA V+++M+ P +VT+ LI G + A+ + + M+ +
Sbjct: 311 VISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMI-LR 369
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD F+SLI G C G+L A+ EM + I+ +A
Sbjct: 370 RCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNA 410
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 10/197 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I G+A + Q+ R +P+ + F ++I Y R L+ A+++
Sbjct: 339 NVVTYNVLINGYGKAGNMGSAVAVYQQMIL-RRCLPDVVTFSSLIDGYCRCGQLDDAMKI 397
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VSPDACSYNILMH 164
+ EM+ +++Q +F +++ K +R + ++K ++P A YN ++
Sbjct: 398 WTEMAQYHIQPNAHTFCIIIHTFC---KQNRSGEALHFLKKMNMRTDIAPQAFIYNPVID 454
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++++A + EM ++ +P T+ LI G C++ R+ EA+ M+
Sbjct: 455 VLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVET-GCS 513
Query: 225 PDAQVFASLIKGLCAVG 241
PD+ V S I L G
Sbjct: 514 PDSIVVNSFISCLLKSG 530
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVV 168
+ S F ++N L++ + G++ LF+ I SPD S+N+++ G
Sbjct: 187 SKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCK 246
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A ++ + M + P VT L+ GLC V + ++ + R P+
Sbjct: 247 VGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVV 306
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ S+I G C G + A+ +MV
Sbjct: 307 TYTSVISGYCKAGRMEDAMAVYNDMV 332
>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
Length = 388
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 25 ALQLFKNPNPNPN----------------NTEAQPL--------KPFRYNLLHYDLIITK 60
ALQL + P PN +TEAQ L PF ++ Y+ +I
Sbjct: 137 ALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISVGCPF--SVSTYNCVIAN 194
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L R++ ++ + ++ + +E+ F ++ + R + LE A D M+ +
Sbjct: 195 LCRSREMEKAVDVFLYMRK-KKCEADEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPS 253
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
VKS+ LLNA+ G + ++F +M ++ +P SYN+L+ G + R+E A +F
Sbjct: 254 DVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLF 313
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
EM +R +QP +V++ T+I GLC R+DEA+ L D
Sbjct: 314 REMQEREIQPDVVSYTTVIKGLCAARRIDEAIDLFRD 350
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L + + D+ Q++ +++ P I + VI+ R+R A +
Sbjct: 117 DVVTYNTLISGLCKLRRADDALQLMREMEP----APNTITYNTVINGLWRSRKDTEAQAL 172
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM S +V ++N ++ + ++++ D+F M +K D ++ L+ G +
Sbjct: 173 LDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLR 232
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+RLEDA D M + + + ++ L+ LC +A ++ ++M P
Sbjct: 233 DKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIF-NLMVDRGYAPTLV 291
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+KGLC + AL EM +I+ D
Sbjct: 292 SYNVLLKGLCKALRVEHALVLFREMQEREIQPD 324
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P +IF +V++ + RA L+ AL M ++NTL++ + D
Sbjct: 7 VAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSAR 66
Query: 143 DLF-QIMEKYVSPD--ACSYN-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L Q+ + + P A +YN ++ C V + A + + M+ +P +VT+ TLI
Sbjct: 67 ELLEQMWDSGIRPGVMAETYNNVIASFCEVCN-VRKAKGILELMIDSGCKPDVVTYNTLI 125
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
GLC R D+AL+L MR P+ + ++I GL + + A +EM+
Sbjct: 126 SGLCKLRRADDALQL----MREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMI 177
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 111/209 (53%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + FDE +I H++K + R + + +I + L+ A +V
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCGSGNLDGATRV 312
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ EM+ V V +NT+LN L G+I+ +L+++MEK SYNIL+ G +
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 372
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++++A +++ + ++ +T+G L++GLC +++AL + E+ N + D
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 429
Query: 230 FA--SLIKGLCAVGELSLALGFKEEMVRN 256
FA S+I GLC G L G ++M ++
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKH 458
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y +I L R DEV +L Q+ KH + P CN VI+ + RA LE AL+ F
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH---VCNAVINGFVRASKLEDALRFFG 488
Query: 112 EMSSFNVQRTVKSFNTLLNA----------------MLTCG------------------- 136
M S TV ++NTL+N ML G
Sbjct: 489 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGK 548
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
K+D +L+ Q +EK PD +NI++HG S ++EDA +++ EM +R+ P LVT
Sbjct: 549 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHN 608
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TL+ G + A K+ + +++ Y +PD + +KGLC+ +S A+GF + V
Sbjct: 609 TLMEGFYKVRDFERASKIWDHILQ-YGPQPDIISYNITLKGLCSCHRISDAVGFLNDAV 666
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 13/254 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP R+ LL+ +K+P AL +F + P + P+ + H+ I+ +L
Sbjct: 6 KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHT----PY---VFHH--ILKRLFDP 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
K+ V +I+ ++ PE++ VI Y + + + AL +F M F Q ++
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N+LLNA++ K D F E +SP+ +YNIL+ ++ + A ++ + M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
++ P + ++GTLI L + +ALKL ++M V PD + LI G G+
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACYNILIDGFFKKGD 234
Query: 243 LSLALGFKEEMVRN 256
+ A E +++
Sbjct: 235 ILNASEIWERLLKG 248
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E L P NL Y+++I R K FD+ +++L+ + + P+ + +I+ +
Sbjct: 141 ETMGLSP---NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAK 196
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDAC 157
+ AL++FDEM V V +N L++ G I +++++ + K V P+
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
SYN++++G + +++++++ M K L T+ TLI+GLC +D A ++ ++M
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
V PD V+ +++ G G + L
Sbjct: 317 AE-NGVSPDVVVYNTMLNGYLRAGRIEECL 345
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P K + + Y +++ L + ++ IL + + + R + + ++I+ R
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE-NGRGDLDTFAYSSMINGLCR 441
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L+ V D+M+ + N ++N + K++ F ++ K P +
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L++G + R +A+ + EML + +P ++T+ L+ GLC ++D AL L +
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
KPD ++ +I GLC+ G++ AL EM + K
Sbjct: 562 E-KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+++I L DE I +L + + + + ++ + L AL +
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+E + ++++++N + G++D + + M K+ P+ N +++G V +
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+LEDA + F M+ + PT+VT+ TLI GL R EA L ++M+ KP+
Sbjct: 478 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLH-KGWKPNMIT 536
Query: 230 FASLIKGLCAVGELSLAL 247
++ L+ GLC +L +AL
Sbjct: 537 YSLLMNGLCQGKKLDMAL 554
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 12/160 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFD-----EVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
K ++ N++ Y L++ L + K D Q + K D ++ II + S
Sbjct: 528 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM--HNIIIHGLCS---- 581
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ +E ALQ++ EM + + NTL+ +R + ++ I++ PD S
Sbjct: 582 SGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIIS 641
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
YNI + G R+ DA ++ + R + PT +T+ L+
Sbjct: 642 YNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 681
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 7/192 (3%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSF 125
F ++++LHQ+K + RV E+ F + YG+A L E A+ +F M F ++TVKSF
Sbjct: 77 FRSLEEVLHQMKRERRVFLEKN-FIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSF 135
Query: 126 NTLLNAMLTCGKIDRMTDLFQ--IMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
N++LN ++ G +R + + + K + P+A ++N+++ ++ A +VF E
Sbjct: 136 NSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFRE 195
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ R P T+ TL++GLC E R+DEA+ L D M+V P+ F LI LC G
Sbjct: 196 IPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLL-DEMQVEGTFPNLVAFNVLISALCKKG 254
Query: 242 ELSLALGFKEEM 253
+L A + M
Sbjct: 255 DLGRAAKLVDNM 266
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N L ++L+I + R + D+ ++ ++ P+ + ++ + ++ A+ +
Sbjct: 169 NALTFNLVIKAMCRLGLVDKAIEVFREIPLRN-CAPDNYTYSTLMHGLCKEERIDEAVSL 227
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM + +FN L++A+ G + R L M K P+ +YN L+HG +
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCL 287
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A + ++M+ + P VTFGTLI G ++ R + ++ + + +
Sbjct: 288 KGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVS-LEARGHRGNEY 346
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
V++SLI GLC G+ + A+ +EMV
Sbjct: 347 VYSSLISGLCKEGKFNQAMELWKEMV 372
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 88/197 (44%), Gaps = 5/197 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N Y +I+ L + F++ ++ ++ P I++ +I R L+
Sbjct: 339 RGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMV-GKGCGPNTIVYSALIDGLCREGKLD 397
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNIL 162
A EM + ++++L+ G + +++ M + + C Y+IL
Sbjct: 398 EARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVC-YSIL 456
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVY 221
++G + +A V+ +ML R ++ +V + ++I+G C V++ LKL M+ +
Sbjct: 457 INGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGP 516
Query: 222 NVKPDAQVFASLIKGLC 238
V+PD + L+ C
Sbjct: 517 VVQPDVITYNILLNAFC 533
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 127/238 (53%), Gaps = 12/238 (5%)
Query: 35 NPNNTEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVP 85
+ +NT L+ FR+ NL ++ II LGRA + + IL + +
Sbjct: 20 HSSNTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+E ++ +I YG+ +++ ++++F +M V+RT+KS+N L +L G+ F
Sbjct: 79 DEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYF 138
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+++ + + P ++N+++ G +S ++E A + F++M R + P +VT+ T+I G
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+++EA K + M+ N++P + +LIKG +V ++ AL EEM + I+ +A
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNA 255
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 18/217 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + P + + +I Y ++ AL++
Sbjct: 184 DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM ++ +++TLL + K+ + ++M+KY++P D + L+
Sbjct: 243 VEEMKGSGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHC 302
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR-- 219
S L+ A V M++ + +G LI C + D+A+KL K+ ++R
Sbjct: 303 KSGNLDAAADVLKAMIRLSVPTEAGHYGLLIEKFCKAGQYDKAVKLLDKLIEKDIILRPQ 362
Query: 220 -VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+++P+A + +I+ LC G+ S A E +VR
Sbjct: 363 STLHLEPNA--YNPMIEYLCNNGQASKA----ETLVR 393
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 111/209 (53%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + FDE +I H++K + R + + +I + L+ A +V
Sbjct: 254 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCGSGNLDGATRV 312
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ EM+ V V +NT+LN L G+I+ +L+++MEK SYNIL+ G +
Sbjct: 313 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 372
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++++A +++ + ++ +T+G L++GLC +++AL + E+ N + D
Sbjct: 373 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 429
Query: 230 FA--SLIKGLCAVGELSLALGFKEEMVRN 256
FA S+I GLC G L G ++M ++
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKH 458
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 122/254 (48%), Gaps = 13/254 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP R+ LL+ +K+P AL +F + P + P+ + H+ I+ +L
Sbjct: 6 KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHT----PY---VFHH--ILKRLFDP 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
K+ V +I+ ++ PE++ VI Y + + + AL +F M F Q ++
Sbjct: 57 KLVAHVSRIVELIRTQKCKCPEDVAL-TVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N+LLNA++ K D F E +SP+ +YNIL+ ++ + A ++ + M
Sbjct: 116 SYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWM 175
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
++ P + ++GTLI L + +ALKL ++M V PD + LI G G+
Sbjct: 176 WEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPE-RGVTPDVACYNILIDGFFKKGD 234
Query: 243 LSLALGFKEEMVRN 256
+ A E +++
Sbjct: 235 ILNASEIWERLLKG 248
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E L P NL Y+++I R K FD+ +++L+ + + P+ + +I+ +
Sbjct: 141 ETMGLSP---NLQTYNILIKISCRKKQFDKAKELLNWM-WEQGFSPDVFSYGTLINSLAK 196
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDAC 157
+ AL++FDEM V V +N L++ G I +++++ + K V P+
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
SYN++++G + +++++++ M K L T+ TLI+GLC +D A ++ ++M
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
V PD V+ +++ G G + L
Sbjct: 317 AE-NGVSPDVVVYNTMLNGYLRAGRIEECL 345
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 13/199 (6%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y +I L R DEV +L Q+ KH + P CN VI+ + RA LE AL+ F
Sbjct: 432 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPH---VCNAVINGFVRASKLEDALRFFG 488
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPDACSYNILMHGCV 167
M S TV ++NTL+N + K +R ++ + +++ K P+ +Y++LM+G
Sbjct: 489 NMVSKGCFPTVVTYNTLINGL---SKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLC 545
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++L+ A ++ + L++ +P + +I+GLC +V++AL+L +M + V P+
Sbjct: 546 QGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCV-PNL 604
Query: 228 QVFASLIKGLCAVGELSLA 246
+L++G V + A
Sbjct: 605 VTHNTLMEGFYKVRDFERA 623
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 102/219 (46%), Gaps = 3/219 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P K + + Y +++ L + ++ IL + + + R + + ++I+ R
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE-NGRGDLDTFAYSSMINGLCR 441
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L+ V D+M+ + N ++N + K++ F ++ K P +
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L++G + R +A+ + EML + +P ++T+ L+ GLC ++D AL L +
Sbjct: 502 YNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 561
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
KPD ++ +I GLC+ G++ AL EM + K
Sbjct: 562 EK-GFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRK 599
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+++I L DE I +L + + + + ++ + L AL +
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 417
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+E + ++++++N + G++D + + M K+ P+ N +++G V +
Sbjct: 418 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRA 477
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+LEDA + F M+ + PT+VT+ TLI GL R EA L ++M+ KP+
Sbjct: 478 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHK-GWKPNMIT 536
Query: 230 FASLIKGLCAVGELSLAL 247
++ L+ GLC +L +AL
Sbjct: 537 YSLLMNGLCQGKKLDMAL 554
>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
Length = 388
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 28/217 (12%)
Query: 25 ALQLFKNPNPNPN----------------NTEAQPL--------KPFRYNLLHYDLIITK 60
ALQL + P PN +TEAQ L PF ++ Y+ +I
Sbjct: 137 ALQLMREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMISVGCPF--SVSTYNCVIAN 194
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L R++ ++ + ++ + +E+ F ++ + R + LE A D M+ +
Sbjct: 195 LCRSREMEKAVDVFLYMRK-KKCETDEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPS 253
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
VKS+ LLNA+ G + ++F +M ++ +P SYN+L+ G + R+E A +F
Sbjct: 254 DVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLF 313
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
EM +R +QP +V++ T+I GLC R+DEA+ L D
Sbjct: 314 REMQEREIQPDVVSYTTVIKGLCAARRIDEAIDLFRD 350
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L + + D+ Q++ +++ P I + VI+ R+R A +
Sbjct: 117 DVVTYNTLISGLCKVRRADDALQLMREMEP----APNTITYNTVINGLWRSRKDTEAQAL 172
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM S +V ++N ++ + ++++ D+F M +K D ++ L+ G +
Sbjct: 173 LDEMISVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLR 232
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+RLEDA D M + + + ++ L+ LC +A ++ ++M P
Sbjct: 233 DKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQKACEIF-NLMVDRGYAPTLV 291
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+KGLC + AL EM +I+ D
Sbjct: 292 SYNVLLKGLCKALRVEHALVLFREMQEREIQPD 324
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P +IF +V++ + RA L+ AL M ++NTL++ + D
Sbjct: 7 VAPNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSAR 66
Query: 143 DLF-QIMEKYVSPD--ACSYN-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L Q+ + + P A +YN ++ C V + A + + M+ +P +VT+ TLI
Sbjct: 67 ELLEQMWDSGIRPGVMAETYNNVIASFCEVCN-VRKAKGILELMIDSGCKPDVVTYNTLI 125
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
GLC R D+AL+L MR P+ + ++I GL + + A +EM+
Sbjct: 126 SGLCKVRRADDALQL----MREMEPAPNTITYNTVINGLWRSRKDTEAQALLDEMI 177
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 8/227 (3%)
Query: 23 KLALQLFKNPNPNPNNT--EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
K L +++ P P+ A + ++ + +I + F + Q+ ++K +
Sbjct: 34 KTTLSPYESDAPIPDQIFKSASQMGSYKSGDSTFYSLIENYANSGDFGTLFQVFDRMKRE 93
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKID 139
RV E+ F V YG+A L E A+++F M F +RTV+SFN++LN ++ G
Sbjct: 94 RRVFIEKN-FILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFH 152
Query: 140 RMTDLFQIM---EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
R + ++ + +SP+ S+N+++ ++ A +VF EM ++ +P + T+ T
Sbjct: 153 RALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCT 212
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
L+ GLC E R+DEA+ L D M++ P + F LI GLC G++
Sbjct: 213 LMDGLCKEDRIDEAVLLL-DEMQIEGCFPSSVTFNVLINGLCKKGDM 258
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMT 142
VP E+ + +I+ L+ A+ + D M + ++ TL+N ++ G+ +D +
Sbjct: 274 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 333
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + E+ + +Y+ L+ G + E+A ++ +M+++ QP +V + LI GLC
Sbjct: 334 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 393
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E ++DEA ++ +M+ P+A ++SLIKG G A+ +EM +N
Sbjct: 394 REGKLDEAKEILCEMVN-KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN 446
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +I+ L + + +E + ++ + P +++ +I R L+ A ++
Sbjct: 346 NEYAYSTLISGLFKEEKSEEAMGLWKKMV-EKGCQPNIVVYSALIDGLCREGKLDEAKEI 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + ++++L+ G + +++ M K P+ Y++L+HG
Sbjct: 405 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 464
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDA 227
+L +A ++ ML R L+P +V + ++I+GLC V+ LKL +M+ + + +PD
Sbjct: 465 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 524
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L++ LC +S A+ M+
Sbjct: 525 VTYNILLRALCKQNSISHAIDLLNSML 551
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP EI + +I L A+ ++ M ++ V +++++++ + G ++
Sbjct: 449 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLK 508
Query: 144 LFQIM---EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF M E PD +YNIL+ + A + + ML R P L+T +
Sbjct: 509 LFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 568
Query: 201 LCLEL---------------------RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L +L R+ A K+ E M++ + + P+A + +I LC
Sbjct: 569 LREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKF-LPPNASTWERIIPELC 626
>gi|224111048|ref|XP_002315730.1| predicted protein [Populus trichocarpa]
gi|222864770|gb|EEF01901.1| predicted protein [Populus trichocarpa]
Length = 760
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 113/212 (53%), Gaps = 7/212 (3%)
Query: 48 RYNLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
R L+ +D II LGR M + + I+ + +E +F +I YG+A +
Sbjct: 140 RAGLIQHDRETHMKIIQILGRYSMLNHARCIVLEDMPKKGFELDEDMFVLLIDSYGKAGI 199
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ ++++F +M V+R+VKS+N L ++ G+ F +++++ + P +YN+
Sbjct: 200 VQESVKMFSKMKELGVERSVKSYNALFKVIVRKGRYMMAKRFFNKMLDEGIGPTRHTYNV 259
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G +S RL A + +++M R + P +VT+ T+I G R++EA KL + M+
Sbjct: 260 LIWGFFLSMRLRTAVRFYEDMKVRGISPDVVTYNTMINGYYRHKRMEEAEKLFAE-MKAK 318
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ P + ++IKG AV ++ L EEM
Sbjct: 319 DIAPTVISYTTMIKGYFAVDRINDGLRLLEEM 350
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 100/219 (45%), Gaps = 10/219 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E +++ ++K + P I + +I Y + L++
Sbjct: 288 DVVTYNTMINGYYRHKRMEEAEKLFAEMKAKD-IAPTVISYTTMIKGYFAVDRINDGLRL 346
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM S ++ ++ TLL + GK+ D+ +++ + ++P D + L++
Sbjct: 347 LEEMKSVGIKPNNVTYTTLLPDLCDAGKMTEAKDILKEMVRRRIAPKDNSIFLKLLNSQC 406
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------V 220
+ L+ A V D M+K + +G LI C D+A+K + ++
Sbjct: 407 KAGDLKAAVDVLDGMIKLSIPSEAGHYGVLIENFCKAEEYDQAVKFVDKLIENDIILRPQ 466
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ ++ + +I+ LC+ G+ A ++++ +E
Sbjct: 467 STLEMESGAYNPVIQYLCSHGQTGKAEILFRQLLKKGVE 505
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I+ Y + L+ ++ M + Q V +++ L+N + GK+D +L
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++ + P+ ++ L+HG + +++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + + L ++M+ + +KPD + +LI G C G+L +AL + +M++ I +D
Sbjct: 289 KGELKQVHDLIDEMI-MNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLD 345
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDA 156
G RL A VFD ++ + ++ +V SFNTL+N + G +D L M PD
Sbjct: 150 GEMRL---AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDV 206
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y+IL++G +L++A ++F+EML L P VTF TLI+G C +VD A+++ +
Sbjct: 207 YTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQ 266
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M+ + PD + +LI GLC GEL +EM+ N ++ D
Sbjct: 267 MLS-QGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + P+ + +I+ + L+ A ++F+EM + +F TL++ K+
Sbjct: 198 HASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKV 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + +SPD +YN L++G L+ + DEM+ L+P +++ TL
Sbjct: 258 DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
I G C E ++ AL+L+ M++ +++ D + +LI LC G G E+M+R
Sbjct: 318 IDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTALISCLCREGR----AGDAEKMLR 370
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD+M ++ TV +N+L+N G +DR L M K ++P A SY+ L+ G
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L A ++ EM +R + TF LI G C + ++DEA +L + M+ NV P+
Sbjct: 456 NGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEV 514
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +I+G C VG + A ++MV ++ D
Sbjct: 515 TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPD 547
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 102/218 (46%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + Y+ +I + D + +L + + + P + +I+ R L
Sbjct: 402 KGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG-LTPTAASYSPLIAGLCRNGDLS 460
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+++ EM+ + +F L+N K+D LF ++++ V P+ ++N+++
Sbjct: 461 SAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMI 520
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + + A++++D+M++ L+P T+ +LI GLCL V +A + D+ Y V
Sbjct: 521 EGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAV 580
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + A L+ GL G + +EM +++D
Sbjct: 581 LNNFSLTA-LLYGLFREGRFTETYHLWDEMAVRGVKLD 617
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
+E YN+L Y L K R + EV+ ++ + V +E+ + ++ +
Sbjct: 226 SEGVKASAVPYNVLMYGL--CKNMRVQEAVEVKNVMVNIG----VTADEVTYRTLVYGFC 279
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSP 154
R LE AL++ +M + + + +++ + K + + + F + K + P
Sbjct: 280 RMEELEMALRITHDMIRLGFVPSEANCSFMIDELR---KKELVEEAFSLACKLGDLGMVP 336
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +YN L+ + R +DA ++F EM R L+P VT+ LI+ LC +++AL L
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 396
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D MR +K + SLI G C G L A G MV+ +
Sbjct: 397 -DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ ++ L A + EM + NV ++N L+ T G +++ DL
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + S+NIL+ G + ++++A + ++ + P +++ T+I+ LC
Sbjct: 746 HSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKM 805
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++A +L +M+ +KPD + I+ GE ALG M+R+ ++
Sbjct: 806 GDINKAFELWNEML-YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQ 859
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N + +I + K DE ++ ++ D+ V+P E+ F +I Y + A Q
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMI-DSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
++D+M ++ ++ +L++ + + + + +E Y + S L++G
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLF 594
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R + + ++DEM R ++ LV+F ++Y + +++ L + M+ VKPD
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE-MKEQGVKPDD 653
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +I L + AL ++MV
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMV 680
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 3/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P++I + +I + + AL +D+M + L+N + G +
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAE 708
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L +++ V P+ +YN + +E A + ML+ L ++V+F LI GL
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSFNILIKGL 767
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ EA+ L + PD ++++I LC +G+++ A EM+ ++ D
Sbjct: 768 CKAGKIQEAIDLMRKITES-GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
+ R A +FD+M V + + A +D L ME + V A
Sbjct: 175 KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAV 234
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN+LM+G + R+++A +V + M+ + VT+ TL+YG C ++ AL++ DM
Sbjct: 235 PYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDM 294
Query: 218 MRVYNVKPDAQ 228
+R+ V +A
Sbjct: 295 IRLGFVPSEAN 305
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+A ++ A+ + +++ S++T+++ + G I++ +L+ +++ K + PD
Sbjct: 769 KAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVV 828
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+YNI + C V + A ++ M++ +QP T+ L+ G+ L L D
Sbjct: 829 AYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 6/216 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y +I+ L + + + L++ V+ + + + R
Sbjct: 544 LKPDNYT---YRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFT 600
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E ++DEM+ V+ + SF ++ A L ++ LF+ M E+ V PD Y +
Sbjct: 601 E-TYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + A +D+M+ P VT LI LC + A L ++M+ N
Sbjct: 660 IDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML-AGN 718
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
V P+ + + G++ A M++ +
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y I +L AK F + ++L K + E+ + ++ YG + + EHA ++FDEM
Sbjct: 93 YSAFIRRLREAKKFSTIHEVLQYQKKFDDIKSEDFVI-RIMLLYGYSGMAEHAHKLFDEM 151
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRR 171
N +RTVKSFN LL+A + K+D F ++ EK ++PD +YN ++ +
Sbjct: 152 PELNCERTVKSFNALLSAYVNSRKLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTGS 211
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLI---YGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++D +F+E+ K +P L++F TL+ Y L + D D+M+ N+ P+ +
Sbjct: 212 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIW----DLMKSKNLAPNIR 267
Query: 229 VFASLIKGLC 238
+ S ++GL
Sbjct: 268 SYNSRVRGLT 277
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 99/198 (50%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I L R D++ I +L+ + P+ I F ++ + R L ++
Sbjct: 195 DLVTYNTMIKALCRTGSMDDILSIFEELEKNG-FEPDLISFNTLLEEFYRRELFVEGDRI 253
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+D M S N+ ++S+N+ + + K DL +M+ + +SPD +YN +
Sbjct: 254 WDLMKSKNLAPNIRSYNSRVRGLTRNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRG 313
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE+ K ++EM ++ L P VT+ LI LC + +D A+++ E+ ++ + +
Sbjct: 314 DNNLEEVMKWYNEMKEKGLTPDTVTYCLLIPLLCKKGDLDRAVEISEEAIK-HKLLSRPN 372
Query: 229 VFASLIKGLCAVGELSLA 246
++ +++ L G++ A
Sbjct: 373 MYKPVVERLMGAGKIDEA 390
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+L++G S E A K+FDEM + + T+ +F L+ ++DEA K +++
Sbjct: 132 MLLYG--YSGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSRKLDEAKKAFKELPEK 189
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + ++IK LC G + L EE+ +N E D
Sbjct: 190 LGITPDLVTYNTMIKALCRTGSMDDILSIFEELEKNGFEPD 230
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + E Q IL Q++ V+P+ + + VI+ ++ +L A ++
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKL 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D M V ++ T+++ + CG+++ L Q M++ +P+ +Y L+ G
Sbjct: 326 LDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YNVKPDA 227
+R++++A +V +EM P LVT+ T++ GLC+ R+ EA +L + M PDA
Sbjct: 386 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 445
Query: 228 QVFASLIKGL 237
+ +++ L
Sbjct: 446 ATYRTIVNAL 455
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 105/210 (50%), Gaps = 10/210 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + + IIT + A D L + D P + + +I+ + RA+ LE A
Sbjct: 21 FAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD----PNVVTYTALIAAFARAKKLEEA 76
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+++ +EM + ++N L++A+ + D+ + M E +P+ ++N L+ G
Sbjct: 77 MKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDG 136
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++DA K+ M+ + ++P +VT+ LI GLC + EA ++ E+ M+ V P
Sbjct: 137 FCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE-MKASGVTP 195
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
DA +++LI GLC ++ A E+M+R
Sbjct: 196 DAFTYSALIHGLCKADKIEEA----EQMLR 221
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N++ Y +I RAK +E ++L +++ R P ++ NV + + ++ A
Sbjct: 56 NVVTYTALIAAFARAKKLEEAMKLLEEMRE--RGCPPNLVTYNVLVDALCKLSMVGAAQD 113
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
V +M V +FN+L++ G +D L IM K + P+ +Y+ L+ G
Sbjct: 114 VVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 173
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---VYNVK 224
S++ +A +V +EM + P T+ LI+GLC +++EA E M+R
Sbjct: 174 KSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEA----EQMLRRMAGSGCT 229
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
PD V++S+I C G+L A +EM + +
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 95/193 (49%), Gaps = 2/193 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F N++ ++ ++ + D+ +++L + + P + + +I +++ A
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG-MRPNVVTYSALIDGLCKSQKFLEA 181
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+V +EM + V +++ L++ + KI+ + + M +PD Y+ ++H
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S +L +A K EM K+R P +VT+ T+I GLC ++ EA + + M +V P
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLP 301
Query: 226 DAQVFASLIKGLC 238
D ++++I GLC
Sbjct: 302 DVVTYSTVINGLC 314
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 6/192 (3%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++L ++K P+ +I+ A L+ A+ D + S V ++ L+ A
Sbjct: 11 ELLEEMKS-AGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSMGCDPNVVTYTALIAA 66
Query: 132 MLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
K++ L + M E+ P+ +YN+L+ + A V +M++ P
Sbjct: 67 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPN 126
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++TF +L+ G C VD+A KL +M ++P+ +++LI GLC + A
Sbjct: 127 VMTFNSLVDGFCKRGNVDDARKLL-GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVL 185
Query: 251 EEMVRNKIEMDA 262
EEM + + DA
Sbjct: 186 EEMKASGVTPDA 197
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ + R F E ++I ++ VVP+ + F ++I+ + R R L+ AL F +M
Sbjct: 226 YNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
F + + L++ G ++ + +++E+ D +YN +++G + L
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA K+FDEM++R P TF TLI+G C + + +AL L M + N+KPD + +
Sbjct: 345 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ-RNIKPDIVAYNT 403
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C VGE+ A + M+ KI
Sbjct: 404 LIDGFCKVGEMEKASELWDGMISRKI 429
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + FD+V+ L +++ + + + + + +I Y R LLE A ++
Sbjct: 117 NVYTLNIMVNALCKDGKFDDVKSFLSEMEGNG-IYADMVTYNTLIGAYCREGLLEEAFEI 175
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+ M+ ++ ++ ++N ++N + G+ R L +++ +SPD +YN L+
Sbjct: 176 MNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCR 235
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+A ++F EML++ + P LV+F +LI +D+AL DM + + + PD
Sbjct: 236 RDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKK-FGLVPDNV 294
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ L+ G C G + AL ++EM+ +D
Sbjct: 295 IYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLD 327
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
V + I + +++ + ++L A ++FDEM +F TL++ G + +
Sbjct: 325 VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALS 384
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF M ++ + PD +YN L+ G +E A +++D M+ R++ P +T+G LI C
Sbjct: 385 LFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYC 444
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V EA +L D+M +KP ++IKG C G+ S A F M+ + D
Sbjct: 445 SVGHVSEAFRL-WDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD 502
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 2/175 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
++ P I + +I+ Y + A +++D M ++ T+ + NT++ G +
Sbjct: 428 KIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKA 487
Query: 142 TD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+ L +++ K V+PD SYN L++G V ++ A+ ++M K L P ++T+ ++ G
Sbjct: 488 DEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
C + R+ EA + M+ + PD + +LI G L+ A F +EM++
Sbjct: 548 FCRQGRMQEAELVLRKMIE-KGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQ 601
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 8/171 (4%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
++F +I Y +AR L + F + S ++ + N+LL ++ KID + +++
Sbjct: 49 LVFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLV---KIDWVELAWEV 105
Query: 148 MEKYVSP----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ V + + NI+++ + +D EM + +VT+ TLI C
Sbjct: 106 HREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCR 165
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E ++EA ++ M +KP + ++I GLC G + A G EM+
Sbjct: 166 EGLLEEAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEML 215
>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 553
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 7/198 (3%)
Query: 67 FDEVQQILHQLKH-DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+ EV I Q++ D R P+ + + ++S YG+AR E AL VF+EM V+ T K++
Sbjct: 291 YKEVSNIYDQMQRADLR--PDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAY 348
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LL+A G +++ +F+ M ++Y PD CSY ++ V + +E A K F ++
Sbjct: 349 NILLDAFSISGMVEQAQTVFKSMRRDRYF-PDLCSYTTMLSAYVNADDMEGAEKFFKRLI 407
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +P +VT+GTLI G ++ +K E+M+ V +K + + +++ G+
Sbjct: 408 QDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEML-VRGIKANQTILTTIMDAYGKSGDF 466
Query: 244 SLALGFKEEMVRNKIEMD 261
A+ + +EM N I D
Sbjct: 467 DSAVHWFKEMESNGIPPD 484
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ + + E +++ L +D + + P++ +F +I Y +A E A + F
Sbjct: 208 YQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMMIYMYKKAGSYEKARKTFA 267
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
M+ +Q+T ++N+L++ ++ + D Q+ + PD SY +L+ +RR
Sbjct: 268 LMAERGIQQTTVTYNSLMSFETDYKEVSNIYD--QMQRADLRPDVVSYALLVSAYGKARR 325
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT + L+ + V++A + + M R PD +
Sbjct: 326 EEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYF-PDLCSYT 384
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++ ++ A F + ++++ E
Sbjct: 385 TMLSAYVNADDMEGAEKFFKRLIQDDFE 412
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ + + + ++IT G+ F+ +++L L + VP + ++ YG+ +A
Sbjct: 131 WDFGKMDFFMLITAYGKLGDFNGAEKVLG-LMNKNGYVPNVVSQTALMEAYGKGGRYNNA 189
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYNIL 162
+F M + + + ++ +L + K +LF + + PD +N++
Sbjct: 190 EAIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQKMFNMM 249
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A K F M +R +Q T VT+ +L + E E + + M R +
Sbjct: 250 IYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSL---MSFETDYKEVSNIYDQMQRA-D 305
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A L+ AL EEM+
Sbjct: 306 LRPDVVSYALLVSAYGKARREEEALAVFEEML 337
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 111/209 (53%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + FDE +I H++K + R + + +I + L+ A +V
Sbjct: 229 NIPSYNVMINGLCKCGKFDESFEIWHRMKKNERG-QDLYTYSTLIHGLCGSGNLDGATRV 287
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ EM+ V V +NT+LN L G+I+ +L+++MEK SYNIL+ G +
Sbjct: 288 YKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFEN 347
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++++A +++ + ++ +T+G L++GLC +++AL + E+ N + D
Sbjct: 348 AKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEE---AENGRGDLDT 404
Query: 230 FA--SLIKGLCAVGELSLALGFKEEMVRN 256
FA S+I GLC G L G ++M ++
Sbjct: 405 FAYSSMINGLCREGRLDEVAGVLDQMTKH 433
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y +I L R DEV +L Q+ KH + P CN VI+ + RA LE AL+ F
Sbjct: 407 YSSMINGLCREGRLDEVAGVLDQMTKHGCKPNP---YVCNAVINGFVRASKLEDALRFFG 463
Query: 112 EMSSFNVQRTVKSFNTLLNA----------------MLTCG------------------- 136
M S TV ++NTL+N ML G
Sbjct: 464 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGK 523
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
K+D +L+ Q +EK PD +NI++HG S ++EDA +++ EM +R P LVT
Sbjct: 524 KLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHN 583
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TL+ G + A K+ + +++ Y ++PD + +KGLC+ +S A+GF + V
Sbjct: 584 TLMEGFYKVRDFERASKIWDHILQ-YGLQPDIISYNITLKGLCSCHRISDAVGFLNDAV 641
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E L P NL Y+++I R K FD+ +++L+ + P+ + +I+ +
Sbjct: 116 ETMGLSP---NLQTYNILIKISCRKKQFDKAKELLNWM-WGQGFSPDVFSYGTLINSLAK 171
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDAC 157
+ AL++FDEM V V +N L++ G I +++++ + K V P+
Sbjct: 172 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 231
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
SYN++++G + +++++++ M K L T+ TLI+GLC +D A ++ ++M
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 291
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGEL 243
V PD V+ +++ G G +
Sbjct: 292 AE-NGVSPDVVVYNTMLNGYLRAGRI 316
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 22/267 (8%)
Query: 8 SPFRLASLLRLQKDPKLALQLF-KNPNPNPNNTEAQPLKPFRY---------NLLHYDLI 57
+P+ +L+ DPKL + KN P+ Q L F+ + Y+ +
Sbjct: 42 TPYVFHHILKRLFDPKLVAHAYAKNSMPD------QALDIFQRMHEIFGCQPGIRSYNSL 95
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSF 116
+ L + +DE + L +T + + N+ I R + + A ++ + M
Sbjct: 96 LNALIESNKWDEAESFF--LYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQ 153
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDA 175
V S+ TL+N++ G + LF M E+ V+PD YNIL+ G + +A
Sbjct: 154 GFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNA 213
Query: 176 WKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++++ +LK + P + ++ +I GLC + DE+ ++ M + + D +++LI
Sbjct: 214 SEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ-DLYTYSTLI 272
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GLC G L A +EM N + D
Sbjct: 273 HGLCGSGNLDGATRVYKEMAENGVSPD 299
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+++I L DE I +L + + + + ++ + L AL +
Sbjct: 334 VVSYNILIRGLFENAKVDEAISIW-ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSIL 392
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+E + ++++++N + G++D + + M K+ P+ N +++G V +
Sbjct: 393 EEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRA 452
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+LEDA + F M+ + PT+VT+ TLI GL R EA L ++M++ KP+
Sbjct: 453 SKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQ-KGWKPNMIT 511
Query: 230 FASLIKGLCAVGELSLAL 247
++ L+ GLC +L +AL
Sbjct: 512 YSLLMNGLCQGKKLDMAL 529
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 10/263 (3%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-----LLHYDLIIT 59
K SP R+ LL+ +K+P AL +F + P + P+ ++ L L+
Sbjct: 6 KSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHT----PYVFHHILKRLFDPKLVAH 61
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
+ M D+ I ++ P + ++++ + + A F + +
Sbjct: 62 AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLS 121
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
++++N L+ + D+ +L M + SPD SY L++ + + DA K+
Sbjct: 122 PNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKL 181
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
FDEM +R + P + + LI G + + A ++ E +++ +V P+ + +I GLC
Sbjct: 182 FDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241
Query: 239 AVGELSLALGFKEEMVRNKIEMD 261
G+ + M +N+ D
Sbjct: 242 KCGKFDESFEIWHRMKKNERGQD 264
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFD-----EVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
K ++ N++ Y L++ L + K D Q + K D ++ II + S
Sbjct: 503 KGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM--HNIIIHGLCS---- 556
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ +E ALQ++ EM N + + NTL+ +R + ++ I++ + PD S
Sbjct: 557 SGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIIS 616
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
YNI + G R+ DA ++ + R + PT +T+ L+ G
Sbjct: 617 YNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQG 658
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II LGRA + + IL + + V +E +F +I YG+A +++ A+++F +M
Sbjct: 160 IIEILGRASKLNHARCILLDMPNKG-VQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDA 175
V+R+VKS++ L ++ G+ F M + + P +YN+++ G +S RLE A
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ +++M R + P +VT+ T+I G C ++EA + + M+ N+ P + ++IK
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTE-MKGKNIAPTVISYTTMIK 337
Query: 236 GLCAVGELSLALGFKEEM 253
G +V AL EEM
Sbjct: 338 GYVSVSRADDALRLFEEM 355
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE A + +++M S + V ++NT++N ++ F M+ K ++P SY
Sbjct: 275 LETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTT 334
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G V R +DA ++F+EM +P +T+ TL+ GLC ++ EA K+ +M+ +
Sbjct: 335 MIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRH 394
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F L+ C G+L A+ + M+R I +A
Sbjct: 395 FAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEA 435
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 10/219 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R KM +E +Q ++K + P I + +I Y + AL++
Sbjct: 293 DVVTYNTMINGYCRFKMMEEAEQFFTEMK-GKNIAPTVISYTTMIKGYVSVSRADDALRL 351
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
F+EM + + +++TLL + K+ L +++ ++ +P S + + C
Sbjct: 352 FEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQC 411
Query: 169 SRR-LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------V 220
L+ A V M++ + +G LI C D+A+KL E+++
Sbjct: 412 KHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQ 471
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ +A + +I+ LC G+ A F ++++ I+
Sbjct: 472 STLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ 510
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 10/204 (4%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQL-------KHDTRVVPEEIIFCNVISFYGRARLLEH 105
HY ++I +A M+D+ ++L L + + + E + +I +
Sbjct: 437 HYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGK 496
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A F ++ +Q V +FN L+ G D ++ +IM + VS DA SY +L+
Sbjct: 497 ADTFFRQLLKKGIQDEV-AFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIK 555
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ DA D M++ P F +++ L + RV A ++ M+ +
Sbjct: 556 SYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLD-KGIT 614
Query: 225 PDAQVFASLIKGLCAVGELSLALG 248
+ + A +++ L G ALG
Sbjct: 615 ENLDLVAKILEALFMRGHDEEALG 638
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+ D +ILH++ + P++ + V+S A ++ A+ + EM + V ++
Sbjct: 97 RYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVV-AAEA 155
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
FN +L AML G + LF+ M+ K P A +YN+L+HG +V R A V M
Sbjct: 156 FNPVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRME 215
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ + P ++T+G ++ GL RV +A K+ E+M R + + V++++I G C GE+
Sbjct: 216 REGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMER-NGLARNEFVYSTVITGFCKSGEI 274
Query: 244 SLALGFKEEMVRNKI 258
AL E MV + +
Sbjct: 275 DCALKVWEAMVASPV 289
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 93/213 (43%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +IT ++ D ++ + + V P +++ +I + A +
Sbjct: 257 NEFVYSTVITGFCKSGEIDCALKVWEAMVA-SPVRPNVVLYSAMIGGLANFGKMTEAELL 315
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F EM + ++ +++ G R +++ ++ P+A SY+IL++G
Sbjct: 316 FREMIDSKCAPNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCN 375
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL+DA V+ ML R P + + ++I GLC+ VD L+L DM+ + PD
Sbjct: 376 VGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVI 435
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ GL +L A+ M+ + D
Sbjct: 436 SYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPD 468
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 97/199 (48%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++ L R + ++ +++ + + E ++ VI+ + ++ ++ AL+V
Sbjct: 222 GVMTYGAVVDGLVRCGRVKDAWKVAEEMERNG-LARNEFVYSTVITGFCKSGEIDCALKV 280
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++ M + V+ V ++ ++ + GK+ LF ++++ +P+ +Y ++ G
Sbjct: 281 WEAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNIITYGSMIQGYFK 340
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A V++EM+ P V++ LI GLC R+ +A+ + + M+ PD
Sbjct: 341 IGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLD-RGCAPDTI 399
Query: 229 VFASLIKGLCAVGELSLAL 247
+ S+IKGLC G + L
Sbjct: 400 AYTSMIKGLCVSGMVDGGL 418
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA P R N++ Y +I L E + + ++ D++ P I + ++I Y +
Sbjct: 282 EAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMI-DSKCAPNIITYGSMIQGYFK 340
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
AL V++EM S++ L+N + G++ D M ++++ +PD +
Sbjct: 341 IGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIA 400
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y ++ G VS ++ ++F +ML P ++++ L+ GL L + A+ L M
Sbjct: 401 YTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRM 460
Query: 218 M 218
+
Sbjct: 461 L 461
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
II LGRA + + IL + + V +E +F +I YG+A +++ A+++F +M
Sbjct: 160 IIEILGRASKLNHARCILLDMPNKG-VQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKEL 218
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDA 175
V+R+VKS++ L ++ G+ F M + + P +YN+++ G +S RLE A
Sbjct: 219 GVERSVKSYDALFKEIMRRGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETA 278
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ +++M R + P +VT+ T+I G C ++EA + + M+ N+ P + ++IK
Sbjct: 279 KRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTE-MKGKNIAPTVISYTTMIK 337
Query: 236 GLCAVGELSLALGFKEEM 253
G +V AL EEM
Sbjct: 338 GYVSVSRADDALRLFEEM 355
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE A + +++M S + V ++NT++N ++ F M+ K ++P SY
Sbjct: 275 LETAKRFYEDMKSRGISPDVVTYNTMINGYCRFKMMEEAEQFFTEMKGKNIAPTVISYTT 334
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G V R +DA ++F+EM +P +T+ TL+ GLC ++ EA K+ +M+ +
Sbjct: 335 MIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRH 394
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F L+ C G+L A+ + M+R I +A
Sbjct: 395 FAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIPTEA 435
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 10/219 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R KM +E +Q ++K + P I + +I Y + AL++
Sbjct: 293 DVVTYNTMINGYCRFKMMEEAEQFFTEMK-GKNIAPTVISYTTMIKGYVSVSRADDALRL 351
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
F+EM + + +++TLL + K+ L +++ ++ +P S + + C
Sbjct: 352 FEEMKAAGEKPNDITYSTLLPGLCDAEKLPEARKILTEMVTRHFAPKDNSIFMRLLSCQC 411
Query: 169 SRR-LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------V 220
L+ A V M++ + +G LI C D+A+KL E+++
Sbjct: 412 KHGDLDAAMHVLKAMIRLSIPTEAGHYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQ 471
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ +A + +I+ LC G+ A F ++++ I+
Sbjct: 472 STLEMEASAYNLIIQYLCNHGQTGKADTFFRQLLKKGIQ 510
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 10/204 (4%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQL-------KHDTRVVPEEIIFCNVISFYGRARLLEH 105
HY ++I +A M+D+ ++L L + + + E + +I +
Sbjct: 437 HYGILIENCCKAGMYDQAVKLLENLVEKEIILRPQSTLEMEASAYNLIIQYLCNHGQTGK 496
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A F ++ +Q V +FN L+ G D ++ +IM + VS DA SY +L+
Sbjct: 497 ADTFFRQLLKKGIQDEV-AFNNLIRGHAKEGNPDLAFEMLKIMGRRGVSRDAESYKLLIK 555
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ DA D M++ P F +++ L + RV A ++ M+ +
Sbjct: 556 SYLSKGEPADAKTALDSMIENGHSPDSALFRSVMESLFADGRVQTASRVMNSMLD-KGIT 614
Query: 225 PDAQVFASLIKGLCAVGELSLALG 248
+ + A +++ L G ALG
Sbjct: 615 ENLDLVAKILEALFMRGHDEEALG 638
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
K R N++ Y ++ L + + + ++L + ++ P I + ++ +F ++L
Sbjct: 322 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 380
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A ++F+EM ++ + ++++L+N + +ID +F +M K D SYN L
Sbjct: 381 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++R+ED K+F EM +R L VT+ TLI G VD+A + M +
Sbjct: 440 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS-QMDFFG 498
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + L+ GLC GEL AL E+M + ++++D
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 537
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L DE Q+ L + + + + +I+ + +A+ +E +++
Sbjct: 397 DIVTYSSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 455
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EMS + ++NTL+ G +D+ + F M+ + +SPD +YNIL+ G
Sbjct: 456 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 515
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F++M KR + +VT+ T+I G+C +V+EA L + + +KPD
Sbjct: 516 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIV 574
Query: 229 VFASLIKGLCAVGEL 243
+ +++ GLC G L
Sbjct: 575 TYTTMMSGLCTKGLL 589
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 109/190 (57%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 834 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 892
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + G+ + L M E+ ++PD +++ L+ V
Sbjct: 893 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 952
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P++VT+ +LI G C+ R+DEA ++ E M+ + PD
Sbjct: 953 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVV 1011
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 1012 TYNTLIKGFC 1021
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + ++L + + ++
Sbjct: 889 ALNLFKE-------METKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDM-IERKIN 937
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + + L A +++DEM ++ ++ ++++L+N ++D +
Sbjct: 938 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 997
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K+ PD +YN L+ G +R+E+ +VF EM +R L VT+ LI GL
Sbjct: 998 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 1057
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D A ++ ++M+ V P+ + +L+ GLC G+L A+ E + R+K+E
Sbjct: 1058 AGDCDMAQEIFKEMVS-DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 1112
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I DE +Q+ + KH P+ + + +I + + + +E +
Sbjct: 974 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGM 1030
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+VF EMS + ++N L+ + G D ++F +++ V P+ +YN L+ G
Sbjct: 1031 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 1090
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +LE A VF+ + + +++PT+ T+ +I G+C +V++ L + + + VKPD
Sbjct: 1091 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPD 1149
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G C G A +EM
Sbjct: 1150 VVAYNTMISGFCRKGSKEEADALFKEM 1176
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++++ + R + A+ + D+M + + ++N +++++ +++ D
Sbjct: 256 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 315
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ +E K + P+ +Y L++G S R DA ++ +M+K+++ P ++T+ L+
Sbjct: 316 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 375
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+V EA +L E+M+R+ ++ PD ++SLI GLC
Sbjct: 376 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLC 409
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 121/244 (49%), Gaps = 19/244 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D LA L N E L+P +L Y+ II L + K D+ + +++
Sbjct: 848 RGDTDLAFNLL-------NKMEQGKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEME 897
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ P + + ++IS YGR A ++ +M + V +F+ L++A +
Sbjct: 898 TKG-IRPNVVTYSSLISCLCNYGR---WSDASRLLSDMIERKINPDVFTFSALIDAFVKE 953
Query: 136 GKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK+ L+ +++++ + P +Y+ L++G + RL++A ++F+ M+ + P +VT+
Sbjct: 954 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 1013
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI G C RV+E +++ +M + + + + LI+GL G+ +A +EMV
Sbjct: 1014 NTLIKGFCKYKRVEEGMEVFREMSQ-RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 1072
Query: 255 RNKI 258
+ +
Sbjct: 1073 SDGV 1076
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + ++++ Y ++ + A+ + D+M Q +FNTL++ + K L
Sbjct: 763 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 822
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++ K PD +Y ++++G + A+ + ++M + +L+P ++ + T+I GLC
Sbjct: 823 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 882
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+AL L ++M ++P+ ++SLI LC G S A +M+ KI D
Sbjct: 883 YKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 939
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q+++ + + +I+ + R L
Sbjct: 690 RPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQN-LGIPHNHYTYSILINCFCRRSQLP 747
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL V +M + + + ++LLN +I L Q+ P+ ++N L+
Sbjct: 748 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 807
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + + +A + D M+ + QP LVT+G ++ GLC D A L M + +
Sbjct: 808 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKL 866
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P ++ ++I GLC + AL +EM
Sbjct: 867 EPGVLIYNTIIDGLCKYKHMDDALNLFKEM 896
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + + + A F E+ ++ V ++ L+N + + L
Sbjct: 291 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 350
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M +K ++P+ +Y+ L+ V + ++ +A ++F+EM++ + P +VT+ +LI GLCL
Sbjct: 351 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 410
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R+DEA ++ D+M D + +LI G C + + EM
Sbjct: 411 HDRIDEANQMF-DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 459
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R P I F ++S + + + + ++M + + +++ L+N ++
Sbjct: 689 SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPL 748
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P+ + + L++G S+R+ +A + D+M QP VTF TLI+
Sbjct: 749 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 808
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + ++ GLC G+ LA +M + K+E
Sbjct: 809 GLFLHNKASEAMALI-DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 867
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK ++ ++ ++ +V + + +I + +A ++ A +
Sbjct: 432 DVVSYNTLINGFCKAKRVEDGMKLFREMSQ-RGLVSNTVTYNTLIQGFFQAGDVDKAQEF 490
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M F + + ++N LL + G++++ +F+ M+K + D +Y ++ G
Sbjct: 491 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 550
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLK---EDMMRVYNV 223
+ ++E+AW +F + + L+P +VT+ T++ GLC + L EAL K E +M+
Sbjct: 551 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 610
Query: 224 KPDAQVF--ASLIKGLCAVG 241
D + A LIK + + G
Sbjct: 611 LSDGDITLSAELIKKMLSCG 630
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 20 KDPKL--ALQLFKN---PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+D KL A+ LF + P P+ + L L YD++I+ LG+ KM EV I
Sbjct: 165 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVIS-LGK-KM--EVLGIR 220
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ L + +V C +S AL + +M + + +L+N
Sbjct: 221 NDL-YTFNIVINCFCCCFQVSL---------ALSILGKMLKLGYEPDRVTIGSLVNGFC- 269
Query: 135 CGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +R++D +++K V PD +YN ++ ++R+ DA+ F E+ ++ ++P
Sbjct: 270 --RRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 327
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ L+ GLC R +A +L DM++ + P+ +++L+ G++ A
Sbjct: 328 VVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELF 386
Query: 251 EEMVRNKIEMD 261
EEMVR I+ D
Sbjct: 387 EEMVRMSIDPD 397
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L +A D Q+I ++ D V P + + ++ + LE A+ V
Sbjct: 1044 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 1102
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ + ++ T+ ++N ++ M GK++ DLF + K V PD +YN ++ G
Sbjct: 1103 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 1162
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E+A +F EM + P + TLI
Sbjct: 1163 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 1192
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ F G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHGFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA +FDEML + L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM+ ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 100/178 (56%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y + L ++ + M + VQ V +++ L+N + K+D L
Sbjct: 169 PSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L ++M+ + +KPD + +LI G C G+L A +++ M++ I +D
Sbjct: 289 KGDLKQAQDLIDEMI-MKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM+ + L+P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GNCKEGDLETAFEYRKRMIKE-NIRLDDVAYTALISGLCQEG 360
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ + ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANVLFDEM-LDKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL +++ K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L + M ++ +++HQ+K + R + + F ++I+ Y RA LE A+ V EM
Sbjct: 432 YSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHV-FNSLINGYVRAFKLEEAISVLREM 490
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPDACSYNILMHGCVVS 169
S + TV S+NT++N + K +R +D + +++E+ + PD +Y++L+ G
Sbjct: 491 KSKDCAPTVVSYNTIINGLC---KAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRG 547
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++ A ++ + + +RL+P L +I+GLC +VD AL++ M +V N PD
Sbjct: 548 EKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQV-NCVPDLVT 606
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++++GL G+ AL + ++ ++ D
Sbjct: 607 HNTIMEGLYKAGDCVEALKIWDRILEAGLQPD 638
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 113/211 (53%), Gaps = 6/211 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + DE ++ +++K + + P+ F ++I +A A +VF EM
Sbjct: 258 YNIMINGLCKLGKLDESMEMWNRMKKNEKS-PDLFTFSSMIHGLSKAGNFNAAEKVFQEM 316
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ V+++N +L+ + GK+++ +L+ +M K + SYN+L+ G + ++++E
Sbjct: 317 IESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVE 376
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA-- 231
A + + +R L+ T+G LI GLC +++AL++ E+ N D FA
Sbjct: 377 QAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEE---AENEGADLDTFAYS 433
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
S++ GLC G L A+ +M +N+ ++++
Sbjct: 434 SMVHGLCKKGMLEQAVELIHQMKKNRRKLNS 464
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 102/201 (50%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y L+I L + ++ +IL + +++ + + + +++ + +LE A+++ +M
Sbjct: 397 YGLLINGLCKNGYLNKALRILEEAENEGADL-DTFAYSSMVHGLCKKGMLEQAVELIHQM 455
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ FN+L+N + K++ + + M+ K +P SYN +++G + R
Sbjct: 456 KKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERF 515
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA+ EML+ L+P ++T+ LI GLC +VD AL L + +KPD Q+
Sbjct: 516 SDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCIN-KRLKPDLQMHNI 574
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+I GLC ++ +AL +M
Sbjct: 575 IIHGLCTAQKVDVALEIFTQM 595
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 109/209 (52%), Gaps = 4/209 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I + + F++ + +L + + + P+ + + +I+ ++ L A+++
Sbjct: 148 NLQTYNILIKISCKKRQFEKGKGLLTWM-FENGLNPDILSYGTLINALAKSGNLLDAVEL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
FDEMS V V +N L++ L G + ++++ + E V P +YNI+++G
Sbjct: 207 FDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLC 266
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+L+++ ++++ M K P L TF ++I+GL + A K+ ++M+ + PD
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIES-GLSPDV 325
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + +++ GL G+L+ M +N
Sbjct: 326 RTYNAMLSGLFRTGKLNKCFELWNVMSKN 354
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 55/294 (18%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL+ +K+P AL +F + +P A P PF + H+ I+ +L
Sbjct: 6 KVISPTLVLKLLKAEKNPNAALAIFDSACQHPG--YAHP--PF---VFHH--ILRRLMDP 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
K+ V +I+ L R E + + I Y + + + AL +F M F ++
Sbjct: 57 KLVVHVGRIV-DLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-------------------------------------Q 146
SFN++LNA + + R +LF
Sbjct: 116 SFNSMLNAFIESNQW-REAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTW 174
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
+ E ++PD SY L++ S L DA ++FDEM R + P ++ + LI G LR
Sbjct: 175 MFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGF---LR 231
Query: 207 VDEALKLKEDMMRVY---NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +K E R+ +V P + + +I GLC +G+L ++ M +N+
Sbjct: 232 KGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNE 285
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 96/188 (51%), Gaps = 3/188 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ II L +A+ F + L ++ + + P+ I + +I R ++ AL ++
Sbjct: 499 VVSYNTIINGLCKAERFSDAYLSLKEMLEEG-LKPDMITYSLLIDGLCRGEKVDMALNLW 557
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
+ + ++ ++ N +++ + T K+D ++F Q+ + PD ++N +M G +
Sbjct: 558 HQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKA 617
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+A K++D +L+ LQP ++++ GLC RV +A++ D + + P+A
Sbjct: 618 GDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALD-RGILPNAPT 676
Query: 230 FASLIKGL 237
+ L++ +
Sbjct: 677 WNVLVRAV 684
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +L +++II L A+ D +I Q++ VP+ + ++ +A
Sbjct: 565 LKP---DLQMHNIIIHGLCTAQKVDVALEIFTQMRQ-VNCVPDLVTHNTIMEGLYKAGDC 620
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNIL 162
AL+++D + +Q + S+N + +C ++ D + L+ +++ + P+A ++N+L
Sbjct: 621 VEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVL 680
Query: 163 MHGCV 167
+ V
Sbjct: 681 VRAVV 685
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 8/227 (3%)
Query: 41 AQPLKPFRY-----NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
A+ L FR N++ + ++I L +A E ++K VP E + +I+
Sbjct: 111 AKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKG-TVPNEWTYNVLIN 169
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP 154
+ + + A + EM + V +++T+++ K+D LF Q++E P
Sbjct: 170 GFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP 229
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +YN L+ G + +++A+++ DEM +R LQP ++ TL+ GLC ++D ALK+
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 289
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
ED + PD +++LI GLC G L A E+M N E D
Sbjct: 290 EDNSN-GDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPD 335
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 103/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + + Q++ ++ + P + + ++I + ++ AL +
Sbjct: 370 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLL 428
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+EM++ + ++NTL++ + G+ LF M+ K+ +PD +Y+ L+ G
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 488
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ A +FD+MLK+ + P +VTF TL+ G C VD+A +L E+M+ + PD
Sbjct: 489 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVY 547
Query: 229 VFASLIKGLCAVGEL 243
+ SL+ G C VG +
Sbjct: 548 TYTSLVDGFCKVGRM 562
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 38/228 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +++ L R + DE ++L +++ + + P++ + +++ + ++ AL+V
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMR-ERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++ S+ + V +++TL+ + G++D LF+ M E PD ++ LM G
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348
Query: 169 SRRLE-----------------------------------DAWKVFDEMLKRRLQPTLVT 193
RL+ DA +VF M+ R ++P +VT
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ +LI+G C+ VD AL L E+M PD + +LI GLC G
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTG 455
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+++I + +L ++K ++ + P + + VI + R ++ A ++
Sbjct: 160 NEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M + ++NTLL+ + G +D +L M E+ + PD SY+ LM G
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 278
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ A KVF++ P +V + TLI GLC R+DEA KL E MR + +PD
Sbjct: 279 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEK-MRENSCEPDVV 337
Query: 229 VFASLIKGLC 238
F +L+ GLC
Sbjct: 338 TFTALMDGLC 347
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++ L + E QQ+L ++ D P I + ++I + + A +V
Sbjct: 335 DVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQEV 393
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
F M ++ V ++N+L++ +D L + M PD +YN L+ G
Sbjct: 394 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 453
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +A ++F +M + P ++T+ LI G C R+D A L +DM++ V PD
Sbjct: 454 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK-QAVLPDVV 512
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F++L++G C G + A EEMV + D
Sbjct: 513 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 545
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 110/231 (47%), Gaps = 35/231 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L ++ D+ ++L +++ ++ VP+ I+ VI +AR AL
Sbjct: 58 NVFTYAVVIQGLCKSGDLDKACELLEEMR-ESGPVPDAAIYNFVIHALCKARNTAKALDY 116
Query: 110 FDEM-----------------------------SSFNVQRTVK---SFNTLLNAMLTCGK 137
F M + + TV ++N L+N K
Sbjct: 117 FRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176
Query: 138 IDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+ R L + M E ++P+ +Y+ ++HG +++ A+K+F +M++ P LVT+ T
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT 236
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
L+ GLC +DEA +L D MR ++PD + +L+ GLC G++ +AL
Sbjct: 237 LLSGLCRNGLMDEAYELL-DEMRERGLQPDKFSYDTLMAGLCKTGKIDMAL 286
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + + D + + + V+P+ + F ++ Y A L++ A ++
Sbjct: 475 DVITYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERL 533
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG 165
+EM + + V ++ +L++ K+ RM + +++++ P+ +Y L+
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFC---KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDA 590
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + A+++ +EM+ +QP ++T+ +LI G C ++EA K+ E + R N K
Sbjct: 591 FCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKA 650
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
D + ++ GLC G +S AL
Sbjct: 651 DMFAYRVMMDGLCRTGRMSAAL 672
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 44/274 (16%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
DP AL+ F A + F +N+ Y+ + L RA+ DE IL
Sbjct: 3 DPDAALRFFH---------WASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKN-GWP 52
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEM--------------------------- 113
+ P + VI ++ L+ A ++ +EM
Sbjct: 53 PGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAK 112
Query: 114 -----SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCV 167
S ++ V ++ +++ + ++ T F M+K + P+ +YN+L++G
Sbjct: 113 ALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFC 172
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ A+ + EM + L P +VT+ T+I+G C + +VD A KL M+ P+
Sbjct: 173 KVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NGCMPNL 231
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ GLC G + A +EM ++ D
Sbjct: 232 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPD 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I D ++ ++ T +P+ I + +I + A ++
Sbjct: 405 NVVTYNSLIHGFCMTNGVDSALLLMEEMTA-TGCLPDIITYNTLIDGLCKTGRAPEANRL 463
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F +M + V +++ L+ +ID LF ++++ V PD +++ L+ G
Sbjct: 464 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++DA ++ +EM+ P + T+ +L+ G C R+ EA ++ + M + +P+
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK-RGCQPNVV 582
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +LI C G+ ++A EEMV N ++
Sbjct: 583 TYTALIDAFCRAGKPTVAYRLLEEMVGNGVQ 613
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + RA A ++ +EM VQ V ++ +L+ G ++ +
Sbjct: 579 PNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKI 638
Query: 145 FQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ +E+ D +Y ++M G + R+ A ++ + + + P + LI GLC
Sbjct: 639 LERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLC 698
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +A+++ E+M +P+A+ + ++I+ L G A +E++ NK
Sbjct: 699 QGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLGNK 753
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + R + A VFD ++ + ++ +V S+NTL+N + G +D
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M V PD +Y++L++G +++DA ++FDEML + L P VTF TLI G C
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
RVD AL++ + M+ ++ PD + +LI GLC G+L A +EM ++ D
Sbjct: 241 KNGRVDLALEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 298
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++FDEM + +F TL++ G++
Sbjct: 186 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 245
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + + PD +YN L++G L+ A + DEM + L+P +T+ L
Sbjct: 246 DLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTAL 305
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C E +D A + ++ M++ N++ D + +LI GLC G A EM+
Sbjct: 306 IDGCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 364
Query: 258 IEMDA 262
++ DA
Sbjct: 365 LKPDA 369
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 102/205 (49%), Gaps = 6/205 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 186 HASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCK 241
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ AL+++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 242 NGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 301
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 302 YTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 361
Query: 219 RVYNVKPDAQVFASLIKGLCAVGEL 243
V +KPDA+ + +I C G++
Sbjct: 362 SV-GLKPDARTYTMIINEFCKKGDV 385
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
+I+E +NILMH R + A VFD + K L+P++V++ TL+ G
Sbjct: 114 EILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLG 173
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+DE +LK M V+PD ++ LI GLC ++ A +EM+
Sbjct: 174 DLDEGFRLKS-AMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 221
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 9/211 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R N + ++ +I K K D+ ++ + ++ + V P + +I YG+ +
Sbjct: 417 LRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA-EKGVTPSVETYNTLIDGYGKLCTFDRC 475
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHG 165
Q+ ++M V+ V S+ +L+N + GKI + L ++ + V P+A YN+L+ G
Sbjct: 476 FQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDG 535
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV-- 223
+ +++DA + FDEM++ + PTLVT+ LI GLC + ++ EA ED +
Sbjct: 536 SCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEA----EDFLTQITSSG 591
Query: 224 -KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + SLI G G +S LG E M
Sbjct: 592 HSPDVITYNSLISGYANAGNVSKCLGLYETM 622
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 117/215 (54%), Gaps = 3/215 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N +++ L + ++ ++IL + + +V +E+I+ ++ Y R +
Sbjct: 345 KGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENG-LVADEVIYNTFVNGYCRIGDMN 403
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A+ + M SF ++ +FN+L++ ++D+ + + M EK V+P +YN L+
Sbjct: 404 KAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLI 463
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + +++ ++M + ++P +V++G+LI LC + ++ EA + DM+ V
Sbjct: 464 DGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMI-CRGV 522
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+AQV+ LI G C VG++ AL F +EM+R++I
Sbjct: 523 LPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEI 557
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 102/209 (48%), Gaps = 8/209 (3%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L+ Y+++I L + E + L Q+ P+ I + ++IS Y A + L ++
Sbjct: 561 LVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHS-PDVITYNSLISGYANAGNVSKCLGLY 619
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGK--IDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ M + ++ TV++++ L++ C K I+ + L+ ++++ + PD YN ++H
Sbjct: 620 ETMKNLGIKPTVRTYHPLISG---CSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYA 676
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ A+ + ML + + P +T+ +LI G E ++ L + M+ + P A
Sbjct: 677 EIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNN-MKAKELAPKA 735
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ L+KG C + + S A + EMV N
Sbjct: 736 DTYDILVKGHCDLKDFSGAYVWYREMVEN 764
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V P+ YN+L+ G +R+ DA K+FDEM L ++VT+ TLI G C +D A
Sbjct: 207 VRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAF 266
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K++E M+ +V P+ F SL+ GLC + ++ A +EM N D
Sbjct: 267 KMRE-RMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDG 316
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 37/243 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKH-------------------DTRVVPEEIIFCNVI 94
Y+ +I G+ FD QIL Q++ D +++ EI+ ++I
Sbjct: 459 YNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMI 518
Query: 95 S-------------FYGRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
G + ++ AL+ FDEM + T+ ++N L++ + GK+
Sbjct: 519 CRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLT 578
Query: 140 RMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D L QI SPD +YN L+ G + + +++ M ++PT+ T+ LI
Sbjct: 579 EAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLI 638
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
G C + ++ KL +M+++ N+ PD V+ ++I +G A + M+ I
Sbjct: 639 SG-CSKEGIELVEKLYNEMLQM-NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGI 696
Query: 259 EMD 261
D
Sbjct: 697 HPD 699
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 103/207 (49%), Gaps = 9/207 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N+ Y+++I L R K + +++ ++ + +V + + +I Y + L+
Sbjct: 205 RGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEM-CNINLVGSIVTYNTLIDGYCKVGELD 263
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A ++ + M +V + +FN+LL+ + K+ L + ME PD +Y+IL
Sbjct: 264 AAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILF 323
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY-- 221
G + A +++++ ++ ++ T L+ GLC + +V++A E++++ +
Sbjct: 324 DGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKA----EEILKKFTE 379
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLAL 247
+ D ++ + + G C +G+++ A+
Sbjct: 380 NGLVADEVIYNTFVNGYCRIGDMNKAI 406
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ DLF +I D Y + V + L+ + D M KR ++P + + LI
Sbjct: 159 KVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLI 218
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E R+ +A K+ ++M + N+ + +LI G C VGEL A +E M
Sbjct: 219 GGLCREKRIRDAEKMFDEMCNI-NLVGSIVTYNTLIDGYCKVGELDAAFKMRERM 272
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+++E+ Q+ ++P+ +++ +I Y + A + M + +
Sbjct: 651 KLYNEMLQM--------NLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMT 702
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N+L+ GK+ + DL M+ K ++P A +Y+IL+ G + A+ + EM+
Sbjct: 703 YNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMV 762
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ P L GL E R+ E + +M
Sbjct: 763 ENNFLPNASICNELTAGLEQEGRLQEVQVICSEM 796
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 202
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 203 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 261
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L+ A G +EM ++ D
Sbjct: 262 PDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPD 298
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 188 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 247
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L A + DEM + L+P T+ TLI
Sbjct: 248 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLID 307
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + ++I GLC G
Sbjct: 308 GCCKEGDLDAAFEHRKRMIQE-NIRLDDVAYTAIISGLCQEG 348
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 187 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 242
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G +++ L M K + PD +Y
Sbjct: 243 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTY 302
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + +I GLC E R +A K+ +M+
Sbjct: 303 TTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLS 362
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 363 V-GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRN 398
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
++++I L + + + ++ ++ K RV P + +I Y + LL AL +++E
Sbjct: 275 FNVLINGLSKKGELQQAKGLIQEMAKAGLRVSP--YTYNPLICGYCKKGLLVEALALWEE 332
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
M + V TV S NT++ GK+ D L +++K + PD SYN L++G
Sbjct: 333 MVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGN 392
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ +A+ + DE+ R L +VT+ TLI GLC ++ ALKLKEDM+ + PD +
Sbjct: 393 IGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMIN-RGIHPDVVTYT 451
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
L+ G C +G + +A F +EM+
Sbjct: 452 VLVNGACKLGNMLMAKEFFDEMLH 475
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P E+ F +I+ + L+ A + EM+ ++ + ++N L+ G + L
Sbjct: 270 PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALAL 329
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M + VSP S+N +M+G ++ DA + +MLK+ L P ++++ TLIYG C
Sbjct: 330 WEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCR 389
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ EA L D +R N+ + + +LI GLC +G+L AL KE+M+ I D
Sbjct: 390 LGNIGEAFILL-DELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPD 446
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
LL AL+V+ M + ++ TV ++NT+L++ G++ R DL ++ E+ P ++N
Sbjct: 217 LLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFN 276
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+L++G L+ A + EM K L+ + T+ LI G C + + EAL L E+M+
Sbjct: 277 VLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMV-T 335
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA 246
V P +++ G C G++S A
Sbjct: 336 RGVSPTVASHNTIMYGFCKEGKMSDA 361
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 5/205 (2%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNV 118
+G K+ D + Q + T+ P ++I NV G +L LE A ++ +M
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVF-VNGLCKLGNLEEAGELLQKMIRDGH 548
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
++ + ++A + G + ++F ++ + +P +Y +L+H ++ RL+ A
Sbjct: 549 VPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMA 608
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
F EM ++ + P ++T+ LI G C ++D+A K +M + P+ + LI
Sbjct: 609 YFLEMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQE-KGIFPNKYTYTILINEN 667
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C +G+ AL +M+ +I D+
Sbjct: 668 CNMGKWQEALRLYAQMLGKRIRPDS 692
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 39/216 (18%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
KM D QQ+ LK + ++P+ I + +I + R + A + DE+ N+ +
Sbjct: 356 GKMSDARQQLSDMLKKN--LMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIV 413
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC---------------- 166
++NTL++ + G ++ L + ++ + + PD +Y +L++G
Sbjct: 414 TYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM 473
Query: 167 ----------------VVSRRLEDAWKVF---DEMLKRRLQPTLVTFGTLIYGLCLELRV 207
V +L D K F +EML + P ++T+ + GLC +
Sbjct: 474 LHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNL 533
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+EA +L + M+R +V PD + S + G L
Sbjct: 534 EEAGELLQKMIRDGHV-PDHVTYTSFMHAHMENGHL 568
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y++ + L + +E ++L ++ D V P+ + + + + + L
Sbjct: 511 KGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV-PDHVTYTSFMHAHMENGHLR 569
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILM 163
++F +M S TV ++ L++A G++D M ++ EK V P+ +YN+L+
Sbjct: 570 EGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLI 629
Query: 164 HGCVVSRRLEDAWKVFDEM-----------------------------------LKRRLQ 188
+G R+++ A K F EM L +R++
Sbjct: 630 NGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIR 689
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
P T G L+ L + +V +A++ E ++
Sbjct: 690 PDSCTHGALLKKLDKDYKV-QAVQFIESLI 718
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 11/172 (6%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
E FC ++ L++ A V + + SF + V +L G ++ L
Sbjct: 138 SEYAFCAILQILVDNCLMKSAYWVMERIISFEMYGIVD--------VLIGGYLNYQCLLV 189
Query: 146 --QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++M PD + N ++ L A +V+ M + ++PT+ T+ T+++ C
Sbjct: 190 FEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCK 249
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V AL L M P F LI GL GEL A G +EM +
Sbjct: 250 GGEVQRALDLVPKMQE-RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAK 300
>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
Length = 847
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 113/215 (52%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+++I L + F++ + ++ + LK +V + +I Y LL AL
Sbjct: 574 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV--SAYTYNPLIYGYFNKGLLAEALS 631
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ +EM TV ++N+ + + G++ D M L ++ + PD SYN L++G
Sbjct: 632 LQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYC 691
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L A+ +FDE+ L PT+VT+ TL+ GLC + ++ A +LK +M+ + PD
Sbjct: 692 RLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN-EGIAPDI 750
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ L+ G C +G LS+A F +EM+ +E+D+
Sbjct: 751 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS 785
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEM 113
DL+I + M ++ + ++ +R+ P+ + CN I R + L+ A++V+ M
Sbjct: 474 DLLIWVYSKKSMVEQCLSVFDKMIK-SRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTM 531
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
F ++ T+ ++NTLL++ GK+ + DL M++ +P+ +YN+L++G
Sbjct: 532 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 591
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + EMLK L+ + T+ LIYG + + EAL L+E+M+ + P + S
Sbjct: 592 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMV-LKGASPTVATYNS 650
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
I GLC +G +S A+ +M+ N +
Sbjct: 651 FIYGLCKLGRMSDAMQQLSDMLANNL 676
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 14/202 (6%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D +QQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 648 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 701
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCV 167
+FDE+ S + T+ ++NTLL+ + G+++ L +++ + ++PD +Y IL++G
Sbjct: 702 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 761
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVK 224
L A + FDEML L+ + T I G EL++ + A L+E+M+
Sbjct: 762 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVG---ELKLGDTSRAFSLQEEML-AKGFP 817
Query: 225 PDAQVFASLIKGLCAVGELSLA 246
PD ++ ++ GLC +G L A
Sbjct: 818 PDLIIYNVVVDGLCKLGNLEEA 839
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--------------TVKSFNTLLNA 131
E +FC ++ + L+ A V + + + N+ R +VK + L+
Sbjct: 420 SEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWV 479
Query: 132 MLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+++ +F ++++ +SPD + N ++ + A +V+ M + ++PT
Sbjct: 480 YSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPT 539
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ TL+ C +V + L L +M R P+ + LI GL GE A G
Sbjct: 540 IVTYNTLLDSYCKGGKVQQGLDLLSEMQR-RGCAPNDVTYNVLINGLSKKGEFEQAKGLI 598
Query: 251 EEMVRNKIEMDA 262
EM++ +++ A
Sbjct: 599 GEMLKTGLKVSA 610
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S + + + +TLL+ + GK+ ++F++M+K V PD
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DS 571
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + P+ F +LI G C G + L EM R I +A
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +FNTLL+ + ++
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + AL L M V ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML R + P +T+ ++I G C + R+D A + +M P+ F +LI G C
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYC 406
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + EM + D
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADT 430
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+ IL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++ L++G + R++D ++F EM +R + +T+ TLI G
Sbjct: 578 -----------SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALNLFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G +L + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 EELYDEMLPRGI 356
>gi|449434360|ref|XP_004134964.1| PREDICTED: uncharacterized protein LOC101207147 [Cucumis sativus]
Length = 2802
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 114/248 (45%), Gaps = 46/248 (18%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK--HDTRVVPEEIIFCNVIS 95
NTE+Q FR+ YD + L K F ++ I+ K D +V E +I
Sbjct: 1301 NTESQR---FRHQKGTYDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKV---EGFATRLIK 1354
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-- 153
YG+A + HA ++FDE+ N +RTVKSFN+LL + + ++D++ +F+ + + VS
Sbjct: 1355 LYGKAGMFSHARKLFDELPELNCERTVKSFNSLLASCVKSKELDQVEKIFREVPQEVSIK 1414
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-------------- 199
D SYNI+++ L+ A F +M K ++P LVTF TL+
Sbjct: 1415 ADVISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLTALYRKGQFFDGERV 1474
Query: 200 ---------------------GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
G+ LE R+ + ++L M +KPD + LIKG C
Sbjct: 1475 WATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEE-KEIKPDVYSYNILIKGFC 1533
Query: 239 AVGELSLA 246
G+L A
Sbjct: 1534 QDGDLEEA 1541
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 41/256 (16%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLL 103
K FR YD + L K F +++I+ Q K+D + EE +I YG+A +
Sbjct: 925 KQFRRKNDTYDSTVRFLAVRKKFSMIEEIIEAQKKYDE--IKEEGFVIRLIRLYGKAGMF 982
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNI 161
A ++FDE+ +RTV+SFN LL + + + D++ +F+ + E + D SYNI
Sbjct: 983 SQARKLFDELPELKCERTVRSFNALLVSCVKSKEFDQVEKIFREVPQELSIEADVSSYNI 1042
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------------- 199
+++ + A F+ M K ++P LVTF TL+
Sbjct: 1043 VINAYCEMDDFDKAILFFNHMEKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKN 1102
Query: 200 -------------GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
G+ L+ R+ + ++L M +KPD ++ +LI C G+L A
Sbjct: 1103 IAPDLVSYNARLRGMVLDKRIQDGIELLAKMEE-KEIKPDVHIYNTLITSFCKDGDLEEA 1161
Query: 247 LGFKEEMVRNKIEMDA 262
+ ++ ++++ +A
Sbjct: 1162 KKWYYKLKESEVDPNA 1177
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 10/200 (5%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+K FD+++ I ++ + + + + + VI+ Y + L+ A+ F++M + +
Sbjct: 1811 SKEFDQLETIFREVPQEVSIEADVVSYNIVINAYCKMGALDKAILFFNDMEKNGTEPNLV 1870
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNTLL A+ + G+ ++ ME K ++PD SYN + V+ +R++D ++ EM
Sbjct: 1871 TFNTLLTALYSKGQFLDGESMWARMENKNIAPDLISYNARLQRMVLEKRIQDGIQLLAEM 1930
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQVFASLIKGLC 238
++ ++P + ++ LI G C + +++A KLK++ V P+A ++ +L+ C
Sbjct: 1931 EEKAIKPNVDSYYILIEGFCEDGDLEQAKQWYYKLKDN-----EVNPNASIYRTLLPLYC 1985
Query: 239 AVGELSLALGFKEEMVRNKI 258
G+ L +E N +
Sbjct: 1986 EKGDFDSGLRLCKESFDNGL 2005
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 105/209 (50%), Gaps = 10/209 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ ++K FD+V++I ++ + + + + VI+ Y + A+ F+ M
Sbjct: 1004 FNALLVSCVKSKEFDQVEKIFREVPQELSIEADVSSYNIVINAYCEMDDFDKAILFFNHM 1063
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + +FNTLL A+ G+ ++ ME K ++PD SYN + G V+ +R+
Sbjct: 1064 EKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKRI 1123
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQ 228
+D ++ +M ++ ++P + + TLI C + ++EA KLKE V P+A
Sbjct: 1124 QDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLKES-----EVDPNAT 1178
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +L+ LC G+ L +E + +
Sbjct: 1179 TYRTLLPLLCEKGDFDSGLQLCKEAINKR 1207
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 100/197 (50%), Gaps = 10/197 (5%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
++K D+V++I ++ + + + I + VI+ + L+ A+ F +M ++ +
Sbjct: 1393 KSKELDQVEKIFREVPQEVSIKADVISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNL 1452
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+FNTLL A+ G+ ++ ME K ++PD SYN + G V+ +R++D ++ +
Sbjct: 1453 VTFNTLLTALYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAK 1512
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQVFASLIKGL 237
M ++ ++P + ++ LI G C + ++EA KLKE V P A + L+ L
Sbjct: 1513 MEEKEIKPDVYSYNILIKGFCQDGDLEEAKKWYYKLKES-----EVDPIATTYRILLPLL 1567
Query: 238 CAVGELSLALGFKEEMV 254
C G+ L +E +
Sbjct: 1568 CEQGDFDSGLQLCKEAI 1584
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 62/281 (22%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISF 96
N+E++ FR Y + L K F ++ I+ Q K++ + EE +I
Sbjct: 1700 NSESEK---FRRKNDTYFSTVRLLAIHKKFSMIEDIIEAQKKYEE--IKEEGFAIRLIKL 1754
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-------- 148
YG+A + HA ++FDE+ N +RTVKSFN LL + + +++ +F+ +
Sbjct: 1755 YGKAGMFSHARKLFDELPELNCERTVKSFNALLTSCANSKEFEQLETMFREVPCANSKEF 1814
Query: 149 ------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
E + D SYNI+++ L+ A F++M K +P LVTF T
Sbjct: 1815 DQLETIFREVPQEVSIEADVVSYNIVINAYCKMGALDKAILFFNDMEKNGTEPNLVTFNT 1874
Query: 197 LIYGL-----------------------------------CLELRVDEALKLKEDMMRVY 221
L+ L LE R+ + ++L +M
Sbjct: 1875 LLTALYSKGQFLDGESMWARMENKNIAPDLISYNARLQRMVLEKRIQDGIQLLAEMEE-K 1933
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+KP+ + LI+G C G+L A + ++ N++ +A
Sbjct: 1934 AIKPNVDSYYILIEGFCEDGDLEQAKQWYYKLKDNEVNPNA 1974
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S + + + +TLL+ + GK+ ++F++M+K V PD
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DS 571
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + P+ F +LI G C G + L EM R I +A
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P + FC ++ R + + ++ +M ++ + SFN L+ +C K+
Sbjct: 73 SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F +I + + PD ++ L+HG V R+ +A F +M + +P +VTF TL+
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E R+ EA+ L + MM ++P + +++ G+C G+ AL +M
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +F TLL+ + ++
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D F Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + AL L M V ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML R + P +T+ ++I G C + R+D A + +M P+ F +LI G C
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYC 406
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + EM + D
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADT 430
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+NIL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++ L++G + R++D ++F EM +R + +T+ TLI G
Sbjct: 578 -----------SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALDFFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G +L + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 EELYDEMLPRGI 356
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++II + + ++L +K + + + + N+IS + R LEHA +
Sbjct: 446 NVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKL-DTWTYANLISGFSRGGKLEHAFSL 504
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+EM + V ++N ++N LT K+D LF +++E P + +YN+++ G
Sbjct: 505 FNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSK 564
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R+ +A +M+K+ L P ++T+ + I GLC R A K+ +M + + P+
Sbjct: 565 TNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKK-RDYFPNLC 623
Query: 229 VFASLIKGLCAVGE 242
++SLI GLC G+
Sbjct: 624 TYSSLIDGLCQEGQ 637
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + I L A E ++L ++K P + +IS R E A+ V+ +M
Sbjct: 310 YTIPIVSLCDAGRSCEAVKLLGKMK-KRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
+ + T +++ L+N + G+ + +F+ M + S P+ +YN+++ G +
Sbjct: 369 LADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYI 428
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A +FD+MLK P ++T+ +I+ + ++ A++L E MM+ +K D +A+
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLE-MMKGNGLKLDTWTYAN 487
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
LI G G+L A EMV + I
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGIS 514
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I+ LE A+ + +EM ++ TV ++ + ++ G+ L
Sbjct: 270 PNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKL 329
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M+K P+ +Y L+ G + E A V+ +ML L PT VT+ LI L +
Sbjct: 330 LGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYV 389
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E R + AL + E M+ ++ P+ + + +IKG C++G + A ++M++
Sbjct: 390 EGRFETALTIFEWMLS-HDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLK 440
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 3/221 (1%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
+E F Y L + ++ +LG+ M D + + ++ ++ + P F +I
Sbjct: 155 SEINTTYDFGYTLYSFSTLLIQLGKFDM-DGLGRDVYIEMLNSGIRPNLFTFNAMIKILC 213
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDAC 157
++ A + + + ++ +L+ G +D ++F M K P++
Sbjct: 214 NKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSV 273
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+ L++G RLE+A + +EM+ + ++PT+ + I LC R EA+KL M
Sbjct: 274 TYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKM 333
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ P+ Q + +LI GL G+ +A+G +M+ + +
Sbjct: 334 KK-RGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGL 373
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLN 130
+L++L D VP + + +I ++ +QV E+ ++++ T+ SF+TLL
Sbjct: 116 SMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLL- 174
Query: 131 AMLTCGKIDR---MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
+ GK D D++ +++ + P+ ++N ++ ++++A + +
Sbjct: 175 --IQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYG 232
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P T+ +LI G C +D A ++ + M++ P++ +++LI GLC+ G L A
Sbjct: 233 ACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKD-GCDPNSVTYSALINGLCSEGRLEEA 291
Query: 247 LGFKEEMVRNKIE 259
+ EEM+ IE
Sbjct: 292 MDMLEEMIDKGIE 304
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 86/185 (46%), Gaps = 5/185 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I+ + E + ++ ++P I + + I + A ++F EM
Sbjct: 555 YNMMISGFSKTNRISEAENFCGKMVKQG-LLPNVITYTSFIDGLCKNGRTSLAFKIFHEM 613
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + ++++L++ + G+ + D ++++ P+ +Y L+ G R
Sbjct: 614 KKRDYFPNLCTYSSLIDGLCQEGQAE---DAERLLDDGCEPNVDTYTTLVRGLCGKGRCY 670
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A ++ + M K+ LQP+ + L+ G C L V+ ALK+ + M+ +P + +L
Sbjct: 671 EADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTT-GFQPCLSDYKAL 729
Query: 234 IKGLC 238
I LC
Sbjct: 730 ICALC 734
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ L + + D + + ++ D ++P+ I ++S Y R L+ A +E+
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEV 170
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N LLN ++ +D LF + +E Y PD S+NIL+ G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK----LKEDMMRVYNVKPDAQ 228
+ A++ F M P +V++ TLI G C RV+E K LKEDM+ + V PD
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFC---RVNEISKGHDLLKEDML-IKGVSPDVI 286
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ S+I G C +G++ A +EMV + I+
Sbjct: 287 TYTSIISGYCKLGDMKAASELFDEMVSSGIK 317
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 8/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R + +L + V P+ I + ++IS Y + ++ A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG 165
FDEM S ++ +FN L++ GK+ M + EK + PD ++ L+ G
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDGF---GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ K+++EM R L P + T+ LI LC E R+ EA ++ V P
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH-LKSSEVVP 423
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +I G C G++ A EM K D
Sbjct: 424 KPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPD 459
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ + F ++I Y R + L++++EM N+ V ++ L+NA+ +I +
Sbjct: 352 LPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARN 411
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ ++ V P YN ++ G + ++++A + EM +++ +P +TF LI G C
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNC 471
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ R+ EA+ M+ + N PD SLI L G
Sbjct: 472 MKGRMVEAISTFYKMIEI-NCVPDEITINSLISCLLKAG 509
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 98/177 (55%), Gaps = 3/177 (1%)
Query: 87 EIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+I+ CN+ I + + + ++ AL++F EM +Q ++ TL+N + + G + +LF
Sbjct: 469 DIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELF 528
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ + P+ YNI++H L+ A K+F M+++ + P +VT+ TLIY L
Sbjct: 529 EQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKN 588
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R EAL L +D MR V+PD+ F LI GL G +LA E M+ N I +D
Sbjct: 589 SRAMEALDLFKD-MRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENGIILD 644
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-- 151
IS ++ +E ++ +M F + + N ++ + K +R+ D Q++EK
Sbjct: 232 ISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLC---KQNRLHDALQMVEKMRG 288
Query: 152 --VSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
PD +Y ++ GC+ + +R +A +++EM+K L+P +V G LI+GLC +V+
Sbjct: 289 KGTIPDVVTYTTVV-GCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVE 347
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
EA +L M+ + N++ ++ +LI G G + A M N E
Sbjct: 348 EAFELASRMLSL-NIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCE 397
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+++ ++A+ +I+ + +L M+++ SPD + NI + RL DA ++ ++M
Sbjct: 227 TYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKM 286
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ P +VT+ T++ LC R EA+ L E+M+++ +KPD +LI GLC +
Sbjct: 287 RGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKM-GLKPDVVACGALIFGLCKNSK 345
Query: 243 LSLALGFKEEMVRNKIEM 260
+ A M+ IE+
Sbjct: 346 VEEAFELASRMLSLNIEL 363
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 101/247 (40%), Gaps = 40/247 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQ 108
+++ Y ++ L K F E + ++ + +++ C + F + +E A +
Sbjct: 294 DVVTYTTVVGCLCNNKRFSEAVGLWEEMVK--MGLKPDVVACGALIFGLCKNSKVEEAFE 351
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM-HGC 166
+ M S N++ +V +N L++ G ID+ + M P +YNIL+ H C
Sbjct: 352 LASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYC 411
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV------ 220
+ +E A + +M + P ++ L+ GLC ++D+A D M V
Sbjct: 412 TIG-MMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDI 470
Query: 221 ----------------------------YNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ DA + +LI GL +VG +LA E+
Sbjct: 471 VSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQ 530
Query: 253 MVRNKIE 259
M++ +I+
Sbjct: 531 MLKAQID 537
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 28/262 (10%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF + ++R D + A++ + P +Q + +LL D F
Sbjct: 87 PFVVNLVVRGLSDSETAVRFYWWAESRPGFDHSQFAIAYIVSLLFVD---------GNFA 137
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+ + L ++ V ++ ++S Y RA + + FDEM + +N
Sbjct: 138 LLSEFLGTVRSQG-VALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRY 196
Query: 129 LNAML-TCGKIDRMTDLFQIMEKY----VSPDAC----SYNILMHGCVVSRRLEDAWKVF 179
+ ++ C F ++EKY +S C +Y+ + S R+E ++
Sbjct: 197 IGVLIKNC--------CFDLVEKYYGMALSKGLCLTPFTYSRWISALCQSNRIELVEELL 248
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+M + P + I LC + R+ +AL++ E M R PD + +++ LC
Sbjct: 249 ADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKM-RGKGTIPDVVTYTTVVGCLCN 307
Query: 240 VGELSLALGFKEEMVRNKIEMD 261
S A+G EEMV+ ++ D
Sbjct: 308 NKRFSEAVGLWEEMVKMGLKPD 329
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 10/211 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ L + + D + + ++ D ++P+ I ++S Y R L+ A +E+
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDG-ILPDSSILELLVSSYARMGKLDSAKNFLNEV 170
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N LLN ++ +D LF + +E Y PD S+NIL+ G +
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK----LKEDMMRVYNVKPDAQ 228
+ A++ F M P +V++ TLI G C RV+E K LKEDM+ + V PD
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFC---RVNEISKGHDLLKEDML-IKGVSPDVI 286
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ S+I G C +G++ A +EMV + I+
Sbjct: 287 TYTSIISGYCKLGDMKAASELFDEMVSSGIK 317
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 8/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R + +L + V P+ I + ++IS Y + ++ A ++
Sbjct: 248 DIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASEL 307
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG 165
FDEM S ++ +FN L++ GK+ M + EK + PD ++ L+ G
Sbjct: 308 FDEMVSSGIKPNDFTFNVLIDGF---GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDG 364
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ K+++EM R L P + T+ LI LC E R+ EA ++ V P
Sbjct: 365 YCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRH-LKSSEVVP 423
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +I G C G++ A EM K D
Sbjct: 424 KPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPD 459
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ + F ++I Y R + L++++EM N+ V ++ L+NA+ +I +
Sbjct: 352 LPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARN 411
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ ++ V P YN ++ G + ++++A + EM +++ +P +TF LI G C
Sbjct: 412 FLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNC 471
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ R+ EA+ M+ + N PD SLI L G
Sbjct: 472 MKGRMVEAISTFYKMIEI-NCVPDEITINSLISCLLKAG 509
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S + + + +TLL+ + GK+ ++F++M+K V PD
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DS 571
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + P+ F +LI G C G + L EM R I +A
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +FNTLL+ + ++
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + AL L M V ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML R + P +T+ ++I G C + R+D A + +M P+ F +LI G C
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYC 406
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + EM + D
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADT 430
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+ IL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++ L++G + R++D ++F EM +R + +T+ TLI G
Sbjct: 578 -----------SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALNLFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G +L + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 EELYDEMLPRGI 356
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 95/217 (43%), Gaps = 35/217 (16%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D V PE F ++ R+ L A +FDEM V TV +FNTL++ M ++
Sbjct: 237 DAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLN 296
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L +M K V+PD +Y M G + R++DA ++F+EM +R + P V F TLI
Sbjct: 297 SANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLI 356
Query: 199 YGLCLELRVDEALKLKEDM----------------------------------MRVYNVK 224
C E V L+L +M MR +K
Sbjct: 357 DAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLK 416
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI G C GEL +A+ K+EM + +D
Sbjct: 417 PDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALD 453
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ V P+A +N+LM + S +L A +FDEML+R + PT+VTF TL+ G+C
Sbjct: 233 LQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKA 292
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ A L+ +M V PD + + ++GLC G + A+ EEM
Sbjct: 293 SDLNSANALR-GLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L L V P+ + + +A ++ A+++F+EM V F TL++A
Sbjct: 301 LRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHC 360
Query: 134 TCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G + +L + M + + D +YN L +G R L+ A + +EM L+P V
Sbjct: 361 KEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKV 420
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
T+ TLI G C E +D A+++K++M V D + +LI GL G
Sbjct: 421 TYTTLIDGFCKEGELDMAMEMKQEMSD-EGVALDEVTYTTLISGLSKSG 468
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + +L+ Y+ + L R + I+ +++++ + P+++ + +I + + L+
Sbjct: 378 RGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG-LKPDKVTYTTLIDGFCKEGELD 436
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILM 163
A+++ EMS V ++ TL++ + G+ +D L ++ME + PD +Y +++
Sbjct: 437 MAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVI 496
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ ++ +K+ EM + +P +VT+ ++ G C+ ++ A L M+ + V
Sbjct: 497 DAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNI-GV 555
Query: 224 KPDAQVFASLIKGLCAVGEL 243
PD + L+ G C G++
Sbjct: 556 CPDDITYNILLDGHCKHGKV 575
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S + + + +TLL+ + GK+ ++F++M+K V PD
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DS 571
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + P+ F +LI G C G + L EM R I +A
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P + FC ++ R + + ++ +M ++ + SFN L+ +C K+
Sbjct: 73 SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F +I + + PD ++ L+HG V R+ +A +F +M + +P +VTF TL+
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E R+ EA+ L + MM ++P + +++ G+C G+ AL +M
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +F TLL+ + ++
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + AL L M V ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 4/204 (1%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML R + P +T+ ++I G C + R+D A + +M P+ F +LI G C
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYC 406
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + EM + D
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADT 430
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+NIL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNL 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++ L++G + R++D ++F EM +R + +T+ TLI G
Sbjct: 578 -----------SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALNLFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G +L + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 EELYDEMLPRGI 356
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 110/203 (54%), Gaps = 2/203 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +L ++L+I +AK D ++L ++ + VP F +I+ +A +
Sbjct: 178 KGFTPTVLMFNLVINGFCKAKDLDSAYKLL-EVMIEKGCVPNVFTFTILITGLCKANRVG 236
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A Q+ ++M + V +++T++N + G++D +LFQ+ME+ P+ ++NIL+
Sbjct: 237 EAQQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 296
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++R+E+A +++ M + P ++T+ +LI GLC +VDEA +L + +
Sbjct: 297 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 356
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
+A +++L G A+G ++ A
Sbjct: 357 AANAVTYSTLFHGYAALGRMADA 379
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L +A FDE Q +L ++ P+ + F +I + E A +V
Sbjct: 77 DVMTYTALVHALCKAGKFDEAQGMLREMIARG-CAPDTVTFSTLIDGLCKFGSEEQAFRV 135
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM----TDLFQIMEKYVSPDACSYNILMHG 165
+++ + + +F T++ + C K + + L ++ K +P +N++++G
Sbjct: 136 LEDVIQRGMGNSDAAFETIIQRL--CNKYNSVELASKVLGVVIAKGFTPTVLMFNLVING 193
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ L+ A+K+ + M+++ P + TF LI GLC RV EA +L E M+ P
Sbjct: 194 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV-TGGCSP 252
Query: 226 DAQVFASLIKGLCAVGEL 243
+ ++++I GLC G++
Sbjct: 253 NVVTYSTVINGLCKQGQV 270
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + +I + A L+ A+Q+ +EM S + TL+ + G++ +
Sbjct: 6 MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K +PD +Y L+H + + ++A + EM+ R P VTF TLI GLC
Sbjct: 66 HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
++A ++ ED+++ DA F ++I+ LC
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDA-AFETIIQRLC 159
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N++ Y +I L + D+ ++ ++ R P ++ N+ I +A+ +E A Q
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMER--RNCPPNVVTHNILIDGLCKAKRIEEARQ 310
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSP-DACSYNILMHGC 166
++ M + ++N+L++ + ++D LFQ I E VS +A +Y+ L HG
Sbjct: 311 LYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 370
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
R+ DA ++F ++ + P L T+ +LI C
Sbjct: 371 AALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 406
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEM-----SSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ +I+ V+ RA AL V +++ FN + + + L+ ++ G+ D
Sbjct: 464 DALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSS--AVDALVESLCQVGRTDD 521
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M E+ + SYN L+ G +R ++A +VF+ M+ P + T +I
Sbjct: 522 AKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVIS 581
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LC +VD+A +L + M ++ PD + +LI G C G LA EEM +E
Sbjct: 582 WLCSAAKVDDAYELVQRMSKL-GCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLE 640
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
M + P+ +Y IL+ G + L+ A ++ +EM + V TL+ GLC RV
Sbjct: 1 MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
EAL+ M + + PD + +L+ LC G+ A G EM+
Sbjct: 61 VEALEHFRAMAK--DCAPDVMTYTALVHALCKAGKFDEAQGMLREMI 105
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY-----GRARL--LEHAL 107
D ++ L + D+ +Q+LH++ E F +S Y G +RL + A
Sbjct: 507 DALVESLCQVGRTDDAKQLLHKMS--------ERGFAAAVSSYNGLLSGLSRLQRWDEAT 558
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
QVF+ M S + + N +++ + + K+D +L Q M K PD + N L+ G
Sbjct: 559 QVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGY 618
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVT 193
S R + A K+ +EM + L+P T
Sbjct: 619 CKSGRADLARKLLEEMTEAGLEPNDTT 645
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++ G+A + ++ + ++ +P+ +++ +IS G+ ++ AL++
Sbjct: 334 DVFTYSYLMDAFGKAGRAAKALEVFYNMQK-AGCMPDTVVYNVLISCLGKQGKVDEALEL 392
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVV 168
++M+ + +++N +++ + +CG+ ++ F +M++ SPD +YN L++G
Sbjct: 393 LEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKK 452
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RR ++A +FDEM + P L TFGTLI L R+++AL+ ++++ + P++
Sbjct: 453 LRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA-PNSY 511
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
++ +LI G C G++ ++M+
Sbjct: 512 IYNALISGFCRSGQVDKGYELFQDMI 537
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ RA EV + +HD + + + +I + R L A Q+F+
Sbjct: 234 YGILVNAHCRAGQMHEVASFMELARHDGCAL-SAVNYNFIIQGFIRCGRLAEATQLFEST 292
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ V ++N LL A+ +++ LFQ E+ V D +Y+ LM + R
Sbjct: 293 MTKESVPDVFTYN-LLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRA 351
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A +VF M K P V + LI L + +VDEAL+L EDM R + PD + +
Sbjct: 352 AKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNR-KGIMPDCRTYNI 410
Query: 233 LIKGLCAVGELSLALGFKEEMVRNK 257
+I L + G A F M R K
Sbjct: 411 VIDVLSSCGRYEKAYSFFGMMKRRK 435
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 97/212 (45%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L +++ +K + P+ + + +++ + R + A +FDEM
Sbjct: 408 YNIVIDVLSSCGRYEKAYSFFGMMKR-RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEM 466
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVS 169
+ + +F TL++ T K RM D + + V +P++ YN L+ G S
Sbjct: 467 QANKCMPDLTTFGTLID---TLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRS 523
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++ +++F +M++ P +T+ L+ G A++L ++M+R + P
Sbjct: 524 GQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHT-PALAT 582
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI+ L G++ A +EM+ D
Sbjct: 583 YNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPD 614
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 9/209 (4%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ KLGR ++ E+ L Q V E+ I +GRA L+ A+ + D+M N
Sbjct: 28 VCKLGRTELLAELLAELRQ----KGVGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGN 83
Query: 118 -VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLED 174
Q +F ++ + ++++ LF M + +PD +YN L+ G + +
Sbjct: 84 FCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDR 143
Query: 175 AWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A +F + + +P V+F TL+ LC R +AL + ++M+ +K D V +L
Sbjct: 144 ALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGA-GLKADVNVCNTL 202
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
I C +G L A M + DA
Sbjct: 203 IHCTCRLGMLRQARRLLHHMTAHACARDA 231
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +A D + +LK + P + F ++ F + AL V
Sbjct: 124 DVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAV 183
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVV 168
F EM ++ V NTL++ G + + L M + DA +Y IL++
Sbjct: 184 FQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCR 243
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ + + + V + +I G R+ EA +L E M +V PD
Sbjct: 244 AGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV-PDVF 302
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI LC +L AL +E + + +D
Sbjct: 303 TYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLD 334
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 41/186 (22%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + + DE + +++ + + +P+ F +I +A +E AL+
Sbjct: 439 DVVTYNTLLNGLKKLRRTDEACDLFDEMQAN-KCMPDLTTFGTLIDTLAKAGRMEDALEQ 497
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ +N L++ G++D+ +LFQ M E PD+ +Y IL+ G
Sbjct: 498 SARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG--F 555
Query: 169 SRR-------------------------------------LEDAWKVFDEMLKRRLQPTL 191
SRR +EDA+ +F EM+ + P +
Sbjct: 556 SRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNPDM 615
Query: 192 VTFGTL 197
T+ L
Sbjct: 616 QTYSAL 621
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++V+++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMVERA 335
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+QV ++MS N ++N + G++D M Y SPD SY ++ G
Sbjct: 336 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 395
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA ++ EM+++ P VTF T I LC + +++A L E M + +
Sbjct: 396 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE-HGCEV 454
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ + +L+ G C G + AL
Sbjct: 455 NIVTYNALVNGFCVQGRVDSAL 476
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 7/225 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + P + + Y ++ L RA+ +++ +++L ++ P E+ F I
Sbjct: 375 NNMGSYGCSP---DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICI 430
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ L+E A + ++MS + + ++N L+N G++D +LF M P+
Sbjct: 431 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNT 488
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y L+ G + RL+ A ++ EML++ P +VTF L+ C + +DEA++L E
Sbjct: 489 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQ 548
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MM + P+ + +L+ G+ AL +V N + D
Sbjct: 549 MME-HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 592
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 39/250 (15%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y II L E +L + H P + + ++ ++
Sbjct: 169 SMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKS 224
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
A++V DEM + + ++N ++N M G++D + + Y PD SY
Sbjct: 225 TGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSY 284
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-- 217
++ G ++R ED ++F EM+++ P VTF L+ C V+ A+++ E M
Sbjct: 285 TTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG 344
Query: 218 --------------------------------MRVYNVKPDAQVFASLIKGLCAVGELSL 245
M Y PD + +++KGLC
Sbjct: 345 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 404
Query: 246 ALGFKEEMVR 255
A +EMVR
Sbjct: 405 AKELLKEMVR 414
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
++ Y+ ++ R D ++++ + V P+ + +I R R+ E AL
Sbjct: 143 DVFAYNTLVAGYCRYGQLDAARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGE-ALS 197
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ D+M Q +V ++ LL A+ + G M L ++ K +P+ +YN++++G
Sbjct: 198 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 257
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R++DA + + + QP V++ T++ GLC R ++ +L +MM N P+
Sbjct: 258 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME-KNCMPNE 316
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
F L++ C G + A+ E+M
Sbjct: 317 VTFDMLVRFFCRGGMVERAIQVLEQM 342
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ D ++ + + P I + +++ A L+ A ++
Sbjct: 455 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 510
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V +FN L++ G +D +L Q+ME +P+ +YN L+ G
Sbjct: 511 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 570
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E+A ++ ++ + P +VT+ ++I L E RV+EA+K+ +++ ++P A
Sbjct: 571 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH-IVQDLGMRPKAV 629
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
++ ++ LC A+ F MV N
Sbjct: 630 IYNKILLALCKRCNTDGAIDFFAYMVSN 657
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 50/218 (22%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGR 99
+ P KP N + Y ++T L A+ D ++L + L+ D P + F ++SF+ +
Sbjct: 481 SMPCKP---NTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSFFCQ 535
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACS 158
L++ A+++ ++M + ++NTLL+ + C + + L ++ VSPD +
Sbjct: 536 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVT 595
Query: 159 YNILMHGCVVSR--RLEDAWKVFD-----------------------------------E 181
Y+ ++ V+SR R+E+A K+F
Sbjct: 596 YSSIIG--VLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 653
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
M+ P +T+ TLI GL E + LK D++R
Sbjct: 654 MVSNGCMPNELTYITLIEGLANE----DFLKETRDLLR 687
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R DA +V + + + TL+ G C ++D A +L M V PDA +
Sbjct: 124 RTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTY 179
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
+I+GLC G + AL ++M+
Sbjct: 180 TPIIRGLCDRGRVGEALSLLDDML 203
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 5/165 (3%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDA 156
G RL A VFD ++ + ++ +V SFNTL+N + G +D L M V PD
Sbjct: 150 GEIRL---AQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDV 206
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y++L++G ++++A K+FDEML R L P VTF TLI G C ++D A+++ +
Sbjct: 207 YTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQ 266
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M+ PD + +LI GLC G+L A +EM ++ D
Sbjct: 267 MLS-QGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPD 310
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + DE ++ ++ D +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDEAHKLFDEML-DRGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
L+ A++++ +M S ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ V++ LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + ++ C G++ + +EM R+
Sbjct: 374 SV-GLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRD 410
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 133/308 (43%), Gaps = 64/308 (20%)
Query: 8 SPFRLAS-LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
+PFR+ LL++QKD L+L+ F + + L P L + +I+ L +
Sbjct: 41 TPFRVNHILLKIQKDHVLSLEFFNS---------LKTLNPISLTLETHSIILHILTKKSK 91
Query: 67 FDEVQQILHQLKHDTRV-VPEEI----------------IFCNVISFYGRARLLEHALQV 109
F Q IL L + +P ++ +F ++ Y +A V
Sbjct: 92 FKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDV 151
Query: 110 FDEMSSFNVQRTVKS-----------------------------------FNTLLNAMLT 134
F M + TV+S FN +L+A+
Sbjct: 152 FSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCK 211
Query: 135 CGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
GK+++ ++ + ME ++P+ SYN L+ G L A K+ + M K L+P +VT
Sbjct: 212 SGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVT 271
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F +LI+G C E ++ EA + + M+V NV P+ + +LI G VG ++A EEM
Sbjct: 272 FNSLIHGFCKEGKLHEANRFFSE-MKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEM 330
Query: 254 VRNKIEMD 261
+RN ++ D
Sbjct: 331 MRNGVKAD 338
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R+ P F V+S ++ LE A++V EM S + V S+NTL+ G +
Sbjct: 194 RISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIA 253
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
T L +M K + P+ ++N L+HG +L +A + F EM + P VT+ TLI G
Sbjct: 254 TKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLING 313
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ A K+ E+MMR VK D + +LI GLC G+
Sbjct: 314 YGQVGNSNMAGKVYEEMMR-NGVKADILTYNALILGLCKEGK 354
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 108/208 (51%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N ++L+++ L ++ ++ ++L +++ + P + + +I+ + LL A ++
Sbjct: 198 NSYTFNLVLSALCKSGKLEKAVEVLREME-SVGITPNVVSYNTLIAGHCNKGLLSIATKL 256
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+ M ++ V +FN+L++ GK+ F M+ V+P+ +YN L++G
Sbjct: 257 KNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQ 316
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A KV++EM++ ++ ++T+ LI GLC E + +A L +++ + N+ P+A
Sbjct: 317 VGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDK-ENLVPNAS 375
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+++LI G CA A + MVR+
Sbjct: 376 TYSALISGQCARKNSDRAFQLYKSMVRS 403
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F ++I + + L A + F EM NV ++NTL+N G + +
Sbjct: 267 PNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKV 326
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ +M V D +YN L+ G + + A + E+ K L P T+ LI G C
Sbjct: 327 YEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCA 386
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
D A +L + M+R P+ Q F L
Sbjct: 387 RKNSDRAFQLYKSMVRS-GCHPNEQTFKMLTSAF 419
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K +++ Y +I+ D + + ++ + + P +++ +I+ + + L
Sbjct: 74 KGLEVDVVVYSTLISGFCSKGCLDRGKALFDEM-LEKGISPNVVVYSCLINGFCKKGLWR 132
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A V M+ +Q V ++ ++ + G+ + DLF +M EK P +YN+L+
Sbjct: 133 EATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLI 192
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN- 222
+G + DA+K+F+ ML++ + +V++ TLI GLC ++DEA+KL ++ N
Sbjct: 193 NGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNY 252
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V+PD F ++I+GLC G L A+ + M+
Sbjct: 253 VEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIE 285
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II L + K ++ +L +++ + P +C ++ + +E A+++
Sbjct: 9 DIVSYNTIINGLCKEKRLEKAVDLLVEME-GSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM ++ V ++TL++ + G +DR LF +++EK +SP+ Y+ L++G
Sbjct: 68 LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+A V M +R +QP + T+ +I GLC + R +AL L D+M +P
Sbjct: 128 KGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF-DLMTEKGEEPSTV 186
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
+ LI GLC G + A E M+
Sbjct: 187 TYNVLINGLCKEGCIGDAFKIFETMLE 213
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLL 103
K R ++ Y+ +I L DE ++ L D V P+ I F VI + L
Sbjct: 214 KGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRL 273
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A++++D M + + + L+ + G ID+ +L++ + K + P + +Y+++
Sbjct: 274 DKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVM 333
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G L A +F M L PTL + TL+ LC E +++A +L ++ M+ N
Sbjct: 334 IDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQE-MKESN 392
Query: 223 VKPDAQVFASLIKGLCAVGELSLA 246
+PD F +I G G++ A
Sbjct: 393 CEPDTISFNIMIDGTLKAGDIHSA 416
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++I + ++ + D+ ++ ++ H +VP + +I + + +L A +
Sbjct: 291 NLFTCHILIGEYIKSGIIDKAMELWKRV-HKLGLVPSSTTYSVMIDGFCKMHMLNFAKGL 349
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F M + T+ +NTL+ ++ +++ LFQ M E PD S+NI++ G +
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + A ++ ++M + L P T+ + I L +++EA K D M + PD
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEA-KGAFDSMIASGITPDNH 468
Query: 229 VFASLIKGL 237
V+ SLIKG
Sbjct: 469 VYDSLIKGF 477
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD SYN +++G +RLE A + EM +P T+ L+ GLC E RV+EA++L
Sbjct: 8 PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+M R ++ D V+++LI G C+ G L +EM+ I
Sbjct: 68 LGEMKR-KGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGI 111
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
LE A ++F EM N + SFN +++ L G I +L M++ ++PDA +Y+
Sbjct: 378 LEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSS 437
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ ++E+A FD M+ + P + +LI G L ++E + L M +
Sbjct: 438 FINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADM- 496
Query: 222 NVKPDAQVFASLIKGLCAVGE 242
V D ++ S++ LC E
Sbjct: 497 GVILDLEITNSILTFLCNSAE 517
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M + + P +V++ T+I GLC E R+++A+ L + M + +P++ + L+ GLC G
Sbjct: 1 MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVE-MEGSSCEPNSFTYCILMDGLCKEG 59
Query: 242 ELSLALGFKEEMVRNKIEMD 261
+ A+ EM R +E+D
Sbjct: 60 RVEEAMRLLGEMKRKGLEVD 79
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 394 NLITFNTLIDGYCGAKRIDDGMELLHEMT-ETGLVADTTTYNTLIHGFYLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
EM S + + + +TLL+ + GK+ ++F++M+K V PD
Sbjct: 453 LQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQ 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF-DS 571
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + P+ F +LI G C G + L EM R I +A
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANA 616
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +FNTLL+ + ++
Sbjct: 110 IRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 NLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C AL L M + ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 4/204 (1%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K+ D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML R + P +T+ ++I G C + R+D A + +M P+ F +LI G C
Sbjct: 348 YDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYC 406
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + EM + D
Sbjct: 407 GAKRIDDGMELLHEMTETGLVADT 430
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+ IL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL L
Sbjct: 112 CDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNL 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALNLFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G DL + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 EELYDEMLPRGI 356
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 482 KDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+FD M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++ L++G + R++D ++F EM +R + +T+ TLI G
Sbjct: 578 -----------SPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ GL + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGLWSKEELKRAVAMLEKL 677
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD+M ++ TV +N+L+N G +DR L M K ++P A SY+ L+ G
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L ++ EM +R + TF LI G C + ++DEA +L + M+ NV P+
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEV 514
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +I+G C VG + A ++MV ++ D
Sbjct: 515 TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPD 547
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 14/214 (6%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN+L Y L K R + EV+ ++ + V +E+ + ++ + R LE AL+
Sbjct: 236 YNVLMYGL--CKNMRVQEAVEVKNVMVNIG----VTADEVTYRTLVYGFCRMEELEMALR 289
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMH 164
+ +M + + + +++ + K + + + F + K + P+ +YN L+
Sbjct: 290 ITHDMIRLGFVPSEANCSFMIDELR---KKELVEEAFSLACKLGDLGMVPNVFAYNALID 346
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ R +DA ++F EM R L+P VT+ LI+ LC +++AL L D MR +K
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF-DKMRDKGIK 405
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ SLI G C G L A G MV+ +
Sbjct: 406 VTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 100/218 (45%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + Y+ +I + D + +L + + + P + +I+ R L
Sbjct: 402 KGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG-LTPTAASYSPLIAGLCRNGDLS 460
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
+++ EM+ + +F L+N K+D LF ++++ V P+ ++N+++
Sbjct: 461 SCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMI 520
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + + A++++D+M++ L+P T+ +LI GLCL V +A + D+ Y V
Sbjct: 521 EGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAV 580
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + A L+ G G + +EM +++D
Sbjct: 581 LNNFSLTA-LLYGFFREGRFTETYHLWDEMAVRGVKLD 617
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ ++ L A + EM + NV ++N L+ T G +++ DL
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + S+NIL+ G + ++++A + ++ + P +++ T+I+ LC
Sbjct: 746 HSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM 805
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++A +L +M+ +KPD + I+ GE ALG M+R+ ++
Sbjct: 806 GDINKAFELWNEML-YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQ 859
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N + +I + K DE ++ ++ D+ V+P E+ F +I Y + A Q
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMI-DSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
++D+M ++ ++ +L++ + + + + +E Y + S L++G
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFF 594
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R + + ++DEM R ++ LV+F ++Y + +++ L + M+ VKPD
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE-MKEQGVKPDD 653
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +I L + AL ++MV
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMV 680
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 3/194 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +L + + V P++I + +I + + AL +D+M + L
Sbjct: 635 EKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVL 694
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N + G + L +++ V P+ +YN + +E A + ML+ L
Sbjct: 695 INNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++V+F LI GLC ++ EA+ L + PD ++++I LC +G+++ A
Sbjct: 755 A-SIVSFNILIKGLCKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAF 812
Query: 248 GFKEEMVRNKIEMD 261
EM+ ++ D
Sbjct: 813 ELWNEMLYKGLKPD 826
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+A ++ A+ + +++ S++T+++ + G I++ +L+ +++ K + PD
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVV 828
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+YNI + C V + A ++ M++ +QP T+ L+ G+ L L D
Sbjct: 829 AYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
+ R A +FD+M V + + A +D L ME + V A
Sbjct: 175 KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAV 234
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN+LM+G + R+++A +V + M+ + VT+ TL+YG C ++ AL++ DM
Sbjct: 235 PYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDM 294
Query: 218 MRVYNVKPDAQ 228
+R+ V +A
Sbjct: 295 IRLGFVPSEAN 305
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 6/216 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y +I+ L + + + L++ V+ + + F+ R
Sbjct: 544 LKPDNYT---YRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 600
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E ++DEM+ V+ + SF ++ A L ++ LF+ M E+ V PD Y +
Sbjct: 601 E-TYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + A +D+M+ P VT LI LC + A L ++M+ N
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML-AGN 718
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
V P+ + + G++ A M++ +
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + ++I L +A E ++K VP E + +I+ + + + A +
Sbjct: 6 NVITWTIMIDGLCKANRLPEATTYFAKMKKKG-TVPNEWTYNVLINGFCKVHKVHRAYLL 64
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V +++T+++ K+D LF Q++E P+ +YN L+ G
Sbjct: 65 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 124
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++A+++ DEM +R LQP ++ TL+ GLC ++D ALK+ ED + PD
Sbjct: 125 NGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN-GDCPPDVV 183
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++LI GLC G L A E+M N E D
Sbjct: 184 AYSTLIAGLCKTGRLDEACKLFEKMRENSCEPD 216
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 103/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + + Q++ ++ + P + + ++I + ++ AL +
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG-IEPNVVTYNSLIHGFCMTNGVDSALLL 309
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+EM++ + ++NTL++ + G+ LF M+ K+ +PD +Y+ L+ G
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCK 369
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ A +FD+MLK+ + P +VTF TL+ G C VD+A +L E+M+ + PD
Sbjct: 370 LERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV-ASDCSPDVY 428
Query: 229 VFASLIKGLCAVGEL 243
+ SL+ G C VG +
Sbjct: 429 TYTSLVDGFCKVGRM 443
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 108/228 (47%), Gaps = 38/228 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +++ L R + DE ++L +++ + + P++ + +++ + ++ AL+V
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMR-ERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++ S+ + V +++TL+ + G++D LF+ M E PD ++ LM G
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229
Query: 169 SRRLE-----------------------------------DAWKVFDEMLKRRLQPTLVT 193
RL+ DA +VF M+ R ++P +VT
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 289
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ +LI+G C+ VD AL L E+M PD + +LI GLC G
Sbjct: 290 YNSLIHGFCMTNGVDSALLLMEEMTAT-GCLPDIITYNTLIDGLCKTG 336
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+++I + +L ++K ++ + P + + VI + R ++ A ++
Sbjct: 41 NEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M + ++NTLL+ + G +D +L M E+ + PD SY+ LM G
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ A KVF++ P +V + TLI GLC R+DEA KL E MR + +PD
Sbjct: 160 TGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEK-MRENSCEPDVV 218
Query: 229 VFASLIKGLC 238
F +L+ GLC
Sbjct: 219 TFTALMDGLC 228
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++ L + E QQ+L ++ D P I + ++I + + A +V
Sbjct: 216 DVVTFTALMDGLCKGDRLQEAQQVLETME-DRNCTPNVITYSSLIDGLCKTGQVRDAQEV 274
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
F M ++ V ++N+L++ +D L + M PD +YN L+ G
Sbjct: 275 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 334
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +A ++F +M + P ++T+ LI G C R+D A L +DM++ V PD
Sbjct: 335 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLK-QAVLPDVV 393
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F++L++G C G + A EEMV + D
Sbjct: 394 TFSTLVEGYCNAGLVDDAERLLEEMVASDCSPD 426
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + + D + + + V+P+ + F ++ Y A L++ A ++
Sbjct: 356 DVITYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERL 414
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG 165
+EM + + V ++ +L++ K+ RM + +++++ P+ +Y L+
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFC---KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDA 471
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + A+K+ +EM+ +QP ++T+ +LI G C ++EA K+ E + R N K
Sbjct: 472 FCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKA 531
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
D + ++ GLC G +S AL
Sbjct: 532 DMFAYRVMMDGLCRTGRMSAAL 553
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I D ++ ++ T +P+ I + +I + A ++
Sbjct: 286 NVVTYNSLIHGFCMTNGVDSALLLMEEMTA-TGCLPDIITYNTLIDGLCKTGRAPEANRL 344
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F +M + V +++ L+ +ID LF ++++ V PD +++ L+ G
Sbjct: 345 FGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 404
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++DA ++ +EM+ P + T+ +L+ G C R+ EA ++ + M + +P+
Sbjct: 405 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAK-RGCQPNVV 463
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +LI C G+ ++A EEMV N ++
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQ 494
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 81/175 (46%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + RA A ++ +EM VQ V ++ +L+ G ++ +
Sbjct: 460 PNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKM 519
Query: 145 FQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ +E+ D +Y ++M G + R+ A ++ + + + P + LI GLC
Sbjct: 520 LERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLC 579
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +A+++ E+M +P+A+ + ++I+ L G A +E++ NK
Sbjct: 580 QGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELLGNK 634
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 2/210 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + Y +I ++ ++ ++ + P+ I++ +IS +A L+
Sbjct: 480 KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEML-EAGCSPDAIVYYTLISGLSQAGKLD 538
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A V +M + SFN L+N K+D ++ + ME + PD +YN L+
Sbjct: 539 RASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLI 598
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ A ++ +M+K L PT+VT+G LI+ CL +DEA+K+ DM V
Sbjct: 599 SHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKV 658
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
P+ ++ LI LC ++ LAL ++M
Sbjct: 659 PPNTVIYNILINSLCRKNQVDLALSLMDDM 688
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ ++T LGRA+ F + +L ++K + + P + F +I+ + R ++ AL+VF++M+
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMK-EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMN 367
Query: 115 S-----FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F V+ V ++NTL++ + G+ + L + M + P+ +YN L+ G
Sbjct: 368 GGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYC 427
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +E A ++FD+M K + P +VT TL+ G+C R++ A++ +M + +K +A
Sbjct: 428 KASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM-QGKGLKGNA 486
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI+ C V + A+ +EM+ DA
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL++F+ N +N ++P +++ Y+ +I L + +E ++ +++ R +
Sbjct: 359 ALEVFEKMNGGESN--GFLVEP---DVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCM 413
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I Y +A ++E A ++FD+M+ V V + NTL++ M G+I+ +
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M+ K + +A +Y L+ +E A ++FDEML+ P + + TLI GL
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ 533
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++D A M+ PD F LI G C +L A +EM I+ D
Sbjct: 534 AGKLDRA-SFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDG 591
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSS 115
+I++L R+ D +LH L V+ E CN +++ GRAR + + EM
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVM--EAASCNALLTALGRAREFKRMNTLLAEMKE 333
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK------YVSPDACSYNILMHGCVVS 169
++Q V +F L+N + ++D ++F+ M V PD +YN L+ G
Sbjct: 334 MDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKV 393
Query: 170 RRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R E+ + + M + R P VT+ LI G C ++ A +L D M V P+
Sbjct: 394 GRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELF-DQMNKDGVPPNVV 452
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ G+C G ++ A+ F EM ++ +A
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNA 486
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 100/243 (41%), Gaps = 45/243 (18%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA----RLLEHALQ--- 108
L+I GRA+M DE + ++L R+ I +V+ GR LL+ LQ
Sbjct: 164 LLIRCFGRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQPKA 223
Query: 109 -----------VFDEMSSFN-VQRTVKS---------------------FNTLLNAMLTC 135
VF +S + V R V L++ +
Sbjct: 224 EFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRS 283
Query: 136 GKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
G+ DR D+ + K +A S N L+ +R + + EM + +QP +VTF
Sbjct: 284 GRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTF 343
Query: 195 GTLIYGLCLELRVDEALKLKEDM----MRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
G LI LC RVDEAL++ E M + V+PD + +LI GLC VG LG
Sbjct: 344 GILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLV 403
Query: 251 EEM 253
E M
Sbjct: 404 ERM 406
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 95/200 (47%), Gaps = 4/200 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ ++++I R DE ++L +++ + + P+ + + +IS + + A
Sbjct: 552 FSPDIVSFNVLINGFCRKNKLDEAYEMLKEME-NAGIKPDGVTYNTLISHFSKTGDFSTA 610
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMH 164
++ +M + TV ++ L++A G +D +F+ M V P+ YNIL++
Sbjct: 611 HRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILIN 670
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+++ A + D+M + ++P TF + GL + + +A +L D M +
Sbjct: 671 SLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELM-DRMTEHACN 729
Query: 225 PDAQVFASLIKGLCAVGELS 244
PD L + L AVGE +
Sbjct: 730 PDYITMEILTEWLSAVGETA 749
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 6/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ L P ++ Y +++ LGR +++ +L +++ + R+ P I+ +VI +
Sbjct: 321 EAKGLLP---TVVTYGTLMSWLGRKGDLEKIASLLSEMR-ERRLPPNVQIYNSVIDALCK 376
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
R AL V +M + +F+TL++ + G++ L + ++ ++P+ S
Sbjct: 377 CRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSS 436
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+HG V + A + EM++R P +VTFG LI+GL + +V EAL ++E M
Sbjct: 437 YTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMA 496
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PDA ++ LI GLC L A EEM+ + D
Sbjct: 497 -ARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPD 538
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+++I G + D + IL + + + ++P + + ++S+ GR LE
Sbjct: 293 NAVFYNVLID--GYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIAS 350
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCV 167
+ EM + V+ +N++++A+ C + + L Q+ PDA +++ L+ G
Sbjct: 351 LLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLC 410
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+++A ++ E + L P L ++ +LI+G C+ V A L +MM + PD
Sbjct: 411 QEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHT-PDV 469
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F +LI GL G++S AL +E+M ++ DA
Sbjct: 470 VTFGALIHGLVVAGQVSEALLVREKMAARQLLPDA 504
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L + + VP + + +I Y R + + + EM + + TV ++ TL++ +
Sbjct: 281 LIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLG 340
Query: 134 TCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G ++++ L M E+ + P+ YN ++ R A V +M P +
Sbjct: 341 RKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAI 400
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
TF TLI GLC E RV EA +L + R + + P+ + SLI G C GE+ +A E
Sbjct: 401 TFSTLISGLCQEGRVQEAERLLRETTR-WELNPNLSSYTSLIHGFCVRGEVIVASNLLVE 459
Query: 253 MV 254
M+
Sbjct: 460 MM 461
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I L + + + +L Q+ P+ I F +IS + ++ A ++
Sbjct: 363 NVQIYNSVIDALCKCRSASQALVVLKQM-FAGGCDPDAITFSTLISGLCQEGRVQEAERL 421
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
E + + + + S+ +L++ G++ ++L ++ME+ +PD ++ L+HG VV
Sbjct: 422 LRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLVV 481
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ +A V ++M R+L P + LI GLC + + A L E+M+ NV PD
Sbjct: 482 AGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLE-QNVHPDKY 540
Query: 229 VFASLIKGL 237
V+ +LI G
Sbjct: 541 VYTTLIDGF 549
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I+ L + KM + ++ ++ + V P++ ++ +I + R L+ A ++F+ M
Sbjct: 507 YNVLISGLCKKKMLPAARNLIEEML-EQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFM 565
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
+ V +N ++ G ++ + M K PD +Y L+ G +
Sbjct: 566 EQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNI 625
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
A + +M+KRR QP +V + +LI G C
Sbjct: 626 SGALSLLCDMMKRRCQPNVVAYSSLINGYC 655
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + F +I A + AL V ++M++ + +N L++ + + +
Sbjct: 466 TPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARN 525
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + ++E+ V PD Y L+ G + + L++A K+F+ M ++ + P +V + +I G C
Sbjct: 526 LIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYC 585
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++EA++ M +V + PD + +LI G G +S AL +M++ + +
Sbjct: 586 QFGMMNEAVECMSTMRKVGRI-PDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQ 641
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 53/249 (21%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K +++ Y+ +I + M +E + + ++ R+ P+E + +I Y + +
Sbjct: 568 KGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRI-PDEFTYTTLIGGYAKQGNIS 626
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL + +M Q V ++++L+N G D LF ME + + P+ +Y IL+
Sbjct: 627 GALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILI 686
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQP------TLVT------------------------ 193
++ A F+ ML + P +LVT
Sbjct: 687 GSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKG 746
Query: 194 --------------------FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+ +I+ LC+ + EAL LK M KPD+ F SL
Sbjct: 747 ALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMAN-KGYKPDSATFLSL 805
Query: 234 IKGLCAVGE 242
+ G C+VG+
Sbjct: 806 LYGFCSVGK 814
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 72/195 (36%), Gaps = 36/195 (18%)
Query: 61 LGRAKMFDEVQQILH--QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
L RA FD V L L VP +++ Y A + A ++
Sbjct: 160 LARAGRFDAVDATLRDMSLAGAAAAVPTRACLGALVATYADAGMEAKAAEM--------C 211
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
QR + TL P A N L+ V RR +DA K+
Sbjct: 212 QRAREHHGTL-------------------------PGATHTNRLLRLLVERRRWDDARKL 246
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEML + ++ GLCLE V++ LKL E V P+A + LI G C
Sbjct: 247 YDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCV-PNAVFYNVLIDGYC 305
Query: 239 AVGELSLALGFKEEM 253
G++ + EM
Sbjct: 306 RRGDVGRGILLLGEM 320
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 8/224 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYG 98
E + P RY+ Y++++ L +A D+ + H +I+ CN+ I +
Sbjct: 432 EMSGVNPDRYS---YNILLKGLCKAHQLDKAFAFVSD--HMEVGGFCDIVSCNILIDAFC 486
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
RA+ + AL +F EM +Q ++ L+N + G + +LF Q++ + P+
Sbjct: 487 RAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVN 546
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YNI++H + A K+F +M ++ + P VTF TLIY L R EAL L ++
Sbjct: 547 VYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKE- 605
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MR V+PD F +I GL G+ +LA E M+ N I +D
Sbjct: 606 MRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILD 649
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 135 CGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
CG +R+ D Q++EK PD +Y ++ RR +A +++EM++R L+P
Sbjct: 276 CGH-NRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD 334
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+V G LI+GLC +VDEA +L M+ + +++ + ++ +LI G G + A
Sbjct: 335 VVACGALIFGLCKNQKVDEAFELASRMLTL-DIQLNVSIYNALISGFWRAGSIEKAYKTV 393
Query: 251 EEMVRNKIEMD 261
M RN E D
Sbjct: 394 SFMQRNGCEPD 404
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF + +LR D +A++ + P F +N II+ L F
Sbjct: 92 PFVVNKVLRGLLDSGMAVRFYWWAESRPG---------FYHNNFAIAYIISLLFVDDNFA 142
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+ + L +++ V ++ +++ Y RA + ++ FDEM + + +N
Sbjct: 143 LLSEFLGRVRSQG-VAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRF 201
Query: 129 LNAML-TC----------------------------------GKIDRMTDLFQIMEKYVS 153
+ M+ C +I+ + +L M+K+
Sbjct: 202 IGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGC 261
Query: 154 -PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD + NI +H RL DA ++ ++M + P +VT+ T++ LC R EA+
Sbjct: 262 FPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVG 321
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L E+M+R +KPD +LI GLC ++ A M+ I+++
Sbjct: 322 LWEEMVR-RGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 7/227 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-Y 97
E +K +++ Y +++ L + F E + ++ R + +++ C + F
Sbjct: 288 VEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR--RGLKPDVVACGALIFGL 345
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDA 156
+ + ++ A ++ M + ++Q V +N L++ G I++ M++ PD
Sbjct: 346 CKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405
Query: 157 CSYNILM-HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL+ H C + + A + +M + P ++ L+ GLC ++D+A
Sbjct: 406 VTYNILLNHYCSIGMT-DKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS 464
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D M V D LI C +++ AL +EM I+ DA
Sbjct: 465 DHMEVGGF-CDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADA 510
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 30 KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
K N N + K + + + Y ++I L + +++ Q+ +T++VP +
Sbjct: 489 KKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQML-NTKIVPNVNV 547
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+ ++ + +HA ++F +M+ V +FNTL+ + + DLF+ M
Sbjct: 548 YNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMR 607
Query: 150 -KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
K V PD ++ ++ G + + A+++++ M++
Sbjct: 608 TKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMME 643
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 91/165 (55%), Gaps = 5/165 (3%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDA 156
G RL A VFD ++ + ++ +V SFNTL+N + G +D L M PD
Sbjct: 150 GEMRL---AQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDV 206
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y+IL++G +L++A ++F+EML L P VTF TLI+G C +VD A+++ +
Sbjct: 207 YTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQ 266
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M+ + PD + +LI GLC GEL +EM+ N ++ D
Sbjct: 267 MLS-QGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPD 310
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + P+ + +I+ + L+ A ++F+EM + +F TL++ K+
Sbjct: 198 HASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKV 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + +SPD +YN L++G L+ + DEM+ L+P +++ TL
Sbjct: 258 DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
I G C E ++ AL+L+ M++ +++ D + +LI LC G S A E+M+R
Sbjct: 318 IDGSCKEGDLEIALELRNKMIQ-ESIRLDDVAYTALISCLCREGRASDA----EKMLR 370
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 8/224 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYG 98
E + P RY+ Y++++ L +A D+ + H +I+ CN+ I +
Sbjct: 432 EMSGVNPDRYS---YNILLKGLCKAHQLDKAFAFVSD--HMEVGGFCDIVSCNILIDAFC 486
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
RA+ + AL +F EM +Q ++ L+N + G + +LF Q++ + P+
Sbjct: 487 RAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVN 546
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YNI++H + A K+F +M ++ + P VTF TLIY L R EAL L ++
Sbjct: 547 VYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKE- 605
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MR V+PD F +I GL G+ +LA E M+ N I +D
Sbjct: 606 MRTKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMMENGIILD 649
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 135 CGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
CG +R+ D Q++EK PD +Y ++ RR +A +++EM++R L+P
Sbjct: 276 CGH-NRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPD 334
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+V G LI+GLC +VDEA +L M+ + +++ + ++ +LI G G + A
Sbjct: 335 VVACGALIFGLCKNQKVDEAFELASRMLTL-DIQLNVSIYNALISGFWRAGSIEKAYKTV 393
Query: 251 EEMVRNKIEMD 261
M RN E D
Sbjct: 394 SFMQRNGCEPD 404
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 117/289 (40%), Gaps = 47/289 (16%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
PF + +LR D +A++ + P F +N II+ L F
Sbjct: 92 PFVVNKVLRGLSDSGMAVRFYWWAESRPG---------FYHNNFAIAYIISLLFVDDNFA 142
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+ + L +++ V ++ +++ Y RA + ++ FDEM + + +N
Sbjct: 143 LLLEFLGRVRSQG-VAFHRSLYRVLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRF 201
Query: 129 LNAML-TC----------------------------------GKIDRMTDLFQIMEKYVS 153
+ M+ C +I+ + +L M+K+
Sbjct: 202 IGVMIKNCCFDLVEKYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGC 261
Query: 154 -PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD + NI +H RL DA ++ ++M + P +VT+ T++ LC R EA+
Sbjct: 262 FPDFWACNIYVHYLCGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVG 321
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L E+M+R +KPD +LI GLC ++ A M+ I+++
Sbjct: 322 LWEEMVR-RGLKPDVVACGALIFGLCKNQKVDEAFELASRMLTLDIQLN 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 99/227 (43%), Gaps = 7/227 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-Y 97
E +K +++ Y +++ L + F E + ++ R + +++ C + F
Sbjct: 288 VEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVR--RGLKPDVVACGALIFGL 345
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDA 156
+ + ++ A ++ M + ++Q V +N L++ G I++ M++ PD
Sbjct: 346 CKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDV 405
Query: 157 CSYNILM-HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL+ H C + + A + +M + P ++ L+ GLC ++D+A
Sbjct: 406 VTYNILLNHYCSIGMT-DKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVS 464
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D M V D LI C +++ AL +EM I+ DA
Sbjct: 465 DHMEVGGF-CDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADA 510
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 30 KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
K N N + K + + + Y ++I L + +++ Q+ +T++VP +
Sbjct: 489 KKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYSNLAEELFDQML-NTKIVPNVNV 547
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+ ++ + +HA ++F +M+ V +FNTL+ + + DLF+ M
Sbjct: 548 YNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMR 607
Query: 150 -KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
K V PD ++ ++ G + + A+++++ M++
Sbjct: 608 TKGVEPDNLTFRYIISGLLDEGKATLAYEIWEYMME 643
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GSCKEGDLETAFEYRKIMIK-ENIRLDDVAYTALISGLCQEG 360
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++V+++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMVERA 304
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+QV ++MS N ++N + G++D M Y SPD SY ++ G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA ++ EM+++ P VTF T I LC + +++A L E M + +
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE-HGCEV 423
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ + +L+ G C G + AL
Sbjct: 424 NIVTYNALVNGFCVQGRVDSAL 445
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 7/225 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + P + + Y ++ L RA+ +++ +++L ++ P E+ F I
Sbjct: 344 NNMGSYGCSP---DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICI 399
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ L+E A + ++MS + + ++N L+N G++D +LF M P+
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNT 457
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y L+ G + RL+ A ++ EML++ P +VTF L+ C + +DEA++L E
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQ 517
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MM + P+ + +L+ G+ AL +V N + D
Sbjct: 518 MME-HGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPD 561
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 39/250 (15%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y II L E +L + H P + + ++ ++
Sbjct: 138 SMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKS 193
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
A++V DEM + + ++N ++N M G++D + + Y PD SY
Sbjct: 194 TGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSY 253
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-- 217
++ G ++R ED ++F EM+++ P VTF L+ C V+ A+++ E M
Sbjct: 254 TTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG 313
Query: 218 --------------------------------MRVYNVKPDAQVFASLIKGLCAVGELSL 245
M Y PD + +++KGLC
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373
Query: 246 ALGFKEEMVR 255
A +EMVR
Sbjct: 374 AKELLKEMVR 383
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
++ Y+ ++ R D ++++ + V P+ + +I R R+ E AL
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGE-ALS 166
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ D+M Q +V ++ LL A+ + G M L ++ K +P+ +YN++++G
Sbjct: 167 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 226
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R++DA + + + QP V++ T++ GLC R ++ +L +MM N P+
Sbjct: 227 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME-KNCMPNE 285
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
F L++ C G + A+ E+M
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQM 311
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ D ++ + + P I + +++ A L+ A ++
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 479
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V +FN L++ G +D +L Q+ME +P+ +YN L+ G
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITN 539
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E+A ++ ++ + P +VT+ ++I L E RV+EA+K+ +++ ++P A
Sbjct: 540 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH-IVQDLGMRPKAV 598
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
++ ++ LC A+ F MV N
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSN 626
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 50/218 (22%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGR 99
+ P KP N + Y ++T L A+ D ++L + L+ D P + F ++SF+ +
Sbjct: 450 SMPCKP---NTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSFFCQ 504
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACS 158
L++ A+++ ++M + ++NTLL+ + C + + L ++ VSPD +
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVT 564
Query: 159 YNILMHGCVVSR--RLEDAWKVFD-----------------------------------E 181
Y+ ++ V+SR R+E+A K+F
Sbjct: 565 YSSIIG--VLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
M+ P +T+ TLI GL E + LK D++R
Sbjct: 623 MVSNGCMPNELTYITLIEGLANE----DFLKETRDLLR 656
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R DA +V + + + TL+ G C ++D A +L M V PDA +
Sbjct: 93 RTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTY 148
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
+I+GLC G + AL ++M+
Sbjct: 149 TPIIRGLCDRGRVGEALSLLDDML 172
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y ++ L AK +++V+++ ++ + +P E+ F ++ F+ R ++E A
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-MEKNCMPNEVTFDMLVRFFCRGGMVERA 304
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+QV ++MS N ++N + G++D M Y SPD SY ++ G
Sbjct: 305 IQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKG 364
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA ++ EM+++ P VTF T I LC + +++A L E M + +
Sbjct: 365 LCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSE-HGCEV 423
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ + +L+ G C G + AL
Sbjct: 424 NIVTYNALVNGFCVQGRVDSAL 445
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 7/225 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + P + + Y ++ L RA+ +++ +++L ++ P E+ F I
Sbjct: 344 NNMGSYGCSP---DTISYTTVLKGLCRAERWEDAKELLKEMVRKN-CPPNEVTFNTFICI 399
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ L+E A + ++MS + + ++N L+N G++D +LF M P+
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--CKPNT 457
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y L+ G + RL+ A ++ EML++ P +VTF L+ C + +DEA++L E
Sbjct: 458 ITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQ 517
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
MM + P+ + +L+ G+ AL +V N + D
Sbjct: 518 MME-HGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPD 561
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 39/250 (15%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y II L E +L + H P + + ++ ++
Sbjct: 138 SMPVAPDAYT---YTPIIRGLCDRGRVGEALSLLDDMLHRG-CQPSVVTYTVLLEAVCKS 193
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
A++V DEM + + ++N ++N M G++D + + Y PD SY
Sbjct: 194 TGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSY 253
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-- 217
++ G ++R ED ++F EM+++ P VTF L+ C V+ A+++ E M
Sbjct: 254 TTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG 313
Query: 218 --------------------------------MRVYNVKPDAQVFASLIKGLCAVGELSL 245
M Y PD + +++KGLC
Sbjct: 314 HGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWED 373
Query: 246 ALGFKEEMVR 255
A +EMVR
Sbjct: 374 AKELLKEMVR 383
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
++ Y+ ++ R D ++++ + V P+ + +I R R+ E AL
Sbjct: 112 DVFAYNTLVAGYCRYGQLDAARRLIASMP----VAPDAYTYTPIIRGLCDRGRVGE-ALS 166
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ D+M Q +V ++ LL A+ + G M L ++ K +P+ +YN++++G
Sbjct: 167 LLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMC 226
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R++DA + + + QP V++ T++ GLC R ++ +L +MM N P+
Sbjct: 227 REGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMME-KNCMPNE 285
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
F L++ C G + A+ E+M
Sbjct: 286 VTFDMLVRFFCRGGMVERAIQVLEQM 311
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 6/208 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ D ++ + + P I + +++ A L+ A ++
Sbjct: 424 NIVTYNALVNGFCVQGRVDSALELFYSMP----CKPNTITYTTLLTGLCNAERLDAAAEL 479
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + V +FN L++ G +D +L Q+ME +P+ +YN L+ G
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITK 539
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E+A ++ ++ + P +VT+ ++I L E RV+EA+K+ +++ ++P A
Sbjct: 540 DCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFH-IVQDLGMRPKAV 598
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
++ ++ LC A+ F MV N
Sbjct: 599 IYNKILLALCKRCNTDGAIDFFAYMVSN 626
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 50/218 (22%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGR 99
+ P KP N + Y ++T L A+ D ++L + L+ D P + F ++SF+ +
Sbjct: 450 SMPCKP---NTITYTTLLTGLCNAERLDAAAELLAEMLQKD--CAPNVVTFNVLVSFFCQ 504
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACS 158
L++ A+++ ++M + ++NTLL+ + C + + L ++ VSPD +
Sbjct: 505 KGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVT 564
Query: 159 YNILMHGCVVSR--RLEDAWKVFD-----------------------------------E 181
Y+ ++ V+SR R+E+A K+F
Sbjct: 565 YSSIIG--VLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAY 622
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
M+ P +T+ TLI GL E + LK D++R
Sbjct: 623 MVSNGCMPNELTYITLIEGLANE----DFLKETRDLLR 656
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R DA +V + + + TL+ G C ++D A +L M V PDA +
Sbjct: 93 RTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM----PVAPDAYTY 148
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
+I+GLC G + AL ++M+
Sbjct: 149 TPIIRGLCDRGRVGEALSLLDDML 172
>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Brachypodium distachyon]
Length = 476
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + VI R A ++F EM + V TV ++ T++N + G +D +
Sbjct: 192 PDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKM 251
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M + ++P+ +Y+ L+ G R A ++ D M K P +T+ ++I GLC
Sbjct: 252 FDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCK 311
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
E R++EA+++ D MR+ KPDA +F LI GLC G A + +EMV + +E
Sbjct: 312 EDRLNEAMEVL-DRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVE 366
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 121/275 (44%), Gaps = 39/275 (14%)
Query: 15 LLRLQKDPKLALQLFKNPN---------PNPNNTE-------AQPLKPFRYNLLH----- 53
L+R ++DP+ AL LF P+P+ + L P +LL
Sbjct: 23 LVRAERDPRRALALFDAATAASVSAPILPSPDTVSLLTSRLASAGLLPLATSLLSRSRAL 82
Query: 54 ----YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR--ARLLEH-- 105
DL L + F + L L+ R P + + Y A L+ H
Sbjct: 83 FPSAADLEPPFLTLLRAFSRTHRPLAALQL-FRSAPSALALPHSARSYTAVLATLVSHSH 141
Query: 106 ---ALQVFDEMSSFNVQRTVKSFNTLLNAMLT--CGKIDRMTDLFQIMEKYVSPDACSYN 160
A + +M + T ++N LL A + I+ LF+ + K PDACSYN
Sbjct: 142 LPLAHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFRNIPK---PDACSYN 198
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ G R DA ++F EM+ + PT+VT+ T+I L + +D+ALK+ ++M R+
Sbjct: 199 TVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRI 258
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ P+ ++SLI GLC G + AL + M +
Sbjct: 259 -GIAPNVVTYSSLIDGLCKGGRAASALELLDRMAK 292
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 108/227 (47%), Gaps = 26/227 (11%)
Query: 25 ALQLFKN-PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83
A++LF+N P P+ + Y+ +I L R + Q+I ++ + V
Sbjct: 182 AVRLFRNIPKPDACS---------------YNTVIDGLCRRSRRADAQEIFSEMVANG-V 225
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + + VI++ R L+ AL++FDEM + V ++++L++ + G+ +
Sbjct: 226 APTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALE 285
Query: 144 LFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M K P+ +Y+ +++G RL +A +V D M + +P FG LI GLC
Sbjct: 286 LLDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLC 345
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFA-------SLIKGLCAVGE 242
R EA ++M+ + V+P+ ++ +++ LCA GE
Sbjct: 346 GAGRAVEAANYLDEMV-LSGVEPNRVTWSLHVRINDAVVTALCAKGE 391
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+++I L + F++ + ++ + LK +V + +I Y +L AL
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV--SAYTYNPLIYGYFNKGMLAEALS 325
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ +EM TV ++N+ + + G++ D M L ++ + PD SYN L++G
Sbjct: 326 LQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYC 385
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L A+ +FDE+ L PT+VT+ TL+ GLC + ++ A +LK +M+ + PD
Sbjct: 386 RLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN-EGIAPDI 444
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ L+ G C +G LS+A F +EM+ +E+D+
Sbjct: 445 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS 479
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEM 113
DL+I + M ++ + ++ +R+ P+ + CN I R + L+ A++V+ M
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIK-SRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTM 225
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
F ++ T+ ++NTLL++ GK+ + DL M++ +P+ +YN+L++G
Sbjct: 226 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 285
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + EMLK L+ + T+ LIYG + + EAL L+E+M+ + P + S
Sbjct: 286 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMV-LKGASPTVATYNS 344
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
I GLC +G +S A+ +M+ N +
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNL 370
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D +QQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCV 167
+FDE+ S + T+ ++NTLL+ + G+++ L +++ + ++PD +Y IL++G
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVK 224
L A + FDEML L+ + T I G EL++ + A L+E+M+
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVG---ELKLGDTSRAFSLQEEML-AKGFP 511
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
PD ++ ++ GLC +G L A ++MV + +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGV 545
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNV 118
+G K+ D + Q + + P ++I NV+ G +L LE A ++ +M S V
Sbjct: 487 VGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVV-VDGLCKLGNLEEASELLQKMVSDGV 545
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
++ ++++A L G++ + ++F +++ K ++P +Y +L+HG RLE A+
Sbjct: 546 IPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFI 605
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
F EM ++ + P ++T+ +LI GLC R+D+A +M+ + P+ + LI
Sbjct: 606 YFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVE-KGIFPNKYSYTILINEN 664
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C +G AL ++M+ ++ D+
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDS 689
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS--------- 95
K F +L+ Y++++ L + +E ++L ++ D V+P+ + + ++I
Sbjct: 508 KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG-VIPDYVTYTSIIHAHLENGRLR 566
Query: 96 -----FY----------------------GRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
FY G+ RL E A F EM + V ++N+L
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL-ERAFIYFSEMQEKGILPNVITYNSL 625
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N + ++D+ + F +++EK + P+ SY IL++ ++A ++ +ML R +
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685
Query: 188 QPTLVTFGTLI 198
QP T L+
Sbjct: 686 QPDSCTHSALL 696
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 86/192 (44%), Gaps = 16/192 (8%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--------------TVKSFNTLLNA 131
E +FC ++ + L+ A V + + + N+ R +VK + L+
Sbjct: 114 SEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWV 173
Query: 132 MLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+++ +F ++++ +SPD + N ++ + A +V+ M + ++PT
Sbjct: 174 YSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPT 233
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ TL+ C +V + L L +M R P+ + LI GL GE A G
Sbjct: 234 IVTYNTLLDSYCKGGKVQQGLDLLSEMQR-RGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292
Query: 251 EEMVRNKIEMDA 262
EM++ +++ A
Sbjct: 293 GEMLKTGLKVSA 304
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 112/218 (51%), Gaps = 7/218 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ L +A D+ +L ++ P+ I++ +++ ++R L+ AL++
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLNGLCKSRRLDEALEL 228
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M TV ++N+L+ ++DR L Q+M E+ PD +YN ++ G
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE-----DMMRVYNV 223
RL+DA + +M+ R P ++T+ T+I GLC + RVD KL+ +MM+
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+A +A +I+GLC + AL M+ +++ D
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
QL + R VP E + ++I +A L+ A ++ DEM + V N ++ +
Sbjct: 19 QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKA 78
Query: 136 GKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM-LKRRLQPTLVT 193
G+ F+ + +PD ++NIL+ V S R+E+A+++F+ M + P +VT
Sbjct: 79 GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I GLC + ++D A++L D+M P+ ++ L++GLC G +EM
Sbjct: 139 YTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197
Query: 254 VRNKIEMD 261
R + D
Sbjct: 198 TRRGFQPD 205
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 4/187 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I L +A F + + T+ P+ I F ++ ++ +E A Q+F+ M
Sbjct: 68 HNGVIKGLCKAGRFGDALGYFKTVA-GTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126
Query: 114 -SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
+S V ++ T++N + GK+DR +L +M E P+ +Y++L+ G + R
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ + + EM +R QP ++ + TL+ GLC R+DEAL+L + M+R P +
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCYPTVVTYN 245
Query: 232 SLIKGLC 238
SL++ C
Sbjct: 246 SLMELFC 252
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 6/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHAL 107
N Y ++I L RA+ + QQ L L+ D+ VVP+ F VI ++ L+ A
Sbjct: 351 NAGTYAVVIEGLCRAR---KSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
++F MS + ++ L++ + G++D+ +F++M + P +YN ++ G
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLC 467
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+E+A ++ + M+ + P ++G LI GLC V+EA +L + + +
Sbjct: 468 GVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ-AVEAKGFAMEV 526
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
V+ L+ LC LS A G +++
Sbjct: 527 GVYNVLVNELCKKKRLSDAHGVANKLI 553
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVK---SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSP 154
RA A+Q+F E +R V ++ +L++ + GK+D+ +L M ++ + P
Sbjct: 10 RAGQHGQAVQLFRE------ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPP 63
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+N ++ G + R DA F + + P ++TF L+ L RV+EA ++
Sbjct: 64 GVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E M P+ + ++I GLC G+L A+
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 9/214 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ ++ R+K D +++ Q+ + P+ I + VI+ R L+ A +
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLI-QVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR------MTDLFQIMEKY-VSPDACSYNIL 162
+M + V +++T+++ + ++D ++ ++M++ P+A +Y ++
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G +R+ + A + M+ + P L +F +I LC +D A K+ MM
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF-GMMSERE 417
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
KP+ +A+LI GL GE+ A+ E MV +
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 27/260 (10%)
Query: 10 FRLASLLRLQKDPKLA----LQLFKNPNPNPNNTEA--QPLKPFRYNLLHYDLIITKLGR 63
F +A+ L +DP A ++ + P+P+ + E K F + + +DL++ L
Sbjct: 151 FAVAAHLAAVRDPGAARAILVRALRFPSPHRHFVEQFISTYKAFSSDPVSFDLLLLCLPS 210
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFNVQRTV 122
A + ++Q + PE CN + RL L+ A+Q+F E+ ++
Sbjct: 211 APLLLRLRQ------YGISPSPES---CNAV----LCRLPLDEAVQLFQELP----EKNT 253
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N LL A+ T G+I LF M PD +Y I++HG LE A K+ EM
Sbjct: 254 CSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
R L+ V + ++I LC E +V +A+++ EDM+ ++ V DA VF +++ G C G+
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV-MHGVVLDAAVFTTVMSGFCRKGD 370
Query: 243 LSLALGFKEEMVRNKIEMDA 262
L+ A + +EM + + D
Sbjct: 371 LAAARNWFDEMQKRGLAADG 390
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IM 148
+ ++I+ +A LE A++ +M ++ V ++ T++ A+ ++DR L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+K + P +YN+LM+G +S R+E ++ + ML++ + P T+ +L+ C+E +
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ + M+ V P+ + LIKG C + AL F EM+ + A
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y +I L ++ D V+ + + H VV + +F V+S + R L A
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG--VVLDAAVFTTVMSGFCRKGDLAAARN 376
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
FDEM + ++ L+N + G++ + Q ME K + DA +Y +L+ G
Sbjct: 377 WFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYC 436
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ +A+ V ++M+++R+ P +VT+ L GLC + V A +L +M ++ +
Sbjct: 437 KVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS-KGLELNI 495
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLC G L E+ +R I+MD
Sbjct: 496 FTYNSLINGLCKAGNL-------EQAMRTMIDMD 522
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
++H RV P + + + + + A ++ EM S ++ + ++N+L+N +
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 133 LTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G +++ M + + E + PD +Y ++ S+ L+ A + EML + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
VT+ L+ G C+ RV+ +L E M+ N+ P+ + SL+K C
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYC 611
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y II L ++K D +L ++ D + P + + +++ + + +
Sbjct: 526 LKPDVYT---YTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
E ++ + M N+ ++N+L+ + T++++ ++ + V P+ +YNIL
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-VY 221
+ G +R +++A EM+++ + T ++ LI L + + EA +L E M +
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRL 701
Query: 222 NVKPDAQVF 230
+PD F
Sbjct: 702 TAEPDVYNF 710
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 112/218 (51%), Gaps = 7/218 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ L +A D+ +L ++ P+ I++ +++ ++R L+ AL++
Sbjct: 170 NVITYSVLVEGLCKAGRTDKGFTLLQEMTRRG-FQPDVIMYNTLLNGLCKSRRLDEALEL 228
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M TV ++N+L+ ++DR L Q+M E+ PD +YN ++ G
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE-----DMMRVYNV 223
RL+DA + +M+ R P ++T+ T+I GLC + RVD KL+ +MM+
Sbjct: 289 DARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGC 348
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+A +A +I+GLC + AL M+ +++ D
Sbjct: 349 PPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPD 386
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 3/188 (1%)
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
QL + R VP E + ++I +A L+ A ++ DEM + V N ++ +
Sbjct: 19 QLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKA 78
Query: 136 GKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM-LKRRLQPTLVT 193
G+ F+ + +PD ++NIL+ V S R+E+A+++F+ M + P +VT
Sbjct: 79 GRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVT 138
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I GLC + ++D A++L D+M P+ ++ L++GLC G +EM
Sbjct: 139 YTTVINGLCKDGKLDRAIELL-DLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEM 197
Query: 254 VRNKIEMD 261
R + D
Sbjct: 198 TRRGFQPD 205
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 4/187 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I L +A F + + T+ P+ I F ++ ++ +E A Q+F+ M
Sbjct: 68 HNGVIRGLCKAGRFGDALGYFKTVA-GTKCTPDIITFNILVDALVKSGRVEEAFQIFESM 126
Query: 114 -SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
+S V ++ T++N + GK+DR +L +M E P+ +Y++L+ G + R
Sbjct: 127 HTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ + + EM +R QP ++ + TL+ GLC R+DEAL+L + M+R P +
Sbjct: 187 TDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIR-SGCYPTVVTYN 245
Query: 232 SLIKGLC 238
SL++ C
Sbjct: 246 SLMELFC 252
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 6/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHAL 107
N Y ++I L RA+ + QQ L L+ D+ VVP+ F VI ++ L+ A
Sbjct: 351 NAGTYAVVIEGLCRAR---KSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
++F MS + ++ L++ + G++D+ +F++M + P +YN ++ G
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLC 467
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+E+A ++ + M+ + P ++G LI GLC V+EA +L + + +
Sbjct: 468 GVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQ-AVEAKGFAMEV 526
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
V+ L+ LC LS A G +++
Sbjct: 527 GVYNVLVNELCKKKRLSDAHGVANKLI 553
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVK---SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSP 154
RA A+Q+F E +R V ++ +L++ + GK+D+ +L M ++ + P
Sbjct: 10 RAGQHGQAVQLFRE------ERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPP 63
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+N ++ G + R DA F + + P ++TF L+ L RV+EA ++
Sbjct: 64 GVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIF 123
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E M P+ + ++I GLC G+L A+
Sbjct: 124 ESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 102/214 (47%), Gaps = 9/214 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ ++ R+K D +++ Q+ + P+ I + VI+ R L+ A +
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLI-QVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR------MTDLFQIMEKY-VSPDACSYNIL 162
+M + V +++T+++ + ++D ++ ++M++ P+A +Y ++
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G +R+ + A + M+ + P L +F +I LC +D A K+ MM
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF-GMMSERE 417
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
KP+ +A+LI GL GE+ A+ E MV +
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES 451
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + + ++ + ++ A++VFD M V S+ TL+N KID+
Sbjct: 297 VEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAM 356
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ M K PD +YN LMHG RL+DA +F EM+ R P LVT+ L+ L
Sbjct: 357 YLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL 416
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C ++EA+ L + + N+ PD QV+ +I G+C GEL A
Sbjct: 417 CKNCHLEEAMALLK-AIEASNLNPDIQVYNIIIDGMCRAGELEAA 460
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II L + + E + Q+ + P+ + +++ +H + ++M
Sbjct: 199 YTSIIDSLCKDRQVTEAFNLFSQMVGQG-ISPDIFTYTSLVHALCNLCEWKHVTTLLNQM 257
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + V F+T+++A+ GK+ ++ +M ++ V PD +Y LM G + +
Sbjct: 258 VNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEM 317
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A KVFD M+++ P ++++ TLI G C ++D+A+ L E+M R + PD + + +
Sbjct: 318 DEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDTKTYNT 376
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ GLC VG L A+ EMV
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMV 398
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 12 LASLLRL--QKDPKLALQLFKNPNPNPNNTEAQPL------KPFRYNLLHYDLIITKLGR 63
LA +L+L Q DP L + EA L + F+ N++ Y +I L +
Sbjct: 114 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 173
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
++L ++ P+ +I+ ++I + R + A +F +M + +
Sbjct: 174 VGNTSAAIRLLRSMEQG-NCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF 232
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ +L++A+ + +T L Q++ + PD ++ ++ ++ +A ++ D M
Sbjct: 233 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 292
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
++R ++P +VT+ TL+ G CL+ +DEA+K+ DMM PD + +LI G C + +
Sbjct: 293 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF-DMMVRKGFAPDVISYTTLINGYCKIHK 351
Query: 243 LSLALGFKEEMVRNK 257
+ A+ EEM R +
Sbjct: 352 IDKAMYLFEEMCRKE 366
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ + + L + +M SF V V + N L+N+ ++R+
Sbjct: 54 PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC---HLNRVGFA 110
Query: 145 FQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F ++ K + PD ++ L+ G V ++ +A +FD+M+ QP +VT+GTLI G
Sbjct: 111 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 170
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
LC A++L M + N +PD ++ S+I LC +++ A +MV I
Sbjct: 171 LCKVGNTSAAIRLLRSMEQ-GNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISP 229
Query: 261 D 261
D
Sbjct: 230 D 230
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 2/183 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D P + + +I+ + A+++ M N Q V + ++++++ ++
Sbjct: 154 DEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVT 213
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+LF Q++ + +SPD +Y L+H + + ++M+ ++ P +V F T++
Sbjct: 214 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVV 273
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC E +V EA ++ DMM V+PD + +L+ G C E+ A+ + MVR
Sbjct: 274 DALCKEGKVTEAHEIV-DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 332
Query: 259 EMD 261
D
Sbjct: 333 APD 335
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 97/218 (44%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y +I + D+ + ++ +P+ + ++ L+
Sbjct: 330 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCR-KEWIPDTKTYNTLMHGLCHVGRLQ 388
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
A+ +F EM + + +++ LL+++ C + M L I ++PD YNI++
Sbjct: 389 DAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIII 448
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + LE A +F + + L P++ T+ +I+GLC ++EA KL + M +
Sbjct: 449 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME-MDGNDC 507
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + ++ +G E A+ EEM+ D
Sbjct: 508 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 545
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + +E +L ++ + + P+ ++ +I RA LE A +
Sbjct: 405 DLVTYSILLDSLCKNCHLEEAMALLKAIEA-SNLNPDIQVYNIIIDGMCRAGELEAARDL 463
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +SS + +V ++N +++ + G ++ LF M+ SPD C+YN + G +
Sbjct: 464 FSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 523
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK----------LKEDMM 218
+ A ++ +EML R + T L+ E+ D+ L L ED
Sbjct: 524 NNETLRAIQLLEEMLARGFSADVSTTTLLV-----EMLSDDGLDQSSCFLMLSVLSEDDR 578
Query: 219 RVYNVKPDA------QVFASLIKGLCAVGELS 244
R + P+ + +K L +GE+S
Sbjct: 579 RYFIFIPEGFDLLGWEFMRCKLKELAKIGEVS 610
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++T L + +V+ +L Q+K ++ + P + ++ Y + + L+ A +V + M
Sbjct: 249 YNTVLTALCKRSQLTQVRDLLLQMK-NSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELM 307
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + V ++NT++ + GKID L ME + + PD +YN L+ GC R
Sbjct: 308 TGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGS 367
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+K+ +EM R ++ VT +I C E ++DEA + M+ PD + +
Sbjct: 368 DAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVES-GFSPDCFTYNT 426
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+I G C G+++ A +EM R +++D
Sbjct: 427 MINGYCKAGKMAEAYKMMDEMGRKGLKLDT 456
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 4/178 (2%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-L 144
+E+ + +I Y + + AL++++EM + T+ ++NT++ + GK D+ D L
Sbjct: 490 DEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKL 549
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+++EK + PD + NI++HG +E A++ ++M++ L+P + T L+ GLC E
Sbjct: 550 NELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCRE 609
Query: 205 LRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ L L + KP D + +I C L A EM +E D
Sbjct: 610 GMLEKGLTLFNTW--ISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPD 665
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP LA+ + + K P L Q+F + + L+ FR NLL + ++ L R+
Sbjct: 138 KPLLDTSLAAYV-ISKQPHLGHQIFN---------KMKRLR-FRPNLLTCNTLLNALVRS 186
Query: 65 KMFDEV--QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+ + + Q V P F +I Y E AL++ ++M +
Sbjct: 187 NSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDN 246
Query: 123 KSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
++NT+L A+ ++ ++ DL Q+ + P+ +YNIL+HG + L++A +V +
Sbjct: 247 VTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIEL 306
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
M + + P + T+ T++ GLC E ++DEA++L+ D M + + PD + +LI G
Sbjct: 307 MTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLR-DKMESFKLVPDVVTYNTLIDG 360
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 105/207 (50%), Gaps = 5/207 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L DE ++ +++ ++VP+ + + +I R + A ++ +EM
Sbjct: 319 YNTMVRGLCDEGKIDEAVRLRDKME-SFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEM 377
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V+ + N ++ T GKID ++ + +++E SPD +YN +++G + ++
Sbjct: 378 KARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKM 437
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK-EDMMRVYNVKPDAQVFA 231
+A+K+ DEM ++ L+ T TL++ +CLE ++D+A L + R Y + D +
Sbjct: 438 AEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYIL--DEVTYG 495
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+LI G + AL EEM I
Sbjct: 496 TLIMGYFKDEQADRALKLWEEMKETGI 522
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 12/222 (5%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ II L + D+ L++L + +VP+E +I Y +E A Q
Sbjct: 526 IITYNTIIRGLCLSGKTDQAVDKLNELL-EKGLVPDESTSNIIIHGYCWEGAVEKAFQFH 584
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVS 169
++M +++ + + N LL + G +++ LF P D +YNI++
Sbjct: 585 NKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKE 644
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRVYNV 223
RRLEDA+ + EM + L+P T+ ++ GL R +EA KL K ++ +
Sbjct: 645 RRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDT 704
Query: 224 KPD----AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ +++ I LC G+ A+ ++ + + ++
Sbjct: 705 SPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLN 746
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 27/260 (10%)
Query: 10 FRLASLLRLQKDPKLA----LQLFKNPNPNPNNTEA--QPLKPFRYNLLHYDLIITKLGR 63
F +A+ L +DP A ++ + P+P+ + E K F + + +DL++ L
Sbjct: 151 FAVAAHLAAVRDPGAARAILVRALRFPSPHRHFVEQFISTYKAFSSDPVSFDLLLLCLPS 210
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFNVQRTV 122
A + ++Q + PE CN + RL L+ A+Q+F E+ ++
Sbjct: 211 APLLLRLRQ------YGISPSPES---CNAV----LCRLPLDEAVQLFQELP----EKNT 253
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N LL A+ T G+I LF M PD +Y I++HG LE A K+ EM
Sbjct: 254 CSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
R L+ V + ++I LC E +V +A+++ EDM+ ++ V DA VF +++ G C G+
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV-MHGVVLDAAVFTTVMSGFCRKGD 370
Query: 243 LSLALGFKEEMVRNKIEMDA 262
L+ A + +EM + + D
Sbjct: 371 LAAARNWFDEMQKRGLAADG 390
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IM 148
+ ++I+ +A LE A++ +M ++ V ++ T++ A+ ++DR L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+K + P +YN+LM+G +S R+E ++ + ML++ + P T+ +L+ C+E +
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ + M+ V P+ + LIKG C + AL F EM+ + A
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y +I L ++ D V+ + + H VV + +F V+S + R L A
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG--VVLDAAVFTTVMSGFCRKGDLAAARN 376
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
FDEM + ++ L+N + G++ + Q ME K + DA +Y +L+ G
Sbjct: 377 WFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYC 436
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ +A+ V ++M+++R+ P +VT+ L GLC + V A +L +M ++ +
Sbjct: 437 KVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS-KGLELNI 495
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLC G L E+ +R I+MD
Sbjct: 496 FTYNSLINGLCKAGNL-------EQAMRTMIDMD 522
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
++H RV P + + + + + A ++ EM S ++ + ++N+L+N +
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 133 LTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G +++ M + + E + PD +Y ++ S+ L+ A + EML + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
VT+ L+ G C+ RV+ +L E M+ N+ P+ + SL+K C
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYC 611
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y II L ++K D +L ++ D + P + + +++ + + +
Sbjct: 526 LKPDVYT---YTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
E ++ + M N+ ++N+L+ + T++++ ++ + V P+ +YNIL
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-Y 221
+ G +R +++A EM+++ + T ++ LI L + + EA +L E M +
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701
Query: 222 NVKPDAQVF 230
+PD F
Sbjct: 702 TAEPDVYNF 710
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
K R N++ Y ++ L + + + ++L + ++ P I + ++ +F ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A ++F+EM ++ + ++++L+N + +ID +F +M K D SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++R+ED K+F EM +R L VT+ TLI G VD+A + M +
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM-DFFG 395
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + L+ GLC GEL AL E+M + ++++D
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L DE Q + L + + + + +I+ + +A+ +E +++
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EMS + ++NTL+ G +D+ + F M+ + +SPD +YNIL+ G
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F++M KR + +VT+ T+I G+C +V+EA L + + +KPD
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIV 471
Query: 229 VFASLIKGLCAVGEL 243
+ +++ GLC G L
Sbjct: 472 TYTTMMSGLCTKGLL 486
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++++ + R + A+ + D+M + + ++N +++++ +++ D
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ +E K + P+ +Y L++G S R DA ++ +M+K+++ P ++T+ L+
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+V EA +L E+M+R+ ++ PD ++SLI GLC
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLC 306
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P+ + + +I + + + A F E+ ++ V ++ L+N + + D
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++K ++P+ +Y+ L+ V + ++ +A ++F+EM++ + P +VT+ +LI GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R+DEA ++ D+M D + +LI G C + + EM
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 20 KDPKL--ALQLFKN---PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+D KL A+ LF + P P+ + L L YD++I+ LG+ KM EV I
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVIS-LGK-KM--EVLGIR 117
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ L + +V C +S AL + +M + + +L+N
Sbjct: 118 NDL-YTFNIVINCFCCCFQVSL---------ALSILGKMLKLGYEPDRVTIGSLVNGFC- 166
Query: 135 CGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +R++D +++K V PD +YN ++ ++R+ DA+ F E+ ++ ++P
Sbjct: 167 --RRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ L+ GLC R +A +L DM++ + P+ +++L+ G++ A
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELF 283
Query: 251 EEMVRNKIEMD 261
EEMVR I+ D
Sbjct: 284 EEMVRMSIDPD 294
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK ++ ++ ++ +V + + +I + +A ++ A +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQ-RGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M F + + ++N LL + G++++ +F+ M+K + D +Y ++ G
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLK---EDMMRVYNV 223
+ ++E+AW +F + + L+P +VT+ T++ GLC + L EAL K E +M+
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507
Query: 224 KPDAQVF--ASLIKGLCAVG 241
D + A LIK + + G
Sbjct: 508 LSDGDITLSAELIKKMLSCG 527
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 37/223 (16%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH L D V PE F ++ R+ L A VFDEM VQ TV +FNTL++ M
Sbjct: 231 LHLL--DAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMC 288
Query: 134 TCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ L +M K ++PD +Y + G + R++DA ++F+EM +R L P V
Sbjct: 289 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 348
Query: 193 TFGTLIYGLCLELRVDEALKLKEDM----------------------------------M 218
TLI C E V L+L+ +M M
Sbjct: 349 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 408
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R +KPD + +LI G C GEL A+ K+EM + +D
Sbjct: 409 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 451
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L L + P+ + I + ++ A+++F+EM + TL++A
Sbjct: 299 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 358
Query: 134 TCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G + +L +++ + V D +YN L++G R ++ A + +EM K L+P V
Sbjct: 359 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 418
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
T+ TLI G C E +D A+++K++M V D + +LI GL G
Sbjct: 419 TYTTLIDGCCKEGELDTAMEMKQEMSD-EGVALDDVTYTALISGLSKAG 466
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ +I + + + L++ EM++ V+ + ++N L+N + D+
Sbjct: 345 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 404
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M K + PD +Y L+ GC L+ A ++ EM + VT+ LI GL
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R +A ++ +MM ++PD + +I C G++ +EM
Sbjct: 465 AGRSVDAERILCEMMEA-GLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEM 513
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP + + Y +I + D ++ ++ D V +++ + +IS +A
Sbjct: 413 LKPDK---VTYTTLIDGCCKEGELDTAMEMKQEMS-DEGVALDDVTYTALISGLSKAGRS 468
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNIL 162
A ++ EM +Q ++ +++A G + L ++ K +P +YN++
Sbjct: 469 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVV 528
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M+G ++++A + + ML + P +T+ L+ G C +V + +LK
Sbjct: 529 MNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKS----AKG 584
Query: 223 VKPDAQVFASLI 234
+ D V+ SLI
Sbjct: 585 MVSDFGVYTSLI 596
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 113/215 (52%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+++I L + F++ + ++ + LK +V + +I Y +L AL
Sbjct: 268 NDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKV--SAYTYNPLIYGYFNKGMLAEALS 325
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ +EM TV ++N+ + + G++ D M L ++ + PD SYN L++G
Sbjct: 326 LQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYC 385
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L A+ +FDE+ L PT+VT+ TL+ GLC + ++ A +LK +M+ + PD
Sbjct: 386 RLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMIN-EGIAPDI 444
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ L+ G C +G LS+A F +EM+ +E+D+
Sbjct: 445 VTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDS 479
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEM 113
DL+I + M ++ + ++ +R+ P+ + CN I R + L+ A++V+ M
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMI-KSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTM 225
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
F ++ T+ ++NTLL++ GK+ + DL M++ +P+ +YN+L++G
Sbjct: 226 GEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEF 285
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + EMLK L+ + T+ LIYG + + EAL L+E+M+ + P + S
Sbjct: 286 EQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMV-LKGASPTVATYNS 344
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
I GLC +G +S A+ +M+ N +
Sbjct: 345 FIYGLCKLGRMSDAMQQLSDMLANNL 370
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 14/214 (6%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN Y L KLGR M D +QQ+ L ++ ++P+ + + +I Y R L A
Sbjct: 342 YNSFIYGL--CKLGR--MSDAMQQLSDMLANN--LLPDVVSYNTLIYGYCRLGNLMKAFL 395
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCV 167
+FDE+ S + T+ ++NTLL+ + G+++ L +++ + ++PD +Y IL++G
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVK 224
L A + FDEML L+ + T I G EL++ + A L+E+M+
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVG---ELKLGDTSRAFSLQEEML-AKGFP 511
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
PD ++ ++ GLC +G L A ++MV + +
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGV 545
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 106/205 (51%), Gaps = 5/205 (2%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNV 118
+G K+ D + Q + + P ++I NV+ G +L LE A ++ +M S V
Sbjct: 487 VGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVV-VDGLCKLGNLEEASELLQKMVSDGV 545
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
++ ++++A L G++ + ++F +++ K ++P +Y +L+HG RLE A+
Sbjct: 546 IPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFI 605
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
F EM ++ + P ++T+ +LI GLC R+D+A +M+ + P+ + LI
Sbjct: 606 YFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVE-KGIFPNKYSYTILINEN 664
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C +G AL ++M+ ++ D+
Sbjct: 665 CNMGNWQEALSLYKQMLDRGVQPDS 689
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 86/191 (45%), Gaps = 16/191 (8%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--------------TVKSFNTLLNAM 132
E +FC ++ + L+ A V + + + N+ R +VK + L+
Sbjct: 115 EFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVY 174
Query: 133 LTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+++ +F ++++ +SPD + N ++ + A +V+ M + ++PT+
Sbjct: 175 SKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTI 234
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
VT+ TL+ C +V + L L +M R P+ + LI GL GE A G
Sbjct: 235 VTYNTLLDSYCKGGKVQQGLDLLSEMQR-RGCAPNDVTYNVLINGLSKKGEFEQAKGLIG 293
Query: 252 EMVRNKIEMDA 262
EM++ +++ A
Sbjct: 294 EMLKTGLKVSA 304
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 39/191 (20%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS--------- 95
K F +L+ Y++++ L + +E ++L ++ D V+P+ + + ++I
Sbjct: 508 KGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDG-VIPDYVTYTSIIHAHLENGRLR 566
Query: 96 -----FY----------------------GRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
FY G+ RL E A F EM + V ++N+L
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRL-ERAFIYFSEMQEKGILPNVITYNSL 625
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N + ++D+ + F +++EK + P+ SY IL++ ++A ++ +ML R +
Sbjct: 626 INGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGV 685
Query: 188 QPTLVTFGTLI 198
QP T L+
Sbjct: 686 QPDSCTHSALL 696
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 3/206 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P F+ + + Y ++ L +K +D+V+++ ++ + +P E+ F +I F+ R +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGM 298
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
+E A+QV ++M+ N ++N++ G++D L M Y +PD SY
Sbjct: 299 VERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTT 358
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R +DA ++ +EM++ P VTF T I LC + +++A+ L E M +
Sbjct: 359 VLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSE-H 417
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ +L+ G C G + AL
Sbjct: 418 GCTVGVVTYNALVNGFCVQGHIDSAL 443
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 97/188 (51%), Gaps = 4/188 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L RA+ +D+ +++L+++ + P E+ F I + L+E A+ +
Sbjct: 352 DTISYTTVLKGLCRAERWDDAKELLNEMVRNN-CPPNEVTFNTFICILCQKGLIEQAIML 410
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
++MS V ++N L+N G ID +LF+ M P+ +Y L+ G +
Sbjct: 411 IEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNTITYTTLLTGLCNA 468
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RL+ A ++ EML+ P +VTF L+ C + ++EA++L E MM + P+
Sbjct: 469 ERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMME-HGCTPNLIT 527
Query: 230 FASLIKGL 237
+ +L+ G+
Sbjct: 528 YNTLLDGI 535
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 104/253 (41%), Gaps = 41/253 (16%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y + LI R ++ D + + L+ + P + + ++ R
Sbjct: 136 SMPVAPDAYT--YTPLIRVLCDRGRVADALSLLDDMLRRGCQ--PNVVTYTVLLEAMCRN 191
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
E A+ V DEM + + ++N ++N M G++D +L + Y PD SY
Sbjct: 192 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSY 251
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI--------------------- 198
L+ G S+R +D ++F EM+++ P VTF LI
Sbjct: 252 TTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTE 311
Query: 199 YG--------------LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+G +C + RVD+A KL DM Y PD + +++KGLC
Sbjct: 312 HGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGS-YGCNPDTISYTTVLKGLCRAERWD 370
Query: 245 LALGFKEEMVRNK 257
A EMVRN
Sbjct: 371 DAKELLNEMVRNN 383
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +++ A L+ A ++ EM + V +FN L++ G ++ +L
Sbjct: 453 PNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIEL 512
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q+ME +P+ +YN L+ G EDA ++ ++ + + P ++TF ++I L
Sbjct: 513 VEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSK 572
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E R++EA++L +++ ++P A V+ ++ GLC E+ A+ F MV N
Sbjct: 573 EDRIEEAVQLFH-VVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSN 624
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKY 151
+++ Y R L+ A ++ M V ++ L+ + G++ D ++ L ++ +
Sbjct: 117 LVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRG 173
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
P+ +Y +L+ + E A V DEM + P +VT+ +I G+C E RVD+A
Sbjct: 174 CQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 233
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+L + + Y +PD + +L+KGLCA
Sbjct: 234 ELL-NRLPSYGFQPDTVSYTTLLKGLCA 260
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 2/137 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ ++ + + ++ ++LH L V P+ I F ++I + +E A+Q+
Sbjct: 524 NLITYNTLLDGITKDCSSEDALELLHGLVSKG-VSPDVITFSSIIGILSKEDRIEEAVQL 582
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F + ++ +N +L + +ID D F M P+ +Y IL+ G
Sbjct: 583 FHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAH 642
Query: 169 SRRLEDAWKVFDEMLKR 185
L++A + + R
Sbjct: 643 EGLLKEAQDLLSVLCSR 659
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ + R F E ++I ++ VVP+ + F ++++ + R R L+ AL F +M
Sbjct: 74 YNTLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLMAVFSRNRHLDQALVYFRDM 132
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
F + + L++ G ++ + +++E+ D +YN +++G + L
Sbjct: 133 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 192
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA K+FDEM++R P TF TLI+G C + + +AL L M + N+KPD + +
Sbjct: 193 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQ-RNIKPDIVAYNT 251
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C VGE+ A + M+ KI
Sbjct: 252 LIDGFCKVGEMEKASELWDGMISRKI 277
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQ 146
+ + +I Y R LLE A ++ + M+ ++ ++ ++N ++N + G+ R L +
Sbjct: 2 VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIE 61
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++ +SPD +YN L+ +A ++F EML++ + P LV+F +L+
Sbjct: 62 MLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRH 121
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+AL DM + + + PD ++ L+ G C G + AL ++EM+ +D
Sbjct: 122 LDQALVYFRDMKK-FGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLD 175
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
V + I + +++ + ++L A ++FDEM +F TL++ G + +
Sbjct: 173 VLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALS 232
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF M ++ + PD +YN L+ G +E A +++D M+ R++ P +T+G LI C
Sbjct: 233 LFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYC 292
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V EA +L D+M +KP ++IKG C G+ S A F M+ + D
Sbjct: 293 SVGHVSEAFRL-WDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD 350
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
+ R N Y +I RA + D+ + + QL+ + + ++ CN + + RA+++
Sbjct: 533 RGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEG--LEYDLFICNALLGAFARAKMV 590
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
E A Q F+EM S V+ +FNTL+ A + D+ F+ M+K +S DA +YN L
Sbjct: 591 ERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNAL 650
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL----RVDEALKLKEDMM 218
+ C S E A+ +F+EM + LQPT+ TF LI G C +L R + L L M
Sbjct: 651 IDACSKSGMTELAFALFNEMRQAHLQPTIFTFNALI-GACTKLQDMRRATQVLML----M 705
Query: 219 RVYNVKPD 226
+ V PD
Sbjct: 706 HGFGVYPD 713
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 2/209 (0%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P N++ Y+ ++ +GRA D +L Q++ + V P+ + + ++ + + +
Sbjct: 463 PNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSL 522
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A V D M ++ + +L++A G D+ LF Q+ + + D N L+
Sbjct: 523 AYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLG 582
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++ +E A++ F+EM ++ +TF TLI D+A K E M+ N+
Sbjct: 583 AFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFE-TMKKSNIS 641
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
DA + +LI G LA EM
Sbjct: 642 ADATTYNALIDACSKSGMTELAFALFNEM 670
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 100/250 (40%), Gaps = 38/250 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I+ LG+ + ++ H++ + V P F + + A+++
Sbjct: 396 DVASYSILISCLGKCGASAQAIEMFHKMIRNG-VAPNAFTFSALFGALTDGAFFDQAMRL 454
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGC 166
F + +S+ + V +N +L + G+ID DL ME + V PD +Y ++ C
Sbjct: 455 FQMIRASYPNELNVVVYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDIC 514
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI---------------------YGLCLEL 205
+ + A+ V D M KR ++P + +LI GL +L
Sbjct: 515 AKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAEGLEYDL 574
Query: 206 RVDEAL-------KLKE------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ AL K+ E + MR V+ D F +LI E A E
Sbjct: 575 FICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFET 634
Query: 253 MVRNKIEMDA 262
M ++ I DA
Sbjct: 635 MKKSNISADA 644
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWK 177
R+ + N +L+A+ G+ L +I+E+ ++ D SY+IL+ A +
Sbjct: 359 RSTRQLNKILSALYKSGRAADALSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIE 418
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+F +M++ + P TF L L D+A++L + + Y + + V+ +++K +
Sbjct: 419 MFHKMIRNGVAPNAFTFSALFGALTDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKYV 478
Query: 238 CAVGELSLALGFKEEMVRNK 257
G + AL +M +N+
Sbjct: 479 GRAGRIDAALDLLGQMEQNR 498
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+L+I L K +E + ++ +++ + V P+ + + I+ Y R + AL +
Sbjct: 356 SVFTYNLLIHALFLEKRIEEAEDMIKEMR-EKGVEPDVVTYNIQINGYCRCGNAKKALSL 414
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
FDEM N++ TV+++ +L++ GK +RM++ + +K + PD +N L+ G
Sbjct: 415 FDEMVEKNIRPTVETYTSLIDVF---GKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDG 471
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
V+ ++ A+++ EM ++ P VTF TL+ G C E +V+EA KL D M+ +KP
Sbjct: 472 HCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLL-DEMKERGIKP 530
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D + +LI G G++ AL +EM+
Sbjct: 531 DHISYNTLISGYSKRGDMKDALEVFDEML 559
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L +DL+++ + + DE + L+ +K + ++P+ +++S + ++ A V++
Sbjct: 148 LVFDLLLSAYCQFRKPDEALECLNLMK-ENEIIPKTETCNSLLSLLLKLNKIKMAWFVYE 206
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
EM N++ ++ +FN ++N + GK + D ME Y V P+ +YN +++G +
Sbjct: 207 EMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRG 266
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ E A K+F M + L+P T+ + I LC E R++EA + ++ + P+A +
Sbjct: 267 KFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLES-GLVPNAVTY 325
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
+LI G C G+L A +++EM+ I
Sbjct: 326 NALIDGCCNKGDLDKAFAYRDEMMNRGI 353
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ +++ ++++I L R + + + + ++ V P + + VI+ Y E A
Sbjct: 213 IKSSIVTFNIMINILCREGKWKKAKDFIGHMEV-YGVKPNVVTYNTVINGYCLRGKFEAA 271
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
++F M N++ ++N+ ++ + +I+ + L +++E + P+A +YN L+ G
Sbjct: 272 SKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDG 331
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYN 222
C L+ A+ DEM+ R + ++ T+ LI+ L LE R++EA EDM MR
Sbjct: 332 CCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEA----EDMIKEMREKG 387
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
V+PD + I G C G AL +EMV I
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNI 423
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 16/224 (7%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y+ I++L + + +E +L +L ++ +VP + + +I L
Sbjct: 283 LKPDCYT---YNSFISRLCKERRIEEASGVLCKLL-ESGLVPNAVTYNALIDGCCNKGDL 338
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
+ A DEM + + +V ++N L++A+ +I+ D+ + M EK V PD +YNI
Sbjct: 339 DKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQ 398
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-----LKEDM 217
++G + A +FDEM+++ ++PT+ T+ +LI R+ EA + +KE M
Sbjct: 399 INGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD +F +LI G C G + A +EM K+ D
Sbjct: 459 L------PDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPD 496
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 5/195 (2%)
Query: 45 KPFRYNLLHYDLIITKLG-RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K R + Y +I G R +M + ++ +K ++P+ I+F +I + +
Sbjct: 421 KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG--MLPDIIMFNALIDGHCVNGNI 478
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
+ A Q+ EM + V +FNTL+ K++ L M E+ + PD SYN L
Sbjct: 479 DRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTL 538
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G ++DA +VFDEML PTL+T+ LI G D A +L + M+
Sbjct: 539 ISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLRE-MQSKG 597
Query: 223 VKPDAQVFASLIKGL 237
+ PD + +I+ +
Sbjct: 598 ITPDDSTYLYVIEAM 612
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 109 VFDEMS----SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
+F+E+S NV+ T+ F+ LL+A K D + +M E + P + N L+
Sbjct: 131 IFNELSLARNRLNVKTTL-VFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLL 189
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ +++ AW V++EM+K ++ ++VTF +I LC E + +A M VY V
Sbjct: 190 SLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFI-GHMEVYGV 248
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
KP+ + ++I G C G+ A
Sbjct: 249 KPNVVTYNTVINGYCLRGKFEAA 271
>gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
mitochondrial-like [Glycine max]
Length = 618
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 26/255 (10%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
++ L+ QK AL+ F+ + PN +Q Y +I KL + FD V
Sbjct: 38 HVSQLILDQKSASEALEYFRWASTVPNFVHSQST---------YRALIHKLCTFRRFDTV 88
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+Q+L ++ H P + IF +I GRAR+ ++V D + F+ ++K FN++L+
Sbjct: 89 KQLLDEMPHSLGAPPGDDIFITIIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILD 148
Query: 131 AMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
++ ID + ++ +M V D ++ ILM G ++ R+ + +K+ + R +
Sbjct: 149 VLVK-EDIDMAREFYRKSMMASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVA 207
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG------- 241
P V + TL++ LC +V A L +M P+ F LI G C G
Sbjct: 208 PNTVVYNTLLHALCRNGKVGRARNLMNEME-----DPNDVTFNILISGYCKEGNSVQALV 262
Query: 242 --ELSLALGFKEEMV 254
E S ++GF ++V
Sbjct: 263 LLEKSFSMGFVPDVV 277
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQ-ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + ++++I+ G K + VQ +L + VP+ + V+ A A +
Sbjct: 240 NDVTFNILIS--GYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAE 297
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
V + + S V ++NTL+ GK+ + ME K P+ +YN+L+ G
Sbjct: 298 VLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFS 357
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S L+ A +F++M ++ VTF TLI GLC E R+++ + E M
Sbjct: 358 ESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSEERIEDGFSILELM 407
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 47/228 (20%)
Query: 69 EVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+V+ LH LK + +P + +IS + + +L+ AL +F++M + ++ +F+
Sbjct: 326 KVKVGLHFLKQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFD 385
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-------YVSPDACSYNILMHGCV------------ 167
TL+ + + +I+ + ++ME+ ++SP YN +++G +
Sbjct: 386 TLIRGLCSEERIEDGFSILELMEESKEGSRGHISP----YNSIIYGLLKKNGFDESAEFL 441
Query: 168 ----------VSRRL-----------EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
V R L EDA +V+D+M+ P+++ + L++G +
Sbjct: 442 TKMGNLFPRAVDRSLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGN 501
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V EA++L +M+ N P F ++I G C G++ AL E++
Sbjct: 502 VREAVELMNEMI-ANNCFPIPSTFNAVITGFCRQGKVESALKLVEDIT 548
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
Q++++ P YN L+HG + +A ++ +EM+ P TF +I G C +
Sbjct: 476 QMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIANNCFPIPSTFNAVITGFCRQG 535
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+V+ ALKL ED+ P+ + ++ LI LC G+L A+ +MV I
Sbjct: 536 KVESALKLVEDIT-ARGCVPNTETYSPLIDVLCRNGDLQKAMQVFMQMVDKGI 587
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 24/217 (11%)
Query: 26 LQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRV 83
LQL K+ PN YN LLH K+GRA+ + +E++
Sbjct: 198 LQLIKSRGVAPNTV--------VYNTLLHALCRNGKVGRARNLMNEMED----------- 238
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P ++ F +IS Y + AL + ++ S V S +L + G+ +
Sbjct: 239 -PNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRTMEAAE 297
Query: 144 LFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ + +E D +YN L+ G + +++ +M + P + T+ LI G
Sbjct: 298 VLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFLKQMENKGCLPNVDTYNVLISGFS 357
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+D AL L DM + +K + F +LI+GLC+
Sbjct: 358 ESGMLDLALDLFNDM-KTDGIKWNFVTFDTLIRGLCS 393
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
K R N++ Y ++ L + + + ++L + ++ P I + ++ +F ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A ++F+EM ++ + ++++L+N + +ID +F +M K D SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++R+ED K+F EM +R L VT+ TLI G VD+A + M +
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM-DFFG 395
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + L+ GLC GEL AL E+M + ++++D
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 102/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L DE Q + L + + + + +I+ + +A+ +E +++
Sbjct: 294 DIVTYSSLVNGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EMS + ++NTL+ G +D+ + F M+ + +SPD +YNIL+ G
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F++M KR + +VT+ T+I G+C +V+EA L + + +KPD
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIV 471
Query: 229 VFASLIKGLCAVGEL 243
+ +++ GLC G L
Sbjct: 472 TYTTMMSGLCTKGLL 486
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++++ + R + A+ + D+M + + ++N +++++ +++ D
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ +E K + P+ +Y L++G S R DA ++ +M+K+++ P ++T+ L+
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+V EA +L E+M+R+ ++ PD ++SL+ GLC
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLVNGLC 306
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P+ + + +I + + + A F E+ ++ V ++ L+N + + D
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++K ++P+ +Y+ L+ V + ++ +A ++F+EM++ + P +VT+ +L+ GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCL 307
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R+DEA ++ D+M D + +LI G C + + EM
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 20 KDPKL--ALQLFKN---PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+D KL A+ LF + P P+ + L L YD++I+ LG+ KM EV I
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVIS-LGK-KM--EVLGIR 117
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ L + +V C +S AL + +M + + +L+N
Sbjct: 118 NDL-YTFNIVINCFCCCFQVSL---------ALSILGKMLKLGYEPDRVTIGSLVNGFC- 166
Query: 135 CGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +R++D +++K V PD +YN ++ ++R+ DA+ F E+ ++ ++P
Sbjct: 167 --RRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ L+ GLC R +A +L DM++ + P+ +++L+ G++ A
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELF 283
Query: 251 EEMVRNKIEMD 261
EEMVR I+ D
Sbjct: 284 EEMVRMSIDPD 294
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK ++ ++ ++ +V + + +I + +A ++ A +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQ-RGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M F + + ++N LL + G++++ +F+ M+K + D +Y ++ G
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLK---EDMMRVYNV 223
+ ++E+AW +F + + L+P +VT+ T++ GLC + L EAL K E +M+
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507
Query: 224 KPDAQVF--ASLIKGLCAVG 241
D + A LIK + + G
Sbjct: 508 LSDGDITLSAELIKKMLSCG 527
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 418
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD+M ++ TV +N+L+N G +DR L M K ++P A SY+ L+ G
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L ++ EM +R + TF LI G C + ++DEA +L + M+ NV P+
Sbjct: 479 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEV 537
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +I+G C VG + A ++MV ++ D
Sbjct: 538 TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPD 570
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
+E YN+L Y L K R + EV+ ++ + V +E+ + ++ +
Sbjct: 249 SEGVKASAVPYNVLMYGL--CKNMRVQEAVEVKNVMVNIG----VTADEVTYRTLVYGFC 302
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSP 154
R LE AL++ +M + + + +++ + K + + + F + K + P
Sbjct: 303 RMEELEMALRITHDMIRLGFVPSEANCSFMIDELR---KKELVEEAFSLACKLGDLGMVP 359
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +YN L+ + R +DA ++F EM R L+P VT+ LI+ LC +++AL L
Sbjct: 360 NVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF 419
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D MR +K + SLI G C G L A G MV+ +
Sbjct: 420 -DKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 462
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 100/218 (45%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + Y+ +I + D + +L + + + P + +I+ R L
Sbjct: 425 KGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG-LTPTAASYSPLIAGLCRNGDLS 483
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
+++ EM+ + +F L+N K+D LF ++++ V P+ ++N+++
Sbjct: 484 SCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMI 543
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + + A++++D+M++ L+P T+ +LI GLCL V +A + D+ Y V
Sbjct: 544 EGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAV 603
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + A L+ G G + +EM +++D
Sbjct: 604 LNNFSLTA-LLYGFFREGRFTETYHLWDEMAVRGVKLD 640
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ ++ L A + EM + NV ++N L+ T G +++ DL
Sbjct: 709 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 768
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + S+NIL+ G + ++++A + ++ + P +++ T+I+ LC
Sbjct: 769 HSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM 828
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++A +L +M+ +KPD + I+ GE ALG M+R+ ++
Sbjct: 829 GDINKAFELWNEML-YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQ 882
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 95/211 (45%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ +N + +I + K DE ++ ++ D+ V+P E+ F +I Y +
Sbjct: 495 RGIAWNNYTFTALINGFCKDKKMDEAARLFDKMI-DSNVIPNEVTFNVMIEGYCLVGNIR 553
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A Q++D+M ++ ++ +L++ + + + + +E Y + S L+
Sbjct: 554 KAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALL 613
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G R + + ++DEM R ++ LV+F ++Y + +++ L + M+ V
Sbjct: 614 YGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE-MKEQGV 672
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KPD + +I L + AL ++MV
Sbjct: 673 KPDDIFYTCMIDALSKEENMIQALNCWDQMV 703
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 3/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P++I + +I + + AL +D+M + L+N + G +
Sbjct: 672 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAE 731
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L +++ V P+ +YN + +E A + ML+ L ++V+F LI GL
Sbjct: 732 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSFNILIKGL 790
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ EA+ L + PD ++++I LC +G+++ A EM+ ++ D
Sbjct: 791 CKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 849
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+A ++ A+ + +++ S++T+++ + G I++ +L+ +++ K + PD
Sbjct: 792 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVV 851
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+YNI + C V + A ++ M++ +QP T+ L+ G+ L + +AL L
Sbjct: 852 AYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQALLL 907
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
+ R A +FD+M V + + A +D L ME + V A
Sbjct: 198 KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAV 257
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN+LM+G + R+++A +V + M+ + VT+ TL+YG C ++ AL++ DM
Sbjct: 258 PYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDM 317
Query: 218 MRVYNVKPDAQ 228
+R+ V +A
Sbjct: 318 IRLGFVPSEAN 328
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 6/216 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y +I+ L + + + L++ V+ + + F+ R
Sbjct: 567 LKPDNYT---YRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 623
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E ++DEM+ V+ + SF ++ A L ++ LF+ M E+ V PD Y +
Sbjct: 624 E-TYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 682
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + A +D+M+ P VT LI LC + A L ++M+ N
Sbjct: 683 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML-AGN 741
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
V P+ + + G++ A M++ +
Sbjct: 742 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 777
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + K D+ ILH+++ D P + + ++I + + A ++F+ M
Sbjct: 82 YTALLSGLWKEKRLDQALAILHEMR-DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHM 140
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM------------------------- 148
S ++ ++NTLL+ + GK++R LFQ M
Sbjct: 141 KSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDG 200
Query: 149 ------------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ SPD +Y IL+ G ++ AW+V EML P
Sbjct: 201 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 260
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
LVT+ +L++GLC RV +AL L DM P+ + +LI GLC VG + A
Sbjct: 261 LVTYNSLLHGLCRARRVSDALALMRDMT-CRGCTPNVVTYGTLIDGLCKVGRVKDACAML 319
Query: 251 EEMV 254
+M+
Sbjct: 320 ADMI 323
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 113/221 (51%), Gaps = 11/221 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARL 102
+KP +++ Y +I L R+ DE ++L +K +R P ++I + +I +A
Sbjct: 362 IKP---DVVTYSSVIYGLCRSNRLDEACRLLLYVK--SRGCPPDVILYSTLIDGLCKAGK 416
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNI 161
++ A +++ M+ V +++TL++ + G++D L M + +P + +YN
Sbjct: 417 VDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNS 476
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL----KEDM 217
L+ G L++A ++ +EM + P+ VT+ LI+G+C RVD A+ L K
Sbjct: 477 LIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARC 536
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ D ++SLI GLC G ++ AL + +EM+ N +
Sbjct: 537 VAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGV 577
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 10/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++I L +AK + + ++ + +V + +I+ ++S + + L+ AL +
Sbjct: 43 NVFLCSILIDGLCKAKRSIDALRCFRAMQG-SGIVADTVIYTALLSGLWKEKRLDQALAI 101
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + V ++N+L++ + + DR +LF+ M+ SP +YN L+ G
Sbjct: 102 LHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFR 161
Query: 169 SRRLEDAWKVFDEMLKR-------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+ +LE A +F EML R R P ++T+ LI GLC RV +A++L E M+
Sbjct: 162 TGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLES-MKAR 220
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + L+ GLC +++ A EM+
Sbjct: 221 GCSPDVITYTILVDGLCKESKVAAAWEVLREML 253
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 110/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ L + ++L ++ D VP + + +++ RAR + AL +
Sbjct: 225 DVITYTILVDGLCKESKVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCRARRVSDALAL 283
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M+ V ++ TL++ + G++ D L +++K +PD YN+L++G
Sbjct: 284 MRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCK 343
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++++ + + ++P +VT+ ++IYGLC R+DEA +L ++ PD
Sbjct: 344 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YVKSRGCPPDVI 402
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++++LI GLC G++ A E M + + D
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTD 143
P+ + ++ + R ++ A + FDEM S N+ V + L++ + + ID +
Sbjct: 7 PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ + D Y L+ G +RL+ A + EM +P +VT+ +LI GLC
Sbjct: 67 FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV-RNKIEMD 261
D A +L E M V P + +L+ GL G+L A+ +EM+ R +MD
Sbjct: 127 NNEPDRAQELFEHMKSV-ECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 7/158 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L +A DE +L ++ P + + ++I L+ A+++
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARMVR-MGTPPSTMTYNSLIKGLCDLNHLDEAIEL 493
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ------IMEKYVSPDACSYNILM 163
+EM N + ++N L++ M ++D L + + + D +Y+ L+
Sbjct: 494 VEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLI 553
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
G + R+ +A F EM+ + P +T+ L+ GL
Sbjct: 554 DGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGL 591
>gi|18398767|ref|NP_565439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216725|sp|Q9ZU67.1|PP162_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g18520, mitochondrial; Flags: Precursor
gi|4218007|gb|AAD12215.1| expressed protein [Arabidopsis thaliana]
gi|21617890|gb|AAM66940.1| membrane-associated salt-inducible protein like [Arabidopsis
thaliana]
gi|330251683|gb|AEC06777.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 418
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 28/235 (11%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+KAK S LR +DP AL ++K+ + N PL RY + +L + +
Sbjct: 33 MSKAK--------SKLRKVQDPDKALAIYKSVS----NNSTSPLSS-RYAM---ELTVQR 76
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L +++ F +++ ++ K++ ++ E +I YGRA + +HA+++F+EM R
Sbjct: 77 LAKSQRFSDIEALIESHKNNPKI-KTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPR 135
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWK 177
TV SFN LL A L +R+ LF + ++Y ++PD SY +L+ S + E A +
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAME 195
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
+ +M + ++ T++ F T++ L VDEA L +M+ VYNV+
Sbjct: 196 IMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVR 250
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++ ++ ++ + +F+ V Q+ + + + P++I + +I Y + E A++
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAME 195
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----------------------- 145
+ +M V+ T+ +F T+L ++ G +D L+
Sbjct: 196 IMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAA 255
Query: 146 --------QIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ME+ S PD SYN LM V + +A KV++ + QP T
Sbjct: 256 KESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLE----QPNAAT 311
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
F TLI+ LC+ D+ L + + V+ + PD + L +GL + A G
Sbjct: 312 FRTLIFHLCINGLYDQGLTVFKKSAIVHKI-PDFKTCKHLTEGLVKNNRMEDARG 365
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 133 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +L+DA ++FDEML L P V+F TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C + RVD A+++ + M+ ++ PD + +LI GLC G+L A EM ++
Sbjct: 250 GHCKDGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKLDDANELFDEML-DNGLVPNSVSFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRD 410
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L A+L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKAILRRGRYMMAKRYFNKMLSEGIEPARHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEARSILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCNSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDI 357
>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
Length = 495
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL---KHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+LL Y+ ++ RA ++ +L ++ K + VVP+ + VIS + +AR L A
Sbjct: 175 SLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA 234
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
V M V +FNTLL+ + GK+D +F+ M E+ P A +Y +L+ G
Sbjct: 235 RYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITG 294
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R++ A F +ML+R ++P + T+ LI GLC +V++AL++ + M +P
Sbjct: 295 HARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSST-GREP 353
Query: 226 DAQVFASLIKGLCAVGELSLA 246
+ + +I LC G++ A
Sbjct: 354 NVVTYTRVIGALCKGGQIERA 374
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 115/240 (47%), Gaps = 13/240 (5%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
K PKLA ++FK A + F++ + Y+ + L + + ++I + +
Sbjct: 15 KSPKLASRVFK---------WAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLY 65
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+P + V+ + AL++ +M S + T N L++ + GK+D
Sbjct: 66 K-ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVD 124
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+L++ + S D SYN+L +G + +++ A VF EM + + P+L+T+ L+Y
Sbjct: 125 AAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLY 184
Query: 200 GLCLELRVDEALKLKEDMM---RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
G C R+++A+ L E+M+ + +V PD + ++I G C +L A M+++
Sbjct: 185 GYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKS 244
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 97 YG--RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKY-- 151
YG +A ++ AL VF EM V ++ ++N LL G++++ MT L +++E
Sbjct: 149 YGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKG 208
Query: 152 --VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
V PD SYN ++ G +R+L A V M+K P +VTF TL+ GLCL ++DE
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
A + E M+ N +P A + LI G + A + +M+R +E
Sbjct: 269 ANAMFEYMVE-RNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVE 317
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 15/260 (5%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P +P +L LL L D ++ LF+ +A + + ++ Y L+I KLG
Sbjct: 58 PITPSQLCKLLELPLDVPTSMDLFE---------KAGLQRGYIHSFHVYYLLIDKLGNVG 108
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF-DEMSSFNVQRTVKS 124
F + ++L Q+K D V +E +F ++ +YG+A L A ++ D + + T KS
Sbjct: 109 EFKMIDKLLKQMK-DEGCVFKESLFILIMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKS 167
Query: 125 FNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+N +L +L G ++ + ++ + +SP ++ ++M + ++ A + +M
Sbjct: 168 YNVVLE-ILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDM 226
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
K P + + LI+ L RV+EA+KL E+M + +PD Q F +I GLC G
Sbjct: 227 TKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMF-LMGCEPDVQTFNDVIHGLCKAGR 285
Query: 243 LSLALGFKEEMVRNKIEMDA 262
+ A + M+ DA
Sbjct: 286 IHEAAKLHDRMLLRDFTADA 305
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 111/284 (39%), Gaps = 50/284 (17%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
+ + L R+ K + L K PNPN YN L +++ GR F+E
Sbjct: 310 YLMHGLCRMGKVDEARAMLSKIPNPNT----------VLYNTLINGYVVS--GR---FEE 354
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
+ +L++ P+ F +I + L AL+ DEM + V ++ L+
Sbjct: 355 AKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILI 414
Query: 130 NAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G + + + M K +S + YN L+ +++DA +++ EM + +
Sbjct: 415 DGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCK 474
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDM------------------------------- 217
P + TF +LIYGLC +++EAL L DM
Sbjct: 475 PDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKL 534
Query: 218 ---MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
MR D + LIK LC G LG E+M +I
Sbjct: 535 VGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEI 578
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 66 MFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
M +EV L+ T+ VP II+ +I + A+++ +EM + V+
Sbjct: 212 MVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQ 271
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +++ + G+I L +++ + + DA LMHG ++++A M
Sbjct: 272 TFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEA----RAM 327
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + P V + TLI G + R +EA L M + +PDA F +I GLC G
Sbjct: 328 LSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGY 387
Query: 243 LSLALGFKEEMVRNKIE 259
L AL F +EMV+ E
Sbjct: 388 LVSALEFLDEMVKKGFE 404
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+ + + +I + R L++ A ++ EM ++N L+ A+ G ++
Sbjct: 508 VIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCL 567
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L Q+ + + P S NIL++ + ++ DA + +M++R L P +VT+ +LI GL
Sbjct: 568 GLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGL 627
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
C R EAL L ++ + PDA + +LI C G
Sbjct: 628 CKMGRFQEALNLFNG-LQAKGIHPDAVTYNTLISRYCYEG 666
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 106/254 (41%), Gaps = 38/254 (14%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N++ Y ++I + F+E ++++ + + C +I + ++
Sbjct: 401 KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNC-LIGALCKDGKIQ 459
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
ALQ++ EMSS + + +FN+L+ + K++ L++ ++ + V + +YN L+
Sbjct: 460 DALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLI 519
Query: 164 H---------------------GCVV--------------SRRLEDAWKVFDEMLKRRLQ 188
H GC + + E + ++M +
Sbjct: 520 HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIF 579
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P++ + LI C +V++AL+ DM++ + PD + SLI GLC +G AL
Sbjct: 580 PSINSCNILINSFCRTGKVNDALQFLRDMIQ-RGLTPDIVTYNSLINGLCKMGRFQEALN 638
Query: 249 FKEEMVRNKIEMDA 262
+ I DA
Sbjct: 639 LFNGLQAKGIHPDA 652
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQ 108
N + Y+ +I R ++ + +++ +++ R P + I + +I + E L
Sbjct: 511 NTVTYNTLIHAFLRLELIQQADKLVGEMRF--RGCPLDNITYNGLIKALCKTGATEKCLG 568
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ ++M + ++ S N L+N+ GK+ D + L ++++ ++PD +YN L++G
Sbjct: 569 LIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLC 628
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
R ++A +F+ + + + P VT+ TLI C E ++A +L
Sbjct: 629 KMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQL 674
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVF 110
+ Y+ +I L + ++ ++ Q+ + P I CN+ I+ + R + ALQ
Sbjct: 548 ITYNGLIKALCKTGATEKCLGLIEQM-FGEEIFPS-INSCNILINSFCRTGKVNDALQFL 605
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVS 169
+M + + ++N+L+N + G+ +LF ++ K + PDA +YN L+
Sbjct: 606 RDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYE 665
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DA ++ + + P +T+ LI
Sbjct: 666 GLFNDACQLLFKGVSNGFIPNEITWSILI 694
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I KL + + FD+ ++ ++ + P E+ + +I + ++E AL +
Sbjct: 337 NVFAYNALIDKLCKNERFDDADRLFKEMA-GRGLEPNEVTYAILIHALCKRGMIEDALCL 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD+M ++ TV +N+L+N G +DR L M K ++P A SY+ L+ G
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L ++ EM +R + TF LI G C + ++DEA +L + M+ NV P+
Sbjct: 456 NGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDS-NVIPNEV 514
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +I+G C VG + A ++MV ++ D
Sbjct: 515 TFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPD 547
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 14/214 (6%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN+L Y L K R + EV+ ++ + V +E+ + ++ + R LE AL+
Sbjct: 236 YNVLMYGL--CKNMRVQEAVEVKNVMVNIG----VTADEVTYRTLVYGFCRMEELEMALR 289
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMH 164
+ +M + + + +++ + K + + + F + K + P+ +YN L+
Sbjct: 290 ITHDMIRLGFVPSEANCSFMIDELR---KKELVEEAFSLACKLGDLGMVPNVFAYNALID 346
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ R +DA ++F EM R L+P VT+ LI+ LC +++AL L D MR +K
Sbjct: 347 KLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLF-DKMRDKGIK 405
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ SLI G C G L A G MV+ +
Sbjct: 406 VTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGL 439
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 100/218 (45%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + Y+ +I + D + +L + + + P + +I+ R L
Sbjct: 402 KGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEG-LTPTAASYSPLIAGLCRNGDLS 460
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
+++ EM+ + +F L+N K+D LF ++++ V P+ ++N+++
Sbjct: 461 SCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMI 520
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + + A++++D+M++ L+P T+ +LI GLCL V +A + D+ Y V
Sbjct: 521 EGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAV 580
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + A L+ G G + +EM +++D
Sbjct: 581 LNNFSLTA-LLYGFFREGRFTETYHLWDEMAVRGVKLD 617
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 1/175 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ ++ L A + EM + NV ++N L+ T G +++ DL
Sbjct: 686 PNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL 745
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + S+NIL+ G + ++++A + ++ + P +++ T+I+ LC
Sbjct: 746 HSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKM 805
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++A +L +M+ +KPD + I+ GE ALG M+R+ ++
Sbjct: 806 GDINKAFELWNEML-YKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQ 859
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 3/207 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N + +I + K DE ++ ++ D+ V+P E+ F +I Y + A Q
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARLFDKMI-DSNVIPNEVTFNVMIEGYCLVGNIRKAFQ 534
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
++D+M ++ ++ +L++ + + + + +E Y + S L++G
Sbjct: 535 LYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFF 594
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R + + ++DEM R ++ LV+F ++Y + +++ L + M+ VKPD
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFRE-MKEQGVKPDD 653
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +I L + AL ++MV
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMV 680
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 3/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P++I + +I + + AL +D+M + L+N + G +
Sbjct: 649 VKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAE 708
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L +++ V P+ +YN + +E A + ML+ L ++V+F LI GL
Sbjct: 709 LLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL-ASIVSFNILIKGL 767
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ EA+ L + PD ++++I LC +G+++ A EM+ ++ D
Sbjct: 768 CKAGKIQEAIDLMSKITES-GFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPD 826
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+A ++ A+ + +++ S++T+++ + G I++ +L+ +++ K + PD
Sbjct: 769 KAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVV 828
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+YNI + C V + A ++ M++ +QP T+ L+ G+ L L D
Sbjct: 829 AYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYD 879
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
+ R A +FD+M V + + A +D L ME + V A
Sbjct: 175 KIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAV 234
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN+LM+G + R+++A +V + M+ + VT+ TL+YG C ++ AL++ DM
Sbjct: 235 PYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDM 294
Query: 218 MRVYNVKPDAQ 228
+R+ V +A
Sbjct: 295 IRLGFVPSEAN 305
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 6/216 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y +I+ L + + + L++ V+ + + F+ R
Sbjct: 544 LKPDNYT---YRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFT 600
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E ++DEM+ V+ + SF ++ A L ++ LF+ M E+ V PD Y +
Sbjct: 601 E-TYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + A +D+M+ P VT LI LC + A L ++M+ N
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEML-AGN 718
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
V P+ + + G++ A M++ +
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHL 754
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 42/216 (19%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMR--------VYN--------------------------VKP 225
G C RVD A+++ + M+ YN +KP
Sbjct: 250 GHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKP 309
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI G C G+L A +++ M++ I +D
Sbjct: 310 DKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLD 345
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 6/191 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SS 115
+I + F + Q+ ++K + RV E+ F V YG+A L E A+++F M
Sbjct: 86 LIENYANSGDFGTLFQVFDRMKRERRVFIEKN-FILVFRAYGKAHLPEKAIELFGRMVDE 144
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGCVVSRRL 172
F +RTV+SFN++LN ++ G R + ++ + +SP+ S+N+++ +
Sbjct: 145 FQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLV 204
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A +VF EM ++ +P + T+ TL+ GLC E R+DEA+ L D M++ P + F
Sbjct: 205 DRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLL-DEMQIEGCFPSSVTFNV 263
Query: 233 LIKGLCAVGEL 243
LI GLC G++
Sbjct: 264 LINGLCKKGDM 274
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMT 142
VP E+ + +I+ L+ A+ + D M + ++ TL+N ++ G+ +D +
Sbjct: 290 VPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVH 349
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + E+ + +Y+ L+ G + E+A ++ +M+++ QP +V + LI GLC
Sbjct: 350 LLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLC 409
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E ++DEA ++ +M+ P+A ++SLIKG G A+ +EM +N
Sbjct: 410 REGKLDEAKEILCEMVN-KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKN 462
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +I+ L + + +E + ++ + P +++ +I R L+ A ++
Sbjct: 362 NEYAYSTLISGLFKEEKSEEAMGLWKKMV-EKGCQPNIVVYSALIDGLCREGKLDEAKEI 420
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + ++++L+ G + +++ M K P+ Y++L+HG
Sbjct: 421 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE 480
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDA 227
+L +A ++ ML R L+P +V + ++I+GLC V+ LKL +M+ + + +PD
Sbjct: 481 DGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDV 540
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L++ LC +S A+ M+
Sbjct: 541 VTYNILLRALCKQNSISHAIDLLNSML 567
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
T + P + F VI + L++ A++VF EM+ + V ++ TL++ + +ID
Sbjct: 182 TNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDE 241
Query: 141 MTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ + P + ++N+L++G + K+ D M + P VT+ T+I
Sbjct: 242 AVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIIN 301
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
GLCL+ ++D+A+ L + M+ V P+ + +LI GL G
Sbjct: 302 GLCLKGKLDKAVSLLDRMVASKCV-PNDVTYGTLINGLVKQG 342
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 25/179 (13%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP EI + +I L A+ ++ M ++ V +++++++ + G ++
Sbjct: 465 VPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLK 524
Query: 144 LFQIM---EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF M E PD +YNIL+ + A + + ML R P L+T +
Sbjct: 525 LFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 584
Query: 201 LCLEL---------------------RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L +L R+ A K+ E M++ + + P+A + +I LC
Sbjct: 585 LREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKF-LPPNASTWERIIPELC 642
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 126/238 (52%), Gaps = 12/238 (5%)
Query: 35 NPNNTEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVP 85
+ +NT L+ FR+ NL ++ II LGRA + + IL + +
Sbjct: 20 HSSNTXEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEW 78
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+E ++ +I YG+ +++ ++++F +M V+RT+KS+N L +L G+ F
Sbjct: 79 DEDMWVMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKVILRRGRYMMAKRYF 138
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+++ + + P ++N+++ G +S ++E A + F++M R + P +VT+ T+I G
Sbjct: 139 NKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+++EA K + M+ N++P + +LIKG +V ++ AL ZEM I+ +A
Sbjct: 199 KKMEEAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNA 255
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 95/204 (46%), Gaps = 14/204 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + P + + +I Y ++ AL++
Sbjct: 184 DVVTYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM ++ +++TLL + K+ J ++M+KY++P D + L+
Sbjct: 243 VZEMKGXGIKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXSHC 302
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR-- 219
S L+ A V M++ + G LI C + D+A+KL K+ ++R
Sbjct: 303 KSGNLDAAADVLKAMIRLSVPTEAGHXGXLIENFCKVGQYDKAVKLLDKLIEKDIILRPQ 362
Query: 220 -VYNVKPDAQVFASLIKGLCAVGE 242
+++P A + +I+ LC G+
Sbjct: 363 STLHLEPSA--YNPMIEYLCNNGQ 384
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 62 GRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
G K+ + Q + L+Q +VP+ + F +I + ++ A +F M F+V
Sbjct: 261 GYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTP 320
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
+ +N+L++A G + LF +E++ VSPD +Y+IL+ G R E+A +F
Sbjct: 321 NIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIF 380
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
++M K + VT+ +LI G C E ++D+AL++ M V+P+ F++LI G C
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTE-NGVEPNVITFSTLIDGYCK 439
Query: 240 VGELSLALGFKEEMVRNKIEMD 261
+ L A+G EMV + D
Sbjct: 440 IRNLQAAMGIYSEMVIKSLSPD 461
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+L Y ++ K GR F+ + +I ++ + + P I F +I R L A ++
Sbjct: 151 NVLLY--VLVKTGR---FELLWRIYEEMISNG-LSPSVITFGTLIDGCCRQGDLLRAQEM 204
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FDEM + TV + L+ + + KI+ + + M E V P+ +YN LM G
Sbjct: 205 FDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCK 264
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A +++ +ML L P +VTFG LI GLC + A L +M++ ++V P+
Sbjct: 265 LANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK-FSVTPNIA 323
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+ SLI C VG++S A+ E+ R ++ D
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPD 356
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
E A +F++M+ + ++N+L++ GK+D+ ++ Q+ E V P+ +++ L
Sbjct: 374 EEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTL 433
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G R L+ A ++ EM+ + L P +VT+ +I G C + EALKL DM+
Sbjct: 434 IDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLD-NG 492
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ P+ + L+ GLC G++S AL E+ KIE
Sbjct: 493 ITPNCYTISCLLDGLCKDGKISDAL----ELFTEKIE 525
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 105 HALQV-FDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
HA Q+ F E+S + T + L+ + ++ ++ + ++ AC N+L
Sbjct: 96 HACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQAC--NVL 153
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
++ V + R E W++++EM+ L P+++TFGTLI G C R + L+ +E D MRV
Sbjct: 154 LYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCC---RQGDLLRAQEMFDEMRV 210
Query: 221 YNVKPDAQVFASLIKGLCA 239
+ P V+ LI+GLC+
Sbjct: 211 KGIVPTVIVYTILIRGLCS 229
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-I 147
++ +I + L+E AL ++ ++ + T+++ N LL ++ G+ + + +++ +
Sbjct: 117 VYGELIIVLCKMELVEEALSMYHKVGA---ALTIQACNVLLYVLVKTGRFELLWRIYEEM 173
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ +SP ++ L+ GC L A ++FDEM + + PT++ + LI GLC + ++
Sbjct: 174 ISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKI 233
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+EA + M V V P+ + +L+ G C + AL ++M+
Sbjct: 234 EEAESMHRAMREV-GVYPNVYTYNTLMDGYCKLANAKQALRLYQDML 279
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 19/160 (11%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + + ++ AL+++ +M + + + LL+ + GKI +L
Sbjct: 460 PDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALEL 519
Query: 145 FQIMEKYVSP----DA----------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
F ++ +P DA +Y L+HG + A K+F +M + LQP
Sbjct: 520 FTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPD 579
Query: 191 LVTFGTLIYGLCLELRVDEAL-KLKEDMMRVYNVKPDAQV 229
V + ++ GL +V L L DM++ + V P++ V
Sbjct: 580 EVIYVVMLRGL---FQVKYILMMLHADMLK-FGVIPNSAV 615
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 27/260 (10%)
Query: 10 FRLASLLRLQKDPKLA----LQLFKNPNPNPNNTEA--QPLKPFRYNLLHYDLIITKLGR 63
F +A+ L +DP A ++ + P+P+ + E K F + + +DL++ L
Sbjct: 151 FAVAAHLAAVRDPGAARAILVRALRFPSPHRHFVEQFISTYKAFSSDPVSFDLLLLCLPS 210
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFNVQRTV 122
A + ++Q + PE CN + RL L+ A+Q+F E+ ++
Sbjct: 211 APLLLRLRQ------YGISPSPES---CNAV----LCRLPLDEAVQLFQELP----EKNT 253
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N LL A+ T G+I LF M PD +Y I++HG LE A K+ EM
Sbjct: 254 CSYNILLKALCTAGRIKDAHQLFDEMAS--PPDVVTYGIMVHGYCTLSELETAIKLLSEM 311
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
R L+ V + ++I LC E +V +A+++ EDM+ ++ V DA VF +++ G C G+
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMV-MHGVVLDAAVFTTVMSGFCRKGD 370
Query: 243 LSLALGFKEEMVRNKIEMDA 262
L+ A + +EM + + D
Sbjct: 371 LAAARNWFDEMQKRGLAADG 390
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IM 148
+ ++I+ +A LE A++ +M ++ V ++ T++ A+ ++DR L Q ++
Sbjct: 498 YNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEML 557
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+K + P +YN+LM+G +S R+E ++ + ML++ + P T+ +L+ C+E +
Sbjct: 558 DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMK 617
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ + M+ V P+ + LIKG C + AL F EM+ + A
Sbjct: 618 STTEIYKGMLS-QEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTA 670
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y +I L ++ D V+ + + H VV + +F V+S + R L A
Sbjct: 319 NPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG--VVLDAAVFTTVMSGFCRKGDLAAARN 376
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
FDEM + ++ L+N + G++ + Q ME K + DA +Y +L+ G
Sbjct: 377 WFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYC 436
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ +A+ V ++M+++R+ P +VT+ L GLC + V A +L +M ++ +
Sbjct: 437 KVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCS-KGLELNI 495
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLC G L E+ +R I+MD
Sbjct: 496 FTYNSLINGLCKAGNL-------EQAMRTMIDMD 522
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 84/167 (50%), Gaps = 2/167 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
++H RV P + + + + + A ++ EM S ++ + ++N+L+N +
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505
Query: 133 LTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G +++ M + + E + PD +Y ++ S+ L+ A + EML + ++PT+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
VT+ L+ G C+ RV+ +L E M+ N+ P+ + SL+K C
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLE-KNIHPNTTTYNSLMKQYC 611
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 90/189 (47%), Gaps = 6/189 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y II L ++K D +L ++ D + P + + +++ + + +
Sbjct: 526 LKPDVYT---YTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRV 581
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
E ++ + M N+ ++N+L+ + T++++ ++ + V P+ +YNIL
Sbjct: 582 EGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-Y 221
+ G +R +++A EM+++ + T ++ LI L + + EA +L E M +
Sbjct: 642 IKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701
Query: 222 NVKPDAQVF 230
+PD F
Sbjct: 702 TAEPDVYNF 710
>gi|357128605|ref|XP_003565962.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Brachypodium distachyon]
Length = 431
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 6/187 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++ +L RA++F + ++ +L+ +R P +F +I G A + AL VF + +
Sbjct: 61 VLYRLARARLFPILLPLISELR--SRRAPLRGTVFAALIDRLGAAARPDAALLVFRAVPA 118
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
F + +F+ LL+ + G++D DL K V P+A SYNI++ G
Sbjct: 119 F-CSHSNATFHALLHCFVCNGRLDAARDLLPRAAKLGVRPNAVSYNIILKGACERDGFVG 177
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A V DEML R ++PT+VTF TL+ C E + A +L+E+M+R V P+A ++ L+
Sbjct: 178 ARVVLDEMLGRGVRPTVVTFNTLVGAACQEGELGGAERLREEMVR-RGVTPNAVTYSLLM 236
Query: 235 KGLCAVG 241
+GLC G
Sbjct: 237 RGLCDAG 243
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 36/175 (20%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
V DEM V+ TV +FNTL+ A G++ L + M + V+P+A +Y++LM G
Sbjct: 181 VLDEMLGRGVRPTVVTFNTLVGAACQEGELGGAERLREEMVRRGVTPNAVTYSLLMRGLC 240
Query: 168 VSRRLEDAWKV-FD----------------------------------EMLKRRLQPTLV 192
+ R +DA K+ FD M KR+L+P
Sbjct: 241 DAGRHDDAKKMMFDMEYQGCQTEAVNYGVLMSAYARQGNIDGVRGLLSNMRKRKLKPDDA 300
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++ LI LC RV EA K +M P A + L G C+ + L L
Sbjct: 301 SYNVLIKCLCDNGRVVEAHKALVEMQVKEGTVPSAATYRVLADGCCSAQDFGLGL 355
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 6/199 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y L++ L A D+ ++++ +++ E + + ++S Y R ++ +
Sbjct: 228 NAVTYSLLMRGLCDAGRHDDAKKMMFDMEYQG-CQTEAVNYGVLMSAYARQGNIDGVRGL 286
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILMHGC 166
M ++ S+N L+ + G++ Q+ E V P A +Y +L GC
Sbjct: 287 LSNMRKRKLKPDDASYNVLIKCLCDNGRVVEAHKALVEMQVKEGTV-PSAATYRVLADGC 345
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++ +V + ML P TF L+ GL + + +EA + E M D
Sbjct: 346 CSAQDFGLGLRVLNAMLASGHCPLAHTFRHLVKGLSEDEKTEEACFVLEKMAE-SGAWMD 404
Query: 227 AQVFASLIKGLCAVGELSL 245
A+ + SL+ +C+ E+ L
Sbjct: 405 AEGWQSLVTCVCSGSEVKL 423
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 3/182 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + ++ A + A ++ +M Q ++ L++A G ID +
Sbjct: 225 VTPNAVTYSLLMRGLCDAGRHDDAKKMMFDMEYQGCQTEAVNYGVLMSAYARQGNIDGVR 284
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM-LKRRLQPTLVTFGTLIYG 200
L M K + PD SYN+L+ + R+ +A K EM +K P+ T+ L G
Sbjct: 285 GLLSNMRKRKLKPDDASYNVLIKCLCDNGRVVEAHKALVEMQVKEGTVPSAATYRVLADG 344
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C L++ M+ + P A F L+KGL + A E+M + M
Sbjct: 345 CCSAQDFGLGLRVLNAMLASGHC-PLAHTFRHLVKGLSEDEKTEEACFVLEKMAESGAWM 403
Query: 261 DA 262
DA
Sbjct: 404 DA 405
>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 855
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F E+ ++L ++ D P + + +I YGRA L+ A
Sbjct: 355 FKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKEA 413
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+ VF++M + ++ TL++ G +D D++Q M E +SPD +Y+++++
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A ++F EM+ + P LVTF +I + ALKL DM +P
Sbjct: 474 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQP 532
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D ++ +++ L G L A G EM R
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQR 562
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II LG+A ++ ++ P + F +I+ + +AR E AL+++ +M
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ Q +++ ++ + CG ++ +F M+ K PD Y +L+ + +
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNV 585
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ AW+ + ML+ L+P + T +L+ R+ EA L + M+ + + P Q + +
Sbjct: 586 DKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL-GLHPSLQTY-T 643
Query: 233 LIKGLCAVGELSLALGF 249
L+ C + +GF
Sbjct: 644 LLLSCCTDARSNFDMGF 660
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ VP+E ++ ++ +G+A ++ A
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKN-WVPDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNIL 162
Q + M ++ V + N+LL+ L ++ RM++ + +++ ++ P +Y +L
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFL---RVHRMSEAYNLLQSMLALGLHPSLQTYTLL 645
Query: 163 MHGCVVSR 170
+ C +R
Sbjct: 646 LSCCTDAR 653
>gi|242058297|ref|XP_002458294.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
gi|241930269|gb|EES03414.1| hypothetical protein SORBIDRAFT_03g030760 [Sorghum bicolor]
Length = 534
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 127/299 (42%), Gaps = 45/299 (15%)
Query: 1 MNKAKPTSPF--------RLASLLRLQKDPKLALQLF--------KNPNP-NPNNTEAQP 43
M A PT P L L+R ++DP+ AL +F P+P P+
Sbjct: 1 MPPANPTPPKWPKTLTADHLHRLVRAERDPRRALAIFDAATAASTSAPDPITPSPATVSL 60
Query: 44 LKPFRYNLLHYDLIITKLGRAK------------------MFDEVQQILHQLKHDTRVVP 85
L + H L + L R++ F + L L H R P
Sbjct: 61 LTSRLASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAAL-HLFRSAP 119
Query: 86 EEIIFCNVISFYGR--ARLLEH-----ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
++ + Y A L+ H A + +M + T ++N LL A +
Sbjct: 120 SDLALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAQCSDAAA 179
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D + D ++ PD CSYN ++ G RL A ++F EM+ + + PT+VT+ TLI
Sbjct: 180 D-IKDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLI 238
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ L E D+ALK+ ++M R V P+ ++SLI GLC G + AL + M++ K
Sbjct: 239 HWLAREGCFDDALKIFDEMGR-RGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEK 296
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I R L AL++F EM + TV ++ TL++ + G D +
Sbjct: 194 PDVCSYNTIIDGLCRRGRLAAALEMFSEMVGKCIAPTVVTYTTLIHWLAREGCFDDALKI 253
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M + VSP+ +Y+ L+ G R A ++ D M+K + P +T+ ++I GLC
Sbjct: 254 FDEMGRRGVSPNLVTYSSLIDGLCKGGRAASALELMDRMIKEKKLPNTITYSSVIDGLCK 313
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
E + EA+++ D MR+ KPDA +F LI GLC G A + +EM+ IE
Sbjct: 314 EHMLSEAMEVL-DRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMILAGIE 368
>gi|224114227|ref|XP_002316702.1| predicted protein [Populus trichocarpa]
gi|222859767|gb|EEE97314.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 39/252 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR Y I +L A+ F+ V++IL K + E +IS YG A + ++A
Sbjct: 55 FRTKTFVYKNSIHRLAAARKFNYVEEILEDQKQYEDIYKEGFN-ARLISLYGVAGMFDNA 113
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------- 145
+VFDEM RTV SFN LL A + K D LF
Sbjct: 114 RKVFDEMFERKCARTVVSFNALLGACVNSKKFDEAEGLFKGLSKELEIEPDLVSYNTVLK 173
Query: 146 ----------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
++ +K + PD ++N L+HG R D +++++M ++ ++P
Sbjct: 174 AFCEMGSMDSAATLLDEMEKKGLEPDLITFNTLLHGFYAKGRFVDGERIWEQMKEKNVEP 233
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ ++ + GL LE R+++ +K+ E+ M+ ++ D +++LI+G G+L A +
Sbjct: 234 DIRSYNAKLLGLTLEKRMEDVVKVVEE-MKSEGIQLDTFSYSTLIRGFVNEGDLKKAKHW 292
Query: 250 KEEMVRNKIEMD 261
E+ R+ + D
Sbjct: 293 YHEIGRSGCKRD 304
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 2/196 (1%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+K FDE + + L + + P+ + + V+ + ++ A + DEM ++ +
Sbjct: 142 SKKFDEAEGLFKGLSKELEIEPDLVSYNTVLKAFCEMGSMDSAATLLDEMEKKGLEPDLI 201
Query: 124 SFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNTLL+ G+ +D Q+ EK V PD SYN + G + +R+ED KV +EM
Sbjct: 202 TFNTLLHGFYAKGRFVDGERIWEQMKEKNVEPDIRSYNAKLLGLTLEKRMEDVVKVVEEM 261
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+Q ++ TLI G E + +A ++ R K D LI G+
Sbjct: 262 KSEGIQLDTFSYSTLIRGFVNEGDLKKAKHWYHEIGRS-GCKRDKLTLEGLIPFALQKGD 320
Query: 243 LSLALGFKEEMVRNKI 258
A G ++++ +K+
Sbjct: 321 FMFAYGICKDVLCSKL 336
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSF--NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ R LEH ++ F S RT K+F ++ + K + + ++ + ++Y
Sbjct: 35 KERNLEHLVEKFKNASVDEDFRT-KTFVYKNSIHRLAAARKFNYVEEILEDQKQYEDIYK 93
Query: 157 CSYN---ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+N I ++G V+ ++A KVFDEM +R+ T+V+F L+ + DEA L
Sbjct: 94 EGFNARLISLYG--VAGMFDNARKVFDEMFERKCARTVVSFNALLGACVNSKKFDEAEGL 151
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + + ++PD + +++K C +G + A +EM + +E D
Sbjct: 152 FKGLSKELEIEPDLVSYNTVLKAFCEMGSMDSAATLLDEMEKKGLEPD 199
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y+++I L D ++L+QL D P I + +I ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL++ DEM S ++ + ++NT++ M G +DR ++ + +E K PD SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + E+ K+ +M + P +VT+ LI LC + +++EA+ L + +M+ +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PDA + LI C G L +A+ F E M+ +
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 31/278 (11%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR--------------- 48
+K P+ +S L + +L F N NPN +N + R
Sbjct: 17 SKTQKPYSNSSHGLLLSHNRSSLLTFSNSNPNNDNGRSFSSSGARNLQTTTTTDATLPTE 76
Query: 49 ------YNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGR 99
+L D + K+ R+ + LH L+ R P+ I+ +I +
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
R + A++V + + F Q V ++N L+N +ID T + M K SPD +
Sbjct: 137 LRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT 195
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNI++ +L+ A KV +++L QPT++T+ LI LE VDEALKL ++M+
Sbjct: 196 YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML 255
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+KPD + ++I+G+C G + A EMVRN
Sbjct: 256 S-RGLKPDMFTYNTIIRGMCKEGMVDRAF----EMVRN 288
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 103/215 (47%), Gaps = 6/215 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y+ YD +I R D + L + D +P+ + + V++ +
Sbjct: 362 KGLTPDAYS---YDPLIAAFCREGRLDVAIEFLETMISDG-CLPDIVNYNTVLATLCKNG 417
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYN 160
+ AL++F ++ S+NT+ +A+ + G KI + + ++M + PD +YN
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ +++A+++ +M P++VT+ ++ G C R+++A+ + E M+
Sbjct: 478 SMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG- 536
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+P+ + LI+G+ G + A+ ++VR
Sbjct: 537 NGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P+ + +I+ + + ++ A +V D M S + ++N ++ ++ + GK+D +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q++ P +Y IL+ ++ +++A K+ DEML R L+P + T+ T+I G+C
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
E VD A ++ + + + +PD + L++ L G+
Sbjct: 276 EGMVDRAFEMVRN-LELKGCEPDVISYNILLRALLNQGK 313
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ II + + M D +++ L + + ++I N++ RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGCEPDVISYNILL---RA 307
Query: 101 RL----LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
L E ++ +M S V +++ L+ + GKI+ +L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A SY+ L+ RL+ A + + M+ P +V + T++ LC + D+AL++
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V P++ + ++ L + G+ AL EM+ N I+ D
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 4/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ IIT RA+ DE + Q+ + P+ I + +I + ++R + L++
Sbjct: 143 TVVTYNSIITGFCRARRVDEAHGFMEQMVAEG-CHPDIITYTALIGGFCKSRDVGRGLEL 201
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
E++ + +++T+++ + G++ D+F+ M +P A +YN L+ G +
Sbjct: 202 LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITYNSLIGGYCRA 259
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++A ++ +M+ + P +VT+ TL+ C R+D+A +L + M+ + PD
Sbjct: 260 GDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMV-ANKLSPDVVT 318
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
F SL+ GLC G + AL EE+ R
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITR 344
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 107/210 (50%), Gaps = 14/210 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I +++ +V + L L TR P+ + + VI +A L A+
Sbjct: 178 DIITYTALIGGFCKSR---DVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 234
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+F+EMS T ++N+L+ G +D L ++++ +PD +Y LM
Sbjct: 235 DIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAF 291
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
RL+DA+++F +M+ +L P +VTF +L+ GLC E R+++AL+L E++ R P
Sbjct: 292 CKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR-RGCPPT 350
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ G C ++ A EE+V +
Sbjct: 351 IYTYNCVVDGYCKANQVRKA----EELVAD 376
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 6/210 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +++ Y +I L +A + I ++ P I + ++I Y RA ++
Sbjct: 208 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----CAPTAITYNSLIGGYCRAGDMD 263
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A+++ +M V ++ TL++A G++D +LFQ M +SPD ++ L+
Sbjct: 264 EAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 323
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+EDA ++ +E+ +R PT+ T+ ++ G C +V +A +L D R
Sbjct: 324 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVAD-FRSRGF 382
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
P+ + L+ G C G AL + +++
Sbjct: 383 VPNTVTYNILVAGCCRAGRTDQALQYLDQL 412
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L + + DE ++ + + P + + ++I+ + RAR ++ A
Sbjct: 108 NAITYSALVDGLCKCERLDEAVALVETMA-ERGCAPTVVTYNSIITGFCRARRVDEAHGF 166
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++M + + ++ L+ + R +L ++ + +PD +Y+ ++ G
Sbjct: 167 MEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCK 226
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ RL DA +F+EM PT +T+ +LI G C +DEA++L M+ PD
Sbjct: 227 AGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-DKCAPDVV 282
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ C +G L A ++MV NK+ D
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 315
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ L Y ++ L +A+ + Q+L ++ R VP+ V+ ++ A ++
Sbjct: 38 DFLTYTKLVHGLSKARRLRDAVQVLQEMV-SARHVPDNTTLTVVVQSLCLGDRVDDAREL 96
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM + +++ L++ + C ++D L + M E+ +P +YN ++ G
Sbjct: 97 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+RR+++A ++M+ P ++T+ LI G C V L+L ++ R PD
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTR-RGFTPDIV 215
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
++++I GLC G L A+ EEM
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEEM 240
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
LLH +++I L RA + Q+ +D P+ + + ++ +AR L A+QV
Sbjct: 5 TLLH-NVVIGGLCRAGRLRHALGVYRQM-NDAHP-PDFLTYTKLVHGLSKARRLRDAVQV 61
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHG 165
EM S R V TL + + DR+ D +++E + ++ +A +Y+ L+ G
Sbjct: 62 LQEMVS---ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDG 118
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
RL++A + + M +R PT+VT+ ++I G C RVDEA E M+ P
Sbjct: 119 LCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMV-AEGCHP 177
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI G C ++ L E+ R D
Sbjct: 178 DIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPD 213
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+++ L D+ ++++ ++ H + I + ++ + L+ A+ + + M+
Sbjct: 79 VVVQSLCLGDRVDDARELVEEMLHRG-MAANAITYSALVDGLCKCERLDEAVALVETMAE 137
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
TV ++N+++ ++D Q++ + PD +Y L+ G SR +
Sbjct: 138 RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGR 197
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++ E+ +R P +VT+ T+I GLC R+ +A+ + E+M + P A + SLI
Sbjct: 198 GLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM----SCAPTAITYNSLI 253
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
G C G++ A+ +MV +K D
Sbjct: 254 GGYCRAGDMDEAIRLLGKMVDDKCAPD 280
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
+++ Y +++ + D+ ++ Q+ + ++ P+ + F +++ G R+ E AL+
Sbjct: 280 DVVTYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRM-EDALE 337
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ +E++ T+ ++N +++ ++ + +L + P+ +YNIL+ GC
Sbjct: 338 LLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCC 397
Query: 168 VSRRLEDAWKVFDEMLKRRLQ-PTLVT-FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R + A + D++ PT V + ++ LC + R D+A++ E+M++ V P
Sbjct: 398 RAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV-P 456
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
A FA+++ LC + A EEM++
Sbjct: 457 AAATFATVVFALCKAHQPQQAHELLEEMIK 486
>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
Length = 495
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 5/201 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL---KHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+LL Y+ ++ RA ++ +L ++ K + VVP+ + VIS + +AR L A
Sbjct: 175 SLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTA 234
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
V M V +FNTLL+ + GK+D +F+ M E+ P A +Y +L+ G
Sbjct: 235 RYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITG 294
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R++ A F +ML+R ++P + T+ LI GLC +V++AL++ + M +P
Sbjct: 295 HARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSST-GREP 353
Query: 226 DAQVFASLIKGLCAVGELSLA 246
+ + +I LC G++ A
Sbjct: 354 NVVTYTRVIGALCKGGQIERA 374
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 114/240 (47%), Gaps = 13/240 (5%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
K PKLA ++FK A + F + + Y+ + L + + ++I + +
Sbjct: 15 KSPKLASRVFK---------WAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLY 65
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+P + V+ + AL++ +M S + T N L++ + GK+D
Sbjct: 66 K-ECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVD 124
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+L++ + S D SYN+L +G + +++ A VF EM + + P+L+T+ L+Y
Sbjct: 125 AAYELYKRLSDECSLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLY 184
Query: 200 GLCLELRVDEALKLKEDMM---RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
G C R+++A+ L E+M+ + +V PD + ++I G C +L A M+++
Sbjct: 185 GYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKS 244
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 8/170 (4%)
Query: 97 YG--RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKY-- 151
YG +A ++ AL VF EM V ++ ++N LL G++++ MT L +++E
Sbjct: 149 YGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKG 208
Query: 152 --VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
V PD SYN ++ G +R+L A V M+K P +VTF TL+ GLCL ++DE
Sbjct: 209 SDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDE 268
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
A + E M+ N +P A + LI G + A + +M+R +E
Sbjct: 269 ANAMFEYMVE-RNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVE 317
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 117/244 (47%), Gaps = 40/244 (16%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEH 105
F N + Y +I L + Q+L ++ D ++V P +++ +I + +L+
Sbjct: 173 FHLNKVSYGTLINGLCKVGQTSAALQLLRRV--DGKLVQPNVVMYNTIIDSMCKVKLVNE 230
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A ++ EM S + V ++N L++ GK+ TDLF +++ + ++P+ ++NIL+
Sbjct: 231 AFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVD 290
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL--------------------------- 197
G RRL++A V M+K+ ++P + T+ +L
Sbjct: 291 GFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNP 350
Query: 198 --------IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
I+G C +VDEA+ L ++ M N+ PD + SLI GLC +G++S AL
Sbjct: 351 NIHSYSIMIHGFCKIKKVDEAMNLFKE-MHCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409
Query: 250 KEEM 253
+EM
Sbjct: 410 VDEM 413
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I + K DE + ++ H ++P+ + + ++I + + +AL++
Sbjct: 351 NIHSYSIMIHGFCKIKKVDEAMNLFKEM-HCNNIIPDVVTYNSLIDGLCKLGKISYALKL 409
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM V ++N++L+A+ ++D+ L M ++ + PD C+Y L+ G
Sbjct: 410 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK 469
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ RLEDA VF+++L + + + +I G C DE+L L M
Sbjct: 470 NGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKM 518
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 14/220 (6%)
Query: 42 QPLKP--FRYN-LLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
Q +KP F YN L+ ++ ++ +AK +F+ + Q V P + +I +
Sbjct: 311 QGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQ--------RGVNPNIHSYSIMIHGF 362
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDA 156
+ + ++ A+ +F EM N+ V ++N+L++ + GKI L M ++ V D
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ + +++ A + +M +QP + T+ TL+ GLC R+++A + ED
Sbjct: 423 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFED 482
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ V D ++ ++I+G C+ G +L +M N
Sbjct: 483 LL-VKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P F ++ + + R L+ A V M ++ V ++N+L++ ++++ +
Sbjct: 280 PNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHI 339
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F I ++ V+P+ SY+I++HG +++++A +F EM + P +VT+ +LI GLC
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCK 399
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ ALKL D M V D + S++ LC ++ A+ +M I+ D
Sbjct: 400 LGKISYALKL-VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 456
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++ V ++LK +P ++T TLI GLCL+ ++ +AL+ D + + + +LI
Sbjct: 126 SFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQF-HDKVVALGFHLNKVSYGTLI 184
Query: 235 KGLCAVGELSLAL 247
GLC VG+ S AL
Sbjct: 185 NGLCKVGQTSAAL 197
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +I++ P+ + L+ G + ++ A + D+++ V++GTLI GLC
Sbjct: 130 LAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCK 189
Query: 204 ELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ AL+L + RV V+P+ ++ ++I +C V ++ A EMV I D
Sbjct: 190 VGQTSAALQL---LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 246
Query: 262 A 262
Sbjct: 247 V 247
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ II +A + +L ++ R+ P EI F +I + R + A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK-RIHPNEITFNILIDGFCRDENVTAA 318
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+VF+EM +Q V ++N+L+N + + GK+D L M + P+ +YN L++G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L++A ++ D++ KR L P ++TF TLI R+D+A L+ MM V P
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVCP 437
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + LI G C G + A +EM N ++ D
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEII---FCNVISFYGRARLLEHALQVFDEMS 114
+ K GR + + V + + + + VV +++ C V F + A V ++M
Sbjct: 204 LVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKF-------QKAGDVVEDMK 256
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
++ +V ++NT+++ GK+ + L +++ K + P+ ++NIL+ G +
Sbjct: 257 AWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVT 316
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A KVF+EM ++ LQP +VT+ +LI GLC ++DEAL L +D M +KP+ + +L
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNVVTYNAL 375
Query: 234 IKGLC 238
I G C
Sbjct: 376 INGFC 380
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 65/280 (23%)
Query: 38 NTEAQP---LKPFRY---------NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
N+EAQP L F++ N+ + ++ L AK +++++ +L +
Sbjct: 82 NSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSN 141
Query: 86 EEIIFC-NVISFYGRARL---------------LEHALQVFDEMSSFN------------ 117
I +V+ +G A ++ AL+ FD +
Sbjct: 142 STIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPML 201
Query: 118 -----------------------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VS 153
+ V +F+ ++N + GK + D+ + M+ + S
Sbjct: 202 VSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFS 261
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P +YN ++ G + ++ A + EM+ +R+ P +TF LI G C + V A K+
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M R ++P+ + SLI GLC+ G+L ALG +++M
Sbjct: 322 FEEMQR-QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 12/218 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ Q L+P N++ Y+ +I L DE + ++ + P + + +I+ + +
Sbjct: 326 QRQGLQP---NVVTYNSLINGLCSNGKLDEALGLQDKMS-GMGLKPNVVTYNALINGFCK 381
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPD 155
++L+ A ++ D++ + V +FNTL++A GK RM D F +++ V P+
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY---GKAGRMDDAFLLRSMMLDTGVCPN 438
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G +++A K+ EM L+ LVT+ L+ LC + +A++L +
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+M V + P + +LI G G + AL + M
Sbjct: 499 EMFEV-GLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N++ Y+ +I + KM E +++L + + P I F +I YG+A +
Sbjct: 365 LKP---NVVTYNALINGFCKKKMLKEAREMLDDIGKRG-LAPNVITFNTLIDAYGKAGRM 420
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
+ A + M V V ++N L+ G + L + ME + D +YNIL
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ A ++ DEM + L P+ +T+ LI G E AL ++ +M
Sbjct: 481 VDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRT-LMEKKG 539
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + + LIKG C G+L A EM+
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEML 571
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMH 164
A+++ DEM + + ++N L++ G ++ +MEK + +YN+L+
Sbjct: 493 AVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIK 552
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
G +LE+A ++ +EML++ L P T+ L
Sbjct: 553 GFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 120/225 (53%), Gaps = 12/225 (5%)
Query: 39 TEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
T L+ FR+ NL +D II LGRA + + IL + + +E +
Sbjct: 24 TSEHALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIM 148
+ +I YG+A +++ ++++F +M V+RT+KS++ L ++ G+ F +++
Sbjct: 83 WVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKML 142
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ + P ++N+++ G +S +++ A + F++M R + P +VT+ T+I G ++D
Sbjct: 143 SEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREISPDVVTYNTMINGCYRVKKMD 202
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
EA K + M+ N++P + +LIKG +V ++ AL EEM
Sbjct: 203 EAEKYFVE-MKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEM 246
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 119/276 (43%), Gaps = 72/276 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ + +I GRA L HA
Sbjct: 12 HELVYNVLHAAKTSEHALQFFRWVERSNLFEHDRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKSFNTL---------- 128
+++F +M V+RT+KS++ L
Sbjct: 72 PKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVIMRRGRF 131
Query: 129 ------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYNIL 162
N ML+ GK+D F+ M+ + +SPD +YN +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKMDTAMRFFEDMKSREISPDVVTYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++GC +++++A K F EM + ++PT+VT+ TLI G +V +AL+L E+ M+ Y
Sbjct: 192 INGCYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEE-MKGYG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KP+A +++L+ GLC G++S A +EMV I
Sbjct: 251 IKPNAITYSTLLPGLCNAGKMSEAQSILKEMVDKYI 286
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 108/224 (48%), Gaps = 7/224 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N ++ ++P R+ ++++I + D + +K + P+ + + +I+
Sbjct: 139 NKMLSEGIEPTRHT---FNVMIWGFFLSGKMDTAMRFFEDMK-SREISPDVVTYNTMING 194
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
R + ++ A + F EM N++ TV ++ TL+ ++ ++ L + M+ Y + P+
Sbjct: 195 CYRVKKMDEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPN 254
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYGLCLELRVDEALKLK 214
A +Y+ L+ G + ++ +A + EM+ + + P + F LI C +D A +
Sbjct: 255 AITYSTLLPGLCNAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAADVL 314
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 315 KAMIRL-SVPTEAGHYGVLIENFCKAGQHDRAVKLLDKLIEKDI 357
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 87/170 (51%), Gaps = 3/170 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKY 151
V + GR E AL V +M ++NTL+ A G++DR L +M E
Sbjct: 164 VRALCGRGHRKE-ALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGG 222
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ P+ ++N +++G + R+EDA KVFDEM+K L P V++ TL+ G C EAL
Sbjct: 223 LKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEAL 282
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +M R + PD F SLI +C G L A+G EM ++M+
Sbjct: 283 SVFAEMTR-KGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMN 331
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 112/220 (50%), Gaps = 6/220 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP NL+ ++ ++ + +A ++ +++ ++ + + P+ + + ++ Y +
Sbjct: 223 LKP---NLVTFNSVVNGICKAGRMEDARKVFDEMVKEG-LAPDGVSYNTLVGGYCKVGCS 278
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
AL VF EM+ + V +F +L++ M G ++R L + M E+ + + ++ L
Sbjct: 279 HEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G L+DA EM + R+QP++V + LI G C+ R+DEA +L + M
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE-MEAKG 397
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
VKPD +++++ C G+ A ++M+ N + DA
Sbjct: 398 VKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDA 437
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N + + +I + D+ + +++ R+ P + + +I+ Y ++
Sbjct: 326 RGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQ-CRIQPSVVCYNALINGYCMVGRMD 384
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++ EM + V+ V +++T+L+A G L Q ++E V PDA +Y+ L+
Sbjct: 385 EARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+RL DA +F M+ LQP VT+ +LI G C E V+ AL L ++M++ V
Sbjct: 445 RVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKA-GV 503
Query: 224 KPDAQVFASLIKGL 237
PD ++ LI GL
Sbjct: 504 LPDVVTYSVLINGL 517
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
++ V+P+ +YNIL+ ++A V +M P VT+ TL+ C
Sbjct: 147 SMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAG 206
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
VD A +L DMMR +KP+ F S++ G+C G + A +EMV+ + D
Sbjct: 207 EVDRAERLV-DMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG 262
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + ++I + + +E AL + DEM V V +++ L+N + + L
Sbjct: 470 PDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRL 529
Query: 145 -FQIMEKYVSPDACSYNILMHGC---------------VVSRRLEDAWKVFDEMLKRRLQ 188
F++ + P Y+ LM C + + +A KV+ +L R
Sbjct: 530 LFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWN 589
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ LI+G C E V +AL + M++ P++ SLI+GL
Sbjct: 590 LDGSVYSVLIHGHCREGNVMKALSFHKQMLQC-GFAPNSTSTISLIRGL 637
>gi|3860252|gb|AAC73020.1| hypothetical protein [Arabidopsis thaliana]
Length = 427
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 24/267 (8%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++DP L LF N QP F + Y + I KLG AKM+
Sbjct: 123 TPEELADAITLEEDPFLCFHLF-------NWASQQPR--FTHENCSYHIAIRKLGAAKMY 173
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQ--RTVKS 124
E+ I++Q+ R + E ++ ++I ++ +A L A+ +F M +S N++ T+++
Sbjct: 174 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 232
Query: 125 FNTLLNAMLTCGK--------IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ L A+L G ++ + LF Q+++ + PD + N L+ G V+S + DA
Sbjct: 233 YHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDA 292
Query: 176 WKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++F +M + +P T+ LI+GLC + R A +L +M + P+ + + SL+
Sbjct: 293 LRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEM-KGKGFVPNGKSYNSLV 351
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ EM+ N +D
Sbjct: 352 NAFALSGEIDDAVKCLWEMIENGRVVD 378
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ V+ + Q+ D+ + P+ ++ Y + + AL++F +MS ++ + +++
Sbjct: 255 ETVRSLFRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYD 313
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ + G+ +L M+ K P+ SYN L++ +S ++DA K EM++
Sbjct: 314 YLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIEN 373
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ TL+ C + + DEA +L E M+R
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLE-MLR 406
>gi|242032205|ref|XP_002463497.1| hypothetical protein SORBIDRAFT_01g000800 [Sorghum bicolor]
gi|241917351|gb|EER90495.1| hypothetical protein SORBIDRAFT_01g000800 [Sorghum bicolor]
Length = 374
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 98/186 (52%), Gaps = 3/186 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
ILH + +VP++ + V+S A +E A+ + EM V + ++FN +L AM
Sbjct: 183 ILHDVIPAWNLVPDKFTYSTVVSALADAGWVEDAVALVHEMVVDGVV-SAEAFNPVLRAM 241
Query: 133 LTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L G ++ LF+ M+ K + A +YN+L+HG ++ + A + M + P L
Sbjct: 242 LRAGDVNGAAKLFRFMQLKGCTLTAVTYNVLLHGLLLCGKARAAMNIMRRMENEGIVPGL 301
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+T+G ++ GL RV++A K+ ++M R + P VF+++I G C GE+ AL E
Sbjct: 302 MTYGAVVDGLVKCGRVEDAWKVAQEMGR-KGLAPSEFVFSAVIAGFCKSGEVDRALMVWE 360
Query: 252 EMVRNK 257
MV +
Sbjct: 361 AMVAAR 366
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L A ++ ++H++ D V E F V+ RA + A ++F M
Sbjct: 200 YSTVVSALADAGWVEDAVALVHEMVVDGVVSAEA--FNPVLRAMLRAGDVNGAAKLFRFM 257
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
T ++N LL+ +L CGK ++ + ME + + P +Y ++ G V R+
Sbjct: 258 QLKGCTLTAVTYNVLLHGLLLCGKARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRV 317
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
EDAWKV EM ++ L P+ F +I G C VD AL + E M+
Sbjct: 318 EDAWKVAQEMGRKGLAPSEFVFSAVIAGFCKSGEVDRALMVWEAMV 363
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 18/259 (6%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
T P L Q+ P LA++LF + + + + PL ++ ++ L +++
Sbjct: 130 TFPILFERLAVSQRRPDLAVRLFLSLHRSHRVAQDLPL---------FNSLLDALSKSRH 180
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ ++ L+ R P+ + + + + R + AL V M + T ++N
Sbjct: 181 AGKAASLVRALEQ--RFTPDVVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYN 238
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFD 180
+L G++ D F M+K S PD SY ++HG V+ +LE A KVFD
Sbjct: 239 IILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFD 298
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM K P++ T+ LI +C + V++A+ + + M+ V P+ + LI+GLC
Sbjct: 299 EMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGML-VKGYVPNVVTYTVLIRGLCHA 357
Query: 241 GELSLALGFKEEMVRNKIE 259
G++ L E M E
Sbjct: 358 GKIDRGLKLLERMKNGGCE 376
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ LG A ++ +++ ++ + P + +I + +E A+ V
Sbjct: 273 DVVSYTTMVHGLGVAGQLEKARKVFDEMAKEG-CAPSVATYNALIQVICKKGNVEDAVTV 331
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD M V ++ L+ + GKIDR L + M+ P +YN+L+
Sbjct: 332 FDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFE 391
Query: 169 SRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMM-RVYNV 223
+E +F++M K P T+ +I + + R ++ A ++ ++M+ R Y
Sbjct: 392 EGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGY-- 449
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
P +F ++ GL G L+
Sbjct: 450 LPRRFMFNRVLNGLMLTGNQELS 472
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ II +A + +L ++ R+ P EI F +I + R + A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVA-KRIHPNEITFNILIDGFCRDENVTAA 318
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+VF+EM +Q V ++N+L+N + + GK+D L M + P+ +YN L++G
Sbjct: 319 KKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALING 378
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L++A ++ D++ KR L P ++TF TLI R+D+A L+ MM V P
Sbjct: 379 FCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS-MMLDTGVCP 437
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + LI G C G + A +EM N ++ D
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKAD 473
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEII---FCNVISFYGRARLLEHALQVFDEMS 114
+ K GR + + V + + + + VV +++ C V F + A V ++M
Sbjct: 204 LVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKF-------QKAGDVVEDMK 256
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
++ +V ++NT+++ GK+ + L +++ K + P+ ++NIL+ G +
Sbjct: 257 AWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVT 316
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A KVF+EM ++ LQP +VT+ +LI GLC ++DEAL L +D M +KP+ + +L
Sbjct: 317 AAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNVVTYNAL 375
Query: 234 IKGLC 238
I G C
Sbjct: 376 INGFC 380
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 13/221 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ Q L+P N++ Y+ +I L DE + ++ + P + + +I+ + +
Sbjct: 326 QRQGLQP---NVVTYNSLINGLCSNGKLDEALGLQDKMS-GMGLKPNVVTYNALINGFCK 381
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPD 155
++L+ A ++ D++ + V +FNTL++A GK RM D F +++ V P+
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAY---GKAGRMDDAFLLRSMMLDTGVCPN 438
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G +++A K+ EM L+ LVT+ L+ LC + +A++L +
Sbjct: 439 VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLD 498
Query: 216 DM--MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+M M + + + LIKG C G+L A EM+
Sbjct: 499 EMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEML 539
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 65/280 (23%)
Query: 38 NTEAQP---LKPFRY---------NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
N+EAQP L F++ N+ + ++ L AK +++++ +L +
Sbjct: 82 NSEAQPDLILCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSN 141
Query: 86 EEIIFC-NVISFYGRARL---------------LEHALQVFDEMSSFN------------ 117
I +V+ +G A ++ AL+ FD +
Sbjct: 142 STIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPML 201
Query: 118 -----------------------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VS 153
+ V +F+ ++N + GK + D+ + M+ + S
Sbjct: 202 VSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFS 261
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P +YN ++ G + ++ A + EM+ +R+ P +TF LI G C + V A K+
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M R ++P+ + SLI GLC+ G+L ALG +++M
Sbjct: 322 FEEMQR-QGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I G+A D+ +L + DT V P + +I + R ++ A ++
Sbjct: 403 NVITFNTLIDAYGKAGRMDDAF-LLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEKYVS-PDACSYNILMHG 165
EM ++ + ++N L++A+ G K R+ D +MEK + +YN+L+ G
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKG 521
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+LE+A ++ +EML++ L P T+ L
Sbjct: 522 FCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++ +I AK D+ ++LH++ +T +V + + +I + L AL +
Sbjct: 388 DVFTFNTLIDGYCGAKRIDDGTELLHEMT-ETGLVADTTTYNTLIHGFCLVGDLNAALDL 446
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
+M S V + + NTLL+ + GK+ ++F+ M+K V PD
Sbjct: 447 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQ 506
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A +++ EM R + P +T+ ++I GLC + R+DEA ++ D
Sbjct: 507 TYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMF-DS 565
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M + PD F +L+ G C G + L EM R I DA
Sbjct: 566 MGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADA 610
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 112/214 (52%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I + + E Q++L ++ + ++ P + + +I+ Y + R A ++
Sbjct: 283 DLFTYNCMIDGFCSSGRWSEAQRLLQEML-ERKINPNVVTYSALINAYVKERKFFEAEEL 341
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+DEM + ++N++++ ++D +F +M K SPD ++N L+ G
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCG 401
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R++D ++ EM + L T+ TLI+G CL ++ AL L + M+ V PD
Sbjct: 402 AKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 460
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ GLC G+L AL + M ++K+++DA
Sbjct: 461 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 494
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154
S + + LE A+ +F +M +V FN L+ ++ + D + L+Q ME+ P
Sbjct: 50 SGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIP 109
Query: 155 -DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+NIL+ +L A F ++ K QP +VTF TL++GLC+E RV EAL L
Sbjct: 110 CDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDL 169
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M R P+ F +L+ GLC G + A+ + MV + ++
Sbjct: 170 FHQMCR-----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 210
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 9/176 (5%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C+V SF + L AL F +++ Q V +F+TLL+ + ++
Sbjct: 108 IPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEAL 167
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
DLF M + P+ ++ LM+G R+ +A + D M++ LQP +T+GT++ G+C
Sbjct: 168 DLFHQMCR---PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 224
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
AL L M + ++KP+ +++++I GL G S A EM I
Sbjct: 225 KIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGI 280
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P I F ++ R + + ++ +M + V SFN L+ +C K+
Sbjct: 71 SRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPF 130
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F +I + PD +++ L+HG V R+ +A +F +M + P +VTF TL+
Sbjct: 131 ALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTLMN 186
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E RV EA+ L + M+ ++P+ + +++ G+C +G+ AL +M
Sbjct: 187 GLCREGRVVEAVALLDRMVE-DGLQPNQITYGTIVDGMCKIGDTVSALNLLRKM 239
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
N + Y I+ G K+ D V +L +++ + + P +I+ +I + A
Sbjct: 212 NQITYGTIVD--GMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAH 269
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
++ EM + + ++N +++ + G+ L Q ++E+ ++P+ +Y+ L++
Sbjct: 270 NLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAY 329
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK-- 224
V R+ +A +++DEML R + P +T+ ++I G C + R+D A E M V K
Sbjct: 330 VKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAA----EHMFYVMATKGC 385
Query: 225 -PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD F +LI G C + EM + D
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADT 424
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ LE A +++ EM + ++++++N + ++D T +F M K SPD +
Sbjct: 519 GKFLE-AEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVT 577
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ G + R++D ++F EM +R + +T+ TLI+G ++ AL + ++M+
Sbjct: 578 FNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMI 637
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V PD S++ L + EL A+ E++
Sbjct: 638 S-SGVYPDTITIRSMLTVLWSKEELKRAVAMLEDL 671
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + N + Y +I L + DE Q+ + + P+ + F ++S Y +A
Sbjct: 532 PHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKS-FSPDVVTFNTLVSGYCKAGR 590
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDA 156
++ L++F EM + ++ TL++ G I+ D+FQ ++ V PD
Sbjct: 591 VDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDT 645
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRALKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKAGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKS-----------------------------------FNTLLNAMLTCGKIDRMT 142
V+RT+KS FN L+ GK+D
Sbjct: 111 VERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVDTAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + +SPD +YN +++GC +++++A K F EM R ++PT+V++ TLI G
Sbjct: 171 RFFEDMKSREISPDVVTYNTMINGCYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +KP+A +++L+ GLC G++S A +EMV I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKPNAITYSTLLPGLCDAGKMSEAQSILKEMVDKYI 286
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 108/224 (48%), Gaps = 7/224 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N ++ ++P R+ ++++I + D + +K + P+ + + +I+
Sbjct: 139 NKMLSEGIEPTRHT---FNVLIWGFFLSGKVDTANRFFEDMK-SREISPDVVTYNTMING 194
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
R + ++ A + F EM N++ TV S+ TL+ ++ ++D L + M+ Y + P+
Sbjct: 195 CYRVKKMDEAEKYFVEMKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPN 254
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYGLCLELRVDEALKLK 214
A +Y+ L+ G + ++ +A + EM+ + + P + F LI C + A +
Sbjct: 255 AITYSTLLPGLCDAGKMSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLGAAADVL 314
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 315 KAMIRL-SVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDI 357
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y R L+ ++ + M + VQ V +++ L+N + K+D +L
Sbjct: 169 PTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANEL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++ + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G+L A +++ M++ I +D
Sbjct: 289 KGDLKQAQDLI-DEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + ++ A VFD ++ + ++ T SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M+ V PD +Y++L++G +++ A ++F+EML L P VTF TLI G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHC 252
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++ D
Sbjct: 253 KNGRVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 107/221 (48%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D ++ +++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDYANELFNEML-DNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRD 410
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 111/208 (53%), Gaps = 5/208 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ ++++I L R + +L ++ KH P + + ++ + + + +E A++
Sbjct: 188 SVVTFNILINFLCRKGLLGRAIDVLEKMPKHG--CTPNSLSYNPLLHGFCKEKKMERAIE 245
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+M+S + ++NTLL A+ GK+D +L Q+ K SP +YN ++ G
Sbjct: 246 YLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 305
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + A K+ DEM + L+P ++T+ +L+ GL E +VDEA+K D + V VKP+A
Sbjct: 306 KVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHD-LEVLGVKPNA 364
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
+ +++ GLC + A+ F MV+
Sbjct: 365 ITYNAIMLGLCKARKTDRAIDFLAYMVQ 392
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D ++L+QL P I + VI + + A ++
Sbjct: 258 DIVTYNTLLTALCKDGKVDAAVELLNQLSSKG-CSPVLITYNTVIDGLSKVGKTDQAAKL 316
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM + ++ + ++++L+ + GK+D F +E V P+A +YN +M G
Sbjct: 317 LDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCK 376
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+R+ + A M++R +PT ++ LI GL E EAL+L
Sbjct: 377 ARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALEL 421
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 2/170 (1%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
EEI N +S R LE + + M + +L+ GK + T +
Sbjct: 83 EEIESNNNLSKLVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIM 142
Query: 146 QIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+I+E + PD +YN+L+ G + R DA K+ +M++R P++VTF LI LC +
Sbjct: 143 EIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRK 202
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ A+ + E M + + P++ + L+ G C ++ A+ + +M
Sbjct: 203 GLLGRAIDVLEKMPK-HGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMT 251
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 18/153 (11%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYN 160
H+L F+E+ S N L+ ++ G+++ + F+ +E V PD
Sbjct: 77 HSLTNFEEIES----------NNNLSKLVRNGELE---EGFRFLESMVYRGDIPDIIPCT 123
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G + A ++ + + P ++T+ LI G+C R +A KL DM+R
Sbjct: 124 SLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVR- 182
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
P F LI LC G L A+ E+M
Sbjct: 183 RGCSPSVVTFNILINFLCRKGLLGRAIDVLEKM 215
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 4/205 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L A +E ++H++ D V E F V+ RA + A+++F M
Sbjct: 200 YSTVVSALADAGCVEEAVALVHEMVVDGVVSAEA--FNPVLKAMLRAGDVNGAVKLFRFM 257
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
T ++N LL+ +L CG+ ++ + ME + + P +Y ++ G V R+
Sbjct: 258 QLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGLVKCGRV 317
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDAWKV EM + L P+ F +I G C VD AL + E M+ VKP+ ++++
Sbjct: 318 EDAWKVAQEMGGQGLAPSEFVFSAVITGFCKSGEVDRALMVWETMVAA-RVKPNVVLYSA 376
Query: 233 LIKGLCAVGELSLALGFKEEMVRNK 257
+I G G ++ A EEMV K
Sbjct: 377 MIDGFARSGRMTEAEKLFEEMVDAK 401
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
ILH + +VP++ + V+S A +E A+ + EM V + ++FN +L AM
Sbjct: 183 ILHDVIPAWNLVPDKFTYSTVVSALADAGCVEEAVALVHEMVVDGVV-SAEAFNPVLKAM 241
Query: 133 LTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L G ++ LF+ M+ K + A +YN+L+HG ++ A + M + P L
Sbjct: 242 LRAGDVNGAVKLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGL 301
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+T+G ++ GL RV++A K+ ++M + P VF+++I G C GE+ AL E
Sbjct: 302 MTYGAVVDGLVKCGRVEDAWKVAQEMGG-QGLAPSEFVFSAVITGFCKSGEVDRALMVWE 360
Query: 252 EMVRNKIE 259
MV +++
Sbjct: 361 TMVAARVK 368
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 2/209 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +IT ++ D + + RV P +++ +I + R+ + A ++F+EM
Sbjct: 339 FSAVITGFCKSGEVDRALMVWETMVA-ARVKPNVVLYSAMIDGFARSGRMTEAEKLFEEM 397
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ ++++++ R ++ M K P A SY+IL+ G RL
Sbjct: 398 VDAKCIPNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLCDVGRL 457
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA V+ M+ R P + + +++ GLC+ VD L+L DM+ + KPD +
Sbjct: 458 KDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRLFNDMLAKGDAKPDVISYNV 517
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ L +L A+ +M+ + D
Sbjct: 518 LLDALIRTNDLPRAMDLLNQMLDQMCDPD 546
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP I + +IS L+ A+ V+ M ++ +++ + G +D
Sbjct: 438 VPTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLR 497
Query: 144 LFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-------F 194
LF M + PD SYN+L+ + + L A + ++ML + P +T F
Sbjct: 498 LFNDMLAKGDAKPDVISYNVLLDALIRTNDLPRAMDLLNQMLDQMCDPDTITCNIFLREF 557
Query: 195 GTL-------IYGLCLELRVDEALKLKEDMMRVYNVK---PDAQVFASLIKGLC 238
G L + GL + L + + D++ V K P+A ++ ++++G+C
Sbjct: 558 GVLEGKGREFLEGLVMRLCYRDRYRAAGDVVMVMLAKYIVPEAGIWYTIVRGVC 611
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 37/223 (16%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH L D V PE F ++ R+ L A VFDEM VQ TV +FNTL++ M
Sbjct: 103 LHLL--DAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMC 160
Query: 134 TCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ L +M K ++PD +Y + G + R++DA ++F+EM +R L P V
Sbjct: 161 KASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTV 220
Query: 193 TFGTLIYGLCLELRVDEALKLKEDM----------------------------------M 218
TLI C E V L+L+ +M M
Sbjct: 221 VLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEM 280
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R +KPD + +LI G C GEL A+ K+EM + +D
Sbjct: 281 RKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 323
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 2/169 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L L + P+ + I + ++ A+++F+EM + TL++A
Sbjct: 171 LRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHC 230
Query: 134 TCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G + +L +++ + V D +YN L++G R ++ A + +EM K L+P V
Sbjct: 231 KEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKV 290
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
T+ TLI G C E +D A+++K++M V D + +LI GL G
Sbjct: 291 TYTTLIDGCCKEGELDTAMEMKQEMSD-EGVALDDVTYTALISGLSKAG 338
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ +I + + + L++ EM++ V+ + ++N L+N + D+
Sbjct: 217 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 276
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M K + PD +Y L+ GC L+ A ++ EM + VT+ LI GL
Sbjct: 277 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R +A ++ +MM ++PD + +I C G++ +EM
Sbjct: 337 AGRSVDAERILCEMMEA-GLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEM 385
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 85/192 (44%), Gaps = 9/192 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP + + Y +I + D ++ ++ D V +++ + +IS +A
Sbjct: 285 LKPDK---VTYTTLIDGCCKEGELDTAMEMKQEMS-DEGVALDDVTYTALISGLSKAGRS 340
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNIL 162
A ++ EM +Q ++ +++A G + L ++ K +P +YN++
Sbjct: 341 VDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVV 400
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M+G ++++A + + ML + P +T+ L+ G C +V + +LK
Sbjct: 401 MNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKS----AKG 456
Query: 223 VKPDAQVFASLI 234
+ D V+ SLI
Sbjct: 457 MVSDFGVYTSLI 468
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 87 EIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ + CN+ I + + + ++ AL++F EM +Q ++ TL+N + + G + +LF
Sbjct: 472 DTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELF 531
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q++ + P+ YNI++H + A +F M+++ + P VTF TLIY L
Sbjct: 532 EQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKR 591
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R EAL L +D MR V+PD F LI GL G+ +LA E M+ N I +D
Sbjct: 592 SRAIEALNLFKD-MRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGIILD 647
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 137 KIDRMTDLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
K +R+ D Q++EK SPD +Y ++ G +++ +A +++EM+KR L+P +
Sbjct: 275 KQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVF 334
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ G LI+GLC +VDEA +L M+ + +++ ++ +LI G G + A
Sbjct: 335 SCGALIFGLCKNNKVDEAFELASRMLTL-DIELSVCIYNALISGFWRAGSIDKAYKIISF 393
Query: 253 MVRNKIEMD 261
M N E D
Sbjct: 394 MRTNGCEPD 402
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+++ ++A+ +I+ + +L M+K SPD + NI ++ RL DA ++ ++M
Sbjct: 230 TYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKM 289
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ P +VT+ T++ GLC + EA+ L E+M++ ++KPD +LI GLC +
Sbjct: 290 RTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVK-RDLKPDVFSCGALIFGLCKNNK 348
Query: 243 LSLALGFKEEMVRNKIEM 260
+ A M+ IE+
Sbjct: 349 VDEAFELASRMLTLDIEL 366
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 7/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQ 108
+++ Y +++ L K F E + ++ R + ++ C + F + ++ A +
Sbjct: 297 DVVTYQTVVSGLCDNKKFAEAIGLWEEMVK--RDLKPDVFSCGALIFGLCKNNKVDEAFE 354
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM-HGC 166
+ M + +++ +V +N L++ G ID+ + M PD +YNIL+ H C
Sbjct: 355 LASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYC 414
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +E A K+ +M + P ++ L+ GLC ++D+A D M V D
Sbjct: 415 TIG-MMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGF-CD 472
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C ++ AL +EM ++ DA
Sbjct: 473 TVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADA 508
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + V+S + A+ +++EM +++ V S L+ + K+D +
Sbjct: 296 PDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVD---EA 352
Query: 145 FQIMEKYVSPD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F++ + ++ D C YN L+ G + ++ A+K+ M +P +VT+ L+
Sbjct: 353 FELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNH 412
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
C +++A KL M V PD + L+KGLC +L A F
Sbjct: 413 YCTIGMMEKAEKLIRK-METSGVNPDRYSYNQLLKGLCKTHQLDKAFAF 460
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 109/188 (57%), Gaps = 7/188 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L YD++I K E + +L ++ D + PE I + +I + R +E A ++
Sbjct: 284 DLYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRI 342
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
DEM + ++ + +NTLLN + GK+++ ++ Q +MEK V PD+ +Y++L+ G
Sbjct: 343 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 402
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDMMRVYNVKPD 226
+ + A+++ DEM KR+L PT++T+ +I GLC L+ A+ L+E +M +KP+
Sbjct: 403 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAI-LREMVMN--GLKPN 459
Query: 227 AQVFASLI 234
A V+ +L+
Sbjct: 460 AVVYTTLM 467
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I +AK +E + L ++ + R+ P + I Y +A +E A + F+EM
Sbjct: 498 YNSLIIGFCKAKRMEEARTYLMEM-LERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 556
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S V V + L+ G + +F+ I+ + V D +Y++L+HG + ++
Sbjct: 557 LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKM 616
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+ +F E+ ++ L P T+ +LI G C + VD+A +L E+M + + PD +
Sbjct: 617 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMC-IKGINPDIVTYNI 675
Query: 233 LIKGLCAVGELSLA 246
LI GLC GE+ A
Sbjct: 676 LIDGLCKAGEIERA 689
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K +++ Y+++I L +A + + + ++ + P + + ++ Y +
Sbjct: 659 EEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE-GRGLTPNCVTYAAMVDGYCK 717
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
++ A Q+ +EM V +N +LN K ++ DLFQ M + S+
Sbjct: 718 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSF 777
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ G S +L++A + +EM++++ P VT+ +LI C + EA +L +M
Sbjct: 778 NTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQE 837
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
NV P A+ + SL+ G +G +S EEMV IE D
Sbjct: 838 -RNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 878
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGC 166
+VFD M + V V ++ +++A G + D L ++ EK SP+ +YN+++ G
Sbjct: 201 KVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGL 260
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R L++A ++ M+ + L P L T+ LI G C+E R EA + +M+ V +KP+
Sbjct: 261 CRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV-GLKPE 319
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G G++ A K+EMV IE +
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEAN 354
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 99/182 (54%), Gaps = 2/182 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+V+P+ + N+IS + + ++ A +V EM + ++N ++ + +D
Sbjct: 210 KVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEA 269
Query: 142 TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+L + M +K + PD +Y+IL++G + +R +A + EM+ L+P +T+ LI G
Sbjct: 270 IELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
+ +++A ++K++M+ ++ + ++ +L+ G+C G++ AL +EM+ +E
Sbjct: 330 FMRQGDIEQAFRIKDEMVAC-GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEP 388
Query: 261 DA 262
D+
Sbjct: 389 DS 390
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 96/176 (54%), Gaps = 4/176 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I RARLL+ A+++ M + + +++ L+N K R L
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM-EKRSREAKL 306
Query: 145 --FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
++++ + P+ +YN L+ G + +E A+++ DEM+ ++ L+ + TL+ G+C
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++++AL++ ++MM V+PD+Q ++ LI+G C ++ A +EM + K+
Sbjct: 367 KAGKMEKALEIMQEMME-KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P I+ +I + + + A VF + S V + V++++ L++ + GK+
Sbjct: 561 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 620
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+F ++ EK + P+A +YN L+ G ++ A ++ +EM + + P +VT+ LI GL
Sbjct: 621 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 680
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ A L +D + + P+ +A+++ G C + A EEM+ + D
Sbjct: 681 CKAGEIERAKNLFDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 739
Query: 262 A 262
A
Sbjct: 740 A 740
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ ++ + +A ++ +I+ ++ + V P+ + +I + R + + A ++
Sbjct: 354 NLIIWNTLLNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 412
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
DEM + TV +++ ++N + CG + + + M
Sbjct: 413 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 472
Query: 149 ---------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
E+ + PD YN L+ G ++R+E+A EML+RRL+P T
Sbjct: 473 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 532
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+G I G ++ A + +M+ V P+ ++ +LI+G C G ++ A
Sbjct: 533 YGAFIDGYSKAGEMEIADRYFNEMLSC-GVLPNVGIYTALIEGHCKEGNVTEAF 585
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-S 95
++ E + L P N + Y ++ ++K Q+L ++ R VP + NVI +
Sbjct: 694 DDIEGRGLTP---NCVTYAAMVDGYCKSKNPTAAFQLLEEML--LRGVPPDAFIYNVILN 748
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSP 154
F + E AL +F EM TV SFNTL+ GK+ L + ++EK P
Sbjct: 749 FCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 807
Query: 155 DACSYNILM-HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ +Y L+ H C + +A +++ EM +R + PT T+ +L++G + E L
Sbjct: 808 NHVTYTSLIDHNCKAGM-MGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 866
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
E+M+ ++PD + +I C G + A K+E++ + M
Sbjct: 867 FEEMV-AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPM 912
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 36/120 (30%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFD--------------------------------- 180
P S N L+ + ++E WKVFD
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237
Query: 181 --EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
EM ++ P LVT+ +I GLC +DEA++LK M+ + PD + LI G C
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVD-KGLVPDLYTYDILINGFC 296
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y + L + ++LH++ + + + ++I+ +A LE A++
Sbjct: 465 NVVTYTALTDGLCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLEQAMRT 523
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+M + ++ V ++ TL++A+ G +DR L Q +++K + P +YN+LM+G +
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCM 583
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S R+E K+ D ML++ + P T+ +L+ C+E + ++ + MR +V P+
Sbjct: 584 SGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKG-MRSRDVGPNEN 642
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LIKG C + AL F +EM++ + A
Sbjct: 643 TYNILIKGHCKARNMKEALYFHDEMIQKGFRLTA 676
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 7/160 (4%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
L+ A+++F E+ + V S+N LL A+ G++ LF M +PD +Y IL
Sbjct: 244 LDEAIELFQELP----HKNVCSYNILLKALCDAGRVKDARQLFDEMAS--APDVVTYGIL 297
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+HG LE+A K+ DEM+ ++P + +++ LC + + +AL++ EDM++
Sbjct: 298 IHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQ-RK 356
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V D ++ +++ G C G+L A + +EM R + D
Sbjct: 357 VILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 396
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P ++ +V++ + AL+V ++M V + T+L+ G +
Sbjct: 322 VEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSAR 381
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F M+ K ++ D +Y +++G + LE+A K+ EM RRL VT+ LI G
Sbjct: 382 RWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGY 441
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ EA ++ M++ V P+ + +L GLC G++ A EM +E++
Sbjct: 442 CKRGKMAEAFQMHNAMVQ-RGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELN 500
Query: 262 A 262
A
Sbjct: 501 A 501
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 5/177 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP Y Y +I L ++ D +L ++ D + P + + +++ + + +
Sbjct: 532 LKPDVYT---YTTLIDALCKSGDLDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRV 587
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E ++ D M N+ ++N+L+ + T++++ M + V P+ +YNIL
Sbjct: 588 EGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNIL 647
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ G +R +++A DEM+++ + T ++ LI L + + EA +L DM +
Sbjct: 648 IKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRK 704
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 153 SPDACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
SP+AC+ V+SR L++A ++F E+ + + ++ L+ LC RV +A
Sbjct: 231 SPEACN-------AVLSRLPLDEAIELFQELPHK----NVCSYNILLKALCDAGRVKDAR 279
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L ++M PD + LI G CA+GEL A+ +EMV +E +A
Sbjct: 280 QLFDEMASA----PDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNA 326
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y+++I L D ++L QL D P I + +I ++
Sbjct: 183 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN-CQPTVITYTILIEATMLEGGVD 241
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL++ DEM S ++ + ++NT++ M G +DR ++ + +E K PD SYNIL+
Sbjct: 242 EALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILL 301
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + E+ K+ +M + P +VT+ LI LC + +++EA+ L + +M+ +
Sbjct: 302 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 360
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PDA + LI C G L +A+ F E M+ +
Sbjct: 361 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 393
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P+ + +I+ + + ++ A +V D M S + ++N ++ ++ + GK+D +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q++ P +Y IL+ ++ +++A K+ DEML R L+P + T+ T+I G+C
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
E VD A ++ + + + +PD + L++ L G+
Sbjct: 272 EGMVDRAFEMIRN-LELKGCEPDVISYNILLRALLNQGK 309
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 102/215 (47%), Gaps = 6/215 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y+ YD +I R D + L + D +P+ + + V++ +
Sbjct: 358 KGLTPDAYS---YDPLIAAFCREGRLDVAIEFLETMISDG-CLPDIVNYNTVLATLCKNG 413
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYN 160
+ AL++F ++ S+NT+ +A+ + G KI + + +++ + PD +YN
Sbjct: 414 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYN 473
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ ++ A+++ +M P++VT+ ++ G C R+++A+ + + M+
Sbjct: 474 SMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVG- 532
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+P+ + LI+G+ G + A+ ++VR
Sbjct: 533 NGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 567
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 111/268 (41%), Gaps = 54/268 (20%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRV 83
+L F N NPN +N ++ R +L T A + QQ L DT++
Sbjct: 35 SLLTFSNSNPNHDNGKSFSSSGAR------NLQATTTDAAIPTERRQQHSQSLGFRDTQM 88
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+ C ++ LLE ++ + +K F TL N + +
Sbjct: 89 LKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRN-------VPKAVR 141
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLED----------------------------- 174
+ +I+EK+ PD +YN L++G R++D
Sbjct: 142 VMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCS 201
Query: 175 ------AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A KV D++L QPT++T+ LI LE VDEALKL ++M+ +KPD
Sbjct: 202 RGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS-RGLKPDMF 260
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++I+G+C G + A EM+RN
Sbjct: 261 TYNTIIRGMCKEGMVDRAF----EMIRN 284
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ II + + M D +++ L + + ++I N++ RA
Sbjct: 252 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMIRNL--ELKGCEPDVISYNILL---RA 303
Query: 101 RL----LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
L E ++ +M S V +++ L+ + GKI+ +L ++M EK ++PD
Sbjct: 304 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 363
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A SY+ L+ RL+ A + + M+ P +V + T++ LC + D+AL++
Sbjct: 364 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 423
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V P++ + ++ L + G+ AL EMV N I+ D
Sbjct: 424 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPD 468
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y R L+ ++ + M + VQ V +++ L+N + K++ DL
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G + +++ A + + +ML + P L+T+ TLIYGLC
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D MR+ +KPD + +LI G C G+L A +E MV+ I +D
Sbjct: 289 KGDLKQAQDLL-DEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLD 345
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + + A +F+EM + +F TL++ GK+
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKV 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + + Q++ + PD +YN L++G L+ A + DEM + L+P +T+ TL
Sbjct: 258 DSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
I G C E +D A +L+E M++ +++ D + +LI GLC G + A E+M+R
Sbjct: 318 IDGNCKEGDLDSAFELRETMVK-ESIRLDDVAYTALISGLCQEGRATDA----EKMLR 370
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 6/220 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A ++P Y Y ++I L + +E + +++ D +VP + F +I
Sbjct: 195 NAMHASGVQPDVYT---YSVLINGLCKESKMNEANDLFNEML-DKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++ + +M S + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G L+ A+++ + M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+M+ V +KPD + +I C ++ A +EM R
Sbjct: 371 EMLSV-GLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQR 409
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
FN L++ G+I +F + K+ + P S+N LM+G + L+ +K+ + M
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+QP + T+ LI GLC E +++EA L +M+ + P+ F +LI G C G++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLD-KGLVPNGVTFTTLIDGHCKNGKV 257
Query: 244 SLALGFKEEMV 254
A+ ++M+
Sbjct: 258 DSAMETYKQML 268
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y+++I L D ++L+QL D P I + +I ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL++ DEM S ++ + ++NT++ M G +DR ++ + +E K PD SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILL 305
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + E+ K+ +M + P +VT+ LI LC + +++EA+ L + +M+ +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PDA + LI C G L +A+ F E M+ +
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 31/278 (11%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR--------------- 48
+K P+ +S L + +L F N NPN +N + R
Sbjct: 17 SKTQKPYSNSSHGLLLSHNRSSLLTFSNSNPNNDNGRSFSSSGARNLQTTTTTDATLPTE 76
Query: 49 ------YNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGR 99
+L D + K+ R+ + LH L+ R P+ I+ +I +
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
R + A++V + + F Q V ++N L+N +ID T + M K SPD +
Sbjct: 137 LRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT 195
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNI++ +L+ A KV +++L QPT++T+ LI LE VDEALKL ++M+
Sbjct: 196 YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML 255
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+KPD + ++I+G+C G + A EMVRN
Sbjct: 256 S-RGLKPDMFTYNTIIRGMCKEGMVDRAF----EMVRN 288
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 103/215 (47%), Gaps = 6/215 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y+ YD +I R D + L + D +P+ + + V++ +
Sbjct: 362 KGLTPDAYS---YDPLIAAFCREGRLDVAIEFLETMISDG-CLPDIVNYNTVLATLCKNG 417
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYN 160
+ AL++F ++ S+NT+ +A+ + G KI + + ++M + PD +YN
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ +++A+++ +M P++VT+ ++ G C R+++A+ + E M+
Sbjct: 478 SMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG- 536
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+P+ + LI+G+ G + A+ ++VR
Sbjct: 537 NGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P+ + +I+ + + ++ A +V D M S + ++N ++ ++ + GK+D +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q++ P +Y IL+ ++ +++A K+ DEML R L+P + T+ T+I G+C
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
E VD A ++ + + + +PD + L++ L G+
Sbjct: 276 EGMVDRAFEMVRN-LELKGSEPDVISYNILLRALLNQGK 313
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ II + + M D +++ L + + ++I N++ RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGSEPDVISYNILL---RA 307
Query: 101 RL----LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
L E ++ +M S V +++ L+ + GKI+ +L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A SY+ L+ RL+ A + + M+ P +V + T++ LC + D+AL++
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V P++ + ++ L + G+ AL EM+ N I+ D
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 112/210 (53%), Gaps = 7/210 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I RA D ++L +K + +VP++ + I F ++ +E A ++
Sbjct: 326 DLITYNSLIAGQCRAGHLDSAYRLLSLMK-ERGLVPDQRTYGCFIDFLCKSNRVEEARRL 384
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
FD ++ V V ++ L++ GK+D LF+ ++ K SP+A ++N L+HG
Sbjct: 385 FDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCS 444
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L++A +FD+M+K L+PT+ TF LI + + D+A K + MM KP A+
Sbjct: 445 AGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSS-GEKPVAR 503
Query: 229 VFASLIKGLCAVGELSLA----LGFKEEMV 254
+ + I+ C+ G++ A + KEE V
Sbjct: 504 TYNAFIEVYCSAGKVQEAEDMMVQMKEEGV 533
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 122/279 (43%), Gaps = 44/279 (15%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P ++SL L DP ALQ + PN F++N+ Y ++T + K+
Sbjct: 67 TPSHVSSLFSLNLDPHTALQFSYWISQTPN---------FKHNVDSYASLLTLIDHHKIV 117
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNV--------------------ISFYGRARLLEHAL 107
+V +I+ + P+ + ++ ++ R L++
Sbjct: 118 SDVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMN 177
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
Q++ EM V + +FN ++N G + ++++ +SPD + + G
Sbjct: 178 QLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGY 237
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL----KEDMMRVYN 222
S+ ++ A++VF+EM R V++ LI+GLC R+DEA+ L K+D
Sbjct: 238 CRSKDVDSAFRVFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDC----- 288
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ + +LIKGLC + A+G +EM+ + D
Sbjct: 289 CYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPD 326
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 114/276 (41%), Gaps = 76/276 (27%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++L+I + E +Q + ++ + P+ + I Y R++ ++ A +V
Sbjct: 191 DIYTFNLMINVYCKMGFVKEAKQFMCKMIQ-AGLSPDYFTSTSFILGYCRSKDVDSAFRV 249
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF------------------------ 145
F+EM + R S+N L++ + G+ID LF
Sbjct: 250 FEEMPN----RNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR 305
Query: 146 -----------QIMEKYVSPDACSYNILM------------------------------H 164
+++E+ + PD +YN L+ +
Sbjct: 306 KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTY 365
Query: 165 GCVV-----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
GC + S R+E+A ++FD + + + ++ + LI G C +VDEA L E M+
Sbjct: 366 GCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLS 425
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
N P+A F +LI GLC+ G L AL ++MV+
Sbjct: 426 -KNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVK 460
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 32/219 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I A E + ++ Q+K + V P++ + ++I YG+ L A V M
Sbjct: 505 YNAFIEVYCSAGKVQEAEDMMVQMKEEG-VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM 563
Query: 114 SSFNVQRTVKSFNTLL-----------------------------NAMLTCGKIDRMTDL 144
+ + + +F +L+ + M + D + +L
Sbjct: 564 FDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIEL 623
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ MEK+ +PD+ Y L+ G L A K+ D+M K + P+ + F +I C
Sbjct: 624 FEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCK 683
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ EA + EDM+ P + +LI GL GE
Sbjct: 684 LQKYGEAANIVEDMI-CSGHSPQLEHCKTLICGLYEEGE 721
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 3/196 (1%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+ D +ILH++ + P++ + V+S A ++ A+ + EM + V +
Sbjct: 186 GRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALADAGRVDDAVALVHEMVADGVV-AAE 244
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +L AML G + LF M+ K P +YN+L+HG +V R A V M
Sbjct: 245 AFNPVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRM 304
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ + P ++T+G ++ GL RV +A K+ E+M R + + V++++I G C GE
Sbjct: 305 EREGVVPGVMTYGAVVDGLVRCGRVKDAWKVAEEMER-NGLAWNEFVYSTVITGFCKSGE 363
Query: 243 LSLALGFKEEMVRNKI 258
+ AL E MV + +
Sbjct: 364 IDCALKVWEAMVASPV 379
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L A D+ ++H++ D V E F V+ RA ++ A ++F M
Sbjct: 212 YSTVVSALADAGRVDDAVALVHEMVADGVVAAEA--FNPVLRAMLRAGDVKGAAKLFGFM 269
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
T ++N L++ +L CG+ + + ME+ V P +Y ++ G V R+
Sbjct: 270 QLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVDGLVRCGRV 329
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DAWKV +EM + L + T+I G C +D ALK+ E M+ V+P+ ++++
Sbjct: 330 KDAWKVAEEMERNGLAWNEFVYSTVITGFCKSGEIDCALKVWEAMV-ASPVRPNVVLYSA 388
Query: 233 LIKGLCAVGELSLALGFKEEMVRNK 257
+I GL G+++ A EM+ +K
Sbjct: 389 MIGGLANFGKMTEAELLFREMIHSK 413
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 2/214 (0%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N Y +IT ++ D ++ + + V P +++ +I + A
Sbjct: 346 WNEFVYSTVITGFCKSGEIDCALKVWEAMVA-SPVRPNVVLYSAMIGGLANFGKMTEAEL 404
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+F EM + ++ +++ G R +++ ++ P+A SY+IL++G
Sbjct: 405 LFREMIHSKCAPNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLC 464
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RL+DA V+ ML R P + + ++I GLC+ VD L+L DM+ + PD
Sbjct: 465 NVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDV 524
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ GL +L A+ M+ + D
Sbjct: 525 ISYNVLLDGLLLAKDLPRAMDLLNRMLDQGCDPD 558
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA P R N++ Y +I L E + + ++ H ++ P I + ++I Y +
Sbjct: 372 EAMVASPVRPNVVLYSAMIGGLANFGKMTEAELLFREMIH-SKCAPNIITYGSIIQGYFK 430
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
AL V++EM S++ L+N + G++ D M ++++ +PD +
Sbjct: 431 IGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIA 490
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y ++ G VS ++ ++F +ML P ++++ L+ GL L + A+ L M
Sbjct: 491 YTSMIKGLCVSGMVDGGLRLFYDMLASGHADPDVISYNVLLDGLLLAKDLPRAMDLLNRM 550
Query: 218 M 218
+
Sbjct: 551 L 551
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 186 RLQPTLVTFGTLIYGLCLEL-------RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
RL PTL++F L+ +C L +D AL++ +++ +++ PD +++++ L
Sbjct: 161 RLAPTLLSFNLLLKCVCSSLVPRDPGRYLDVALRILHEIIPGWDLAPDKFTYSTVVSALA 220
Query: 239 AVGELSLALGFKEEMVRNKI 258
G + A+ EMV + +
Sbjct: 221 DAGRVDDAVALVHEMVADGV 240
>gi|145360404|ref|NP_180348.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546772|sp|Q9ZUY1.2|PP173_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g27800, mitochondrial; Flags: Precursor
gi|330252952|gb|AEC08046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 442
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 24/267 (8%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++DP L LF N QP F + Y + I KLG AKM+
Sbjct: 138 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFTHENCSYHIAIRKLGAAKMY 188
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQ--RTVKS 124
E+ I++Q+ R + E ++ ++I ++ +A L A+ +F M +S N++ T+++
Sbjct: 189 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 247
Query: 125 FNTLLNAMLTCGK--------IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ L A+L G ++ + LF Q+++ + PD + N L+ G V+S + DA
Sbjct: 248 YHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDA 307
Query: 176 WKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++F +M + +P T+ LI+GLC + R A +L +M + P+ + + SL+
Sbjct: 308 LRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEM-KGKGFVPNGKSYNSLV 366
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ EM+ N +D
Sbjct: 367 NAFALSGEIDDAVKCLWEMIENGRVVD 393
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ V+ + Q+ D+ + P+ ++ Y + + AL++F +MS ++ + +++
Sbjct: 270 ETVRSLFRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYD 328
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ + G+ +L M+ K P+ SYN L++ +S ++DA K EM++
Sbjct: 329 YLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIEN 388
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ TL+ C + + DEA +L E M+R
Sbjct: 389 GRVVDFISYRTLVDESCRKGKYDEATRLLE-MLR 421
>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
Length = 382
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 6/211 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++++ L + K D+ ILH+++ D P + + ++I + + A ++F+ M
Sbjct: 51 YTVLLSGLWKEKRLDQALAILHEMR-DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHM 109
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRM--TDLFQIME-KYVSPDACSYNILMHGCVVSR 170
S V ++NTLL+ + GK++ +L + M+ + SPD + IL+ G
Sbjct: 110 KSVECSPLV-TYNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKES 168
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
++ AW+V EML P LVT +L++GLC RV +AL L D M P+ +
Sbjct: 169 KVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRD-MTCRGCTPNVVTY 227
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI GLC VG + A E M + + D
Sbjct: 228 GTLIDGLCKVGRVKDAGNLYEVMTGDGCDAD 258
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
+P A +LF++ + E PL YN L L T + M E+ + +
Sbjct: 98 EPDRAQELFEHMK----SVECSPL--VTYNTLLDGLFWTGKLESAMAVELLESMKARGCS 151
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
V+ I+ + + + A +V EM + + +LL+ + + R
Sbjct: 152 PDVITSTIL----VDGLCKESKVAAAWEVLCEMLDAGCVPNLVTSKSLLHGLC---RARR 204
Query: 141 MTDLFQIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
++D +M + +P+ +Y L+ G R++DA +++ M +VT+ T
Sbjct: 205 VSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTGDGCDADVVTYST 264
Query: 197 LIYGLCLELRVDEALKLKEDMMRV 220
LI GLC RVDEA L M+R+
Sbjct: 265 LIDGLCKGGRVDEAHLLLARMVRM 288
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 128/258 (49%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K ++A L++ ++D + A+ +F ++ A+ FR++ + L+I++L
Sbjct: 10 SKQIGSAQVAQLIKAERDIQKAIVIF-------DSATAEYTNGFRHSHQTFSLMISRLVS 62
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F +++L ++K + + E+I F ++ YGR A++VF +M + + + K
Sbjct: 63 ANHFRLAEELLCRMKEEKCNITEDI-FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQK 121
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
S+ T+ ++ ++ ++ M E + P S N+L+ C S ++ A ++F E
Sbjct: 122 SYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFRE 181
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M R P T+GTLI GLC ++ EA +L ++ M P + SLI GLC
Sbjct: 182 MPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKE-METKACSPTVVTYTSLIHGLCQSK 240
Query: 242 ELSLALGFKEEMVRNKIE 259
+L A+ EEM I+
Sbjct: 241 DLDSAIRLLEEMASKGIK 258
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 39/213 (18%)
Query: 84 VPEEIIFCNVI--SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+P + NV+ + + ++ AL++F EM + ++ TL+N + GKI
Sbjct: 151 IPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEA 210
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM------------------ 182
+LF+ ME K SP +Y L+HG S+ L+ A ++ +EM
Sbjct: 211 KELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDG 270
Query: 183 -----------------LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ RR P ++T+ TL++GLC E ++ EA+++ D M++ ++P
Sbjct: 271 HCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEIL-DRMKLQGLRP 329
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DA ++ +I G C + + A F +EMV I
Sbjct: 330 DAGLYGKIISGFCDICKFHEAANFLDEMVLGGI 362
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/242 (20%), Positives = 102/242 (42%), Gaps = 42/242 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R E +++ +++ P + + ++I +++ L+ A+++ +EM
Sbjct: 194 YGTLINGLCRLGKIGEAKELFKEMETKA-CSPTVVTYTSLIHGLCQSKDLDSAIRLLEEM 252
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+S ++ V ++++L++ G R +L +M + P+ +Y+ L+HG +L
Sbjct: 253 ASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKL 312
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------------- 217
++A ++ D M + L+P +G +I G C + EA ++M
Sbjct: 313 QEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLH 372
Query: 218 -------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
MR + DA+ F SL+ C G+L A +E
Sbjct: 373 VRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDE 432
Query: 253 MV 254
MV
Sbjct: 433 MV 434
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 3/223 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A +K + Y +I+ + + +E + ++ + +VP + + +I Y
Sbjct: 232 DAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMV-EIGLVPNAVTYNTLIDGYCN 290
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
LE A DEM + +V ++N L++A+ G++ D+ + M +K + PDA +
Sbjct: 291 KGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAIT 350
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G + A+ + +EML + ++PT VT+ +LIY L R+ EA L E ++
Sbjct: 351 YNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKIL 410
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD +F ++I G CA G + A +EM R + D
Sbjct: 411 D-QGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPD 452
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L++ L E ++ +++ ++P+ I + +I+ Y R + A + +EM
Sbjct: 316 YNLLVHALFMEGRMGEADDMIKEMRKKG-IIPDAITYNILINGYSRCGNAKRAFDLHNEM 374
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ T ++ +L+ + ++ DLF+ I+++ VSPD +N ++ G + +
Sbjct: 375 LSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNV 434
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+ + EM ++ + P VTF TL+ G C E +V+EA ++ D M+ +KPD + +
Sbjct: 435 ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEA-RMLLDEMKXRGIKPDHISYNT 493
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G++ A ++EM+
Sbjct: 494 LISGYGRRGDIKDAFXVRDEML 515
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 5/152 (3%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++FDE++ + +VKS +++ +L GK+ + + ME P+ SYN ++HG
Sbjct: 162 ELFDELTLSRDRLSVKS--SIVFDLLE-GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGY 218
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+E A ++ D M + ++P T+G+LI G+C E R++EA L + M+ + + P+
Sbjct: 219 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI-GLVPN 277
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
A + +LI G C G+L A +++EMV+ I
Sbjct: 278 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGI 309
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 9/207 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+DL+ KL +A+ F + L P + + +I Y +E A ++ D M
Sbjct: 182 FDLLEGKLKKAREFIGFMEGLG-------FKPNVVSYNTIIHGYSSRGNIEGARRILDAM 234
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
++ ++ +L++ M G+++ + LF +++E + P+A +YN L+ G L
Sbjct: 235 RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDL 294
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+ DEM+K+ + P++ T+ L++ L +E R+ EA + ++ MR + PDA +
Sbjct: 295 ERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE-MRKKGIIPDAITYNI 353
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
LI G G A EM+ IE
Sbjct: 354 LINGYSRCGNAKRAFDLHNEMLSKGIE 380
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 11/215 (5%)
Query: 52 LHYDLII---TKLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ Y+++I ++ G AK FD LH + P + + ++I R ++ A
Sbjct: 349 ITYNILINGYSRCGNAKRAFD-----LHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 403
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
+F+++ V V FN +++ G ++R L + M+ K V PD ++N LM G
Sbjct: 404 DLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 463
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++E+A + DEM R ++P +++ TLI G + +A ++++M+ + P
Sbjct: 464 CREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSI-GFNPT 522
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LIK LC E LA +EMV I D
Sbjct: 523 LLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPD 557
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 3/191 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R E + ++ D V P+ I+F +I + +E A + EM
Sbjct: 386 YTSLIYVLSRRNRMKEADDLFEKIL-DQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEM 444
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+V +FNTL+ GK++ L M+ + + PD SYN L+ G +
Sbjct: 445 DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDI 504
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA+ V DEML PTL+T+ LI LC D A +L ++M+ + PD + S
Sbjct: 505 KDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVN-KGISPDDSTYLS 563
Query: 233 LIKGLCAVGEL 243
LI+G+ V L
Sbjct: 564 LIEGMGNVDTL 574
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 109/188 (57%), Gaps = 7/188 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L YD++I K E + +L ++ D + PE I + +I + R +E A ++
Sbjct: 275 DLYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRI 333
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
DEM + ++ + +NTLLN + GK+++ ++ Q +MEK V PD+ +Y++L+ G
Sbjct: 334 KDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCR 393
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL--ELRVDEALKLKEDMMRVYNVKPD 226
+ + A+++ DEM KR+L PT++T+ +I GLC L+ A+ L+E +M +KP+
Sbjct: 394 GQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAI-LREMVMN--GLKPN 450
Query: 227 AQVFASLI 234
A V+ +L+
Sbjct: 451 AVVYTTLM 458
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I +AK +E + L ++ + R+ P + I Y +A +E A + F+EM
Sbjct: 489 YNSLIIGFCKAKRMEEARTYLMEML-ERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEM 547
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S V V + L+ G + +F+ I+ + V D +Y++L+HG + ++
Sbjct: 548 LSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKM 607
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+ +F E+ ++ L P T+ +LI G C + VD+A +L E+M + + PD +
Sbjct: 608 HEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMC-IKGINPDIVTYNI 666
Query: 233 LIKGLCAVGELSLA 246
LI GLC GE+ A
Sbjct: 667 LIDGLCKAGEIERA 680
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 2/222 (0%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K +++ Y+++I L +A + + + ++ + P + + ++ Y +
Sbjct: 650 EEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE-GRGLTPNCVTYAAMVDGYCK 708
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
++ A Q+ +EM V +N +LN K ++ DLFQ M + S+
Sbjct: 709 SKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSF 768
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ G S +L++A + +EM++++ P VT+ +LI C + EA +L +M
Sbjct: 769 NTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQE 828
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
NV P A+ + SL+ G +G +S EEMV IE D
Sbjct: 829 -RNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPD 869
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P I+ +I + + + A VF + S V + V++++ L++ + GK+
Sbjct: 552 VLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAF 611
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+F ++ EK + P+A +YN L+ G ++ A ++ +EM + + P +VT+ LI GL
Sbjct: 612 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 671
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ A L +D + + P+ +A+++ G C + A EEM+ + D
Sbjct: 672 CKAGEIERAKNLFDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 730
Query: 262 A 262
A
Sbjct: 731 A 731
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL--FQIMEKYVSPDA 156
+ARLL+ A+++ M + + +++ L+N K R L ++++ + P+
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCM-EKRSREAKLMLLEMIDVGLKPEP 311
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G + +E A+++ DEM+ ++ L+ + TL+ G+C ++++AL++ ++
Sbjct: 312 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 371
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
MM V+PD+Q ++ LI+G C ++ A +EM + K+
Sbjct: 372 MME-KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 412
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 103/234 (44%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ ++ + +A ++ +I+ ++ + V P+ + +I + R + + A ++
Sbjct: 345 NLIIWNTLLNGVCKAGKMEKALEIMQEM-MEKGVEPDSQTYSLLIEGHCRGQNMARAFEL 403
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
DEM + TV +++ ++N + CG + + + M
Sbjct: 404 LDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAK 463
Query: 149 ---------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
E+ + PD YN L+ G ++R+E+A EML+RRL+P T
Sbjct: 464 EGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHT 523
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+G I G ++ A + +M+ V P+ ++ +LI+G C G ++ A
Sbjct: 524 YGAFIDGYSKAGEMEIADRYFNEMLSC-GVLPNVGIYTALIEGHCKEGNVTEAF 576
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 11/229 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-S 95
++ E + L P N + Y ++ ++K Q+L ++ R VP + NVI +
Sbjct: 685 DDIEGRGLTP---NCVTYAAMVDGYCKSKNPTAAFQLLEEML--LRGVPPDAFIYNVILN 739
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSP 154
F + E AL +F EM TV SFNTL+ GK+ L + ++EK P
Sbjct: 740 FCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798
Query: 155 DACSYNILM-HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ +Y L+ H C + +A +++ EM +R + PT T+ +L++G + E L
Sbjct: 799 NHVTYTSLIDHNCKAGM-MGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSAL 857
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
E+M+ ++PD + +I C G + A K+E++ + M +
Sbjct: 858 FEEMV-AKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKS 905
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +IF ++ Y + L A+ VF +F + ++ S N+LL +L K++ +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211
Query: 145 FQIMEKY-VSPDACSY-NILMHGCVV----------------SRRLEDAWKVFDEMLKRR 186
F M + V PD +Y N++ C V +R L++A ++ M+ +
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
L P L T+ LI G C+E R EA + +M+ V +KP+ + +LI G G++ A
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV-GLKPEPITYNALIDGFMRQGDIEQA 330
Query: 247 LGFKEEMVRNKIEMD 261
K+EMV IE +
Sbjct: 331 FRIKDEMVACGIEAN 345
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-----------------DRMTDLFQIM-E 149
+VFD M + V V ++ +++A G + D +L + M +
Sbjct: 210 KVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVD 269
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
K + PD +Y+IL++G + +R +A + EM+ L+P +T+ LI G + +++
Sbjct: 270 KGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQ 329
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
A ++K++M+ ++ + ++ +L+ G+C G++ AL +EM+ +E D+
Sbjct: 330 AFRIKDEMVAC-GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDS 381
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 30/237 (12%)
Query: 21 DPKLALQLF---KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
+P+ AL+LF K N PNN Y +I+ RA + I ++
Sbjct: 438 EPERALKLFQEMKEANVKPNN-------------YCYSSLISAFCRAGYVERALAIFEEM 484
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
H+ R+VP+ F +I +G+ R ++ A +++D M +Q +FN L++A GK
Sbjct: 485 THE-RIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISA---SGK 540
Query: 138 -------IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
++ M D+ +I ++PD SYN L+ C S A++VF+EM + ++P
Sbjct: 541 AKNSIRALEAMGDMTEIYG--LTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPC 598
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
VTF LIYG + + K+ D+M + PDA +LI +LS A
Sbjct: 599 TVTFNALIYGASRSHDLAASFKIV-DLMLQEGLNPDAYTMNTLISACNRRQDLSTAF 654
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 7/210 (3%)
Query: 50 NLLHYDLIITKLGRAKMFD-----EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
N + Y+ +I + R K D +L ++ +P+ + + +I + + E
Sbjct: 382 NTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKG-CIPDVVTYATLIDAFSKRMEPE 440
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
AL++F EM NV+ +++L++A G ++R +F+ M + + PD ++N L+
Sbjct: 441 RALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALI 500
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+++ A++++D M K ++QP +TF LI AL+ DM +Y +
Sbjct: 501 DGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGL 560
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI G+ + A EEM
Sbjct: 561 TPDRHSYNALIDACGKSGDFTKAYEVFEEM 590
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 8/195 (4%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y + + +I+ R + ++L + K V P+ + F I G+
Sbjct: 628 EGLNPDAYTM---NTLISACNRRQDLSTAFEVLEKFKQ-LGVHPDNVTFNTFIDAVGKLD 683
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
E ++ EM S + + + NT++ GKID M F + EK + PD+ +++
Sbjct: 684 SSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEPDSVTFS 743
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED---M 217
+L+ V L+ A + +++L+ L+ L + ++ A + +D +
Sbjct: 744 LLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMHLLESLIRKDEIEVAKLILKDYPFL 803
Query: 218 MRVYNVKPDAQVFAS 232
MR ++++ D Q S
Sbjct: 804 MRHFSLEDDRQTTRS 818
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 44/217 (20%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDE------------------ 181
L M+ V PD +Y++L++G +++DA ++FDE
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLID 249
Query: 182 -----------------MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
ML + L P L+T+ TLIYGLC + + +A L D M + +K
Sbjct: 250 GHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLI-DEMSMKGLK 308
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI G C G+L AL +++ M++ I +D
Sbjct: 309 PDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLD 345
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMDDANELFDEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + + A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A + M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|388512253|gb|AFK44188.1| unknown [Medicago truncatula]
Length = 376
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 6/225 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYG 98
+A + FR Y+ + +L AK F V+ I+ HQ + + E +I+ YG
Sbjct: 42 KASDIDRFRKKNGIYEDTVRRLAGAKRFRWVRDIIEHQKSYAD--ISNEGFSARLITLYG 99
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDA 156
++ + HA ++FDEM N +R+V S N LL A L + D + LF+ + + V PD
Sbjct: 100 KSNMHRHAQKLFDEMPQRNCERSVLSLNALLAAYLHSKQYDVVERLFKKLPVQLSVKPDL 159
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
SYN + + + A V +EM K ++ L+TF TL+ GL + R ++ KL E
Sbjct: 160 VSYNTYIKALLEKGSFDSAVSVLEEMEKDGVESDLITFNTLLDGLYSKGRFEDGEKLWEK 219
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ NV P+ + + + + GL A+ F EEM + ++ D
Sbjct: 220 LGE-KNVVPNIRTYNARLLGLAVAKRAGEAVEFYEEMEKKGVKPD 263
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 101/193 (52%), Gaps = 6/193 (3%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+K +D V+++ +L V P+ + + I + A+ V +EM V+ +
Sbjct: 136 SKQYDVVERLFKKLPVQLSVKPDLVSYNTYIKALLEKGSFDSAVSVLEEMEKDGVESDLI 195
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNTLL+ + + G+ + L++ + EK V P+ +YN + G V++R +A + ++EM
Sbjct: 196 TFNTLLDGLYSKGRFEDGEKLWEKLGEKNVVPNIRTYNARLLGLAVAKRAGEAVEFYEEM 255
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
K+ ++P L +F LI G E +DEA K ++ + + P + +A ++ LC G+
Sbjct: 256 EKKGVKPDLFSFNALIKGFANEGNLDEAKKWFGEIEKSEH-DPSKRTYAIIVPFLCEKGD 314
Query: 243 LSLALGFKEEMVR 255
L A+ EMV+
Sbjct: 315 LKTAI----EMVK 323
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +I+ +I + +E A +F EM F + ++ L++ + G + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M+++ V P+ +YN +M+ R +DA+KVFDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E++ +EA K+ D M+ Y + P+ + +LI G C+VG+L AL
Sbjct: 316 EMKANEANKVM-DQMKSYVINPNLITYNTLIDGFCSVGKLGKAL 358
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 99/211 (46%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I + + LK + P + + ++S + R A ++
Sbjct: 337 NLITYNTLIDGFCSVGKLGKALSLCRDLK-SRGLSPSLVTYNVLVSGFCRKGDTSGAAKM 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM ++ + ++ L++ ++ L ME+ + PD +Y++L+HG +
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCI 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ +A ++F M+++ L+P V + T+I G C E AL+L DM + P+
Sbjct: 456 KGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEE-KELAPNVA 514
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ LI+ LC +L A E+M+ + I+
Sbjct: 515 SYSYLIRVLCKERKLKEAEDLVEKMIDSGID 545
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 38/197 (19%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDA 156
GR + A +VFDEM V + ++NTL+ + K + + M+ YV +P+
Sbjct: 282 GRTK---DAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNL 338
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G +L A + ++ R L P+LVT+ L+ G C + A K+ ++
Sbjct: 339 ITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKE 398
Query: 217 M----------------------------------MRVYNVKPDAQVFASLIKGLCAVGE 242
M M + PD ++ LI G C G+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 243 LSLALGFKEEMVRNKIE 259
++ A + MV +E
Sbjct: 459 MNEASRLFKSMVEKMLE 475
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 1/171 (0%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F +LH L + ++ +I+ Y +++ L+ ++ F+EM FN
Sbjct: 74 FFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFN 133
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LL ++ ++ F + V D S+ I++ GC + +E ++ + E+ +
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG 193
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
P +V + TLI G C + +++A L +M + + + + + LI GL
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK-FGLVANEWTYTVLIHGL 243
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ ++NA + +D F ++++K P + +N L+ V S W F+E
Sbjct: 97 YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNES- 155
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K ++ + +FG +I G C ++++ L ++ R + P+ ++ +LI G C GE+
Sbjct: 156 KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVEL-REFGFSPNVVIYTTLIDGCCKKGEI 214
Query: 244 SLA 246
A
Sbjct: 215 EKA 217
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHSFVKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M+ V PD +Y++L++G ++EDA ++F+EML L P VTF TLI
Sbjct: 190 GFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RV A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKNGRVXLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N +A ++P Y Y ++I L + ++ ++ ++ D +VP + F +I
Sbjct: 195 NAMQASGVQPDVYT---YSVLINGLCKESKMEDANELFEEM-LDNGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + + A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 251 HCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A M+K ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KP+ + +I C G++ +EM R+
Sbjct: 371 EMLSV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 104/197 (52%), Gaps = 5/197 (2%)
Query: 69 EVQQILHQLK---HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+ ++L +LK ++P+ + I + +AR + A +VF+EM + ++
Sbjct: 222 DAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTY 281
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N +++ + G ++ + M Y +SPDA +Y LM+G RL++A + DEM
Sbjct: 282 NVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSC 341
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
L+P +V +GTL+ G E + EA + ++M+ V+P+ ++ +LI+GLC +G+L
Sbjct: 342 SGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISA-GVQPNKIMYDNLIRGLCKIGQLG 400
Query: 245 LALGFKEEMVRNKIEMD 261
A +EM++ + D
Sbjct: 401 RASKLLKEMIKVGLRPD 417
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L + E + +L ++ + + P +++ ++ + + A + EM
Sbjct: 316 YGALMNGLCKGSRLKEAKALLDEMSC-SGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEM 374
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S VQ ++ L+ + G++ R + L + M K + PD +YN LM G
Sbjct: 375 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDK 434
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+++ +EM + P + ++G +I GLC EA L E+M+ +KP+A ++A
Sbjct: 435 DGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAP 493
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G G +SLA E+M + + D
Sbjct: 494 LIIGHSKEGNISLACEALEKMTKANVHPD 522
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R++ + +L +++ + +VP+ I+ ++IS + +E A+ + DEM
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNG-LVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N L++ G I R ++F I+ K + P+ +Y L+ G + +
Sbjct: 690 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDI 749
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFA 231
DA+ ++ EML R + P + L G +++AL L E+M R Y + +F
Sbjct: 750 TDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY---ANVSLFN 806
Query: 232 SLIKGLCAVGEL 243
+L+ G C G+L
Sbjct: 807 TLVHGFCKRGKL 818
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I+ L R+ +E ++ D + P+ + +++ + L+ A +
Sbjct: 277 NEVTYNVMISGLCRSGAVEEAFGFKEEMV-DYGLSPDAFTYGALMNGLCKGSRLKEAKAL 335
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEMS ++ + + TL++ + GK D+ +++ V P+ Y+ L+ G
Sbjct: 336 LDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCK 395
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L A K+ EM+K L+P T+ L+ G + D A +L +M R + P+
Sbjct: 396 IGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEM-RNSGILPNVY 454
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +I GLC GE A EEM+ ++ +A
Sbjct: 455 SYGIMINGLCQNGESKEAGNLLEEMISEGLKPNA 488
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/245 (19%), Positives = 108/245 (44%), Gaps = 36/245 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + E +L ++ + + P ++ +I + + + A +
Sbjct: 452 NVYSYGIMINGLCQNGESKEAGNLLEEMISEG-LKPNAFMYAPLIIGHSKEGNISLACEA 510
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++M+ NV + +N+L+ + T G+++ + + Q+ ++ + PD +Y+ L+HG
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM--------RV 220
+ LE A ++ +ML L+P T+ L+ G ++ + + M+ +
Sbjct: 571 TGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHI 630
Query: 221 YNVK--------------------------PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y + PD +++SLI GLC + ++ A+G +EM
Sbjct: 631 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMA 690
Query: 255 RNKIE 259
+ +E
Sbjct: 691 KEGLE 695
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 6/211 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y ++ ++ +++V IL + + P+ I+ VI R+ +
Sbjct: 589 LKP---NADTYTDLLEGYFKSNDYEKVSSILQSML-GSGDKPDNHIYGIVIRNLSRSENM 644
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNIL 162
E A V E+ + + +++L++ + +++ L M K + P YN L
Sbjct: 645 EVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNAL 704
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G S + A VFD +L + L P VT+ LI G C + +A L ++M+
Sbjct: 705 IDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLD-RG 763
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ PDA V+ L G +L AL EEM
Sbjct: 764 IAPDAFVYNVLATGCSDAADLEQALFLTEEM 794
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
QP K NL+ I +LGRA K+ E+ ++ + P+ + ++ + +
Sbjct: 380 QPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKV--------GLRPDTFTYNPLMQGHFQQ 431
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSY 159
+ A ++ +EM + + V S+ ++N + G+ +L + ++ + + P+A Y
Sbjct: 432 HDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 491
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ G + A + ++M K + P L + +LI GL R++EA + + +
Sbjct: 492 APLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQK 551
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD ++ LI G C G L A +M+ + ++ +A
Sbjct: 552 -RGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNA 593
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ + + +E WK+ M + P + T+ T I C D A K+ E+M R
Sbjct: 212 NGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + + +I GLC G + A GFKEEMV + DA
Sbjct: 272 -RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDA 313
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
K R N++ Y ++ L + +++ ++L + ++ P I + ++ +F ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK-RKITPNVITYSALLDAFVKNGKVL 277
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A ++F+EM ++ + ++++L+N + +ID +F +M K PD SYN L
Sbjct: 278 E-AKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++R+ED K+F +M +R L VT+ TLI G VD+A + M +
Sbjct: 337 INGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQM-DSFG 395
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + L+ GLC G L AL E+M ++++++D
Sbjct: 396 VSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLD 434
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 100/193 (51%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L DE Q + L P+ + + +I+ + +A+ +E +++
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQ-MFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKL 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +MS + ++NTL+ G +D+ + F M+ + VSPD +YNIL+ G
Sbjct: 353 FRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCD 412
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F++M K + +VT+ T+I G+C +V++A L + + +KPD
Sbjct: 413 NGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCS-LSLKGLKPDIV 471
Query: 229 VFASLIKGLCAVG 241
+ +++ GLC G
Sbjct: 472 TYTTMMSGLCTKG 484
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + R + AL F E+ ++ V ++ L+N + G+ + L
Sbjct: 188 PDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARL 247
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M ++ ++P+ +Y+ L+ V + ++ +A ++F+EM++ + P +VT+ +LI GLCL
Sbjct: 248 LRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R+DEA ++ D+M PD + +LI G C
Sbjct: 308 HDRIDEANQM-FDLMVSKGCFPDVVSYNTLINGFC 341
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++++ + R + A+ + D+M + + ++N +++++ +++ D
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDF 212
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +I K + P+ +Y L++G S R DA ++ +M+KR++ P ++T+ L+
Sbjct: 213 FKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVK 272
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+V EA ++ E+M+R+ ++ PD ++SLI GLC
Sbjct: 273 NGKVLEAKEIFEEMVRM-SIDPDIVTYSSLINGLC 306
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK ++ ++ ++ +V + + +I + + ++ A +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFRKMSQRG-LVNNTVTYNTLIQGFFQVGDVDKAQEF 387
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M SF V + ++N LL + G +++ +F+ M+K + D +Y ++ G
Sbjct: 388 FSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCK 447
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC----------LELRVDEALKLKEDMM 218
+ ++EDAW +F + + L+P +VT+ T++ GLC L ++ + +K D M
Sbjct: 448 TGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSM 507
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALG 248
D + A LIK + + G LG
Sbjct: 508 LCLG-DGDITISAELIKKMLSCGYAPSLLG 536
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 20 KDPKL--ALQLFK---NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+D KL A+ LF+ P P+ + L + YD++I+ LG+ KM EV I
Sbjct: 62 RDIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVIS-LGK-KM--EVLGIR 117
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ L + +V C +S AL V +M + + +L+N
Sbjct: 118 NDL-YTFNIVINCFCCCFQVSL---------ALSVLGKMLKLGYEPDRVTIGSLVNGFC- 166
Query: 135 CGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +R++D +++K V PD +YN ++ +RR+ DA F E+ ++ ++P
Sbjct: 167 --RRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPN 224
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ L+ GLC R ++A +L DM++ + P+ +++L+ G++ A
Sbjct: 225 VVTYTALVNGLCNSGRWNDAARLLRDMIK-RKITPNVITYSALLDAFVKNGKVLEAKEIF 283
Query: 251 EEMVRNKIEMD 261
EEMVR I+ D
Sbjct: 284 EEMVRMSIDPD 294
>gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp.
lyrata]
Length = 1056
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
QK AL+ F+ + P F ++ Y + KL + FD V Q+L ++
Sbjct: 41 QKSASGALETFRWASTFPG---------FIHSRSTYRALFYKLCVFRRFDTVYQLLDEMP 91
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
T + P++ IF +I +GRARL + + V D +S F ++ ++K FN++L+ ++ I
Sbjct: 92 ESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDI 150
Query: 139 DRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
D + F ++M + D +Y ILM G ++ R+ D +K+ M + P V + T
Sbjct: 151 DIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYNT 210
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L++ LC +V A L +M +P+ F LI C
Sbjct: 211 LLHALCKNGKVGRARSLMSEMK-----EPNDVTFNILISAYC 247
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + V +NTLL+A+ GK+ R L M++ P+ ++NIL+ ++L
Sbjct: 196 MKTCGVAPNTVVYNTLLHALCKNGKVGRARSLMSEMKE---PNDVTFNILISAYCNEQKL 252
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ + ++ L P +VT ++ LC E RV EAL++ E + K D +
Sbjct: 253 IQSMVLLEKCFSLGLVPDVVTVTKVMEVLCNEGRVSEALEVLE-RVESKGGKVDVVACNT 311
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
L+KG CAVG++ +A F +EM R
Sbjct: 312 LVKGYCAVGKMRVAQRFFQEMER 334
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ + V+ + AL+V + + S + V + NTL+ GK+
Sbjct: 267 LVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQ 326
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
FQ ME K P+ +YN+L+ G L+ A F++M ++ TF TLI GL
Sbjct: 327 RFFQEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGL 386
Query: 202 CLELRVDEALKLKE---DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ R D+ +K+ E D V+ + D + S+I G AL F
Sbjct: 387 SVRGRTDDGIKILELMQDSETVHGARIDP--YNSVIYGFYKENRWEDALEF 435
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 11/220 (5%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLK-----HDTRVVPEEIIFCNVISFYGRARL 102
R+N ++ +I L D+ +IL ++ H R+ P + + FY R
Sbjct: 373 RWNFATFNTLIRGLSVRGRTDDGIKILELMQDSETVHGARIDPYNSV---IYGFYKENRW 429
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
E AL+ +M + +SF L++ G D T Q+ + P + L
Sbjct: 430 -EDALEFLLKMEKLFPRAVDRSFK-LISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCL 487
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H +E+ ++ ++M+ R P TF +I G C E +V +K EDM
Sbjct: 488 IHRYSQEGYMEETLELINDMVTRGYLPRSSTFNAVIIGFCKEDKVMNGIKFVEDMAERGC 547
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V PD + + L++ LC G++ A MV I D+
Sbjct: 548 V-PDRESYNPLLEELCVKGDIQKAWLLLSLMVEKSIVPDS 586
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 44/201 (21%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
FC+V +L+ AL F++M + ++ +FNTL+ + G+ D + ++M+
Sbjct: 351 FCDV-------GMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVRGRTDDGIKILELMQ 403
Query: 150 KYVSPDACS---YNILMHGCVVSRRLEDAWK----------------------------- 177
+ YN +++G R EDA +
Sbjct: 404 DSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGGMD 463
Query: 178 ----VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+D+M P+++ LI+ E ++E L+L DM+ P + F ++
Sbjct: 464 DVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMV-TRGYLPRSSTFNAV 522
Query: 234 IKGLCAVGELSLALGFKEEMV 254
I G C ++ + F E+M
Sbjct: 523 IIGFCKEDKVMNGIKFVEDMA 543
>gi|449479641|ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 46/248 (18%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK--HDTRVVPEEIIFCNVIS 95
NTE+Q FR+ +D + L K F ++ I+ K D +V E +I
Sbjct: 64 NTESQR---FRHKKGTFDSTVRLLAVRKKFSLIEDIIEAQKKYEDIKV---EGFATRLIK 117
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-- 153
YG+A + HA ++FDE+ N +RTVKSFN+LL + + + D++ +F+ + + VS
Sbjct: 118 LYGKAGMFSHARKLFDELPELNCERTVKSFNSLLASCVKSKEFDQVEKIFREVPQEVSIK 177
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-------------- 199
D SYNI+++ L+ A F +M K ++P LVTF TL+
Sbjct: 178 ADVISYNIVINAFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLTALYRKGQFFDGERV 237
Query: 200 ---------------------GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
G+ LE R+ + ++L M +KPD + LIKG C
Sbjct: 238 WATMENKNIAPDLVSYNARLRGMVLEKRIQDGIELLAKMEE-KEIKPDVYSYNILIKGFC 296
Query: 239 AVGELSLA 246
G+L A
Sbjct: 297 QDGDLEEA 304
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 105/206 (50%), Gaps = 10/206 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ ++K FD+V++I ++ + + + I + VI+ + L+ A+ F +M
Sbjct: 147 FNSLLASCVKSKEFDQVEKIFREVPQEVSIKADVISYNIVINAFCEMDALDKAILFFHDM 206
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + +FNTLL A+ G+ ++ ME K ++PD SYN + G V+ +R+
Sbjct: 207 EKNGMEPNLVTFNTLLTALYRKGQFFDGERVWATMENKNIAPDLVSYNARLRGMVLEKRI 266
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQ 228
+D ++ +M ++ ++P + ++ LI G C + ++EA KLKE V P A
Sbjct: 267 QDGIELLAKMEEKEIKPDVYSYNILIKGFCQDGDLEEAKKWYYKLKES-----EVDPIAT 321
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ LC G+ L +E +
Sbjct: 322 TYRILLPLLCEQGDFDSGLQLCKEAI 347
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 6/194 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +++ L R+ ++ +Q+L ++K + VP++ I+ +IS Y +A+ A + EM
Sbjct: 13 FAILLRGLCRSNQLEKARQLLGRMK-EMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ TV ++ +++ + G+ D + L ++ +K SP+ +YN+++ G R+L
Sbjct: 72 VKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 131
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A K+ +EM R P +VT+ + I GLC RVDEA K M V PD + +
Sbjct: 132 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM----PVTPDVVSYTT 187
Query: 233 LIKGLCAVGELSLA 246
+I GLC G+L A
Sbjct: 188 VINGLCKSGDLDSA 201
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P +++ Y +I L ++ D ++L Q+ + P+ + + ++I + + +E
Sbjct: 177 PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTN-RGCTPDVVTYSSLIDGFCKGGEVER 235
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A+ + D M + + ++N+LL A+ G I + D+ ME+ +PD SYN +
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + R++ A VFD M++R P ++ L+ LC + +D+A+ L E Y +
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQI- 354
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D ++ L+ GLC G A +++ KI
Sbjct: 355 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 388
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 4/212 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y I+ L +A + ++L +++ D P + ++ R L+ A ++
Sbjct: 79 TVVTYTNIVDGLCKAGRTKDAVKLLDEMR-DKGCSPNIYTYNVIVEGLCEERKLDEAKKM 137
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+EM+ V ++N+ + + C ++D M V+PD SY +++G S
Sbjct: 138 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKS 195
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L+ A ++ D+M R P +VT+ +LI G C V+ A+ L + M+++ +P+
Sbjct: 196 GDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-GCRPNMVA 254
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SL+ L +G + A EM R D
Sbjct: 255 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 286
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +++ +L + K D+ ++ Q + ++V + +++ ++ + + A +
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVEQAREKYQIV-DILLYTVLLDGLCKGGRFDEACAL 379
Query: 110 FDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
F ++ + + V +N +L++ +ID+ + + M + + ++NIL+HG V
Sbjct: 380 FSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCV 439
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL DA + M+ P VT+GTL+ +C + AL+L E+ ++ V PD
Sbjct: 440 DDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV-PDVV 498
Query: 229 VFASLIKGL 237
+++LI GL
Sbjct: 499 TYSALITGL 507
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
++L Y +++ L + FDE + ++ D ++ ++ F NV + + + R ++ ALQ
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKV-LDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 414
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMH 164
+ +M N V ++N L++ + DR++D L ++++ PD +Y L+
Sbjct: 415 IHKQMLERNCCNVV-TWNILVHGLCV---DDRLSDAETMLLTMVDEGFIPDFVTYGTLVD 470
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ A ++F+E +K P +VT+ LI GL E +EA L K
Sbjct: 471 AMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLL--------FTK 522
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D ++ ++I G G L L E++ + +E +A
Sbjct: 523 LDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNA 560
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M+ + QP TF L+ GLC ++++A +L M + V PD ++ +LI G
Sbjct: 1 MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCV-PDDAIYNALISGYSKAK 59
Query: 242 ELSLALGFKEEMVRN 256
+ A F EMV+N
Sbjct: 60 DFGQAFKFLAEMVKN 74
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 8/203 (3%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L+ Y ++ L R K F + +L ++ D + P+ I+ +I+ + + ++ A+++F
Sbjct: 95 LITYTTLVAALTRQKRFKSIPALLSKVA-DNGMKPDSILLNAMINAFSDSGKVDEAMKIF 153
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVV 168
+M + + T ++NTL+ G+ L ++M ++ V P+ +YNIL+
Sbjct: 154 QKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYNILIQAWCT 213
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTL--IYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++LE+AW V +M+ +QP +VT+ T+ Y E E L LK M+ VKP+
Sbjct: 214 KKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILK---MQYNKVKPN 270
Query: 227 AQVFASLIKGLCAVGELSLALGF 249
+ +I G C G ++ AL F
Sbjct: 271 ERTCGIIISGYCKEGNMTEALRF 293
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 3/182 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+II+ + E + L+++K + V P ++F ++I Y A + M
Sbjct: 276 IIISGYCKEGNMTEALRFLYRMK-ELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEE 334
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
F ++ V +F+T++NA + G +D ++F M K + PD +Y+IL G V + +
Sbjct: 335 FGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRK 394
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A + M K +Q +V F T+I G C ++D A L E M + P+ + + +LI
Sbjct: 395 AESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEM-GTSPNLKTYETLI 453
Query: 235 KG 236
G
Sbjct: 454 WG 455
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 100/205 (48%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ + + ++ ++++ +++++ +V P E +IS Y + + AL+
Sbjct: 235 DVVTYNTMARAYAQNGETEKAERLILKMQYN-KVKPNERTCGIIISGYCKEGNMTEALRF 293
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
M V FN+L+ L + + + +ME++ + PD +++ +M+
Sbjct: 294 LYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSS 353
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ ++F++M+K ++P + + L G + +A L M + Y V+ +
Sbjct: 354 AGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSK-YGVQTNVV 412
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+F ++I G CA G++ A E+M
Sbjct: 413 IFTTIISGWCAAGKMDRAFSLCEKM 437
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 2/168 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVS 153
+ G+ + E A VF ++ + T+ ++ TL+ A+ + + L ++ + +
Sbjct: 69 ALIGKGKPHE-AQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMK 127
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD+ N +++ S ++++A K+F +M + +PT T+ TLI G + R E++KL
Sbjct: 128 PDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKL 187
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
E M + NVKP+ + + LI+ C +L A +MV + I+ D
Sbjct: 188 LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD 235
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVLMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L ++ G+ F +++ + + P ++N+++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G C +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVE-MKGKNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + +SPD +YN +++G +++E+A K F EM + ++PT+VT+ TLI G
Sbjct: 171 RFFEDMKSREISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +KP+A +++L+ GLC ++S A +EMV I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYCRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ Y + P+A +Y+ L+ G + ++ +A + EM+ + + PT + F LI
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKVGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDI 357
>gi|255561325|ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539064|gb|EEF40660.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 8/198 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR--ARL 102
K ++ N Y L+I KL +AK FD ++ I+ ++K + F NVI YG R+
Sbjct: 24 KDYKPNEALYTLVINKLAQAKNFDAIEDIMQRIKLEKSCRLSNGFFYNVIKIYGHLAGRI 83
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ---IMEKYVSPDACSY 159
+FD +N VK+FN +LN +++ D + ++++ I+ V DAC
Sbjct: 84 KVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILG--VEIDACCL 141
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NIL+ G + LE A+ V DE K+R +P + TF TL++ LC + V++A L D M
Sbjct: 142 NILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLL-DRME 200
Query: 220 VYNVKPDAQVFASLIKGL 237
++ D F LI GL
Sbjct: 201 NEGIEVDTITFNILISGL 218
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R P F ++ + + A + D M + ++ +FN L++ + G+I+
Sbjct: 168 RCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTITFNILISGLRKRGRIEEG 227
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+L M+ K P+A SY +++G + + + +A D M+ P+ V++ LI G
Sbjct: 228 MELLVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEAKDFMDRMVCEGNGPSFVSYKKLIDG 287
Query: 201 LCLELRVDEALKLKEDMMR 219
LC E + E + + M++
Sbjct: 288 LCKEKLIGEVDCVLKQMLK 306
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 113/220 (51%), Gaps = 3/220 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ F N + Y+ +I+ L + +E ++ L ++P+ F ++I
Sbjct: 379 LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTNNH 437
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
A+++F+EM + ++N L++++ + G+++ L + ME S + +YN L
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G ++R+E+A ++FDEM + + +VT+ TLI GLC RV+EA +L D M +
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLM-DQMLMEG 556
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+KPD + SL+ C G++ A + M N E D+
Sbjct: 557 LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDS 596
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 85 PEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + NV + Y + +E L DEMS+ + +FN+L+N + G + +
Sbjct: 278 PSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALE 337
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ +M ++ PD +YN L+ G +E+A ++ ++M+ R P VT+ TLI LC
Sbjct: 338 ILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLC 397
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E +V+EA +L ++ + PD F SLI+GLC LA+ EEM
Sbjct: 398 KENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEM 447
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 120/291 (41%), Gaps = 48/291 (16%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P +L LR Q D L L + PN F + + Y+ ++ KLG+ F
Sbjct: 71 TPKQLRDALRRQSDEDSILDLLDWASKQPN---------FVPSSVIYEEVLRKLGKDGSF 121
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD---------------- 111
++++L ++KH T F +I Y + L + A+ V D
Sbjct: 122 GSMRRVLQEMKH-TGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYN 180
Query: 112 --------------------EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
M S ++ V +FN L+ A+ +I + + M Y
Sbjct: 181 FLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSY 240
Query: 152 -VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+SPD ++ LM G + + A ++ ++M+ + VT L++G C E R++E
Sbjct: 241 GLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEV 300
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L ++M +PD F SL+ GLC +G + AL + M++ + D
Sbjct: 301 LSFIDEMSN-EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPD 350
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ F +I RA + A+ + +EM S+ + K+F TL+ + G ++
Sbjct: 207 IKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGAL 266
Query: 143 DLFQIMEKYVSPDA-CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M P + + N+L+HG R+E+ DEM +P TF +L+ GL
Sbjct: 267 RIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGL 326
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C V AL++ D+M PD + SLI GLC +GE+ A+ +M+
Sbjct: 327 CRIGHVKHALEIL-DVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMI 378
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 53/278 (19%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
L L + +LA++LF E K + Y+++I L +E +L
Sbjct: 431 LCLTNNHRLAMELF----------EEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLK 480
Query: 76 QLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+++ +R V + + +I + + + +E A ++FDEM + R V ++NTL++ +
Sbjct: 481 EMESSGCSRNV---VTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLC 537
Query: 134 TCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+++ L Q++ + + PD +YN L+ + ++ A + M +P V
Sbjct: 538 KNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSV 597
Query: 193 TFGTLIYGLC-----------------------------------LELRVDEALKLKEDM 217
T+GTLI GL E R EA++L +M
Sbjct: 598 TYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREM 657
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGE-LSLALGFKEEMV 254
M + PDA + + +GLC+ G + A+ F EM
Sbjct: 658 MEKGD-PPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMT 694
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 99/201 (49%), Gaps = 8/201 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ N++ Y+ +I L + + +E Q++ Q+ + + P++ + ++++++ RA +
Sbjct: 519 LQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEG-LKPDKFTYNSLLTYFCRAGDI 577
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYN 160
+ A + M+S + ++ TL+ + G+++ R+ Q+ ++P +YN
Sbjct: 578 KKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQ--TYN 635
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMR 219
++ +R +A ++F EM+++ P VT+ + GLC + EA+ +M
Sbjct: 636 PVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTD 695
Query: 220 VYNVKPDAQVFASLIKGLCAV 240
PD F L +GLCA+
Sbjct: 696 -KGFLPDFSSFLMLAEGLCAL 715
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 128/258 (49%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K ++A L++ ++D + A+ +F ++ A+ FR++ + L+I++L
Sbjct: 10 SKQIGSAQVAQLIKAERDIQKAIVIF-------DSATAEYTNGFRHSHQTFSLMISRLVS 62
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F +++L ++K + + E+I F ++ YGR A++VF +M + + + K
Sbjct: 63 ANHFRLAEELLCRMKEEKCNITEDI-FLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQK 121
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
S+ T+ ++ ++ ++ M E + P S N+L+ C S ++ A ++F E
Sbjct: 122 SYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFRE 181
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M R P T+GTLI GLC ++ EA +L ++ M P + SLI GLC
Sbjct: 182 MPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKE-METKACSPTVVTYXSLIHGLCQSK 240
Query: 242 ELSLALGFKEEMVRNKIE 259
+L A+ EEM I+
Sbjct: 241 DLDSAIRLLEEMASKGIK 258
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I R + A ++F EM + TV ++ +L++ + +D L
Sbjct: 189 PHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRL 248
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M K + P+ +Y+ LM G S A ++ D M+ RR P ++T+ TL++GLC
Sbjct: 249 LEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCK 308
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
E ++ EA+++ D M++ ++PDA ++ +I G C + + A F +EMV I
Sbjct: 309 EGKLQEAVEIL-DRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGI 362
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ AL++F EM + ++ TL+ + GKI +LF+ ME K SP +Y
Sbjct: 172 MDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXS 231
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+HG S+ L+ A ++ +EM + ++P + T+ +L+ G C AL+L DMM
Sbjct: 232 LIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELL-DMMVSR 290
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+ +++L+ GLC G+L A+ + M + DA
Sbjct: 291 RHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDA 331
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 104/250 (41%), Gaps = 45/250 (18%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P Y Y +I L R E +++ +++ P + + ++I +++ L+
Sbjct: 189 PHSYT---YGTLIXGLCRLGKIGEAKELFKEMETKA-CSPTVVTYXSLIHGLCQSKDLDS 244
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A+++ +EM+S ++ V ++++L++ G R +L +M + P+ +Y+ L+H
Sbjct: 245 AIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVH 304
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM------- 217
G +L++A ++ D M + L+P +G +I G C + EA ++M
Sbjct: 305 GLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISP 364
Query: 218 ---------------------------------MRVYNVKPDAQVFASLIKGLCAVGELS 244
MR + DA+ F SL+ C G+L
Sbjct: 365 NRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLH 424
Query: 245 LALGFKEEMV 254
A +EMV
Sbjct: 425 KAAHLVDEMV 434
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYN 160
HAL F M ++ SFN LL+ + KI + +F + + +S D C+ N
Sbjct: 52 HALHFFHLMMRSTPTPSLSSFNHLLSGL---AKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++ RL + + F +L+R P +VT+ TLI GLC+E R+ EA +L M ++
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PD + +LIKGLC G +++AL +EM+ +
Sbjct: 169 -GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLND 203
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKH---------DTRVVPEEIIFCNVISFYGRA 100
N++ Y++I+ L + DE +Q+ ++K D + P+ + F +I +
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSY 159
+ A ++ M + + ++N+L+ G ++ +LF M K PD SY
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N+L++G + ++E+A K+++EML +P ++T+ +L+ G+ L +VD+A KL +M+
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLF-SVMK 392
Query: 220 VYNVKPDAQVFASLIKGLC 238
+ + ++ + + GLC
Sbjct: 393 AHGIAENSYTYGIFLDGLC 411
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 103 LEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTC-GKIDRMTDLFQ----IMEKYVSPD 155
++H QVF S +N R + S LN +L C ++R+ + F I+ + SP+
Sbjct: 82 IKHYSQVF---SLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPN 138
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G + R+ +A ++F M K P +VT+GTLI GLC ++ ALKL +
Sbjct: 139 IVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQ 198
Query: 216 DMMR-----VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+M+ N KP+ + ++ GLC VG A EEM
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 18/161 (11%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------PD 155
+ A ++F M V ++ TL+ + G I+ L Q M +S P+
Sbjct: 155 ISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPN 214
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEM----------LKRRLQPTLVTFGTLIYGLCLEL 205
+YNI++ G R ++A ++F+EM L + LQP +VTF LI LC E
Sbjct: 215 VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEG 274
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+V EA KL M+ + PD + SLI+G C VG+L+ A
Sbjct: 275 KVIEAKKLLGVMIE-SGIVPDLVTYNSLIEGFCMVGDLNSA 314
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I+ Y + +E A+++++EM + V ++++LL + GK+D L
Sbjct: 328 PDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 387
Query: 145 FQIMEKY-VSPDACSYNILMHG------------------------------CVV----- 168
F +M+ + ++ ++ +Y I + G C++
Sbjct: 388 FSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCK 447
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +LE AW++F+++ +P +VT+ +I+G C E +VD+A L + M PD
Sbjct: 448 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQK-MEANGCTPDII 506
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +L++G +L + M + + DA
Sbjct: 507 TYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDA 540
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y + + L + E ++ +LK + E + C +I +A LE A ++
Sbjct: 399 NSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC-LIDGLCKAGKLETAWEL 457
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+++S+ + V ++ +++ G++D+ L Q ME +PD +YN LM G
Sbjct: 458 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 517
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
S +LE+ ++ M ++ + P +T ++ L + + E L L
Sbjct: 518 SNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 562
>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 125/262 (47%), Gaps = 27/262 (10%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
A PT R+ L+ QK ALQ F+ + PN T +Q Y +I KL
Sbjct: 11 AVPTHE-RIVHLILDQKSAPQALQTFEWASKLPNFTHSQST---------YRALIHKLLT 60
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
+ F VQ +L ++ + P+E IF +I GRAR++ ++V D ++ + ++K
Sbjct: 61 FRRFHTVQHLLDEMPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLK 120
Query: 124 SFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
FN++L+ ++ ID + ++M + D +Y ILM G ++ R+ + +K+
Sbjct: 121 IFNSILDVLVK-EDIDLARKFYRKKMMGAGIQGDDYTYGILMKGLCLTNRIGEGFKLLQV 179
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC--- 238
+ R L+P +V + TL++ LC +V A L ++ +P+ F LI G C
Sbjct: 180 IKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNEIK-----EPNDVTFNVLICGYCKED 234
Query: 239 ------AVGELSLALGFKEEMV 254
+ E S +LGF ++V
Sbjct: 235 NFVQALVLLEKSFSLGFVPDVV 256
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + V+ + A+++ + + S V + NTL+ GK+
Sbjct: 252 VPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHG 311
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + ME K P+A +YN L+ G S LE A +F++M + VTF TLI GL
Sbjct: 312 LLKEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLF 371
Query: 203 LELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGFKEEM 253
R ++ K+ E M V + + S++ GL L+ AL F +M
Sbjct: 372 SRGRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKM 423
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 87/215 (40%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N + +D +I L ++ +IL ++ V I N + YG R +L AL
Sbjct: 359 NFVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCGGSISPYNSV-LYGLYRKNMLNEAL 417
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGC 166
+ +M + + +S L G I ++ M P A Y+ L+HG
Sbjct: 418 EFLMKMENLFPRAVDRSLRIL--GFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGF 475
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +A ++ +EM+ P TF LI G C + ALKL EDM+ V PD
Sbjct: 476 CQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCV-PD 534
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI LC A +MV N I D
Sbjct: 535 TGSYSPLIDALCRKKSFQKAASLLLQMVENGITPD 569
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVI--SFY--GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ SF G RL A VFD ++ + ++ +V SFNTL+N + G ++
Sbjct: 137 PASLYFFNILMHSFCKEGEIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNE 193
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L + M+ V PD +Y++L++G +++D ++FDEML L P VTF TLI
Sbjct: 194 XFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLID 253
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +LI GLC G+L A +EM ++
Sbjct: 254 GHCKNGRVDLAMEIYKQMLS-QSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 312
Query: 260 MD 261
D
Sbjct: 313 PD 314
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I + +
Sbjct: 202 QASGVQPDVYT---YSVLINGLCKESKMDDXNELFDEML-DXGLVPNGVTFTTLIDGHCK 257
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 258 NGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 317
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+ +M+
Sbjct: 318 YTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 377
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KP+ + +I C G++ +EM R+
Sbjct: 378 SV-GLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRD 414
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 120/245 (48%), Gaps = 15/245 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+LR P A + F + N F ++ Y +++ LGR + + L
Sbjct: 33 VLRFIASPPKAFEFFNWASRNG----------FAHDSRSYFMMLDILGRNGNLNIARNFL 82
Query: 75 HQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+ + V E FCN ++ YG A L A+++F M S V +V +FN+LL +
Sbjct: 83 FSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLIL 142
Query: 133 LTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
L G+ + +F M V+PD ++NIL+ G + +++ ++ F EM + +P
Sbjct: 143 LKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPD 202
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+VT+ TL+ GLC +V A + + M+ ++ ++ PD + +L++G C E+ AL
Sbjct: 203 VVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVV 262
Query: 250 KEEMV 254
EEMV
Sbjct: 263 FEEMV 267
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 104/210 (49%), Gaps = 6/210 (2%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI+ K GR M + ++ V P+ F +I + + +++ + F EMS
Sbjct: 140 LILLKRGRTNM---AHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR 196
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRL 172
FN + V ++NTL++ + GK+ ++ + M K +SPD +Y L+ G + + +
Sbjct: 197 FNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEI 256
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A VF+EM+ R L+P +T+ TLI GLC + D+ ++ + PD + +
Sbjct: 257 DEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNT 316
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+ C G AL ++M K++ D+
Sbjct: 317 LMNAQCDAGNFDEALKMFKKMKELKVQPDS 346
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ L RA ++ + K + P+ + + ++ Y + ++ AL
Sbjct: 202 DVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALV 261
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGC 166
VF+EM S ++ ++NTL+ + K D++ ++ + + PD C+YN LM+
Sbjct: 262 VFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQ 321
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-----KED-MMRV 220
+ ++A K+F +M + ++QP T+ LI LC + A +L ED ++R
Sbjct: 322 CDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRD 381
Query: 221 YNVKPDAQVFASLIKGLCAVGE 242
P + + LC G+
Sbjct: 382 DGCTPLVAAYNPIFDFLCKNGK 403
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N + Y+ +I L + FD++++IL VP+ + +++ A
Sbjct: 268 SRGLKP---NDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDA 324
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--------IMEKYV 152
+ AL++F +M VQ +++ L+ + G +R LF + +
Sbjct: 325 GNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGC 384
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P +YN + + + A +VF +++K+ Q ++ TLI G C E + K
Sbjct: 385 TPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDP-PSYKTLIIGHCKEGTFEAGYK 443
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R V PD + + LI G GE LA E M+++
Sbjct: 444 LLLFMLRRDYV-PDFETYVLLINGFLQKGEPILAYKTLERMLKS 486
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%)
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+A K+F M + P+++TF +L+ L R + A + ++M Y V PD F
Sbjct: 113 FNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFN 172
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI+G C + F +EM R E D
Sbjct: 173 ILIRGFCKNSMVDEGFRFFKEMSRFNCEPD 202
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++G
Sbjct: 153 VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLC 212
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ + PD
Sbjct: 213 KESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QXLLPDJ 271
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ GLC G+L+ A G +EM ++ D
Sbjct: 272 ITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPD 305
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ Y R L+ ++ M + VQ V +++ L+N + +D +L
Sbjct: 164 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANEL 223
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K + P+ ++ L+ G + R++ A +++ +ML + L P J+T+ TL+YGLC
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCK 283
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +++A L D M +KPD + +LI G C G+L A ++ M++ I +D
Sbjct: 284 KGDLNQAHGLI-DEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 340
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 195 SGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDL 254
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L A + DEM + L+P T+ TLI
Sbjct: 255 AMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLID 314
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 315 GCCKEGDLDAAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 355
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 194 ASGVQPDVYT---YSVLINGLCKESXMDDANELFDEMLVKG-LVPNXVTFTTLIDGHCKN 249
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
++ A++++ +M S + + ++NTL+ + G +++ L ++ K + PD +Y
Sbjct: 250 GRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTY 309
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 310 TTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLS 369
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 370 V-GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRN 405
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G +DE +LK M
Sbjct: 134 FNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS-AM 192
Query: 219 RVYNVKPDAQVFASLIKGLC 238
R V+PD ++ LI GLC
Sbjct: 193 RASGVQPDVYTYSVLINGLC 212
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 4/200 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
I+ LGR + + IL +R E F ++I YGRA +++ ++++F +M
Sbjct: 125 IVQILGRYSKLNHARCILFNDTRGGVSRAAVTEDAFVSLIDSYGRAGIVQESVKLFKKMK 184
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
+ RTVKS++ L +L G+ + M + V P ++NIL+ G +S RL+
Sbjct: 185 ELGLDRTVKSYDALFKVILRRGRYMMAKRYYNAMLLEGVDPTRHTFNILLWGMFLSLRLD 244
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + +++M R + P +VT+ TLI G +VDEA KL + M+ ++ P+ F ++
Sbjct: 245 TAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVE-MKGRDIVPNVISFTTM 303
Query: 234 IKGLCAVGELSLALGFKEEM 253
+KG A G + AL EEM
Sbjct: 304 LKGYVAAGRIDDALKVFEEM 323
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A++ +++M S + V ++NTL+N K+D LF M+ + + P+ S+
Sbjct: 243 LDTAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVDEAEKLFVEMKGRDIVPNVISFTT 302
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G V + R++DA KVF+EM ++P +VTF TL+ GLC ++ EA + +M+ Y
Sbjct: 303 MLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEKMAEARDVLGEMVERY 362
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F ++ C G+L A + MVR I +A
Sbjct: 363 IAPKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEA 403
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 109/203 (53%), Gaps = 2/203 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +L ++L+I +AK D ++L ++ + VP F +I+ +A +
Sbjct: 226 KGFTPTVLMFNLVINGFCKAKDLDSAYKLL-EVMIEKGCVPNVFTFTILITGLCKANRVG 284
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A Q+ ++M V +++T++N + G++D +LFQ+ME+ P+ ++NIL+
Sbjct: 285 EAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILI 344
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++R+E+A +++ M + P ++T+ +LI GLC +VDEA +L + +
Sbjct: 345 DGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVS 404
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
+A +++L G A+G ++ A
Sbjct: 405 AANAVTYSTLFHGYAALGRMADA 427
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L +A FDE Q +L ++ P+ + F +I + E A +V
Sbjct: 125 DVMTYTALVHALCKAGKFDEAQGMLREMVAQG-CAPDTVTFSTLIDGLCKFGSEEQAFRV 183
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM----TDLFQIMEKYVSPDACSYNILMHG 165
+++ + + +F T++ + C K + + L ++ K +P +N++++G
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRL--CNKYNSVELASKVLGVVIAKGFTPTVLMFNLVING 241
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ L+ A+K+ + M+++ P + TF LI GLC RV EA +L E M+ + P
Sbjct: 242 FCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV-MGGCSP 300
Query: 226 DAQVFASLIKGLCAVGEL 243
+ ++++I GLC G++
Sbjct: 301 NVVTYSTVINGLCKQGQV 318
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + +I + A L+ A+Q+ +EM S + TL+ + G++ +
Sbjct: 54 MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALE 113
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K +PD +Y L+H + + ++A + EM+ + P VTF TLI GLC
Sbjct: 114 HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
++A ++ ED+++ DA F ++I+ LC
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDA-AFETIIQRLC 207
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEM-----SSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ +I+ V+ RA + AL V +++ FN + + + L+ ++ GK D
Sbjct: 512 DALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSS--AVDALVESLCQVGKTDD 569
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M E+ + SYN L+ G +R ++A +VF+ M+ P + T +I
Sbjct: 570 AKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVIS 629
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LC +VD+A +L + M ++ PD + +LI G C G LA EEM +E
Sbjct: 630 WLCSAAKVDDAYELVQRMSKL-GCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLE 688
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N++ Y +I L + D+ ++ ++ R P ++ N+ I +A+ +E A Q
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMER--RNCPPNVVTHNILIDGLCKAKRIEEARQ 358
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSP-DACSYNILMHGC 166
++ M + ++N+L++ + ++D LFQ I E VS +A +Y+ L HG
Sbjct: 359 LYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGY 418
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
R+ DA ++F ++ + P L T+ +LI C
Sbjct: 419 AALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 454
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 102/232 (43%), Gaps = 40/232 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I L +AK +E +Q+ H+++ +T P+ I + ++I ++ ++ A Q+
Sbjct: 336 NVVTHNILIDGLCKAKRIEEARQLYHRMR-ETGCAPDIITYNSLIDGLCKSFQVDEAFQL 394
Query: 110 FDEMSSFNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSY-NILMHGC 166
F + V +++TL + G++ +F ++ +K SPD +Y ++++ C
Sbjct: 395 FQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 454
Query: 167 VVSR----------------------------------RLEDAWKVFDEMLKRRLQPTLV 192
SR E A ++FD M R +
Sbjct: 455 KTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDAL 514
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMM--RVYNVKPDAQVFASLIKGLCAVGE 242
+ ++ G+ + D+AL + E ++ R P + +L++ LC VG+
Sbjct: 515 IYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGK 566
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
E L FD S V V S N L+ + + LF+ M + P+ +Y IL
Sbjct: 5 ELVLLFFDWARS-RVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGIL 63
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + L+ A ++ +EM + V TL+ GLC RV EAL+ M + +
Sbjct: 64 IRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK--D 121
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + +L+ LC G+ A G EMV
Sbjct: 122 CAPDVMTYTALVHALCKAGKFDEAQGMLREMV 153
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-----ARL--LEHAL 107
D ++ L + D+ +Q+LH++ E F +S Y R +RL + A
Sbjct: 555 DALVESLCQVGKTDDAKQLLHKMS--------ERGFAAAVSSYNRLLSGLSRLQRWDEAT 606
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
QVF+ M S + + N +++ + + K+D +L Q M K PD + N L+ G
Sbjct: 607 QVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGY 666
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVT 193
S R + A K+ +EM + L+P T
Sbjct: 667 CKSGRADLARKLLEEMTEAGLEPNDTT 693
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
C+ ++L C ++RR ++A +F + R P T+G LI G +D A++L E+
Sbjct: 27 CALDML---CRLNRR-QEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEE 82
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M + + +A V +L+KGLC G + AL M ++
Sbjct: 83 M-KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD 121
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFDE++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M + PD +Y++L++G ++ DA ++FDEM+ L P VTF TLI
Sbjct: 190 GFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C +D A++ ++M+R PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKTGSIDLAMEAYKEMLR-QGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + + P+ + +I+ + + A ++FDEM + +F TL++ G I
Sbjct: 198 HGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSI 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + + +++ + SPD +YN L++G L+ A + DEM + L+P +T+ TL
Sbjct: 258 DLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
I G C E ++ A K K+ M++ N++ D + +LI GLC G+
Sbjct: 318 IDGSCKEGDLETAFKYKKRMIKE-NIRLDDVAYTALISGLCREGQ 361
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + ++ ++ ++ + +VP + F +I + + ++ A++ + EM
Sbjct: 209 YSVLINGLCKESKMNDANELFDEMIGNG-LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEM 267
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++NTL+ + G + + DL M K + PD +Y L+ G L
Sbjct: 268 LRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL 327
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+K M+K ++ V + LI GLC E + A K+ +M+ V +KPD +
Sbjct: 328 ETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSV-GLKPDNGTYTM 386
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+I C G++ + +EM R+
Sbjct: 387 IINEFCKKGDVKMGSKLLKEMQRD 410
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 100/176 (56%), Gaps = 4/176 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + ++I +++ ++F++ ++ + +N L+N+ T G +DR ++
Sbjct: 325 VTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMGE 384
Query: 148 MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
MEK ++PD +YN LM G + RL++A + +EM KR +QP LV++ TLI G ++
Sbjct: 385 MEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKGD 444
Query: 207 VDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +A+K++++MM + +N P + ++IKGLC G+ A +EMV N I D
Sbjct: 445 IKDAVKVRDEMMGKGFN--PTLLTYNAMIKGLCLNGQGGDAEDLVKEMVGNGITPD 498
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 113/223 (50%), Gaps = 5/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + P +Y Y +I+ + ++ ++ ++ + +V P +++ +I Y
Sbjct: 175 ERGGIAPDKYT---YATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCD 231
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
LE AL+ EM V TV ++N ++ + G+ L + M EK ++PDA +
Sbjct: 232 QGNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFT 291
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G + + A K+F+ M+ + ++ T+VT+ +LI+ L ++ V E +L D +
Sbjct: 292 YNILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAV 351
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R ++PD ++ +LI C G++ A EM + +I D
Sbjct: 352 R-RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPD 393
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 14/237 (5%)
Query: 28 LFK---NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
LFK + +P + P +L H L + GR + +LK + +
Sbjct: 26 LFKSALSADPALSPLAVLPHLAATPSLPHLLLTASVAGRPHTTS--LSLYSRLKSLSLPI 83
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + S A +F ++ + + +FN +L + T GK R +L
Sbjct: 84 PTASLHPLLSSLPPAP-----AFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALEL 138
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCL 203
+ M SP+A +YN ++ G R++ ++ EM +R + P T+ T+I G C
Sbjct: 139 LRQMP---SPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCK 195
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
+V++A K+ ++M+ V+P+A ++ +LI G C G L +AL ++ EMV + M
Sbjct: 196 VGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSM 252
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 83/174 (47%), Gaps = 5/174 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R +L Y+ +I D +I+ +++ R+ P+++ + ++ L+
Sbjct: 353 RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKK-RITPDDVTYNTLMRGLCLLGRLD 411
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A + +EM+ +Q + S+NTL++ G I D + ++M K +P +YN ++
Sbjct: 412 EARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMI 471
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
G ++ + DA + EM+ + P T+ +LI GL E DE L +D+
Sbjct: 472 KGLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTE---DERLAAGDDV 522
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYN 160
HAL F M ++ SFN LL+ + KI + +F + + +S D C+ N
Sbjct: 52 HALHFFHLMMRSTPTPSLSSFNHLLSGL---AKIKHYSQVFSLYNQMRLSGLSSDRCTLN 108
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++ RL + + F +L+R P +VT+ TLI GLC+E R+ EA +L M ++
Sbjct: 109 ILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKL 168
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PD + +LIKGLC G +++AL +EM+ +
Sbjct: 169 -GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLND 203
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N++ Y+ +I L E ++ +++ P+ + + +I +
Sbjct: 133 RGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ-KLGCTPDVVTYGTLIKGLCGTGNIN 191
Query: 105 HALQVFDEM------SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDAC 157
AL++ EM N + V ++N +++ + G+ D LF+ M+ + + P
Sbjct: 192 IALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSII 251
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
SYN L+HG + + E++ ++ DEML + LQP +VTF LI LC E +V EA KL M
Sbjct: 252 SYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 311
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ + PD + SLI+G C VG+L+ A
Sbjct: 312 IES-GIVPDLVTYNSLIEGFCMVGDLNSA 339
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 38/225 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++I+ L + DE +Q+ ++K ++P I + ++I + A E + ++
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMK-TQGMIPSIISYNSLIHGFCCAGKWEESKRL 272
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
DEM +Q + +FN L++ + GK+ L +M
Sbjct: 273 LDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCM 332
Query: 149 --------EKYVS-------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
E +VS PD SYN+L++G + ++E+A K+++EML +P ++T
Sbjct: 333 VGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVIT 392
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ +L+ G+ L +VD+A KL +M+ + + ++ + + GLC
Sbjct: 393 YDSLLKGIFLAGKVDDAKKLF-SVMKAHGIAENSYTYGIFLDGLC 436
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 103 LEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTC-GKIDRMTDLFQ----IMEKYVSPD 155
++H QVF S +N R + S LN +L C ++R+ + F I+ + SP+
Sbjct: 82 IKHYSQVF---SLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPN 138
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G + R+ +A ++F M K P +VT+GTLI GLC ++ ALKL +
Sbjct: 139 IVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQ 198
Query: 216 DMMR-----VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+M+ N KP+ + ++ GLC VG A EEM
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM 241
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I+ Y + +E A+++++EM + V ++++LL + GK+D L
Sbjct: 353 PDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 412
Query: 145 FQIMEKY-VSPDACSYNILMHG------------------------------CVV----- 168
F +M+ + ++ ++ +Y I + G C++
Sbjct: 413 FSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCK 472
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +LE AW++F+++ +P +VT+ +I+G C E +VD+A L + M PD
Sbjct: 473 AGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQK-MEANGCTPDII 531
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +L++G +L + M + + DA
Sbjct: 532 TYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDA 565
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+ ++NTL+ + +I T LF M+K +PD +Y L+ G + + A K+
Sbjct: 139 IVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQ 198
Query: 181 EMLKR------RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
EML +P ++T+ ++ GLC R DEA +L E+M + + P + SLI
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEM-KTQGMIPSIISYNSLI 257
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
G C G+ + +EM+ ++ D
Sbjct: 258 HGFCCAGKWEESKRLLDEMLDQGLQPD 284
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y + + L + E ++ +LK + E + C +I +A LE A ++
Sbjct: 424 NSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNC-LIDGLCKAGKLETAWEL 482
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+++S+ + V ++ +++ G++D+ L Q ME +PD +YN LM G
Sbjct: 483 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 542
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
S +LE+ ++ M ++ + P +T ++ L + + E L L
Sbjct: 543 SNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 587
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P ++F ++ + +AR L A +F M F V + +N L++ G +
Sbjct: 334 LLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAM 393
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L ME +SPD +Y IL++G RL +A ++F M R+ P+ VT+ +LI+G
Sbjct: 394 GLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGF 453
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C E +++AL L +M V+P+ F++LI G C V + A+G EM I D
Sbjct: 454 CKEYNIEKALDLCSEMTSS-GVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPD 512
Query: 262 A 262
Sbjct: 513 V 513
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ L R + FD V + +QL +VP+ I+ + + ++ DEM+S
Sbjct: 204 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSL 262
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
V+ V + + + K++ +F++M+ + V P+ +Y+ ++ G + L A
Sbjct: 263 GVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQA 322
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ ++ E+L L P +V FGTL+ G C + A L M++ + V P+ V+ LI
Sbjct: 323 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVK-FGVDPNLYVYNCLIH 381
Query: 236 GLCAVGELSLALGFKEEM 253
G C G + A+G EM
Sbjct: 382 GQCKSGNMLEAMGLLSEM 399
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 12/230 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ L P ++ Y ++I L + E ++ ++K++ R+ P + + ++I + +
Sbjct: 400 ESLNLSP---DVFTYTILINGLCTEERLAEANRLFQRMKNE-RIFPSSVTYNSLIHGFCK 455
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACS 158
+E AL + EM+S V+ + +F+TL++ I L F++ K + PD +
Sbjct: 456 EYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVT 515
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ +++A +++ +ML+ + P TF L+ G E R+ +A+ +
Sbjct: 516 YTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDFYLENN 575
Query: 219 RVYNVKPDAQ-------VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ K Q F LI+GLC G + A F +M + D
Sbjct: 576 QAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPD 625
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 37/183 (20%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMH 164
A+ + EM S N+ V ++ L+N + T ++ LFQ M+ + + P + +YN L+H
Sbjct: 392 AMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIH 451
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL--------------------- 203
G +E A + EM ++P ++TF TLI G C
Sbjct: 452 GFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVP 511
Query: 204 --------------ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
E + EAL+L DM+ + P+ FA L+ G G LS A+ F
Sbjct: 512 DVVTYTTLIDAHFKEANMKEALRLYSDMLEA-GIHPNDHTFACLVDGFWKEGRLSDAIDF 570
Query: 250 KEE 252
E
Sbjct: 571 YLE 573
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 36/141 (25%)
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAW-------------------------------- 176
E SPD+ + +++G V RR + W
Sbjct: 191 EMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPS 250
Query: 177 ---KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
K+ DEM ++P + + I LC E +++EA K+ E +M+++ V P+ ++++
Sbjct: 251 KKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFE-LMKIHGVVPNLYTYSAM 309
Query: 234 IKGLCAVGELSLALGFKEEMV 254
I G C G L A G +E++
Sbjct: 310 IDGYCKTGNLRQAYGLYKEIL 330
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+D MT L V P+ Y I + ++E+A K+F+ M + P L T+ +
Sbjct: 256 LDEMTSLG------VKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAM 309
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C + +A L ++++ V + P+ VF +L+ G C EL A MV+
Sbjct: 310 IDGYCKTGNLRQAYGLYKEIL-VAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFG 368
Query: 258 IE 259
++
Sbjct: 369 VD 370
>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18900-like [Brachypodium distachyon]
Length = 857
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 12/248 (4%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
F+ +L+L D +AL F P F+++ Y +I LG+A+ F
Sbjct: 332 FQANQVLKLLHDHTMALGFFHWLKRQPG---------FKHDGHTYTTMIGILGQARQFGI 382
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++ +LH++ D R P + + +I YGRA L A++VF+EM + ++ TL+
Sbjct: 383 MRNLLHEMNRD-RCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLI 441
Query: 130 NAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G ++ DL+ M++ +SPD +Y+ +++ +L A+K+F EM++
Sbjct: 442 DIHAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCT 501
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P LVT+ +I D +KL D M+V +PD ++ +++ L G L A
Sbjct: 502 PNLVTYNIIIALQAKARNYDNVVKLYRD-MQVAGFRPDKITYSIVMEVLGHCGHLDEAEA 560
Query: 249 FKEEMVRN 256
EM R+
Sbjct: 561 VFIEMRRD 568
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/182 (17%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LG+ ++ ++ + P + + +I+ +AR ++ ++++ +M
Sbjct: 472 YSAMVNCLGKGGQLAAAYKLFCEMI-ENGCTPNLVTYNIIIALQAKARNYDNVVKLYRDM 530
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ +++ ++ + CG +D +F M + +PD Y +L+ + ++
Sbjct: 531 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 590
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + ML+ LQP + T +L+ R +A + ++M+ + P Q + L
Sbjct: 591 KALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNML-AQGLVPSLQTYTLL 649
Query: 234 IK 235
+
Sbjct: 650 LS 651
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ + + +I YGRAR E AL VF+EM V+ T K++N
Sbjct: 295 YKEVSKIYDQMQR-SGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + + PD SY ++ V + +E A K F +
Sbjct: 354 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GT+I G V++ +++ E MR+ +K + + +++ +
Sbjct: 414 GFEPNIVTYGTMIKGYAKANDVEKMMEVYEK-MRLSGIKANQTILTTIMDASGRCKDFGS 472
Query: 246 ALGFKEEM 253
ALG+ +EM
Sbjct: 473 ALGWYKEM 480
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 93/198 (46%), Gaps = 5/198 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ F E +++ L + + + P++ ++ +I Y +A + A +VF
Sbjct: 212 YQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFS 271
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
M V ++ ++N+L++ ++ ++ D Q+ + PD SY +L+ +RR
Sbjct: 272 SMVGKGVPQSTVTYNSLMSFETNYKEVSKIYD--QMQRSGIQPDVVSYALLIKAYGRARR 329
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT + L+ + V++A + + M R + PD +
Sbjct: 330 EEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-RIFPDLWSYT 388
Query: 232 SLIKGLCAVGELSLALGF 249
+++ ++ A F
Sbjct: 389 TMLSAYVNASDMEGAEKF 406
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + ++IT G+ F+ +++L L P I + ++ YGR +A
Sbjct: 135 WNFSEMDFLMLITAYGKLGNFNGAERVLSVLSK-MGSSPNVISYTALMESYGRGGKCNNA 193
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + + + PD Y+++
Sbjct: 194 EAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 253
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + + A KVF M+ + + + VT+ +L + E E K+ + M R
Sbjct: 254 IYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSL---MSFETNYKEVSKIYDQMQRS-G 309
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LIK AL EEM+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEML 341
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + +VP+E + +I Y R ++
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+++ DEM ++ + N+L+N G+I + M + + PD+ SYN L+
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 409
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +A+ + D+ML+ ++PT++T+ TL+ GLC D+AL++ MM+ V
Sbjct: 410 DGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKX-GV 468
Query: 224 KPDAQVFASLIKGL 237
PD +++L+ GL
Sbjct: 469 APDEVGYSTLLDGL 482
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 96/188 (51%), Gaps = 3/188 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L VP+ +C +I Y A ++ A ++
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM + + ++N L+N + +DR LF ++ +K + P+ +YN L+ G
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A+K+ D+M++ + P++VT+ LI GLC ++ ++KL M++ V
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKA-GVDSKLI 890
Query: 229 VFASLIKG 236
+ +L++G
Sbjct: 891 EYCTLVQG 898
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 123/297 (41%), Gaps = 63/297 (21%)
Query: 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
A L L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 73 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123
Query: 73 ILHQL------KHDTRVVPEEII------------FCNVISFYGRARLLEHALQVFDEMS 114
L+QL K V+ +E++ F ++ Y L ++AL VFD M
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183
Query: 115 SFNVQRTVKSFNTLLN-----------------------------------AMLTCGKID 139
+++S N+LLN A GK+D
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ ME V P+ +Y+ L++G V +E A V M ++ + +VT+ LI
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
G C + ++DEA K+ M + PD + + LI G C G++ A+ +EM+R
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P+ + ++ Y R A + D+M ++ TV ++NTLL + G D
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 454
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ +M K V+PD Y+ L+ G E A ++ ++L R + +TF T+I
Sbjct: 455 DALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
GLC ++ EA ++ D M+ PD + +LI G C + A K M R I
Sbjct: 515 SGLCKMGKMVEAEEIF-DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXI 573
Query: 259 E 259
Sbjct: 574 S 574
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N + + GK+D F ++ K PD +Y L+HG + +++A+++ DEML
Sbjct: 717 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R L P +VT+ LI GLC VD A +L + + + P+ + +LI G C +G +
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ-KGLFPNVVTYNTLIDGYCKIGNM 835
Query: 244 SLALGFKEEMVRNKIE 259
A K++M+ I
Sbjct: 836 DAAFKLKDKMIEEGIS 851
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
DE + +++ + V P + + ++I+ Y +E A V MS V R V ++
Sbjct: 243 DEAAGFVKKME-NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 301
Query: 128 LLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L+ K+D + + M E + PD +Y +L+ G + +++DA ++ DEML+
Sbjct: 302 LIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 361
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+ L +LI G C + EA + M+ +N+KPD+ + +L+ G C G S
Sbjct: 362 GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLKPDSYSYNTLLDGYCREGHTSE 420
Query: 246 ALGFKEEMVRNKIE 259
A ++M++ IE
Sbjct: 421 AFNLCDKMLQEGIE 434
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ + +++ + + ++ A +M + V+ + ++++L+N ++ G ++
Sbjct: 222 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 281
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYG 200
+ + M EK VS + +Y +L+ G ++++A KV M + L P +G LI G
Sbjct: 282 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C ++D+A++L ++M+R+ +K + + SLI G C GE+ A G MV ++
Sbjct: 342 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400
Query: 261 DA 262
D+
Sbjct: 401 DS 402
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+L Y+ ++ L R FD+ QI H L V P+E+ + ++ + E A ++
Sbjct: 437 VLTYNTLLKGLCRVGAFDDALQIWH-LMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLW 495
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKI-------DRMTDL------------------- 144
++ + ++ +FNT+++ + GK+ D+M DL
Sbjct: 496 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 555
Query: 145 ------FQI---MEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
F++ ME+ +SP YN L+ G SRRL + + EM R L P +VT+
Sbjct: 556 SNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTY 615
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
G LI G C E +D+A +M + + + ++++ GL +G + A ++MV
Sbjct: 616 GALIDGWCKEGMLDKAFSSYFEMTE-NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 98/206 (47%), Gaps = 5/206 (2%)
Query: 28 LFKNPNPNPNNTEAQPL--KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
LFK N +T + + + F + + ++ +I+ L + E ++I ++K D P
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSP 540
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ I + +I Y +A + A +V M + +++ +N+L++ + ++ TDL
Sbjct: 541 DGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLL 600
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + ++P+ +Y L+ G L+ A+ + EM + L ++ T++ GL
Sbjct: 601 TEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRL 660
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVF 230
R+DEA L + M+ + PD + F
Sbjct: 661 GRIDEANLLMQKMVD-HGFFPDHECF 685
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA K+FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPD 316
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 107/217 (49%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKENKMDDANKLFDEMLVKA-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + LQP +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI GLC G A EM+ ++
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
+ + ALQ+ K NT+ ++ Y++II L + K + Q+ ++
Sbjct: 179 ETRAALQMLKKIEGKLVNTD----------VVMYNIIINSLCKDKAVSDAYQLYSEMI-T 227
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
R+ P+ + F ++I + L+ A +F EM N+ V +F+ L++A+ G I R
Sbjct: 228 KRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITR 287
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++ +M K V PD +Y+ LM G + + A VF M + + P ++ +I
Sbjct: 288 AKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMIN 347
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL VDEAL L ++M + PD + SLI GLC +G +S A +EM N I
Sbjct: 348 GLGKIKMVDEALSLFKEMC-CKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIP 406
Query: 260 MD 261
D
Sbjct: 407 AD 408
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I F +I+ L+ AL D + + S+ TL+N + G+ +
Sbjct: 127 PTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQM 186
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +E K V+ D YNI+++ + + DA++++ EM+ +R+ P +VTF +LI G C+
Sbjct: 187 LKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCV 246
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
++ EA L +M+ + N+ PD F+ L+ LC G ++ A
Sbjct: 247 VGQLKEAFGLFHEMV-LKNINPDVYTFSILVDALCKDGNITRA 288
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P+ + + +++ Y + A VF MS V S+N ++N + +D
Sbjct: 300 VIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEAL 359
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK----------------- 184
LF+ M K ++PD +YN L+ G R+ AW++ DEM
Sbjct: 360 SLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVL 419
Query: 185 ------------------RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKP 225
+ +QP++ T+ LI GLC R+ A + +D++ + Y+V
Sbjct: 420 CKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSV-- 477
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+A + +I GLC G + A +M N I DA
Sbjct: 478 NAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDA 514
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDL---FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
++ FN +L +++ T + Q+ K ++P ++NIL++ + A+
Sbjct: 56 SIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFS 115
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+F ++LK PT +TF TLI G+CL ++ EAL + ++ + D + +LI GL
Sbjct: 116 IFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIAL-GFHLDQVSYRTLINGL 174
Query: 238 CAVGELSLAL 247
C +GE AL
Sbjct: 175 CKIGETRAAL 184
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I LG+ KM DE + ++ + P+ + + ++I + + +A Q+ DEM
Sbjct: 342 YNIMINGLGKIKMVDEALSLFKEMCCKG-IAPDTVTYNSLIDGLCKLGRISYAWQLVDEM 400
Query: 114 S---------SFN--------------------------VQRTVKSFNTLLNAMLTCGKI 138
++N +Q ++ ++N L++ + G++
Sbjct: 401 HNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRL 460
Query: 139 DRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D+FQ ++ K S +A +YNI+++G +A + +M + P VT+ T+
Sbjct: 461 KNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETI 520
Query: 198 IYGLCLELRVDEALKLKEDMM 218
I L + ++A KL +M+
Sbjct: 521 IRALFRKDENEKAEKLLREMI 541
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 9/216 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + KP L+ Y ++ L R K F + +L ++ D + P+ I+ +I+
Sbjct: 46 NNLTEEGHKP---TLITYTTLVAALTRQKRFKSIPALLSKVA-DNGMKPDSILLNAMINA 101
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSP 154
+ + ++ A+++F +M + + T ++NTL+ G+ L ++M ++ V P
Sbjct: 102 FSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKP 161
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +YNIL+ ++LE+AW V +M+ +QP +VT+ T+ + A +L
Sbjct: 162 NDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLI 221
Query: 215 EDMMRVYN-VKPDAQVFASLIKGLCAVGELSLALGF 249
M YN VKP+ + +I G C G + AL F
Sbjct: 222 LKM--PYNIVKPNERTCGIIISGYCKEGNMPEALRF 255
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 89/182 (48%), Gaps = 3/182 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+II+ + E + L+++K + V P ++F ++I Y + M
Sbjct: 238 IIISGYCKEGNMPEALRFLYRMK-ELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEE 296
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
F ++ V +F+T++NA + G ++ ++F M K + PD +Y+IL G V + +
Sbjct: 297 FGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRK 356
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A + M K +QP +V F T+I G C ++D A +L E M + P+ + + +LI
Sbjct: 357 AEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM-GTSPNLKTYETLI 415
Query: 235 KG 236
G
Sbjct: 416 WG 417
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P E +IS Y + + AL+ M V FN+L+ L + +
Sbjct: 229 VKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVD 288
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ +ME++ + PD +++ +M+ + +E+ ++F++M+K ++P + + L G
Sbjct: 289 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGY 348
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +A L M + Y V+P+ +F ++I G CA G++ A E+M
Sbjct: 349 VRAGQPRKAEALLTSMSK-YGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKM 399
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A VF+ ++ + T+ ++ TL+ A+ + + L ++ + + PD+ N ++
Sbjct: 40 EAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMI 99
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ S ++++A K+F +M + +PT T+ TLI G + R E++KL E M + NV
Sbjct: 100 NAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENV 159
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KP+ + + LI+ C +L A +MV + I+ D
Sbjct: 160 KPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD 197
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 9/197 (4%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
++G+ K V +IL Q + VP+ I + +IS Y ++ +++ALQV D M NV
Sbjct: 161 RIGKTKKATWVMEILEQ----SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVA 213
Query: 120 RTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
V ++NT+L + GK+ + M L + ++K PD +Y IL+ + A K+
Sbjct: 214 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 273
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM + +P +VT+ LI G+C E R+DEA+K +M Y +P+ +++ +C
Sbjct: 274 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS-YGCQPNVITHNIILRSMC 332
Query: 239 AVGELSLALGFKEEMVR 255
+ G A +M+R
Sbjct: 333 STGRWMDAEKLLSDMLR 349
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 109/209 (52%), Gaps = 3/209 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I L R + IL ++ P + + ++ + + + ++ A++
Sbjct: 355 SVVTFNILINFLCRQGLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEY 413
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + ++NTLL A+ GK+D ++ Q+ K SP +YN ++ G
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E A K+ DEM ++ L+P ++T+ +L+ GL E +VDEA+K D+ + ++P+A
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL-GIRPNAI 532
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ S++ GLC + A+ F M+ +
Sbjct: 533 TYNSIMLGLCKSRQTDRAIDFLAYMISKR 561
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 7/220 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARL 102
K + +++ Y+++I + + DE + L+ + + +I N+I S R
Sbjct: 280 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRW 337
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ A ++ +M +V +FN L+N + G + R D+ + M + +P++ SYN
Sbjct: 338 MD-AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 396
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+HG ++++ A + D M+ R P +VT+ TL+ LC + +VD A+++ + +
Sbjct: 397 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL-NQLSSK 455
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + ++I GL VG+ A+ +EM R ++ D
Sbjct: 456 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 495
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ I+ L + + ++L QL+ + P+ I + +I + + A++
Sbjct: 215 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE--CYPDVITYTILIEATCKESGVGQAMK 272
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+ DEM + + V ++N L+N + G++D M Y P+ ++NI++
Sbjct: 273 LLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMC 332
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R DA K+ +ML++ P++VTF LI LC + + A+ + E M ++ P++
Sbjct: 333 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK-MPMHGCTPNS 391
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ G C ++ A+ + + MV
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMV 418
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + E A+++
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKL 483
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM ++ + ++++L++ + GK+D F +E + P+A +YN +M G
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SR+ + A M+ +R +PT T+ LI G+ E EAL L
Sbjct: 544 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDL 588
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 141 MTDLFQIMEKYVS----PDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ D F+ +E V PD L+ G C + + + W V + + + P ++T+
Sbjct: 130 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVPDVITYN 188
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
LI G C +D AL++ + M NV PD + ++++ LC G+L A+
Sbjct: 189 VLISGYCKSGEIDNALQVLDRM----NVAPDVVTYNTILRTLCDSGKLKQAM 236
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 13/234 (5%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
+ K A+QL +N E + +KP +++ Y++II L + K+ E + ++ +
Sbjct: 189 ETKAAIQLMRN-------LEERSIKP---DVVMYNIIIDSLCKNKLVGEACNLYSEM-NA 237
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
++ P + + +I + L A+ + +EM N+ V +F+ L++A+ GK+
Sbjct: 238 KQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKA 297
Query: 141 MTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ +M K YV PD +YN L+ G + ++ A VF+ M + + P + ++ +I
Sbjct: 298 AKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMID 357
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC VDEA+ L E+ M+ NV P+ F SLI GLC G ++ ++M
Sbjct: 358 GLCKTKMVDEAISLFEE-MKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKM 410
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 103/205 (50%), Gaps = 5/205 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGR-AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
LK ++ + ++I LG+ KM + +I+ + V P+ + + +++ Y
Sbjct: 272 LKNINPDVYTFSILIDALGKEGKM--KAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNE 329
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++HA VF+ M+ V V+S+ +++ + +D LF+ M+ K V P+ ++N
Sbjct: 330 VKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS 389
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G S R+ W + D+M R ++T+ +LI LC +D+A+ L + M+
Sbjct: 390 LIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMI-TQ 448
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
++PD + LI GLC G L +A
Sbjct: 449 EIQPDMYTYTILIDGLCKGGRLKIA 473
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + KM DE + ++KH V+P I F ++I ++ + + + D+M
Sbjct: 352 YTIMIDGLCKTKMVDEAISLFEEMKHK-NVIPNTITFNSLIDGLCKSGRIAYVWDLVDKM 410
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ V ++++L++A+ +D+ LF+ ++ + + PD +Y IL+ G RL
Sbjct: 411 RDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRL 470
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A +VF +L + + T+ +I G C DEAL L M P+A F
Sbjct: 471 KIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSK-MEDNGCIPNAITFDI 529
Query: 233 LIKGLCAVGE 242
+I CA+ E
Sbjct: 530 II---CALFE 536
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 68/298 (22%)
Query: 14 SLLRLQKDPKLALQLFKN--------------------PNPNPNNTEAQPLKPFRYNLL- 52
S LRL+ P L++ LF++ + N +N + F LL
Sbjct: 4 STLRLRSAPSLSVSLFRHSLLCYSQSACTRASAMLHSQSHYNNHNDHNDAVALFNRMLLM 63
Query: 53 -------HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--------FCNV---- 93
++ I++ L + + F + L D + + +++ FC++
Sbjct: 64 RPPPPTFQFNNILSSLVKMQRFPTAISLSKHL--DFKGITSDLVTLNILINCFCHLGQIT 121
Query: 94 ISFYGRARLLEHA------------------------LQVFDEMSSFNVQRTVKSFNTLL 129
+SF A +L+ L+ D++ + Q S+ TL+
Sbjct: 122 LSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLI 181
Query: 130 NAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
N + G+ L + + E+ + PD YNI++ ++ + +A ++ EM +++
Sbjct: 182 NGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIY 241
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P +VT+ TLIYG C+ + EA+ L + M++ N+ PD F+ LI L G++ A
Sbjct: 242 PNVVTYTTLIYGFCIMGCLIEAVALLNE-MKLKNINPDVYTFSILIDALGKEGKMKAA 298
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
FN +L++++ + L + ++ K ++ D + NIL++ ++ ++ V +L
Sbjct: 72 FNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATIL 131
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
KR P ++T TLI GLCL V +ALK +D++ + + D + +LI GLC +GE
Sbjct: 132 KRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVAL-EFQLDRISYGTLINGLCKIGET 190
Query: 244 SLALGFKEEMVRNKIEMD 261
A+ + I+ D
Sbjct: 191 KAAIQLMRNLEERSIKPD 208
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I+ Y R L+ ++ M + VQ V +++ L+N + K+D +L
Sbjct: 167 PSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 226
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 227 FDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 286
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G++ A ++ M++ I +D
Sbjct: 287 KGELKQAHDLI-DEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLD 343
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
V + ++ + ++ +V SFNTL+N + G +D L M V PD +Y++L++G
Sbjct: 156 VLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLC 215
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+++DA ++FDEML + + P VTF TLI G C RVD A+++ + M+ ++ PD
Sbjct: 216 KESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLSPDL 274
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI GLC GEL A +EM ++ D
Sbjct: 275 ITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPD 308
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++FDEM + +F TL++ G++
Sbjct: 196 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRV 255
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + +SPD +YN L++G L+ A + DEM L+P +T+ TL
Sbjct: 256 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTL 315
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I G C E ++ A + ++ M++ N++ D V+ +LI GLC G
Sbjct: 316 IDGCCKEGDMETAFEHQKRMIQ-ENIRLDDVVYTALISGLCQEG 358
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I + +
Sbjct: 196 HASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DKGMVPNGVTFTTLIDGHCK 251
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G++ + DL M + + PD +
Sbjct: 252 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKIT 311
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC +E A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 312 YTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREML 371
Query: 219 RVYNVKPDA 227
V +KP+
Sbjct: 372 SV-GLKPNT 379
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
+A VFDE+S ++ +V SFNTL++ ++ L +ME + +SPD +Y+ L+
Sbjct: 244 NARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALI 303
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G R+E+A +FDEM + L P VTF TLI G C ++D AL+ E +M+ +
Sbjct: 304 NGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE-IMKDRGI 362
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD + +LI GLC G+L A EM+ N + D
Sbjct: 363 RPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 105/200 (52%), Gaps = 3/200 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R +++ ++ +I+ R+K +E +L + R+ P+ + +I+ + +E
Sbjct: 255 RGLRPSVVSFNTLISGYCRSKNVEE-GFVLKSVMESERISPDVFTYSALINGLCKESRVE 313
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +FDEM + +F TL++ GKID F+IM ++ + PD +YN L+
Sbjct: 314 EANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALI 373
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G L++A K+ +EM+ +P +TF TL+ G C + +D AL++K+ M+ +
Sbjct: 374 NGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEE-GI 432
Query: 224 KPDAQVFASLIKGLCAVGEL 243
+ D F +LI GLC G +
Sbjct: 433 ELDDVAFTALISGLCRDGRV 452
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 12/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLI-ITKLGRAKM-FDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
P + +N+L + I + A+M FDE+ + + P + F +IS Y
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISR--------RGLRPSVVSFNTLISGYC 272
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
R++ +E + M S + V +++ L+N + +++ LF ++ E + P+
Sbjct: 273 RSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGV 332
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++ L+ G +++ A + F+ M R ++P L+T+ LI GLC + + EA KL +M
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ KPD F +L+ G C G++ AL K+ MV IE+D
Sbjct: 393 IG-NGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELD 435
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 3/200 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
II+K+G + ++ + R ++F +I Y + +E A+Q +
Sbjct: 124 FIISKMGHHSSTSLISSLIQTVPTHHRHNHSVLVFDALIIAYTDSEFIEDAIQCLRLVKK 183
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLE 173
N V + LL ++ + F ++++ P+ +NILMHG +
Sbjct: 184 NNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVM 243
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A VFDE+ +R L+P++V+F TLI G C V+E LK +M + PD +++L
Sbjct: 244 NARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKS-VMESERISPDVFTYSAL 302
Query: 234 IKGLCAVGELSLALGFKEEM 253
I GLC + A G +EM
Sbjct: 303 INGLCKESRVEEANGLFDEM 322
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 3/206 (1%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
N E + R +L+ Y+ +I L R E +++L+++ + P++I F ++
Sbjct: 353 NFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNG-FKPDKITFTTLMDGC 411
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDA 156
+ ++ AL++ D M ++ +F L++ + G++ D L ++ PD
Sbjct: 412 CKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDD 471
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y +++ ++ K+ EM + P +VT+ L+ G C + ++ A L
Sbjct: 472 PTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHA 531
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242
M+ + V P+ F L+ G C G
Sbjct: 532 MLNM-EVVPNDITFNILLDGHCKHGS 556
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ CGK++
Sbjct: 111 VERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLCGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + +SPD +YN +++G +++E+A K F EM R ++PT+VT+ TLI G
Sbjct: 171 RFFEDMKXREISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
RVD+AL L E+ M+ + +KP+A +++L+ GLC ++S A G +EMV I
Sbjct: 231 VSVDRVDDALTLLEE-MKGFGIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYI 286
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLCGKVETANRFFEDMKXREISPDVITYNTMINGYYRVKKIEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V + AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALTLLEEM 246
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + + P + F LI G
Sbjct: 241 TLLEEMKGFGIKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAGDYEKAIKLLDKLIEKDI 357
>gi|15234493|ref|NP_195386.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181418|sp|Q9M065.1|PP352_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g36680, mitochondrial; Flags: Precursor
gi|2464912|emb|CAB16807.1| salt-inducible like protein [Arabidopsis thaliana]
gi|7270616|emb|CAB80334.1| salt-inducible like protein [Arabidopsis thaliana]
gi|17381286|gb|AAL36061.1| C7A10_680/C7A10_680 [Arabidopsis thaliana]
gi|24111267|gb|AAN46757.1| At4g36680/C7A10_680 [Arabidopsis thaliana]
gi|332661286|gb|AEE86686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 412
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 20/222 (9%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S LR + DP AL+++ N ++ A P+ RY +L + +L + + F +++ +
Sbjct: 38 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RY---AQELTVRRLAKCRRFSDIETL 89
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ K+D ++ EE + +I YG+A + HA++ F++M + R+ SFN LLNA L
Sbjct: 90 IESHKNDPKI-KEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148
Query: 134 TCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
D++ LF +I ++Y + PD SY IL+ S E A ++ +M + ++ T
Sbjct: 149 HSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVT 208
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
+ F T++ L + ++ A L +M++ YNV+
Sbjct: 209 TIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVR 250
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 64 AKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+K FD+V Q+ ++ + +++P++I + +I Y + E A+++ +M ++ T
Sbjct: 150 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 209
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------------------- 151
+F T+L+++ G+++ +L+ M K
Sbjct: 210 IAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESPERVKELIEEM 269
Query: 152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SYN LM L++A KV++ + P TF TLI+ LC
Sbjct: 270 SSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLY 329
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++ + + + ++ + PD L+ GL
Sbjct: 330 EQGYAIFKKSVYMHKI-PDFNTLKHLVVGL 358
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 202 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 260
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM +++ D
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPD 297
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 187 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 246
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLID 306
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 307 GCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEG 347
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 186 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 241
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 242 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITY 301
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 302 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLN 361
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD++ + +I C G++ +EM R+
Sbjct: 362 V-GLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRD 397
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEXIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + + +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S SL++ ++DP+ L +F +A K F +N Y +++ L
Sbjct: 50 KTKFISHESAVSLMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLV 100
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRT 121
R K F V ILHQ+K++T +E +F N++ + R+ L + +++F+ + V+ +
Sbjct: 101 RHKKFLAVDAILHQMKYET-CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 159
Query: 122 VKSFNTLLNAMLTCGKID--RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
+ + +T LN ++ G+++ R L+ + P+ C +NIL+ + + A+ V
Sbjct: 160 LNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVV 219
Query: 180 DEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+EM + + P +T+ TL+ L R EA++L EDM+ + PD F +I G C
Sbjct: 220 EEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFC 279
Query: 239 AVGELSLALGFKEEMVRN 256
GE+ A + M +N
Sbjct: 280 RAGEVERAKKILDFMKKN 297
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 6/196 (3%)
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM--SSFNVQRTVKSFNTL 128
+++L KH+ + P IF ++ + + + A V +EM S + ++ +++TL
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSI-TYSTL 238
Query: 129 LNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ + + +LF+ I ++ +SPD ++N++++G + +E A K+ D M K
Sbjct: 239 MDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNG 298
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P + + L+ G C ++ EA K D ++ +K D + +L+ C GE A
Sbjct: 299 CNPNVYNYSALMNGFCKVGKIQEA-KQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEA 357
Query: 247 LGFKEEMVRNKIEMDA 262
+ EM ++ D
Sbjct: 358 MKLLGEMKASRCRADT 373
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 2/210 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L E ++ + + P+ + F +I+ + RA +E A ++
Sbjct: 231 NSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKI 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M V +++ L+N GKI F ++ + + D Y LM+
Sbjct: 291 LDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCR 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++A K+ EM R + +T+ ++ GL E R +EAL++ D V +
Sbjct: 351 NGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQML-DQWGSEGVHLNKG 409
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ LC GEL A+ F M I
Sbjct: 410 SYRIILNALCCNGELEKAVKFLSVMSERGI 439
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI----SFYGRARLLEHALQV 109
Y ++ R DE ++L ++K +R + + + NVI S GR+ E ALQ+
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMK-ASRCRADTLTY-NVILRGLSSEGRS---EEALQM 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D+ S V S+ +LNA+ G++++ +M E+ + P ++N L+
Sbjct: 396 LDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCE 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
S E +V L+ L P ++G ++ +C E ++ +L + ++
Sbjct: 456 SGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLV 505
>gi|2632061|emb|CAA05629.1| membrane-associated salt-inducible protein like [Arabidopsis
thaliana]
Length = 428
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 20/222 (9%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S LR + DP AL+++ N ++ A P+ RY +L + +L + + F +++ +
Sbjct: 54 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDIETL 105
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ K+D ++ EE + +I YG+A + HA++ F++M + R+ SFN LLNA L
Sbjct: 106 IESHKNDPKI-KEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 164
Query: 134 TCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
D++ LF +I ++Y + PD SY IL+ S E A ++ +M + ++ T
Sbjct: 165 HSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVT 224
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
+ F T++ L + ++ A L +M++ YNV+
Sbjct: 225 TIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVR 266
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 64 AKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+K FD+V Q+ ++ + +++P++I + +I Y + E A+++ +M ++ T
Sbjct: 166 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 225
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------------------- 151
+F T+L+++ G+++ +L+ M K
Sbjct: 226 IAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESPERVKELIEEM 285
Query: 152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SYN LM L++A KV++ + P TF TLI+ LC
Sbjct: 286 SSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLY 345
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++ + + + ++ + PD L+ GL
Sbjct: 346 EQGYAIFKKSVYMHKI-PDFNTLKHLVVGL 374
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 114/214 (53%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I + + + +Q+L ++ + ++ P+ + + +I+ + + A ++
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALINAFVKEGKFFEAAEL 347
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+DEM + ++N++++ ++D D+F +M K SPD ++ L+ G
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 407
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R++D ++ EM +R L VT+ TLI+G CL ++ AL L + M+ V PD
Sbjct: 408 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 466
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ GLC G+L AL + M ++K+++DA
Sbjct: 467 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 500
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + +I AK D+ ++LH++ +V + + +I + L AL +
Sbjct: 394 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
+M S V + + NTLL+ + GK+ ++F+ M+K V PD
Sbjct: 453 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 512
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ M
Sbjct: 513 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 572
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P+ F +LI G C G + L EM R I DA
Sbjct: 573 GS-KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 616
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P + FC ++ R + + ++ +M ++ + SFN L+ +C K+
Sbjct: 73 SRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPF 132
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F +I + + PD ++ L+HG V R+ +A F +M + +P +VTF TL+
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E R+ EA+ L + MM ++P + +++ G+C G+ AL +M
Sbjct: 193 GLCREGRIVEAVALLDRMME-DGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 10/203 (4%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G K D V +L +++ + ++P +I+ +I + A +F EM +
Sbjct: 228 GMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIF 287
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N+++ + G+ L Q ++E+ +SPD +YN L++ V + +A ++
Sbjct: 288 PDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAEL 347
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKPDAQVFASLIK 235
+DEML R + P +T+ ++I G C + R+D A EDM M PD F +LI
Sbjct: 348 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA----EDMFYLMATKGCSPDVFTFTTLID 403
Query: 236 GLCAVGELSLALGFKEEMVRNKI 258
G C + + EM R +
Sbjct: 404 GYCGAKRIDDGMELLHEMPRRGL 426
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +F TLL+ + ++
Sbjct: 110 IRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEAL 169
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D F Q+ E P+ ++ LM+G R+ +A + D M++ LQPT +T+GT++ G+
Sbjct: 170 DFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGM 229
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + AL L M V ++ P+ +++++I LC G S A EM I
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 2/166 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVS 153
S + + LE A+ +F +M +V F L+ ++ + D + L+Q ME K +
Sbjct: 52 SGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIR 111
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
D S+NIL+ +L A F ++ K L P +VTF TL++GLC+E RV EAL
Sbjct: 112 CDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDF 171
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M +P+ F +L+ GLC G + A+ + M+ + ++
Sbjct: 172 FHQMFET-TCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQ 216
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++L Y+++I L F E +++ ++ H
Sbjct: 482 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH-R 540
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+F M S KSF
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS-------KSF---------------- 577
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++N L++G + R++D ++F EM +R + + + TLIYG
Sbjct: 578 -----------SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 626
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ G + EL A+ E++
Sbjct: 627 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E HQ+ +T P + F +++ R + A+ + D M +Q T ++ T+
Sbjct: 167 EALDFFHQM-FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTI 225
Query: 129 LNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ M G +L + ME+ ++ P+ Y+ ++ R DA +F EM ++
Sbjct: 226 VDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P L T+ ++I G C R +A +L ++M+ + PD + +LI G+ A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE-RKISPDVVTYNALINAFVKEGKFFEA 344
Query: 247 LGFKEEMVRNKI 258
+EM+ I
Sbjct: 345 AELYDEMLPRGI 356
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A VF+ ++ + ++ +V SFNTL+N + G +D L M V PD +Y++L++
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN 203
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 204 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLS-QSLS 262
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I + +
Sbjct: 187 HASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DKGLVPNGVTFTTLIDGHCK 242
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
+ ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 243 SGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 302
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC LE A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 303 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREML 362
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+KPD + +I C G++ +EM R+
Sbjct: 363 SA-GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 399
>gi|357115508|ref|XP_003559530.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Brachypodium distachyon]
Length = 768
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMH 164
VFDEMS + ++ +N ++A ++D+ LF M+ P D C+YN ++
Sbjct: 208 HVFDEMSRRGLPTNLRFYNICIHAFGKWRRLDKSLKLFATMKAATPPLVPDVCTYNSVIR 267
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
V+ R+ DA VFDEM + P + T+ ++ G C R+D+AL++ ++M +K
Sbjct: 268 VLVIGGRVADALVVFDEMKLAGIHPDVFTYRAVVDGCCKSFRMDDALRMFQEMRGSIGLK 327
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D V+ SL+ GL +L A GF E MV + I+ A
Sbjct: 328 GDVVVYNSLLDGLFKAKKLDEACGFIETMVADGIQCSA 365
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 7/218 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQ 108
NL Y++ I G+ + D+ ++ +K T +VP+ + +VI + AL
Sbjct: 221 NLRFYNICIHAFGKWRRLDKSLKLFATMKAATPPLVPDVCTYNSVIRVLVIGGRVADALV 280
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGC 166
VFDEM + V ++ +++ ++D +FQ M + D YN L+ G
Sbjct: 281 VFDEMKLAGIHPDVFTYRAVVDGCCKSFRMDDALRMFQEMRGSIGLKGDVVVYNSLLDGL 340
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+++L++A + M+ +Q + T T+I GL R + A +L ++ + + D
Sbjct: 341 FKAKKLDEACGFIETMVADGIQCSASTHNTVIDGLFKNGRAEAACRLFYELRKKGQLL-D 399
Query: 227 AQVFASLIKGLCAVG---ELSLALGFKEEMVRNKIEMD 261
++ +++ C G ++ A+G +EM +D
Sbjct: 400 GIAYSIMVREFCKEGTGDQVEEAVGLVKEMEERGFVID 437
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++T + +V +LH+ ++ P +I N +I G+ E A V DE
Sbjct: 610 YNSLMTSFVKKGYLKQVWAVLHE--RGGQLCPNDIATYNLIIQGLGQMGKTEVASSVMDE 667
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+S V + +NTL+N + GK++ L QI+ + + PD ++N L++ + R
Sbjct: 668 LSKKGVYMDIVMYNTLINQLGKVGKVEEANCLLEQIITRGMKPDVVTFNTLININAKAGR 727
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L++A K M+ + P T LI+
Sbjct: 728 LKEADKYLRRMIAEGIAPNHATETILIF 755
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 588 LSVACKLFEIFTNLGRKGTSYTYNSLMTSFVKKGYLKQVWAVLHERGGQLCPNDIATYNL 647
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + E A V DE+ K+ + +V + TLI L +V+EA L E ++
Sbjct: 648 IIQGLGQMGKTEVASSVMDELSKKGVYMDIVMYNTLINQLGKVGKVEEANCLLEQII-TR 706
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + M+ I
Sbjct: 707 GMKPDVVTFNTLININAKAGRLKEADKYLRRMIAEGI 743
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ FR +++ Y +I L + E + ++ +P + + ++IS + R ++
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ + + M+ V ++ TL+N ++D DL Q+ K ++PD ++ LM
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RL DA + EM ++ PT+ T+ T++ G C +++EA K M+ +
Sbjct: 299 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDC 355
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ F +I+GLC V S A+ EE R + D
Sbjct: 356 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 102/203 (50%), Gaps = 2/203 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ + D+ +L+Q+ + P+ + F +++ R L A+ +
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPDVVTFTSLMDGLCRENRLSDAVHI 313
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM + TV ++NT+L+ +++ F + E P+ S+NI++ G
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK-FMLEEMDCPPNVVSFNIMIRGLCKV 372
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R +A ++ +E +RR P +V + T+I GLC E +VDEA ++ M+ P++
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSIT 432
Query: 230 FASLIKGLCAVGELSLALGFKEE 252
+++LI GLC G L A G+ E+
Sbjct: 433 YSTLITGLCNAGMLDRARGYIEK 455
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++ Y +I L E ++ L ++ + + P + + +I + ++
Sbjct: 40 KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVD 98
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYN 160
A+ + +M V V ++N+L++ + K +R ++ + ++E+ V PD +Y
Sbjct: 99 EAVALLSKMRKKCVPTAV-TYNSLISGLC---KAERASEAYDLLEEMVYSGCIPDIFTYT 154
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G S++ +DA +VF++++ R +P +VT+ LI GLC E R+ EA+ L M++
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ P+ + SLI G C +G++ A+ E M
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +IT ++K D+ ++ QL P+ + + +I + L+ A+ +
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKEAIDL 207
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F M S + ++N+L++ GK+D +L + M E SPD +Y LM+G
Sbjct: 208 FGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFC 267
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ + +M R + P
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR-KSCSPTV 326
Query: 228 QVFASLIKGLCAVGELSLALGFK-EEM 253
+ +++ G C +L A F EEM
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEM 353
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++ K PD +Y ++H V RL +A K +EM R L P +VT+ LI GLC
Sbjct: 34 LGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCK 93
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
RVDEA+ L M + P A + SLI GLC S A EEMV
Sbjct: 94 GGRVDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + ++I + + LE AL +M S V ++ +++A+ ++ +
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 148 M-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M + ++P+ +Y +L+ G R+++A + +M +++ PT VT+ +LI GLC R
Sbjct: 72 MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAER 130
Query: 207 VDEALKLKEDMMRVYN-VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
EA L E+M VY+ PD + +LI G C + AL E++V
Sbjct: 131 ASEAYDLLEEM--VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
S D +Y L+ G +RLE A +M+ + P + T+ +I+ LC+E R+ EA K
Sbjct: 8 SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M N+ P+ + LI GLC G + A+ +M
Sbjct: 68 FLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I L + E +++ + + R P+ +++ VI R + ++ A +V
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARR-RRCNPDVVMYTTVIDGLCREKKVDEACRV 416
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ +M +++TL+ + G +DR +EK P+ +YN+L+
Sbjct: 417 YRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGY---IEKGCVPNIGTYNLLIDAFRK 473
Query: 169 SRRLEDAWKVFDEMLKR 185
+ R EDA ++ D+M++R
Sbjct: 474 ANRDEDARELLDDMVQR 490
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 120/233 (51%), Gaps = 13/233 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+PF+L LL L D + ++++FK A K + ++ Y L+I KLG A F
Sbjct: 70 TPFQLCKLLELPLDVETSMEIFK---------WAGAQKGYCHSFSVYYLLIDKLGAAAGF 120
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++L Q+K + +V E +F ++ +YGRA L A ++ +M + + + +S+N
Sbjct: 121 KVIDRLLLQMKEEG-IVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYN 179
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L+ ++ +++F ++ K VSP+ ++ ++M + +++A + +M K
Sbjct: 180 VVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKH 239
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
P + + TLI L RVDEALKL E+M + PD F ++I G C
Sbjct: 240 GCVPNSMIYQTLIDALSKRDRVDEALKLLEEMF-LMGCPPDVNTFNTVIYGFC 291
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N + Y+ +I+ L + E + ++ P+ F ++I R +E
Sbjct: 446 KGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKG-CKPDIFTFNSLIFGLCRVDEME 504
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILM 163
AL ++ +M V +FNTL++A L G+I L M P D +YN L+
Sbjct: 505 DALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLI 564
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ +E +F+EM+++ L P+++T LI G C +V AL+ DM+
Sbjct: 565 KALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIH-RGF 623
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + SLI GLC G + AL E++ I+ D+
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDS 662
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + ++ L + +F ++++ + P + +I + + LE A +
Sbjct: 381 DVFTFSTLVNGLCKKGLFGSALELVNDMDAKG-CKPNLNTYTILIDGFCKKGQLEEAGLI 439
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + +N L++A+ GKI D+F ++ K PD ++N L+ G
Sbjct: 440 LREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+EDA ++ +M+ + VTF TLI+ + EALKL DM+ D
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDML-FRGCPLDEI 558
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ LIK LC G + LG EEM+R +
Sbjct: 559 TYNGLIKALCKTGAVEKGLGLFEEMIRKGL 588
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+ + F +I + R ++ AL++ ++M ++N L+ A+ G +++
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577
Query: 143 DLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ ++ K ++P + NIL++G + ++ +A + +M+ R P +VT+ +LI GL
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
C R+ EAL L E ++ ++PD+ + +LI LC G
Sbjct: 638 CKRGRIQEALNLFEK-LQAEGIQPDSITYNTLICWLCREG 676
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++H++ ++ R +E ++ + VP+ F +++ + L AL++
Sbjct: 345 NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALEL 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++M + + + ++ L++ G+++ + +++ K S + YN L+
Sbjct: 405 VNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCK 464
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ +A +F EM + +P + TF +LI+GLC +++AL L DM+ + V ++
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMV-LEGVIANSV 523
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +LI GE+ AL +M+ +D
Sbjct: 524 TFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLD 556
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 19/197 (9%)
Query: 66 MFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
M +EV L+ T+ VP +I+ +I + ++ AL++ +EM V
Sbjct: 222 MVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVN 281
Query: 124 SFNTL------LNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176
+FNT+ LN +L K +DRM + K +P+ +Y LMHG + R+++A
Sbjct: 282 TFNTVIYGFCRLNRVLEGAKLVDRM------ILKGFTPNDMTYGYLMHGLCKTCRIDEA- 334
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+L + P +V F TL+ G R++EA D M PD F++L+ G
Sbjct: 335 ---QALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNG 391
Query: 237 LCAVGELSLALGFKEEM 253
LC G AL +M
Sbjct: 392 LCKKGLFGSALELVNDM 408
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 69 EVQQILHQLKHDT--RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
E+Q+ L +L +D R P +EI + +I + +E L +F+EM + ++ +
Sbjct: 537 EIQEAL-KLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITC 595
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N L+N T GK+ + + ++ + SPD +YN L++G R+++A +F+++
Sbjct: 596 NILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQA 655
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEA 210
+QP +T+ TLI LC E D+A
Sbjct: 656 EGIQPDSITYNTLICWLCREGAFDDA 681
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + F V+ +++A + +M+ + TL++A+ K DR+
Sbjct: 206 VSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDAL---SKRDRVD 262
Query: 143 DLFQIMEKY----VSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+ +++E+ PD ++N +++G C ++R LE A K+ D M+ + P +T+G L
Sbjct: 263 EALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGA-KLVDRMILKGFTPNDMTYGYL 321
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF-KEEMVRN 256
++GLC R+DEA L + P+ F +L+ G G L+ A F ++M+ N
Sbjct: 322 MHGLCKTCRIDEAQALLSKV-----PGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 87 EIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
II CN+ I+ + A + +AL+ +M + ++N+L+N + G+I +LF
Sbjct: 591 SIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLF 650
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ ++ + + PD+ +YN L+ +DA + ++ P VT+ L+Y
Sbjct: 651 EKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVY 705
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ FR +++ Y +I L + E + ++ +P + + ++IS + R ++
Sbjct: 179 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 238
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ + + M+ V ++ TL+N ++D DL Q+ K ++PD ++ LM
Sbjct: 239 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLM 298
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RL DA + EM ++ PT+ T+ T++ G C +++EA K M+ +
Sbjct: 299 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF---MLEEMDC 355
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ F +I+GLC V S A+ EE R + D
Sbjct: 356 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 102/203 (50%), Gaps = 2/203 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ + D+ +L+Q+ + P+ + F +++ R L A+ +
Sbjct: 255 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPDVVTFTSLMDGLCRENRLSDAVHI 313
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM + TV ++NT+L+ +++ F + E P+ S+NI++ G
Sbjct: 314 LGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK-FMLEEMDCPPNVVSFNIMIRGLCKV 372
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R +A ++ +E +RR P +V + T+I GLC E +VDEA ++ M+ P++
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSIT 432
Query: 230 FASLIKGLCAVGELSLALGFKEE 252
+++L+ GLC G L A G+ E+
Sbjct: 433 YSTLVTGLCNAGMLDRARGYIEK 455
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F ++ Y +I L E ++ L ++ + + P + + +I + ++
Sbjct: 40 KGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN-LTPNVVTYTVLIDGLCKGGRVD 98
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYN 160
A+ + +M V V ++N+L++ + K +R ++ + ++E+ V PD +Y
Sbjct: 99 EAVALLSKMRKKCVPTAV-TYNSLISGLC---KAERASEAYDLLEEMVYSGCIPDIFTYT 154
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G S++ +DA +VF++++ R +P +VT+ LI GLC E R+ EA+ L M++
Sbjct: 155 TLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ P+ + SLI G C +G++ A+ E M
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMA 248
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +IT ++K D+ ++ QL P+ + + +I + L+ A+ +
Sbjct: 149 DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKEAIDL 207
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F M S + ++N+L++ GK+D +L + M E SPD +Y LM+G
Sbjct: 208 FGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFC 267
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ + +M R + P
Sbjct: 268 KLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR-KSCSPTV 326
Query: 228 QVFASLIKGLCAVGELSLALGFK-EEM 253
+ +++ G C +L A F EEM
Sbjct: 327 YTYNTILDGYCRANQLEEARKFMLEEM 353
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++ K PD +Y ++H V RL +A K +EM R L P +VT+ LI GLC
Sbjct: 34 LGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCK 93
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
RVDEA+ L M + P A + SLI GLC S A EEMV
Sbjct: 94 GGRVDEAVALLSKMRK--KCVPTAVTYNSLISGLCKAERASEAYDLLEEMV 142
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + ++I + + LE AL +M S V ++ +++A+ ++ +
Sbjct: 12 VTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEE 71
Query: 148 M-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M + ++P+ +Y +L+ G R+++A + +M +++ PT VT+ +LI GLC R
Sbjct: 72 MANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAER 130
Query: 207 VDEALKLKEDMMRVYN-VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
EA L E+M VY+ PD + +LI G C + AL E++V
Sbjct: 131 ASEAYDLLEEM--VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
S D +Y L+ G +RLE A +M+ + P + T+ +I+ LC+E R+ EA K
Sbjct: 8 SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M N+ P+ + LI GLC G + A+ +M
Sbjct: 68 FLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKM 107
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I L + E +++ + + R P+ +++ VI R + ++ A +V
Sbjct: 358 NVVSFNIMIRGLCKVNRSSEAMELVEEARR-RRCNPDVVMYTTVIDGLCREKKVDEACRV 416
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ +M +++TL+ + G +DR +EK P+ +YN+L+
Sbjct: 417 YRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGY---IEKGCVPNIGTYNLLIDAFRK 473
Query: 169 SRRLEDAWKVFDEMLKR 185
+ R EDA ++ D+M++R
Sbjct: 474 ANRDEDARELLDDMVQR 490
>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Glycine max]
Length = 562
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 106/198 (53%), Gaps = 7/198 (3%)
Query: 67 FDEVQQILHQLKH-DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+ EV I Q++ D R P+ + + ++S YG+AR E AL VF+EM ++ T K++
Sbjct: 292 YKEVSNIYDQMQRADLR--PDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAY 349
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LL+A G +++ +F+ M ++Y PD CSY ++ + + +E A K F ++
Sbjct: 350 NILLDAFSISGMVEQAQTVFKSMRRDRYF-PDLCSYTTMLSAYINADDMEGAEKFFKRLI 408
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +P +VT+GTLI G ++ +K E+M+ + +K + + +++ G+
Sbjct: 409 QDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEML-MRGIKANQTILTTIMDAYGKSGDF 467
Query: 244 SLALGFKEEMVRNKIEMD 261
A+ + +EM N I D
Sbjct: 468 DSAVHWFKEMESNGIPPD 485
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ + F E +++ L +D + + P++ +F +I + +A E A + F
Sbjct: 209 YQIILKTFVQGNKFREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYEKARKTFA 268
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+M+ +Q+T ++N+L++ ++ + D Q+ + PD SY +L+ +RR
Sbjct: 269 QMAELGIQQTTVTYNSLMSFETNYKEVSNIYD--QMQRADLRPDVVSYALLVSAYGKARR 326
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT + L+ + V++A + + M R PD +
Sbjct: 327 EEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYF-PDLCSYT 385
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++ ++ A F + ++++ E
Sbjct: 386 TMLSAYINADDMEGAEKFFKRLIQDGFE 413
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 55 DLIITKLGRAKM---FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
DL++ L R K ++ V +IL L+ ++ F +I+ YG+ A +V
Sbjct: 101 DLVVGTLIRFKQLKKWNLVVEILEWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLG 160
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSR 170
M+ V S L+ A G+ + +F+ M+K+ P A +Y I++ V
Sbjct: 161 LMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGN 220
Query: 171 RLEDAWKVFDEMLKRR---LQPTLVTFGTLIY 199
+ +A ++FD +L L+P F +IY
Sbjct: 221 KFREAEELFDNLLNDENSPLKPDQKMFNMMIY 252
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 214
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 215 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 273
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 320 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 360
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 199 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 254
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTY 314
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 315 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 375 V-GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRN 410
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ + + +I YGRAR E AL VF+EM V+ T K++N
Sbjct: 295 YKEVSKIYDQMQR-SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + + PD SY ++ V + +E A K F +
Sbjct: 354 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GTLI G V++ +++ E MR+ +K + + +++
Sbjct: 414 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEK-MRLSGIKANQTILTTIMDASGRCKNFGS 472
Query: 246 ALGFKEEM 253
ALG+ +EM
Sbjct: 473 ALGWYKEM 480
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQV 109
+ Y +I+ F E +++ L + + + P++ ++ +I Y +A E A +V
Sbjct: 210 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 269
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F M V ++ ++N+L++ + ++ ++ D Q+ + PD SY +L+ +
Sbjct: 270 FSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD--QMQRSDIQPDVVSYALLIKAYGRA 327
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR E+A VF+EML ++PT + L+ + V++A + + M R + PD
Sbjct: 328 RREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-RIFPDLWS 386
Query: 230 FASLIKGLCAVGELSLALGF 249
+ +++ ++ A F
Sbjct: 387 YTTMLSAYVNASDMEGAEKF 406
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + ++IT G+ F+ +++L L P I + ++ YGR +A
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSK-MGSTPNVISYTALMESYGRGGKCNNA 193
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKY--VSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + EK + PD Y+++
Sbjct: 194 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 253
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A KVF M+ + + + VT+ +L + E E K+ + M R +
Sbjct: 254 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRS-D 309
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LIK AL EEM+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEML 341
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 7/186 (3%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ R P+ + + + + R + AL + +M + T ++N +L G++
Sbjct: 203 ERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQ 262
Query: 140 RMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
D F M+K S PD SY ++HG V+ +L+ A KVFDEM + P++ T
Sbjct: 263 HAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIAT 322
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI C + V++A+ + +DM+R + P+ + LI+GLC G++ A+ ++M
Sbjct: 323 YNALIQVTCKKGNVEDAVAVFDDMIRKGYI-PNVVTYTVLIRGLCHAGKIDRAMKLLDKM 381
Query: 254 VRNKIE 259
R E
Sbjct: 382 KREGCE 387
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLK----HDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
Y++I+ R+ Q+K +D P+ + + V+ G A L+ A +V
Sbjct: 248 YNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKV 307
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FDEMS ++ ++N L+ G ++ +F M K P+ +Y +L+ G
Sbjct: 308 FDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCH 367
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ A K+ D+M + +P + T+ LI L E +++AL L E M + P+
Sbjct: 368 AGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEECLPNQD 427
Query: 229 VFASLIKGL 237
+ +I +
Sbjct: 428 TYNIIISAM 436
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 5/157 (3%)
Query: 104 EHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
+HA++ F + S V + + FN+LL+A++ + L + +E+ PDA +YN L
Sbjct: 157 DHAVRFFLSLHRSHGVAQDLPLFNSLLDALVKSRHAGKAASLVRALERRFPPDAVTYNTL 216
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMM 218
G + A + +M++ + PT T+ ++ G ++ A L++K+
Sbjct: 217 ADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAWDFFLQMKKRGS 276
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
N KPD + +++ GL G+L A +EM R
Sbjct: 277 NDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSR 313
>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
Length = 667
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 87 EIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+I+ CN+ I + +A+ + AL++F EM +Q ++ TL+N + G ++F
Sbjct: 476 DIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYGTLINGLYGVGYYYLAEEIF 535
Query: 146 -QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q+++ V P+ YNI++H + + E A K+F +M+++ + P ++TF TLIY L
Sbjct: 536 EQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKC 595
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R EA+ L DM ++PD+ F LI GL G+ + A E M+ N I +D
Sbjct: 596 SRAIEAIDLFRDMT-ARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLENGIILD 651
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 11/213 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I L + FD V++ + + D + IS ++ +E ++ +M
Sbjct: 199 YNRFIGVLVKNCCFDLVEK-YYSVALDKGFCLTSFTYSRWISALCQSERIELVERLLADM 257
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHGCVV- 168
F + + N ++ + K +R+ D + +E + +PD +Y ++ GC+
Sbjct: 258 DKFGCFPDIWACNIYVDCLC---KHNRLHDALKTLENMWIRGTNPDVVTYTTVV-GCLCD 313
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ +A ++++EM++R L+P +V G LI+GLC +VDEA +L M+ + N++ +
Sbjct: 314 NKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSL-NLELNVC 372
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +LI G G ++ A M N E D
Sbjct: 373 IYNALISGFLRSGSINKAFKIISVMRTNGCEPD 405
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + V+ + A+++++EM ++ + + L+ + K+D +L
Sbjct: 299 PDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFEL 358
Query: 145 -FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++ + + C YN L+ G + S + A+K+ M +P +VT+ + C
Sbjct: 359 ALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEPDVVTYNIRLNHYCN 418
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ EA KL E+M V PD + ++KGLC +L A GF
Sbjct: 419 TGMIKEAEKLIEEMEMSGIVNPDRYSYNQMLKGLCKAHQLDRAFGF 464
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL+LFK K + + + Y +I L + ++I Q+ RVV
Sbjct: 496 ALKLFKE----------MGYKGIQADAVTYGTLINGLYGVGYYYLAEEIFEQMLK-ARVV 544
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ ++ +A E A ++F +M V + +FNTL+ + C + DL
Sbjct: 545 PNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDL 604
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
F+ M + + PD+ ++ L+ G + + A++V++ ML+
Sbjct: 605 FRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLE 645
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNXIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C VG+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKVGQYDKAVKLLDKLIEKDI 357
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISF----YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHNFCKEGEIRL---AQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L +M+ V PD ++++L++G +++DA ++FDEML L P VTF TLI
Sbjct: 190 GFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ M+ ++ PD + +LI GLC G+L +EM ++
Sbjct: 250 GHCKNGRVDLAMEIYRQMLS-QSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A ++FDEM + +F TL++ G++D +++ Q++ + + PD +YN
Sbjct: 222 MDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNT 281
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G L+ + DEM + L+P +T+ TLI G C E ++ A + ++ M++
Sbjct: 282 LIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKE- 340
Query: 222 NVKPDAQVFASLIKGLCAVG 241
N++ D + +LI GLC G
Sbjct: 341 NIRLDDXAYTALISGLCQEG 360
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A ++P Y + ++I L + D+ ++ ++ B +VP + F +I + +
Sbjct: 198 QASGVQPDVYT---HSVLINGLCKESKMDDANELFDEML-BNGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V +KP+ + +I C G++ +EM R
Sbjct: 374 SV-GLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQR 409
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 113/216 (52%), Gaps = 6/216 (2%)
Query: 50 NLLHYDLII---TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
N++ Y+ +I K+GR + IL ++ + P E+ + +I + + + A
Sbjct: 189 NVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKG-ICPNEVTYNILIDGFCKDENVSGA 247
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
++VF EM ++ V ++N L+N + + GK+D L Q++ + P+ ++N+L++G
Sbjct: 248 MRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLING 307
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ + +A +F++M K+ + P +T+ TLI C + R+++A L +MM + P
Sbjct: 308 FCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALY-NMMIDRGIFP 366
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + LI GLC G++ A EMV K+ D
Sbjct: 367 EVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSAD 402
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Query: 92 NVISFY----GRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-- 143
NVISF G ++ L A V ++M + V V ++NTL++ G+I +M
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213
Query: 144 --LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L +++ K + P+ +YNIL+ G + A +VF EM ++ L+P +VT+ LI GL
Sbjct: 214 AILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGL 273
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C + +VDEA+ L+ D M +++P+ LI G C ++ A+ +M + ++ +
Sbjct: 274 CSDGKVDEAVALR-DQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPN 332
Query: 262 A 262
A
Sbjct: 333 A 333
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I + K +E + + ++ V P + + +I Y + +E A +
Sbjct: 297 NVVTHNVLINGFCKNKTVNEAINLFNDMEKQG-VDPNAMTYTTLIDAYCKDGRMEDAFAL 355
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++ M + V ++N L+ + G + L +++ K +S D +YNIL+
Sbjct: 356 YNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCK 415
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A K+ DEM ++ L P+ VT+ TL+ G C E + AL ++ M R + +
Sbjct: 416 KGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMER-KGKQANVV 474
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
LIKG C G L A G EM+
Sbjct: 475 THNVLIKGFCLKGRLEDANGLLNEML 500
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S N L+ G V D V+ EM+KR+++ +++F ++ GLC +++ A + ED
Sbjct: 122 SCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIED- 180
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELS 244
M+V+ V P+ + +LI G C +G +
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIG 207
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 92/205 (44%), Gaps = 39/205 (19%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY 151
V++F ++L + F + + ++ S N LL+ ++ + M ++ +++++
Sbjct: 92 VLAFVRNLKIL-RGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRK 150
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ + S+NI+++G +L A V ++M + P ++T+ TLI G C R+ +
Sbjct: 151 IELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMY 210
Query: 212 K----LKE---------------------------DMMRVY------NVKPDAQVFASLI 234
K LKE MRV+ ++P+ + LI
Sbjct: 211 KADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILI 270
Query: 235 KGLCAVGELSLALGFKEEMVRNKIE 259
GLC+ G++ A+ +++MV + +E
Sbjct: 271 NGLCSDGKVDEAVALRDQMVSSDLE 295
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 42/195 (21%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGR-AKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
N+ E Q + P N + Y +I + +M D L+ + D + PE + +I+
Sbjct: 322 NDMEKQGVDP---NAMTYTTLIDAYCKDGRMEDAFA--LYNMMIDRGIFPEVSTYNCLIA 376
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP 154
R ++ A + +EM S + V ++N L++++ G+ + L ++ EK ++P
Sbjct: 377 GLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNP 436
Query: 155 DACSYNILMHG-C-----------------------VVSR-----------RLEDAWKVF 179
+YN LM G C VV+ RLEDA +
Sbjct: 437 SHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLL 496
Query: 180 DEMLKRRLQPTLVTF 194
+EML+R L P T+
Sbjct: 497 NEMLERGLVPNRTTY 511
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 9/197 (4%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
++G+ K V +IL Q + VP+ I + +IS Y ++ +++ALQV D M NV
Sbjct: 104 RIGKTKKATWVMEILEQ----SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVA 156
Query: 120 RTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
V ++NT+L + GK+ + M L + ++K PD +Y IL+ + A K+
Sbjct: 157 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM + +P +VT+ LI G+C E R+DEA+K +M Y +P+ +++ +C
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS-YGCQPNVITHNIILRSMC 275
Query: 239 AVGELSLALGFKEEMVR 255
+ G A +M+R
Sbjct: 276 STGRWMDAEKLLSDMLR 292
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 109/209 (52%), Gaps = 3/209 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I L R + IL ++ P + + ++ + + + ++ A++
Sbjct: 298 SVVTFNILINFLCRQGLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEY 356
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + ++NTLL A+ GK+D ++ Q+ K SP +YN ++ G
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E A K+ DEM ++ L+P ++T+ +L+ GL E +VDEA+K D+ + ++P+A
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL-GIRPNAI 475
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ S++ GLC + A+ F M+ +
Sbjct: 476 TYNSIMLGLCKSRQTDRAIDFLAYMISKR 504
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 7/220 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARL 102
K + +++ Y+++I + + DE + L+ + + +I N+I S R
Sbjct: 223 KGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRW 280
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ A ++ +M +V +FN L+N + G + R D+ + M + +P++ SYN
Sbjct: 281 MD-AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNP 339
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+HG ++++ A + D M+ R P +VT+ TL+ LC + +VD A+++ + +
Sbjct: 340 LLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL-NQLSSK 398
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + ++I GL VG+ A+ +EM R ++ D
Sbjct: 399 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 438
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ I+ L + + ++L QL+ + P+ I + +I + + A++
Sbjct: 158 DVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE--CYPDVITYTILIEATCKESGVGQAMK 215
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+ DEM + + V ++N L+N + G++D M Y P+ ++NI++
Sbjct: 216 LLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMC 275
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R DA K+ +ML++ P++VTF LI LC + + A+ + E M ++ P++
Sbjct: 276 STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK-MPMHGCTPNS 334
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ G C ++ A+ + + MV
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMV 361
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + E A+++
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKL 426
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM ++ + ++++L++ + GK+D F +E + P+A +YN +M G
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SR+ + A M+ +R +PT T+ LI G+ E EAL L
Sbjct: 487 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDL 531
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 141 MTDLFQIMEKYVS----PDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ D F+ +E V PD L+ G C + + + W V + + + P ++T+
Sbjct: 73 LEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATW-VMEILEQSGAVPDVITYN 131
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
LI G C +D AL++ + M NV PD + ++++ LC G+L A+
Sbjct: 132 VLISGYCKSGEIDNALQVLDRM----NVAPDVVTYNTILRTLCDSGKLKQAM 179
>gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g17525, mitochondrial; Flags: Precursor
gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 626
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
QK AL+ F+ + P F ++ Y + KL + FD V Q+L ++
Sbjct: 53 QKSASGALETFRWASTFPG---------FIHSRSTYRALFHKLCVFRRFDTVYQLLDEMP 103
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ P++ IF +I +GRARL++ + V D +S F ++ ++K FN++L+ ++ I
Sbjct: 104 DSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDI 162
Query: 139 DRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
D + F ++M + D +Y ILM G ++ R+ D +K+ M + P V + T
Sbjct: 163 DIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNT 222
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L++ LC +V A L +M +P+ F LI C
Sbjct: 223 LLHALCKNGKVGRARSLMSEMK-----EPNDVTFNILISAYC 259
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 11/219 (5%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLK-----HDTRVVPEEIIFCNVISFYGRARL 102
R+N ++ +I L D+ +IL ++ H R+ P C + FY R
Sbjct: 385 RWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARIDPYN---CVIYGFYKENRW 441
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
E AL+ +M + +SF L++ G D T Q++ + P + L
Sbjct: 442 -EDALEFLLKMEKLFPRAVDRSFK-LISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCL 499
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H ++E++ ++ ++M+ R P TF +I G C + +V +K EDM
Sbjct: 500 IHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIKFVEDMAERGC 559
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + + L++ LC G++ A MV I D
Sbjct: 560 V-PDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVPD 597
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + V +NTLL+A+ GK+ R L M++ P+ ++NIL+ ++L
Sbjct: 208 MKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEMKE---PNDVTFNILISAYCNEQKL 264
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA- 231
+ + ++ P +VT ++ LC E RV EAL++ E RV + V A
Sbjct: 265 IQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLE---RVESKGGKVDVVAC 321
Query: 232 -SLIKGLCAVGELSLALGFKEEMVR 255
+L+KG CA+G++ +A F EM R
Sbjct: 322 NTLVKGYCALGKMRVAQRFFIEMER 346
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + V+ + AL+V + + S + V + NTL+ GK+
Sbjct: 280 VPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQR 339
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F ME K P+ +YN+L+ G L+ A F++M ++ TF TLI GL
Sbjct: 340 FFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLS 399
Query: 203 LELRVDEALKLKEDM 217
+ R D+ LK+ E M
Sbjct: 400 IGGRTDDGLKILEMM 414
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 39/198 (19%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+I+ Y +L+ AL F++M + ++ +FNTL+ + G+ D + ++M+
Sbjct: 359 LIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSD 418
Query: 153 SPDACS---YNILMHGCVVSRRLEDAWK-------------------------------- 177
+ YN +++G R EDA +
Sbjct: 419 TVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGGMDDLK 478
Query: 178 -VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIK 235
+D+M+ P+++ LI+ +++E+L+L DM+ R Y P + F ++I
Sbjct: 479 TAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVTRGY--LPRSSTFNAVII 536
Query: 236 GLCAVGELSLALGFKEEM 253
G C ++ + F E+M
Sbjct: 537 GFCKQDKVMNGIKFVEDM 554
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP I+ +I Y + +E +L++ ++M + +FN ++ K+
Sbjct: 490 VPSIIVSHCLIHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIK 549
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ M E+ PD SYN L+ V ++ AW +F M+++ + P + +L++ L
Sbjct: 550 FVEDMAERGCVPDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVPDPSMWSSLMFCL 608
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 3/189 (1%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+++H+ ++VP++ + V+S A ++ A+ + EM V ++FN +L A
Sbjct: 299 RVVHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVV-AAEAFNPVLGA 357
Query: 132 MLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
ML G + LF M+ K +P A +YN+L+HG ++ R + A V M + + P
Sbjct: 358 MLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPG 417
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++T+G ++ GL R+++A K+ E+ MR + P+ VF+ +I G C +GE+ A
Sbjct: 418 VMTYGAVVDGLVRCGRLEDACKVIEE-MRSKGLVPNEFVFSPVITGFCKLGEVDRASRVW 476
Query: 251 EEMVRNKIE 259
+ MV I+
Sbjct: 477 DTMVAAGIK 485
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 4/205 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L A D+ ++H++ D V E F V+ R + A ++F M
Sbjct: 317 YSTVVSALADAGRVDDAVALVHEMVVDGVVAAEA--FNPVLGAMLRTGDVTGAAKLFSFM 374
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ ++N LL+ +L CG+ + + ME+ V P +Y ++ G V RL
Sbjct: 375 QLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGRL 434
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA KV +EM + L P F +I G C VD A ++ D M +KP+ ++++
Sbjct: 435 EDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRV-WDTMVAAGIKPNVVLYSA 493
Query: 233 LIKGLCAVGELSLALGFKEEMVRNK 257
+I GL G+++ A EM+ K
Sbjct: 494 MIDGLARCGKMTEAELLFREMIEAK 518
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++ L R ++ +++ +++ +VP E +F VI+ + + ++ A +V
Sbjct: 417 GVMTYGAVVDGLVRCGRLEDACKVIEEMRSKG-LVPNEFVFSPVITGFCKLGEVDRASRV 475
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+D M + ++ V ++ +++ + CGK+ LF +++E P+ +Y+ ++ G
Sbjct: 476 WDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRGYFQ 535
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A +++ML+ P VT+ LI GLC R +A+ + + M+ V PD
Sbjct: 536 IGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCV-PDTI 594
Query: 229 VFASLIKGLCAVGELSLALG-FKEEMVRNKIEMD 261
+ S+IKG C G + L F + + R D
Sbjct: 595 AYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPD 628
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 27/168 (16%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM- 148
CNV GR++ A+ V+ M ++ +++ G +D LF M
Sbjct: 568 LCNV----GRSK---DAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDML 620
Query: 149 -EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT----------- 196
PD YN+L+ G + ++ L A + ++ML + P VT T
Sbjct: 621 ARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTCNTFLREIEVGQKG 680
Query: 197 ------LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L+ LC R A ++ M+ Y V P+A V +++G+C
Sbjct: 681 QEFLEGLVVRLCNRKRNKAAGEVLMVMLAKYIV-PEAAVLEMVVRGVC 727
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 9/210 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L +A D+ ++LH++ D V P+ + F +++ +A E A +
Sbjct: 9 DVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
M+ N + + ++NTL++ + +DR L ++++VS PD +Y+IL G
Sbjct: 68 LAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTL---VDEFVSSGFVPDVVTYSILADG 124
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+++A+++ EM P LVT+ TLI GLC + ++A +L E ++ V P
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFV-P 183
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D + ++ GLC G L AL E M++
Sbjct: 184 DVVTYTIIVDGLCKEGRLDKALKMVEGMLK 213
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 9/195 (4%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R + Y+ +I+ L + + D + ++ + + VP+ + + + + ++ A
Sbjct: 77 RPSCCTYNTLISGLCKQQNVDRAKTLVDEFVS-SGFVPDVVTYSILADGLCKRGRIDEAF 135
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILM 163
++ EMS + ++NTL++ + K ++ ++++E VS PD +Y I++
Sbjct: 136 ELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKA---YELLETLVSSGFVPDVVTYTIIV 192
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RL+ A K+ + MLKR P+++T+ L+ GLC RVDEA + ++M+ +
Sbjct: 193 DGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS-KDC 251
Query: 224 KPDAQVFASLIKGLC 238
DA + SL+ G C
Sbjct: 252 TADALAYVSLVNGYC 266
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 2/179 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
++ +V P+ + +I +A + A ++ EM V +FN++++ + GK
Sbjct: 2 NERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKF 61
Query: 139 DRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+R L +M E+ P C+YN L+ G + ++ A + DE + P +VT+ L
Sbjct: 62 ERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSIL 121
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
GLC R+DEA +L ++M P+ + +LI GLC + A E +V +
Sbjct: 122 ADGLCKRGRIDEAFELVKEMSG-NGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSS 179
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 93/170 (54%), Gaps = 6/170 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I +L + DE +L ++ DT + +E+ + VI +A L+ A ++
Sbjct: 497 NTVTYNIFIDRLCKEGRLDEASSLLSEM--DT--LRDEVSYTTVIIGLCKAEQLDRASKL 552
Query: 110 FDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
EM + + T +FN L++A ++D L ++M ++ SP +YN+++
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+++ AW++FDEM R + + V++ LIYGLC + R EAL++ E+M
Sbjct: 613 KLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEM 662
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRR 171
M+ V V ++N L++ + K D+ ++ L +++++ V+PD ++N +M G + +
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E A + M +R +P+ T+ TLI GLC + VD A L ++ + V PD ++
Sbjct: 61 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFV-PDVVTYS 119
Query: 232 SLIKGLCAVGELSLALGFKEEMVRN 256
L GLC G + A +EM N
Sbjct: 120 ILADGLCKRGRIDEAFELVKEMSGN 144
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 105/242 (43%), Gaps = 35/242 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I+ L + + +++H++ + VV + +I + L+ AL + D M
Sbjct: 430 YNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHM 489
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME------------------------ 149
+ V+ ++N ++ + G++D + L M+
Sbjct: 490 TGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRA 549
Query: 150 ----------KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
K + + ++N+L+ ++RL++A + + M++R P+++T+ +I
Sbjct: 550 SKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVIT 609
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LC +VD+A +L D M V + + + LI GLC G AL EEM + E
Sbjct: 610 CLCKLDKVDKAWELF-DEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCE 668
Query: 260 MD 261
+D
Sbjct: 669 ID 670
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 4/220 (1%)
Query: 36 PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
PN E + N+ Y++++ L + DE L + H VP+ + + +I
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM-HSAGCVPDVVSYNIIID 365
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
+A + A QV D+M + ++NTL+ + D + + M K V P
Sbjct: 366 GLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDP 425
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKL 213
D +YN L+ G + RL DA+++ EML+ + T+ T+I LC E + +AL L
Sbjct: 426 DNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLL 485
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
D M + V+ + + I LC G L A EM
Sbjct: 486 M-DHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM 524
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 1/158 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A + M S V S+N +++ + K + Q+++ + PDA +YN
Sbjct: 338 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 397
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM R +DA + M+K + P VT+ TLI GL R+ +A +L +M+R
Sbjct: 398 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V + ++I LC G L AL + M + +E
Sbjct: 458 CVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 495
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I L +A ++ ++L L + VP+ + + ++ + L+ AL++
Sbjct: 149 NLVTYNTLIDGLCKASKTEKAYELLETLVS-SGFVPDVVTYTIIVDGLCKEGRLDKALKM 207
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY--------- 159
+ M +V ++ L+ + G++D +F +++ K + DA +Y
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 267
Query: 160 -----------------------NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
N LM G RL++ VF++M R P + T+
Sbjct: 268 SSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 327
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ GLC +VDEA E M V PD + +I GL + A ++M++
Sbjct: 328 VMDGLCKHGKVDEAFPFLESMHSAGCV-PDVVSYNIIIDGLFKASKPKEARQVLDQMIQA 386
Query: 257 KIEMDA 262
I DA
Sbjct: 387 GIPPDA 392
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L R DE I ++ + + + ++++ Y ++ + A +V
Sbjct: 219 SVITYTALMEGLCRTGRVDEAHHIFKEMVS-KDCTADALAYVSLVNGYCKSSRTKEAQKV 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
D + + +N L++ G++D + ++F+ M + P+ +YNI+M G
Sbjct: 278 VDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCK 334
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A+ + M P +V++ +I GL + EA ++ + M++ + PDA
Sbjct: 335 HGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQA-GIPPDAV 393
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ C A+G + M++ ++ D
Sbjct: 394 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPD 426
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKZGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTXINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDXALRLVEEM 246
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDXAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCXSGNLDAAADVLKAMXRL-SVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKZGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMXRL-SVPTEAGHYGVLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C + RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EMV ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPD 316
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDXYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKK 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
++ A++++ M S ++ + ++NTL+ + G + + DL +++ K + PD +Y
Sbjct: 261 GRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 381 V-GLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRN 416
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKQGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++FD M V+RT+KS++ L +L G+ F +++ + + P ++N+L+ G
Sbjct: 100 VKLFDRMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVLIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G ++ EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMXEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 72/272 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ +I GRA L HA
Sbjct: 12 HELVYNVLHSAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKS-------------- 124
+++FD M V+RT+KS
Sbjct: 72 PKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFDRMEELGVERTIKSYDALFKVILRRGRY 131
Query: 125 ---------------------FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
FN L+ GK++ F+ M+ + +SPD +YN +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G +++ +A K F EM R ++PT+VT+ TLI G +VD+AL+L E+ M+ +
Sbjct: 192 INGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KP+A +++L+ GLC ++S A +EM+
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMM 282
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + + A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMXEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLITS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKSGHLDAASDVLKAMIRL-SVPTEAGHYGVLIENFCKAGQYDQAVKLLDKVIEKDI 357
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKQGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMVRL-SVPTEAGHYGVLIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 316
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 97/183 (53%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C + +D A + ++ M++ N + D V+ +LI GLC G+ A EM+ ++
Sbjct: 326 GCCKDGDLDTAFEHRKRMIQE-NTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKIDDANELFDEMLVKG-LVPNSVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E + +A K+ +M+
Sbjct: 321 TTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ + + +I YGRAR E AL VF+EM V+ T K++N
Sbjct: 238 YKEVSKIYDQMQR-SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 296
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + + PD SY ++ V + +E A K F +
Sbjct: 297 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 356
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GTLI G V++ +++ E MR+ +K + + +++
Sbjct: 357 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEK-MRLSGIKANQTILTTIMDASGRCKNFGS 415
Query: 246 ALGFKEEM 253
ALG+ +EM
Sbjct: 416 ALGWYKEM 423
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQV 109
+ Y +I+ F E +++ L + + + P++ ++ +I Y +A E A +V
Sbjct: 153 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 212
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F M V ++ ++N+L++ + ++ ++ D Q+ + PD SY +L+ +
Sbjct: 213 FSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD--QMQRSDIQPDVVSYALLIKAYGRA 270
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR E+A VF+EML ++PT + L+ + V++A + + M R + PD
Sbjct: 271 RREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-RIFPDLWS 329
Query: 230 FASLIKGLCAVGELSLALGF 249
+ +++ ++ A F
Sbjct: 330 YTTMLSAYVNASDMEGAEKF 349
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + ++IT G+ F+ +++L L P I + ++ YGR +A
Sbjct: 78 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSK-MGSTPNVISYTALMESYGRGGKCNNA 136
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKY--VSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + EK + PD Y+++
Sbjct: 137 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 196
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A KVF M+ + + + VT+ +L + E E K+ + M R +
Sbjct: 197 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRS-D 252
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LIK AL EEM+
Sbjct: 253 IQPDVVSYALLIKAYGRARREEEALSVFEEML 284
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A+ + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAVDVLKAMIRL-SVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|242038361|ref|XP_002466575.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
gi|241920429|gb|EER93573.1| hypothetical protein SORBIDRAFT_01g010260 [Sorghum bicolor]
Length = 771
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHG 165
VF+E+S + V+ +N ++A ++ LF M+ VSPD C+YN ++
Sbjct: 212 VFEELSRRGLPSNVRLYNICIHAFGKWRQLGMSLRLFAAMKAATPPVSPDICTYNSVIRA 271
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
VV R+ DA +FDEM ++P + T+ ++ G C R+D+AL++ ++M VK
Sbjct: 272 LVVGARVPDALVIFDEMKSSGIEPDVFTYRAVMNGCCKSFRMDDALRVFQEMRGSSGVKS 331
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D V+ SL+ GL +L A GF E MV + I+ A
Sbjct: 332 DVVVYNSLLDGLFKAKKLDEACGFFETMVADGIQCSA 368
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQ 108
N+ Y++ I G+ + ++ +K T V P+ + +VI + AL
Sbjct: 224 NVRLYNICIHAFGKWRQLGMSLRLFAAMKAATPPVSPDICTYNSVIRALVVGARVPDALV 283
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VSPDACSYNILM 163
+FDEM S ++ V ++ ++N C K RM D ++ ++ V D YN L+
Sbjct: 284 IFDEMKSSGIEPDVFTYRAVMNG---CCKSFRMDDALRVFQEMRGSSGVKSDVVVYNSLL 340
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +++L++A F+ M+ +Q + T TLI GL R + A +L ++ R +
Sbjct: 341 DGLFKAKKLDEACGFFETMVADGIQCSASTHNTLIDGLFKNGRAEAACRLFYELRRKGQL 400
Query: 224 KPDAQVFASLIKGLCAVG---ELSLALGFKEEMVRNKIEMD 261
D ++ +++ C G +++ A+ +EM + +D
Sbjct: 401 L-DGIAYSIMVREFCKEGMGDQVAEAVELVKEMEQQGFSVD 440
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++T + +V ILH+ ++ P ++ N +I G+ E A + D
Sbjct: 613 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDVATYNLIIQGLGQMGKAEVASTIIDR 670
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+S V + +NTL+N + GK++ LF QI+ + PD ++N L++ + R
Sbjct: 671 LSKKGVYMDIVMYNTLINQLGKVGKVEEAGCLFEQIIRSGMKPDVVTFNTLININAKAGR 730
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L++A K M+ + P T LI+
Sbjct: 731 LKEADKYLRRMITEGIAPNYATETILIF 758
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 591 LSVACKLFEIFTNLGNKGTSYTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDVATYNL 650
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + E A + D + K+ + +V + TLI L +V+EA L E ++R
Sbjct: 651 IIQGLGQMGKAEVASTIIDRLSKKGVYMDIVMYNTLINQLGKVGKVEEAGCLFEQIIR-S 709
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + M+ I
Sbjct: 710 GMKPDVVTFNTLININAKAGRLKEADKYLRRMITEGI 746
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A VF+ ++ + ++ +V SFNTL+N + G +D L M V PD +Y++L++
Sbjct: 155 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLIN 214
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 215 GLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 273
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 274 PDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPD 310
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++FDEM + +F TL++ G++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TL
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I G C E ++ A + ++ M++ N++ D + +LI GLC G
Sbjct: 318 IDGXCKEGDLETAFEHRKRMIQE-NIQLDDVGYTALISGLCQEG 360
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DKGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M++ +Q V + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 374 SV-GLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 110/214 (51%), Gaps = 5/214 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLL 103
K F +++ Y+++I L M D + +QL K + + P + + +I +
Sbjct: 155 KGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCK--PTVVTYTILIEATLLQGGI 212
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
+ A+++ DEM N+Q + ++N+++ M G +DR + I K +PD +YNIL
Sbjct: 213 DEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNIL 272
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + E +++ +M+ R + +VT+ LI +C + +V+E + L +DM +
Sbjct: 273 LRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKK-KG 331
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+KPD + LI LC G + LA+ + M+ +
Sbjct: 332 LKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISD 365
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 4/206 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I L +K D+ Q++H L++ P+ I + +I+ + RA ++ A QV D M +
Sbjct: 98 LIHGLFTSKTIDKAIQVMHILENHGH--PDLIAYNAIITGFCRANRIDSAYQVLDRMKNK 155
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+ ++N L+ ++ + G +D + Q++++ P +Y IL+ ++ +++A
Sbjct: 156 GFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEA 215
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
K+ DEML+ LQP + T+ ++I G+C E VD A ++ + PD + L++
Sbjct: 216 MKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISS-KGYAPDVITYNILLR 274
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
GL G+ +MV E +
Sbjct: 275 GLLNQGKWEAGYELMSDMVARGCEAN 300
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++I+ + R +E +L +K + P+ + +I+ + ++ A++V
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKG-LKPDGYCYDPLIAALCKEGRVDLAIEV 358
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
D M S + ++NT+L + + D +F+ + E SP+A SYN +
Sbjct: 359 LDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWS 418
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDA 227
+ A + EML + + P +T+ +LI LC + VDEA++L DM M KP
Sbjct: 419 TGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSV 478
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ ++ GLC V +S A+ MV
Sbjct: 479 VSYNIVLLGLCKVSRVSDAIEVLAAMV 505
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ II + R D QI+ + P+ I + ++ E ++
Sbjct: 230 DMFTYNSIIRGMCREGYVDRAFQIISSIS-SKGYAPDVITYNILLRGLLNQGKWEAGYEL 288
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+M + + V +++ L++++ GK++ L + M+K + PD Y+ L+
Sbjct: 289 MSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCK 348
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++ A +V D M+ P +V + T++ LC + R DEAL + E + V P+A
Sbjct: 349 EGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEV-GCSPNAS 407
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ S+ L + G ALG EM+ ++ D
Sbjct: 408 SYNSMFSALWSTGHKVRALGMILEMLDKGVDPDG 441
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 4/194 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ YD++I L RAK E + +L L+++ P + + +I + +A + A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM-TDLFQIMEKYVSPDACSYNILMHG 165
Q+F EM + V +++TL+ + G+ + L +++ K + P Y+ ++ G
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDMMRVYNVK 224
+ L+ A VFD M+ QP L + +LIYGLC R+ D L++KE M
Sbjct: 443 LCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKE--MTERGCS 500
Query: 225 PDAQVFASLIKGLC 238
PD + +LI GLC
Sbjct: 501 PDGVTYGTLIVGLC 514
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 4/212 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L +Y +I +A + +L +K + + + +I + R + ++ A ++
Sbjct: 256 TLANYTSVIGGHCKAGDMGKAYHLLEDMKRKG-YQGDNLTYNTLIHGHCRLQEIDRAYEL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
+EM S + + +++ L+ + ++ DL + E +P+ SYN L+ G
Sbjct: 315 LEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFS 374
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R+ DA+++F EM+ P +VT+ TLI GLC R EA E+M+ + P
Sbjct: 375 KAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVG-KKILPKV 433
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V++S+I GLC GEL A + MV N +
Sbjct: 434 PVYSSVISGLCRAGELDAASTVFDSMVANGCQ 465
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 35/239 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L A E L ++ +++P+ ++ +VIS RA L+ A V
Sbjct: 397 DVVTYSTLIRGLCNAGRASEAHSYLEEMV-GKKILPKVPVYSSVISGLCRAGELDAASTV 455
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHG-CV 167
FD M + Q + +N+L+ + G++ D + ++ E+ SPD +Y L+ G C
Sbjct: 456 FDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCR 515
Query: 168 VSRR-------------------------------LEDAWKVFDEMLKRRLQPTLVTFGT 196
SR LE A +V +L PT + T
Sbjct: 516 WSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYAT 575
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+I LC E + EA +L EDM+ +KPD +L+ +C + +A+ F EEMVR
Sbjct: 576 VIESLCKENNLAEARQLLEDMIGA-GIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVR 633
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
LE AL+ F++MSS T + L++ + ++D F+ M+ P+ +Y ++
Sbjct: 176 LELALRYFEKMSSIPCAAT---WTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTYTVV 232
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G V + ++ +A +V EM PTL + ++I G C + +A L EDM R
Sbjct: 233 INGLVKAGKVAEAERVLQEMPV----PTLANYTSVIGGHCKAGDMGKAYHLLEDMKR-KG 287
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ D + +LI G C + E+ A EEM N
Sbjct: 288 YQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSN 321
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A + FR+ + Y+ L R +E ++ + K ++P+ I + +I
Sbjct: 80 AGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKE-KWPQELIPDSITYGILIRGLCNF 138
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
L+ A +++EM ++ V + LLNA+ G ++ F+ M P A ++
Sbjct: 139 GKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSI--PCAATWT 196
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ G + R+++A F+EM K P T+ +I GL +V EA ++ ++M
Sbjct: 197 ILIDGLFRAIRVDEACYYFEEM-KHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEM--- 252
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + S+I G C G++ A E+M R + D
Sbjct: 253 --PVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGD 291
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILM 163
A+ +EM + +V +++TLLNA+ GK + + + + S PD Y L+
Sbjct: 624 AMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLI 683
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
++E+A V E+ + ++V + TL+ GL + +L +M R V
Sbjct: 684 AAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFV 743
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+A F LI+G C +G+ A+ EM
Sbjct: 744 VNEA-TFNILIQGFCRLGQTDRAVRVLSEM 772
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 38/185 (20%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L +A E +L +L T P+E+ + +I+ Y +E A V E+
Sbjct: 643 YSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQEL 702
Query: 114 SS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
S + +Q V +YN L+ G +R L
Sbjct: 703 KSKWGIQSIV-----------------------------------AYNTLLKGLFRTRNL 727
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ +++ EM + TF LI G C + D A+++ +M +V + P A +
Sbjct: 728 QMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEMKKV--LTPSAAIIKF 785
Query: 233 LIKGL 237
L+ L
Sbjct: 786 LVDEL 790
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + K FDE + ++ H ++P+ + + ++I ++ + +ALQ+ D+M
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V T++++N++L+A+ ++D+ L ++ +K + P+ +Y+IL+ G S +L
Sbjct: 427 HDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKL 486
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA KVF+ +L + + T+ +I G C+E +EAL L M PDA+ +
Sbjct: 487 EDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSK-MEDNGCIPDAKTYEI 545
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
+I L E +A EM+
Sbjct: 546 IILSLFKKDENDMAEKLLREMI 567
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 5/218 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ + Y +I L + +L ++ + V P +++ +I + +L+ A
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVKLVNEA 244
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMH 164
+F EM S + V +++ L++ GK++ DLF I+E + PD ++NIL++
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN-IKPDVYTFNILVN 303
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++++ VFD M+K+ ++P VT+ +L+ G CL V++A + M + V
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG-GVN 362
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD Q ++ +I G C + + A+ +EM R I D
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 38/235 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II + + K+ +E + ++ + P+ + + +IS + L A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMI-SKGISPDVVTYSALISGFCILGKLNDAIDL 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
F++M N++ V +FN L+NA GK+ +F +M K
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342
Query: 152 ------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
V+PD SY+I+++G ++ ++A +F EM ++ + P +VT
Sbjct: 343 VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT 402
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
+ +LI GL R+ AL+L D M V P + + S++ LC + ++ A+
Sbjct: 403 YSSLIDGLSKSGRISYALQL-VDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIA 456
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A+ +F+ + N FN +L +++ + L Q ME + + P+ + NI
Sbjct: 66 VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ + A+ VF ++LK P +TF TLI GLCL+ ++ +A L D +
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAF-LFHDKVVAL 184
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D + +LI GLC VGE AL + + N ++
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQ 222
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ RA D ++++ ++ + P + F ++++ +A +E A +V
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEM + V S+NTLL+ G + +F ++ ++ + PD ++ L+H
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 305
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A + +M +R L+ VTF LI G C + +D+AL E+ MR ++P
Sbjct: 306 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE-MRKCGIQPSVV 364
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C +G + LA EM +++ D
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPD 397
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N + + +I + D+ + +++ + P + + +I+ Y + ++
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMD 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++ EM + V+ V +++T+++ G +D L Q +++K V PDA +Y+ L+
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +RL DA ++F+ ML+ +QP T+ TLI G C E V++AL L ++M+R V
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR-KGV 499
Query: 224 KPDAQVFASLIKGL 237
PD ++ LI GL
Sbjct: 500 LPDVVTYSVLINGL 513
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHALQVFD 111
Y+ ++ L A + + + L+H V P + N++ + R RL E A+ V
Sbjct: 121 YNAVLLALSDASLPSARRFLSSMLRHG--VAPNVYTY-NILVRALCARGRL-EEAVGVVG 176
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVS 169
+M ++NTL+ A G++D + +M E P+ ++N +++G +
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+E A KVFDEM++ L P +V++ TL+ G C + E+L + +M + + PD
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ-RGLVPDVVT 295
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLI C G L A+ +M + M+
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 21/233 (9%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ +KP +++ Y II+ + D Q L+Q V+P+ I + ++I
Sbjct: 390 EAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCE 445
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ L A ++F+ M VQ ++ TL++ G +++ L +++ K V PD +
Sbjct: 446 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------GLCL 203
Y++L++G S R ++A ++ ++ P + + L+ G C+
Sbjct: 506 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 565
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + EA K+ + M+ N K D V++ LI G C G + AL F ++M+R+
Sbjct: 566 KGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+V ++N +L A+ L ++ V+P+ +YNIL+ RLE+A V
Sbjct: 117 SVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVG 176
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M P VT+ TL+ C +D A ++ M N KP+ F S++ GLC
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236
Query: 241 GELSLALGFKEEMVRNKIEMD 261
G + A +EMVR + D
Sbjct: 237 GRMEGARKVFDEMVREGLAPD 257
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKXGQYDKAVKLLDKLIEKDI 357
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 97/182 (53%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 120 PASLYFFNILMHRFCKEGDIRL---AQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDE 176
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD +Y++L++G +++DA ++FDEML + L P VTF TLI
Sbjct: 177 GFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLID 236
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + M+ ++ PD + +L GLC G+L A +EM ++
Sbjct: 237 GHCKNGRVDLAMEIYKQMLS-QSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLK 295
Query: 260 MD 261
D
Sbjct: 296 PD 297
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y R L+ ++ + M + VQ V +++ L+N + K+D +L
Sbjct: 156 PSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 215
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TL YGLC
Sbjct: 216 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCK 275
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G++ A ++ M++ I +D
Sbjct: 276 KGDLKQAHDLI-DEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLD 332
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++FDEM + +F TL++ G++
Sbjct: 185 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 244
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + +SPD +YN L +G L+ A + DEM + L+P +T+ TL
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 304
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I G C E ++ A + ++ M++ N++ D V+ +LI GLC G
Sbjct: 305 IDGCCKEGDMETAFEHQKRMIQE-NIRLDDVVYTALISGLCQEG 347
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 104/218 (47%), Gaps = 6/218 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 182 NAMHASGVQPDVYT---YSVLINGLCKESKMDDANELFDEML-DKGLVPNGVTFTTLIDG 237
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL + G + + DL M K + PD
Sbjct: 238 HCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPD 297
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ GC +E A++ M++ ++ V + LI GLC E R +A K+
Sbjct: 298 KITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLR 357
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+M+ V +KP+ + +I C G++ +EM
Sbjct: 358 EMLSV-GLKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 126/294 (42%), Gaps = 47/294 (15%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP S +L LL+ +K PK AL LF + + P T + + + LI+ +L
Sbjct: 6 KPLSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHI---------FLLILRRLSDP 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
K+ V +I+ +K E+++ V+ Y ++++ AL F +M F + ++
Sbjct: 57 KLVVHVTRIVELIKTQKCKCTEDVVL-TVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME---------------------------------- 149
S+N LLNA + +++ E
Sbjct: 116 SYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWM 175
Query: 150 --KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
K + PD SY +++G V S L A +VFDEM +R L P ++ + +I G
Sbjct: 176 WSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDY 235
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ E +++ V P+ + +I GLC +G +L E M +N+ EMD
Sbjct: 236 VQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMD 289
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 110/211 (52%), Gaps = 2/211 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I L + FDE ++ ++K + + + ++I ++ A++V
Sbjct: 254 NVVTYNVMINGLCKMGRFDESLEMWERMKKN-ECEMDLFTYSSLICGLCDVGNVDGAVEV 312
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ EM +V V ++N LLN GKI +L+ +M K + SYNI + G +
Sbjct: 313 YKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIRGLFEN 372
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R++E+A V++ + +R T+G LI+GLC +++ALK+ ++ + K DA
Sbjct: 373 RKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKE-AKDGGDKLDAFA 431
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
++S++ GL G + ALG +M + E+
Sbjct: 432 YSSIVDGLSKQGRVDEALGIVHQMDKYGCEL 462
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 3/195 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + ++ +IL + K D + + +++ + ++ AL + +M
Sbjct: 397 YGVLIHGLCKNGHLNKALKILKEAK-DGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQM 455
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ + + N L+N + K++ F+ ME K SP SYN L++G + R
Sbjct: 456 DKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERF 515
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA+ EML++ +P ++T+ L+ GLC ++D AL L ++ V ++PD +
Sbjct: 516 SDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVL-VKGLEPDVTMHNI 574
Query: 233 LIKGLCAVGELSLAL 247
L+ GLC+ G++ AL
Sbjct: 575 LMHGLCSAGKIEDAL 589
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 108/243 (44%), Gaps = 42/243 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y I+ L + DE I+HQ+ K+ + P CN +I+ + RA LE A+ F
Sbjct: 432 YSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPH---VCNPLINGFVRASKLEEAICFFR 488
Query: 112 EMSSFNVQRTVKSFNTLLNA-------------------------MLTCG---------- 136
EM + TV S+NTL+N M+T
Sbjct: 489 EMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGK 548
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
KID +L+ Q++ K + PD +NILMHG + ++EDA ++ M + P LVT
Sbjct: 549 KIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHN 608
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
TL+ GL + R E + M +PD + +KGLC+ G +S + ++ ++
Sbjct: 609 TLMDGL-YKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALK 667
Query: 256 NKI 258
N I
Sbjct: 668 NGI 670
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 105/216 (48%), Gaps = 7/216 (3%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N++ Y++ I L + +E + L+ + + +I + L AL+
Sbjct: 357 HNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGA-DSTTYGVLIHGLCKNGHLNKALK 415
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHG 165
+ E + +++++++ + G++D + M+KY +SP C N L++G
Sbjct: 416 ILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVC--NPLING 473
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
V + +LE+A F EM + PT+V++ TLI GLC R +A ++M+ + KP
Sbjct: 474 FVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLE-KDWKP 532
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D ++ L+ GLC ++ +AL +++ +E D
Sbjct: 533 DMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPD 568
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/214 (19%), Positives = 111/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+++I + + + ++I +L + V P + + +I+ + + +L++
Sbjct: 218 DVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEM 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++ M + + ++++L+ + G +D +++ +++++ V D +YN L++G
Sbjct: 278 WERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCR 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++++++++ M K +V++ I GL +V+EA+ + E ++R D+
Sbjct: 338 AGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEAISVWE-LLRRRGSGADST 395
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LI GLC G L+ AL +E ++DA
Sbjct: 396 TYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDA 429
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARL 102
K ++ +++ Y L++ L + K D + Q+ + + ++ N++ +G A
Sbjct: 528 KDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVL--VKGLEPDVTMHNIL-MHGLCSAGK 584
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNI 161
+E AL ++ M N + + NTL++ + + + + ++ M K PD SYNI
Sbjct: 585 IEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNI 644
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ G R+ D +FD+ LK + PT +T+ L+
Sbjct: 645 TLKGLCSCGRISDGIALFDDALKNGILPTSITWYILV 681
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGILIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLIN 201
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 202 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 260
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEM 289
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 187 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 246
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIN 306
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI G C G A EM+ ++
Sbjct: 307 GCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365
Query: 260 MDA 262
DA
Sbjct: 366 PDA 368
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 186 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 241
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 242 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 301
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L++GC L+ A++ M++ ++ V + LI G C E R +A K+ +M+
Sbjct: 302 TTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLS 361
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 362 V-GLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRD 397
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G +DE LK M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 186 -ASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 220
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 8/179 (4%)
Query: 60 KLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
K GR + E+ +Q+L Q + P+ I + +I + L+ A + DEMS +
Sbjct: 240 KNGRVDLAMEIYKQMLSQ-----SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGL 294
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ ++ TL+N G +D + + ++++ + D +Y L+ G R DA K
Sbjct: 295 KPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEK 354
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+ EML L+P T+ +I C V KL ++M R +V P + L+ G
Sbjct: 355 MLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHV-PSVVTYNVLMNG 412
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDIPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCNSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDI 357
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 204 GLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 262
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 299
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 189 SGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDL 248
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 308
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C + +D A + ++ M++ N + D V+ +LI GLC G A EM+ ++
Sbjct: 309 GCCKDGDLDTAFEHRKRMIQE-NTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLK 367
Query: 260 MDA 262
DA
Sbjct: 368 PDA 370
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 188 ASGVQPDVYT---YSVLINGLCKESKIDDANELFDEMLVKG-LVPNSVTFTTLIDGHCKN 243
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 303
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E +A K+ +M+
Sbjct: 304 TTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLS 363
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 364 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 399
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 114/211 (54%), Gaps = 3/211 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D+ ++L ++ ++ + P +++ ++ Y +A E
Sbjct: 145 RPDVVTYGTLIRGLCDAADVDKAVELLREM-CESGIEPNVVVYSCLLQGYCKAGRWECVS 203
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+VF+EMS ++ V + L++++ GK+ + T + ++ME+ + P+ +YN+L++
Sbjct: 204 KVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSM 263
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+++A + + ML++ + VT+ TLI GL L +DEA+ L E+M+ V+P
Sbjct: 264 CKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEP 323
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ F S+I GLC G + A ++ M N
Sbjct: 324 NVVTFNSVIHGLCKTGRMRQAFQVRDMMAEN 354
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 115/258 (44%), Gaps = 5/258 (1%)
Query: 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-AK 65
+PF L R + + L P P + P + + Y+ ++ L R
Sbjct: 34 AAPFLAVLLRRGRAEASARLNRLLRLVPLPESPALLSSLPSVRDAVSYNTVLAALCRQGG 93
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
D +L + H+TR P + + ++ R A+ + +M + V+ V ++
Sbjct: 94 CLDAALFLLRVMAHETR--PTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTY 151
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
TL+ + +D+ +L + M E + P+ Y+ L+ G + R E KVF+EM
Sbjct: 152 GTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSG 211
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R ++P +V + LI LC E +V +A ++ + MM ++P+ + LI +C G +
Sbjct: 212 RGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMME-RGLEPNVVTYNVLINSMCKEGSVK 270
Query: 245 LALGFKEEMVRNKIEMDA 262
A+ + M+ + +DA
Sbjct: 271 EAMSLRNNMLEKGVALDA 288
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 93/178 (52%), Gaps = 2/178 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + + +I A ++ A+++ EM ++ V ++ LL G+ +
Sbjct: 142 SGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWEC 201
Query: 141 MTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++ +F+ M + + PD Y L+ +++ A +V D+M++R L+P +VT+ LI
Sbjct: 202 VSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLIN 261
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+C E V EA+ L+ +M+ V DA + +LI GL V E+ A+G EEM+ +
Sbjct: 262 SMCKEGSVKEAMSLRNNMLE-KGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGE 318
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 113/216 (52%), Gaps = 5/216 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ +A ++ V ++ ++ + P+ +++ +I R ++ A QV
Sbjct: 182 NVVVYSCLLQGYCKAGRWECVSKVFEEMS-GRGIEPDVVMYTGLIDSLCREGKVKKATQV 240
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
D+M ++ V ++N L+N+M G + L ++EK V+ DA +YN L+ G
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300
Query: 169 SRRLEDAWKVFDEML--KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+++A + +EM+ + ++P +VTF ++I+GLC R+ +A +++ DMM +
Sbjct: 301 VLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR-DMMAENGCACN 359
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F LI GL V ++ A+ +EM + +E D+
Sbjct: 360 LVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDS 395
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++L+I L R + +++ ++ + + P+ + +I+ + + ++ A +
Sbjct: 359 NLVTFNLLIGGLLRVHKVKKAMELMDEMA-SSGLEPDSFTYSILINGFCKMWQVDRAESL 417
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+M ++ + + LL A+ G +++ + F M K D +Y+ ++HG
Sbjct: 418 LSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAYSTMIHGACRL 477
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLI--YGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R + A + ML L P VT+ LI + +L E + LK+ M PD
Sbjct: 478 RDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERV-LKQ--MTASGFVPDV 534
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
VF SLIKG A G+ L EM I +D+
Sbjct: 535 AVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDS 569
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 214
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 215 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 273
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHHLIDEM 302
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 259
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 319
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +L GLC G A EM+ ++
Sbjct: 320 GCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLK 378
Query: 260 MDA 262
DA
Sbjct: 379 PDA 381
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 199 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 254
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 255 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 314
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + L GLC E R +A K+ +M+
Sbjct: 315 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLS 374
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 375 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G +DE +LK M+
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 199 -ASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 233
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 6/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M +Q+ ++ V P+ F +I + +++ F EMS F
Sbjct: 280 IVLKRGRTSM---AKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRF 336
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
V ++NTL++ + GK+ ++ + M K +SP+ +Y L+ G + + +
Sbjct: 337 KCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMA 396
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + EM+ R L+P +T+ TLI GLC ++D+ ++ E M+ PD +L
Sbjct: 397 EALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTL 456
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
IK C +G+L A E+M +++ D+
Sbjct: 457 IKAHCTMGKLEEAFSVFEKMSELRVQPDS 485
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
L+L + P AL F+ EA K F +N Y L+I LGR++ + + +
Sbjct: 195 LQLIRTPAKALHFFRW-------VEA---KGFTHNEQSYFLMIEILGRSRNLNAARNFVF 244
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
++ + G A +++VF M V +V +FN+LL+ +L
Sbjct: 245 SIEKKS----------------GGAE----SIKVFKTMKEIGVSPSVVTFNSLLSIVLKR 284
Query: 136 GKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G+ LF ++++ Y V+PD ++NIL+ G ++ +++ + F EM + + P +VT
Sbjct: 285 GRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVT 344
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVY-NVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ TL+ GLC +V A + + M++ N+ P+ + +LI+G C +++ AL E
Sbjct: 345 YNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAE 404
Query: 253 MVRNKIE 259
MV ++
Sbjct: 405 MVSRGLK 411
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 13/224 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP N + Y+ +I L A+ D++++IL + D +P+ +I +
Sbjct: 407 SRGLKP---NKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTM 463
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------- 152
LE A VF++MS VQ +++ L+ ++ G R + F ++ EK +
Sbjct: 464 GKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGC 523
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P +YN + + + + A +VF +++KR Q ++ TLI G C E +
Sbjct: 524 KPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDP-PSYKTLILGHCREGTPEAGFD 582
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M+R + PDA+ + +I GL G+ LA E+M+++
Sbjct: 583 LLVLMLR-RDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKS 625
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
++ KVF M + + P++VTF +L+ + R A +L ++M+ Y V PD F L
Sbjct: 254 ESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNIL 313
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
I+G C + F +EM R K + D
Sbjct: 314 IRGFCMNSMVDEGFWFFKEMSRFKCDPD 341
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ + + +I YGRAR E AL VF+EM V+ T K++N
Sbjct: 302 YKEVSKIYDQMQR-SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 360
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + + PD SY ++ V + +E A K F +
Sbjct: 361 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 420
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GTLI G V++ +++ E MR+ +K + + +++
Sbjct: 421 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEK-MRLSGIKANQTILTTIMDASGRCKNFGS 479
Query: 246 ALGFKEEM 253
ALG+ +EM
Sbjct: 480 ALGWYKEM 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQV 109
+ Y +I+ F E +++ L + + + P++ ++ +I Y +A E A +V
Sbjct: 217 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 276
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F M V ++ ++N+L++ + ++ ++ D Q+ + PD SY +L+ +
Sbjct: 277 FSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD--QMQRSDIQPDVVSYALLIKAYGRA 334
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR E+A VF+EML ++PT + L+ + V++A + + M R + PD
Sbjct: 335 RREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-RIFPDLWS 393
Query: 230 FASLIKGLCAVGELSLALGF 249
+ +++ ++ A F
Sbjct: 394 YTTMLSAYVNASDMEGAEKF 413
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + ++IT G+ F+ +++L L P I + ++ YGR +A
Sbjct: 142 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSK-MGSTPNVISYTALMESYGRGGKCNNA 200
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKY--VSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + EK + PD Y+++
Sbjct: 201 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 260
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A KVF M+ + + + VT+ +L + E E K+ + M R +
Sbjct: 261 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRS-D 316
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LIK AL EEM+
Sbjct: 317 IQPDVVSYALLIKAYGRARREEEALSVFEEML 348
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 121/235 (51%), Gaps = 14/235 (5%)
Query: 28 LFKNPNPNP-----NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDT 81
LFK+ NP+ N E+ +KP ++ Y+ +I+ L ++ ++ +++L ++ +
Sbjct: 107 LFKDGNPDQAVKLFENMESSRVKP---EIVTYNTVISGLCKSGNLEKARELLEEMIRKGG 163
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ P+ + + +I+ + RA + A ++M + + V + N L++ + G ++
Sbjct: 164 KSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEA 223
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
++ M+ PD +YN ++H V+ ++ +A ++ M P LVTF TL+ G
Sbjct: 224 LEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDG 280
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
C + AL++ E+M R N+ PD + L+ GLC VG++ +A EE+VR
Sbjct: 281 FCKAGMLPRALEVLEEMCR-ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVR 334
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 7/192 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARLLEHALQ 108
+++ Y ++ L ++ +E +++ ++ R ++ + +++S Y RA + A +
Sbjct: 340 DVIAYTSLVDGLCKSGEIEEAHKLVKEMS--VRGCRTGVVMYSSLVSGYCRAGNVHKARE 397
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGC 166
+ EM S N+ + ++N +L ++ G I + L + YV PD +YN L+ G
Sbjct: 398 ILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV-PDVVTYNTLIDGL 456
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ R+ +A + DEM R P VT G++++GLC RVD+A L +M R + P+
Sbjct: 457 CKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA-PN 515
Query: 227 AQVFASLIKGLC 238
V+ SLI GLC
Sbjct: 516 VVVYTSLIDGLC 527
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 8/208 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L + D+ ++ ++ +RV PE + + VIS ++ LE A ++ +EM
Sbjct: 100 FNVLIHGLFKDGNPDQAVKLFENME-SSRVKPEIVTYNTVISGLCKSGNLEKARELLEEM 158
Query: 114 SSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
+ + ++NTL+NA +I + M+ ++PD + NIL+ G
Sbjct: 159 IRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDG 218
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+E+A ++ D M P ++T+ ++I+ LC+ +V EA ++++ + PD F
Sbjct: 219 DVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEA----AEILKTMSCSPDLVTF 274
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
+L+ G C G L AL EEM R I
Sbjct: 275 NTLLDGFCKAGMLPRALEVLEEMCRENI 302
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 14/241 (5%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
+R P LA+Q F A +++++ Y+ ++ L ++ ++
Sbjct: 1 MRRSSRPDLAIQFFD---------WAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYK 51
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
L H + P + F +I +A AL+ + F+V V FN L++ +
Sbjct: 52 DLLH-SGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKD 110
Query: 136 GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLV 192
G D+ LF+ ME V P+ +YN ++ G S LE A ++ +EM+++ + P +V
Sbjct: 111 GNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIV 170
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ TLI R+ EA +E M+ + PD L+ G+C G++ AL +
Sbjct: 171 TYNTLINAFYRASRIREACAFREK-MKAAGINPDVLTCNILVSGICKDGDVEEALEILDG 229
Query: 253 M 253
M
Sbjct: 230 M 230
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II L A E +IL + P+ + F ++ + +A +L AL+V
Sbjct: 238 DVITYNSIIHALCVAGKVVEAAEILKTMS----CSPDLVTFNTLLDGFCKAGMLPRALEV 293
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+EM N+ V ++ L+N + G++ L + I+ + PD +Y L+ G
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +E+A K+ EM R + +V + +L+ G C V +A ++ +M+ + N+ P
Sbjct: 354 SGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSI-NMVPPLF 412
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ ++ GL G +S A+ ++V
Sbjct: 413 TYNIVLGGLIKDGSISKAVSLISDLV 438
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 102/200 (51%), Gaps = 11/200 (5%)
Query: 50 NLLHYDLII---TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
NL+ + ++I K G+A E + L + V P+ IF +I + + A
Sbjct: 61 NLVTFKILIRGNCKAGQAMRALEFLRALDEFS----VAPDVYIFNVLIHGLFKDGNPDQA 116
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILM 163
+++F+ M S V+ + ++NT+++ + G +++ +L + M + +PD +YN L+
Sbjct: 117 VKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLI 176
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + R+ +A ++M + P ++T L+ G+C + V+EAL++ D M++
Sbjct: 177 NAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEIL-DGMKLAGP 235
Query: 224 KPDAQVFASLIKGLCAVGEL 243
PD + S+I LC G++
Sbjct: 236 VPDVITYNSIIHALCVAGKV 255
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+V+ ++ + +F L+ G+ R + + ++++ V+PD +N+L+HG
Sbjct: 48 KVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGL 107
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+ A K+F+ M R++P +VT+ T+I GLC +++A +L E+M+R P
Sbjct: 108 FKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAP 167
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI + A F+E+M I D
Sbjct: 168 DIVTYNTLINAFYRASRIREACAFREKMKAAGINPD 203
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 36/136 (26%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC--------LE-L 205
D SYN L+ V S KV+ ++L P LVTF LI G C LE L
Sbjct: 26 DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85
Query: 206 RV--------------------------DEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
R D+A+KL E+ M VKP+ + ++I GLC
Sbjct: 86 RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFEN-MESSRVKPEIVTYNTVISGLCK 144
Query: 240 VGELSLALGFKEEMVR 255
G L A EEM+R
Sbjct: 145 SGNLEKARELLEEMIR 160
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFILLNKMEQG-KLEPGVLIYTTIIDGLCKNKHMDDALNL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + G+ + L M E+ ++PD +++ L+ V
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P++VT+ +LI G C+ R+DEA ++ E M+ + PD
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVV 397
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+++LIKG C + + EM
Sbjct: 398 SYSTLIKGFCKAKRVDEGMELFREM 422
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 122/236 (51%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + ++L + + ++
Sbjct: 275 ALNLFKE-------METKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + + L A +++DEM ++ ++ ++++L+N ++D +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K+ PD SY+ L+ G ++R+++ ++F EM +R L VT+ TLI GL
Sbjct: 384 FEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQ 443
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D A ++ ++M+ V P+ + +L+ GLC G+L A+ E + R+K+E
Sbjct: 444 AGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 103/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I DE +Q+ + KH P+ + + +I + +A+ ++ +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVSYSTLIKGFCKAKRVDEGM 416
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
++F EMS + ++ TL+ + G D ++F +++ V P+ +YN L+ G
Sbjct: 417 ELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +LE A VF+ + + +++PT+ T+ +I G+C +V++ L + + + VKPD
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPD 535
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G C G A +EM
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + ++++ Y ++ + A+ + D+M Q +FNTL++ + K L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVAL 208
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++ K PD +Y ++++G + A+ + ++M + +L+P ++ + T+I GLC
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCK 268
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+AL L ++ M ++P+ ++SLI LC G S A +M+ KI D
Sbjct: 269 NKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R P I F ++S + + + + ++M + + +++ L+N ++
Sbjct: 75 SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPL 134
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P+ + + L++G S+R+ +A + D+M QP VTF TLI+
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + ++ GLC G+ LA +M + K+E
Sbjct: 195 GLFLHNKASEAVALI-DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLE 253
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 86/160 (53%), Gaps = 2/160 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + ++I+ + L+ A Q+F+ M S + V S++TL+ ++D +L
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M ++ + + +Y L+ G + + A ++F EM+ + P ++T+ TL+ GLC
Sbjct: 419 FREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++++A+ + E + R ++P + +I+G+C G++
Sbjct: 479 NGKLEKAMVVFEYLQRS-KMEPTIYTYNIMIEGMCKAGKV 517
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y +I L +A D Q+I ++ D V P + + ++ + LE A+ V
Sbjct: 430 NTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ + ++ T+ ++N ++ M GK++ DLF + K V PD +YN ++ G
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E+A +F EM + P + TLI
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 115/220 (52%), Gaps = 11/220 (5%)
Query: 47 FRYNLLHYDLIIT---KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
F ++ Y+++I K G K EV + + Q V + + ++I + R +
Sbjct: 285 FSPDVFTYNILINGYCKEGNEKKALEVFEEMSQ----KGVRATAVTYTSLIYVFSRKGQV 340
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNIL 162
+ ++F+ ++ V +N L+N+ T G ++R ++ MEK + PD +YN L
Sbjct: 341 QETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTL 400
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVY 221
M G + RL++A + DEM KR +QP LV++ TLI G ++ + +AL+++++MM + +
Sbjct: 401 MRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGF 460
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
N P + +LI+GLC + + A +EMV I D
Sbjct: 461 N--PTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPD 498
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 36/250 (14%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I +++ +++ + P++ + +IS + + +E A+
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+VFDEM + V + +N L+ GK+D + M ++ ++ +YN+LMH
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHA 263
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM------- 218
+ R DA+ V +EM K P + T+ LI G C E +AL++ E+M
Sbjct: 264 LFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRAT 323
Query: 219 ---------------------RVYNV------KPDAQVFASLIKGLCAVGELSLALGFKE 251
R++NV +PD ++ +LI C G++ A
Sbjct: 324 AVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMA 383
Query: 252 EMVRNKIEMD 261
EM + +I D
Sbjct: 384 EMEKKRIPPD 393
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 30/251 (11%)
Query: 22 PKLALQLFKN---------PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
P AL LFK+ P + A P P L++T A+ +
Sbjct: 20 PAAALALFKSALSADRALCPLSVLPHLSASPSLPH--------LLLTASAAARPHATSLR 71
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH--ALQVFDEMSSFNVQRTVKSFNTLLN 130
+ QLK + +P V S + L A +F ++ + +FN +L
Sbjct: 72 LYAQLKSLSVPIP-------VASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLR 124
Query: 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQP 189
+ GK R +L + M + P+A +YN ++ G R++ A +V EM +R + P
Sbjct: 125 HLCATGKPVRALELLRQMPR---PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAP 181
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
T+ TLI G C R+++A+K+ ++M+ V P A ++ +LI G C VG+L +AL +
Sbjct: 182 DKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQY 241
Query: 250 KEEMVRNKIEM 260
+E+MV+ I M
Sbjct: 242 REDMVQRGIAM 252
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R +++ Y+ +I + +I+ +++ R+ P+++ + ++ + L+
Sbjct: 353 KGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKK-RIPPDDMTYNTLMRGFCLLGRLD 411
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
A + DEM+ +Q + S+NTL++ G I D + ++M+K +P +YN L+
Sbjct: 412 EARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALI 471
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
G R+ +DA + EM+ + + P T+ +LI GL E
Sbjct: 472 QGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTE 512
>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 369
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 116/229 (50%), Gaps = 5/229 (2%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
LF N + N+ + +K Y + + Y +++ + ++ ++L + V+
Sbjct: 69 LFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVL- 127
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ + +I+ + LE A+ V + M + +N L+N ++ K + +F
Sbjct: 128 DAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVF 187
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ M + SP +YNIL++G S R +A+ + EML++ L P+++T+ L+ GLCL
Sbjct: 188 REMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLG 247
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+++ AL+L + + KPD Q+ +LI GLC+VG+ LAL +M
Sbjct: 248 HKIEMALQLWNQVTK-NGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDM 295
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 3/195 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
DEV I +K V + I + ++ + + + +L+V + +++
Sbjct: 76 DEVNSIWELMKKGG-YVEDSITYGILVHGFCKNGYINKSLRVLETAERKGGVLDAFAYSA 134
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++N + K+++ + M K P+ YN L++G + + + EDA +VF EM
Sbjct: 135 MINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITH 194
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
PT+VT+ LI GLC R EA L ++M+ + P ++ L+KGLC ++ +A
Sbjct: 195 CSPTIVTYNILINGLCKSERFGEAYDLVKEMLE-KGLTPSVITYSLLMKGLCLGHKIEMA 253
Query: 247 LGFKEEMVRNKIEMD 261
L ++ +N + D
Sbjct: 254 LQLWNQVTKNGFKPD 268
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
E A++VF EM + T+ ++N L+N + + DL +++EK ++P +Y++L
Sbjct: 181 EDAIRVFREMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLL 240
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + ++E A ++++++ K +P + TLI+GLC + AL L DM +N
Sbjct: 241 MKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDM-NYWN 299
Query: 223 -----------------------------------VKPDAQVFASLIKGLCAVGELSLAL 247
++PD + +KGLC+ +S A+
Sbjct: 300 CAPNLVTQNTLMEGFYKDGDMRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAI 359
Query: 248 GFKEEMVRNK 257
F + VR K
Sbjct: 360 LFLNDAVRKK 369
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 79/154 (51%), Gaps = 1/154 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ ++ V +N +LN G+I +L+++M + + S+NI+
Sbjct: 6 IDGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREGNRSVASFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + R+++ +++ M K +T+G L++G C ++++L++ E R
Sbjct: 66 MRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGG 125
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V DA ++++I GLC +L A+ M+++
Sbjct: 126 V-LDAFAYSAMINGLCKETKLEKAISVLNGMIKS 158
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+++I L +++ F E ++ ++ + + P I + ++ +E ALQ++
Sbjct: 199 IVTYNILINGLCKSERFGEAYDLVKEML-EKGLTPSVITYSLLMKGLCLGHKIEMALQLW 257
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
++++ + V+ NTL++ + + GK L+ M + +P+ + N LM G
Sbjct: 258 NQVTKNGFKPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKD 317
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ +A ++ +LK LQP ++++ + GLC R+ +A+ D +R
Sbjct: 318 GDMRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAILFLNDAVR 367
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + +VP+E + +I Y R ++
Sbjct: 256 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 315
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+++ DEM ++ + N+L+N G+I + M + + PD+ SYN L+
Sbjct: 316 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 375
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +A+ + D+ML+ ++PT++T+ TL+ GLC D+AL++ MM+ V
Sbjct: 376 DGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMK-RGV 434
Query: 224 KPDAQVFASLIKGL 237
PD +++L+ GL
Sbjct: 435 APDEVGYSTLLDGL 448
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 123/297 (41%), Gaps = 63/297 (21%)
Query: 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
A L L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 39 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 89
Query: 73 ILHQL------KHDTRVVPEEII------------FCNVISFYGRARLLEHALQVFDEMS 114
L+QL K V+ +E++ F ++ Y L ++AL VFD M
Sbjct: 90 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 149
Query: 115 SFNVQRTVKSFNTLLN-----------------------------------AMLTCGKID 139
+++S N+LLN A GK+D
Sbjct: 150 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 209
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ ME V P+ +Y+ L++G V +E A V M ++ + +VT+ LI
Sbjct: 210 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 269
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
G C + ++DEA K+ M + PD + + LI G C G++ A+ +EM+R
Sbjct: 270 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 326
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 2/181 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P+ + ++ Y R A + D+M ++ TV ++NTLL + G D
Sbjct: 361 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 420
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ +M ++ V+PD Y+ L+ G E A ++ ++L R + +TF T+I
Sbjct: 421 DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 480
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
GLC ++ EA ++ D M+ PD + +LI G C + A K M R I
Sbjct: 481 SGLCKMGKMVEAEEIF-DKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 539
Query: 259 E 259
Sbjct: 540 S 540
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N + + GK+D F ++ K PD +Y L+HG + +++A+++ DEML
Sbjct: 683 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 742
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R L P +VT+ LI GLC VD A +L + + + P+ + +LI G C +G +
Sbjct: 743 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ-KGLFPNVVTYNTLIDGYCKIGNM 801
Query: 244 SLALGFKEEMVRNKIE 259
A K++M+ I
Sbjct: 802 DAAFKLKDKMIEEGIS 817
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
DE + +++ + V P + + ++I+ Y +E A V MS V R V ++
Sbjct: 209 DEAAGFVKKME-NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTL 267
Query: 128 LLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L+ K+D + + M E + PD +Y +L+ G + +++DA ++ DEML+
Sbjct: 268 LIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 327
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+ L +LI G C + EA + M+ +N+KPD+ + +L+ G C G S
Sbjct: 328 GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVD-WNLKPDSYSYNTLLDGYCREGHTSE 386
Query: 246 ALGFKEEMVRNKIE 259
A ++M++ IE
Sbjct: 387 AFNLCDKMLQEGIE 400
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ + +++ + + ++ A +M + V+ + ++++L+N ++ G ++
Sbjct: 188 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 247
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYG 200
+ + M EK VS + +Y +L+ G ++++A KV M + L P +G LI G
Sbjct: 248 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 307
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C ++D+A++L ++M+R+ +K + + SLI G C GE+ A G MV ++
Sbjct: 308 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 366
Query: 261 DA 262
D+
Sbjct: 367 DS 368
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+L Y+ ++ L R FD+ QI H L V P+E+ + ++ + E A ++
Sbjct: 403 VLTYNTLLKGLCRVGAFDDALQIWH-LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 461
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKI-------DRMTDL------------------- 144
++ + ++ +FNT+++ + GK+ D+M DL
Sbjct: 462 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 521
Query: 145 ------FQI---MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
F++ ME+ +SP YN L+ G SRRL + + EM R L P +VT+
Sbjct: 522 SNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 581
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
G LI G C E +D+A +M + + + ++++ GL +G + A ++MV
Sbjct: 582 GALIDGWCKEGMLDKAFSSYFEMTE-NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 640
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 5/206 (2%)
Query: 28 LFKNPNPNPNNTEAQPL--KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
LFK N +T + + + F + + ++ +I+ L + E ++I ++K D P
Sbjct: 448 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSP 506
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ I + +I Y +A + A +V M + +++ +N+L++ + ++ +TDL
Sbjct: 507 DGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLL 566
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + ++P+ +Y L+ G L+ A+ + EM + L ++ T++ GL
Sbjct: 567 TEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRL 626
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVF 230
R+DEA L + M+ + PD + F
Sbjct: 627 GRIDEANLLMQKMVD-HGFFPDHECF 651
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L VP+ +C +I Y A ++ A ++
Sbjct: 679 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 737
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM + + ++N L+N + +DR LF ++ +K + P+ +YN L+ G
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 797
Query: 169 SRRLEDAWKVFDEMLKRRLQPTL 191
++ A+K+ D+M++ + P++
Sbjct: 798 IGNMDAAFKLKDKMIEEGISPSI 820
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 106/241 (43%), Gaps = 21/241 (8%)
Query: 32 PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91
P P L P YN L ++ RA DEV ++ L P +F
Sbjct: 34 PASPPAGAVPAALTPTAYNAL-----MSAYSRAGRHDEVLRLFRSLPFS----PTAPLFT 84
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
+IS + AL F ++S + T +F LL ++ F M
Sbjct: 85 TLISSLAASGSKSAALDAFSLLAS-GLGPTTSAFTALLKSIDAAPSESVYRAFFGTMAAM 143
Query: 152 -VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+PDA +YN L+ S+RL++AW V D ML+ + PT+ ++ +++G C + RV EA
Sbjct: 144 GCAPDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEA 203
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL---------SLALGFKEEMVRNKIEMD 261
+L + M++V PD ++ LI+GLC VGE S A G+ V I M
Sbjct: 204 ERLVDTMIQV-GCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMS 262
Query: 262 A 262
A
Sbjct: 263 A 263
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 5/210 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y+ +I L ++ DE +L + + + P + ++ Y + R+LE A ++ D
Sbjct: 152 YNCLIWMLCDSQRLDEAWGVLDSMLEEG-ICPTVRSYTAILHGYCKQGRVLE-AERLVDT 209
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M V S++ L+ + G+ ++ + E K +P+A +YNI M
Sbjct: 210 MIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGF 269
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L++A++ D ML R + T+ T L LC + EA+ L E + N D +
Sbjct: 270 LDEAFRQVDVMLSRGVSMTIETVNILFDCLCRDSMFSEAVSLLEYSEEL-NWNVDVFCYN 328
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+L+ LC G+ + L ++V+ I D
Sbjct: 329 TLMSRLCDAGDFARVLKLLVDLVKKGIGPD 358
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFXVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 72/272 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ +I GRA L HA
Sbjct: 12 HELVYNVLHSAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKSFNTL---------- 128
+++F +M V+RT+KS+N L
Sbjct: 72 PKKGLEWDEDMWVMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFXVILRRGRY 131
Query: 129 ------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYNIL 162
N ML+ GK++ F+ M+ + +SPD +YN +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G +++E+A K F EM R ++PT+VT+ TLI G +VD+AL+L E+ M+ +
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KP+A +++L+ GLC +++ A +EM+
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMTEARSILKEMM 282
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEARSILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCNSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKAGQYDQAVKLLDKLIEKDI 357
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEM 308
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI GLC G A EM+ ++
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRD 416
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G +DE +LK M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 205 -ASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 239
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
VF+ ++ + ++ +V SFNTL+N + G +D L M V PD +Y++L++G
Sbjct: 158 VFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLC 217
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+++DA +FDEML + L P VTF TLI G C RVD A+++ + M+ ++ PD
Sbjct: 218 KESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLS-QSLSPDL 276
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI GLC G+L A +EM ++ D
Sbjct: 277 ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 310
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ + ++ D +VP + F +I+ + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDDANGLFDEML-DKGLVPNGVTFTTLIAGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
R ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC LE A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 374 SV-GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 553
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 106/195 (54%), Gaps = 7/195 (3%)
Query: 67 FDEVQQILHQLKH-DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+ EV I Q++ D R P+ + + +I+ YG+AR E AL VF+EM V+ T K++
Sbjct: 296 YKEVSNIYDQMQRADLR--PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAY 353
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LL+A G +++ +F+ M +KY+ PD CSY ++ V + +E A K F ++
Sbjct: 354 NILLDAFSISGMVEQARIVFKSMRRDKYM-PDLCSYTTMLSAYVNAPDMEGAEKFFKRLI 412
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +P +VT+GTLI G +++ ++ E+M+ +K + + +++ G+
Sbjct: 413 QDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLG-RGIKANQTILTTIMDAHGKNGDF 471
Query: 244 SLALGFKEEMVRNKI 258
A+ + +EM N +
Sbjct: 472 DSAVNWFKEMALNGL 486
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ + F E +++ +L +D + + P++ +F +I Y ++ E A Q F
Sbjct: 213 YQIILKTFVQGNKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFA 272
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
M+ +++ ++N+L++ ++ + D Q+ + PD SY +L++ +RR
Sbjct: 273 LMAERGIKKATVTYNSLMSFETNYKEVSNIYD--QMQRADLRPDVVSYALLINAYGKARR 330
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT + L+ + V++A ++ MR PD +
Sbjct: 331 EEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQA-RIVFKSMRRDKYMPDLCSYT 389
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++ ++ A F + ++++ E
Sbjct: 390 TMLSAYVNAPDMEGAEKFFKRLIQDGFE 417
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K ++ V +IL L+ ++ F +I+ YG+ A +V M+ V S
Sbjct: 118 KKWNLVAEILEWLRAQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVS 177
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
L+ A G+ + +F+ M+ + P A +Y I++ V + ++A +VFD++L
Sbjct: 178 QTALMEAYGKGGRYNNAEAIFRRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLL 237
Query: 184 ---KRRLQPTLVTFGTLIY 199
K L+P F +IY
Sbjct: 238 NDEKSPLRPDQKMFNMMIY 256
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 33 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 91
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 92 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLSEGIEPTRHTFNVMIWG 151
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 152 FFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 210
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 211 TVVTYTTLIKGYVSVDQVDDALRLVEEM 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 173 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 232
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 233 RLVEEMKGFGTKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 292
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 293 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGLLIENFCKAGQYDKAVKLLDKLIEKDI 349
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEM 308
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI GLC G A EM+ ++
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 106/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G +DE +LK M+
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 205 -ASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 239
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 2/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N++ Y L+I + DE +++L ++ + +VP+E + +I Y R ++
Sbjct: 290 KGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKID 349
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+++ DEM ++ + N+L+N G+I + M + + PD+ SYN L+
Sbjct: 350 DAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLL 409
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +A+ + D+ML+ ++PT++T+ TL+ GLC D+AL++ MM+ V
Sbjct: 410 DGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMK-RGV 468
Query: 224 KPDAQVFASLIKGL 237
PD +++L+ GL
Sbjct: 469 APDEVGYSTLLDGL 482
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L + D+ ++ L VP+ +C +I Y A ++ A ++
Sbjct: 713 NNIVYNIAIAGLCKTGKVDDARRFFSMLSLKG-FVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM + + ++N L+N + +DR LF ++ +K + P+ +YN L+ G
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A+K+ D+M++ + P++VT+ LI GLC ++ ++KL M++ V
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKA-GVDSKLI 890
Query: 229 VFASLIKGLCAVGEL 243
+ +L++G GE+
Sbjct: 891 EYCTLVQGYIRSGEM 905
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 123/297 (41%), Gaps = 63/297 (21%)
Query: 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
A L L+ +P +L F+ + N FR N+ Y ++ L R +M+DE +
Sbjct: 73 AVLRNLRLNPTASLGFFQFVSKQQN---------FRPNVKSYCKLVHILSRGRMYDETRA 123
Query: 73 ILHQL------KHDTRVVPEEII------------FCNVISFYGRARLLEHALQVFDEMS 114
L+QL K V+ +E++ F ++ Y L ++AL VFD M
Sbjct: 124 YLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMG 183
Query: 115 SFNVQRTVKSFNTLLN-----------------------------------AMLTCGKID 139
+++S N+LLN A GK+D
Sbjct: 184 KCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVD 243
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ ME V P+ +Y+ L++G V +E A V M ++ + +VT+ LI
Sbjct: 244 EAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLI 303
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
G C + ++DEA K+ M + PD + + LI G C G++ A+ +EM+R
Sbjct: 304 KGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLR 360
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 2/181 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P+ + ++ Y R A + D+M ++ TV ++NTLL + G D
Sbjct: 395 DWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFD 454
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ +M ++ V+PD Y+ L+ G E A ++ ++L R + +TF T+I
Sbjct: 455 DALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMI 514
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
GLC ++ EA ++ D M+ PD + +LI G C + A K M R I
Sbjct: 515 SGLCKMGKMVEAEEI-FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPI 573
Query: 259 E 259
Sbjct: 574 S 574
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N + + GK+D F ++ K PD +Y L+HG + +++A+++ DEML
Sbjct: 717 YNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML 776
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R L P +VT+ LI GLC VD A +L + + + P+ + +LI G C +G +
Sbjct: 777 RRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ-KGLFPNVVTYNTLIDGYCKIGNM 835
Query: 244 SLALGFKEEMVRNKIE 259
A K++M+ I
Sbjct: 836 DAAFKLKDKMIEEGIS 851
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 3/179 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + ++I+ Y +E A V MS V R V ++ L+ K+D
Sbjct: 257 VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAE 316
Query: 143 DLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+ + M E + PD +Y +L+ G + +++DA ++ DEML+ L+ L +LI G
Sbjct: 317 KVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLING 376
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
C + EA + M+ +N+KPD+ + +L+ G C G S A ++M++ IE
Sbjct: 377 YCKRGEIHEAEGVITRMVD-WNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIE 434
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 96/182 (52%), Gaps = 3/182 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ + +++ + + ++ A +M + V+ + ++++L+N ++ G ++
Sbjct: 222 IVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAK 281
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYG 200
+ + M EK VS + +Y +L+ G ++++A KV M + L P +G LI G
Sbjct: 282 GVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C ++D+A++L ++M+R+ +K + + SLI G C GE+ A G MV ++
Sbjct: 342 YCRTGKIDDAVRLLDEMLRL-GLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKP 400
Query: 261 DA 262
D+
Sbjct: 401 DS 402
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 107/240 (44%), Gaps = 38/240 (15%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+L Y+ ++ L R FD+ QI H L V P+E+ + ++ + E A ++
Sbjct: 437 VLTYNTLLKGLCRVGAFDDALQIWH-LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 495
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKI-------DRMTDL------------------- 144
++ + ++ +FNT+++ + GK+ D+M DL
Sbjct: 496 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 555
Query: 145 ------FQI---MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
F++ ME+ +SP YN L+ G SRRL + + EM R L P +VT+
Sbjct: 556 SNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTY 615
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
G LI G C E +D+A +M + + + ++++ GL +G + A ++MV
Sbjct: 616 GALIDGWCKEGMLDKAFSSYFEMTE-NGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 99/206 (48%), Gaps = 5/206 (2%)
Query: 28 LFKNPNPNPNNTEAQPL--KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
LFK N +T + + + F + + ++ +I+ L + E ++I ++K D P
Sbjct: 482 LFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMK-DLGCSP 540
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ I + +I Y +A + A +V M + +++ +N+L++ + ++ +TDL
Sbjct: 541 DGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLL 600
Query: 146 QIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M + ++P+ +Y L+ G L+ A+ + EM + L ++ T++ GL
Sbjct: 601 TEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRL 660
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVF 230
R+DEA L + M+ + PD + F
Sbjct: 661 GRIDEANLLMQKMVD-HGFFPDHECF 685
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 41/249 (16%)
Query: 35 NPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94
N N +KP NL+ Y II L + + D+ +++ ++K + P+ + + ++I
Sbjct: 225 NGNGGFGVTIKP---NLVCYCTIIDSLCKDGLIDKGKELFLEMK-GRGISPDVVAYSSII 280
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK----------------- 137
E A +F+EM V V +FN L++A+ GK
Sbjct: 281 HGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGES 340
Query: 138 ------------------IDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKV 178
ID DLF ME K + DA SYN+L++G S R+ +A K+
Sbjct: 341 PDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKL 400
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ EM+ + + PT++T+ TL+ GL E +V +A L + M+V+++ P++ + L+ GLC
Sbjct: 401 YREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGE-MKVHDLTPESCTYNILLDGLC 459
Query: 239 AVGELSLAL 247
LS A+
Sbjct: 460 KNNHLSEAM 468
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNI 161
A VF+ + + SFNTLL A+ KI R D+ + ++ ++PD + NI
Sbjct: 76 AFSVFNHLIDMQPTPPISSFNTLLGAV---AKIKRYFDVISLYKRMSLIGLAPDFITLNI 132
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ +++ V EML+R P VTF +L+ GLCL R+ EA L M+R+
Sbjct: 133 LINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRM- 191
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+P+ + +L+ GLC G LA+ EEM+
Sbjct: 192 GYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNG 226
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I L +A +E +L +L P+ + +I + ++ A +
Sbjct: 307 NVVTFNVLIDALCKAGKMEEANHLL-KLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F M S ++ S+N L+N G++ L+ ++M K + P +YN L+ G
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ DAW +F EM L P T+ L+ GLC + EA++L + ++ +P Q
Sbjct: 426 EGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFH-YLENHDFQPSIQ 484
Query: 229 VFASLIKGLCAVGELSLA 246
+F LI GLC ++ +A
Sbjct: 485 IFNCLIDGLCKARKIEIA 502
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + +C +I + L++ ++F EM + V +++++++ M G+ +
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++++ V P+ ++N+L+ + ++E+A + M++R P T+ TLI G
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGF 353
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
CLE R+D+A L M ++ DA + LI G C G + A EM+ +I
Sbjct: 354 CLEGRIDDARDLFVSM-ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEI 409
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY- 151
+I+ Y ++ + A +++ EM + TV ++NTLL + GK+ +LF M+ +
Sbjct: 384 LINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHD 443
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
++P++C+YNIL+ G + L +A ++F + QP++ F LI GLC +++ A
Sbjct: 444 LTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAR 503
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL----SLALGFKEE 252
+L + ++P+ + +I GLC G+L L LG +E+
Sbjct: 504 ELFNRLSH-EGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEK 547
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 8/164 (4%)
Query: 106 ALQVFDEMSSFN------VQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
A+++ +EM + N ++ + + T+++++ G ID+ +LF ++ + +SPD +
Sbjct: 216 AVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVA 275
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ ++HG + R E A +F+EM+ + P +VTF LI LC +++EA L + M+
Sbjct: 276 YSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMI 335
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD + +LI G C G + A M IE DA
Sbjct: 336 Q-RGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDA 378
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 97/186 (52%), Gaps = 5/186 (2%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ ++T L R + + ++K HD + PE + ++ + L A+++
Sbjct: 413 VITYNTLLTGLFREGKVRDAWNLFGEMKVHD--LTPESCTYNILLDGLCKNNHLSEAMEL 470
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F + + + Q +++ FN L++ + KI+ +LF ++ + + P+ +Y +++HG
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +LE+A +F M ++ P LVTF TL+ G C + + ++L ++M + PDA
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAE-KDFSPDAS 589
Query: 229 VFASLI 234
+ ++
Sbjct: 590 TISIVV 595
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 41/194 (21%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHG 165
+ ++ MS + + N L+N K+D + L +++ + SP+ ++ L+ G
Sbjct: 112 ISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKG 171
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-------- 217
+ R+ +A + +M++ +P +VT+GTL+ GLC+ A+KL E+M
Sbjct: 172 LCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFG 231
Query: 218 --------------------------------MRVYNVKPDAQVFASLIKGLCAVGELSL 245
M+ + PD ++S+I G+C G
Sbjct: 232 VTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291
Query: 246 ALGFKEEMVRNKIE 259
A G EMV +
Sbjct: 292 AKGLFNEMVDEGVH 305
>gi|255548031|ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545552|gb|EEF47056.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 126/259 (48%), Gaps = 18/259 (6%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRAKM 66
+P L+ ++R QK+P +AL++FK EA+ P +R+N Y +I LG +
Sbjct: 10 TPTHLSQIIRNQKNPLIALRIFK---------EAKDKYPNYRHNGPVYATMIGILGSSGR 60
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
E++++L Q++ D+ ++ IF N I Y R LL A+ +F + FN +SFN
Sbjct: 61 ITEMKEVLDQMREDS-CECKDSIFANAIKTYARVGLLNEAISLFKNIPQFNCVNWTESFN 119
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
TLL M+ K++ LF + Y V S N+LM R + A +VF EM
Sbjct: 120 TLLQIMVKESKLEAAHRLF-LESSYGWEVKSRVRSLNLLMDVLCQHNRSDVALQVFQEMN 178
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAV 240
+ P ++ ++ GLC + R++EA L M + K + ++ + LC +
Sbjct: 179 YQGCYPDRDSYRIVMMGLCKDGRLNEATHLLYSMFWRISQKGSGEDIVIYRIFLDALCDI 238
Query: 241 GELSLALGFKEEMVRNKIE 259
G + AL +++R ++
Sbjct: 239 GMVEQALEVLGKILRKGLK 257
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 5/165 (3%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI--MEK 150
+ FY +L A +V DE + ++ ++ + A+ GK+ ++ ++ +E
Sbjct: 303 AVDFYAEGKL-SQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEG 361
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDE 209
P+ YNIL+ G +R A K M K+ T+ L++GLC + E
Sbjct: 362 NCVPNVRLYNILLKGLCDARNSATAVKYLKRMAKQTGCVANKETYCILVHGLCQDGGFIE 421
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
A ++ E+M+ + + P F LI+GLC++G A + EEM+
Sbjct: 422 ASRILEEML-IKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEEMI 465
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
++S+ N +++ L+N L G I P SY + +
Sbjct: 267 DLSNCNSDGNIETTKHLINEALIRGAI---------------PSLSSYTAMAVDFYAEGK 311
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L A KV DE R +P+L+T+ + LC E +V EA+ + E M N P+ +++
Sbjct: 312 LSQADKVLDETQDRGFRPSLLTYEAKVAALCKEGKVHEAINVLEVEMVEGNCVPNVRLYN 371
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
L+KGLC + A+ + + M +
Sbjct: 372 ILLKGLCDARNSATAVKYLKRMAK 395
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 103 LEHALQVFD-EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC---- 157
+ A+ V + EM N V+ +N LL + C + T + + +++ C
Sbjct: 347 VHEAINVLEVEMVEGNCVPNVRLYNILLKGL--CDARNSATAV-KYLKRMAKQTGCVANK 403
Query: 158 -SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y IL+HG +A ++ +EML + P + TF LI GLC R EA E+
Sbjct: 404 ETYCILVHGLCQDGGFIEASRILEEMLIKSYWPPVDTFNMLIRGLCSIGRQYEATMWLEE 463
Query: 217 MMRVYNVKPDAQVFASLIKGLCA 239
M+ + + P+ V+ SL+ LC+
Sbjct: 464 MISL-DEAPELSVWNSLVTCLCS 485
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
LH ++ T L +AK E +++ Q++ P+ I + +I +A + AL+V D
Sbjct: 227 LHTAMVRTLL-KAKRVKEAREVFGQMEK-CGFPPDAIAYNTMIDGLAKAGHAQEALKVLD 284
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
M + T ++ L+N++ G ++R +LF++M P++ Y L+HG S
Sbjct: 285 NMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+++A +FDEM++ +P ++T +I GLC ++A K E+MMR KP+ +
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR-GGCKPNVVTY 403
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
++I+GL +G ++ A + M+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMI 427
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 6/205 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVV---PEEIIFCNVISFYGRARLLEHALQVF 110
Y+++I L R++ + V++ L HD +V P+ + + + + ++ A+++
Sbjct: 544 YNILINGLCRSRE-NRVERAF-ALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKML 601
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
+E SS V ++ L + G++DR LFQ M + +PDA +Y +++G +
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKG 661
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++LEDA K FDEM+ + +PT+ T+ L+ LC VDEA E M+ + +
Sbjct: 662 KKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMI 721
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C ++ AL E+M+
Sbjct: 722 YDALIHGFCKALKVDAALKLFEDMI 746
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + + +++ Y + T L D + ++ P+ +C +I+ +
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA-PDAAAYCCIINGLIK 660
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDAC 157
+ LE A + FDEM + TV ++ L+ A+ G +D F+ M +
Sbjct: 661 GKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVM 720
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y+ L+HG + +++ A K+F++M+ R PT VT +L GL + ++A +L ++M
Sbjct: 721 IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM 780
Query: 218 MRVYNVKPDAQVFASLIKGL 237
P A F +++ GL
Sbjct: 781 A-AGGSPPHAATFTAILDGL 799
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 47 FRYNLLHYDLII---TKLGRAK----MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
FR N + Y +I K GR K +FDE+ + ++ P+ I +I +
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR--------PDVITHTVMIDGLCK 377
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PD 155
+ E A + F+EM + V ++ T++ + KI R+ + F+IM+ ++ PD
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL---SKIGRVANAFRIMKGMIAHGCFPD 434
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+ +Y L+ G RL++A ++ DE+ K P L + +L+ GLC V+ L
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF 494
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + D + S+I GLC G L A + MV + DA
Sbjct: 495 EQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 50 NLLHYDLII---TKLGR-AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
N++ Y II +K+GR A F ++ ++ P+ + + ++ + + L+
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAH-----GCFPDSVTYICLLDGFCKLGRLDE 453
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQ---IMEKYVSPDACSYNI 161
A Q+ DE+ + ++ +++L+ + G ++ + DLF+ + + P C I
Sbjct: 454 AAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSII 513
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC--LELRVDEALKLKEDMMR 219
+ G + RL++A ++F M+ +P T+ LI GLC E RV+ A L D+
Sbjct: 514 V--GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM 571
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
V + PDA + L GLC +GE+ A+ EE
Sbjct: 572 VGYL-PDAVTYTPLCIGLCKIGEVDRAVKMLEE 603
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 11/208 (5%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
KLGR DE Q+L +L + P ++ +++ +E+ L E S +
Sbjct: 447 KLGR---LDEAAQLLDELDKCSSS-PNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAE 502
Query: 120 RTVKSFN-TLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR--RLEDA 175
+++ + G++D +FQ M + PDA +YNIL++G SR R+E A
Sbjct: 503 NLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERA 562
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFASLI 234
+ + ++ P VT+ L GLC VD A+K L+E R +N D + +L
Sbjct: 563 FALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNA--DVVAYTALC 620
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMDA 262
GLC G++ A+ +EMVR DA
Sbjct: 621 TGLCYQGQVDRAVSLFQEMVRQGGAPDA 648
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 17/246 (6%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+A++LR K A+ F+ F++++ Y+ ++ L K + +
Sbjct: 89 VAAVLRSLKVTGTAISFFRWAGEQAG---------FQHDVFTYNCLMNLLVAEKNYSQCY 139
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
I H+ + P F +I + R R + A+ F+ M + + +F L++
Sbjct: 140 AI-HEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC 198
Query: 132 MLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ G ++ ++F M +V PD + ++ + ++R+++A +VF +M K P
Sbjct: 199 LCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPP 258
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ + T+I GL EALK+ ++M+ V P + L+ LC G L A
Sbjct: 259 DAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV-PTEVTYGILVNSLCKAGTLERA--- 314
Query: 250 KEEMVR 255
EE+ R
Sbjct: 315 -EELFR 319
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF---DEMSSFNVQRTVK 123
D +H +++ V +++ +V + ++ A+ F E + F Q V
Sbjct: 63 LDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGF--QHDVF 120
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++N L+N ++ + + + M K ++P+ S+NIL+ +RR +DA F+ M
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++R +P L TF L+ LC ++A ++ +MM + V PD + ++++ L
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 279 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 327
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A +++D+M ++ + ++N+L+N ++D+ +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 448 DGDCDNAQKVFKQMVS-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 107/190 (56%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K++D+M+KR + P + T+ +L+ G C+ R+D+A ++ E M+ + PD
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS-KDCFPDVV 401
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 402 TYNTLIKGFC 411
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 518 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 552
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + K FD V + +++ +V + +I+ + R + AL +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M + ++ + ++LLN +I D + + Q++E PD ++ L+HG +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A + D M++R QP LVT+G ++ GLC D AL L + M ++ D
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL-NKMEAAKIEADVV 261
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+F ++I LC + AL +EM
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEM 286
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D LAL L N EA ++ +++ ++ II L + + D+ + +++
Sbjct: 238 RGDTDLALNLL-------NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ P + + ++IS YGR A Q+ +M + + +FN L++A +
Sbjct: 288 TKG-IRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 136 GKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK L+ M ++ + PD +YN L++G + RL+ A ++F+ M+ + P +VT+
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI G C RV++ +L +M + D + +LI+GL G+ A ++MV
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 255 RNKIEMD 261
+ + D
Sbjct: 463 SDGVPPD 469
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + ++M + + ++N L+N +I
Sbjct: 79 SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 138
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + + L++G +R+ DA + D+M++ +P +TF TLI+
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +P+ + ++ GLC G+ LAL +M KIE
Sbjct: 199 GLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257
Query: 260 MD 261
D
Sbjct: 258 AD 259
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLI 582
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
S + Y ++ + +L+DA +F M+K R P++V F L+ + + D +
Sbjct: 47 SSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVIS 106
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
L E M R+ + + LI C ++SLAL +M++
Sbjct: 107 LGEKMQRL-EIVHGLYTYNILINCFCRRSQISLALALLGKMMK 148
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV I Q++ + P+ + + +I YG+AR E AL VF+EM V+ T KS+N
Sbjct: 296 YKEVSSIYDQMQR-AGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 354
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +D +F+ M ++ V PD CSY ++ V + + A K F +
Sbjct: 355 ILLDAFAISGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDD 414
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+P +V +GTL+ G V++ +++ E MR+ V+P+ ++ +++ +
Sbjct: 415 GLKPNVVVYGTLMKGYSKLNNVEKVMRVYE-RMRIQGVEPNQTIYTTIMDAHGRNSDFGN 473
Query: 246 ALGFKEEM 253
A+ + +EM
Sbjct: 474 AVIWFKEM 481
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 97/198 (48%), Gaps = 5/198 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ L + E + I L ++ R P++ +F +I Y +A A ++F
Sbjct: 213 YQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFA 272
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+MS + + +FN+L++ ++ + D Q+ + PD SY++L+ +RR
Sbjct: 273 QMSERKIPLSTVTFNSLMSFETDYKEVSSIYD--QMQRAGMKPDVVSYSLLIKAYGKARR 330
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT ++ L+ + VDEA + + MR + V+PD +
Sbjct: 331 EEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFK-AMRRHRVEPDLCSYT 389
Query: 232 SLIKGLCAVGELSLALGF 249
+++ +++ A F
Sbjct: 390 TMVLAYVNASDMNGAEKF 407
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 95/212 (44%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + +++T G+ F +++L + + P I ++ YGR + A
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYM-NKKGYQPSVISQTGLMEAYGRGKQYRKA 194
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVS--PDACSYNIL 162
VF M + + + ++ +L +++ K +F+ + EK S PD ++++
Sbjct: 195 EAVFRRMQTSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMM 254
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + A K+F +M +R++ + VTF +L + E E + + M R
Sbjct: 255 IYMYKKAGDYAQARKLFAQMSERKIPLSTVTFNSL---MSFETDYKEVSSIYDQMQRA-G 310
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KPD ++ LIK AL EEM+
Sbjct: 311 MKPDVVSYSLLIKAYGKARREEEALAVFEEML 342
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ RA D ++++ ++ + P + F ++++ +A +E A +V
Sbjct: 186 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 245
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEM + V S+NTLL+ G + +F ++ ++ + PD ++ L+H
Sbjct: 246 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 305
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A + +M +R L+ VTF LI G C + +D+AL E+ MR ++P
Sbjct: 306 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE-MRKCGIQPSVV 364
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C +G + LA EM +++ D
Sbjct: 365 CYNALINGYCKLGRMDLARELIREMEAKRVKPD 397
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N + + +I + D+ + +++ + P + + +I+ Y + ++
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR-KCGIQPSVVCYNALINGYCKLGRMD 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++ EM + V+ V +++T+++ G +D L Q +++K V PDA +Y+ L+
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +RL DA ++F+ ML+ +QP T+ TLI G C E V++AL L ++M+R V
Sbjct: 441 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR-KGV 499
Query: 224 KPDAQVFASLIKGL 237
PD ++ LI GL
Sbjct: 500 LPDVVTYSVLINGL 513
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHALQVFD 111
Y+ ++ L A + + + L+H V P + N++ + R RL E A+ V
Sbjct: 121 YNAVLLALSDASLPSARRFLSSMLRHG--VAPNVYTY-NILVRALCARGRL-EEAVGVVG 176
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVS 169
+M ++NTL+ A G++D + +M E P+ ++N +++G +
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+E A KVFDEM++ L P +V++ TL+ G C + E+L + +M + + PD
Sbjct: 237 GRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQ-RGLVPDVVT 295
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLI C G L A+ +M + M+
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 21/233 (9%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ +KP +++ Y II+ + D Q L+Q V+P+ I + ++I
Sbjct: 390 EAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCE 445
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ L A ++F+ M VQ ++ TL++ G +++ L +++ K V PD +
Sbjct: 446 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 505
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------GLCL 203
Y++L++G S R ++A ++ ++ P + + L+ G C+
Sbjct: 506 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 565
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + EA K+ + M+ N K D V++ LI G C G + AL F ++M+R+
Sbjct: 566 KGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 617
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+V ++N +L A+ L ++ V+P+ +YNIL+ RLE+A V
Sbjct: 117 SVPAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVG 176
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M P VT+ TL+ C +D A ++ M N KP+ F S++ GLC
Sbjct: 177 DMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKA 236
Query: 241 GELSLALGFKEEMVRNKIEMD 261
G + A +EMVR + D
Sbjct: 237 GRMEGARKVFDEMVREGLAPD 257
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ P E+++ +I +AR ++ AL++ +M +F T+ ++N L++ + G +
Sbjct: 205 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTI-TYNILIDGLCKSGDVAAA 263
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F +++E PD +YNIL+ G + + A VFD+M R P +VT+GTLI G
Sbjct: 264 RAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISG 323
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC ++ +A L M+ PD+ V++SL+ GLC G+L +EM R+ +
Sbjct: 324 LCKRRQLTKA-SLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 380
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L + +E +L ++ D P+ + + ++I G+ + A ++F EM
Sbjct: 72 YNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEM 130
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+S + + L+ +L GKI + + +++ M + PD + + ++ G + R+
Sbjct: 131 ASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRI 190
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++F M R L P V + LI+GLC ++D AL++ M + + PD +
Sbjct: 191 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNI 249
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI GLC G+++ A F +EM+ + D
Sbjct: 250 LIDGLCKSGDVAAARAFFDEMLEAGCKPD 278
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 14/175 (8%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +IS + +A + A VFD+MSS V ++ TL++ + ++ + +
Sbjct: 277 PDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLY 336
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+Q M E+ PD+ Y+ L+ G S +LE +FDEM +R T LI+ LC
Sbjct: 337 YQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCK 395
Query: 204 ELRVDEALKL-----KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
RVDEA+ L KE M P + S+I L G+++ +EM
Sbjct: 396 ANRVDEAVSLFNAIRKEGM-------PHPYAYNSIISALIKSGKVNEGQAVYQEM 443
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDAC 157
+A +L A + E ++ + ++ T+++ + KI L + I +P
Sbjct: 11 KAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIA 70
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN L++G RLE+A + +++ P +VT+ +LI GL + R EA KL ++M
Sbjct: 71 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEM 130
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGEL 243
+ D + +LI+GL G++
Sbjct: 131 AS-RGLALDTVCYTALIRGLLQAGKI 155
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+ L + + + +K + P+ ++ +++ ++ LE +
Sbjct: 313 NVVTYGTLISGLCKRRQLTKASLYYQHMK-ERGCPPDSFVYSSLVDGLCKSGKLEGGCML 371
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
FDEM V + ++ L+ + ++D LF + K P +YN ++ + S
Sbjct: 372 FDEMERSGVANS-QTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKS 430
Query: 170 RRLEDAWKVFDEM 182
++ + V+ EM
Sbjct: 431 GKVNEGQAVYQEM 443
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
LH ++ T L +AK E +++ Q++ P+ I + +I +A + AL+V D
Sbjct: 227 LHTAMVRTLL-KAKRVKEAREVFGQMEK-CGFPPDAIAYNTMIDGLAKAGHAQEALKVLD 284
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
M + T ++ L+N++ G ++R +LF++M P++ Y L+HG S
Sbjct: 285 NMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSG 344
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+++A +FDEM++ +P ++T +I GLC ++A K E+MMR KP+ +
Sbjct: 345 RMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMR-GGCKPNVVTY 403
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
++I+GL +G ++ A + M+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMI 427
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 104/204 (50%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAK--MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y+++I L R++ + +LH L+ +P+ + + + + ++ A+++ +
Sbjct: 544 YNILINGLCRSRENRVERAFALLHDLEK-VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLE 602
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
E SS V ++ L + G++DR LFQ M + +PDA +Y +++G + +
Sbjct: 603 EASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVK 662
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+LEDA K FDEM+ + +PT+ T+ L+ LC VDEA E M+ + ++
Sbjct: 663 KLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIY 722
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
+LI G C ++ AL E+M+
Sbjct: 723 DALIHGFCKALKVDAALKLFEDMI 746
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 106/213 (49%), Gaps = 18/213 (8%)
Query: 50 NLLHYDLII---TKLGR-AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
N++ Y II +K+GR A F ++ ++ P+ + + ++ + + L+
Sbjct: 399 NVVTYTTIIQGLSKIGRVANAFRIMKGMIAH-----GCFPDSVTYICLLDGFCKLGRLDE 453
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQ---IMEKYVSPDACSYNI 161
A Q+ DE+ + ++ +++L+N + G +++ + DLF+ + + P C I
Sbjct: 454 AAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSII 513
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC--LELRVDEALKLKEDMMR 219
+ G + RL++A ++F M+ +P T+ LI GLC E RV+ A L D+ +
Sbjct: 514 V--GLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEK 571
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
V + PDA + L GLC +GE+ A+ EE
Sbjct: 572 VGYL-PDAVTYTPLCIGLCKIGEVDRAVKMLEE 603
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E + + +++ Y + T L D + ++ P+ +C +I+ +
Sbjct: 602 EEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA-PDAAAYCCIINGLIK 660
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDAC 157
+ LE A + FDEM + TV ++ L+ A+ G +D F+ M +
Sbjct: 661 VKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVM 720
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y+ L+HG + +++ A K+F++M+ R PT VT +L GL + ++A +L ++M
Sbjct: 721 IYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEM 780
Query: 218 MRVYNVKPDAQVFASLIKGL 237
P A F +++ GL
Sbjct: 781 A-AGGSPPHAATFTAILDGL 799
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 22/227 (9%)
Query: 47 FRYNLLHYDLII---TKLGRAK----MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
FR N + Y +I K GR K +FDE+ + ++ P+ I +I +
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR--------PDVITHTVMIDGLCK 377
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PD 155
+ E A + F+EM + V ++ T++ + KI R+ + F+IM+ ++ PD
Sbjct: 378 SGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL---SKIGRVANAFRIMKGMIAHGCFPD 434
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+ +Y L+ G RL++A ++ DE+ K P L + +L+ GLC V++ L
Sbjct: 435 SVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLF 494
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + D + S+I GLC G L A + MV + DA
Sbjct: 495 EQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDA 541
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 17/246 (6%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+A++LR K A+ F+ F++++ Y+ ++ L K + +
Sbjct: 89 VAAVLRSLKVTGTAISFFRWAGEQAG---------FQHDVFTYNCLMNLLVAEKNYSQCY 139
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
I H+ + P F +I + R R + A+ F+ M + + +F L++
Sbjct: 140 AI-HEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC 198
Query: 132 MLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ G ++ ++F M +V PD + ++ + ++R+++A +VF +M K P
Sbjct: 199 LCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPP 258
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ + T+I GL EALK+ ++M+ V P + L+ LC G L A
Sbjct: 259 DAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACV-PTEVTYGILVNSLCKAGTLERA--- 314
Query: 250 KEEMVR 255
EE+ R
Sbjct: 315 -EELFR 319
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF---DEMSSFNVQRTVK 123
D +H +++ V +++ +V + ++ A+ F E + F Q V
Sbjct: 63 LDGSSWSVHNIRNVLGPVHGQVLGSHVAAVLRSLKVTGTAISFFRWAGEQAGF--QHDVF 120
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++N L+N ++ + + + M K ++P+ S+NIL+ +RR +DA F+ M
Sbjct: 121 TYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIM 180
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++R +P L TF L+ LC ++A ++ +MM + V PD + ++++ L
Sbjct: 181 KRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 111/212 (52%), Gaps = 2/212 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I L + FDE +I ++ + R + + ++I A ++ A++V
Sbjct: 256 NVVTYNIMINGLCKCGRFDESLEIWERMTKNERE-KDMFTYSSLIHGLCEAGNIDGAVRV 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ E+ ++ + N +LN GKI +L+ +M K SYNIL+ G +
Sbjct: 315 YKEIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFEN 374
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++E+A +++ + K+ +P T+G LI+GLC R+++ALK+ ++ K DA
Sbjct: 375 GKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPG-KLDAYA 433
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++S++ GLC G + A+ +M + ++D
Sbjct: 434 YSSMVDGLCKEGRMDEAISIVNQMDKRGYKLD 465
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 52/285 (18%)
Query: 4 AKPTSPFRLASLLRLQKDPKL--ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
+P S + L K+ +L AL++FK P +A Y ++ L
Sbjct: 392 CRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYA----------YSSMVDGL 441
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQR 120
+ DE I++Q+ D R + CN +I+ + RA LE A+ F EM
Sbjct: 442 CKEGRMDEAISIVNQM--DKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSP 499
Query: 121 TVKSFNTLLNA-------------------------MLTCG----------KIDRMTDLF 145
T+ S+NTL+ M+TC KI+ +L+
Sbjct: 500 TIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLW 559
Query: 146 Q-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
Q ++K PD YNILMHG +LEDA +++ M + P LVT TL+ GL +
Sbjct: 560 QQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGL-YK 618
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+R E D + + PD + IKGLC+ +S A+ F
Sbjct: 619 VRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEF 663
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 50/281 (17%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-AKMFDEVQQILHQL 77
+K+P AL LF++ + N K ++ H+ I+ +L +++ V +I+ +
Sbjct: 23 EKNPLSALSLFESASRN---------KSHSAHVFHH--ILRRLAADSRLVSHVSRIVDIV 71
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCG 136
K E++ VI Y + ++ AL F M F + V+S+NTLLNA +
Sbjct: 72 KAQKCPCKEDVAL-TVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELN 130
Query: 137 KIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ DR + E VSP+ +YNIL+ +++E A + D M + L+P + ++G
Sbjct: 131 EWDRAESFSRYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYG 190
Query: 196 TLIYGL--------------------------CLELRVDEALK---------LKEDMMRV 220
TLI G+ C + +D K + E +++
Sbjct: 191 TLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKD 250
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+V P+ + +I GLC G +L E M +N+ E D
Sbjct: 251 CSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKD 291
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 115/210 (54%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + +D+ ++I +L D V P + + +I+ + + +L++++ M
Sbjct: 224 YNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERM 283
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + ++++L++ + G ID ++ +I+E + DA ++N +++G + ++
Sbjct: 284 TKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDAVTHNAMLNGFCRAGKI 343
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+++++++ M K Q T+V++ LI GL +V+EA+ + E + + +P++ +
Sbjct: 344 KESFELWMVMGKENCQ-TVVSYNILIKGLFENGKVEEAISIWELLCK-KGCRPESTTYGV 401
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI GLC G L+ AL +E ++DA
Sbjct: 402 LIHGLCKNGRLNKALKIFKEAEDGPGKLDA 431
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A+ + ++M + N L+N + K++ + F+ ME K SP SYN
Sbjct: 447 MDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNT 506
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + R +A+ EML++ +P ++T L+ GLC E +++ AL L + +
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALD-K 565
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
KPD ++ L+ GLC+V +L AL M R+
Sbjct: 566 GFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRS 600
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 3/172 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KY 151
+I + + +E A+ + D M S N++ V S+ TL+N M+ G + +F M +
Sbjct: 157 LIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRG 216
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEA 210
V D YN+L+ G + ++++ ++K + P +VT+ +I GLC R DE+
Sbjct: 217 VVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDES 276
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L++ E M + K D ++SLI GLC G + A+ +E+V + + +DA
Sbjct: 277 LEIWERMTKNEREK-DMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVVDA 327
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I + + ++ +L + + P+ + +I+ + L AL+V
Sbjct: 150 NLQTYNILIKISCKKQQIEKAISLLDWM-WSQNLKPDVFSYGTLINGMVKVGDLLGALKV 208
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCV 167
FDEMS V V +N L++ G D+ ++++ + K S P+ +YNI+++G
Sbjct: 209 FDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLC 268
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R +++ ++++ M K + + T+ +LI+GLC +D A+++ ++++ ++ DA
Sbjct: 269 KCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIVES-SLVVDA 327
Query: 228 QVFASLIKGLCAVGEL 243
+++ G C G++
Sbjct: 328 VTHNAMLNGFCRAGKI 343
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L +E I L K R PE + +I + L AL++
Sbjct: 361 VVSYNILIKGLFENGKVEEAISIWELLCKKGCR--PESTTYGVLIHGLCKNGRLNKALKI 418
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGC 166
F E + +++++++ + G++D + M+K + P C N L++G
Sbjct: 419 FKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVC--NPLINGF 476
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V + +LEDA F EM + PT+V++ TLI GLC R EA ++M+ KPD
Sbjct: 477 VRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEMLE-KEWKPD 535
Query: 227 AQVFASLIKGLCAVGELSLALGFKEE 252
+ L+ GLC ++ +AL ++
Sbjct: 536 MITCSLLMDGLCQEKKIEMALNLWQQ 561
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L A D ++ ++ + VV + + +++ + RA ++ + ++
Sbjct: 291 DMFTYSSLIHGLCEAGNIDGAVRVYKEIVESSLVV-DAVTHNAMLNGFCRAGKIKESFEL 349
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ M N Q TV S+N L+ + GK++ +++++ +K P++ +Y +L+HG
Sbjct: 350 WMVMGKENCQ-TVVSYNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCK 408
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM----------- 217
+ RL A K+F E + + +++ GLC E R+DEA+ + M
Sbjct: 409 NGRLNKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHV 468
Query: 218 -----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M P + +LIKGLC S A F +EM+
Sbjct: 469 CNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNTLIKGLCKAERFSEAYSFVKEML 528
Query: 255 RNKIEMD 261
+ + D
Sbjct: 529 EKEWKPD 535
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
LE ALQ++ M + + NTL+ + ++ ++++ I++ + PD SYNI
Sbjct: 587 LEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKASEIWDCILKDGLHPDIISYNI 646
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ G R+ DA + ++ L R + PT VT+ L+
Sbjct: 647 TIKGLCSCSRISDAIEFLNDALNRGILPTAVTWNILV 683
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II +L + Q + ++ HD + P+ I + +I + R+ A Q+ +M
Sbjct: 79 YNAIIDRLCKDGHHIHAQNLFTEM-HDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDM 137
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V +F+ L+NA++ GK+ +++ ++ + + P +YN ++ G RL
Sbjct: 138 IERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRL 197
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA ++ D M + P +VTF TLI G C RVD +++ +M R + + + +
Sbjct: 198 NDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHR-RGIVANTVTYTT 256
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C VG+L A M+ + +
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGV 282
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 104/209 (49%), Gaps = 9/209 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II L + + +L +++ +T + +I+ +I + HA +F EM
Sbjct: 44 YGTIINGLCKMGDTESALNLLSKME-ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEM 102
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYNILMHGCVVS 169
+ V +++ ++++ G R TD Q++ E+ ++PD +++ L++ V
Sbjct: 103 HDKGIFPDVITYSGMIDSFCRSG---RWTDAEQLLRDMIERQINPDVVTFSALINALVKE 159
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++ +A +++ +ML+R + PT +T+ ++I G C + R+++A ++ D M + PD
Sbjct: 160 GKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRML-DSMASKSCSPDVVT 218
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
F++LI G C + + EM R I
Sbjct: 219 FSTLINGYCKAKRVDNGMEIFCEMHRRGI 247
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ +P +VTF TL+ GLC E RV +AL L + M V+ Q + ++I GLC +G
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRM-----VEEGHQPYGTIINGLCKMG 55
Query: 242 ELSLALGFKEEMVRNKIE 259
+ AL +M I+
Sbjct: 56 DTESALNLLSKMEETHIK 73
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E PD ++ LM+G R+ A + D M++ QP +GT+I GLC
Sbjct: 1 MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ AL L M + +K ++ ++I LC G
Sbjct: 57 TESALNLLSKMEETH-IKAHVVIYNAIIDRLCKDGH 91
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E + +KP ++ Y+ +I+ L + + ++L + + ++ P + F ++I
Sbjct: 280 NKMETKGIKP---DVFTYNSLISCLCNYGRWSDASRLLSDMI-ERKINPNVVTFNSLIDA 335
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ + L A ++FDEM ++ + ++N+L+N ++D +F +M K PD
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 395
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G ++R+E+ ++F EM +R L VT+ TLI GL D A K+ +
Sbjct: 396 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 455
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M+ V PD ++ L+ GLC G+L AL E + ++K+E
Sbjct: 456 KMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKME 498
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I DE QQI L +P+ + + +I + +A+ +E +++
Sbjct: 360 NIVTYNSLINGFCMHDRLDEAQQIF-TLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMEL 418
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EMS + ++NTL+ + G D +F+ M V PD +Y+IL+ G
Sbjct: 419 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCK 478
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A VF+ + K +++P + T+ +I G+C +V++ L + + VKP+
Sbjct: 479 YGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCS-LSLKGVKPNVI 537
Query: 229 VFASLIKGLCAVG 241
++ ++I G C G
Sbjct: 538 IYTTMISGFCRKG 550
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y ++ L + D +L +++ ++ +I+ +I + + ++ A +
Sbjct: 220 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEANVVIYNTIIDGLCKYKHMDDAFDL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++M + ++ V ++N+L++ + G+ + L M E+ ++P+ ++N L+
Sbjct: 279 FNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K+FDEM++R + P +VT+ +LI G C+ R+DEA ++ +M + PD
Sbjct: 339 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVV 397
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 398 TYNTLIKGFCKAKRVEEGMELFREM 422
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q++ + + + +++ + R L
Sbjct: 76 RPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILLNCFCRRSQLP 133
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL V +M + + + ++LLN +I L Q++E PD ++N L+
Sbjct: 134 LALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLI 193
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + + +A + D M+ R QP L T+GT++ GLC +D AL L + M + +
Sbjct: 194 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KI 252
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + ++ ++I GLC + A +M I+ D
Sbjct: 253 EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPD 290
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK +E ++ ++ +V + + +I +A + A ++
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKI 453
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK+++ +F+ ++K + P+ +YNI++ G
Sbjct: 454 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCK 513
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P ++ + T+I G C + +EA L + M+ PD+
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE-MKEDGTLPDSG 572
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+ G+ + + +EM
Sbjct: 573 CYNTLIRARLRDGDKAASAELIKEM 597
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + +A + + L Q++ + P E + ++ + + + A +V
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQMRVRG-LCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
EM +V ++N L+N GK +D + L + EK ++PD SY+ ++ G
Sbjct: 403 LKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCR 462
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +++A +V +M+ + ++P +T+ +LI G C + R EA L ++M+RV + PD
Sbjct: 463 SYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRV-GLPPDEF 521
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI C G+L A+ EMV +
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGV 551
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 38/251 (15%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ LK NL+ Y+++I L R E+ +L ++ + +E+ + +I Y +
Sbjct: 265 SMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL-DEVTYNTLIKGYCKE 323
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------- 145
AL + EM + +V ++ +L+++M G ++R T+
Sbjct: 324 GNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTY 383
Query: 146 ---------------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
++++ SP +YN L++G ++ ++ DA V ++M +
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKE 443
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ L P +V++ T++ G C VDEAL++K M+ +KPD ++SLI+G C
Sbjct: 444 KGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMV-AKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 245 LALGFKEEMVR 255
A +EM+R
Sbjct: 503 EACDLFDEMLR 513
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 2/208 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+ ++ R+K + + + ++V P + +I + A L+ A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVA 224
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L+ FD M V ++NTL++ KID +L + M K + P+ SYN++++G
Sbjct: 225 LRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVING 284
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+++ V EM KR VT+ TLI G C E +AL + +M+R + + P
Sbjct: 285 LCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLSP 343
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ SLI +C G ++ A F ++M
Sbjct: 344 SVITYTSLIHSMCKAGNMNRATEFLDQM 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLF-Q 146
+F V+ Y R L++ AL + + V S+N +L+A + + I ++F +
Sbjct: 136 VFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
+++ VSP+ +YNIL+ G ++ L+ A + FD M K+ P +VT+ TLI G C +
Sbjct: 196 MLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK 255
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+D+ +L M + ++P+ + +I GLC G +
Sbjct: 256 IDDGFELLRSMA-LKGLEPNLISYNVVINGLCREGRM 291
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
KM D + +L +K + + P+ + + V+S + R+ ++ AL+V +M + ++
Sbjct: 429 GKMVDAIA-VLEDMK-EKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTI 486
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++++L+ + DLF +++ + PD +Y L++ + L+ A ++ +EM
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA--------------Q 228
+++ + P +VT+ LI GL + R EA +L + +V D +
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFK 606
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
SLIKG C G ++ A E M+ + D
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDG 640
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 91/205 (44%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ ++L + + P I + VI+ R ++ V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFELLRSMALKG-LEPNLISYNVVINGLCREGRMKEISFV 297
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM+ ++NTL+ G + + M ++ +SP +Y L+H
Sbjct: 298 LTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCK 357
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + A + D+M R L P T+ TL+ G + ++EA ++ ++M+ P
Sbjct: 358 AGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMID-NGFSPSVV 416
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI G C G++ A+ E+M
Sbjct: 417 TYNALINGHCIAGKMVDAIAVLEDM 441
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
KS +L+ G + +F+ M EK PD +YN+++HG + A+ ++ E
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKE 665
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
M+K VT L+ L E +V+E + +++R
Sbjct: 666 MVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLR 703
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 109/190 (57%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + G+ + L M E+ ++PD +++ L+ V
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P++VT+ +LI G C+ R+DEA ++ E M+ + PD
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVV 397
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 398 TYNTLIKGFC 407
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + ++L + + ++
Sbjct: 275 ALNLFKE-------METKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + + L A +++DEM ++ ++ ++++L+N ++D +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K+ PD +YN L+ G +R+E+ +VF EM +R L VT+ LI GL
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D A ++ ++M+ V P+ + +L+ GLC G+L A+ E + R+K+E
Sbjct: 444 AGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I DE +Q+ + KH P+ + + +I + + + +E +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+VF EMS + ++N L+ + G D ++F +++ V P+ +YN L+ G
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +LE A VF+ + + +++PT+ T+ +I G+C +V++ L + + + VKPD
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPD 535
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G C G A +EM
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E L+P +L Y+ II L + K D+ + +++ + P + + ++IS
Sbjct: 245 NKMEQGKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETKG-IRPNVVTYSSLISC 300
Query: 97 ---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV 152
YGR A ++ +M + V +F+ L++A + GK+ L+ +++++ +
Sbjct: 301 LCNYGR---WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P +Y+ L++G + RL++A ++F+ M+ + P +VT+ TLI G C RV+E ++
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +M + + + + LI+GL G+ +A +EMV + +
Sbjct: 418 VFREMSQ-RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + ++++ Y ++ + A+ + D+M Q +FNTL++ + K L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++ K PD +Y ++++G + A+ + ++M + +L+P ++ + T+I GLC
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+AL L ++M ++P+ ++SLI LC G S A +M+ KI D
Sbjct: 269 YKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q++ + + + +I+ + R L
Sbjct: 76 RPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLP 133
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL V +M + + + ++LLN +I L Q+ P+ ++N L+
Sbjct: 134 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + + +A + D M+ + QP LVT+G ++ GLC D A L M + +
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KL 252
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P ++ ++I GLC + AL +EM
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R P I F ++S + + + + ++M + + +++ L+N ++
Sbjct: 75 SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPL 134
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P+ + + L++G S+R+ +A + D+M QP VTF TLI+
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + ++ GLC G+ LA +M + K+E
Sbjct: 195 GLFLHNKASEAMALI-DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L +A D Q+I ++ D V P + + ++ + LE A+ V
Sbjct: 430 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ + ++ T+ ++N ++ M GK++ DLF + K V PD +YN ++ G
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E+A +F EM + P + TLI
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRR 171
SF + T K F + +++ G ++ F + SY+ L + +
Sbjct: 4 SFAIASTAKRF--VHRSLVVRGNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELK 61
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L+DA +F EM+K R P+++ F L+ + + D + L E M + + + ++
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL-GIPHNHYTYS 120
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LI C +L LAL +M++
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMK 144
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 241 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 289
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A +++D+M ++ + ++N+L+N ++D+ +
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 350 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 409
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 410 DGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 466
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 107/190 (56%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 186 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 245 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K++D+M+KR + P + T+ +L+ G C+ R+D+A ++ E M+ + PD
Sbjct: 305 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS-KDCFPDVV 363
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 364 TYNTLIKGFC 373
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 360 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 419
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 420 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 479
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 480 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 514
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + K FD V + +++ +V + +I+ + R + AL +
Sbjct: 46 SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 104
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M + ++ + ++LLN +I D + + Q++E PD ++ L+HG +
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A + D M++R QP LVT+G ++ GLC D AL L + M ++ D
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL-NKMEAAKIEADVV 223
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+F ++I LC + AL +EM
Sbjct: 224 IFNTIIDSLCKYRHVDDALNLFKEM 248
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D LAL L N EA ++ +++ ++ II L + + D+ + +++
Sbjct: 200 RGDTDLALNLL-------NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEME 249
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ P + + ++IS YGR A Q+ +M + + +FN L++A +
Sbjct: 250 TKG-IRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 305
Query: 136 GKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK L+ M ++ + PD +YN L++G + RL+ A ++F+ M+ + P +VT+
Sbjct: 306 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 365
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI G C RV++ +L +M + D + +LI+GL G+ A ++MV
Sbjct: 366 NTLIKGFCKSKRVEDGTELFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 424
Query: 255 RNKIEMD 261
+ + D
Sbjct: 425 SDGVPPD 431
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + ++M + + ++N L+N +I
Sbjct: 41 SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 100
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + + L++G +R+ DA + D+M++ +P +TF TLI+
Sbjct: 101 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 160
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +P+ + ++ GLC G+ LAL +M KIE
Sbjct: 161 GLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 219
Query: 260 MD 261
D
Sbjct: 220 AD 221
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 400 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 458
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 459 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 518
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 519 QEAYALLKKMKEDGPLPNSGTYNTLI 544
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
S + Y ++ + +L+DA +F M+K R P++V F L+ + + D +
Sbjct: 9 SSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVIS 68
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
L E M R+ + + LI C ++SLAL +M++
Sbjct: 69 LGEKMQRL-EIVHGLYTYNILINCFCRRSQISLALALLGKMMK 110
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 35/188 (18%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+FDE+ +Q T SFNTL+N G ++ L +ME++ V PD +Y+ L+ G
Sbjct: 254 IFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLC 313
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------MR 219
+LEDA +F EM R L P VTF TLI G C RVD AL++ + M +
Sbjct: 314 KECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLV 373
Query: 220 VYN--------------------------VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+YN + PD + +L+ G C G+L LAL ++EM
Sbjct: 374 LYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEM 433
Query: 254 VRNKIEMD 261
V+ I++D
Sbjct: 434 VKEGIQLD 441
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P+ + +I + LE A +F EM + +F TL+N G++D
Sbjct: 297 RVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLA 356
Query: 142 TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+++Q M K + D YN L+ G +A K EM KR L P T+ TL+ G
Sbjct: 357 LEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDG 416
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C E ++ AL+++++M++ ++ D F ++I GLC G++ A EM+R ++
Sbjct: 417 SCKEGDLELALEMRKEMVK-EGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKP 475
Query: 261 D 261
D
Sbjct: 476 D 476
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 8/205 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+LLH+ ++++ G+ IL + +F ++S Y + A+Q
Sbjct: 131 SLLHF--VVSRKGKGSASSVFASILET----KGTLSSSFVFDALMSVYTEFGYVSDAIQC 184
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F N++ LL M+ + + +I++ P+ ++N+LM+
Sbjct: 185 FRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCK 244
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++DA +FDE+ K LQPT V+F TLI G C ++E +LK +M + V PD
Sbjct: 245 EGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKM-VMEEFRVFPDVF 303
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+++LI GLC +L A +EM
Sbjct: 304 TYSALIDGLCKECQLEDANHLFKEM 328
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 100/210 (47%), Gaps = 3/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +L+ Y+ +I L + F E ++ + ++ ++P++ + ++ + LE
Sbjct: 366 KGLKADLVLYNTLIDGLCKGGYFREARKFVGEMT-KRGLIPDKFTYTTLLDGSCKEGDLE 424
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
AL++ EM +Q +F +++ + GKI D L +++ + PD +Y ++M
Sbjct: 425 LALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVM 484
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++ +K+ EM P ++T+ L+ GLC + +V A L M+ + V
Sbjct: 485 DGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNL-GV 543
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + L++G C G+L K EM
Sbjct: 544 VPDDITYNILLQGHCKHGKLGDFQNVKTEM 573
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 120/247 (48%), Gaps = 15/247 (6%)
Query: 8 SPFRLASLLR-LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
SP +A +LR L LAL F+ A+ + FRY + +I LG+ K
Sbjct: 126 SPELVAEVLRNLSNAGILALAFFR---------WAERQQGFRYTAESFHNLIEALGKIKQ 176
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F V ++ ++ R + + F ++ Y RAR ++ A++ F++MSSF ++ + +N
Sbjct: 177 FRLVWSLVEAMR--CRGLLSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYN 234
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
L++ + ++ + +F+ M++ PD +Y +LM G + L V+ EML
Sbjct: 235 WLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLD 294
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P +V +GTLI C + DEA+K+ + M P V+ LI GL + L
Sbjct: 295 AGIKPDVVAYGTLISSFCKSGKCDEAIKVFRE-MEANGCMPSPHVYCMLINGLGSEERLD 353
Query: 245 LALGFKE 251
AL + E
Sbjct: 354 EALKYFE 360
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 5/195 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + K P E+ CN V+ Y R+ +HA ++ DE
Sbjct: 339 YCMLINGLGSEERLDEALKYFELSKASG--FPMEVPTCNAVVGAYCRSSKFQHAFKMVDE 396
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M + ++++ +L ++ KI+ ++FQ M + P +Y +++ + R
Sbjct: 397 MRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNER 456
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A KV+ +M ++ + P + F +LI GLC E R++EA ++M+ ++P Q+F+
Sbjct: 457 VDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLD-KGIRPPGQLFS 515
Query: 232 SLIKGLCAVGELSLA 246
+L + L G +SLA
Sbjct: 516 NLKEALIEGGRISLA 530
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I+ ++ DE ++ +++ + +P ++C +I+ G L+ AL+
Sbjct: 300 DVVAYGTLISSFCKSGKCDEAIKVFREMEANG-CMPSPHVYCMLINGLGSEERLDEALKY 358
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F+ + V + N ++ A K + M K + P+A +Y+I++ +
Sbjct: 359 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIK 418
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S+++E+A+ VF M +P L T+ ++ C RVD ALK+ + M+ V P
Sbjct: 419 SQKIEEAYNVFQRMGMEGCEPQLNTYTMMVGMFCSNERVDMALKVWKQ-MKEKGVLPCMH 477
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+F+SLI GLC L A + +EM+ I
Sbjct: 478 MFSSLINGLCFENRLEEACVYFQEMLDKGI 507
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 118/248 (47%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L + D+ + +L+ + P I + +I + R+ L+ A+
Sbjct: 364 NLFVYNALINSLCKGGDLDKAE-LLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF------------------------ 145
FD M + TV ++N+L+N G + LF
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482
Query: 146 ------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++++ ++P+ ++ L+ G + ++ +A ++FDE+++R+++PT VT
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVT 542
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI G C + ++D+A +L EDM + + PD + LI GLC+ G +S A F +++
Sbjct: 543 YNVLIEGYCRDGKIDKAFELLEDMHQ-KGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601
Query: 254 VRNKIEMD 261
+ ++++
Sbjct: 602 HKQNVKLN 609
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%), Gaps = 2/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P F ++IS Y + ++ A +++++M + V +F L++ + + K+ +
Sbjct: 466 VEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEAS 525
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF +++E+ + P +YN+L+ G +++ A+++ ++M ++ L P T+ LI GL
Sbjct: 526 ELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGL 585
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C RV +A +D+ + NVK + +++L+ G C G L AL EM++ I MD
Sbjct: 586 CSTGRVSKAKDFIDDLHK-QNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMD 644
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 36/215 (16%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
HD + P+ +I+ ++I Y + + A + +D M + V ++ L+N + G++
Sbjct: 672 HDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEM 731
Query: 139 DRMTDLFQIMEKY-VSPDACSY----------------------------------NILM 163
DR LF+ M+ V P++ +Y NI++
Sbjct: 732 DRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIII 791
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R +A KV EM + + P VT+ TLIY C V ++KL + M+ +
Sbjct: 792 RGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLN-RGL 850
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+PD + LI G C GEL A +++M+R I
Sbjct: 851 EPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGI 885
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 92/177 (51%), Gaps = 2/177 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP ++ +I+ + L+ A ++ MS N++ +++ L+++ G++D
Sbjct: 362 VPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAIS 421
Query: 144 LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F ++++ + +YN L++G L A +F EM + ++PT TF +LI G C
Sbjct: 422 YFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYC 481
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+L+V +A KL M+ + P+ F +LI GLC+ +++ A +E+V KI+
Sbjct: 482 KDLQVQKAFKLYNKMID-NGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIK 537
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 3/214 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+++I L + E ++ L + + + +C ++ + R + E
Sbjct: 256 FDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLG-GKGLAADVVTYCTLVLGFCRLQQFEAG 314
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+Q+ DEM T + + L++ + GKID +L + ++ P+ YN L++
Sbjct: 315 IQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINS 374
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
L+ A ++ M L+P +T+ LI C R+D A+ + M++ +
Sbjct: 375 LCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD-GIGE 433
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ SLI G C G+LS A EM +E
Sbjct: 434 TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVE 467
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 4/178 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L +A D + +++ V P I + + + ++ A+ +
Sbjct: 714 NVVTYTALMNGLCKAGEMDRAGLLFKRMQA-ANVPPNSITYGCFLDNLTKEGNMKEAIGL 772
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
M + TV + N ++ G+ T L ++ E + PD +Y+ L++
Sbjct: 773 HHAMLKGLLANTV-THNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCR 831
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S + + K++D ML R L+P LV + LIYG C+ +D+A +L++DM+R + PD
Sbjct: 832 SGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLR-RGIIPD 888
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P F +IS + A ++FDE+ ++ T ++N L+ GKID
Sbjct: 498 DNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKID 557
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +L + M +K + PD +Y L+ G + R+ A D++ K+ ++ + + L+
Sbjct: 558 KAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALL 617
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+G C E R+ EAL +M++ + D A LI G
Sbjct: 618 HGYCQEGRLMEALSASCEMIQ-RGINMDLVCHAVLIDG 654
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+NLL + +++ +++FD V ++ +L ++PE +++ + R +
Sbjct: 158 FNLLVQNYVLS----SRIFDAV--VIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWE 211
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+FDE + V+ + + ++ +M R + + ME +YN+L+HG
Sbjct: 212 LFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLC 271
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+ +A +V + + L +VT+ TL+ G C + + ++L ++M+ + P
Sbjct: 272 KGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVEL-GFSPTE 330
Query: 228 QVFASLIKGLCAVGELSLA 246
+ L+ GL G++ A
Sbjct: 331 AAVSGLVDGLRKQGKIDDA 349
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II L + + +E I ++ + P + ++I + +H +
Sbjct: 213 NVITYNTIIDCLFKDRQVNEALNIFSEMIAKG-ISPNVSTYNSIIHGLCKFSEWKHVATL 271
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM + V F TL++A+ G + D+ +M ++ V PD +Y LM G +
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++A KVFD M+++ P ++++ TLI G C R+D+A+ L E+M + + P+
Sbjct: 332 RSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQ-RELVPNIV 390
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC VG L A+ EMV
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMV 416
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + AL +FD+M Q ++ TL++ + G L
Sbjct: 142 PDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRL 201
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M +K P+ +YN ++ R++ +A +F EM+ + + P + T+ ++I+GLC
Sbjct: 202 LRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCK 261
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L +M+ + P+ +F +L+ LC G +++A + M++ +E D
Sbjct: 262 FSEWKHVATLMNEMVD-SKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPD 318
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 87/175 (49%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +I + R + AL +F EM + + V ++N++++ + + + L
Sbjct: 212 PNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATL 271
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++++ + P+ + L+ + A V D M++R ++P +VT+ L+ G CL
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+DEA K+ + M+R P+ +++LI G C + + A+ EEM + ++
Sbjct: 332 RSEMDEADKVFDTMVR-KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQREL 385
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 37/210 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P + F +++ + L + +M S + V + ++N+ ++D +
Sbjct: 72 PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSV 131
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC- 202
L +I + PD ++ L+ G V ++ +A +FD+M+ QP VT+GTLI+GLC
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191
Query: 203 ----------------------------------LELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +V+EAL + +M+ + P+
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMI-AKGISPNVS 250
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ S+I GLC E EMV +KI
Sbjct: 251 TYNSIIHGLCKFSEWKHVATLMNEMVDSKI 280
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + A+++ M N + V ++NT+++ + +++ ++
Sbjct: 177 PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNI 236
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K +SP+ +YN ++HG + + +EM+ ++ P +V F TL+ LC
Sbjct: 237 FSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCK 296
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E V A + D+M V+PD + +L+ G C E+ A + MVR
Sbjct: 297 EGMVTIAHDVV-DVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR 347
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I + + D+ + ++ +VP + + +I L A+ +
Sbjct: 353 NVISYSTLINGYCKIQRIDKAMYLFEEMCQ-RELVPNIVTYNTLIHGLCHVGRLRDAIAL 411
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM + + ++ LL+ + +D+ + + +E ++PD SYNI++ G
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCR 471
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A +F + + L P + T+ +I GLCL+ + EA KL + M PD
Sbjct: 472 VGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFRE-MNTDGCSPDDC 530
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + +G E A+ +EM+ DA
Sbjct: 531 TYNLITRGFLRNNETLSAIQLLQEMLGRGFSADA 564
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 114/221 (51%), Gaps = 3/221 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ + + +++ Y L+I L + + + V ++ ++ + E FC ++ Y RA
Sbjct: 68 AEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVE--TFCIMMRKYARA 125
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
++ A+ F+ M ++V + +FN LL+A+ + + ++F M+ PD SY+
Sbjct: 126 NKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPDEKSYS 185
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ G + L A +VF EM++ P +VT+G ++ LC RVDEA+++ ++ M V
Sbjct: 186 ILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKE-MDV 244
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
N +P + +++ L+ + A+ EM + I+ D
Sbjct: 245 GNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKAD 285
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 102/210 (48%), Gaps = 4/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ L +A DE +++ ++ P I+ ++ YG +E A+
Sbjct: 215 DVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGN-CRPTSFIYSVLVHTYGVEHRIEDAIDT 273
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM+ ++ V ++N L+ A K + + + ME V+P++ + N+++ +
Sbjct: 274 FLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVIISSMIG 333
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + A++VF M+K +P T+ +I C + ++ ALK+ + M+ P
Sbjct: 334 QGQTDRAFRVFCRMIKL-CEPDADTYTMMIKMFCEKNELEMALKIWK-YMKSKQFVPSMH 391
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
F++LIKGLC + A EEM+ I
Sbjct: 392 TFSALIKGLCEKDNAAKACVVMEEMIEKGI 421
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 36/232 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++ +++ L ++ + Q+I +K + VP+E + ++ +G+A L A +V
Sbjct: 146 NLAAFNGLLSALCKSNNVRKAQEIFDAMK--GQFVPDEKSYSILLEGWGKAPNLPRAREV 203
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM V ++ +++ + G++D ++ + M+ P + Y++L+H V
Sbjct: 204 FREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGV 263
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------MRV 220
R+EDA F EM K+ ++ +V + LI C + ++ ++M R
Sbjct: 264 EHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRT 323
Query: 221 YNV-------------------------KPDAQVFASLIKGLCAVGELSLAL 247
NV +PDA + +IK C EL +AL
Sbjct: 324 CNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEMAL 375
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 219 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM ++ V + + L+ ++ GKI D+F M K +PD SYNI+++G
Sbjct: 278 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI--YGLCLELRVDEALKLKEDMMRVYNVKPD 226
L D +FD ML + P TF I Y C L D+A+ + +M R + VKPD
Sbjct: 338 KGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGML--DKAMIIFNEM-RDHGVKPD 394
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I LC +G++ A+ +M+ + D
Sbjct: 395 VVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 429
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 17/255 (6%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQP---LKPFRYNLLHYDLIITKLGRAKMF 67
R S P LA+ LF N + AQ L P Y Y +++ RA
Sbjct: 42 RAPSSAACGSGPALAVALF-----NRAASRAQGPRVLSPTSYT---YAILMDCCTRAHRP 93
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF-DEMSSFNVQRTVKSFN 126
+ QL T + + II +++ + A+ + AL + V S+N
Sbjct: 94 ELALAFFGQLLR-TGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 152
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK---YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
LL ++ GK + +L ++M + SPD +YN ++ G + A +F EM+
Sbjct: 153 ILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 212
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R + P LVT+ ++++ LC +D+A M+ V P+ + +LI G + G+
Sbjct: 213 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVN-KRVLPNNWTYNNLIYGYSSTGQW 271
Query: 244 SLALGFKEEMVRNKI 258
A+ +EM R+ I
Sbjct: 272 KEAVRVFKEMRRHSI 286
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F YN+L L G++ D + +++ + T P+ + + VI + + + A
Sbjct: 149 FSYNILLKSL--CNQGKSGQADNLLRMMAE--GGTVCSPDVVAYNTVIDGFFKEGDVNKA 204
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
+F EM + + ++N++++A+ +D+ L Q++ K V P+ +YN L++G
Sbjct: 205 CDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYG 264
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + ++A +VF EM + + P +VT L+ LC ++ EA + D M + P
Sbjct: 265 YSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV-FDTMAMKGQNP 323
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ G G L
Sbjct: 324 DVFSYNIMLNGYATKGCL 341
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 8/184 (4%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSF 125
F V+++L +++ + RV+ E F V YG+A L E A+ +F M F +R+VKSF
Sbjct: 93 FASVEKLLSRIRLENRVIIERS-FIVVFRAYGKAHLPEKAVDLFHRMVDEFRCKRSVKSF 151
Query: 126 NTLLNAMLTCGKIDRMTDLFQI-----MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
N++LN ++ G R + + M +SP+ S+N+++ ++ A +VF
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFR 211
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
M +++ P T+ TL+ GLC E R+DEA+ L D M+ P ++ LI GLC
Sbjct: 212 GMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLL-DEMQSEGCSPSPVIYNVLIDGLCKK 270
Query: 241 GELS 244
G+LS
Sbjct: 271 GDLS 274
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N L ++L+I L + D ++ + + + +P+ +C ++ + ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLGFVDRAIEVFRGMP-EKKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM S + +N L++ + G + R+T L M K P+ +YN L+HG +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCL 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDA 227
+L+ A + + M+ + P VT+GTLI GL + R + +L M R Y + +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRL--NQ 362
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+++ LI GL G+ A+ ++M
Sbjct: 363 HIYSVLISGLFKEGKAEEAMTLWKKMA 389
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 2/167 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
I+ +IS + E A+ ++ +M+ + + ++ +++ + GK + ++ M
Sbjct: 364 IYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGM 423
Query: 149 -EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
P+ +Y+ LM G + E+A +V+ EM + + LI GLC RV
Sbjct: 424 ISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRV 483
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
EA+ + M+ + +KPD ++S+IKGLC +G + AL EM+
Sbjct: 484 KEAMMVWSKMLTI-GIKPDTVAYSSMIKGLCGIGSMDAALKLYHEML 529
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 4/206 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ +R N Y ++I+ L + +E + ++ + P +++ VI R
Sbjct: 356 RGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMA-EKGCRPNIVVYSAVIDGLCREGKPN 414
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A ++ + M S V ++++L+ G + +++ M E S + Y++L+
Sbjct: 415 EAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLI 474
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+++A V+ +ML ++P V + ++I GLC +D ALKL +M+
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEP 534
Query: 224 K--PDAQVFASLIKGLCAVGELSLAL 247
K PD + L+ GLC ++S A+
Sbjct: 535 KSQPDVVTYNILLDGLCMQKDVSRAV 560
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 27/223 (12%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++ + + +E Q+ ++ +T E + +I ++ A+ V
Sbjct: 431 NVYTYSSLMKGFFKTGLSEEAIQVWREM-DETGCSRNEFCYSVLIDGLCGVGRVKEAMMV 489
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYNILMHG 165
+ +M + ++ ++++++ + G +D L+ M E PD +YNIL+ G
Sbjct: 490 WSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDG 549
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL------CLE--------------- 204
+ + + A + + ML R P ++T T + L C E
Sbjct: 550 LCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSFLEELVARLLKR 609
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
RV A K+ E M+ Y + P +A ++ +C +++ A+
Sbjct: 610 QRVSGACKIVEVMLGKY-LAPKTSTWAMIVPEICKPKKINAAI 651
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M + +++ V P+ F +I+ + + +++ A ++F +M +
Sbjct: 182 ILLKRGRTGM---AHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELY 238
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
+ V ++NT+++ + GK+ ++ M K V P+ SY L+ G + + ++
Sbjct: 239 HCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEID 298
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKPDAQVF 230
+A VF +ML R L+P VT+ TLI GL R DE + D + PDA F
Sbjct: 299 EAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTF--APDACTF 356
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LIK C G L A+ +EM+ K+ D+
Sbjct: 357 NILIKAHCDAGHLDAAMKVFQEMLNMKLHPDS 388
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARL 102
K F + + L++ LGRA+ + + L ++ + V ++ F ++I YG A L
Sbjct: 94 KGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGL 153
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYN 160
+ ++++F M + +V +FN+LL+ +L G+ DLF M + V+PD+ ++N
Sbjct: 154 FQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFN 213
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-R 219
L++G + +++A+++F +M P +VT+ T+I GLC +V A + M+ +
Sbjct: 214 TLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKK 273
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+V P+ + +L++G C E+ A+ +M+ ++ +A
Sbjct: 274 ATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNA 316
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 10/207 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ II L RA +L LK T V P + + ++ Y + ++ A+
Sbjct: 243 DVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVL 302
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILMHG 165
VF +M S ++ ++NTL+ + + D + D+ +PDAC++NIL+
Sbjct: 303 VFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKA 362
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR 219
+ L+ A KVF EML +L P ++ LI LC+ D A L KE ++
Sbjct: 363 HCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLG 422
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
KP A + + + LCA G+ A
Sbjct: 423 KDECKPLAAAYNPMFEYLCANGKTKQA 449
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEIIFCNVISFYGR 99
++ LKP N + Y+ +I L A +DE++ IL T P+ F +I +
Sbjct: 309 SRGLKP---NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCD 365
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------ 152
A L+ A++VF EM + + S++ L+ + + DR LF ++ EK V
Sbjct: 366 AGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDE 425
Query: 153 -SPDACSYNILMHGCVVSRRLEDAWKVFDE------------------------------ 181
P A +YN + + + + A KVF +
Sbjct: 426 CKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYE 485
Query: 182 ----MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK--PDAQVFASLIK 235
ML+R P L T+ LI GL L++ EAL + + R+ P A F S++
Sbjct: 486 LLVLMLRREFVPDLETYELLIDGL---LKIGEALLAHDTLQRMLRSSYLPVATTFHSVLA 542
Query: 236 GL 237
L
Sbjct: 543 EL 544
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ R D +++ ++ + P I + N++ R L+ ALQ+
Sbjct: 148 NVITYGTLVDGFCRVGDLDGAVELVRKMT-ERGYRPNAITYNNIMHGLCSGRKLDSALQL 206
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F EM S + V +++T++++++ GK+D L + M K SP+ +Y+ L+HG
Sbjct: 207 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLC 266
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +L++A + M + P +VT+ T+I G C R+DEA L E+M+ +P+
Sbjct: 267 KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVD-GGCQPNV 325
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ C G+ A+G E MV
Sbjct: 326 VTYTVLLDAFCKCGKAEDAIGLVEVMV 352
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 106/213 (49%), Gaps = 6/213 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARLLEH 105
F N+ Y+ ++ +A + +L Q+ R P +++ + VI+ + ++
Sbjct: 75 FAPNVFSYNTVLHGFCKANRVENALWLLEQMV--MRGCPPDVVSYTTVINGLCKLDQVDE 132
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A +V D+M Q V ++ TL++ G +D +L + M E+ P+A +YN +MH
Sbjct: 133 ACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMH 192
Query: 165 GCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+L+ A ++F EM + P + T+ T++ L +VD+A +L E M+
Sbjct: 193 GLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVS-KGC 251
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P+ ++SL+ GLC G+L A + M R+
Sbjct: 252 SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 284
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 3/208 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA K N++ Y ++ L +A DE +L ++ + P + + +I + +
Sbjct: 244 EAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTR-SGCSPNIVTYNTIIDGHCK 302
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
++ A + +EM Q V ++ LL+A CGK + L ++M EK P+ +
Sbjct: 303 LGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFT 362
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ +E A ++ M+++ P +V++ T+I GLC +V E + L E M+
Sbjct: 363 YNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 422
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLA 246
N PD F ++I +C + +A
Sbjct: 423 S-NNCVPDIVTFNTIIDAMCKTYRVDIA 449
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+LH + P+ + + +I+ ++ L+ A+++ +EM V S+NT+L+
Sbjct: 30 VLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGF 89
Query: 133 LTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
K +R+ + ++E+ V PD SY +++G ++++A +V D+M++R Q
Sbjct: 90 C---KANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQ 146
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P ++T+GTL+ G C +D A++L M R Y +P+A + +++ GLC+ +L AL
Sbjct: 147 PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGY--RPNAITYNNIMHGLCSGRKLDSAL 204
Query: 248 GFKEEM 253
+EM
Sbjct: 205 QLFKEM 210
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L +A E +L Q+ + VP+ + F +I + ++ A ++
Sbjct: 394 NVVSYNTVIAGLCKATKVHEGVLLLEQMLSN-NCVPDIVTFNTIIDAMCKTYRVDIAYEL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+ + + ++N+L++ + + D+ L + M ++ SPD +YN ++ G
Sbjct: 453 FNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S+R++ A+K+F +ML L P VT+ +I LC +DEA + E M++ P A
Sbjct: 513 KSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK-NGFDPGA 571
Query: 228 QVFASLIKGLCAVGELSLAL 247
+ +LI G C G L AL
Sbjct: 572 ITYGTLIDGFCKTGNLDKAL 591
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 97/200 (48%), Gaps = 6/200 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
T Q P +++ Y+ +I L ++K D ++ Q+ D + P+++ + VIS
Sbjct: 492 TRKQGCSP---DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDG-LAPDDVTYSIVISSLC 547
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ R ++ A V + M ++ TL++ G +D+ ++ Q++ K PD
Sbjct: 548 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVV 607
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+++I + RL A ++ + ML+ L P VT+ TL+ G C R ++A+ L E +
Sbjct: 608 TFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFE-V 666
Query: 218 MRVYNVKPDAQVFASLIKGL 237
MR +PD + +L+ L
Sbjct: 667 MRQCGCEPDNATYTTLVGHL 686
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 104/205 (50%), Gaps = 8/205 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L ++ D+ ++L ++ D P + V+ + +A +E+AL + ++M
Sbjct: 47 YNTMINGLSKSDRLDDAIRLLEEMV-DNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVS 169
V S+ T++N + K+D++ + ++M+K + P+ +Y L+ G
Sbjct: 106 VMRGCPPDVVSYTTVINGLC---KLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L+ A ++ +M +R +P +T+ +++GLC ++D AL+L ++M + PD
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFT 222
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+++++ L G++ A E MV
Sbjct: 223 YSTIVDSLVKSGKVDDACRLVEAMV 247
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++L + G+ F+ M K PD+ +YN +++G S RL+DA ++ +EM+
Sbjct: 15 SILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P + ++ T+++G C RV+ AL L E M+ + PD + ++I GLC + ++ A
Sbjct: 75 FAPNVFSYNTVLHGFCKANRVENALWLLEQMV-MRGCPPDVVSYTTVINGLCKLDQVDEA 133
Query: 247 LGFKEEMVR 255
++M++
Sbjct: 134 CRVMDKMIQ 142
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ ++ L +++ FD+ + +L ++ P+ I + VI +++ ++ A ++
Sbjct: 464 NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKL 523
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F +M S + +++ +++++ +D ++ ++M K P A +Y L+ G
Sbjct: 524 FLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCK 583
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L+ A ++ +L + P +VTF I L R+ +A +L E M+R + PD
Sbjct: 584 TGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRA-GLVPDTV 642
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+KG C A+ E M + E D
Sbjct: 643 TYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPD 675
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 1/156 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP + +++ + + +E A Q+ M V S+NT++ + K+
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416
Query: 144 LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L Q++ PD ++N ++ + R++ A+++F+ + + P LVT+ +L++GLC
Sbjct: 417 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 476
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R D+A L +M R PD + ++I GLC
Sbjct: 477 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLC 512
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 101/208 (48%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ II + + D + L L ++ P + + +++ ++R + A +
Sbjct: 429 DIVTFNTIIDAMCKTYRVD-IAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 487
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
EM+ + ++NT+++ + ++DR LF Q++ ++PD +Y+I++
Sbjct: 488 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC 547
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R +++A V + MLK P +T+GTLI G C +D+AL++ + ++ PD
Sbjct: 548 KWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQ-LLLSKGSYPDV 606
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
F+ I L G L A E M+R
Sbjct: 607 VTFSIFIDWLSKRGRLRQAGELLETMLR 634
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A++VFD M V S+NTL+N ++D+ T LF+ M +K + P+ +YN
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LMHG RL+DA +F EM+ P L T+ L+ LC + +DEA+ L + +
Sbjct: 388 LMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLK-TIEGS 446
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD Q++ +I G+C GEL A
Sbjct: 447 NMDPDIQIYTIVIDGMCRAGELEAA 471
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
+H + ++M + + V F+T+++A+ GKI D+ +M + V P+ +YN L
Sbjct: 259 KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 318
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + +++A KVFD M+ P ++++ TLI G C R+D+A L E+M +
Sbjct: 319 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ-KE 377
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ P+ + +L+ GLC VG L A+ EMV
Sbjct: 378 LIPNTVTYNTLMHGLCHVGRLQDAIALFHEMV 409
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Query: 23 KLALQLFKNPNPNPNN--TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
K+ +++ P+ +P T L P+ ++ L ++ +K D+ +++ H
Sbjct: 3 KMKMKMLTRPSSSPPGFGTCVLSLPPY-FSSLSHNRFHSKSLNFNTLDDALSSFNRMLH- 60
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F +++ + + + ++M SF + V + N L+N+ ++R
Sbjct: 61 MHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC---HLNR 117
Query: 141 MTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
F ++ K + PD ++ L+ G V ++ DA +FD+M+ QP +VT+GT
Sbjct: 118 PGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGT 177
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
LI GLC + A++L M + N +PD V+ S+I LC +++ A +MV
Sbjct: 178 LINGLCKVGNTNAAIRLLRSMEQ-GNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQ 236
Query: 257 KIEMD 261
I D
Sbjct: 237 GISPD 241
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y +++ L + DE +L ++ + + P+ I+ VI RA LE A +
Sbjct: 416 DLATYRILLDYLCKKSHLDEAMALLKTIE-GSNMDPDIQIYTIVIDGMCRAGELEAARDI 474
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F +SS ++ V+++ ++N + G +D LF M+ SPD C+YN + G +
Sbjct: 475 FSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 534
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
++ A ++ EML R + T L+ LC + ++D+++K
Sbjct: 535 NKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC-DDKLDQSVK 577
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 94/213 (44%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ ++P + + ++ L+ A+ +
Sbjct: 346 NVISYNTLINGYCKIQRMDKATYLFEEMCQK-ELIPNTVTYNTLMHGLCHVGRLQDAIAL 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ LL+ + +D L + +E + PD Y I++ G
Sbjct: 405 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 464
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F + + L+P + T+ +I GLC +DEA KL + M PD
Sbjct: 465 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME-MDGNGCSPDGC 523
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ +GL E A+ +EM+ D
Sbjct: 524 TYNTITQGLLQNKEALRAIQLLQEMLARGFSAD 556
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 8/217 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
AQP +++ Y +I L + D + ++ P + ++
Sbjct: 90 AHAQP------DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC 143
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+ L+ A V E + V ++NTL+ A+ G++D F Q+ E+ P
Sbjct: 144 KQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLV 203
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S+N ++ G +RRL DA +VF+EM+ R P LVT+ +I GLC ++DEA +L D
Sbjct: 204 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL-DR 262
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M +PD + L+ G A G L ALG MV
Sbjct: 263 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 299
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L+ ++ IIT L RA+ + ++ +++ D P + + VI ++ L+ A Q+
Sbjct: 201 TLVSFNAIITGLCRARRLADALEVFNEMI-DRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 259
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M S + + ++ L+ G++D L + M + PD +Y +++
Sbjct: 260 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 319
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA ++F E++ + P +VT+ LI G C RVDE K+ MR +P+
Sbjct: 320 VGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV----MREMACRPNVV 375
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I GL V A G EM
Sbjct: 376 TYNTMIWGLSMVDRNEEAYGMFREM 400
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 34/242 (14%)
Query: 25 ALQLFK-NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK----- 78
ALQLF+ NP P ++ + Y+++I A D +L ++
Sbjct: 10 ALQLFRENPCQLPASS------------VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQ 57
Query: 79 ---HDTRVVPEEIIFCNVISFYGRARLLEHALQVFD-EMSSFNVQRTVKSFNTLLNAMLT 134
T ++ + + C + A+ LEH FD + + Q V S+ TL+N +
Sbjct: 58 CNDRTTSIILQGLCRCGRV-----AQALEH----FDASLELAHAQPDVVSYTTLINGLCK 108
Query: 135 CGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++D DLF+ M P+A +YN L+ G RL+ A V E KR P +V
Sbjct: 109 LGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVV 168
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ TL+ L RVDEAL M V P F ++I GLC L+ AL E
Sbjct: 169 TYNTLMAALFQLGRVDEALATFTQMTEEGYV-PTLVSFNAIITGLCRARRLADALEVFNE 227
Query: 253 MV 254
M+
Sbjct: 228 MI 229
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 7/152 (4%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC- 157
RA ALQ+F E + + + ++N L+ +D L + M+ V C
Sbjct: 3 RAGSHNQALQLFRE-NPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMD--VEGMQCN 59
Query: 158 --SYNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +I++ G R+ A + FD L+ QP +V++ TLI GLC RVD A L
Sbjct: 60 DRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLF 119
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
M+ +P+A + +L+ GLC L A
Sbjct: 120 RKMVAAGGCRPNAFTYNALVDGLCKQDRLDAA 151
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%)
Query: 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
M+ G ++ LF+ + + +YN+L+ G + L+ A+ + EM +Q
Sbjct: 1 MVRAGSHNQALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCND 60
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
T ++ GLC RV +AL+ + + + + +PD + +LI GLC +G + A
Sbjct: 61 RTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFR 120
Query: 252 EMV 254
+MV
Sbjct: 121 KMV 123
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + Q+L +++ + P + + +I + RL+ A+
Sbjct: 44 DVITYSTIINGLCKMGNTTMALQLLKKME-EKGCKPNVVAYNTIIDSLCKDRLVTEAMDF 102
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EM + V +++++L+ G+++ T LF Q++E+ V P+ ++ IL+ G
Sbjct: 103 FSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCK 162
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + +AW VF+ M ++ L+P + T+ L+ G C ++DEA KL M R P+ +
Sbjct: 163 KRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDR-KGCAPNVR 221
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI G C G + A G EM + D
Sbjct: 222 SYNILINGHCKSGRIDEAKGLLAEMSHKSLTPD 254
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + + ++I L + +M E + + + + P+ + ++ Y ++ A ++
Sbjct: 149 NKVTFTILIDGLCKKRMISEAWLVFETMT-EKGLEPDVYTYNALVDGYCSRSQMDEAQKL 207
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+ M V+S+N L+N G+ID L M K ++PD +Y+ LM G
Sbjct: 208 FNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQ 267
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R ++A ++ EM L P L+T+ ++ GLC +DEA +L + M ++P+
Sbjct: 268 VGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQE-SKIEPNIF 326
Query: 229 VFASLIKGLCAVGELSLA 246
++ LI+G+C G+L A
Sbjct: 327 IYTILIEGMCTFGKLEAA 344
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 106/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I ++ DE + +L ++ H + + P+ + ++ + + + A ++
Sbjct: 219 NVRSYNILINGHCKSGRIDEAKGLLAEMSHKS-LTPDIFTYSTLMRGFCQVGRPQEAQEL 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM S+ + + +++ +L+ + G +D +L + M E + P+ Y IL+ G
Sbjct: 278 LKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCT 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A ++F + + +QPT+VT+ +I GL +EA +L + M V P++
Sbjct: 338 FGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFRE-MAVNGCLPNSC 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +I+G G+ A+ EEMV D+
Sbjct: 397 TYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADS 430
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 85 PEEIIFCNVIS-FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F ++S +A++++ A+++FDEM + V +++T++N + G
Sbjct: 8 PTLVTFNTLLSGLCSKAKIMD-AVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + M EK P+ +YN ++ R + +A F EM+K + P + T+ ++++G C
Sbjct: 67 LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
RV+EA L + M+ NV P+ F LI GLC +S A E M +E D
Sbjct: 127 NLGRVNEATSLFKQMVE-RNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 3/148 (2%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSRR 171
M +Q T+ +FNTLL+ + + KI LF M K PD +Y+ +++G
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
A ++ +M ++ +P +V + T+I LC + V EA+ +M++ + PD ++
Sbjct: 61 TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVK-EGIPPDVFTYS 119
Query: 232 SLIKGLCAVGELSLALGFKEEMV-RNKI 258
S++ G C +G ++ A ++MV RN I
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVI 147
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 1/110 (0%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ P ++N L+ G ++ DA K+FDEM+K +P ++T+ T+I GLC AL
Sbjct: 6 LQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+L + M KP+ + ++I LC ++ A+ F EMV+ I D
Sbjct: 66 QLLKKMEE-KGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPD 114
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + DE ++L ++ ++++ P I+ +I LE A ++
Sbjct: 289 NLITYSIVLDGLCKHGHLDEAFELLKAMQ-ESKIEPNIFIYTILIEGMCTFGKLEAAREL 347
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F + +Q TV ++ +++ +L G + +LF+ M P++C+YN+++ G +
Sbjct: 348 FSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLR 407
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ +A ++ +EM+ + TF
Sbjct: 408 NGDTPNAVRLIEEMVGKGFSADSSTF 433
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 20/243 (8%)
Query: 38 NTEAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91
+T+AQ L K +++ Y +I + + E Q++L ++ ++ P+ + F
Sbjct: 168 HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RKISPDVVTFS 226
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
+I+ + L A + EM S V V + NTLL+ + GK+ ++F+ M+K
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286
Query: 152 ------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
V PD +YNIL+ G + + +A ++++EM R + P VT+ ++I
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLC + R+DEA ++ D M + P+ F +LI G C G + L EM R I
Sbjct: 347 GLCKQSRLDEATQMF-DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405
Query: 260 MDA 262
+A
Sbjct: 406 ANA 408
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 101 RLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ ++ ++ D +FN V+ V+++N L++ ++ GK +L++ M + + PD +
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ +++G RL++A ++FD M + P +VTF TLI G C VD+ L+L +M
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
R + +A + +LI+G VG ++ +L +EM+ + + D
Sbjct: 401 R-RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ +KH ++ + F +I + L AL F +++ T+ +FNTLL+ +
Sbjct: 3 NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++ DLF M K P+ ++ LM+G R+ +A + D M++ LQP +T+
Sbjct: 63 EDRVSEALDLFHQMCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
GT++ G+C AL L M + ++KPD +++++I GL
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D S+NIL+ +L A F ++ K PTLVTF TL++GLC+E RV EAL L
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M KP+ F +L+ GLC G + A+ + MV + ++
Sbjct: 74 HQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 113
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q KP N++ + ++ L R E +L ++ D + P +I + ++ +
Sbjct: 75 QMCKP---NVVTFTTLMNGLCREGRVVEAVALLDRMVEDG-LQPNQITYGTIVDGMCKMG 130
Query: 102 LLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
AL + +M + ++ V ++ +++ + G+ +LF ++ +K + PD +Y
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTY 190
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ +++G S + +A ++ EML R++ P +VTF LI L E ++ A L ++M+
Sbjct: 191 SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS 250
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V P+ +L+ GLC G+L AL + M ++ +++DA
Sbjct: 251 -SGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ LE A ++++EM + ++++++N + ++D T +F M K SP+
Sbjct: 316 EGKFLE-AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++N L+ G + ++D ++F EM +R + +T+ TLI G ++ +L + ++M
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V PD +++ GL + EL AL EE+
Sbjct: 435 IS-SGVYPDTITIRNMLTGLWSKEELKKALAMLEEL 469
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P + + + Y +I L + DE Q+ + + P + F +I+ Y +
Sbjct: 327 EEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKS-FSPNIVTFNTLITGYCK 385
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
A +++ L++F EM + ++ TL+ G I+ D+FQ ++ V PD +
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445
Query: 159 YNILMHGCVVSRRLEDAWKVFDEM 182
++ G L+ A + +E+
Sbjct: 446 IRNMLTGLWSKEELKKALAMLEEL 469
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 107/213 (50%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ RA D ++++ ++ + P + F ++++ +A +E A +V
Sbjct: 44 NAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKV 103
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEM + V S+NTLL+ G + +F ++ ++ + PD ++ L+H
Sbjct: 104 FDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 163
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A + +M +R L+ VTF LI G C + +D+AL E+ MR ++P
Sbjct: 164 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEE-MRKCGIQPSVV 222
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C +G + LA EM +++ D
Sbjct: 223 CYNALINGYCKLGRMDLARELIREMEAKRVKPD 255
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N + + +I + D+ + +++ + P + + +I+ Y + ++
Sbjct: 180 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRK-CGIQPSVVCYNALINGYCKLGRMD 238
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A ++ EM + V+ V +++T+++ G +D L Q +++K V PDA +Y+ L+
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +RL DA ++F+ ML+ +QP T+ TLI G C E V++AL L ++M+R V
Sbjct: 299 RGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIR-KGV 357
Query: 224 KPDAQVFASLIKGL 237
PD ++ LI GL
Sbjct: 358 LPDVVTYSVLINGL 371
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EK 150
V + R RL E A+ V +M ++NTL+ A G++D + +M E
Sbjct: 17 VRALCARGRL-EEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG 75
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
P+ ++N +++G + R+E A KVFDEM++ L P +V++ TL+ G C + E+
Sbjct: 76 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHES 135
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L + +M + + PD F SLI C G L A+ +M + M+
Sbjct: 136 LAVFSEMTQ-RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA+ +KP +++ Y II+ + D Q L+Q V+P+ I + ++I
Sbjct: 248 EAKRVKP---DVVTYSTIISGYCKVGNLDSAFQ-LNQKMLKKGVLPDAITYSSLIRGLCE 303
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+ L A ++F+ M VQ ++ TL++ G +++ L +++ K V PD +
Sbjct: 304 EKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVT 363
Query: 159 YNILMHGCVVSRRLEDAWKV---------------FDEMLKRRLQPTLVTFGTLIYGLCL 203
Y++L++G S R ++A ++ +D ++ + + L+ G C+
Sbjct: 364 YSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCM 423
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + EA K+ + M+ N K D V++ LI G C G + AL F ++M+R+
Sbjct: 424 KGLMKEADKVYQSMLD-RNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRS 475
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V+P+ +YNIL+ RLE+A V +M P VT+ TL+ C +D A
Sbjct: 6 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ M N KP+ F S++ GLC G + A +EMVR + D
Sbjct: 66 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPD 115
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ + P + T+ L+ LC R++EA+ + D MR P+A + +L+ C G
Sbjct: 1 MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGD-MRGAGCAPNAVTYNTLVAAFCRAG 59
Query: 242 ELSLA 246
EL A
Sbjct: 60 ELDGA 64
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 117/243 (48%), Gaps = 20/243 (8%)
Query: 38 NTEAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91
+T+AQ L K +++ Y +I + + E Q++L ++ ++ P+ + F
Sbjct: 168 HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV-RKISPDVVTFS 226
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
+I+ + L A + EM S V V + NTLL+ + GK+ ++F+ M+K
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKS 286
Query: 152 ------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
V PD +YNIL+ G + + +A ++++EM R + P VT+ ++I
Sbjct: 287 MMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMIN 346
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLC + R+DEA ++ D M + P+ F +LI G C G + L EM R I
Sbjct: 347 GLCKQSRLDEATQMF-DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIV 405
Query: 260 MDA 262
+A
Sbjct: 406 ANA 408
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 101 RLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ ++ ++ D +FN V+ V+++N L++ ++ GK +L++ M + + PD +
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ +++G RL++A ++FD M + P +VTF TLI G C VD+ L+L +M
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
R + +A + +LI+G VG ++ +L +EM+ + + D
Sbjct: 401 R-RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDT 443
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ +KH ++ + F +I + L AL F +++ T+ +FNTLL+ +
Sbjct: 3 NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++ DLF M K P+ ++ LM+G R+ +A + D M++ LQP +T+
Sbjct: 63 EDRVSEALDLFHQMCK---PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
GT++ G+C AL L M + ++KPD +++++I GL
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D S+NIL+ +L A F ++ K PTLVTF TL++GLC+E RV EAL L
Sbjct: 14 DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M KP+ F +L+ GLC G + A+ + MV + ++
Sbjct: 74 HQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 113
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 111/223 (49%), Gaps = 7/223 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q KP N++ + ++ L R E +L ++ D + P +I + ++ +
Sbjct: 75 QMCKP---NVVTFTTLMNGLCREGRVVEAVALLDRMVEDG-LQPNQITYGTIVDGMCKMG 130
Query: 102 LLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
AL + +M + ++ V ++ +++ + G+ +LF ++ +K + PD +Y
Sbjct: 131 DTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTY 190
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ +++G S + +A ++ EML R++ P +VTF LI L E ++ A L ++M+
Sbjct: 191 SCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMIS 250
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V P+ +L+ GLC G+L AL + M ++ +++DA
Sbjct: 251 -SGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ LE A ++++EM + ++++++N + ++D T +F M K SP+
Sbjct: 316 EGKFLE-AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIV 374
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++N L+ G + ++D ++F EM +R + +T+ TLI G ++ +L + ++M
Sbjct: 375 TFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEM 434
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V PD +++ GL + EL AL EE+
Sbjct: 435 IS-SGVYPDTITIRNMLTGLWSKEELKRALAMLEEL 469
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P + + + Y +I L + DE Q+ + + P + F +I+ Y +
Sbjct: 327 EEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKS-FSPNIVTFNTLITGYCK 385
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
A +++ L++F EM + ++ TL+ G I+ D+FQ ++ V PD +
Sbjct: 386 AGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTIT 445
Query: 159 YNILMHGCVVSRRLEDAWKVFDEM 182
++ G L+ A + +E+
Sbjct: 446 IRNMLTGLWSKEELKRALAMLEEL 469
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 109/190 (57%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 15 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ-GKLEPGVLIYNTIIDGLCKYKHMDDALNL 73
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + G+ + L M E+ ++PD +++ L+ V
Sbjct: 74 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P++VT+ +LI G C+ R+DEA ++ E M+ + PD
Sbjct: 134 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVV 192
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 193 TYNTLIKGFC 202
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + ++L + + ++
Sbjct: 70 ALNLFKE-------METKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDM-IERKIN 118
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + + L A +++DEM ++ ++ ++++L+N ++D +
Sbjct: 119 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 178
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K+ PD +YN L+ G +R+E+ +VF EM +R L VT+ LI GL
Sbjct: 179 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 238
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D A ++ ++M+ V P+ + +L+ GLC G+L A+ E + R+K+E
Sbjct: 239 AGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 293
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I DE +Q+ + KH P+ + + +I + + + +E +
Sbjct: 155 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGM 211
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+VF EMS + ++N L+ + G D ++F +++ V P+ +YN L+ G
Sbjct: 212 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 271
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +LE A VF+ + + +++PT+ T+ +I G+C +V++ L + + + VKPD
Sbjct: 272 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPD 330
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G C G A +EM
Sbjct: 331 VVAYNTMISGFCRKGSKEEADALFKEM 357
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 121/244 (49%), Gaps = 19/244 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D LA L N E L+P +L Y+ II L + K D+ + +++
Sbjct: 29 RGDTDLAFNLL-------NKMEQGKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEME 78
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ P + + ++IS YGR A ++ +M + V +F+ L++A +
Sbjct: 79 TKG-IRPNVVTYSSLISCLCNYGR---WSDASRLLSDMIERKINPDVFTFSALIDAFVKE 134
Query: 136 GKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK+ L+ +++++ + P +Y+ L++G + RL++A ++F+ M+ + P +VT+
Sbjct: 135 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 194
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI G C RV+E +++ +M + + + + LI+GL G+ +A +EMV
Sbjct: 195 NTLIKGFCKYKRVEEGMEVFREMSQ-RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 253
Query: 255 RNKI 258
+ +
Sbjct: 254 SDGV 257
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L +A D Q+I ++ D V P + + ++ + LE A+ V
Sbjct: 225 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 283
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ + ++ T+ ++N ++ M GK++ DLF + K V PD +YN ++ G
Sbjct: 284 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 343
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E+A +F EM + P + TLI
Sbjct: 344 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 373
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
IDRM + K PD +Y ++++G + A+ + ++M + +L+P ++ + T+
Sbjct: 4 IDRM------VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 57
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I GLC +D+AL L ++ M ++P+ ++SLI LC G S A +M+ K
Sbjct: 58 IDGLCKYKHMDDALNLFKE-METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 116
Query: 258 IEMD 261
I D
Sbjct: 117 INPD 120
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ D M+ + QP LVT+G ++ GLC D A L M + ++P ++ ++I GL
Sbjct: 3 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGL 61
Query: 238 CAVGELSLALGFKEEM 253
C + AL +EM
Sbjct: 62 CKYKHMDDALNLFKEM 77
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 70/312 (22%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF--- 67
+A ++ + KD + +Q F + P +++N+ + ++ +L R ++F
Sbjct: 77 HVAEIVAVHKDTESVIQFFYWISKRPF---------YKHNMNCFISMLNRLVRDRVFAPA 127
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYG----------------RARLLEHALQVFD 111
D ++ ++ + + + F N IS G + ++E A ++
Sbjct: 128 DHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYK 187
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVS 169
+M + +Q ++ +FNTL+N + GK+ R +L QI + +SPD +Y L+ G +
Sbjct: 188 QMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPDVFTYTSLILGHCRN 246
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM------------ 217
R L+ A+ VFD M+K P VT+ TLI GLC E RVDEAL + E+M
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306
Query: 218 ----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALG-----FK 250
M+ +P+ Q + +LI GL +G+L +A+G K
Sbjct: 307 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366
Query: 251 EEMVRNKIEMDA 262
E +V N + +A
Sbjct: 367 EGLVPNTVTYNA 378
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + + ++ AL + M V+S+N ++N + K +R ++
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL---SKENRFSEA 567
Query: 145 FQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+I +K V P+ +Y L+ G + R + A+K+F +M KR+ P L T+ +LIYG
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC E + DEA L ++M R + PD F SLI G +G + A MV
Sbjct: 628 LCQEGKADEAEILLKEMER-KGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMV 680
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E + ++S + + LE A F EM + S+ L++ GK+D L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ME+ +P+ SYN +++G R +A K+ D+M+++ L P ++T+ TLI GLC
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCR 595
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R A K+ DM + P+ ++SLI GLC G+ A +EM R + D
Sbjct: 596 NGRTQFAFKIFHDMEK-RKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 652
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I +L F +I H ++ + + + +I +E A+ +
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT-YNEIIKGLCLGGDIEKAMVL 430
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++M TV ++NTL+N LT G ++ L +M E PD +YN L+ G
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A F EM++ L P V++ LI G + +VD AL L + M + P+ +
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM-GCNPNVE 549
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++I GL S A ++MV +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGL 579
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 46/255 (18%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISF 96
N+ QP +LL ++ +I L + E + IL Q+ ++D + P+ + ++I
Sbjct: 191 NSGIQP------SLLTFNTLINILSKKGKVREAELILSQIFQYD--LSPDVFTYTSLILG 242
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPD 155
+ R R L+ A VFD M +++TL+N + G++D D+ + ++EK + P
Sbjct: 243 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302
Query: 156 ACSYNI-----------------------------------LMHGCVVSRRLEDAWKVFD 180
+Y + L+ G +LE A ++
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+MLK L P VT+ LI LC+ R ALK+ M + + Q + +IKGLC
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFH-WMEGHGSLANTQTYNEIIKGLCLG 421
Query: 241 GELSLALGFKEEMVR 255
G++ A+ E+M++
Sbjct: 422 GDIEKAMVLFEKMLK 436
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +IS R LE A+ ++ +M + ++N L+N + G+ +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME + S + +YN ++ G + +E A +F++MLK PT+VT+ TLI G
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ V+ A +L D+M+ +PD + L+ G G+L A + +EMV
Sbjct: 456 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 111/209 (53%), Gaps = 4/209 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P N++ +++II L ++ + + + L+ + R +P+ + ++I + ++
Sbjct: 696 PHSANVM-WNVIIFGLCKSGRIADAKSLFESLR-NKRFLPDNFTYSSLIHGCAASGSIDE 753
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A + D M S + + ++N+L+ + GK+ R +LF ++ K +SP+ +YN L+
Sbjct: 754 AFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ +A+K+ +M++ +QPT++T+ LIYGLC + ++EA+KL + M+ NV
Sbjct: 814 EYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIE-NNVD 872
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
P+ + +LI G G + +EM
Sbjct: 873 PNYITYCTLIHGYIKSGNMEEISKLYDEM 901
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L + +EVQ++L +++ D + P++ + +I Y R + A ++
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEME-DVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
M + T ++NTLL + ID L F ++++ V+P+ S + L+ G
Sbjct: 417 CRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + E A ++ E L R L ++TF T+I GLC R+ EA +L D M+ PD+
Sbjct: 477 AGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL-DRMKELRCPPDSL 535
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +L G C +G+L A +M
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKM 560
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 112/219 (51%), Gaps = 3/219 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ K N++ Y L++ + +E ++++ ++K +V +E+ + +I+ Y +
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
++ A +V +EM + + +NT++N + G+++ + + Q ME + PD S
Sbjct: 337 RGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYS 396
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + A+++ M++ L T +T+ TL+ G C +D+AL+L M+
Sbjct: 397 YNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLML 456
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALG-FKEEMVRN 256
+ V P+ ++L+ GL G+ AL +KE + R
Sbjct: 457 K-RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 37/188 (19%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
V D ++ N +N ++ + G+I LF+ + K PD +Y+ L+HGC
Sbjct: 686 HVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGC 745
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----------------------- 203
S +++A+ + D ML L P ++T+ +LIYGLC
Sbjct: 746 AASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNG 805
Query: 204 ------------ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
E + EA KLK+ M+ ++P ++ LI GLC G + A+ +
Sbjct: 806 ITYNTLIDEYCKEGKTTEAFKLKQKMVE-EGIQPTVITYSILIYGLCTQGYMEEAIKLLD 864
Query: 252 EMVRNKIE 259
+M+ N ++
Sbjct: 865 QMIENNVD 872
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 64/309 (20%)
Query: 3 KAKPTSPFRL-ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
+ P +P L A+L R++ DP AL LF+ L P R +L+ + ++ L
Sbjct: 64 SSSPLTPALLQAALRRVRLDPDAALHLFR-------------LAPSRPSLVSHAQLLHIL 110
Query: 62 GRAKMFDEVQQILHQLK-HDTRVVPE------EIIFCNVISF------YGRARLLEHALQ 108
RA+ F + + +L L H + P + F + +SF + A L AL
Sbjct: 111 ARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTF-SAVSFDLLLRAHADAGQLSSALN 169
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------QIMEKYVS 153
VFD M + +++S N LLN ++ G ++ IM K
Sbjct: 170 VFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYC 229
Query: 154 PDA---------------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
D +Y+ +M EDA ++ + + ++ L P +V
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV 289
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ L+ G C + R++EA ++ ++M ++ D + +I G C G + A + E
Sbjct: 290 TYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNE 349
Query: 253 MVRNKIEMD 261
M I ++
Sbjct: 350 MRDAGIHVN 358
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + V+ Y E A ++ + + + V ++ L+ G+++ + +
Sbjct: 254 VAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313
Query: 148 MEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M++ + D +Y ++++G R++DA +V +EM + L + T+I GLC
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLG 373
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R++E K+ ++M V ++PD + +LI G C G + A MVRN +
Sbjct: 374 RMEEVQKVLQEMEDV-GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P EI ++ +A E AL ++ E + + + V +FNT++N + G++
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L M E PD+ +Y L G +L A + ++M P++ F + I G
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + + + +M + P+ + +LI G C G L A EMV N +
Sbjct: 580 FIAKQWHKVNDIHSEM-SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGM 635
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L ++ + ++L+ + P I + +I Y + A ++
Sbjct: 769 NIITYNSLIYGLCKSGKLSRAVNLFNKLQ-SKGISPNGITYNTLIDEYCKEGKTTEAFKL 827
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M +Q TV +++ L+ + T G ++ L Q++E V P+ +Y L+HG +
Sbjct: 828 KQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIK 887
Query: 169 SRRLEDAWKVFDEMLKRRLQPT 190
S +E+ K++DEM R L PT
Sbjct: 888 SGNMEEISKLYDEMHIRGLLPT 909
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
I F VI+ + + A ++ D M ++ TL + G++ T L
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
ME +P +N + G ++++ + EM R L P LVT+G LI G C E
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ EA L +M+ + P+ + ++L+
Sbjct: 620 LHEACNLYFEMVN-NGMNPNVFICSALMS 647
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I L + E +++L ++K + R P+ + + + Y + L A +
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMK-ELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
++M +V+ FN+ + + ++ D+ M + +SP+ +Y L+ G
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
L +A ++ EM+ + P + L+ E +VDEA
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA 658
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 12/202 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ IT AK + +V I H + P + + +I+ + + L A ++ EM
Sbjct: 572 FNSFITGHFIAKQWHKVNDI-HSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEM 630
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-RL 172
+ + V + L++ GK+D +++K V+ D ++ GC +S +
Sbjct: 631 VNNGMNPNVFICSALMSCFYKEGKVDEAN---LVLQKLVNID------MIPGCSISTIEI 681
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ V D + V + +I+GLC R+ +A L E + R PD ++S
Sbjct: 682 DKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESL-RNKRFLPDNFTYSS 740
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G A G + A ++ M+
Sbjct: 741 LIHGCAASGSIDEAFSLRDVML 762
>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
Length = 695
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L+Y+++I + KM DE + +L + +VP + ++I + + H ++
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKEL-CNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
DEM V ++N L++A+ G+I + + L +M+K V P+ +YN +M G +
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A +F+ M+K L+P ++ + LI G C VDEA+ L ++ MR N+ PD
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE-MRHKNLIPDIA 511
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ SLI GLC +G + +EM
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEM 536
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L + E Q +L + P+ + + ++ Y + A ++F+ M
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEK-PDIVTYNALMEGYCSRENVHEARELFNRM 326
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
++ V ++N L++ +D LF ++ K + P SYN L+ G S R+
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
K+ DEM P +VT+ LI LC E R+ EAL + MM+ VKP+ + +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK-KGVKPNIVTYNA 445
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ G C +++A MV++ +E D
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDE 112
Y+ +I + EV Q+L ++ + V P++ F +I + R+LE A V
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVREN-VDPDDYTFNILIDALCKEGRILE-AQGVLAM 290
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
MS + + ++N L+ + + +LF +++++ + PD +YN+L+ G ++
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A +F E+ + L PT+ ++ +LI GLC R+ KL ++M PD +
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ-PPDVVTYN 409
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
LI LC G + ALG M++ ++
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVK 437
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDL 144
++ + +I+ + ++ AL + EM +VQ + ++ L++ + G + D +
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
QI E+ + DA +YN L+ GC R ++ ++ +M++ + P TF LI LC E
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ EA + MM KPD + +L++G C+ + A MV+ +E D
Sbjct: 279 GRILEAQGVLA-MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
R R ++ A+ F+ M F+ LL A++ G LF Q+ K +SP
Sbjct: 32 RFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIA 91
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++ IL++ A+ + +LK QP LVTF T+I G C+ + +AL +++
Sbjct: 92 TFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL 151
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ D + +LI GL G++ AL +EM ++ ++
Sbjct: 152 L-AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ 192
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 2/205 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L+Y+++I + +M DE + +++H ++P+ + ++I + H ++
Sbjct: 474 DILNYNVLINGYCKTEMVDEAIVLFKEMRH-KNLIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
DEM V ++N LL+A D+ LF+ + + + PD + + ++
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG 592
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+L+ A +L P + T+ LI LC + EA+ L M + PDA
Sbjct: 593 EKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSK-MEDNDRPPDAIT 651
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
F +I L E A +EEM+
Sbjct: 652 FEIIIGVLLQRNETDKAEKLREEMI 676
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ Y R +L+ ++ M + VQ V +++ L+N + K+D +L
Sbjct: 175 PSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADEL 234
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L +DM R +KPD + +LI G C G+L A ++ M++ I +D
Sbjct: 295 KGDLKQAHDLIDDMSRK-GLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLD 351
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ + S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A ++M R ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPD 316
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + D+M ++ L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D V+ +LI GLC G
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQE-NIRLDDVVYTALISGLCQEG 366
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLSKESKMDDADELFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V + PD + +I C G++ +EM R+
Sbjct: 381 V-GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 114/207 (55%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ ++++I L R ++ +L ++ KH VP + + ++ + + + ++ A++
Sbjct: 347 SVVTFNILINFLCRKRLLGRAIDVLEKMPKHG--CVPNSLSYNPLLHGFCQEKKMDRAIE 404
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ M S + ++NTLL A+ GK+D ++ Q+ K SP +YN ++ G
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ E A ++ +EM ++ L+P ++T+ TL+ GL E +VDEA+K+ DM + ++KP A
Sbjct: 465 KVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGL-SIKPSA 523
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +++ GLC + S A+ F MV
Sbjct: 524 VTYNAIMLGLCKAQQTSRAIDFLAYMV 550
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 9/195 (4%)
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
G+ K + +IL ++ VP+ I + +I Y ++ ++ AL+V + MS V
Sbjct: 155 GKTKKATRIMEILE----NSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPD 207
Query: 122 VKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V ++NT+L ++ GK+ + M L + +++ PD +Y IL+ + A K+ D
Sbjct: 208 VVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLD 267
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM K+ +P +VT+ LI G+C E R+DEA+K +M Y KP+ +++ +C+
Sbjct: 268 EMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS-YGCKPNVITHNIILRSMCST 326
Query: 241 GELSLALGFKEEMVR 255
G A +M+R
Sbjct: 327 GRWMDAERLLSDMLR 341
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 7/220 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARL 102
K + +++ Y+++I + + DE + L+ + + +I N+I S R
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCKPNVITHNIILRSMCSTGRW 329
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ A ++ +M +V +FN L+N + + R D+ + M K+ P++ SYN
Sbjct: 330 MD-AERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNP 388
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+HG ++++ A + + M+ R P +VT+ TL+ LC + +VD A+++ + +
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEIL-NQLSSK 447
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + ++I GL VG+ A+ EEM R ++ D
Sbjct: 448 GCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPD 487
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + E+A+++
Sbjct: 417 DIVTYNTLLTALCKDGKVDAAVEILNQLSSKG-CSPVLITYNTVIDGLTKVGKTEYAVEL 475
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+EM ++ + +++TLL + GK+D +F ME + P A +YN +M G
Sbjct: 476 LEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 535
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+++ A M+++ +PT T+ LI G+
Sbjct: 536 AQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD + L+ G S + + A ++ + + P ++T+ LI G C +D+AL++
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV 198
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E M +V PD + ++++ LC G+L A+
Sbjct: 199 LERM----SVAPDVVTYNTILRSLCDSGKLKEAM 228
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI + V + LE+ K + M+ + P ++ +LI G C + +A ++ E ++
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIME-ILE 168
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + LI G C GE+ AL E M
Sbjct: 169 NSGAVPDVITYNVLIGGYCKSGEIDKALEVLERM 202
>gi|242054627|ref|XP_002456459.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
gi|241928434|gb|EES01579.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
Length = 429
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
AL V M + + SFN+LLN G+ D+ ++++M E+ + P+A +YN +
Sbjct: 200 ALDVISLMDKCGLTPDMVSFNSLLNGFYNNGRFDKAEKIWEMMKERNLQPNAKTYNAKLR 259
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G V R+EDA V MLK +P V++ LI G C E R+DE+ K+ +++++
Sbjct: 260 GLVAEGRMEDAAAVIQRMLKEGPKPDSVSYNELIRGYCKEGRLDESKKVYDELVK-NGYA 318
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
P+ F +LI L VGEL LAL +E+ K
Sbjct: 319 PNKGTFETLIPCLVEVGELDLALNCCQEIFNRK 351
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR N Y++ +++L D V +L K E+ ++ YGRA + HA
Sbjct: 91 FRDNRRVYEVAVSRLASFGRRDAVAALLDSQKPFLEASNEDFTV-RILRLYGRASMPSHA 149
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
F + ++V +FN LL A + G D + I +
Sbjct: 150 AATFVGLPP--KHKSVAAFNALLAAYVDTGDFDSLA------------------IALDEI 189
Query: 167 VVSRRLED--AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
S++ E A V M K L P +V+F +L+ G R D+A K+ E MM+ N++
Sbjct: 190 PGSQKAEPSAALDVISLMDKCGLTPDMVSFNSLLNGFYNNGRFDKAEKIWE-MMKERNLQ 248
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+A+ + + ++GL A G + A + M++ + D+
Sbjct: 249 PNAKTYNAKLRGLVAEGRMEDAAAVIQRMLKEGPKPDS 286
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 7/245 (2%)
Query: 21 DPKLALQLFKNPNPNPN-NTEAQPLKPFRYNLLH----YDLIITKLGRAKMFDEVQQILH 75
DP +A ++ K N NP + ++L+H Y+L+I L + + D V+ ++
Sbjct: 58 DPLVAFEVIKRLNNNPQVGLKFMEFCRLNFSLIHCFSTYELLIRSLCQMGLHDLVEMVIG 117
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
++ D ++ ++ V SF +A + A ++ E+ + + +N LLN ++
Sbjct: 118 YMRSDGHLIDSRVLGFLVTSF-AQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKG 176
Query: 136 GKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK+ LF+ + SP + ++NIL+ G +E +++F+ M P +VT+
Sbjct: 177 GKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTY 236
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI GLC +D A L +++ + PD + S+I G +G+L A EEM+
Sbjct: 237 NTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMI 296
Query: 255 RNKIE 259
R+ IE
Sbjct: 297 RSGIE 301
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 8/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L +A D +L +++ P+ + + ++IS + + LE A +
Sbjct: 232 DVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVL 291
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
F+EM ++ TV +FN L++ GKI M + EK S PD ++ L+ G
Sbjct: 292 FEEMIRSGIEPTVVTFNVLIDGF---GKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDG 348
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + KV+D M R + P + T+ +I LC + R+ EA L ++ +V P
Sbjct: 349 YCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ-LKCSDVFP 407
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +I G C G + A EM + D
Sbjct: 408 KPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPD 443
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 2/177 (1%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+ +H+ +P+ + F ++I Y R + L+V+D M + NV + +++ ++NA
Sbjct: 324 EAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINA 383
Query: 132 MLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +I DL Q+ V P YN ++ G + +++A + EM ++R +P
Sbjct: 384 LCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPD 443
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
VTF LI G C++ R+ EAL + + M+ + PD +SL+ L G+ S A
Sbjct: 444 KVTFTILIIGHCMKGRMVEALDIFKKMLAI-GCAPDNITISSLVACLLKAGKPSEAF 499
>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
Length = 547
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 104/194 (53%), Gaps = 1/194 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L RAK ++ ++L +L+ D +P + + +VIS Y +A +E A+ V+++M
Sbjct: 253 HNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDM 312
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++N L+N ++ ++ Q++ ++ PD +++ L+ G +L
Sbjct: 313 LESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQL 372
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA +++ EM +QP + TF +I+ LC + R EAL + ++ ++ P ++
Sbjct: 373 DDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNP 432
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 433 VIDILCKGGKVDEA 446
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++P+ YN L LI GRA+ + + D P+ F VI R
Sbjct: 177 IEPYAYNYLLNSLIAH--GRAQ---DAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNF 231
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N L++ + ++++ ++ + +++ P+A +Y
Sbjct: 232 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTS 291
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + ++EDA V+++ML+ +P VT+ LI G L ++ A+++ ++ +
Sbjct: 292 VISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI-LR 350
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ PD F+SLI G C G+L A +EM + I+
Sbjct: 351 HCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQ 388
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 92/205 (44%), Gaps = 2/205 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R+ + ++ Q+ + +PE F V A LL+ A + +
Sbjct: 111 YIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKG 170
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
S ++N LLN+++ G+ LF+ I + SPD S+N+++ G
Sbjct: 171 SRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGN 230
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ A ++ + M + P +T L+ GLC +V++ ++ + R P+A +
Sbjct: 231 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYT 290
Query: 232 SLIKGLCAVGELSLALGFKEEMVRN 256
S+I G C G++ A+ +M+ +
Sbjct: 291 SVISGYCKAGKMEDAMSVYNDMLES 315
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 14/201 (6%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEH 105
R N + Y+++I G+A + ++ QL +H P+ + F ++I Y R L+
Sbjct: 318 RPNTVTYNVLINGYGKALDMESAVRMYRQLILRH---CPPDVVTFSSLIDGYCRCGQLDD 374
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-----MEKYVSPDACSYN 160
A +++ EM ++Q V +F+ +++++ K +R + I M ++P YN
Sbjct: 375 AKRIWKEMGLHHIQPNVYTFSIIIHSLC---KQNRSAEALDILRELNMRTDIAPQTFIYN 431
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ ++++A + +M ++ P T+ LI G C++ R+ EA+ L M+
Sbjct: 432 PVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEA 491
Query: 221 YNVKPDAQVFASLIKGLCAVG 241
+PD S + + G
Sbjct: 492 -GCRPDNITVNSFVSCVLKAG 511
>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 788
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L+Y+++I + KM DE + +L + +VP + ++I + + H ++
Sbjct: 334 DVLNYNVLIDGYCKTKMVDEAMVLFKELC-NKNLVPTIASYNSLIDGLCNSGRISHVKKL 392
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
DEM V ++N L++A+ G+I + + L +M+K V P+ +YN +M G +
Sbjct: 393 LDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCL 452
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A +F+ M+K L+P ++ + LI G C VDEA+ L ++ MR N+ PD
Sbjct: 453 RNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKE-MRHKNLIPDIA 511
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ SLI GLC +G + +EM
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEM 536
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L + E Q +L + P+ + + ++ Y + A ++F+ M
Sbjct: 268 FNILIDALCKEGRILEAQGVLAMMSKRGEK-PDIVTYNALMEGYCSRENVHEARELFNRM 326
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
++ V ++N L++ +D LF ++ K + P SYN L+ G S R+
Sbjct: 327 VKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRI 386
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
K+ DEM P +VT+ LI LC E R+ EAL + MM+ VKP+ + +
Sbjct: 387 SHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK-KGVKPNIVTYNA 445
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ G C +++A MV++ +E D
Sbjct: 446 MMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDE 112
Y+ +I + EV Q+L ++ + V P++ F +I + R+LE A V
Sbjct: 233 YNSLIDGCCSVGRWQEVTQLLTKMVREN-VDPDDYTFNILIDALCKEGRILE-AQGVLAM 290
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
MS + + ++N L+ + + +LF +++++ + PD +YN+L+ G ++
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A +F E+ + L PT+ ++ +LI GLC R+ KL ++M PD +
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ-PPDVVTYN 409
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
LI LC G + ALG M++ ++
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVK 437
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDL 144
++ + +I+ + ++ AL + EM +VQ + ++ L++ + G + D +
Sbjct: 159 DQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLC 218
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
QI E+ + DA +YN L+ GC R ++ ++ +M++ + P TF LI LC E
Sbjct: 219 SQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKE 278
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ EA + MM KPD + +L++G C+ + A MV+ +E D
Sbjct: 279 GRILEAQGVLA-MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
R R ++ A+ F+ M F+ LL A++ G LF Q+ K +SP
Sbjct: 32 RFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIA 91
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++ IL++ A+ + +LK QP LVTF T+I G C+ + +AL +++
Sbjct: 92 TFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNL 151
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ D + +LI GL G++ AL +EM ++ ++
Sbjct: 152 L-AQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ 192
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 2/205 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L+Y+++I + +M DE + +++H ++P+ + ++I + H ++
Sbjct: 474 DILNYNVLINGYCKTEMVDEAIVLFKEMRHKN-LIPDIASYNSLIDGLCNLGRIPHVQEL 532
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
DEM V ++N LL+A D+ LF+ + + + PD + + ++
Sbjct: 533 LDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHAIVDNLCKG 592
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+L+ A +L P + T+ LI LC + EA+ L M + PDA
Sbjct: 593 EKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSK-MEDNDRPPDAIT 651
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
F +I L E A +EEM+
Sbjct: 652 FEIIIGVLLQRNETDKAEKLREEMI 676
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D+ +++ ++ ++ + P +++ +++ Y ++ E
Sbjct: 147 RADVVTYGTLIRGLCDAAEVDKAVELMGEMC-ESGIEPNVVVYSSLLQGYCKSGRWEDVG 205
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VF EMS ++ V + L++++ GK + + +M + + P+ +YN+L++
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+++A V +M ++ + P +VT+ TLI GL L +DEA+ L E+M+R N VKP
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ F S+I+GLC +G + A + M
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMM 353
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 3/217 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+P R N + Y +++ L ++ D+ +L ++ V + + + +I A
Sbjct: 106 EPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAA 164
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
++ A+++ EM ++ V +++LL G+ + + +F ++ EK + PD Y
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ + + A V D M++R L+P +VT+ LI +C E V EA+ + + M
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE- 283
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
V PD + +LIKGL V E+ A+ EEMVR K
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK 320
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 8/221 (3%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLL 103
P + + Y+ ++T L R D +L + + P + + ++ RL
Sbjct: 72 PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A+ + M S V+ V ++ TL+ + ++D+ +L ++ E + P+ Y+ L
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
+ G S R ED KVF EM ++ ++P +V + LI LC +V +A K DMM
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC---KVGKAKKAHGVMDMMVR 248
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++P+ + LI +C G + A+G ++M + D
Sbjct: 249 RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACS 158
L A + D + S R S+NT+L A+ G DR L + M P+A S
Sbjct: 61 LGEATSLLDALPSV---RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +LM R + A + M ++ +VT+GTLI GLC VD+A++L +M
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++P+ V++SL++G C G EM IE D
Sbjct: 178 E-SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+L+I L R + +++ ++ + P+ + +I + + ++ A +
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M ++ + + LL AM G ++R +LF M+ D +Y+ ++HG +
Sbjct: 420 LSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKA 479
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L+ A ++ ++ L P VT+ +I ++ A + + M PD V
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMT-ASGFLPDVAV 538
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F SLI+G GE++ L EM+ I +D+
Sbjct: 539 FDSLIQGYSTKGEINKVLELIREMITKNIALDS 571
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 111/248 (44%), Gaps = 40/248 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ ++ +++V ++ ++ + + P+ +++ +I + + A V
Sbjct: 184 NVVVYSSLLQGYCKSGRWEDVGKVFVEMS-EKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M ++ V ++N L+N M G + + + M EK V+PD +YN L+ G
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302
Query: 169 SRRLEDAWKVFDEMLKRR--LQPTLVTFGT------------------------------ 196
+++A + +EM++ + ++P +VTF +
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362
Query: 197 -----LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
LI GL +V +A++L ++M + ++PD+ ++ LIKG C + ++ A
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSL-GLEPDSFTYSILIKGFCKMWQVDRAEDLLS 421
Query: 252 EMVRNKIE 259
M IE
Sbjct: 422 TMRDRGIE 429
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA K+FDEML++ L P VTF TLI G C VD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 280 PDLVTYNALIYGLCKKGDLKQAHDLIDEM 308
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 2/164 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++FDEM + +F TL++ G +
Sbjct: 204 HASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWV 263
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + + PD +YN L++G L+ A + DEM L+P +T+ TL
Sbjct: 264 DLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTL 323
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I G C E +D A + ++ MM N++ D + +LI GLC G
Sbjct: 324 IDGCCKEGDLDTAFEHRK-MMIQENIRLDDVAYTALISGLCQEG 366
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + D+ ++ ++ + +VP + F +I + + ++ A++++ +M
Sbjct: 215 YSVLINGLCKESKMDDANKLFDEML-EKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQM 273
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S ++ + ++N L+ + G + + DL M + PD +Y L+ GC L
Sbjct: 274 LSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDL 333
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A++ M++ ++ V + LI GLC E R +A K+ +M+ V +KPD + +
Sbjct: 334 DTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV-GLKPDTRTYTM 392
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+I C G++ +EM R+
Sbjct: 393 IINEFCKKGDVWKGSKLLKEMQRD 416
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 12/225 (5%)
Query: 39 TEAQPLKPFRY----NLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
T L+ FR+ NL +B II LGRA + + IL + + +E +
Sbjct: 24 TSEHALQFFRWVERSNLFEHBRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDM 82
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIM 148
+ +I YG+ +++ ++++F +M V+RT+KS++ L +L G+ F +++
Sbjct: 83 WVMMIDSYGKQGIVQESVKLFQKMEELGVERTLKSYDALFKVILRRGRYMMAKRYFNKML 142
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ + P +N+L+ G +S ++E A + F++M R + P +VT+ T+I G +++
Sbjct: 143 SEGIEPTRXXFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKME 202
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
EA K + M+ N++P + +LIKG +V ++ AL EEM
Sbjct: 203 EAEKYFVE-MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEEM 246
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 114/272 (41%), Gaps = 72/272 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ + +I GRA L HA
Sbjct: 12 HELVYNVLHSAKTSEHALQFFRWVERSNLFEHBRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKS-------------- 124
+++F +M V+RT+KS
Sbjct: 72 PKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTLKSYDALFKVILRRGRY 131
Query: 125 ---------------------FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
FN L+ GK++ F+ M+ + +SPD +YN +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRXXFNVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G +++E+A K F EM R ++PT+VT+ TLI G +VD+AL+L E+ M+ +
Sbjct: 192 INGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEE-MKGFG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KP+A +++L+ GLC ++S A +EMV
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMV 282
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYLAPTDNSIFMRLITS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCTSGHLDAASDVLKAMIRL-SVPTEAGHYGVLIENFCKXGQYDQAVKLLDKLIEKDI 357
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 70/312 (22%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF--- 67
+A ++ + KD + +Q F + P +++N+ + ++ +L R ++F
Sbjct: 77 HVAEIVAVHKDTESVIQFFYWISKRP---------FYKHNMNCFISMLNRLVRDRVFAPA 127
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYG----------------RARLLEHALQVFD 111
D ++ ++ + + + F N IS G + ++E A ++
Sbjct: 128 DHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYK 187
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVS 169
+M + +Q ++ +FNTL+N + GK+ R +L QI + +SPD +Y L+ G +
Sbjct: 188 QMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPDVFTYTSLILGHCRN 246
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM------------ 217
R L+ A+ VFD M+K P VT+ TLI GLC E RVDEAL + E+M
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306
Query: 218 ----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALG-----FK 250
M+ +P+ Q + +LI GL +G+L +A+G K
Sbjct: 307 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 366
Query: 251 EEMVRNKIEMDA 262
E +V N + +A
Sbjct: 367 EGLVPNTVTYNA 378
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + + ++ AL + M V+S+N ++N + K +R ++
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL---SKENRFSEA 567
Query: 145 FQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+I +K V P+ +Y L+ G + R + A+K+F +M KR+ P L T+ +LIYG
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
LC E + DEA ++ E +P +++L+ GLC G
Sbjct: 628 LCQEGKADEAERMSE-----IGCEPTLDTYSTLVSGLCRKG 663
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I +L F +I H ++ + + + +I +E A+ +
Sbjct: 372 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT-YNEIIKGLCLGGDIEKAMVL 430
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++M TV ++NTL+N LT G ++ L +M E PD +YN L+ G
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A F EM++ L P V++ LI G + +VD AL L + M + P+ +
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEM-GCNPNVE 549
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++I GL S A ++MV +
Sbjct: 550 SYNAVINGLSKENRFSEAEKICDKMVEQGL 579
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 46/255 (18%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISF 96
N+ QP +LL ++ +I L + E + IL Q+ ++D + P+ + ++I
Sbjct: 191 NSGIQP------SLLTFNTLINILSKKGKVREAELILSQIFQYD--LSPDVFTYTSLILG 242
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPD 155
+ R R L+ A VFD M +++TL+N + G++D D+ + ++EK + P
Sbjct: 243 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 302
Query: 156 ACSYNI-----------------------------------LMHGCVVSRRLEDAWKVFD 180
+Y + L+ G +LE A ++
Sbjct: 303 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+MLK L P VT+ LI LC+ R ALK+ M + + Q + +IKGLC
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFH-WMEGHGSLANTQTYNEIIKGLCLG 421
Query: 241 GELSLALGFKEEMVR 255
G++ A+ E+M++
Sbjct: 422 GDIEKAMVLFEKMLK 436
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +IS R LE A+ ++ +M + ++N L+N + G+ +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME + S + +YN ++ G + +E A +F++MLK PT+VT+ TLI G
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 455
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ V+ A +L D+M+ +PD + L+ G G+L A + +EMV
Sbjct: 456 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 505
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 91/200 (45%), Gaps = 9/200 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L R +I H ++ + +P + ++I YG + E
Sbjct: 582 NVITYTTLIDGLCRNGRTQFAFKIFHDME-KRKCLPNLYTYSSLI--YGLCQ--EGKADE 636
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ MS + T+ +++TL++ + G+ L + M E+ PD Y L+
Sbjct: 637 AERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCK 696
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDA 227
+ ++ A K+F + + Q L + LI LC +V+EA L ++M+ + +N D
Sbjct: 697 NLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA--DE 754
Query: 228 QVFASLIKGLCAVGELSLAL 247
V+ L+ GL GEL L +
Sbjct: 755 IVWTVLVDGLLKEGELDLCM 774
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 70/312 (22%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF--- 67
+A ++ + KD + +Q F + P +++N+ + ++ +L R ++F
Sbjct: 119 HVAEIVAVHKDTESVIQFFYWISKRPF---------YKHNMNCFISMLNRLVRDRVFAPA 169
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYG----------------RARLLEHALQVFD 111
D ++ ++ + + + F N IS G + ++E A ++
Sbjct: 170 DHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYK 229
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVS 169
+M + +Q ++ +FNTL+N + GK+ R +L QI + +SPD +Y L+ G +
Sbjct: 230 QMLNSGIQPSLLTFNTLINILSKKGKV-REAELILSQIFQYDLSPDVFTYTSLILGHCRN 288
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM------------ 217
R L+ A+ VFD M+K P VT+ TLI GLC E RVDEAL + E+M
Sbjct: 289 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 348
Query: 218 ----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALG-----FK 250
M+ +P+ Q + +LI GL +G+L +A+G K
Sbjct: 349 TLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLK 408
Query: 251 EEMVRNKIEMDA 262
E +V N + +A
Sbjct: 409 EGLVPNTVTYNA 420
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 8/174 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + + ++ AL + + M V+S+N ++N + K +R ++
Sbjct: 553 PNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGL---SKENRFSEA 609
Query: 145 FQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+I +K P+ +Y L+ G + R + A+K+F +M KR+ P L T+ +LIYG
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 669
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC E + DEA L ++M R + PD F SLI G +G + A MV
Sbjct: 670 LCQEGKADEAEILLKEMER-KGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMV 722
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E + ++S + + LE A F EM + S+ TL++ GK+D L
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ME+ +P+ SYN +++G R +A K+ D+M ++ L P ++T+ TLI GLC
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R A K+ DM + P+ ++SLI GLC G+ A +EM R + D
Sbjct: 638 NGRTQFAFKIFHDMEK-RKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPD 694
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I +L F +I H ++ + + + +I +E A+ +
Sbjct: 414 NTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQT-YNEIIKGLCLGGDIEKAMVL 472
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F++M TV ++NTL+N LT G ++ L +M E PD +YN L+ G
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+LE A F EM++ L P V++ TLI G + +VD AL L E M + P+ +
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEM-GCNPNVE 591
Query: 229 VFASLIKGL 237
+ ++I GL
Sbjct: 592 SYNAVINGL 600
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 46/255 (18%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISF 96
N+ QP +LL ++ +I L + E + IL Q+ ++D + P+ + ++I
Sbjct: 233 NSGIQP------SLLTFNTLINILSKKGKVREAELILSQIFQYD--LSPDVFTYTSLILG 284
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPD 155
+ R R L+ A VFD M +++TL+N + G++D D+ + ++EK + P
Sbjct: 285 HCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPT 344
Query: 156 ACSYNI-----------------------------------LMHGCVVSRRLEDAWKVFD 180
+Y + L+ G +LE A ++
Sbjct: 345 VYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 404
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+MLK L P VT+ LI LC+ R ALK+ M + + Q + +IKGLC
Sbjct: 405 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFH-WMEGHGSLANTQTYNEIIKGLCLG 463
Query: 241 GELSLALGFKEEMVR 255
G++ A+ E+M++
Sbjct: 464 GDIEKAMVLFEKMLK 478
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +IS R LE A+ ++ +M + ++N L+N + G+ +
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME + S + +YN ++ G + +E A +F++MLK PT+VT+ TLI G
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLT 497
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ V+ A +L D+M+ +PD + L+ G G+L A + +EMV
Sbjct: 498 KGNVNNAARLL-DLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMV 547
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
VI+ + A ++ D+M+ + V ++ TL++ + G+ +F MEK
Sbjct: 596 VINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRK 655
Query: 153 S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
P+ +Y+ L++G + ++A + EM ++ L P VTF +LI G + R+D A
Sbjct: 656 CLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAF 715
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGL 237
L M+ V KP+ + ++ L+KGL
Sbjct: 716 LLLRRMVDV-GCKPNYRTYSVLLKGL 740
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 87/198 (43%), Gaps = 12/198 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y +I L + DE + +L +++ + P+E+ F ++I + ++HA +
Sbjct: 659 NLYTYSSLIYGLCQEGKADEAEILLKEMERKG-LAPDEVTFTSLIDGFVVLGRIDHAFLL 717
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M + ++++ LL + + + EK Y+ H V+
Sbjct: 718 LRRMVDVGCKPNYRTYSVLLKGL--------QKECLLLEEKVAVQHEAVYSFSPHEKDVN 769
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
E + M + +PTL T+ TL+ GLC + R EA +L +D M+ PD ++
Sbjct: 770 --FEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKD-MKERGFCPDREI 826
Query: 230 FASLIKGLCAVGELSLAL 247
+ SL+ C E+ AL
Sbjct: 827 YYSLLIAHCKNLEVDHAL 844
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
MS + T+ +++TL++ + G+ L + M E+ PD Y L+ +
Sbjct: 780 MSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE 839
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVF 230
++ A K+F + + Q L + LI LC +V+EA L ++M+ + +N D V+
Sbjct: 840 VDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA--DEIVW 897
Query: 231 ASLIKGLCAVGELSLAL 247
L+ GL GEL L +
Sbjct: 898 TVLVDGLLKEGELDLCM 914
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 113/208 (54%), Gaps = 3/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D+ +++ ++ ++ + P +++ +++ Y ++ E
Sbjct: 147 RADVVTYGTLIRGLCDAAEVDKAVELMGEM-CESGIEPNVVVYSSLLQGYCKSGRWEDVG 205
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VF EMS ++ V + L++++ GK + + +M + + P+ +YN+L++
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCM 265
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+++A V +M ++ + P +VT+ TLI GL L +DEA+ L E+M+R N VKP
Sbjct: 266 CKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKP 325
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ F S+I+GLC +G + A + M
Sbjct: 326 NVVTFNSVIQGLCDIGRMRQAFQVRAMM 353
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 3/217 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+P R N + Y +++ L ++ D+ +L ++ V + + + +I A
Sbjct: 106 EPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMR-SAGVRADVVTYGTLIRGLCDAA 164
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
++ A+++ EM ++ V +++LL G+ + + +F ++ EK + PD Y
Sbjct: 165 EVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYT 224
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ + + A V D M++R L+P +VT+ LI +C E V EA+ + + M
Sbjct: 225 GLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSE- 283
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
V PD + +LIKGL V E+ A+ EEMVR K
Sbjct: 284 KGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGK 320
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 8/221 (3%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLL 103
P + + Y+ ++T L R D +L + + P + + ++ RL
Sbjct: 72 PSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A+ + M S V+ V ++ TL+ + ++D+ +L ++ E + P+ Y+ L
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSL 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
+ G S R ED KVF EM ++ ++P +V + LI LC +V +A K DMM
Sbjct: 192 LQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLC---KVGKAKKAHGVMDMMVR 248
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++P+ + LI +C G + A+G ++M + D
Sbjct: 249 RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 8/163 (4%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACS 158
L A + D + S R S+NT+L A+ G DR L + M P+A S
Sbjct: 61 LGEATSLLDALPSV---RDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVS 117
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +LM R + A + M ++ +VT+GTLI GLC VD+A++L +M
Sbjct: 118 YTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC 177
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++P+ V++SL++G C G EM IE D
Sbjct: 178 E-SGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+L+I L R + +++ ++ + P+ + +I + + ++ A +
Sbjct: 361 NLVTYNLLIGGLLRVHKVRKAMELMDEMT-SLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M ++ + + LL AM G ++R +LF M+ D +Y+ ++HG +
Sbjct: 420 LSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKA 479
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L+ A ++ ++ L P VT+ +I ++ A + + M PD V
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQ-MTASGFLPDVAV 538
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F SLI+G GE++ L EM+ I +D+
Sbjct: 539 FDSLIQGYSTKGEINKVLELIREMITKNIALDS 571
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 104/227 (45%), Gaps = 40/227 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ ++ +++V ++ ++ + + P+ +++ +I + + A V
Sbjct: 184 NVVVYSSLLQGYCKSGRWEDVGKVFVEMS-EKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M ++ V ++N L+N M G + + + M EK V+PD +YN L+ G
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302
Query: 169 SRRLEDAWKVFDEMLKRR--LQPTLVTFGT------------------------------ 196
+++A + +EM++ + ++P +VTF +
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362
Query: 197 -----LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
LI GL +V +A++L ++M + ++PD+ ++ LIKG C
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSL-GLEPDSFTYSILIKGFC 408
>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Glycine max]
Length = 626
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 9/235 (3%)
Query: 32 PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV--VPEEII 89
PN + + +N +D++I +A M V++ L + + +P +I
Sbjct: 159 PNDGIYENLVECTEDCNWNPAIFDMLIKAYVKAGM---VEKGLATFRRNIEACFIPN-VI 214
Query: 90 FCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
CN ++S R + V++EM + R +FN + + + G D++T M
Sbjct: 215 ACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKM 274
Query: 149 EKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
E+ PD +YN L++ RRLEDA+ ++ M R + P L+T L+ GLC E +V
Sbjct: 275 EEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKV 334
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
EA +L M+ + PD + +L+ G C G++ + EM+ N I D+
Sbjct: 335 KEAHQLFHQMVH-RGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDS 388
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 3/183 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D+V + L +++ + P+ + + +++ Y + R LE A ++ M V + +
Sbjct: 265 DKVTRFLDKMEEEG-FEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTV 323
Query: 128 LLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L+N + GK+ LF Q++ + + PD SYN L+ G +++ + EM+
Sbjct: 324 LMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNG 383
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P VT ++ G + ++ AL ++ R + +K ++ LI LC G A
Sbjct: 384 ICPDSVTCRLIVEGFARDGKLLSALNTVVELKR-FRIKIPEDLYDYLIVALCIEGRPFAA 442
Query: 247 LGF 249
F
Sbjct: 443 RSF 445
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +++ R + +LH++ + + P+ + ++ + R L AL
Sbjct: 352 DVVSYNTLVSGYCREGKMQMCRSLLHEMIGNG-ICPDSVTCRLIVEGFARDGKLLSALNT 410
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
E+ F ++ ++ L+ A+ G+ + L +I + P +YN L+
Sbjct: 411 VVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCK 470
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+E+A + EM+KR + LV + +I LC R EA L E+M+ + PD +
Sbjct: 471 FNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSS-GILPDVE 529
Query: 229 VFASLIKGLC 238
+ +LI G C
Sbjct: 530 ISRALINGYC 539
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 21/219 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ + +++ L E Q+ HQ+ H + P+ + + ++S Y R ++ +
Sbjct: 317 NLITHTVLMNGLCEEGKVKEAHQLFHQMVHRG-IDPDVVSYNTLVSGYCREGKMQMCRSL 375
Query: 110 FDEM-------SSFNVQRTVKSF---NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
EM S + V+ F LL+A+ T ++ R F+I + D Y
Sbjct: 376 LHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVVELKR----FRIK---IPEDL--Y 426
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ L+ + R A + + P + T+ L+ LC V+EAL LK +M++
Sbjct: 427 DYLIVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVK 486
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ + + ++I LC V A G EEMV + I
Sbjct: 487 -RSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSSGI 524
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C V+R LE A + +EM+ + P + LI G C E +VD+A+ L + + V
Sbjct: 504 CRVNRTLE-AEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVY- 561
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D + + +++K C VG ++ L ++++++
Sbjct: 562 DTESYNAVVKVFCDVGNVAELLELQDKLLK 591
>gi|296088922|emb|CBI38482.3| unnamed protein product [Vitis vinifera]
Length = 368
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 46/286 (16%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P++L LL L D +++LF+ A K + + Y ++I KLG A F
Sbjct: 77 TPYQLCKLLELPLDVPTSMELFQ---------WAGTQKGYCHMFDVYYMLIDKLGAAGEF 127
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+L Q+K + +V E +F ++ YGRA L A ++ +M ++ + T +S+N
Sbjct: 128 KTTDALLMQMKQEG-IVFRESLFILIMKHYGRAGLPGQATRLLLDMRGVYSCEPTFRSYN 186
Query: 127 TLLNAML-------------------TC---------GKIDRMTDLFQ-IMEKYVSPDAC 157
+L+ TC G I++ LF+ +M K ++P+
Sbjct: 187 LVLDVCWLGIALRLFPMFSMRYVRKRTCSKCSGLQLAGNIEKGLALFEDMMSKGLNPNNI 246
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S NIL++G + ++ A + +M+ R L P +VT+ +LI GLC R EAL L D
Sbjct: 247 SCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF-DK 305
Query: 218 MRVYNVKPDAQVFASLIKGLCAVG-----ELSLALGFKEEMVRNKI 258
++V + PDA + +LI C G L L+ G + N++
Sbjct: 306 LQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEV 351
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 89 IFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
I CN+ I+ R ++HAL+ +M + + ++N+L+N + G+ +LF
Sbjct: 246 ISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDK 305
Query: 148 ME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++ + + PDA +YN L+ +DA + + P VT+ L+
Sbjct: 306 LQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 357
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A VF+ ++ + ++ +V SFNTL+N + G +D L M V PD +Y++L++
Sbjct: 144 AQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLIN 203
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 204 GLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLX 262
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y R ++ ++ + M + VQ V +++ L+N + K+D ++
Sbjct: 158 PSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEM 217
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCK 277
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G+L A ++ M++ I +D
Sbjct: 278 KGDLKQAHDLI-DEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLD 334
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 6/218 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A ++P Y Y ++I L + D+ ++ ++ D +VP + F +I
Sbjct: 184 NAMHASGVQPDVYT---YSVLINGLCKESKMDDANEMFDEML-DKGLVPNGVTFTTLIDG 239
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + ++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD
Sbjct: 240 HCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 299
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ GC LE A++ M++ ++ V + LI GLC E R +A K+
Sbjct: 300 KITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLR 359
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+M+ V +KPD + +I C G++ +EM
Sbjct: 360 EMLSV-GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEM 396
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VF+ + K L+P++V+F TL+ G +DE +LK + M
Sbjct: 128 FNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLK-NAM 186
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 187 HASGVQPDVYTYSVLINGLCKESKMDDANEMFDEML 222
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPD 316
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL+ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDL 265
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++ M + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 266 AMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A K ++ M++ N++ D + +LI GLC G
Sbjct: 326 GCCKEGDLDTAFKHRKRMIQG-NIRLDDVAYTALISGLCQEG 366
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ ++P + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LIPNGVTFTTLIXGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A+K M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 381 V-GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRN 416
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-M 141
++P+ I + +I + L+ A + DEMS ++ ++ TL++ G +D
Sbjct: 278 LLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAF 337
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++++ + D +Y L+ G R DA K+ EML L+P + T+ +I
Sbjct: 338 KHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEF 397
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
C + V + KL ++M R +V P + L+ G
Sbjct: 398 CKKGDVWKGSKLLKEMQRNGHV-PSVVTYNVLMNG 431
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I+ L +A M E + L ++ P + + +I Y +AR +E AL
Sbjct: 63 NAILYNNLISCLCKAGMLAEAESYLKRMPQ--HCAPNVVSYNIIIDGYCKARNIEKALAF 120
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM T ++++++ + G + + D+F M K PD ++N+L+ G
Sbjct: 121 LREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWR 180
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+R++ +A ++F M R +P +VT+ T+I GLC ++DEA+ L E M+ +V P
Sbjct: 181 ARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLE-RMKQEDVSPTFV 239
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI LC L A E+M
Sbjct: 240 TYTTLIDHLCKFARLQQAYEVFEKMAEG 267
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 120/247 (48%), Gaps = 16/247 (6%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L+ L R +K + A +LF++ N ++ KP +++ Y+ +I L + K DE
Sbjct: 175 LSGLWRARKIHE-ARELFRSMN-------SRGCKP---DVVTYNTMIAGLCKWKKLDEAV 223
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL-- 129
+L ++K + V P + + +I + L+ A +VF++M+ T +++ L+
Sbjct: 224 FLLERMKQED-VSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILI 282
Query: 130 NAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
N + + ++FQ M + +SP +YN L+ G + + +L+DA ++ ML +
Sbjct: 283 NGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPA 342
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P + T+ LI LC +V+EA KL MR P +++ L+ L G L A
Sbjct: 343 PNMFTYEILISSLCKTDQVEEAFKLL-SAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFE 401
Query: 249 FKEEMVR 255
+EM R
Sbjct: 402 LYKEMSR 408
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 107/208 (51%), Gaps = 5/208 (2%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K ++++++++++ L RA+ E +++ + + P+ + + +I+ + +
Sbjct: 160 PAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKK 218
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSY 159
L+ A+ + + M +V T ++ TL++ + ++ + ++F+ M + P A S
Sbjct: 219 LDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSV 278
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL++G +RR +A ++F EM R + PT+VT+ TL+ GL ++ +A++L M+
Sbjct: 279 LILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLD 338
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL 247
P+ + LI LC ++ A
Sbjct: 339 QVPA-PNMFTYEILISSLCKTDQVEEAF 365
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I+ L + +E ++L ++ D VP I+ ++S RA L+ A ++
Sbjct: 344 NMFTYEILISSLCKTDQVEEAFKLLSAMR-DKGFVPSLKIWEVLLSRLARAGRLDDAFEL 402
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ EMS N Q+ V S N LL+ +L G +D D Q+ + + PD +Y+ L+ G
Sbjct: 403 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCW 462
Query: 169 SRRLEDAWKVFDEMLK 184
+ + A K+ +E+++
Sbjct: 463 QGKADQARKLVEELVR 478
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDAC 157
+AR A ++F EM + TV ++NTLL +L+ K+ D M + ++++ +P+
Sbjct: 287 KARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMF 346
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y IL+ + ++E+A+K+ M + P+L + L+ L R+D+A +L ++M
Sbjct: 347 TYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEM 406
Query: 218 MRV----------------------------------YNVKPDAQVFASLIKGLCAVGEL 243
R+ + PD + L+ GLC G+
Sbjct: 407 SRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKA 466
Query: 244 SLALGFKEEMVRN 256
A EE+VR+
Sbjct: 467 DQARKLVEELVRD 479
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 37/236 (15%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
I KL A + + + I+ ++K+ P+ C +I + ++ + D M
Sbjct: 1 IRKLVEADLVAQAEAIVEEMKY-AGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAG 59
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ +N L++ + G + + M ++ +P+ SYNI++ G +R +E A
Sbjct: 60 LFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALA 119
Query: 178 -----------------------------------VFDEMLKRRLQPTLVTFGTLIYGLC 202
VF EM + +P +V F L+ GL
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLW 179
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ EA +L M KPD + ++I GLC +L A+ E M + +
Sbjct: 180 RARKIHEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDV 234
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHHKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLLIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + P ++NI++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGNEPTRHTFNIMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V + AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDRVDDALRLVEEM 246
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P+ + + +I Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 IMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G ++++ +A + EM+++ + PT + F LI G
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAQKMSEARSILKEMVEKYITPTDNSIFLRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ + ++ I
Sbjct: 301 QCKAGDLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAGQYDQAVKLLDRLIEKDI 357
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ I+ +E ++ ++ V+P + F ++ + ++ A V
Sbjct: 267 NVFTYNSIVHGFCNLGQLNEATRLFKEMV-GRDVMPNTVTFTILVDGLCKEGMVSEARLV 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M+ V+ + ++N L++ ++ +F+IM K +P A SYNIL++G
Sbjct: 326 FETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCK 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
SRR+++A + EM + L P VT+ TL+ GLC R EAL L ++M Y P+
Sbjct: 386 SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCS-YGPHPNLV 444
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ L+ G C G L AL + M K+E
Sbjct: 445 TYVILLDGFCKHGHLDEALKLLKSMKEKKLE 475
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 88/175 (50%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F + + + + + + ++M F V V S N L+N + +D +
Sbjct: 91 PSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSV 150
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M K + PDA ++N L++G ++++A ++F+EM+KR +P ++++ T+I GLC
Sbjct: 151 LGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCK 210
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
A+ + + M + KP+ ++++I LC ++ A+ F EMV I
Sbjct: 211 TGNTSMAVDVFKKMEQ-NGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGI 264
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P I + VI+ + A+ VF +M + V +++T+++++ + D M
Sbjct: 196 PNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEF 255
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++E+ + P+ +YN ++HG +L +A ++F EM+ R + P VTF L+ GLC
Sbjct: 256 LSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCK 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E V EA +L + M V+PD + +L+ G C
Sbjct: 316 EGMVSEA-RLVFETMTEKGVEPDISTYNALMDGYC 349
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 100/209 (47%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I +++ DE + +L ++ H + P+ + + ++ + + AL +F EM
Sbjct: 376 YNILINGYCKSRRMDEAKSLLAEMYHKA-LNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
S+ + ++ LL+ G +D L + M EK + P+ Y IL+ G ++ +L
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKL 494
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A ++F ++ +P + T+ +I GL E DEA L M P++ +
Sbjct: 495 EVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRK-MEDDGFLPNSCSYNV 553
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I+G + S A+ +EMV + ++
Sbjct: 554 MIQGFLQNQDSSTAIRLIDEMVGKRFSVN 582
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 18/181 (9%)
Query: 22 PKLALQLFK---NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
PK AL LFK + P+PN L+ Y +++ + DE ++L +K
Sbjct: 424 PKEALNLFKEMCSYGPHPN-------------LVTYVILLDGFCKHGHLDEALKLLKSMK 470
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ ++ P + + +I A LE A ++F ++ + ++++ ++ +L G
Sbjct: 471 -EKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529
Query: 139 DRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D DLF+ ME P++CSYN+++ G + ++ A ++ DEM+ +R L TF L
Sbjct: 530 DEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQML 589
Query: 198 I 198
+
Sbjct: 590 L 590
>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
Length = 478
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
R RL E AL +F EM + TV ++ T+++ + G D +F M + VSP+
Sbjct: 210 RGRLAE-ALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLV 268
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+ L+ G R A ++ D M+K + P ++T+ ++I GLC E + EA+++ D
Sbjct: 269 TYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEIL-DR 327
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
MR+ KPDA +F LI GLC G A + +EMV IE
Sbjct: 328 MRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIE 369
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 124/296 (41%), Gaps = 43/296 (14%)
Query: 2 NKAKPTSPFRLAS-----LLRLQKDPKLALQLFKN---------PNP-NPNNTEAQPLKP 46
N P P L + L+R ++DP+ AL +F P+P P+ L
Sbjct: 5 NSTPPKWPKTLTADHLHRLVRAERDPRRALAIFDGATAAASTSAPDPITPSLATVSLLTS 64
Query: 47 FRYNLLHYDLIITKLGRAK------------------MFDEVQQILHQLKHDTRVVPEEI 88
+ H L + L R++ F + L L H R P ++
Sbjct: 65 RLASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAAL-HLFRSAPSDL 123
Query: 89 IFCNVISFYGR--ARLLEH-----ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ Y A L+ H A + +M + T ++N LL A + +
Sbjct: 124 ALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCS-DAAAHI 182
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D ++ PD CSYN ++ G RL +A +F EM+ + + PT+VT+ T+I+ L
Sbjct: 183 EDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWL 242
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E D+ALK+ +M R V P+ ++SLI GLC G + AL + M++ K
Sbjct: 243 AREGCFDDALKIFHEMGR-RGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEK 297
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 100/255 (39%), Gaps = 61/255 (23%)
Query: 25 ALQLFKN-PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83
AL+LF+N P P+ + Y+ II L R E + ++ +
Sbjct: 185 ALRLFRNIPKPD---------------VCSYNTIIDGLCRRGRLAEALDMFSEMVGKC-I 228
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK------ 137
P + + VI + R + AL++F EM V + ++++L++ + G+
Sbjct: 229 APTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALE 288
Query: 138 -IDRM-------------------------TDLFQIMEKYV----SPDACSYNILMHGCV 167
+DRM ++ +I+++ PDA + L+ G
Sbjct: 289 LLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLC 348
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFG-------TLIYGLCLELRVDEALKLKEDMMRV 220
+ R +A DEM+ ++P VT+ T++ LC + + A ++ + R
Sbjct: 349 DAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQS-TRT 407
Query: 221 YNVKPDAQVFASLIK 235
++ D F L++
Sbjct: 408 RSISTDPTTFHLLVE 422
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + Q++L ++ + ++ P + + +I+ + + A ++
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEML-ERKISPNVVTYNALINAFVKEGKFFEAAEL 345
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+DEM + ++N++++ ++D D+F +M K SPD ++ L+ G
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R++D ++ EM +R L VT+ TLI+G CL ++ AL L + M+ V PD
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 464
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ GLC G+L AL + M ++K+++DA
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + +I AK D+ ++LH++ +V + + +I + L AL +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 450
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
+M S V + + NTLL+ + GK+ ++F+ M+K V PD
Sbjct: 451 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ M
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P+ F +LI G C G + L EM R I DA
Sbjct: 571 GS-KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 614
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE A+ +F +M +V FN L+ A++ + D + L+Q ME K + D S+ I
Sbjct: 62 LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ +L A F ++ K L P +VTF TL++GLCL+ RV EAL L + R
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD F +L+ GLC G + A+ + MV N ++ D
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPD 216
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G KM D V +L +++ + + P +I+ +I + + +F EM +
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N ++ G+ L Q ++E+ +SP+ +YN L++ V + +A ++
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKPDAQVFASLIK 235
+DEML R + P +T+ ++I G C + R+D A EDM M PD F +LI
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA----EDMFYLMATKGCSPDVFTFTTLID 401
Query: 236 GLCAVGELSLALGFKEEMVRNKI 258
G C + + EM R +
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGL 424
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +F TLL+ + ++
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
DLF + PD ++ LM+G R+ +A + D M++ LQP +T+GT + G+C
Sbjct: 172 DLFH---QICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
AL L M + ++KP+ +++++I GLC G S
Sbjct: 229 KMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHS 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P I F ++ R + + ++ +M ++ + SF L+ +C K+
Sbjct: 75 SRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPF 134
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F + K + PD ++ L+HG + R+ +A +F ++ + P ++TF TL+
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMN 190
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E RV EA+ L + M+ ++PD + + + G+C +G+ AL +M
Sbjct: 191 GLCREGRVVEAVALLDRMVE-NGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM 243
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 37/238 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++L Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH-R 538
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+F M S KSF
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS-------KSF---------------- 575
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++N L++G + R++D ++F EM +R + + + TLIYG
Sbjct: 576 -----------SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ AL + ++M+ V PD +++ G + EL A+ E++ R ++E
Sbjct: 625 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ LEDA +F +ML+ R P+++ F L+ + R D + L + M R ++ D
Sbjct: 60 KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMER-KQIRCDIYS 118
Query: 230 FASLIKGLCAVGELSLAL 247
F LIK C+ +L AL
Sbjct: 119 FTILIKCFCSCSKLPFAL 136
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + Q++L ++ + ++ P + + +I+ + + A ++
Sbjct: 287 NIVTYNCMIGGFCISGRWSAAQRLLQEML-ERKISPNVVTYNALINAFVKEGKFFEAAEL 345
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+DEM + ++N++++ ++D D+F +M K SPD ++ L+ G
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCG 405
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R++D ++ EM +R L VT+ TLI+G CL ++ AL L + M+ V PD
Sbjct: 406 AKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMIS-SGVCPDIV 464
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ GLC G+L AL + M ++K+++DA
Sbjct: 465 TCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 14/225 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ + +I AK D+ ++LH++ +V + + +I + L AL +
Sbjct: 392 DVFTFTTLIDGYCGAKRIDDGMELLHEMPR-RGLVANTVTYNTLIHGFCLVGDLNAALDL 450
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------VSPDAC 157
+M S V + + NTLL+ + GK+ ++F+ M+K V PD
Sbjct: 451 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVL 510
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YNIL+ G + + +A ++++EM R + P +T+ ++I GLC + R+DEA ++ M
Sbjct: 511 TYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSM 570
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P+ F +LI G C G + L EM R I DA
Sbjct: 571 GS-KSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADA 614
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE A+ +F +M +V FN L+ A++ + D + L+Q ME K + D S+ I
Sbjct: 62 LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ +L A F ++ K L P +VTF TL++GLCL+ RV EAL L + R
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD F +L+ GLC G + A+ + MV N ++ D
Sbjct: 180 ---PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPD 216
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 62 GRAKMFDEVQ--QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
G KM D V +L +++ + + P +I+ +I + + +F EM +
Sbjct: 226 GMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIF 285
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+ ++N ++ G+ L Q ++E+ +SP+ +YN L++ V + +A ++
Sbjct: 286 PNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAEL 345
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKPDAQVFASLIK 235
+DEML R + P +T+ ++I G C + R+D A EDM M PD F +LI
Sbjct: 346 YDEMLPRGIIPNTITYNSMIDGFCKQDRLDAA----EDMFYLMATKGCSPDVFTFTTLID 401
Query: 236 GLCAVGELSLALGFKEEMVRNKI 258
G C + + EM R +
Sbjct: 402 GYCGAKRIDDGMELLHEMPRRGL 424
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Query: 89 IFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
I C++ SF + L AL F +++ + V +F TLL+ + ++
Sbjct: 112 IRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEAL 171
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
DLF + PD ++ LM+G R+ +A + D M++ LQP +T+GT + G+C
Sbjct: 172 DLFH---QICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMC 228
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
AL L M + ++KP+ +++++I GLC G S
Sbjct: 229 KMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHS 270
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R +P I F ++ R + + ++ +M ++ + SF L+ +C K+
Sbjct: 75 SRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPF 134
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F + K + PD ++ L+HG + R+ +A +F ++ + P ++TF TL+
Sbjct: 135 ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR----PDVLTFTTLMN 190
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
GLC E RV EA+ L + M+ ++PD + + + G+C +G+ AL +M
Sbjct: 191 GLCREGRVVEAVALLDRMVE-NGLQPDQITYGTFVDGMCKMGDTVSALNLLRKM 243
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 104/232 (44%), Gaps = 37/232 (15%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++L Y+++I L F E +++ ++ H
Sbjct: 480 KDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPH-R 538
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + ++I + L+ A Q+F M S KSF
Sbjct: 539 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGS-------KSF---------------- 575
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
SP+ ++N L++G + R++D ++F EM +R + + + TLIYG
Sbjct: 576 -----------SPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ AL + ++M+ V PD +++ G + EL A+ E++
Sbjct: 625 RKVGNINGALDIFQEMIS-SGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ LEDA +F +ML+ R P+++ F L+ + R D + L + M R ++ D
Sbjct: 60 KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMER-KQIRCDIYS 118
Query: 230 FASLIKGLCAVGELSLAL 247
F LIK C+ +L AL
Sbjct: 119 FTILIKCFCSCSKLPFAL 136
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 3/145 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A++VFD M V S+NTL+N ++D+ T LF+ M +K + P+ +YN
Sbjct: 330 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LMH C V RL+DA +F EM+ P L T+ L+ LC + +DEA+ L + +
Sbjct: 390 LMHXCHVG-RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLK-TIEGS 447
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD Q++ +I G+C GEL A
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAA 472
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 8/181 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ + + + ++M SF + V + N L+N+ ++R+
Sbjct: 67 PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFC---HLNRLGFA 123
Query: 145 FQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F ++ K + PD ++ L+ G V ++ DA +FD+M+ QP +VT+GTLI G
Sbjct: 124 FSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLING 183
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
LC + A++L M + N +PD V+ S+I LC +++ A +MV I
Sbjct: 184 LCKVGNTNAAIRLLRSMEQ-GNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISP 242
Query: 261 D 261
D
Sbjct: 243 D 243
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
+H + ++M + + V F+T+++A+ GKI D+ +M + V P+ +YN L
Sbjct: 261 KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 320
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + +++A KVFD M+ P ++++ TLI G C R+D+A L E+M +
Sbjct: 321 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ-KE 379
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ P+ + +L+ C VG L A+ EMV
Sbjct: 380 LIPNTVTYNTLMH-XCHVGRLQDAIALFHEMV 410
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y +++ L + DE +L ++ + + P+ I+ VI RA LE A +
Sbjct: 417 DLATYRILLDYLCKKSHLDEAMALLKTIE-GSNMDPDIQIYTIVIDGMCRAGELEAARDI 475
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F +SS ++ V+++ ++N + G +D LF M+ SPD C+YN + G +
Sbjct: 476 FSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQ 535
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
++ A ++ EML R + T L+ LC + ++D+++K
Sbjct: 536 NKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC-DDKLDQSVK 578
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 4/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ ++P + + N + L+ A+ +
Sbjct: 348 NVISYNTLINGYCKIQRMDKATYLFEEMCQK-ELIPNTVTY-NTLMHXCHVGRLQDAIAL 405
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ LL+ + +D L + +E + PD Y I++ G
Sbjct: 406 FHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCR 465
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F + + L+P + T+ +I GLC +DEA KL + M PD
Sbjct: 466 AGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFME-MDGNGCSPDGC 524
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ +GL E A+ +EM+ D
Sbjct: 525 TYNTITQGLLQNKEALRAIQLLQEMLARGFSAD 557
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ FR +++ Y +I L + E + ++ +P + + ++IS + R ++
Sbjct: 118 RGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMD 177
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ + + M+ V ++ TL+N ++D DL Q+ K ++P+ ++ LM
Sbjct: 178 EAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLM 237
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G RL DA + EM ++ PT+ T+ T++ G C +++EA K M+ +
Sbjct: 238 DGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF---MLEEMDC 294
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ F +I+GLC V S A+ EE R + D
Sbjct: 295 PPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 332
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +IT ++K D+ ++ QL P+ + + +I + L+ A+ +
Sbjct: 88 DIFTYTTLITGFCKSKKSDDALRVFEQLVARG-FRPDVVTYSCLIDGLCKEGRLKEAIDL 146
Query: 110 FDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F M S + ++N+L++ GK+D +L + M E SPD +Y LM+G
Sbjct: 147 FGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFC 206
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
RL+DA+ + ++M ++ L P +VTF +L+ GLC E R+ +A+ + +M R + P
Sbjct: 207 KLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRR-KSCSPTV 265
Query: 228 QVFASLIKGLCAVGELSLALGFK-EEM 253
+ +++ G C V +L A F EEM
Sbjct: 266 YTYNTILDGYCRVNQLEEARKFMLEEM 292
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 4/206 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ +I+ L +A+ E +L ++ + + +P+ + +I+ + +++ + AL+VF+
Sbjct: 55 VTYNSLISGLCKAERASEAYDLLEEMVY-SGCIPDIFTYTTLITGFCKSKKSDDALRVFE 113
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVS 169
++ + + V +++ L++ + G++ DLF M K S P+ +YN L+ G
Sbjct: 114 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 173
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++++A + + M + P +VT+ TL+ G C R+D+A L M R + P+
Sbjct: 174 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR-KGLTPNVVT 232
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
F SL+ GLC LS A+ EM R
Sbjct: 233 FTSLMDGLCRENRLSDAVHILGEMRR 258
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 7/145 (4%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAW 176
T ++N+L++ + K +R ++ + ++E+ V PD +Y L+ G S++ +DA
Sbjct: 53 TAVTYNSLISGLC---KAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDAL 109
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+VF++++ R +P +VT+ LI GLC E R+ EA+ L M++ + P+ + SLI G
Sbjct: 110 RVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISG 169
Query: 237 LCAVGELSLALGFKEEMVRNKIEMD 261
C +G++ A+ E M D
Sbjct: 170 FCRMGKMDEAMNLLERMAETGSSPD 194
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 3/182 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
D VP + + ++IS +A A + +EM + ++ TL+ K
Sbjct: 46 QDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS 105
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGT 196
D +F Q++ + PD +Y+ L+ G RL++A +F M+K P VT+ +
Sbjct: 106 DDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNS 165
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
LI G C ++DEA+ L E M PD + +L+ G C + L A +M R
Sbjct: 166 LISGFCRMGKMDEAMNLLERMAET-GSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 224
Query: 257 KI 258
+
Sbjct: 225 GL 226
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 88/184 (47%), Gaps = 2/184 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ + D+ +L+Q+ + P + F +++ R L A+ +
Sbjct: 194 DVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG-LTPNVVTFTSLMDGLCRENRLSDAVHI 252
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM + TV ++NT+L+ +++ F + E P+ S+NI++ G
Sbjct: 253 LGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARK-FMLEEMDCPPNVVSFNIMIRGLCKV 311
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R +A ++ +E +RR P +V + T+I LC E +VDEA ++ M+ P++
Sbjct: 312 NRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSIT 371
Query: 230 FASL 233
+++
Sbjct: 372 YSTF 375
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 107/193 (55%), Gaps = 9/193 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + +IL Q+ P + + ++ + + + ++ A+
Sbjct: 291 NVVTFNMLISFLCRRGLVEPAMEILDQIPK-YGCTPNSLSYNPILHAFCKQKKMDRAMAF 349
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++ G
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 409
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + E+A ++ +EM+ + LQP ++T+ T+ GLC E R++EA+K +DM ++P
Sbjct: 410 AGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDM----GIRP 465
Query: 226 DAQVFASLIKGLC 238
+ ++ +++ GLC
Sbjct: 466 NTVLYNAILLGLC 478
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A P++P Y Y+ +I L GR + + + + L+ VP+ + + ++ +
Sbjct: 145 AMPMEPDTYT---YNTLIRGLCGRGRTDNALAVLDDMLRRG--CVPDVVTYTILLEATCK 199
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
+ A+++ DEM + ++N ++N + G++D + + + Y P+ S
Sbjct: 200 RSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVS 259
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNI++ G + R EDA K+ EM ++ P +VTF LI LC V+ A+++ D +
Sbjct: 260 YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEIL-DQI 318
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Y P++ + ++ C ++ A+ F E MV + D
Sbjct: 319 PKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPD 361
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
LE A+++ + M+ L+ + G+ + E PD SYN +
Sbjct: 72 LEEAIRLVESMAGLE-PSAAGPCAALIKKLCASGRTAEARRVLASCE----PDVMSYNAM 126
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G V+ +L++A ++ M ++P T+ TLI GLC R D AL + +DM+R
Sbjct: 127 VAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGC 183
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V PD + L++ C A+ +EM
Sbjct: 184 V-PDVVTYTILLEATCKRSGYKQAVKLLDEM 213
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S R +A +V +P ++++ ++ G C+ ++D A +L M ++PD
Sbjct: 102 ASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAM----PMEPDT 152
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
+ +LI+GLC G AL ++M+R
Sbjct: 153 YTYNTLIRGLCGRGRTDNALAVLDDMLR 180
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 114/215 (53%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN--VISFYGRARLLEHAL 107
N + Y++++ L + ++ ++++ + R+ E ++ +I Y +E A
Sbjct: 236 NDVTYNVLVNGLSHSGEMEQAKELIQDM---LRLGLEVSVYTYDPLIRGYCEKGQIEEAS 292
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
++ +EM S TV ++NT++ + G++ L +M K + PD SYN L++G
Sbjct: 293 RLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGY 352
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +A+ +F E+ R L P++VT+ TLI GLC +D A++LK++M++ + PD
Sbjct: 353 TRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIK-HGPDPD 411
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F + ++G C +G L +A +EM+ ++ D
Sbjct: 412 VFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPD 446
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 110/229 (48%), Gaps = 35/229 (15%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+V + ++ + + + P + + ++ + + +++ ALQ+ +M + ++N L
Sbjct: 184 DVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVL 243
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N + G++++ +L Q M + + +Y+ L+ G ++E+A ++ +EML R
Sbjct: 244 VNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGA 303
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDM------------------------------ 217
PT+VT+ T++YGLC RV +A KL + M
Sbjct: 304 VPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFL 363
Query: 218 ----MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+R ++ P + +LI GLC +G+L +A+ K+EM+++ + D
Sbjct: 364 LFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDV 412
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 114/230 (49%), Gaps = 8/230 (3%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P R A + R+ + KL +P+ E + F +L+ Y++ I L +
Sbjct: 445 PDRFAYITRIVGELKLG-----DPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 499
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +++ ++ ++ +VP+ + + ++I + A L A +F EM S + +V ++ L
Sbjct: 500 EASELVKKMLYNG-LVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVL 558
Query: 129 LNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+++ G++ + F++ EK V P+ +YN L++G R+++ A+ F EM + +
Sbjct: 559 IHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGI 618
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
P T+ LI C EAL+L +DM+ ++PD+ SL+K L
Sbjct: 619 SPNKYTYTILINENCNLGHWQEALRLYKDMLD-REIQPDSCTHRSLLKHL 667
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YN + Y L K GR + +++L + + ++P+ + + +I Y R + A
Sbjct: 310 YNTIMYGL--CKWGRV---SDARKLLDVMV-NKNLMPDLVSYNTLIYGYTRLGNIGEAFL 363
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHG 165
+F E+ ++ +V ++NTL++ + G +D R+ D ++++ PD ++ + G
Sbjct: 364 LFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKD--EMIKHGPDPDVFTFTTFVRG 421
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYN 222
L A ++FDEML R LQP + T I G EL++ + A ++E+M+
Sbjct: 422 FCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVG---ELKLGDPSKAFGMQEEML-ARG 477
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + I GL +G L A ++M+ N + D
Sbjct: 478 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 516
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVLMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P +N+++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLSEGIEPTRHXFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G ++DEA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+E A + F++M S + V ++NT++N K+D F M+ + + P +Y
Sbjct: 166 VETANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTT 225
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G V +++DA ++ +EM ++P +T+ TL+ GLC ++ EA + ++M+ Y
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKY 285
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F LI C G L A + M+R + +A
Sbjct: 286 MAPTDNSIFXRLISSQCKTGNLDAAADVLKAMIRLSVPTEA 326
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + ++ A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ Y + P+A +Y+ L+ G + ++ +A + EM+ + + PT + F LI
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYMAPTDNSIFXRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKTGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKAGQHDKAVKLLDKLIEKDI 357
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFDE++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD +Y++L++G ++ DA ++F EM+ L P VTF TLI
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C +D A++ ++M+R PD + +LI GLC G+L A +EM ++
Sbjct: 250 GHCKTGSIDLAMETYKEMLR-QGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + + A ++F EM + +F TL++ G I
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSI 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + + +++ + SPD +YN L++G L+ A + DEM + L+P +T+ TL
Sbjct: 258 DLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
I G C E ++ AL ++ M++ N++ D + +LI GLC G+
Sbjct: 318 IDGSCKEGDLETALYYRKRMIKE-NIRLDDVAYTALISGLCREGQ 361
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + ++ ++ ++ + +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMNDANELFGEMIGNG-LVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++ + EM + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 TGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A M+K ++ V + LI GLC E + +A K+ +M+
Sbjct: 314 YTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 374 SV-GLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRD 410
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N G +D L M V PD SY++L++
Sbjct: 106 AQSVFDAITKWGLRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLIN 165
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C + RVD A+++ + M+ ++
Sbjct: 166 GLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLS-QSLL 224
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +LI GLC G+L A +EM
Sbjct: 225 PDLITYNTLIYGLCKKGDLKQANDLIDEM 253
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 151 SGVQPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDL 210
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++ ++ + + PD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 211 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTLID 270
Query: 200 GLCLELRVDEALK 212
G C E +D A +
Sbjct: 271 GCCKEGNLDTAFE 283
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G ++ L M V PD +Y++L++
Sbjct: 159 AQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN 218
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 219 GLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 277
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 278 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXD 314
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ Y R L ++ M + VQ V +++ L+N + K+D +L
Sbjct: 173 PSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 232
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +K D + +LI G C G+L A ++ M++ I +D
Sbjct: 293 KGDLKQAHDLI-DEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLD 349
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 204 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDL 263
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + L+ +T+ TLI
Sbjct: 264 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLID 323
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 324 GCCKEGDLDAAFEHRKRMIQ-ENIRLDDVAYTALISGLCQEG 364
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NILMH + A VFD + K L+P++V++ TL+ G ++E +LK M+
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD ++ LI GLC ++ A +EM+
Sbjct: 203 -ASGVQPDVYTYSVLINGLCKESKMDDANELFDEML 237
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Query: 60 KLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
K GR + E+ +Q+L Q ++P+ I + +I + L+ A + DEMS +
Sbjct: 257 KNGRVDLAMEIYKQMLSQ-----SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGL 311
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ ++ TL++ G +D + + ++++ + D +Y L+ G R DA K
Sbjct: 312 KXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEK 371
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ EML L+P T+ +I C + V + KL +DM R
Sbjct: 372 MLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQR 413
>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 109/203 (53%), Gaps = 13/203 (6%)
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
G KM+ + IL ++K D + P E+ F +I + + + A++VF EM+ V+
Sbjct: 192 GLVKMY-KADAILKEMKADG-ICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPN 249
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V ++N+L+N + GK++ T L Q++ + P+ ++N L++G ++ ++ A ++F+
Sbjct: 250 VVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFE 309
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M K+R+ P + T+ LI C + +++A L M+ V PD + LI GLC
Sbjct: 310 DMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLG-KGVYPDVSTYNCLIVGLCRK 368
Query: 241 GELSLALGFKEEMVRNKI-EMDA 262
G+L E RN++ EMD
Sbjct: 369 GDL--------EGARNRVSEMDT 383
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 122/272 (44%), Gaps = 30/272 (11%)
Query: 5 KPTSPFRL-ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
K T+P L LL D L L+ F T +Q ++L ++ L
Sbjct: 57 KSTNPIALLHQLLTSGADSDLTLRYF---------TWSQKELKLSHSLELTFRMLHSLAY 107
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNV---------------ISFYGRARLLEHAL- 107
AK + +++ L + + P IF + I + A+ L+ L
Sbjct: 108 AKKYSKIRSFLDNCVQNDKNYPVSFIFHAISVSGDSFCANSIIVDILVWADAKNLKTRLG 167
Query: 108 -QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
+ F S + ++ +V S N L++ ++ K D + L ++ + P+ ++NIL+ G
Sbjct: 168 FEAFKRASDYGLKLSVTSCNPLMSGLVKMYKADAI--LKEMKADGICPNEVTFNILIDGF 225
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + A KVF EM ++ ++P +VT+ +LI GLC +V+EA L++ M+ ++P+
Sbjct: 226 CNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSC-LEPN 284
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+L+ G C + A E+M + +I
Sbjct: 285 IITHNALLNGFCKNKMVKQAGELFEDMPKQRI 316
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S N LM G V ++ A + EM + P VTF LI G C + V A+K+ +M
Sbjct: 185 SCNPLMSGLV---KMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEM 241
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R VKP+ + SLI GLC G+++ A +++MV + +E
Sbjct: 242 NR-QGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLE 282
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ ++ + KM + ++ + R+ P + +I Y + +E A +
Sbjct: 284 NIITHNALLNGFCKNKMVKQAGELFEDMPKQ-RITPNVTTYNILIDAYCKDENMEDAFAL 342
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+ M V V ++N L+ + G ++ + M+ K++ D +YNILM
Sbjct: 343 YRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCN 402
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
++ ++ DEM K+ L+P+ +T+ T+I G E
Sbjct: 403 KGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKE 438
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 8/217 (3%)
Query: 39 TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98
AQP +++ Y +I L + D + ++ P + ++
Sbjct: 40 AHAQP------DVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC 93
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+ L+ A V E + V ++NTL+ A+ G++D F Q+ E+ P
Sbjct: 94 KQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLV 153
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S+N ++ G +RRL DA +VF+EM+ R P LVT+ +I GLC ++DEA +L D
Sbjct: 154 SFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLL-DR 212
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M +PD + L+ G A G L ALG MV
Sbjct: 213 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 249
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 6/205 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L+ ++ IIT L RA+ + ++ +++ D P + + VI ++ L+ A Q+
Sbjct: 151 TLVSFNAIITGLCRARRLADALEVFNEMI-DRDFHPNLVTYSVVIDGLCKSDQLDEAQQL 209
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D M S + + ++ L+ G++D L + M + PD +Y +++
Sbjct: 210 LDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCK 269
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA ++F E++ + P +VT+ LI G C RVDE K+ MR +P+
Sbjct: 270 VGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV----MREMACRPNVV 325
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I GL V A G EM
Sbjct: 326 TYNTMIWGLSMVDRNEEAYGMFREM 350
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 99 RARLLEHALQVFD-EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPD 155
R + AL+ FD + + Q V S+ TL+N + G++D DLF+ M P+
Sbjct: 22 RCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPN 81
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A +YN L+ G RL+ A V E KR P +VT+ TL+ L RVDEAL
Sbjct: 82 AFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFT 141
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M V P F ++I GLC L+ AL EM+
Sbjct: 142 QMTEEGYV-PTLVSFNAIITGLCRARRLADALEVFNEMI 179
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ +I++ G R+ A + FD L+ QP +V++ TLI GLC RVD A L
Sbjct: 12 TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
M+ +P+A + +L+ GLC L A
Sbjct: 72 MVAAGGCRPNAFTYNALVDGLCKQDRLDAA 101
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 127/253 (50%), Gaps = 17/253 (6%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
S F + +L+ QK+ LAL+ F A+ + +++++ Y +I +GRA+ F
Sbjct: 33 SAFHINEVLKHQKESGLALKFFD---------WAKEQEGYKHDVCTYTTMIGIMGRARNF 83
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+ ++L +++ + P + + +I YGRA L A+++F +M ++ T
Sbjct: 84 EACSRLLQEMRREG-CEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCT 142
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L++ G D D++Q M++ PD +Y++++H + ++ +A K+F+EM++R
Sbjct: 143 LVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERG 202
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P+LVT+ +I A+KL DM PD ++ +++ L +G L A
Sbjct: 203 FAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDA-GFHPDRVTYSIMMEVLGQIGHLQEA 261
Query: 247 LGFKEEMVRNKIE 259
E++ N++E
Sbjct: 262 -----ELMFNEME 269
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/236 (19%), Positives = 95/236 (40%), Gaps = 38/236 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I GRA E +I +Q++ + P+ + +C ++ + +A ++A+ ++ +M
Sbjct: 105 YNRLIHAYGRANFLGEAMRIFYQMQEEG-CSPDRVTYCTLVDLHSKAGFHDNAMDMYQKM 163
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----------------------EKY 151
Q +++ +++ + GK+ LF+ M Y
Sbjct: 164 QQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNY 223
Query: 152 V--------------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
V PD +Y+I+M L++A +F+EM + P +G +
Sbjct: 224 VMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVM 283
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + AL+ + M+ + P+ Q+ SL+ + + LA G E M
Sbjct: 284 VDMWGKARNAERALEWYQKMLDS-GLTPNVQISNSLLGSYLRMQQFDLAFGVIETM 338
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ LG+ E + + ++++ VP+ I+ ++ +G+AR E AL+ + +M
Sbjct: 245 YSIMMEVLGQIGHLQEAELMFNEME-QAGWVPDAPIYGVMVDMWGKARNAERALEWYQKM 303
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+ V+ N+LL + L + D + + M+ + + P ++ IL+ C S
Sbjct: 304 LDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTAS 360
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 23 KLALQLFKNPNPNPNNTEAQPL--KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
KL LQL + + + Q + K + + + +++ L R+ ++ +++L ++K +
Sbjct: 12 KLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMK-E 70
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
VP++ I+ +IS Y +A+ A + EM + TV ++ +++ + K +R
Sbjct: 71 MGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLC---KAER 127
Query: 141 MTDLFQIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
D ++++ K SP+ +YN+++ G R+L++A K+ +EM R P +VT+ +
Sbjct: 128 TRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 187
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
I GLC RVDEA K M V PD + ++I GLC G+L A
Sbjct: 188 FIKGLCKCDRVDEARKFLARM----PVTPDVVSYTTVINGLCKSGDLDSA 233
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 12/220 (5%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P +++ Y +I L ++ D ++L + + P+ + + ++I + + +E
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS-NRGCTPDVVTYSSLIDGFCKGGEVER 267
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A+ + D M + + ++N+LL A+ G I + D+ ME+ +PD SYN +
Sbjct: 268 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 327
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY----------GLCLELRVDEALKLK 214
G + R++ A VFD M++R P ++ LI GLC R DEA L
Sbjct: 328 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALF 387
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++ +PD + ++ C ++ AL ++M+
Sbjct: 388 SKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQML 427
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 4/212 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y I+ L +A+ + ++L +++ D P + ++ R L+ A ++
Sbjct: 111 TVVTYTNIVDGLCKAERTRDAVKLLDEMR-DKGCSPNIYTYNVIVEGLCEERKLDEAKKM 169
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+EM+ V ++N+ + + C ++D M V+PD SY +++G S
Sbjct: 170 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP--VTPDVVSYTTVINGLCKS 227
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L+ A ++ D M R P +VT+ +LI G C V+ A+ L + M+++ +P+
Sbjct: 228 GDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKL-GCRPNMVA 286
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SL+ L +G + A EM R D
Sbjct: 287 YNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 318
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 102/221 (46%), Gaps = 15/221 (6%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y+ ++ L R + + +L +++ P+ + + I +A ++ A
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMER-RGFTPDVVSYNACIDGLCKAERVKKAK 339
Query: 108 QVFDEMSSFNVQRTVKSFN----------TLLNAMLTCGKIDRMTDLFQ--IMEKYVSPD 155
VFD M S++ LL+ + G+ D LF + EK PD
Sbjct: 340 AVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPD 399
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
YN+++ R+++ A ++ +ML++ +VT+ L++GLC++ R+ +A +
Sbjct: 400 VFFYNVMLDSHCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLL 458
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M+ + PD + +L+ +C G+ + AL EE V+
Sbjct: 459 TMVDEGFI-PDFVTYGTLVDAMCKCGKSAAALELFEEAVKG 498
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
++L Y +++ L + FDE + ++ D ++ ++ F NV + + + R ++ ALQ
Sbjct: 363 DILLYTVLLDGLCKGGRFDEACALFSKVL-DEKICEPDVFFYNVMLDSHCKRRQIDKALQ 421
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMH 164
+ +M N V ++N L++ + DR++D L ++++ PD +Y L+
Sbjct: 422 IHKQMLEKNCCNVV-TWNILVHGLCV---DDRLSDAETMLLTMVDEGFIPDFVTYGTLVD 477
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ A ++F+E +K P +VT+ LI GL E +EA
Sbjct: 478 AMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEA 523
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN L+ R + A VF EM+ + QP TF L+ GLC ++++A KL M
Sbjct: 9 TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ V PD ++ +LI G + A F EMV+N
Sbjct: 69 KEMGCV-PDDAIYNALISGYSKAKDFGQAFKFLAEMVKN 106
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 22/243 (9%)
Query: 30 KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
++P P P L P YN L ++ RA DEV ++ L P +
Sbjct: 33 RSPFP-PAGAVPATLTPTAYNAL-----MSAYSRAGRHDEVLRLFFSLPF----APTAPL 82
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
F +IS + AL F ++S + T +F LL ++ F M
Sbjct: 83 FTTLISSLAASGSKSAALDAFSLLAS-GIGPTTSAFTALLKSIDAASSESVYRAFFATMA 141
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+PDA +YN L+ S+RL++AW V D ML+ + PT+ ++ +++G C + RV
Sbjct: 142 AMECAPDAATYNCLIWILCDSQRLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVL 201
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL---------SLALGFKEEMVRNKIE 259
EA +L + M++V PD ++ LI+GLC VGE S A G+ V I
Sbjct: 202 EAERLLDTMIQV-GCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIY 260
Query: 260 MDA 262
M A
Sbjct: 261 MSA 263
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 15/215 (6%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ---ILHQLKHDTRVVPEEIIFCNV 93
+EA+ P N + Y++ ++ L R DE + ++H + I+F
Sbjct: 243 GESEAKGWTP---NAVTYNIYMSALCRMGFLDEAFRQVDVMHSRGVYMTIETVNILF--- 296
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV 152
R + AL + + N V +NT+++ + G I R+ L +++K +
Sbjct: 297 -DCLCRGSMFSEALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVLKLLVDLVKKGI 355
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD S+ I + + + + A + D + ++ +V F TLI+GLC+ + E L+
Sbjct: 356 GPDMFSFTIAIRSLCRAGKFKVAKCLLD---NKGIEYDVVAFNTLIHGLCMAGELHEMLQ 412
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
DM NV P+ +I C E A+
Sbjct: 413 TYMDMTS-RNVFPNNFTIGMVIDSFCKNREFGAAI 446
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 5/210 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y+ +I L ++ DE +L + + V P + ++ Y + R+LE A ++ D
Sbjct: 152 YNCLIWILCDSQRLDEAWGVLDSML-EVGVCPTVRSYTAILHGYCKQGRVLE-AERLLDT 209
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M V S++ L+ + G+ ++ + E K +P+A +YNI M
Sbjct: 210 MIQVGCAPDVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGF 269
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L++A++ D M R + T+ T L LC EAL L E + N D +
Sbjct: 270 LDEAFRQVDVMHSRGVYMTIETVNILFDCLCRGSMFSEALTLLECSEEL-NWDVDVFCYN 328
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ LC G+++ L ++V+ I D
Sbjct: 329 TMMSRLCDTGDIARVLKLLVDLVKKGIGPD 358
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 216
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 217 GLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLS-QSLL 275
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPD 312
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 202 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 261
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++ ++ + + PD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 262 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 321
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N+ D + +LI GLC G
Sbjct: 322 GCCKEGDLDTAFEHRKRMIQE-NIXLDDVAYTALISGLCQEG 362
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 201 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 256
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 257 GRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITY 316
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E R +A K+ +M+
Sbjct: 317 TTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLS 376
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KP+ + + +I C G++ +EM R+
Sbjct: 377 V-GLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRD 412
>gi|357131125|ref|XP_003567192.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 457
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+ ++ ++T RAK FD + ++ VVP + +IS + L AL V
Sbjct: 172 MTFNAVLTAYSRAKEFDALATAFQEIPASHPLVVPSVYSYNILISALCQKPALSAALNVV 231
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
M V SFNTLLN G++D ++++M E+ + PD SYN + G V
Sbjct: 232 TLMEKCGVLPDNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLRGLVAE 291
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+EDA V + M K +P V++ LI G C R+++A KL + +++ P+
Sbjct: 292 GRIEDAVAVVERMEKEGPKPDTVSYNELIRGYCSAGRLEDAKKLYDGLVK-NECAPNKGT 350
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +L+ L GEL AL + E+ + I+
Sbjct: 351 YETLLPRLLQAGELDCALRYCHELFSSNIK 380
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 114/228 (50%), Gaps = 44/228 (19%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ L A+ +++ ++++ ++ H P + F +ISF R L+E A++V
Sbjct: 270 NTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG-CPPNVVTFNMLISFLCRRGLVEPAMEV 328
Query: 110 FDEMSSFN-------------------------------VQRT----VKSFNTLLNAMLT 134
++M + V R + S+NTLL A+
Sbjct: 329 LEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCR 388
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G++D +L Q+ +K SP SYN ++ G + + ++A ++ DEM + LQP ++T
Sbjct: 389 NGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIIT 448
Query: 194 FGTLIYGLCLELRVDEALKL---KEDMMRVYNVKPDAQVFASLIKGLC 238
+ T+ GLC E R++EA++ +DM ++P A ++ +++ GLC
Sbjct: 449 YSTIASGLCREDRIEEAVRTFCKVQDM----GIRPTAALYNAILLGLC 492
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 8/214 (3%)
Query: 43 PLKPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
P++P Y Y+ +I L GR + + + + + +P+ + + ++ +
Sbjct: 161 PVEPDAYT---YNTLIRGLCGRGRTSNALAVLEDMFRRG--CLPDVVTYTILLEATCKRS 215
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
+ A+++ DEM + ++N +LN + G+++ + + + Y P+ SYN
Sbjct: 216 GYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYN 275
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I++ G + R EDA K+ +EM + P +VTF LI LC V+ A+++ E M +
Sbjct: 276 IVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ- 334
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y P++ + L+ C ++ A+ F E MV
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMV 368
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ + + ++ + L L P + + V+ A E A ++
Sbjct: 235 DIVTYNVVLNGICQEGRVEDAMEFLKNLP-SYGCEPNTVSYNIVLKGLFTAERWEDAEKL 293
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+EM+ V +FN L++ + G ++ ++ + M +Y +P++ SYN L+H
Sbjct: 294 MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCK 353
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A + + M+ R P +V++ TL+ LC VD A++L ++ P
Sbjct: 354 QKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQ-LKDKGCSPVLI 412
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I GL G+ AL +EM ++ D
Sbjct: 413 SYNTVIDGLTKAGKTKEALELLDEMTSKGLQPD 445
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V +N ++ G++D L M V PDA +YN L+ G R +A V ++
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADMP--VEPDAYTYNTLIRGLCGRGRTSNALAVLED 191
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M +R P +VT+ L+ C +A+KL D M PD + ++ G+C G
Sbjct: 192 MFRRGCLPDVVTYTILLEATCKRSGYKQAMKLL-DEMHDKGCAPDIVTYNVVLNGICQEG 250
Query: 242 ELSLALGF 249
+ A+ F
Sbjct: 251 RVEDAMEF 258
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S R DA +V P ++ + ++ G C ++D A +L DM V+PDA
Sbjct: 116 ASGRTADARRVLAAS-----GPDVMVYNAMVAGYCGAGQLDAARRLVADM----PVEPDA 166
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
+ +LI+GLC G S AL E+M R
Sbjct: 167 YTYNTLIRGLCGRGRTSNALAVLEDMFR 194
>gi|338762831|gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]
Length = 417
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 27/256 (10%)
Query: 4 AKPT--SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
KP+ S R S LR DP AL+++ + +PN PL RY + + +L
Sbjct: 36 TKPSTISTSRAKSQLRYVYDPDKALEIYSSVSPN----YTSPLSS-RYTQ---EYTVRRL 87
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
++ F +++ L K+D ++ +E ++I YG A + +HAL+ F+EM R+
Sbjct: 88 AKSHRFSDIESFLESHKNDPKIT-QEPFLSSLIRSYGLAGMFDHALKTFNEMDDLGTPRS 146
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
SFN LL+A + R +LF ++ ++Y +SPD SY L+ E A +
Sbjct: 147 TVSFNALLSACNSSKNFGRAPELFDEVPQRYGLSPDKFSYGNLIKAYCEMGSPESALERL 206
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK------P 225
EM ++ ++ T VTF T+++ + + +EA ++ +M++ YNV+
Sbjct: 207 KEMEEKGIEITAVTFTTIMHSFYKKGKNEEAERVWSEMVKRGCPIDVGAYNVRIMHIHGE 266
Query: 226 DAQVFASLIKGLCAVG 241
D LI+ + + G
Sbjct: 267 DPDSVKGLIEEISSAG 282
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 6/212 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + ++ +++ +K F ++ ++ + P++ + N+I Y E AL+
Sbjct: 146 STVSFNALLSACNSSKNFGRAPELFDEVPQRYGLSPDKFSYGNLIKAYCEMGSPESALER 205
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI-LMHGCV 167
EM ++ T +F T++++ GK + ++ M K P D +YN+ +MH +
Sbjct: 206 LKEMEEKGIEITAVTFTTIMHSFYKKGKNEEAERVWSEMVKRGCPIDVGAYNVRIMH--I 263
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + +E+ L+P +++ L+ C +DEA K+ ED + KP+A
Sbjct: 264 HGEDPDSVKGLIEEISSAGLKPDTISYNYLMTSYCKSGMMDEAFKVYED-LEGNGCKPNA 322
Query: 228 QVFASLIKGLCAVGELSLALG-FKEEMVRNKI 258
F +LI LC FKE + +KI
Sbjct: 323 ATFRTLIFYLCKRQRFETGYKVFKESVAVHKI 354
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + + F+ V L ++ V + + + +I+ Y R L+E A Q+
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKG-VFADIVTYNTLINAYCREGLVEEAFQL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+ SS ++ + ++N +L + GK DR D L ++++ ++P+A +YN L+
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR 374
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A ++FDEM +R + P LV+F +LI L + +AL +M R + PD
Sbjct: 375 RDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNV 433
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G C G LS AL ++EM+ MD
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMD 466
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+ ++ ++ R E Q+I ++ V+P+ + F ++I R L AL
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMH 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
F EM + + L++ G + +M D +++ + D +YN ++G
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD--EMLARGCFMDVVTYNTFLNGL 477
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ DA +F+EM++R + P TF TLI G C + +D+AL L E M+R N+KPD
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT-NLKPD 536
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G C GE+ A ++M+R I
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 60 KLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
++GRAK ++D++ ++ D ++P+ I + V++ + + LL AL + D+M +
Sbjct: 552 EMGRAKELWDDM------IRKD--IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ + + NTL+ G + + + L +++ + PD+ SYN L+ G + LE A+
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +EM KR LQ ++T+ ++ G C E ++ EA ++ M+ + + PD ++SLI G
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI-GINPDGATYSSLINGH 722
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
+ + A F +EM++ + D
Sbjct: 723 VSQDNMKEAFRFHDEMLQRGLVPD 746
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT------ 134
+ +VP+ +I+ +I + R L AL++ DEM + V ++NT LN +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485
Query: 135 ---------------------------C--GKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
C G +D+ +LF+ M + + PD +YN L+
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + + A +++D+M+++ + P +++GT++ G C + EAL L + M+ ++
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE-KGIR 604
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+ +LIKG C G++ A + +M+ N I D+
Sbjct: 605 PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDS 642
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVF 110
L YDL++ +AK E + L+ + V I CN ++ R ++ A +++
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLGGLVRTGWVDLAWEIY 245
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVS 169
E+ ++ V + N ++NA+ K + + ME K V D +YN L++
Sbjct: 246 GEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+E+A+++ + R ++P L+T+ ++YGLC + D A + +M+++ + P+A
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL-GLTPNAAT 364
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +L+ +C + A +EM R +
Sbjct: 365 YNTLLVEICRRDNILEAQEIFDEMSRRGV 393
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 98/190 (51%), Gaps = 3/190 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ ++ L + M E ++ + H V P + + ++ + ++ A++VFD M
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLE 173
+ V S+NTL+N +D+ LF+ M + ++P+ +YN L+HG RL+
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA +F EM+ R P LVT+ TL LC +D+A+ L + + N PD Q++ ++
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLK-AIEGSNWDPDIQIYTTI 461
Query: 234 IKGLCAVGEL 243
+ G+C GEL
Sbjct: 462 LDGMCRAGEL 471
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 7/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE--HAL 107
N++ + +I L + + E I ++ T+ + I+ N + +G +L E H
Sbjct: 209 NVVVFSTLIDSLCKDRQVTEAFNIFSEMI--TKGISPNIVTYNSL-IHGLCKLCEWKHVT 265
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ +EM + V + NT+++A+ G + D+ +M + V P+ +YN LM G
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ A KVFD M+ + ++++ TLI G C VD+A+ L E+M R + P+
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-QELTPN 384
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC VG L A+ EMV
Sbjct: 385 TVTYNTLIHGLCHVGRLQDAISLFHEMV 412
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P + F +++ + + L + +M SF + V + ++N++ ++D +
Sbjct: 68 PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +I++ PDA ++ L+ G V ++ +A +FD+M+ QP +VT+GTLI GLC
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
A++L M + N +P+ VF++LI LC +++ A EM+ I
Sbjct: 188 VGNTSAAIRLLRSMEQ-GNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + AL +FD+M Q V ++ TL+N + G L
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ME+ P+ ++ L+ R++ +A+ +F EM+ + + P +VT+ +LI+GLC
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
L +M+ + PD +++ LC G ++ A + M+ +E
Sbjct: 258 LCEWKHVTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ + P + + +I L+ A+ +
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQ-ELTPNTVTYNTLIHGLCHVGRLQDAISL 407
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ TL + + +D+ L + +E PD Y ++ G
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LEDA +F + + LQP + T+ +I+GLC + + EA KL +M + P+
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK-NGCSPNDC 526
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +G E + EEM+ +D
Sbjct: 527 TYNLITRGFLRNNEALRTIELLEEMLARGFSVD 559
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y + L + + D+ +L ++ + P+ I+ ++ RA LE A +
Sbjct: 419 DLVTYRTLSDYLCKNRHLDKAMALLKAIE-GSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +SS +Q V ++N +++ + G + + LF M K SP+ C+YN++ G +
Sbjct: 478 FSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 537
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+ ++ +EML R + T TL+ G+ + +D+++K
Sbjct: 538 NNEALRTIELLEEMLARGFSVDVST-TTLLVGMLSDDGLDQSVK 580
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV + Q++ + P+ + + +I+ YG+AR E AL VF+EM V+ T K++N
Sbjct: 296 YKEVSKTYDQMQR-AGLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN 354
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +D+ +F+ M + +PD CSY ++ V + +E A K F + +
Sbjct: 355 ILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 414
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GTLI G +++ ++ E+ M+V+ +K + ++ +++ +
Sbjct: 415 GFEPNVVTYGTLIKGYAKISNLEKMMEKYEE-MQVHGIKANQAIYTAMMDAYGKNKDFGS 473
Query: 246 ALGFKEEM 253
A+ + +EM
Sbjct: 474 AVFWFKEM 481
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 11/219 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ QP + ++ + + +++T G+ F++ +++ + H P I ++ YG+
Sbjct: 131 QTQPW--WDFSEMDFLMLVTAYGKQGDFNKAERVFGDM-HKKGYSPSVISHTALMEAYGK 187
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKY-VSPD 155
+ A VF M S + + ++ +L + K + F+ + EK + PD
Sbjct: 188 GKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPD 247
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++++++ + E A K+F M +R + + VT+ +L + E E K +
Sbjct: 248 QKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTVTYNSL---MSFETNYKEVSKTYD 304
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M R ++PD +A LI AL EEM+
Sbjct: 305 QMQRA-GLRPDVVSYALLINAYGKARREEEALAVFEEML 342
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 105/211 (49%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y II L + + D+ ++ H V P + +++ + + L A++
Sbjct: 232 NVVIYSSIIAALCKGQAMDKAMEV-HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M S V+ V ++++ ++ + G+ +F M ++ + PD +Y+ L+HG +
Sbjct: 291 LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAI 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L + +FD M++ +QP F TLIY + +VDEA+ L MR +KP+
Sbjct: 351 EGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM-LVFSKMRQQGLKPNCV 409
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++LI G C + + AL +EMV N +
Sbjct: 410 TYSTLINGYCKITRMENALALFQEMVSNGVS 440
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQ 108
N+ + +I+ L E ++LH + D +P + + VI + + A
Sbjct: 160 NVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYA 219
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
+ EM + V +++++ A+ +D+ ++ M K V+P+ +Y L+HG
Sbjct: 220 TYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFC 279
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +L +A K ++M ++P +VT+ + + LC R EA K+ + M++ +KPD
Sbjct: 280 SSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVK-RGLKPDI 338
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++SL+ G G L G + MV++ ++ D
Sbjct: 339 TTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPD 372
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y ++ + E + L ++ + V P + + + + + + A ++
Sbjct: 267 NCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNG-VEPNVVTYSSFMDYLCKNGRCTEARKI 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M ++ + ++++LL+ G + M LF +M + + PD +N L++
Sbjct: 326 FDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAK 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A VF +M ++ L+P VT+ TLI G C R++ AL L ++M+ V P+
Sbjct: 386 QGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVS-NGVSPNFI 444
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +++GL G + A F +++++
Sbjct: 445 TYNIMLQGLFRTGRTATAKEFYVQIIKS 472
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 13/150 (8%)
Query: 99 RARL----LEHALQVFDEMSSFNVQRTVKSFNTLL------NAMLTCGKIDRMTDLFQIM 148
RAR+ E AL VFDE+ + ++S N L N + +RM M
Sbjct: 26 RARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASM 85
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
V+P +Y IL+ C + RL+ + ++K+ + + F L+ GLC + R D
Sbjct: 86 ---VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTD 142
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+A+ + M + P+ ++KGLC
Sbjct: 143 DAMDIVLRGMTELSCVPNVFSHTIILKGLC 172
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 106 ALQVFDEMSSFN---VQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNI 161
A+ F+ M+ V TV ++ L+ + G++D L +++K + +N
Sbjct: 71 AVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNP 130
Query: 162 LMHGCVVSRRLEDAWK-VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-R 219
L+ G +R +DA V M + P + + ++ GLC E R EAL+L M
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+ ++++I GL G+ A EM+ +I
Sbjct: 191 GGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRI 229
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKQGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 94/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C VG+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENFCKVGQYDKAVKLLDKLIEKDI 357
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + K P E+ CN VI Y RA HA ++ DE
Sbjct: 332 YCMLINGLGSMERLDEALKYFQLSKESG--FPMEVPTCNAVIGAYCRALEFHHAFKMVDE 389
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
M + ++++ +LN ++ KI+ +LFQ ME+ P+ +Y +++ + R
Sbjct: 390 MRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A KV+ +M ++ + P + F LI GLC E R++EA ++M+ ++P Q+F+
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD-KGIRPPGQLFS 508
Query: 232 SLIKGLCAVGELSLA 246
+L + L G ++LA
Sbjct: 509 NLKEALVEGGRITLA 523
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 15/245 (6%)
Query: 8 SPFRLASLLR-LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
SP +A +L+ L LAL F+ A+ + FRY+ + +I LG+ K
Sbjct: 119 SPQLVAEVLKNLSNAGILALAFFR---------WAERQQGFRYSAEGFHNLIEALGKIKQ 169
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F V ++ ++ R + F ++ Y RAR ++ A++ F++MSSF ++ + +N
Sbjct: 170 FRLVWSLVEAMR--CRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYN 227
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
L++ + ++ + +F+ M++ PD +Y +LM G + L V+ EML
Sbjct: 228 WLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLD 287
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P +V +G LI C + DEA+K+ +M P V+ LI GL ++ L
Sbjct: 288 AGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEE-SGCMPSPHVYCMLINGLGSMERLD 346
Query: 245 LALGF 249
AL +
Sbjct: 347 EALKY 351
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I+ ++ DE ++ H+++ ++ +P ++C +I+ G L+ AL+
Sbjct: 293 DVVAYGMLISAFCKSGKCDEAIKVFHEME-ESGCMPSPHVYCMLINGLGSMERLDEALKY 351
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F V + N ++ A + + M K + P+ +Y+I+++ +
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S ++E+A+ +F M + +P L T+ ++ C RVD ALK+ + M+ V P
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQ-MKEKGVLPCMH 470
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+F++LI GLC L A + +EM+ I
Sbjct: 471 MFSALINGLCFENRLEEACVYFQEMLDKGI 500
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +KP +++ Y+ II L + K+ + + ++ + P + + ++ +
Sbjct: 195 EGHSVKP---DVVMYNTIIHSLCKNKLLGDACDLYSEMIVKG-ISPNVVTYNALVYGFCI 250
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
L+ A + +EM N+ V +FNTL++A+ GK+ + +M K + PD +
Sbjct: 251 MGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVT 310
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G ++++A VF M + + P + T+ T+I GLC E VDEA+ L E+ M
Sbjct: 311 YNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEE-M 369
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ N+ PD + SLI GLC L A+ ++M I+ D
Sbjct: 370 KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 412
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ AL D++ + Q S+ TL+N + G+ + L + +E + V PD YN
Sbjct: 149 IKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 208
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++H ++ L DA ++ EM+ + + P +VT+ L+YG C+ + EA L + M++
Sbjct: 209 IIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNE-MKLK 267
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD F +LI L G++ A
Sbjct: 268 NINPDVCTFNTLIDALGKEGKMKAA 292
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 15/219 (6%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K + N+ Y+++I L +A +F E + +++ +P+ I F +I
Sbjct: 441 VKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKME-GKGCMPDAITFKTIICALFEKDEN 499
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A ++ EM + +Q K ++ + +M K + PD +Y L
Sbjct: 500 DKAEKILREMIARGLQEARKV------------RLKEAKIVLAVMTKACIKPDVVTYGTL 547
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + L+ A VF M + + P + + +I GLC + VDEA+ L E+M + N
Sbjct: 548 MDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEM-KHKN 606
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ P+ + SLI LC L A+ +EM + I+ D
Sbjct: 607 MFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPD 645
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 5/163 (3%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P + +I + ++++ A+ +F+EM N+ + ++ +L++ + ++R
Sbjct: 337 SGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLER 396
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L + M E+ + PD SY IL+ RLE+A + F +L + + T+ +I
Sbjct: 397 AIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMIN 456
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
GLC EA+ LK M PDA F ++I CA+ E
Sbjct: 457 GLCKADLFGEAMDLKSK-MEGKGCMPDAITFKTII---CALFE 495
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + +I + + ++ A+ +F+EM N+ + ++ +L++A+ ++R
Sbjct: 572 VTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAI 631
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L + M+++ + PD SY IL+ G S RLE A ++F +L + + + +I L
Sbjct: 632 ALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINEL 691
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
C DEAL L+ M PDA F +I L
Sbjct: 692 CKAGLFDEALDLQXK-MEDKGCMPDAVTFDIIIWAL 726
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A+ FD M FN +L++++ + LF+ E +PD C+ NILM+
Sbjct: 47 AVASFDRMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMN 106
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ A+ V +LKR P +T TLI GLC + +AL D + +
Sbjct: 107 CFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYF-HDQVVAQGFQ 165
Query: 225 PDAQVFASLIKGLCAVGE 242
+ + +LI GLC GE
Sbjct: 166 LNQVSYRTLINGLCKTGE 183
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 37/174 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + K DE + ++KH + P + + ++I + LE A+ +
Sbjct: 575 NVQCYTIMIDGLCKKKTVDEAMSLFEEMKHK-NMFPNIVTYTSLIDALCKNHHLERAIAL 633
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ----------------------- 146
EM +Q V S+ LL+ + G+++ ++FQ
Sbjct: 634 LKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCK 693
Query: 147 -------------IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ +K PDA +++I++ + A K+ EM+ R L
Sbjct: 694 AGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P E+++ +I +AR ++ AL++ +M ++N L++ + G ++
Sbjct: 336 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 395
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F +++E PD +YNIL+ G + + A VFD+M P +VT+GTLI GL
Sbjct: 396 AFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGL 455
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C ++ +A L M+ PD+ V++SL+ GLC G+L +EM R+ +
Sbjct: 456 CKRRQLTKA-SLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 511
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 2/164 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + +I +A + A+++F M + + ++ L++ + K+D +
Sbjct: 302 VPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 361
Query: 144 LFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ M+K + +PD +YNIL+ G S +E A FDEML+ +P + T+ L+ G C
Sbjct: 362 MLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFC 421
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
D A + +DM + P+ + +LI GLC +L+ A
Sbjct: 422 KAGNTDAACGVFDDMSSSH-CSPNVVTYGTLISGLCKRRQLTKA 464
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIM 148
+ ++ + + + ++ A+ + +++++ T+ ++N LLN + G+++ DL +I+
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-------------------- 188
+ +PD +Y L+ G +R +A+K+F EM R L
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287
Query: 189 ---------------PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
P +VT T+I GLC R+ A+++ + M + P+ V+++L
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKS-MEARGLAPNEVVYSAL 346
Query: 234 IKGLCAVGELSLALGFKEEM 253
I GLC ++ AL +M
Sbjct: 347 IHGLCKARKMDCALEMLAQM 366
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+++I L ++ + + ++ + P+ + ++S + +A + A V
Sbjct: 374 DTITYNILIDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNILVSGFCKAGNTDAACGV 432
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD+MSS + V ++ TL++ + ++ + + FQ M E+ PD+ Y+ L+ G
Sbjct: 433 FDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCK 492
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-----KEDMMRVYNV 223
S +LE +FDEM +R T LI+ LC RVDEA+ L KE M Y
Sbjct: 493 SGKLEGGCMLFDEM-ERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAY 551
Query: 224 KPDAQVFASLIK 235
+ ++LIK
Sbjct: 552 N---SIISTLIK 560
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 114/272 (41%), Gaps = 47/272 (17%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
KD LA +LF+ + P F++++ + ++ R K E +L +
Sbjct: 36 KDADLAWELFQ--------CLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKN-EL 86
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKI 138
T +P+ + +I+ Y AR E A V EM + V ++K+ N +L+ + GK+
Sbjct: 87 ATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKV 146
Query: 139 --------------------------------DRMTDLFQIMEKYV----SPDACSYNIL 162
++ D +MEK +P +YN L
Sbjct: 147 LAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNAL 206
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G RLE+A + +++ P +VT+ +LI GL E R EA KL ++M +
Sbjct: 207 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA-LRG 265
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ D + +LI+GL G++ A + M
Sbjct: 266 LVLDTVCYTALIRGLLQAGKIPQASSVYKTMT 297
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%)
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R +A + L P + T+ LI G CL +EA + +M Y V P +
Sbjct: 72 TKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLK 131
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ GLC G++ A+ E N +D
Sbjct: 132 THNLVLHGLCKSGKVLAAMDHFETTTTNGCTID 164
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS+N L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ L EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDXLRLVEEM 246
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + L PT + F LI
Sbjct: 241 RLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 HCKSGNLDAAADVLKAMIRL-SVPTEAGHYGXLIENFCKAGQYDKAVKLLDKLIEKDI 357
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 4/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L K FD + I+ Q++ + + P+ I F VI+ + + +E A++
Sbjct: 47 SLISYTTLLAALTMQKRFDSIYSIISQVEENG-MNPDSIFFNAVINAFSESGNMESAMET 105
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F +M ++ T ++NTL+ GK + L ++M E V P+ +YN+L+
Sbjct: 106 FWKMQENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWC 165
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+R+ +AW V +M+ +QP +VT+ T+ + +D+A + +M V+P+
Sbjct: 166 NKKRITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQN-NGVQPNE 224
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+ ++ G C G + AL F M
Sbjct: 225 RTCGIIMSGYCKEGRIREALRFAYRM 250
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +IF ++I + + +V + M F V+ V +F+T++NA T G +++ ++
Sbjct: 257 PNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCREI 316
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M K + PDA +Y+IL G V ++ E A ++ M+K QP +V F T+I G C
Sbjct: 317 FDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCS 376
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++D A+++ + M + + P+ + F +LI G
Sbjct: 377 AGKMDYAVRVFDKMCQ-RGISPNLKTFETLIWGF 409
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 8/213 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G A +E ++L + + V P + ++ + + + A V +M
Sbjct: 121 YNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKRITEAWNVVYKM 180
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +Q V ++NT+ A G +D+ + ++ V P+ + I+M G R+
Sbjct: 181 IASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGIIMSGYCKEGRI 240
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDMMRVYNVKPDAQV 229
+A + M + + P LV F +LI G + VDE L L E+ + VKPD
Sbjct: 241 REALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEE----FGVKPDVIT 296
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F++++ G + ++MV+ IE DA
Sbjct: 297 FSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDA 329
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 1/139 (0%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+ TLL A+ + D + + Q+ E ++PD+ +N +++ S +E A + F +M
Sbjct: 50 SYTTLLAALTMQKRFDSIYSIISQVEENGMNPDSIFFNAVINAFSESGNMESAMETFWKM 109
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ ++PT T+ TLI G + + +E++KL E M + NVKP+ + + L++ C
Sbjct: 110 QENGMKPTTSTYNTLIKGYGIAGKPEESVKLLELMSQEGNVKPNLRTYNVLVRAWCNKKR 169
Query: 243 LSLALGFKEEMVRNKIEMD 261
++ A +M+ + I+ D
Sbjct: 170 ITEAWNVVYKMIASGIQPD 188
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D V ++L+ L + V P+ I F +++ + A +E ++FD+M ++ +++
Sbjct: 276 DGVDEVLN-LMEEFGVKPDVITFSTIMNAWSTAGFMEKCREIFDDMVKAGIEPDAHAYSI 334
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L + + ++ +L M K P+ + ++ G + +++ A +VFD+M +R
Sbjct: 335 LAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGWCSAGKMDYAVRVFDKMCQRG 394
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVG--- 241
+ P L TF TLI+G E R + K +E +M + V+P+ + + A G
Sbjct: 395 ISPNLKTFETLIWGFA-EAR--QPWKAEEILQIMTEFEVQPEKSTMLLVAEAWRATGMTK 451
Query: 242 ELSLALGFKEEMVRNKIEM 260
E + LG RN+ EM
Sbjct: 452 EANRLLG-----TRNRKEM 465
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y I+ DE Q+ ++ V+P + F ++ + ++ A V
Sbjct: 407 NAVTYSTILHGFCNLGQLDEATQLFKEMV-GRNVMPNTLTFSILVDGLCQEGMVSEARWV 465
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M+ V+ + ++N L+N K++ +F+IM K +PD SYNIL++G
Sbjct: 466 FETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCN 525
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
SRR++ A + +M ++L P VT+ T++ GLC R+ +A +L + M + P
Sbjct: 526 SRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS-GMLPTLM 584
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ L+ GLC G L AL + M K+E D
Sbjct: 585 TYSILLNGLCKHGHLDEALKLFKSMKEKKLEPD 617
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 109/217 (50%), Gaps = 5/217 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHA 106
R +++ + + + + K + V + +Q+ D V + N+ I+ R ++ A
Sbjct: 90 RPSIVEFGKFLGSIAKMKQYSTVVYLCNQM--DLFGVTHTVYSLNILINCLCRLNHVDFA 147
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+ V+ +M +Q V +F TL+N + GKI +L+ +++ PD SYN L++G
Sbjct: 148 VSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLING 207
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S A VF +M + +P +VT+ T+I LC + V++A+ +M+ + P
Sbjct: 208 LCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVG-RGIPP 266
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
DA + S++ GLC +G+L+ A + M +N + D
Sbjct: 267 DAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDV 303
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 106/211 (50%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N L + +++ L + M E + + + + V P + +++ Y + A +V
Sbjct: 442 NTLTFSILVDGLCQEGMVSEARWVFETMT-EKGVEPNIYTYNALMNGYCLRCKMNEARKV 500
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ M + S+N L+N ++D+ L Q+ K ++P+ +YN +M G
Sbjct: 501 FEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCY 560
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL DA ++F +M + PTL+T+ L+ GLC +DEALKL + M+ ++PD
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKS-MKEKKLEPDII 619
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ LI+G+ G+L +A G ++ + I+
Sbjct: 620 LYTILIEGMFIGGKLEVAKGLFSKLSADGIQ 650
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 108/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + + + +++ + P + + +I + RL+ A+
Sbjct: 197 DVISYNTLINGLCNSGNTNMAVHVFKKMEQNG-CKPNVVTYNTIIDSLCKDRLVNDAMDF 255
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + ++N++++ + G+++ T LF+ ME+ PD +YNI++
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + DA EM+ + + P +VT+ T+++GLC +++EA++L + M + KPD
Sbjct: 316 DRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQ-KGCKPDVV 374
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ ++I LC ++ A+ F EMV I +A
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNA 408
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 106/200 (53%), Gaps = 6/200 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E KP +++ Y++II L + ++ ++ L ++ D + P+ + + ++
Sbjct: 295 EQNGCKP---DVVTYNIIIDSLYKDRLVNDAADFLSEMV-DQGIPPDVVTYTTILHGLCY 350
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
L A+++F +M + V ++NT+++++ + D M L +++++ + P+A +
Sbjct: 351 LGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVT 410
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y+ ++HG +L++A ++F EM+ R + P +TF L+ GLC E V EA + E M
Sbjct: 411 YSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMT 470
Query: 219 RVYNVKPDAQVFASLIKGLC 238
V+P+ + +L+ G C
Sbjct: 471 E-KGVEPNIYTYNALMNGYC 489
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 122/241 (50%), Gaps = 17/241 (7%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
+ +A+ +FK E KP N++ Y+ II L + ++ ++ L ++
Sbjct: 213 NTNMAVHVFKK-------MEQNGCKP---NVVTYNTIIDSLCKDRLVNDAMDFLSEMV-- 260
Query: 81 TRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
R +P + I N I +G L L A ++F M + V ++N +++++ +
Sbjct: 261 GRGIPPDAITYNSI-VHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLV 319
Query: 139 DRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+ D L +++++ + PD +Y ++HG +L +A ++F +M ++ +P +V + T+
Sbjct: 320 NDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTI 379
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I LC + V++A++ +M+ + P+A +++++ G C +G+L A +EMV
Sbjct: 380 IDSLCKDRLVNDAMEFLSEMVD-RGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438
Query: 258 I 258
+
Sbjct: 439 V 439
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+++I ++ D+ + +L Q+ ++ P + + ++ L A ++
Sbjct: 512 DLHSYNILINGYCNSRRMDKAKALLTQMSVK-KLTPNTVTYNTIMKGLCYVGRLLDAQEL 570
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M S + T+ +++ LLN + G +D LF+ M EK + PD Y IL+ G +
Sbjct: 571 FKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFI 630
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL--KEDMMR 219
+LE A +F ++ +QP T+ +I GL E DEA +L K MM+
Sbjct: 631 GGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 99/193 (51%), Gaps = 3/193 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ ++ L + M E ++ + H V P + + ++ + ++ A++VFD M
Sbjct: 284 NTVVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLE 173
+ V S+NTL+N +D+ LF+ M + ++P+ +YN L+HG RL+
Sbjct: 343 HKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 402
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA +F EM+ R P LVT+ TL LC +D+A+ L + + N PD Q++ ++
Sbjct: 403 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLK-AIEGSNWDPDIQIYTTI 461
Query: 234 IKGLCAVGELSLA 246
+ G+C GEL A
Sbjct: 462 LDGMCRAGELEDA 474
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 7/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE--HAL 107
N++ + +I L + + E I ++ T+ + I+ N + +G +L E H
Sbjct: 209 NVVVFSTLIDSLCKDRQVTEAFNIFSEMI--TKGISPNIVTYNSL-IHGLCKLCEWKHVT 265
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ +EM + V + NT+++A+ G + D+ +M + V P+ +YN LM G
Sbjct: 266 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGH 325
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ A KVFD M+ + ++++ TLI G C VD+A+ L E+M R + P+
Sbjct: 326 CLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-QELTPN 384
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC VG L A+ EMV
Sbjct: 385 TVTYNTLIHGLCHVGRLQDAISLFHEMV 412
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P + F +++ + + L + +M SF + V + ++N++ ++D +
Sbjct: 68 PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 127
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +I++ PDA ++ L+ G V ++ +A +FD+M+ QP +VT+GTLI GLC
Sbjct: 128 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 187
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
A++L M + N +P+ VF++LI LC +++ A EM+ I
Sbjct: 188 VGNTSAAIRLLRSMEQ-GNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + AL +FD+M Q V ++ TL+N + G L
Sbjct: 138 PDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRL 197
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ME+ P+ ++ L+ R++ +A+ +F EM+ + + P +VT+ +LI+GLC
Sbjct: 198 LRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCK 257
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
L +M+ + PD +++ LC G ++ A + M+ +E
Sbjct: 258 LCEWKHVTTLMNEMVD-SKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVE 312
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ + P + + +I L+ A+ +
Sbjct: 349 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQ-ELTPNTVTYNTLIHGLCHVGRLQDAISL 407
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ TL + + +D+ L + +E PD Y ++ G
Sbjct: 408 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 467
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LEDA +F + + LQP + T+ +I+GLC + + EA KL +M + P+
Sbjct: 468 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK-NGCSPNDC 526
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +G E + EEM+ +D
Sbjct: 527 TYNLITRGFLRNNEALRTIELLEEMLARGFSVD 559
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y + L + + D+ +L ++ + P+ I+ ++ RA LE A +
Sbjct: 419 DLVTYRTLSDYLCKNRHLDKAMALLKAIE-GSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +SS +Q V ++N +++ + G + + LF M K SP+ C+YN++ G +
Sbjct: 478 FSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 537
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+ ++ +EML R + T TL+ G+ + +D+++K
Sbjct: 538 NNEALRTIELLEEMLARGFSVDVST-TTLLVGMLSDDGLDQSVK 580
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 120/247 (48%), Gaps = 14/247 (5%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L++ +KDP+ AL++F N Q K F +N Y I+ KL + K F V ++
Sbjct: 138 NLIKREKDPQHALKIF-------NMVSEQ--KGFNHNNATYATILQKLAQFKKFQAVDRV 188
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAM 132
LHQ+ ++ E +F N++ Y + E F + + ++ + K+ ++ LN +
Sbjct: 189 LHQMTYEACKF-HEGVFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLL 247
Query: 133 LTCGKIDRMTDLFQIMEKYV--SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-P 189
+ ++D + L ++ + P+ C +NIL+ ++ A++V EM + P
Sbjct: 248 VDSNQVDLVRKLLLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYP 307
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
++T+ TL+ GLC R+ EA +L E+M+ + PD + LI G C G+ A
Sbjct: 308 NVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNV 367
Query: 250 KEEMVRN 256
E M N
Sbjct: 368 IEFMKNN 374
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 84/169 (49%), Gaps = 1/169 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L R E ++ ++ ++VP+ + + +I+ + R + A V
Sbjct: 308 NVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNV 367
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ M + V +++ L++ + GK+ D L ++ + PDA +Y L++
Sbjct: 368 IEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSR 427
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ ++++A ++ EM + Q VTF ++ GLC E R DEAL + E +
Sbjct: 428 NGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKL 476
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 3/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D ++L ++ + V P I++ ++ Y R+ +
Sbjct: 147 RADVVTYGTLIRGLCDAAELDGALELLGEM-CGSGVHPNVIVYSCLLRGYCRSGRWQDVS 205
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VF+EMS V+ V F ++ + G+I + + IM ++ + P+ +YN+L++
Sbjct: 206 KVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCL 265
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+ +A + +EM + + P +VT+ TLI GL L +D A+ L E+M++ V+P
Sbjct: 266 CKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEP 325
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
D F S+I GLC +G + A+ +E M
Sbjct: 326 DVVTFNSVIHGLCKIGRMRQAISVREMM 353
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 15/258 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLK---PFRYNLLHYDLIITKL 61
+P +PF LA LLR + AL L + P TEA L P + + Y++++ L
Sbjct: 30 RPAAPF-LAVLLRRGRADAAAL-LNRRLRAAPV-TEACSLLSALPDVRDAVSYNIVLAAL 86
Query: 62 GRAKMFDEVQQILHQLKHDTRVV-----PEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
R +++Q L L +R P + + V+ +R + A+ + M +
Sbjct: 87 CRRG--GDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQAS 144
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
V+ V ++ TL+ + ++D +L ++ V P+ Y+ L+ G S R +D
Sbjct: 145 GVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDV 204
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
KVF+EM + ++P ++ F I LC + R+ +A+K+K D+M ++P+ + LI
Sbjct: 205 SKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVK-DIMVQRGLEPNVVTYNVLIN 263
Query: 236 GLCAVGELSLALGFKEEM 253
LC G + AL + EM
Sbjct: 264 CLCKEGSVREALALRNEM 281
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 6/147 (4%)
Query: 120 RTVKSFNTLLNAMLTCG-----KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
R S+N +L A+ G + + D+ + P+A SY ++M G SRR ++
Sbjct: 74 RDAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDE 133
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A + M ++ +VT+GTLI GLC +D AL+L +M V P+ V++ L+
Sbjct: 134 AVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCG-SGVHPNVIVYSCLL 192
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
+G C G EEM R +E D
Sbjct: 193 RGYCRSGRWQDVSKVFEEMSRLGVEPD 219
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 2/212 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I R + ++ +L + + P+ + +I+ + + ++ A
Sbjct: 361 NLVTYNYLIGGFLRVHKVNMAMNLMSELI-SSGLEPDSFTYSILINGFSKLWEVDRAEMF 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M+ ++ + + LL A+ G +++ LF M+ DA +Y+ +M+G S
Sbjct: 420 LRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGLDAVAYSTMMYGACKS 479
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++ A ++ +ML L P VT+ LI ++EA ++ + M PD V
Sbjct: 480 GDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMA-ASGFVPDVAV 538
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLIKG A G+++ L EM + +D
Sbjct: 539 FDSLIKGYSAEGQINKILDLIHEMRAKNVAID 570
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 8/204 (3%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ K GR +V+ I+ Q + VV ++ N + G R AL + +EM
Sbjct: 230 LCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLI-NCLCKEGSVR---EALALRNEMDDKG 285
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGCVVSRRLED 174
V V ++NTL+ + ++D L + M + V PD ++N ++HG R+
Sbjct: 286 VAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQ 345
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A V + M +R LVT+ LI G +V+ A+ L +++ ++PD+ ++ LI
Sbjct: 346 AISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELIS-SGLEPDSFTYSILI 404
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
G + E+ A F M + I
Sbjct: 405 NGFSKLWEVDRAEMFLRTMTQRGI 428
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I+ L +A M E + L ++ P + + +I Y +AR +E AL
Sbjct: 9 NAILYNNLISCLCKAGMLAEAESYLKRMPQ--HCAPNVVSYNIIIDGYCKARNIEKALAF 66
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM T ++++++ + G + + D+F M K PD ++N+L+ G
Sbjct: 67 LREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWR 126
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+R++ +A ++F M R +P +VT+ T+I GLC ++DEA+ L E M+ +V P
Sbjct: 127 ARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLE-RMKQEDVSPTFV 185
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI LC L A E+M
Sbjct: 186 TYTTLIDHLCKFTRLQQAYEVFEKMAEG 213
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 136/284 (47%), Gaps = 50/284 (17%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L+ L R +K + A +LF++ N ++ KP +++ Y+ +I L + K DE
Sbjct: 121 LSGLWRARKIHE-ARELFRSMN-------SRGCKP---DVVTYNTMIAGLCKWKKLDEAV 169
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+L ++K + V P + + +I + L+ A +VF++M+ T +++ L N
Sbjct: 170 FLLERMKQED-VSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNK 228
Query: 132 MLTCGKIDR--------------MTD-----------------------LFQIMEKYVSP 154
+ GK+ MTD + ++M K ++P
Sbjct: 229 LQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAP 288
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D +Y+IL++G +RR +A ++F EM R + PT+VT+ TL+ GL ++ +A++L
Sbjct: 289 DFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELT 348
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
M+ + PD + +I+G CA G+ + A ++M+++ I
Sbjct: 349 YFMLDQGRL-PDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGI 391
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 44/226 (19%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
A LFK N+ P N+ Y+++I+ L + +E ++L ++ D V
Sbjct: 414 AWMLFKRMQSGKNDKVPAP------NMFTYEILISSLCKTDQVEEAFKLLSAMR-DKGFV 466
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I+ ++S RA L+ A +++ EMS N Q+ V S N LL+ +L G +D D
Sbjct: 467 PSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDF 526
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q+ + + PD +Y+ L + GLC
Sbjct: 527 LKQMTDTGIVPDKFTYDKL-----------------------------------VVGLCW 551
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ + D+A KL E+++R +P+ Q L+ LCA G+ A F
Sbjct: 552 QGKADQARKLVEELVRD-GKRPENQGLRQLLGALCAQGDFQGAYEF 596
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 47/245 (19%)
Query: 54 YDLIITKLGRAKMFD---EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
Y L++ LG +KM E +++ ++ ++ P+ + +I+ +AR A ++F
Sbjct: 257 YSLVV--LGLSKMDGGNVEAAKLVTEM-MGKKIAPDFYAYSILINGLCKARRPGEAKEMF 313
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM + TV ++NTLL +L+ K+ D M + ++++ PD CSYN+++ G +
Sbjct: 314 QEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGFCAN 373
Query: 170 RRLEDAWKVFDEMLK------------------------------RRLQ---------PT 190
+A+ +F +M+K +R+Q P
Sbjct: 374 GDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPN 433
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+ T+ LI LC +V+EA KL MR P +++ L+ L G L A
Sbjct: 434 MFTYEILISSLCKTDQVEEAFKLL-SAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELY 492
Query: 251 EEMVR 255
+EM R
Sbjct: 493 KEMSR 497
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 104/201 (51%), Gaps = 10/201 (4%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K ++++++++++ L RA+ E +++ + + P+ + + +I+ + +
Sbjct: 106 PAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKK 164
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACS--- 158
L+ A+ + + M +V T ++ TL++ + K R+ +++ EK P AC+
Sbjct: 165 LDEAVFLLERMKQEDVSPTFVTYTTLIDHLC---KFTRLQQAYEVFEKMAEGPCACTEPA 221
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDM 217
Y++L + + +L +A +V+ +M ++ + T T+ ++ GL ++ EA KL +M
Sbjct: 222 YSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEM 281
Query: 218 MRVYNVKPDAQVFASLIKGLC 238
M + PD ++ LI GLC
Sbjct: 282 MG-KKIAPDFYAYSILINGLC 301
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + F ++S RAR + A ++F M+S + V ++NT++ + K+D L
Sbjct: 112 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 171
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M++ VSP +Y L+ RL+ A++VF++M + T + L L
Sbjct: 172 LERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQR 231
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV-GELSLALGFKEEMVRNKIEMD 261
++ EA ++ DM R NV ++ ++ GL + G A EM+ KI D
Sbjct: 232 AGKLVEASRVYSDMCR-KNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPD 289
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 137 KIDRMTDLFQIM----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
K D++ + F+++ +K P + +L+ + RL+DA++++ EM + Q +
Sbjct: 446 KTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVG 505
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ L+ G+ VDEA + M + PD + L+ GLC G+ A EE
Sbjct: 506 SSNILLDGILRRGSVDEAKDFLKQMTDT-GIVPDKFTYDKLVVGLCWQGKADQARKLVEE 564
Query: 253 MVRN 256
+VR+
Sbjct: 565 LVRD 568
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ ++ L ++ + +L LK +R P+ + + + + Y + AL+V
Sbjct: 170 DLHSFNTLLDILCKSNRVETAHDLLRTLK--SRFRPDTVSYNILANGYCLKKRTPMALRV 227
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM ++ T+ ++NT+L +I + + M+K D SY ++HG
Sbjct: 228 LKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGE 287
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A +VFDEM+K + P + T+ LI C + V A+ + E+M+R P+
Sbjct: 288 AGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVV 347
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
F +I+GLC VG++ ALGF E M
Sbjct: 348 TFNVVIRGLCHVGDMERALGFMERM 372
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 113/245 (46%), Gaps = 10/245 (4%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
+L RL AL FK+ + + L + ++ +D + R + F+ +
Sbjct: 72 TLKRLWNHGPKALLFFKHLD--------RHLPSYTHSPSSFDHAVDIAARMRDFNSAWAL 123
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ +++ R+ P + Y A++ F M + + + SFNTLL+ +
Sbjct: 124 VGRMR-SLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILC 182
Query: 134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+++ DL + ++ PD SYNIL +G + +R A +V EM++R ++PT+VT
Sbjct: 183 KSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVT 242
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T++ G ++ EA + +M + + D + ++I G GE+ A +EM
Sbjct: 243 YNTMLKGYFRSNQIKEAWEFYLEMKK-RKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEM 301
Query: 254 VRNKI 258
V+ +
Sbjct: 302 VKEGV 306
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
F + + R R A + M S + + K+ L + GK R F M
Sbjct: 104 FDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMH 163
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
++ + D S+N L+ S R+E A + LK R +P V++ L G CL+ R
Sbjct: 164 EHGLHQDLHSFNTLLDILCKSNRVETAHDLL-RTLKSRFRPDTVSYNILANGYCLKKRTP 222
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
AL++ ++M++ ++P + +++KG ++ A F EM + K E+D
Sbjct: 223 MALRVLKEMVQ-RGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID 274
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + VI +G A ++ A +VFDEM V V ++N L+ + +F+
Sbjct: 276 VSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEE 335
Query: 148 M--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M E SP+ ++N+++ G +E A + M + L+ ++ T+ +I C
Sbjct: 336 MVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAG 395
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+++ L +VF + GLC
Sbjct: 396 EIEKGL----------------EVFGKMGDGLC 412
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I + + ++ + P + F VI +E AL
Sbjct: 309 NVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGF 368
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ M ++ +V+++N ++ G+I++ ++F M + P+ +YN+L+ V
Sbjct: 369 MERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFV 428
Query: 169 SRRLED---AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ ED A K+ EM++R P TF ++ GL + D A +D++R+
Sbjct: 429 RKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFA----KDILRM 479
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 111/213 (52%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + + F+ V L ++ V + + + +I+ Y R L+E A Q+
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKG-VFADIVTYNTLINAYCREGLVEEAFQL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+ SS ++ + ++N +L + GK DR D L ++++ ++P+A +YN L+
Sbjct: 315 LNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR 374
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A ++FDEM +R + P LV+F +LI L + +AL +M R + PD
Sbjct: 375 RDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS-GIVPDNV 433
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G C G LS AL ++EM+ MD
Sbjct: 434 IYTILIDGFCRNGALSDALKMRDEMLARGCFMD 466
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+ ++ ++ R E Q+I ++ V+P+ + F ++I R L AL
Sbjct: 361 NAATYNTLLVEICRRDNILEAQEIFDEMSRRG-VLPDLVSFSSLIGVLARNGHLYQALMH 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
F EM + + L++ G + +M D +++ + D +YN ++G
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRD--EMLARGCFMDVVTYNTFLNGL 477
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ DA +F+EM++R + P TF TLI G C + +D+AL L E M+R N+KPD
Sbjct: 478 CKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT-NLKPD 536
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G C GE+ A ++M+R I
Sbjct: 537 KVTYNTLIDGFCKAGEMGRAKELWDDMIRKDI 568
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 60 KLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
++GRAK ++D++ ++ D ++P+ I + V++ + + LL AL + D+M +
Sbjct: 552 EMGRAKELWDDM------IRKD--IIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ + + NTL+ G + + + L +++ + PD+ SYN L+ G + LE A+
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +EM KR LQ ++T+ ++ G C E ++ EA ++ M+ + + PD ++SLI G
Sbjct: 664 LINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEI-GINPDGATYSSLINGH 722
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
+ + A F +EM++ + D
Sbjct: 723 VSQDNMKEAFRFHDEMLQRGLVPD 746
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT------ 134
+ +VP+ +I+ +I + R L AL++ DEM + V ++NT LN +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFAD 485
Query: 135 ---------------------------C--GKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
C G +D+ +LF+ M + + PD +YN L+
Sbjct: 486 ADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLID 545
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + + A +++D+M+++ + P +++GT++ G C + EAL L + M+ ++
Sbjct: 546 GFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE-KGIR 604
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+ +LIKG C G++ A + +M+ N I D+
Sbjct: 605 PNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDS 642
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVF 110
L YDL++ +AK E + L+ + V I CN ++ R ++ A +++
Sbjct: 188 LIYDLLVRTYVQAKKLREGSEAFQILRR--KGVSVSINACNKLLGGLVRTGWVDLAWEIY 245
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVS 169
E+ ++ V + N ++NA+ K + + ME K V D +YN L++
Sbjct: 246 GEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCRE 305
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+E+A+++ + R ++P L+T+ ++YGLC + D A + +M+++ + P+A
Sbjct: 306 GLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQL-GLTPNAAT 364
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +L+ +C + A +EM R +
Sbjct: 365 YNTLLVEICRRDNILEAQEIFDEMSRRGV 393
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++ L + E +I+ + V P+ + + ++ + ++ A++V
Sbjct: 274 DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRG-VEPDVVTYTTLMDGHCLQSEMDEAVKV 332
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M V S+ TL+N KID+ LF+ M K PD +YN LM+G
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL+DA +F EM+ R P LVT+ L+ LC ++EA+ L + + N+ PD Q
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLK-AIEASNLNPDIQ 451
Query: 229 VFASLIKGLCAVGELSLA 246
V+ +I G+C GEL A
Sbjct: 452 VYNIIIDGMCRAGELEAA 469
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + + E + Q+ + P+ + +++ +H +
Sbjct: 204 DVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQG-ISPDIFTYTSLVHALCNLCEWKHVTTL 262
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M + + V F+T+++A+ GK+ ++ +M ++ V PD +Y LM G +
Sbjct: 263 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++A KVFD M+++ P ++++ TLI G C ++D+A+ L E+M R + PD +
Sbjct: 323 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI-PDTK 381
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ +L+ GLC VG L A+ EMV
Sbjct: 382 TYNTLMYGLCHVGRLQDAIALFHEMV 407
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 12 LASLLRL--QKDPKLALQLFKNPNPNPNNTEAQPL------KPFRYNLLHYDLIITKLGR 63
LA +L+L Q DP L + EA L + F+ N++ Y +I L +
Sbjct: 123 LAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCK 182
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
++L ++ P+ +I+ ++I + R + A +F +M + +
Sbjct: 183 VGNTSAAIRLLRSMEQGN-CQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIF 241
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ +L++A+ + +T L Q++ + PD ++ ++ ++ +A ++ D M
Sbjct: 242 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 301
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
++R ++P +VT+ TL+ G CL+ +DEA+K+ DMM PD + +LI G C + +
Sbjct: 302 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVF-DMMVRKGFAPDVISYTTLINGYCKIHK 360
Query: 243 LSLALGFKEEMVRNK 257
+ A+ EEM R +
Sbjct: 361 IDKAMYLFEEMCRKE 375
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ + + L + +M SF V V + N L+N+ ++R+
Sbjct: 63 PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFC---HLNRVGFA 119
Query: 145 FQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F ++ K + PD ++ L+ G V ++ +A +FD+M+ QP +VT+GTLI G
Sbjct: 120 FSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLING 179
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
LC A++L M + N +PD ++ S+I LC +++ A +MV I
Sbjct: 180 LCKVGNTSAAIRLLRSMEQ-GNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISP 238
Query: 261 D 261
D
Sbjct: 239 D 239
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 2/183 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D P + + +I+ + A+++ M N Q V + ++++++ ++
Sbjct: 163 DEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVT 222
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+LF Q++ + +SPD +Y L+H + + ++M+ ++ P +V F T++
Sbjct: 223 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVV 282
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC E +V EA ++ DMM V+PD + +L+ G C E+ A+ + MVR
Sbjct: 283 DALCKEGKVTEAHEIV-DMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341
Query: 259 EMD 261
D
Sbjct: 342 APD 344
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y +I + D+ + ++ +P+ + ++ L+
Sbjct: 339 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCR-KEWIPDTKTYNTLMYGLCHVGRLQ 397
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+ +F EM + + +++ LL+++ ++ L + +E ++PD YNI++
Sbjct: 398 DAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIII 457
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + LE A +F + + L P++ T+ +I+GLC ++EA KL + M +
Sbjct: 458 DGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFME-MDGNDC 516
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + ++ +G E A+ EEM+ D+
Sbjct: 517 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 9/199 (4%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ K G+ V +IL D+ VP+ I + +IS Y + + ALQ+ D MS
Sbjct: 155 LCKTGKTWKATRVMEILE----DSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS--- 207
Query: 118 VQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176
V V ++NT+L + GK+ + M L + M++ PD +Y IL+ + A
Sbjct: 208 VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAM 267
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
K+ DEM + +P +VT+ LI G+C E R+DEA++ + M Y +P+ +++
Sbjct: 268 KLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFL-NHMPSYGCQPNVITHNIILRS 326
Query: 237 LCAVGELSLALGFKEEMVR 255
+C+ G A F EM+R
Sbjct: 327 MCSTGRWMDAEKFLAEMIR 345
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I L R + +L ++ P + + ++ + + +E A++
Sbjct: 351 SVVTFNILINFLCRKGLIGRAIDVLEKMPQHG-CTPNSLSYNPLLHALCKDKKMERAIEY 409
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + ++NTLL A+ GK+D ++ Q+ K SP +YN ++ G
Sbjct: 410 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSK 469
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +DA K+ DEM + L+P ++T+ TL+ GL E +VDEA+ D+ + VKP+A
Sbjct: 470 VGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM-GVKPNAI 528
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ S++ GLC + A+ F MV
Sbjct: 529 TYNSIMLGLCKARQTVRAIDFLAYMV 554
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + + A+++
Sbjct: 421 DIVTYNTLLTALCKDGKVDVAVEILNQLGSKG-CSPVLITYNTVIDGLSKVGKTDDAIKL 479
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM ++ + +++TL+ + GK+D F +E+ V P+A +YN +M G
Sbjct: 480 LDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCK 539
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+R+ A M+ R +PT ++ LI GL E EAL+L
Sbjct: 540 ARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALEL 584
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 108/240 (45%), Gaps = 38/240 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I + + ++L +++ D P+ + + +I+ + L+ A++
Sbjct: 246 DVITYTILIEATCKESGVGQAMKLLDEMR-DKGCKPDVVTYNVLINGICKEGRLDEAIRF 304
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILM----- 163
+ M S+ Q V + N +L +M + G+ +D L +++ K SP ++NIL+
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364
Query: 164 ----------------HGCVVS--------------RRLEDAWKVFDEMLKRRLQPTLVT 193
HGC + +++E A + D M+ R P +VT
Sbjct: 365 KGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVT 424
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ TL+ LC + +VD A+++ + + P + ++I GL VG+ A+ +EM
Sbjct: 425 YNTLLTALCKDGKVDVAVEIL-NQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEM 483
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V + LE+ +K ++M+ R P ++ +LI GLC + +A ++ E ++ PD
Sbjct: 121 VRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVME-ILEDSGAVPD 179
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI G C GE+ AL + M
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM 206
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 145 FQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F+ +E V PD + L+ G + + A +V + + P ++T+ LI G
Sbjct: 130 FKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISG 189
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
C + AL+L + M +V PD + ++++ LC G+L A+
Sbjct: 190 YCKTGEIGSALQLLDRM----SVSPDVVTYNTILRTLCDSGKLKEAM 232
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 7/211 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE-- 104
F+ N++ Y +I L + + E I ++ T+ + I+ N + +G +L E
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMI--TKGISPNIVTYNSL-IHGLCKLCEWK 202
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
H + +EM + V + NT+++A+ G + D+ +M + V P+ +YN LM
Sbjct: 203 HVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALM 262
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + ++ A KVFD M+ + ++++ TLI G C VD+A+ L E+M R +
Sbjct: 263 DGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSR-QEL 321
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + +LI GLC VG L A+ EMV
Sbjct: 322 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMV 352
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ L + M E ++ + H V P + + ++ + ++ A++VFD M
Sbjct: 226 VVDALCKEGMVAEAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHK 284
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
+ V S+NTL+N +D+ LF+ M + ++P+ +YN L+HG RL+DA
Sbjct: 285 DCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA 344
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+F EM+ R P LVT+ TL LC +D+A+ L + + N PD Q++ +++
Sbjct: 345 ISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLK-AIEGSNWDPDIQIYTTILD 403
Query: 236 GLCAVGEL 243
G+C GEL
Sbjct: 404 GMCRAGEL 411
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P + F +++ + + L + +M SF + V + ++N++ ++D +
Sbjct: 43 PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSA 102
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +I++ PDA ++ L+ G V ++ +A +FD+M+ QP +VT+GTLI GLC
Sbjct: 103 LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCK 162
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +V EA + +M+ + P+ + SLI GLC + E EMV +KI D
Sbjct: 163 DRQVTEAFNIFSEMI-TKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDV 220
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
+H + +EM + + V F+T+++A+ G I D+ +M ++ V PD +Y L
Sbjct: 690 KHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTAL 749
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + +++A KVFD M+ + P + ++ LI G C R+D+A+ L E M +
Sbjct: 750 MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQG 808
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ D + +LI GLC VG L A+ EMV
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 840
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + + ++ + ++ A++VFD M V+S+N L+N ++D+
Sbjct: 739 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 798
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L + M + + D +YN L+HG RL+ A +F EM+ P LVT+ L+ L
Sbjct: 799 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C + EA+ L + + N+ D V+ I G+C GEL A
Sbjct: 859 CKNHHLAEAMVLLK-AIEGSNLDADILVYNIAIDGMCRAGELEAA 902
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 105/218 (48%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K ++ Y+ +I L + V +L+++ +++++P ++F V+ + ++
Sbjct: 667 KGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIA 725
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A V D M V+ V ++ L++ ++D +F M K P+ SYNIL+
Sbjct: 726 IAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILI 785
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G +R++ A + ++M + L VT+ TLI+GLC R+ A+ L +M+ +
Sbjct: 786 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 845
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + L+ LC L+ A+ + + + ++ D
Sbjct: 846 -PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDAD 882
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 15/157 (9%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
L+ AL F+ M + + F LL ++ + L M+ + + PD + NI
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 621
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ RRL A+ V ++LK QP +VT+GTL+ GLC M
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC--------------KMITK 667
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ PD + SLI LC + E EMV +KI
Sbjct: 668 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKI 704
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ + P + + +I L+ A+ +
Sbjct: 289 NVISYNTLINGYCKIQSVDKAMYLFEEMSRQ-ELTPNTVTYNTLIHGLCHVGRLQDAISL 347
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ TL + + +D+ L + +E PD Y ++ G
Sbjct: 348 FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCR 407
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LEDA +F + + LQP + T+ +I+GLC + + EA KL +M + P+
Sbjct: 408 AGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNK-NGCSPNDC 466
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + +G E + EEM+ +D
Sbjct: 467 TYNLITRGFLRNNEALRTIELLEEMLARGFSVDV 500
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ + + L + +M SF + V + N L+N+ + R+
Sbjct: 579 PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC---HLRRLGYA 635
Query: 145 FQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F ++ K + PD +Y LM+G +M+ + + P + T+ +LI+
Sbjct: 636 FSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIFTYNSLIHA 682
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
LC L +M+ + P+ VF++++ LC G +++A + M++ +E
Sbjct: 683 LCNLCEWKHVTTLLNEMVN-SKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEP 741
Query: 261 DA 262
D
Sbjct: 742 DV 743
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I + + D+ +L Q+ ++ + + + +I L+HA+ +
Sbjct: 777 NVRSYNILINGYCQIQRMDKAMGLLEQMSLQG-LIADTVTYNTLIHGLCHVGRLQHAIAL 835
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EM + + ++ LL+ + + L + +E + D YNI + G
Sbjct: 836 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 895
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ LE A +F + + LQP + T+ +I+GLC +DEA KL M
Sbjct: 896 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y + L + + D+ +L ++ + P+ I+ ++ RA LE A +
Sbjct: 359 DLVTYRTLSDYLCKNRHLDKAMALLKAIE-GSNWDPDIQIYTTILDGMCRAGELEDARDL 417
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +SS +Q V ++N +++ + G + + LF M K SP+ C+YN++ G +
Sbjct: 418 FSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLR 477
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+ ++ +EML R + T TL+ G+ + +D+++K
Sbjct: 478 NNEALRTIELLEEMLARGFSVDVST-TTLLVGMLSDDGLDQSVK 520
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 13/253 (5%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
RL + LR Q DP+ ALQ+ + A + F + Y+ II KLG A FD +
Sbjct: 58 RLLTALREQADPEAALQMLNS---------ALAREDFAPSRAVYEEIIQKLGTAGAFDLM 108
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ-VFDEMSSFNVQRTVKSFNTLL 129
+ ++ +++ + ++ V S Y R R + A+ V +++++F VQ +N LL
Sbjct: 109 EGLVREMRREGHEAGAGVVRSFVES-YARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLL 167
Query: 130 NAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
N + ++ + ++ ++ ++ + PD + N L+ + ++ A + +EM +
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVA 227
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P TF TL+ G E ++ AL++K MM P LI G C +G + ALG
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMET-GCSPTRVTVNVLINGYCKMGRVEDALG 286
Query: 249 FKEEMVRNKIEMD 261
+ ++ + + E D
Sbjct: 287 YIQKEIADGFEPD 299
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L + DE + I++Q+ D +P+ F +I LE AL +
Sbjct: 334 DVFTYNTVINCLSKNGELDEAKGIVNQMV-DRGCLPDTTTFNTLIVALCSQNRLEEALDL 392
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM-HGCV 167
E++ + V +FN L+NA+ G LF+ M+ +PD +YNIL+ H C
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCS 452
Query: 168 VSR----------------------------------RLEDAWKVFDEMLKRRLQPTLVT 193
+ + R+E+A +VFD+M + + VT
Sbjct: 453 MGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVT 512
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI GLC R+D+A +L E M++ ++P + S++ C G+L A E M
Sbjct: 513 FNTLIDGLCKAKRIDDATELIEQMVK-EGLQPSNITYNSILTHYCKQGDLKKAADILETM 571
Query: 254 VRNKIEMD 261
N E+D
Sbjct: 572 TANGFEID 579
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 4/169 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-Q 146
+ + +I + +E A +VFD+M + + R+ +FNTL++ + +ID T+L Q
Sbjct: 476 VTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQ 535
Query: 147 IMEKYVSPDACSYN-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
++++ + P +YN IL H C L+ A + + M + +VT+GTLI GLC
Sbjct: 536 MVKEGLQPSNITYNSILTHYC-KQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAG 594
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
R ALKL MR+ ++P + + +I+ L L AL EM
Sbjct: 595 RTQVALKLLRG-MRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMT 642
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+T P + +I+ Y + +E AL + + + ++NT ++ + G +
Sbjct: 258 ETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVS 317
Query: 140 RMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +M ++ PD +YN +++ + L++A + ++M+ R P TF TLI
Sbjct: 318 HALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 377
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC + R++EAL L ++ V + PD F LI LC VG+ L + EEM
Sbjct: 378 VALCSQNRLEEALDLARELT-VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 9/216 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I L RA +L ++ V P+E F ++ + +E AL+V
Sbjct: 194 DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHA-VAPDETTFTTLMQGFIEEGSIEAALRV 252
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
+M T + N L+N K+ R+ D ++K ++ PD +YN +H
Sbjct: 253 KTKMMETGCSPTRVTVNVLINGYC---KMGRVEDALGYIQKEIADGFEPDQVTYNTFVHC 309
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + A KV D ML+ P + T+ T+I L +DEA + M+ P
Sbjct: 310 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVD-RGCLP 368
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D F +LI LC+ L AL E+ + D
Sbjct: 369 DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPD 404
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 107/201 (53%), Gaps = 3/201 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y +II L + + DE + + ++K + P I + ++I + E A
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQG-MTPTVISYTSLIHGFCCGGKWEEA 296
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
++F+EM + VQ V +FN L++ + GK+ DL ++M ++ + P+ +YN L+ G
Sbjct: 297 KRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 356
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A ++F M + +P ++ + LI G C +V+EA+KL M++V +P
Sbjct: 357 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQV-GKRP 415
Query: 226 DAQVFASLIKGLCAVGELSLA 246
D + + +L+ GL G++ A
Sbjct: 416 DVKTYGALLTGLFQGGKVGDA 436
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPDACSYN 160
A Q F M N + SF LL+ + KI + +F Q+ +SPD C+ N
Sbjct: 79 QAFQFFHLMMYSNPTPPLSSFTHLLSGL---AKIKHYSQVFYLYNQMRLSGISPDCCTLN 135
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++ R+ + V +L+R P +VT+ TLI GLC+E R+ +A L M ++
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
P+A + +L+KGLC G +S+AL +EM+ +
Sbjct: 196 -GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 8/170 (4%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEM------SSFNVQRTVKSFNTLLNAMLTCGK 137
P I + ++ R + AL++ EM N + V S++ +++A+ +
Sbjct: 198 TPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRR 257
Query: 138 IDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
D DLF+ M+ + ++P SY L+HG + E+A ++F+EM+ + +QP +VTF
Sbjct: 258 EDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNV 317
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LI LC E +V EA L E M++ + P+ + SLI+G C VG+L+ A
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQ-RGIVPNLLTYNSLIEGFCLVGDLNSA 366
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I+ Y + +E A+++++ M + VK++ LL + GK+ L
Sbjct: 380 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 439
Query: 145 FQIMEKYVSP---------------DAC------------SYNI---------LMHGCVV 168
F +M+ Y P + C SYNI L+ G
Sbjct: 440 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 499
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +LE AW++F+++ + LQP +VT+ +I+ C +V +A L + M + PD
Sbjct: 500 AGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEK-NGCTPDKI 558
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+A+LI+G +L + MV+ + +D
Sbjct: 559 TYATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 592
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 24/241 (9%)
Query: 26 LQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
L ++ NP P PL F + +++ L + K + +V + +Q++ + + P
Sbjct: 86 LMMYSNPTP--------PLSSFTH-------LLSGLAKIKHYSQVFYLYNQMRL-SGISP 129
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ +++ + L V + + ++ TL+ + +I + LF
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189
Query: 146 QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR------RLQPTLVTFGTLI 198
M+K +P+A +Y LM G + + A K+ EML +P ++++ +I
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIII 249
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC + R DEA L E+M +V + P + SLI G C G+ A EMV +
Sbjct: 250 DALCKDRREDEARDLFEEM-KVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308
Query: 259 E 259
+
Sbjct: 309 Q 309
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y + + L + E ++ ++LK + E C +I +A LE A ++
Sbjct: 451 DLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNC-LIDGLCKAGKLETAWEL 509
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+++ +Q V ++N +++ G++ + LFQ MEK +PD +Y L+ G
Sbjct: 510 FEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFE 569
Query: 169 SRRLEDAWKVFDEMLKR 185
S++LE ++ M++R
Sbjct: 570 SKKLEKVVELLHMMVQR 586
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ + S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 136 AQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLIN 195
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 196 GLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 254
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A ++M R ++ D
Sbjct: 255 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPD 291
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ Y R +L+ ++ M + VQ V +++ L+N + K+D +L
Sbjct: 150 PSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADEL 209
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K + P+ ++ L+ G + R++ A +++ +ML + L P L+T+ TLIYGLC
Sbjct: 210 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 269
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L +DM R +KPD + +LI G C G L A ++ +++ I +D
Sbjct: 270 KGDLKQAHDLIDDMSR-KGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLD 326
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 181 SGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 240
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + D+M ++ L+P +T+ TLI
Sbjct: 241 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 300
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E + A + ++ +++ N++ D V+ +LI GLC G
Sbjct: 301 GCCKEGVLVSAFEHRKRLIQ-ENIRLDDVVYTALISGLCQEG 341
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 180 ASGVQPDVYT---YSVLINGLCKESKMDDADELFDEMLVKG-LVPNGVTFTTLIDGHCKN 235
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 236 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITY 295
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L A++ +++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 296 TTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLS 355
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V + PD + +I C G++ +EM R+
Sbjct: 356 V-GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 391
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 147 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 206
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 207 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLS-QSLL 265
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 266 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 302
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 95/182 (52%), Gaps = 6/182 (3%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 192 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDL 251
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++ ++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 252 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 311
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI GLC G A E+M+R +
Sbjct: 312 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEGRSVDA----EKMLREMLS 366
Query: 260 MD 261
+D
Sbjct: 367 VD 368
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ ++P + F +I +
Sbjct: 191 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LIPNGVTFTTLIDGRCKN 246
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 247 GRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTY 306
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 307 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 366
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V ++KPD + +I C G++ +EM R+
Sbjct: 367 V-DLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 402
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHALQVFD 111
+D + K F Q+K D +P + CN S G+ R+ + AL+ +
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMK-DYGFLPT-VESCNAYMSSLLGQGRV-DIALRFYR 227
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVS 169
EM + + N +++ GK+D+ +L Q ME+ + + D SYN L+ G
Sbjct: 228 EMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDV-SYNTLIAGHCEK 286
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A K+ + M K LQP +VTF TLI+G C +++ EA K+ +M V NV P+
Sbjct: 287 GLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV-NVAPNTVT 345
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G G+ +A F E+MV N I+ D
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRD 377
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + RA L+ A +VF EM + NV ++NTL+N G +
Sbjct: 306 PNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRF 365
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M + D +YN L+ G + A + E+ K L P TF LI G C+
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +L + M+R P+ Q F L+ C + A EMVR I +D+
Sbjct: 426 RKNADRGFELYKSMIRS-GCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDS 483
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
++ + +I+ + LL AL++ + M +Q V +FNTL++ K+ + +F
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332
Query: 147 IMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M+ V+P+ +YN L++G E A++ +++M+ +Q ++T+ LI+GLC +
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQA 392
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +A + +++ + N+ P++ F++LI G C + M+R+
Sbjct: 393 KTRKAAQFVKELDK-ENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRS 442
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 95/205 (46%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I RA E ++ ++K V P + + +I+ Y + E A +
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKA-VNVAPNTVTYNTLINGYSQQGDHEMAFRF 365
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+++M +QR + ++N L+ + K + + ++K + P++ +++ L+ G V
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + ++++ M++ P TF L+ C D A ++ +M+R ++ D++
Sbjct: 426 RKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR-RSIPLDSR 484
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ GL G+ L +EM
Sbjct: 485 TVHQVCNGLKHQGKDQLVKKLLQEM 509
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 47/294 (15%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL+ +K+P+ A LF + +P + ++ + Y I+ +L A
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSEA 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
+M V +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVTHVGRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDRALDVFKRMREIFGCEPGIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME---------------------------------- 149
S+NTLLNA + + ++ LF E
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWM 175
Query: 150 --KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SY+ +++ + +L+DA ++FDEM +RR+ P + + LI G E
Sbjct: 176 WKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDH 235
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
A++L + ++ +V P+ + +I GL G + L + M +N+ E D
Sbjct: 236 KMAMQLWDKLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKD 289
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 122/244 (50%), Gaps = 11/244 (4%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+KD K+A+QL+ E + P N+ ++++I+ L + D+ +I ++K
Sbjct: 232 EKDHKMAMQLWDKL------LEDSSVYP---NVKTHNIMISGLSKCGRVDDCLKIWDRMK 282
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ R + + ++I ++ A VF+E+ V ++NT+L CGKI
Sbjct: 283 QNERE-KDLYTYSSLIHGLCDEGNVDKAESVFNELVERKAFIDVVTYNTMLGGFCRCGKI 341
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L++IME+ S + SYNIL+ G + + ++++A ++ M + T+G I
Sbjct: 342 KESLELWRIMEQRNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFI 401
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+GLC+ V++AL + ++ + D +AS+I LC L A +EM ++ +
Sbjct: 402 HGLCVNGYVNKALGVMQE-VESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGV 460
Query: 259 EMDA 262
E+++
Sbjct: 461 ELNS 464
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+ ++I + R LE A + EMS V+ N L+ ++ ++ + L + M
Sbjct: 432 YASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMG 491
Query: 150 KYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K P SYNIL+ G + + +A EML+ L+P L T+ L+ GLC + +++
Sbjct: 492 KNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIE 551
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
AL+L ++ ++PD + LI GLC+VG+L A+
Sbjct: 552 LALELWHQFLQS-GLEPDVMMHNILIHGLCSVGKLDDAM 589
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+++I L A F E + ++ + + P+ + ++ R R +E AL+++
Sbjct: 499 VVSYNILICGLCEAGKFGEASAFVKEMLENG-LKPDLKTYSILLGGLCRDRKIELALELW 557
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+ ++ V N L++ + + GK+D MT + + + + + +YN LM G
Sbjct: 558 HQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGYFKV 617
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R A ++ M K LQP ++++ T++ GLCL RV A++ +D R + + P
Sbjct: 618 RDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDD-ARNHGIFPTVYT 676
Query: 230 FASLIKGL 237
+ L++ +
Sbjct: 677 WNILVRAV 684
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHAL 107
N++ Y+++I L DE I + IF + + G + AL
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNG---YVNKAL 414
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
V E+ S V ++ ++++ + +++ ++L + M K+ V ++ N L+ G
Sbjct: 415 GVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ RL DA + M K PT+V++ LI GLC + EA ++M+ +KPD
Sbjct: 475 IRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLE-NGLKPD 533
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ L+ GLC ++ LAL + +++ +E D
Sbjct: 534 LKTYSILLGGLCRDRKIELALELWHQFLQSGLEPD 568
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VV I+ C + A A EM ++ +K+++ LL + KI+
Sbjct: 499 VVSYNILICGLC----EAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELAL 554
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L+ Q ++ + PD +NIL+HG +L+DA V M R LVT+ TL+ G
Sbjct: 555 ELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGY 614
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
++R + M ++PD + +++KGLC +S A+ F
Sbjct: 615 -FKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEF 661
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 120/227 (52%), Gaps = 6/227 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++ + + LKP RY L++ K+G++ E +++L ++ +++P+ +++ +I
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSF---EAEKVLREMM-SQKIIPDNVVYTTLIHG 372
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + + A + FDEM S + ++ TL+ GK+ +LF +++ + + PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ + + +A+ + +EM++ + P +VT+G LI GLC +D A +L
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELL- 491
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D MR ++ + ++ S++ G+C G + A+ +EM I+ DA
Sbjct: 492 DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA 538
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 10/227 (4%)
Query: 37 NNTEA--QPLKPF-----RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
NN+E +K F +N Y++II L R E ++L Q+ + P+ +
Sbjct: 237 NNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST-PDVVS 295
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIM 148
+ VI Y L+ AL++ D+M ++ ++N+++ + GK + L ++M
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ + PD Y L+HG + A K FDEML +++ P +T+ TLI G +V
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E L +M+ +KPD + +LI C GE+ A EMV+
Sbjct: 416 EPQNLFHEMIS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQ 461
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH + P + + +I + L+ A ++ DEM +Q V +N+++N +
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGIC 514
Query: 134 TCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G I++ L + ME + PDA +Y ++ ++ A K+ EML R LQPT+V
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV 574
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
TF L+ G C+ +++ +L M+ + PDA + +L+K C
Sbjct: 575 TFNVLMNGFCMLGMLEDGDRLLGWMLE-KGIVPDAITYNTLMKQHC 619
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 114/246 (46%), Gaps = 38/246 (15%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y+ ++ + +A ++ +++ +++ + P+ I + VI Y R ++
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME-VAGIDPDAITYTTVIDAYCRLGDID 555
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRM-------------------- 141
A ++ EM +Q TV +FN L+N G + DR+
Sbjct: 556 KAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615
Query: 142 ------------TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
T +++ M + V+PD+ +YNIL+ G +R L++AW ++ EM+++
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
PT+ ++ LI + + EA +L E+ MR + + D +++ + G++ + L
Sbjct: 676 PTVTSYNALIKRFYKKRKFXEARELFEE-MRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734
Query: 249 FKEEMV 254
+E +
Sbjct: 735 LCDEAI 740
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNI 161
L A ++ D++ S+ + TV S N L+ + + I+ +F E +S + SYNI
Sbjct: 206 LSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVF--CEYGISWNTTSYNI 263
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++++A ++ +M R P +V++ T+I G C + +ALKL +D M++
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDD-MQIK 322
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KP+ + S+I LC +G+ A EM+ KI
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359
>gi|212275340|ref|NP_001130930.1| uncharacterized protein LOC100192035 [Zea mays]
gi|195614146|gb|ACG28903.1| hypothetical protein [Zea mays]
gi|219885707|gb|ACL53228.1| unknown [Zea mays]
gi|413935208|gb|AFW69759.1| hypothetical protein ZEAMMB73_548432 [Zea mays]
Length = 748
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Query: 52 LHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L Y+ ++ + GR M ++I + + D V P+ + +I +G + +E A++
Sbjct: 209 LSYNAVLKAILCRGREAM---ARRIYNAMIADG-VAPDVSTYNTLIWGFGLCKKMETAVR 264
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
VF +M V V ++NTLLNA + G ++ +F M + ++ SYN+++ G V
Sbjct: 265 VFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYV 324
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPD 226
R+E+A +F EM ++ L+ + TF L+ GLC + RV EA K +DM D
Sbjct: 325 EGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRLTPKD 384
Query: 227 AQVFASLIKGLCAVGELSLAL 247
VF L+ LC G+L AL
Sbjct: 385 KSVFLRLVTTLCKAGDLDGAL 405
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L++ L +M + + ++ V P+E +IS YGRA + + A+++F M
Sbjct: 140 FALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMM 199
Query: 114 SSFNVQRTVKSFNTLLNAMLT-----------------------------------CGKI 138
+ V RT S+N +L A+L C K+
Sbjct: 200 PNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKM 259
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+ +F M+ + V+PD +YN L++ V + LE A KVFDEM + V++ +
Sbjct: 260 ETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVM 319
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
I G RV+EA+ L +M ++ + FA+L+ GLC
Sbjct: 320 IKGYVEGNRVEEAVALFAEMAE-KGLRLSEKTFAALMPGLC 359
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ +K V P+ + +++ + RA LE A +VFDEM
Sbjct: 246 YNTLIWGFGLCKKMETAVRVFGDMKGHG-VTPDVTTYNTLLNAWVRAGDLESARKVFDEM 304
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG-CVVSRR 171
+ +R S+N ++ + +++ LF ++ EK + ++ LM G C R
Sbjct: 305 AGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGR 364
Query: 172 LEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ +A K D+M +RRL P F L+ LC +D AL++ + +V D + +
Sbjct: 365 VAEARKAVDDMAERRLTPKDKSVFLRLVTTLCKAGDLDGALEVHWKSGQFKHVLVDPRQY 424
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
L++GLCA G+ A+ +E++
Sbjct: 425 GVLMEGLCAGGKCETAIEVLDELM 448
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHA-LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
PE F ++ R+L HA V D M SF+V + L++A
Sbjct: 135 PEGATFALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVK 194
Query: 144 LFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF++M P A SYN ++ + R A ++++ M+ + P + T+ TLI+G
Sbjct: 195 LFRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFG 254
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L +++ A+++ DM + + V PD + +L+ G+L A +EM E ++
Sbjct: 255 LCKKMETAVRVFGDM-KGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNS 313
>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
montevidense]
Length = 481
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LQWDEDLWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P ++NI++ G
Sbjct: 100 VKLFHKMEELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETAXRFFEDMKSRDITPDVITYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+LIKG AV + AL EEM
Sbjct: 219 TVVTHTTLIKGYVAVDRVDDALRLVEEM 246
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAX 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + ++PD +YN +++G +++E+A K F EM R ++PT+VT TLI G
Sbjct: 171 RFFEDMKSRDITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
RVD+AL+L E+ M+ + +KP+A +++ + GLC ++S A +EMV I
Sbjct: 231 VAVDRVDDALRLVEE-MKGFGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYI 286
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 41/258 (15%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRA 100
P K +++ + L+I G+A + E ++ H+++ R + + VI GR
Sbjct: 72 PKKGLQWDEDLWVLMIDSYGKAGIVQESVKLFHKMEELGVERTIKSYDVLFKVILRRGRY 131
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
+ A + F++M S ++ T +FN ++ GK++ F+ M+ + ++PD +Y
Sbjct: 132 MM---AKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMKSRDITPDVITY 188
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-------------------------- 193
N +++G +++E+A K F EM R ++PT+VT
Sbjct: 189 NTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMKG 248
Query: 194 ---------FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ T + GLC ++ EA ++M+ Y D +F LI G C G L
Sbjct: 249 FGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISGQCKAGNLD 308
Query: 245 LALGFKEEMVRNKIEMDA 262
A + M+R + +A
Sbjct: 309 AAADVLKAMIRLSVPTEA 326
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 89/178 (50%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ + ++D
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ + G + ++ +A EM+ + + PT + F LI G
Sbjct: 241 RLVEEMKGFGIKPNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C + A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAVQYDKAISLLDKLIEKDI 357
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 112/216 (51%), Gaps = 9/216 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L+ Y+ II L +++ + Q +++ ++P+ I + ++++ Y +A L+ AL +
Sbjct: 348 TLVTYNAIIHGLLKSEQVEAAQLKFAEMR-AMGLLPDLITYNSMLNGYCKAGNLKEALWL 406
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++ + TV ++NTL++ G ++ L + M E+ PD C+Y ILM+G
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHK 466
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKP 225
R L A + FDEML + LQP + T I C EL + + A +L+E MM + + P
Sbjct: 467 VRNLPMAREFFDEMLSKGLQPDCFAYNTRI---CAELILGDTHKAFQLREVMM-LKGIYP 522
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +I GLC G L A K +MV + ++ D
Sbjct: 523 DTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPD 558
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 4/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++ Y+ ++ + DE +L +++ + ++ + VISF R LE+A +
Sbjct: 242 TIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAK 301
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+ D M + + + ++N L+ A+L G + ++ L ME + + P +YN ++HG +
Sbjct: 302 LVDSMR-LSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLL 360
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S ++E A F EM L P L+T+ +++ G C + EAL L D+ R + P
Sbjct: 361 KSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRA-GLAPTV 419
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C +G L A KEEMV
Sbjct: 420 LTYNTLIDGYCRLGGLEEARRLKEEMV 446
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I R +E +++ ++ + P+ + +++ + R L A +
Sbjct: 418 TVLTYNTLIDGYCRLGGLEEARRLKEEMV-EQGCFPDVCTYTILMNGSHKVRNLPMAREF 476
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FDEM S +Q ++NT + A L G + L ++M K + PD +YN+++ G
Sbjct: 477 FDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCK 536
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ L+DA + +M+ LQP +T+ LI+ C + EA KL M+ ++P
Sbjct: 537 TGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSD-GLQPSVV 595
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ LI C G L A G+ +M+ IE
Sbjct: 596 TYTILIHTCCRRGNLYSAYGWFRKMLDVGIE 626
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 4/216 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LK + + Y++II L + + + + ++ D + P+ I + +I +
Sbjct: 513 EVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDG-LQPDCITYTCLIHAHCE 571
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
LL A ++ + M S +Q +V ++ L++ G + F ++++ + P+ +
Sbjct: 572 RGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEIT 631
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+H + R A+ F EML+R L P T+ LI G C E +A++L +M
Sbjct: 632 YNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMH 691
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + PD +L KG G + A+ + E +V
Sbjct: 692 Q-NGIPPDYCTHNALFKGF-DKGHMYHAIEYLENIV 725
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V+PD N ++ + R +D V+ EML+ ++PT+VT+ TL+ E R DEA
Sbjct: 204 VAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEAS 263
Query: 212 KLKEDM 217
L ++M
Sbjct: 264 MLLKEM 269
>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
javanica]
Length = 431
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G ++D ++FDEML + L P VTF TLI G C RVD A+++ + M+ +
Sbjct: 221 GLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QXLX 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +L GLC G+L+ A G +EM ++ D
Sbjct: 280 PDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPD 316
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLXKESXMDDXNELFDEMLXKG-LVPNSVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S + ++NTL + G +++ L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 381 V-GLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRN 416
>gi|297849542|ref|XP_002892652.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338494|gb|EFH68911.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 403
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 133/335 (39%), Gaps = 82/335 (24%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNN----TEAQPLKP-FRYNLLHYDLI 57
++ +S F L SL QK + L L K+ N NPN + L P + + + + +
Sbjct: 23 QSSSSSIFTLNSLTSKQKKSRATLSLLKSEN-NPNRILEICRSASLTPDYHVDRIIFSVA 81
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ L + K F V Q+L + E I YGRA +L+ ++Q F ++ +
Sbjct: 82 VVTLAKEKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRDLEQYE 141
Query: 118 VQRTVKSFNTLLNAMLTC------------------------------------GKIDRM 141
+ RTVKS N LL A L G
Sbjct: 142 IPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSLS 201
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKV---------------------- 178
+ ME K+V P A S+ +++ G + +D KV
Sbjct: 202 YSIVAEMERKWVKPTASSFGLMIDGFYKEEKFDDVRKVMRMMDEFGVHVGVATYNIMIQC 261
Query: 179 -------------FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VK 224
D ++ R++P VT+ LI+G C E +DEA+ L E M VY+ K
Sbjct: 262 LCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVM--VYSGYK 319
Query: 225 PDAQVFASLIKGLCAVGELSLALGF-KEEMVRNKI 258
PD++ + +LI+ LC G+ AL +E M +N +
Sbjct: 320 PDSECYFTLIRCLCKGGDFETALILCRESMEKNWV 354
>gi|242061532|ref|XP_002452055.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
gi|241931886|gb|EES05031.1| hypothetical protein SORBIDRAFT_04g017800 [Sorghum bicolor]
Length = 810
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 109/213 (51%), Gaps = 17/213 (7%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL+LFKN + + N++ Y+ ++ L RA+ +++ +++ ++ D +
Sbjct: 496 ALELFKNMS-------------CKRNVVTYNYMLKGLCRAEQWEDAGKLVAEMVKD-ECL 541
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P E+ F +IS+ + +E A++VF++M +N V ++TL+N + +D L
Sbjct: 542 PNEVTFSTLISYLCQKGFVECAIEVFEKMPKYNCMPNVIIYSTLINGLSDQECVDDALKL 601
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M PD Y+ + G + R EDA ++ EM+++ P VTF LI LC +
Sbjct: 602 LNDMP--CKPDTICYSAALKGLCRAERWEDAGELILEMIRKNCLPDEVTFSILINNLCHK 659
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++ A ++ E M++ Y P+ +++SLI G
Sbjct: 660 GFLESATEVSELMLK-YECMPNVFIYSSLINGF 691
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 104/192 (54%), Gaps = 4/192 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P++ N + Y ++ L RA +D+V +++ ++ + ++ +E+ F +I + L+++
Sbjct: 402 PWKPNTVCYRSVLKGLCRADRWDDVGKLVAEMIRN-QLNLDEVTFGLIIDCLCQKGLVDY 460
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
+V EM+ F + +N+L+N G +D +LF+ M + +YN ++ G
Sbjct: 461 GAEVLREMTKFGCSPDIIIYNSLINGFSENGSVDDALELFKNMS--CKRNVVTYNYMLKG 518
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + EDA K+ EM+K P VTF TLI LC + V+ A+++ E M + YN P
Sbjct: 519 LCRAEQWEDAGKLVAEMVKDECLPNEVTFSTLISYLCQKGFVECAIEVFEKMPK-YNCMP 577
Query: 226 DAQVFASLIKGL 237
+ ++++LI GL
Sbjct: 578 NVIIYSTLINGL 589
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 4/202 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
PF N ++ L K +D+ +++L ++ + P ++ F +I + L +
Sbjct: 198 PFAPNSYTNSTLLKGLCSNKEWDDAEELLSEMIR-SGCPPNDLTFGMIIHSLCQNGLADR 256
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A+ V D+MS R V +N +++ + G+++ LF M PD SYN +M G
Sbjct: 257 AMGVLDQMSKCRCTRGVIVYNEIISCLAELGRVEEALHLFDQMP--CKPDIFSYNTVMKG 314
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R EDA + M+++ P VTF T+I LC VD A+++ E M + Y KP
Sbjct: 315 LCRDGRWEDAGTLIAGMVRKDCPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPK-YGCKP 373
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
D +++L+ L G + AL
Sbjct: 374 DNFTYSALVNALSERGCVDDAL 395
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 21/236 (8%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
LA L R+++ AL LF + P KP ++ Y+ ++ L R +++
Sbjct: 283 LAELGRVEE----ALHLF----------DQMPCKP---DIFSYNTVMKGLCRDGRWEDAG 325
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++ + P+E+ F VIS+ L++ A++V ++M + + +++ L+NA
Sbjct: 326 TLIAGMVRKD-CPPDEVTFNTVISYLCHRGLVDCAMEVVEQMPKYGCKPDNFTYSALVNA 384
Query: 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+ G +D +L + + P+ Y ++ G + R +D K+ EM++ +L
Sbjct: 385 LSERGCVDDALELLRTIP--WKPNTVCYRSVLKGLCRADRWDDVGKLVAEMIRNQLNLDE 442
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
VTFG +I LC + VD ++ +M + + PD ++ SLI G G + AL
Sbjct: 443 VTFGLIIDCLCQKGLVDYGAEVLREMTK-FGCSPDIIIYNSLINGFSENGSVDDAL 497
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P + + + Y + L RA+ +++ +++ ++ +P+E+ F +I+ LE
Sbjct: 606 PCKPDTICYSAALKGLCRAERWEDAGELILEMIRKN-CLPDEVTFSILINNLCHKGFLES 664
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A +V + M + V +++L+N + R D Q++ PD Y+ +
Sbjct: 665 ATEVSELMLKYECMPNVFIYSSLINGF---AEQYRAEDALQLLRNMPCEPDTICYSAALK 721
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G ++R EDA ++ EM +++ TF LI LC VD A ++ E M VY
Sbjct: 722 GLCRAKRWEDARELIAEMFRKQCPLDEATFSMLIGSLCQNGLVDMATEVFE-QMSVYGCS 780
Query: 225 PDAQVFASLIKG 236
P+ ++ +SL+ G
Sbjct: 781 PNRKIHSSLVNG 792
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 9/205 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + D+ ++L+ D P+ I + + RA E A ++
Sbjct: 578 NVIIYSTLINGLSDQECVDDALKLLN----DMPCKPDTICYSAALKGLCRAERWEDAGEL 633
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM N +F+ L+N + G ++ T++ ++M KY P+ Y+ L++G
Sbjct: 634 ILEMIRKNCLPDEVTFSILINNLCHKGFLESATEVSELMLKYECMPNVFIYSSLINGFAE 693
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R EDA ++ M +P + + + GLC R ++A +L +M R D
Sbjct: 694 QYRAEDALQLLRNM---PCEPDTICYSAALKGLCRAKRWEDARELIAEMFR-KQCPLDEA 749
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
F+ LI LC G + +A E+M
Sbjct: 750 TFSMLIGSLCQNGLVDMATEVFEQM 774
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 9/201 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L D+ ++L + P + + +V+ RA + ++ EM
Sbjct: 378 YSALVNALSERGCVDDALELLRTIPWK----PNTVCYRSVLKGLCRADRWDDVGKLVAEM 433
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ +F +++ + G +D ++ + M K+ SPD YN L++G + +
Sbjct: 434 IRNQLNLDEVTFGLIIDCLCQKGLVDYGAEVLREMTKFGCSPDIIIYNSLINGFSENGSV 493
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA ++F M +R +VT+ ++ GLC + ++A KL +M++ P+ F++
Sbjct: 494 DDALELFKNMSCKR---NVVTYNYMLKGLCRAEQWEDAGKLVAEMVK-DECLPNEVTFST 549
Query: 233 LIKGLCAVGELSLALGFKEEM 253
LI LC G + A+ E+M
Sbjct: 550 LISYLCQKGFVECAIEVFEKM 570
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDEMLKRR 186
L+ + G++D + E+ + DA + N L+ G C RL DA ++ L
Sbjct: 108 LIKKLCAAGRLDDAERVLGASERAGTADAVTRNTLVAGYCRAGGRLADAERMLAS-LALS 166
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+VT+ TL+ G C E R+++A +L DM P++ ++L+KGLC+ E A
Sbjct: 167 GSADVVTYNTLVAGYCREGRLNDARRLVADM----PFAPNSYTNSTLLKGLCSNKEWDDA 222
Query: 247 LGFKEEMVRN 256
EM+R+
Sbjct: 223 EELLSEMIRS 232
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 37/248 (14%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLE 104
P R + L+I KL A D+ +++L + + + +++ Y RA L
Sbjct: 97 PERPAAVPCTLLIKKLCAAGRLDDAERVLGA--SERAGTADAVTRNTLVAGYCRAGGRLA 154
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164
A ++ ++ + V ++NTL+ G+++ L M +P++ + + L+
Sbjct: 155 DAERMLASLA-LSGSADVVTYNTLVAGYCREGRLNDARRLVADMP--FAPNSYTNSTLLK 211
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----- 219
G ++ +DA ++ EM++ P +TFG +I+ LC D A+ + + M +
Sbjct: 212 GLCSNKEWDDAEELLSEMIRSGCPPNDLTFGMIIHSLCQNGLADRAMGVLDQMSKCRCTR 271
Query: 220 ---VYN-----------------------VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
VYN KPD + +++KGLC G A M
Sbjct: 272 GVIVYNEIISCLAELGRVEEALHLFDQMPCKPDIFSYNTVMKGLCRDGRWEDAGTLIAGM 331
Query: 254 VRNKIEMD 261
VR D
Sbjct: 332 VRKDCPPD 339
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 106/199 (53%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + +++++ L RAK + +L +L+ D +P + + +VIS Y +A +E AL V
Sbjct: 252 DTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSV 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+++M + ++N L+N ++ ++ Q++ + PD +++ L+ G
Sbjct: 312 YNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCR 371
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDA 227
+L+DA +++ EM + +QP + TF +I+ LC + R EAL L+E MR ++ P
Sbjct: 372 CGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRA-DIAPQT 430
Query: 228 QVFASLIKGLCAVGELSLA 246
++ +I LC G++ A
Sbjct: 431 FIYNPVIDILCKGGQVEEA 449
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++P+ YN L +L+I + GRA+ + + D P+ F VI R
Sbjct: 180 IEPYAYNNL-LNLLIAR-GRAQ---DAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNF 234
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N L++ + +++R DL + +++ P+ +Y
Sbjct: 235 QKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTS 294
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R+EDA V+++ML+ +P VT+ LI G L ++ A+++ ++ +
Sbjct: 295 VISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLI-LR 353
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD F+SLI G C G+L A+ +EM ++ I+
Sbjct: 354 RCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQ 391
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 2/205 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +IT L R+ + ++ Q+ + +P+ + F V A LL+ A+ + +
Sbjct: 114 YSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKA 173
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
S F + ++N LLN ++ G+ LF+ I + SPD S+N+++ G
Sbjct: 174 SQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGN 233
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ A ++ + M + P +T L+ GLC +V+ L + R P+ +
Sbjct: 234 FQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYT 293
Query: 232 SLIKGLCAVGELSLALGFKEEMVRN 256
S+I G C G + AL +M+ +
Sbjct: 294 SVISGYCKAGRMEDALSVYNDMLES 318
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+++I G+A + ++ QL R P+ + F ++I Y R L+ A+
Sbjct: 321 RPNTVTYNVLINGYGKALDMESAVRMYRQLIL-RRCPPDVVTFSSLIDGYCRCGQLDDAM 379
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-----MEKYVSPDACSYNIL 162
+++ EM ++Q V +F+ +++++ K +R + M ++P YN +
Sbjct: 380 RIWKEMGQHHIQPNVYTFSIIIHSLC---KQNRSAEALGFLRELNMRADIAPQTFIYNPV 436
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ ++E+A + +M ++ P T+ LI G C++ R+ EA+ L M+
Sbjct: 437 IDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVET-G 495
Query: 223 VKPDAQVFASLIKGLCAVG 241
+PD S I + G
Sbjct: 496 CRPDKITVNSFISCVLKAG 514
>gi|194690470|gb|ACF79319.1| unknown [Zea mays]
Length = 671
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Query: 52 LHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L Y+ ++ + GR M ++I + + D V P+ + +I +G + +E A++
Sbjct: 132 LSYNAVLKAILCRGREAM---ARRIYNAMIADG-VAPDVSTYNTLIWGFGLCKKMETAVR 187
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
VF +M V V ++NTLLNA + G ++ +F M + ++ SYN+++ G V
Sbjct: 188 VFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVMIKGYV 247
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPD 226
R+E+A +F EM ++ L+ + TF L+ GLC + RV EA K +DM D
Sbjct: 248 EGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGRVAEARKAVDDMAERRLTPKD 307
Query: 227 AQVFASLIKGLCAVGELSLAL 247
VF L+ LC G+L AL
Sbjct: 308 KSVFLRLVTTLCKAGDLDGAL 328
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L++ L +M + + ++ V P+E +IS YGRA + + A+++F M
Sbjct: 63 FALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVKLFRMM 122
Query: 114 SSFNVQRTVKSFNTLLNAMLT-----------------------------------CGKI 138
+ V RT S+N +L A+L C K+
Sbjct: 123 PNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFGLCKKM 182
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+ +F M+ + V+PD +YN L++ V + LE A KVFDEM + V++ +
Sbjct: 183 ETAVRVFGDMKGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNSVSYNVM 242
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
I G RV+EA+ L +M ++ + FA+L+ GLC
Sbjct: 243 IKGYVEGNRVEEAVALFAEMAE-KGLRLSEKTFAALMPGLC 282
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G K + ++ +K V P+ + +++ + RA LE A +VFDEM
Sbjct: 169 YNTLIWGFGLCKKMETAVRVFGDMKGHG-VTPDVTTYNTLLNAWVRAGDLESARKVFDEM 227
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG-CVVSRR 171
+ +R S+N ++ + +++ LF ++ EK + ++ LM G C R
Sbjct: 228 AGEGTERNSVSYNVMIKGYVEGNRVEEAVALFAEMAEKGLRLSEKTFAALMPGLCDDQGR 287
Query: 172 LEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ +A K D+M +RRL P F L+ LC +D AL++ + +V D + +
Sbjct: 288 VAEARKAVDDMAERRLTPKDKSVFLRLVTTLCKAGDLDGALEVHWKSGQFKHVLVDPRQY 347
Query: 231 ASLIKGLCAVGELSLALGFKEEMV 254
L++GLCA G+ A+ +E++
Sbjct: 348 GVLMEGLCAGGKCETAIEVLDELM 371
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHA-LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
PE F ++ R+L HA V D M SF+V + L++A
Sbjct: 58 PEGATFALLVPALASRRMLNHARCLVLDTMPSFSVAPDEPTLAALISAYGRAAIPQEAVK 117
Query: 144 LFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF++M P A SYN ++ + R A ++++ M+ + P + T+ TLI+G
Sbjct: 118 LFRMMPNIGVPRTALSYNAVLKAILCRGREAMARRIYNAMIADGVAPDVSTYNTLIWGFG 177
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L +++ A+++ DM + + V PD + +L+ G+L A +EM E ++
Sbjct: 178 LCKKMETAVRVFGDM-KGHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMAGEGTERNS 236
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 107/210 (50%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I R M E +I ++ + + + + +++ + +LL A +FDEM
Sbjct: 363 YTILINGYCRNGMMSEALEIRDKMLEQGCAL-DVVAYNTILNGLCKKKLLADANALFDEM 421
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V +F TL++ G + + LF IM +K + PD +YNIL+ G + +
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEM 481
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A ++++EM+ R++ P +++ L+ G C V EA +L ++M+R +KP +
Sbjct: 482 EKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIR-KGIKPTLVTCNT 540
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+IKG C G+LS A F +M+ + D+
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDS 570
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ + R F E + I + H V P+ I F ++I R L+ AL F +M
Sbjct: 293 YNTLLVESCRNNNFLEAKDIFSDMLHRG-VSPDLISFSSLIGVSSRNGHLDQALMYFRDM 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + + L+N G + ++ +++E+ + D +YN +++G + L
Sbjct: 352 KTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLL 411
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA +FDEM++R + P TF TLI+G C E + +AL L +M N+KPD +
Sbjct: 412 ADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF-GIMTQKNIKPDIVTYNI 470
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C E+ A EM+ KI
Sbjct: 471 LIDGFCKTTEMEKANELWNEMISRKI 496
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + D+V+ L ++ + + + + +I+ Y R LL A +V
Sbjct: 184 NVYTLNIMVNALCKDHKIDDVKPFLIDMEQKG-IFADIVTYNTLINAYCREGLLGEAFEV 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ MS ++ T+ ++N ++N + G+ R +F +++ +SPD +YN L+
Sbjct: 243 MNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCR 302
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A +F +ML R + P L++F +LI +D+AL D M+ + PD
Sbjct: 303 NNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRD-MKTSGLVPDNV 361
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ LI G C G +S AL +++M+ +D
Sbjct: 362 IYTILINGYCRNGMMSEALEIRDKMLEQGCALDV 395
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ Y+++I + ++ ++ +++ ++ P I + +++ Y +
Sbjct: 459 KNIKPDIVTYNILIDGFCKTTEMEKANELWNEMI-SRKIFPNHISYAILVNGYCNLGFVS 517
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILM 163
A +++DEM ++ T+ + NT++ G + + + L +++ + V PD+ +YN L+
Sbjct: 518 EAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLI 577
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G V ++ A+ + ++M + LQP +VT+ ++ G C + R+ EA + M+ +
Sbjct: 578 NGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIE-RGI 636
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD + +LI G + L A F +EM++
Sbjct: 637 DPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQ 668
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 112/247 (45%), Gaps = 36/247 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + K+ + + ++ + VVP+ F +I + + + AL +
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMV-ERGVVPDFCTFTTLIHGHCKEGNMGKALSL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F M+ N++ + ++N L++ ++++ +L+ +++ + + P+ SY IL++G
Sbjct: 453 FGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCN 512
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM----------- 217
+ +A++++DEM+++ ++PTLVT T+I G C + +A + M
Sbjct: 513 LGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSIT 572
Query: 218 -----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M ++PD + ++ G C G + A +M+
Sbjct: 573 YNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMI 632
Query: 255 RNKIEMD 261
I+ D
Sbjct: 633 ERGIDPD 639
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 93/189 (49%), Gaps = 5/189 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVF 110
L +DL+I +A+ +E L+ +V I CN ++ + ++ A +V+
Sbjct: 116 LVFDLLIRSYVQARKLNEGTDTFKILRRKGFLV--SINACNSLLGGLVKMGWVDLAWEVY 173
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVS 169
+E++ ++ V + N ++NA+ KID + ME K + D +YN L++
Sbjct: 174 NEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCRE 233
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L +A++V + M + L+PTL T+ +I GLC + R A + +M+ + + PD
Sbjct: 234 GLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSI-GLSPDTTT 292
Query: 230 FASLIKGLC 238
+ +L+ C
Sbjct: 293 YNTLLVESC 301
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 21/239 (8%)
Query: 33 NPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--- 89
NPN T + P F L+ L+ + R+K + Q ++ ++ + V EI+
Sbjct: 48 NPNQEPTSSAPPDSF---LVEKILLNLRRVRSKRLSDAQTLILRMIRRSGVSRVEIVESL 104
Query: 90 -----FCNV--------ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
C V I Y +AR L F + ++ + N+LL ++ G
Sbjct: 105 ISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMG 164
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+D +++ +I + + + NI+++ +++D +M ++ + +VT+
Sbjct: 165 WVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYN 224
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI C E + EA ++ + M +KP + ++I GLC G A G EM+
Sbjct: 225 TLINAYCREGLLGEAFEVM-NSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEML 282
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + L+ + +I R+ + + L ++ + V P+ I + +I+ + + ++
Sbjct: 529 KGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEG-VGPDSITYNTLINGFVKGEYMD 587
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A + ++M + +Q V ++N +LN G++ + +++E+ + PD +Y L+
Sbjct: 588 KAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLI 647
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQP 189
+G V L++A++ DEML+R P
Sbjct: 648 NGYVSQDNLKEAFRFHDEMLQRGFVP 673
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L+I L A M + Q + Q+K T +P+ + ++ YG++ ++ +++ EM
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
S+ + + N +++ ++ G +D DL+ + ++ SP AC+Y L+ G S R
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L +A ++F+ ML +P + LI G D A L + M++ V+PD + ++
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRPDLKTYS 965
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ LC VG + L + +E+ + + D
Sbjct: 966 VLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 24/242 (9%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+ LLR+ + AL+LF N E+ +KP Y Y + I G++ D V
Sbjct: 405 ICGLLRVHRLDD-ALELF-------GNMESLGVKPTAYT---YIVFIDYYGKSG--DSVS 451
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFY-----GRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ K T+ + I+ CN S Y GR R A Q+F + + ++N
Sbjct: 452 ALETFEKMKTKGIAPNIVACNA-SLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYN 507
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
++ G+ID L ++ME PD N L++ + R+++AWK+F M +
Sbjct: 508 MMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 567
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+L+PT+VT+ TL+ GL ++ EA++L E M++ P+ F +L LC E++L
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 246 AL 247
AL
Sbjct: 627 AL 628
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 3/215 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E K N++ + + L +A E +QI + LK D +VP+ + + ++ Y +
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK-DIGLVPDSVTYNMMMKCYSK 515
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
++ A+++ EM + V N+L+N + ++D +F M E + P +
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + ++++A ++F+ M+++ P +TF TL LC V ALK+ MM
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V PD + ++I GL G++ A+ F +M
Sbjct: 636 DMGCV-PDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++++I+ L +A D+ + + L D P + +I ++ L A Q+
Sbjct: 854 NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL 913
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+ M + + +N L+N G+ D LF+ M K V PD +Y++L+ +
Sbjct: 914 FEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 973
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+++ F E+ + L P +V + +I GL R++EAL L +M + PD
Sbjct: 974 VGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLY 1033
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ SLI L G + A E+ R +E
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLE 1064
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LKP N+ + + I LGRA +E +IL ++ D P+ + + +I
Sbjct: 250 ETLGLKP---NVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCT 305
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACS 158
AR L+ A +VF++M + + ++ TLL+ +D + + MEK PD +
Sbjct: 306 ARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVT 365
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ IL+ + +A+ D M + + P L T+ TLI GL R+D+AL+L +M
Sbjct: 366 FTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ VKP A + I G+ AL E+M
Sbjct: 426 SL-GVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 459
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL DLI + L A + D +L + + I +I + + + A +
Sbjct: 713 NLFWEDLIGSILAEAGI-DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTL 771
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
F++ + VQ + ++N L+ +L I+ D+F Q+ PD +YN L+
Sbjct: 772 FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG 831
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S ++++ ++++ EM + +T +I GL VD+AL L D+M + P A
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ LI GL G L A E M+
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGML 918
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
KP R + Y ++ + + D V+Q +++ D V P+ + F ++ +A
Sbjct: 325 KPDR---VTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV-PDVVTFTILVDALCKAGNFG 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A D M + + ++NTL+ +L ++D +LF ME V P A +Y + +
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
S A + F++M + + P +V +Y L R EA ++ + + +
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GL 499
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD+ + ++K VGE+ A+ EM+ N E D
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N Y+++I G+A D + ++ + V P+ + ++ ++ L
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVDCLCMVGRVDEGL 981
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHG 165
F E+ + V +N ++N + +++ LF M+ + ++PD +YN L+
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILN 1041
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
++ +E+A K+++E+ + L+P + TF LI G L + + A + + M+
Sbjct: 1042 LGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
LE VFD M ++R ++ T+ ++ G + + + M ++ +A SYN
Sbjct: 134 LEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNG 193
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+H + SR +A +V+ M+ +P+L T+ +L+ GL +D + L ++ M
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE-METL 252
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+KP+ F I+ L G+++ A
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEA 277
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 5/214 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP ++ Y+ ++ LG+ E ++ + P I F + + +
Sbjct: 569 LKP---TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDEV 624
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
AL++ +M V ++NT++ ++ G++ F M+K V PD + L+
Sbjct: 625 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL 684
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
G V + +EDA+K+ L QP + + LI + E +D A+ E ++
Sbjct: 685 PGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGI 744
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + +I+ C +S A E+ ++
Sbjct: 745 CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKD 778
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 120/227 (52%), Gaps = 6/227 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++ + + LKP RY L++ K+G++ E +++L ++ +++P+ +++ +I
Sbjct: 317 DDMQIKGLKPNRYTYNSIILLLCKIGKSF---EAEKVLREMM-SQKIIPDNVVYTTLIHG 372
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPD 155
+ + + A + FDEM S + ++ TL+ GK+ +LF +++ + + PD
Sbjct: 373 FFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ + + +A+ + +EM++ + P +VT+G LI GLC +D A +L
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELL- 491
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D MR ++ + ++ S++ G+C G + A+ +EM I+ DA
Sbjct: 492 DEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDA 538
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 10/227 (4%)
Query: 37 NNTEA--QPLKPF-----RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
NN+E +K F +N Y++II L R E ++L Q+ + P+ +
Sbjct: 237 NNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST-PDVVS 295
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIM 148
+ VI Y L+ AL++ D+M ++ ++N+++ + GK + L ++M
Sbjct: 296 YSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMM 355
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ + PD Y L+HG + A K FDEML +++ P +T+ TLI G +V
Sbjct: 356 SQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVI 415
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E L +M+ +KPD + +LI C GE+ A EMV+
Sbjct: 416 EPQNLFHEMIS-RGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQ 461
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH + P + + +I + L+ A ++ DEM +Q V +N+++N +
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGIC 514
Query: 134 TCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G I++ L + ME + PDA +Y ++ ++ A K+ EML R LQPT+V
Sbjct: 515 KAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVV 574
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
TF L+ G C+ +++ +L M+ + PDA + +L+K C
Sbjct: 575 TFNVLMNGFCMLGMLEDGDRLLGWMLE-KGIVPDAITYNTLMKQHC 619
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 115/246 (46%), Gaps = 38/246 (15%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y+ ++ + +A ++ +++ +++ + P+ I + VI Y R ++
Sbjct: 497 KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEME-VAGIDPDAITYTTVIDAYCRLGDID 555
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRM-------------------- 141
A ++ EM +Q TV +FN L+N G + DR+
Sbjct: 556 KAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLM 615
Query: 142 ------------TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
T +++ M + V+PD+ +YNIL+ G +R L++AW ++ EM+++
Sbjct: 616 KQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV 675
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
PT+ ++ LI + ++ EA +L E+ MR + + D +++ + G++ + L
Sbjct: 676 PTVTSYNALIKRFYKKKKILEARELFEE-MRGHGLVADGEIYNFFVDMCYEEGDVEITLN 734
Query: 249 FKEEMV 254
+E +
Sbjct: 735 LCDEAI 740
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNI 161
L A ++ D++ S+ + TV S N L+ + + I+ +F E +S + SYNI
Sbjct: 206 LSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVF--CEYGISWNTTSYNI 263
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++++A ++ +M R P +V++ T+I G C + +ALKL +D M++
Sbjct: 264 IIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDD-MQIK 322
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KP+ + S+I LC +G+ A EM+ KI
Sbjct: 323 GLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKI 359
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + LI GLC G+L A EM ++ D
Sbjct: 280 PDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPD 316
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKEXKMDDANELFDEMLVKG-LVPNXVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++N L+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ M+
Sbjct: 321 TTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA + +I C G++ +EM R+
Sbjct: 381 V-GLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ + Y +I L + +L ++ + V P +++ +I + +L+ A
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVKLVNEA 244
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMH 164
+F EM S + V +++ L++ GK+ DLF I+E + PD ++NIL++
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN-IKPDVYTFNILVN 303
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++++ VFD M+K+ ++P VT+ +L+ G CL V++A + M + V
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG-GVN 362
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD Q ++ +I G C + + A+ +EM R I D
Sbjct: 363 PDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + K FDE + ++ H ++P+ + + ++I ++ + +ALQ+ D+M
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQM 426
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V + ++N++L+A+ ++D+ L + +K PD +Y+IL+ G S +L
Sbjct: 427 HDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKL 486
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA KVF+++L + + + +I G C+E +EAL L M PDA+ +
Sbjct: 487 EDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSK-MEDNGCIPDAKTYEI 545
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
+I L E +A EM+
Sbjct: 546 IILSLFKKDENDMAEKLLREMI 567
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 38/235 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II + + K+ +E + ++ + P+ + + +IS + L+ A+ +
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMV-SKGISPDVVTYSALISGFCILGKLKDAIDL 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
F++M N++ V +FN L+NA GK+ +F +M K
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342
Query: 152 ------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
V+PD SY+I+++G ++ ++A +F EM ++ + P +VT
Sbjct: 343 VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVT 402
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
+ +LI GL R+ AL+L D M V P+ + S++ LC ++ A+
Sbjct: 403 YSSLIDGLSKSGRISYALQL-VDQMHDRGVPPNICTYNSILDALCKTHQVDKAIA 456
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 7/223 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + N + Y T D+ + ++L P F ++ +++
Sbjct: 42 PYSSSKINFISYSSTSTTFHSNNDVDDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKH 100
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
L + +M ++ + + N L+N G I +F +I++ PD ++
Sbjct: 101 YHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTT 160
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L G + +++ A+ D+++ +++GTLI+GLC +V E + + RV
Sbjct: 161 LSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC---KVGETRAALDLLQRVD 217
Query: 222 N--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V+P+ ++ ++I +C V ++ A EMV I D
Sbjct: 218 GNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDV 260
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 143 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLIN 202
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 203 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLS-QSLL 261
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 262 PDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPD 298
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAM 249
Query: 143 DLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++++ ++ + + PD +YN L++G + L+ A + DEM + L+P T+ TLI G
Sbjct: 250 EIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGC 309
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
C E +D A K ++ M++ N++ D + +LI GLC G+
Sbjct: 310 CKEGDLDTAFKHRKRMIQE-NIRLDDVAYTALISGLCQEGQ 349
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ ++P + F +I + +
Sbjct: 187 ANGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LIPNGVTFTTLIDGHCKN 242
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 243 GRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTY 302
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A+K M++ ++ V + LI GLC E + +A K+ +M+
Sbjct: 303 TTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLS 362
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM RN
Sbjct: 363 V-GLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRN 398
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
N P P YN++ I + M +E ++ ++ D V P+ + + V+
Sbjct: 385 NRRGCPPSPVTYNVM-----IDASCKRGMLEEACDLIKKMIEDGHV-PDVVTYNTVMDGL 438
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID------RMTDLFQIMEKY 151
++ +E AL +F+EM +S NT++ + KID ++ + F+++++
Sbjct: 439 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRM 498
Query: 152 VS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
PD +Y+ L+ G R++DA + ++M+KR+ +PT+VT TLI+GLC R+
Sbjct: 499 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 558
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
EA ++ D M PD + +L+ G C G+ A +MV
Sbjct: 559 KEAREVL-DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 604
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 4/200 (2%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
R K+ DE ++L ++ D V P+ + + +IS ++ A + ++M + TV
Sbjct: 485 RGKL-DEAFRLLKRMTDDGHV-PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTV 542
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ NTL++ + G+I ++ M SPD +YN L+HG + + E A ++ +
Sbjct: 543 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD 602
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M+ R L P +VT+ L+ GLC R+ EA + M+ P+ + +LI G C+ G
Sbjct: 603 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ-MKSSGCAPNLFTYTALILGFCSAG 661
Query: 242 ELSLALGFKEEMVRNKIEMD 261
++ L EMV I D
Sbjct: 662 QVDGGLKLFGEMVCAGISPD 681
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 42 QPLKPFRYN-----LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
+ L+ +R N L+ ++++ D+ +++L + D P+E+ +C V+
Sbjct: 198 EALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMP-DEECAPDEVSYCTVLDG 256
Query: 97 YGRARLLEHALQVFDE------MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-E 149
+A +E A+++F + SS + +++ +N ++ + +ID +F+ M E
Sbjct: 257 LCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNE 316
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ VSPD+ SY IL+ G + +L DA +F ++L + P+ V + +LI+GLC+ D+
Sbjct: 317 RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 376
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
A +L DM R P + +I C G L A ++M+ +
Sbjct: 377 ARELFADMNR-RGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIED 422
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 3/202 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I L +A E +++L + + P+ + + ++ + RA E A ++ +M +
Sbjct: 548 LIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVTYNTLVHGHCRAGQTERARELLSDMVAR 606
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+ V ++ L++ + ++ +F Q+ +P+ +Y L+ G + +++
Sbjct: 607 GLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGG 666
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFASLI 234
K+F EM+ + P V +GTL LC R AL+ L+E + + +V+ +
Sbjct: 667 LKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAV 726
Query: 235 KGLCAVGELSLALGFKEEMVRN 256
GL G++ +ALGF +MVR
Sbjct: 727 DGLLEAGKMEMALGFVRDMVRG 748
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + + + V++++ Q+ D P+ F ++ +A ++ A V DEM
Sbjct: 47 YNVLIDSLSKRQETEAVKKMV-QVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEM 105
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
S + + + L + + G ++R FQ++E ++ +YNI++ + R++
Sbjct: 106 RSRMIPPYFATSSFLAHELCLRGSMERA---FQLLEIMPVANSSAYNIVVVALCKAARVD 162
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA ++ M ++R+ + +++ GL R+DEAL++ + R +P L
Sbjct: 163 DALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRENRR----EPCLVTLNVL 218
Query: 234 IKGLCAVGELSLA 246
++G C+ G++ A
Sbjct: 219 LEGFCSRGQVDKA 231
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 42/200 (21%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS 158
+A ++ AL++ MS + S +++L ++ G+ID +++ E P +
Sbjct: 157 KAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYR--ENRREPCLVT 214
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED-- 216
N+L+ G +++ A ++ M P V++ T++ GLC RV+EA++L D
Sbjct: 215 LNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRE 274
Query: 217 ------------MMRVY--------------------------NVKPDAQVFASLIKGLC 238
+R Y NV PD+ + LI GL
Sbjct: 275 LPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLA 334
Query: 239 AVGELSLALGFKEEMVRNKI 258
G+L+ A ++++ + +
Sbjct: 335 KAGKLNDARNLFQKLLHSGV 354
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
F +++ G+ +F +ME+ SP YN+L+ + E K+ M+
Sbjct: 13 FTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVD 72
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R P TF T++ GLC ++DEA +L D MR + P + L LC G +
Sbjct: 73 RGCFPDSFTFTTILCGLCKAGKMDEA-ELVMDEMRSRMIPPYFATSSFLAHELCLRGSME 131
Query: 245 LALGFKEEM 253
A E M
Sbjct: 132 RAFQLLEIM 140
>gi|242088695|ref|XP_002440180.1| hypothetical protein SORBIDRAFT_09g027340 [Sorghum bicolor]
gi|241945465|gb|EES18610.1| hypothetical protein SORBIDRAFT_09g027340 [Sorghum bicolor]
Length = 437
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 4/186 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ +L RA++F V +L L+ RV + F +I G + AL VF + +F
Sbjct: 63 VLYRLARARLFPLVPPLLTALR-TLRVPLQPTAFAALIDHLGAFSRPDAALLVFRAVPAF 121
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
+ +F+ LL++++ G++D D+ K V +A SYNI++ G A
Sbjct: 122 -CSHSNATFHALLHSLVCNGRVDAARDMLPEAPKLGVRTNAVSYNIILKGVCHRDGFSGA 180
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
V DEML R L+PT+VTF TL+ C E + A +L ++M R +V P+A +A L++
Sbjct: 181 RVVLDEMLARGLRPTVVTFNTLVGSACREGELAAAEQLMDEMAR-RSVPPNAVTYALLMQ 239
Query: 236 GLCAVG 241
GLC G
Sbjct: 240 GLCDAG 245
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 4/202 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R N + Y++I+ + F + +L + L R P + F ++ R L A
Sbjct: 158 RTNAVSYNIILKGVCHRDGFSGARVVLDEMLARGLR--PTVVTFNTLVGSACREGELAAA 215
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
Q+ DEM+ +V ++ L+ + G+ D L ME + PD +Y +LM
Sbjct: 216 EQLMDEMARRSVPPNAVTYALLMQGLCDAGRYDDAKKLLFDMEYRDCQPDVTNYGVLMSA 275
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
C + +M KR+L P ++ LI LC +VDEA + +M P
Sbjct: 276 CAACGDAGGIRGLISDMRKRKLTPDDASYNVLIKCLCDAGKVDEAHRALVEMQLKDGTVP 335
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
A + L+ G C + L L
Sbjct: 336 SAATYRVLLDGCCEARDFDLGL 357
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 6/193 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y L++ L A +D+ +++L +++ P+ + ++S +
Sbjct: 230 NAVTYALLMQGLCDAGRYDDAKKLLFDMEYRD-CQPDVTNYGVLMSACAACGDAGGIRGL 288
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
+M + S+N L+ + GK+D R Q+ + V P A +Y +L+ GC
Sbjct: 289 ISDMRKRKLTPDDASYNVLIKCLCDAGKVDEAHRALVEMQLKDGTV-PSAATYRVLLDGC 347
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R + +VF+ ML P +TF L+ GL + + +EA + E M + ++ D
Sbjct: 348 CEARDFDLGLRVFNAMLASGHCPLALTFRRLVRGLGEDGKAEEACFVLEQMGQ-RGMRLD 406
Query: 227 AQVFASLIKGLCA 239
AQ + S+ +C+
Sbjct: 407 AQGWQSVAACVCS 419
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 144 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 203
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + +DA ++FDEML + L P V F TLI G C RVD A+++ + M+ ++
Sbjct: 204 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 262
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPD 299
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + + A ++FDEM + F TL++ G++D
Sbjct: 189 SGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDL 248
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 308
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + + M++ N + D + +LI GLC G A EM+ ++
Sbjct: 309 GCCKEGDLDSAFEHXKRMIQE-NXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 367
Query: 260 MDA 262
DA
Sbjct: 368 PDA 370
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I + D+ ++ ++ +VP + F +I + +
Sbjct: 188 ASGVQPDVYT---YSVLINGXCKESKXDDANELFDEMLVKG-LVPNXVXFTTLIDGHCKN 243
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 244 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 303
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E R +A K+ +M+
Sbjct: 304 TTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLS 363
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 364 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 399
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 8/179 (4%)
Query: 60 KLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
K GR + E+ +Q+L Q + P+ I + +I + L+ A + DEMS +
Sbjct: 242 KNGRVDLAMEIYKQMLSQ-----SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGL 296
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ ++ TL++ G +D + + ++++ D Y L+ G R DA K
Sbjct: 297 KPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEK 356
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+ EML L+P T+ +I C + V + KL ++M R +V P + L+ G
Sbjct: 357 MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV-PSVVTYNVLMNG 414
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I T + M DE I +++K + P+ + F +I + ++ A+ F++M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQG-LSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V + FN+L+ + T K ++ + F+++ + + PD +N ++ ++
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++ D M + +P ++++ TLI G CL R+DEA K + M+ V +KPD + +
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSV-GLKPDEWTYNT 558
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
L+ G C G + A G EM+RN I
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGI 584
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 104/215 (48%), Gaps = 4/215 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEII-FCNVISFYGRARLLEHAL 107
+++ Y+ ++ K +E ++LH + R P ++ + VI+ + ++ A
Sbjct: 164 DVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAY 223
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+F EM +Q V ++ T+++ + +DR +FQ M +K V PD +YN L+HG
Sbjct: 224 NLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGY 283
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + ++ ++ +EM L+P T+G+L+ LC R EA + M+R +KP+
Sbjct: 284 LSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIR-KGIKPN 342
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G G LS MV N + D
Sbjct: 343 VAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 102/216 (47%), Gaps = 12/216 (5%)
Query: 49 YN-LLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
YN L+H L I K +M +E+ H LK D + N + GR R A
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLL---NYLCNNGRCR---EA 327
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
FD M ++ V + L++ T G + M DL +M E +SPD +NI+
Sbjct: 328 RFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+++A +F++M ++ L P +V FG LI LC RVD+A+ LK + M V P
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAV-LKFNQMMNEGVAP 446
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ VF SL+ GLC V + A F EM+ I D
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPD 482
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 102/202 (50%), Gaps = 6/202 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N + Q L P +++++ +I L + D+ +Q+ ++ V P +F +++
Sbjct: 402 NKMKQQGLSP---DVVNFGALIDALCKLGRVDDAVLKFNQMMNEG-VAPNIFVFNSLVYG 457
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD 155
E A + + EM + ++ V FNT+L + T G++ + L +ME+ + PD
Sbjct: 458 LCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPD 517
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
SY L+ G + R+++A K D ML L+P T+ TL++G C R+D+A +
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577
Query: 216 DMMRVYNVKPDAQVFASLIKGL 237
+M+R + P +++++ GL
Sbjct: 578 EMLR-NGITPGVVTYSTILHGL 598
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 47 FRYNLLHYDL-IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
F +N L Y L + K +AK F + + ++ D VV I CN+ + + ++++
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEF-YFEMLNQGIRPD--VVFFNTILCNLCT---KGQVMK- 501
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A ++ D M + V S+ TL+ G+ID +M + PD +YN L+H
Sbjct: 502 AQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
G + R++DA+ VF EML+ + P +VT+ T+++GL R EA +L +M+
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEM--SSFNVQRTVKSFNTLLNAMLTCGKID 139
+V P+ + +I + R LEH F + S + V V N LL + ++
Sbjct: 89 KVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIV--INQLLKGLCDAKRLR 146
Query: 140 RMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML---KRRLQPTLVTF 194
D+ ++ E +PD SYN L+ G +R E+A ++ M R P +V++
Sbjct: 147 EAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSY 206
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
T+I G E +VD+A L +MM ++P+ + ++I GLC + A G ++M+
Sbjct: 207 ATVINGFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMI 265
Query: 255 RNKIEMD 261
++ D
Sbjct: 266 DKGVKPD 272
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTD------LFQIMEK----Y 151
L+ AL++FD + + ++ +FN LL A+ G+ T+ LF M +
Sbjct: 30 LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89
Query: 152 VSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
V+PD C+Y+IL+ GC RLE + F +LK + + L+ GLC R+ EA
Sbjct: 90 VTPDLCTYSILI-GCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREA 148
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ + M PD + +L+KG C
Sbjct: 149 MDILIKRMPELGCTPDVVSYNTLLKGFC 176
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E + ++ Y RA ++ A VF EM + V +++T+L+ + T + +L
Sbjct: 551 PDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKEL 610
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ++ + YNI+++G + +++A+K+F + + Q + TF +I L
Sbjct: 611 YLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFK 670
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
R ++A+ L + Y + PD + C + E + G+ EE
Sbjct: 671 SGRNEDAMHLFA-TISSYGLVPDVFTY-------CLIAENLIEEGYLEE 711
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP + Y+ ++ RA D+ + ++ + + P + + ++ R
Sbjct: 549 LKPDEWT---YNTLLHGYCRAGRIDDAYGVFREMLRNG-ITPGVVTYSTILHGLFTTRRF 604
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
A +++ M + Q + +N +LN + +D LFQ + K + ++NI+
Sbjct: 605 SEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIM 664
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ S R EDA +F + L P + T+ + L E ++E L M +
Sbjct: 665 IGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS-G 723
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P++++ +L++ L G+++ A + ++ ++A
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEA 763
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
++ P + F ++I + L+ A+ + +EMS NV V +FN L++ + G++ +
Sbjct: 224 KIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKA 283
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
T + +M K V P+ +Y LM G + + + A VF+ + R + P + ++ +I G
Sbjct: 284 TSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING 343
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
LC VDEA+KL ++ M + N+ P+ ++SLI GLC G +S
Sbjct: 344 LCKNKMVDEAVKLFKE-MHLKNMTPNTVTYSSLIDGLCKSGRIS 386
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 85/165 (51%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + +++ Y + + A VF+ +S V V S++ ++N + +D
Sbjct: 295 VEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAV 354
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ M K ++P+ +Y+ L+ G S R+ D W + DE+ R ++T+ +L+ GL
Sbjct: 355 KLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGL 414
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C +VD+A+ L M+ ++PD + +L+ GLC G L A
Sbjct: 415 CKNHQVDKAIALLTK-MKDEGIQPDMSTYTTLVDGLCKNGRLKDA 458
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 3/138 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
S+ TL+N + G+ L + +E V PD Y ++ + + DA+ ++ E
Sbjct: 160 SYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSE 219
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M+ +++ P +VTF +LIYG C+ ++ EA+ L + M + NV P+ F LI GLC G
Sbjct: 220 MIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNE-MSLNNVNPNVYTFNILIDGLCKEG 278
Query: 242 ELSLALGFKEEMVRNKIE 259
E+ A M++ +E
Sbjct: 279 EVKKATSVLSVMIKQGVE 296
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + KM DE ++ ++ H + P + + ++I ++ + +
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVKLFKEM-HLKNMTPNTVTYSSLIDGLCKSGRISDVWDL 391
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DE+++ + ++N+LLN + ++D+ L M ++ + PD +Y L+ G
Sbjct: 392 IDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCK 451
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ RL+DA +++ ++L + + + +I GLC E DEAL L M PDA
Sbjct: 452 NGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQ-MEDNGCMPDAV 510
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI L + A+ EM+
Sbjct: 511 TYETLISALFKNNKNGKAVKLLREMI 536
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 40/224 (17%)
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
ILH H P F ++S + + A+ +M +Q + +FN L+N
Sbjct: 41 NHILHMNNH----TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILIN 96
Query: 131 AMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+++ + + +I++ PD + N L+ G ++ ++++A D ++++R
Sbjct: 97 CFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHL 156
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDM-------------------------------- 217
V++GTLI GLC AL+L +
Sbjct: 157 DQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDL 216
Query: 218 ---MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
M V + P+ F SLI G C VG+L A+G EM N +
Sbjct: 217 YSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNV 260
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P +N ++ V + A +M + +QP + TF LI +++ A
Sbjct: 50 TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFS 109
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++++ +PD +L++GLC G++ AL F + ++R + +D
Sbjct: 110 MVAKILKL-GYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLD 157
>gi|168040538|ref|XP_001772751.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675976|gb|EDQ62465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y ++ LG A+ FD + +L +K D RV P IF VI Y +A +E +L+ F
Sbjct: 2 YSTMLRLLGDARRFDYLWALLDDMKRDGHRVTP--TIFLGVIRSYVKANQIEDSLKTFHA 59
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M ++ + T +N++++ + T G + LF+ M +PD +Y +++ +
Sbjct: 60 MDKYDCKPTTLVYNSMIDILRTSGDYVQAEKLFRSMNPSSCAPDTITYTMMIDCMGKAGH 119
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A+ +F EM + + ++T+ +LI LC R+ EA L MR+ P+ +
Sbjct: 120 IQAAFDLFQEMHRMGYKANVITYSSLIRSLCKAGRISEACNLLSG-MRINGCNPNDVTYN 178
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
LI GL G+ L + +EM
Sbjct: 179 GLIVGLGGAGQADLVCSYYKEM 200
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P ++ +I G A + AL+ F+ M S + +++N ++N + GK+D
Sbjct: 379 APNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAHQ 438
Query: 144 LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
LF Q+ EK P+ +YNI++ V + R + K+ EM+ ++P
Sbjct: 439 LFEQMKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANHIEP 485
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 3/217 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
++ N++ Y +I L +A E +L ++ + P ++ + +I G A +
Sbjct: 135 YKANVITYSSLIRSLCKAGRISEACNLLSGMRING-CNPNDVTYNGLIVGLGGAGQADLV 193
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
+ EM SF + + + ++++++ GK+ LFQ K + D ++
Sbjct: 194 CSYYKEMKSFGLIPNLPTQAVVISSLVRIGKLSEAHSLFQTAALKSSTFDFDVMKSVVGS 253
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S R E +K F + K P+ LIY L V EAL + + R V P
Sbjct: 254 LCKSNRCEVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRG-GVSP 312
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +L L +L A+ + +++I DA
Sbjct: 313 DLMALNALTNSLVKEEKLEAAIDVVRFINKHRIGDDA 349
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 110/288 (38%), Gaps = 47/288 (16%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
PT ++SL+R+ K + A LF+ T A F ++++ ++ L ++
Sbjct: 210 PTQAVVISSLVRIGKLSE-AHSLFQ--------TAALKSSTFDFDVMKS--VVGSLCKSN 258
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
EV Q + VP +I + ++ AL V+ E + V + +
Sbjct: 259 RC-EVGFKFFQDAKKSGYVPSSGACSVLIYSLSKVGMVAEALCVYGESTRGGVSPDLMAL 317
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKY---------------------------------- 151
N L N+++ K++ D+ + + K+
Sbjct: 318 NALTNSLVKEEKLEAAIDVVRFINKHRIGDDAYAHERLVDLLCKTHRFEDVISQELPKQG 377
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+P+ YN L++ + R+ DA K F+ M P T+ +I L +VD A
Sbjct: 378 FAPNVHLYNKLIYQLGEAGRINDALKTFERMCSESCYPDTRTYNVVINLLGGVGKVDLAH 437
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+L E M+ KP+ Q + ++ L G L EMV N IE
Sbjct: 438 QLFEQ-MKEKGCKPNLQTYNIMVGHLVRAGRYQLGPKLCREMVANHIE 484
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + +DA ++FDEML + L P V F TLI G C RVD A+++ + M+ ++
Sbjct: 221 GXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLS 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPD 316
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + + A ++FDEM + F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + +SPD +YN L++G L+ A + DEM + L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + + M++ N + D + +LI GLC G A EM+ ++
Sbjct: 326 GCCKEGDLDXAFEHXKRMIQE-NXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I + D+ ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGXCKESKXDDANELFDEMLVKG-LVPNXVXFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ + V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 8/179 (4%)
Query: 60 KLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
K GR + E+ +Q+L Q + P+ I + +I + L+ A + DEMS +
Sbjct: 259 KNGRVDLAMEIYKQMLSQ-----SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGL 313
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
+ ++ TL++ G +D + + ++++ D Y L+ G R DA K
Sbjct: 314 KPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEK 373
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+ EML L+P T+ +I C + V + KL ++M R +V P + L+ G
Sbjct: 374 MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV-PSVVTYNVLMNG 431
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L +++ +E + +L ++ + P +++ N+I + R + A ++ EM
Sbjct: 295 YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGFMREGNADEAFKMIKEM 353
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ VQ +++ L+ + G++DR + L Q++ PD +YN+++ G
Sbjct: 354 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 413
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA+++ EM + P + T+ +I+GLC ++A L E+M +KP+A V+A
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAP 472
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
LI G C G +SLA ++M +
Sbjct: 473 LISGYCREGNVSLACEIFDKMTK 495
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
Y + R + A +V EM ++N L+ + G ++ + ME Y + PD
Sbjct: 232 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 291
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L++G SRR +A + DEM L+P +V + LI G E DEA K+ +
Sbjct: 292 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 351
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+M+ V+P+ + +L++GLC +G++ A ++MVR+
Sbjct: 352 EMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 392
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + L Q DT + P ++I+ +++ Y ++ +E F M V + + L
Sbjct: 554 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 613
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ + + G ++ + +EK S PD Y+ L+ G + E A+ + DEM K+ +
Sbjct: 614 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 673
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +V + LI GLC + A + ++ + P+ + SLI G C VG++S A
Sbjct: 674 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 732
Query: 248 GFKEEMVRNKIEMDA 262
EM+ I DA
Sbjct: 733 YLYNEMLATGITPDA 747
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L ++ ++ +L ++ + P ++ +IS Y R + A ++
Sbjct: 431 NVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLISGYCREGNVSLACEI 489
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FD+M+ NV + +N+L+ + G+++ T F Q+ E+ + P+ +Y+ L+HG +
Sbjct: 490 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF---------------------------------- 194
+ LE A ++ ML L+P V +
Sbjct: 550 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 609
Query: 195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G LI+ L ++ A ++ + + +V PD V++SLI GLC + A G +EM
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 668
Query: 254 VRNKIE 259
+ ++
Sbjct: 669 SKKGVD 674
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 68 DEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
D+++++ K D V+ + I+ +I + +E A +V + V +
Sbjct: 586 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 645
Query: 126 NTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++L++ + C DR L ++ +K V P+ YN L+ G S + A VF+ +
Sbjct: 646 SSLISGL--CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + L P VT+ +LI G C + A L +M+ + PDA V++ L G + G+
Sbjct: 704 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGD 762
Query: 243 LSLALGFKEEM 253
L A+ EEM
Sbjct: 763 LEQAMFLIEEM 773
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 39/227 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + + ++L ++ + V P+ ++ ++IS + E A + DEM
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 668
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------------------- 145
S V + +N L++ + G I ++F
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728
Query: 146 --------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+++ ++PDA Y++L GC + LE A + +EM R ++ +F L
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNL 787
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ G C ++ E LKL +M + P+A ++I GL G+LS
Sbjct: 788 VDGFCKRGKMQETLKLLHVIMG-RGLVPNALTIENIISGLSEAGKLS 833
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L R+ +E ++ D +VP+ + +I+ ++R A +
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKAL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEMS ++ V + L++ + G D + +++ V P+ +Y+ L+ G
Sbjct: 315 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCK 374
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A + +M++ +P +T+ +I G +A +L +M + P+
Sbjct: 375 MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVY 433
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +I GLC GE A EEM ++ +A
Sbjct: 434 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 467
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + YD ++ L + D +L Q+ D+ P+ I + +I + R + A ++
Sbjct: 361 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR-PDTITYNLIIEGHFRHHSKKDAFRL 419
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
EM + + V +++ +++ + G+ ++ +DL + M
Sbjct: 420 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 479
Query: 149 EKYVS---------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
E VS PD YN L+ G R+E++ K F +M +R L P T
Sbjct: 480 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 539
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ LI+G ++ A +L + M+ +KP+ ++ L++
Sbjct: 540 YSGLIHGYLKNGDLESAEQLVQRMLDT-GLKPNDVIYIDLLE 580
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
T + P+ ++ + + A LE A+ + +EM ++ SFN L++ GK+
Sbjct: 741 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCKRGKMQE 799
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L IM + + P+A + ++ G + +L + +F E+ ++ + F +L
Sbjct: 800 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFM 859
Query: 200 GL------------------CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ C E +D+AL L+ D++ + + +++ LC G
Sbjct: 860 DMINQGKIPLDVVDDMIRDHCKEGNLDKALMLR-DVIVAKSAPMGCSSYLAIVDNLCRKG 918
Query: 242 ELSLALGFKEEM 253
+LS AL +EM
Sbjct: 919 KLSEALNLLKEM 930
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 104/200 (52%), Gaps = 2/200 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+++I A F + + +K + RV P+ + +IS + E A ++
Sbjct: 44 SLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKL 103
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
EM N+ V ++++++ +++ K + + + +M +PD ++N +M G
Sbjct: 104 LSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFAR 163
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDA 227
S +E A +V+ M++ +P V++ LI+GL ++DE+LK+ +M MR P+
Sbjct: 164 SNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNV 223
Query: 228 QVFASLIKGLCAVGELSLAL 247
F++LI GLC GEL AL
Sbjct: 224 ITFSTLIHGLCRTGELEKAL 243
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 111/222 (50%), Gaps = 8/222 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++P R+ Y+ +I+ L + + +++L +++ D + + ++I +
Sbjct: 77 VEPDRWT---YNTLISGLCSSGNTEGARKLLSEMR-DKNIAANVFTYSSIIKSLVKEAKP 132
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E + +V +EM + V +FN ++ +++ +++Q M E PD SY+IL
Sbjct: 133 EESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHIL 192
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+HG +L+++ K+ EM R P ++TF TLI+GLC +++AL++ M+
Sbjct: 193 IHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA 252
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
KP+ + +LI GLC ++ A E+M + I DA
Sbjct: 253 -GCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDA 293
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EK 150
V+ +A +L AL+VF+ M S + ++ ++N L+N+ G+ + DLFQ M EK
Sbjct: 16 VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREK 75
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
V PD +YN L+ G S E A K+ EM + + + T+ ++I L E + +E+
Sbjct: 76 RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEES 135
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K+ E+MM PD F +++G + A + MV + + D
Sbjct: 136 YKVLEEMMAA-GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 4/218 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEH 105
++ + + Y ++I L + DE +IL ++ VP I F +I R LE
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEK 241
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
AL+VF M + ++ TL+ + K+ + +LF+ M + + PDA +YN L+
Sbjct: 242 ALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 301
Query: 165 GCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +++A K++ EM LQPT+VTF TLI G C ++ A +L + M +
Sbjct: 302 GYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAE-MGTKGL 360
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + LI GL +L AL ++M K +D
Sbjct: 361 AADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 398
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 104/201 (51%), Gaps = 7/201 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
KP +Y Y +I L RA+ + +++ ++ + P+ + + ++I+ Y + ++
Sbjct: 255 KPNKYT---YTTLIAGLCRAEKVIQARELFEKMTQAC-IPPDAVAYNSLIAGYCKRGSMD 310
Query: 105 HALQVFDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +++ EMS +Q T+ +FNTL++ GK+ R +L M K ++ D C+Y IL
Sbjct: 311 EAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRIL 370
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + +L++A +V+ +M +++ V+ + + GLC +D+A + E R
Sbjct: 371 IAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFE-ATRKSG 429
Query: 223 VKPDAQVFASLIKGLCAVGEL 243
P+ + F L + L +G +
Sbjct: 430 AVPNPETFRILSESLIKLGRV 450
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+ ++ + L A +VF+ M P+LVT+ LI C +AL L + M
Sbjct: 12 AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R V+PD + +LI GLC+ G A EM
Sbjct: 72 KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEM 107
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + + ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDXDMWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P ++N+++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVE-MKGKNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +LIKG +V ++ AL EEM
Sbjct: 219 NVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDXDMWVLMIDSYGKAGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNVMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + +SPD +YN +++G +++E+A K F EM + ++P +VT+ TLI G
Sbjct: 171 RFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +KP+A +++L+ GLC ++S A +EM+ I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYI 286
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+E A + F++M S + V ++NT++N K++ F M+ K + P+ +Y
Sbjct: 166 VETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTT 225
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G V +++DA ++ +EM ++P +T+ TL+ GLC ++ EA + ++M+ Y
Sbjct: 226 LIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKY 285
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +F LI C G L A + M+R + +A
Sbjct: 286 IAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRLSVPTEA 326
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ V ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPNVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ Y + P+A +Y+ L+ G + ++ +A + EML + + PT + F LI
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMLDKYIAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDI 357
>gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa]
gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 48/284 (16%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
LLR + D K AL +F+ P +++ YD+++ LG+ K D+++++L
Sbjct: 47 LLRFKDDWKSALGVFRWAGLRPG---------YKHRPEAYDMMVDILGKMKQMDQMRELL 97
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
++ + V + + + A E A+++FDE+ +F +++ +S N LL+ +
Sbjct: 98 EEMNRNHLVTLNTV--GKAMRRFSGAGKWEDAVRMFDELGTFGLEKNAESMNLLLDTLCK 155
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHG------------------------CVVS- 169
GK+++ +F ++ ++ P+A ++NI +HG CV+S
Sbjct: 156 EGKVEQARAIFLELKSHILPNAHTFNIFIHGWCKANLVDEAHWTLQEMKGHAFRPCVISY 215
Query: 170 ----------RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ DEM + P +VT+ T+I L +EAL+L + M+
Sbjct: 216 STIILFYCRQHNFSKVYELLDEMEAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQ-RMK 274
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALG-FKEEMVRNKIEMDA 262
KPD F SLI L G A+ F++EM + D
Sbjct: 275 SAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDT 318
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 90/205 (43%), Gaps = 5/205 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
+++ I +A + DE L ++K H R P I + +I FY R ++ DE
Sbjct: 180 FNIFIHGWCKANLVDEAHWTLQEMKGHAFR--PCVISYSTIILFYCRQHNFSKVYELLDE 237
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M + V ++ T++ + + L Q M+ PD +N L++ + R
Sbjct: 238 MEAQGCPPNVVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGR 297
Query: 172 LEDAWKVFD-EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
++A VF+ EM + T+ ++I LC V +AL L +M K D Q F
Sbjct: 298 FQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFKLDGQTF 357
Query: 231 ASLIKGLCAVGELSLALGFKEEMVR 255
L+K G+++L ++MV+
Sbjct: 358 YPLLKSCLRTGDMNLLSQLLDDMVK 382
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR ++ Y II R F +V ++L +++ P + + +I F +++ E A
Sbjct: 208 FRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQG-CPPNVVTYTTIIVFLAKSQNTEEA 266
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYN---- 160
LQ+ M S + FN+L+ + G+ D+F+ + VS D +YN
Sbjct: 267 LQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIA 326
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL------VTFGTLIYGLCLELRVDEALKLK 214
+L H VS+ L L R ++ + TF L+ ++ +L
Sbjct: 327 MLCHHGHVSKALS---------LLREMETSAPFKLDGQTFYPLLKSCLRTGDMNLLSQLL 377
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+DM++ + + D +A LI GLC + A EEM+ I
Sbjct: 378 DDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMISKDI 421
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 44/219 (20%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EAQ P N++ Y II L +++ +E Q+ ++K P+ F ++I GR
Sbjct: 239 EAQGCPP---NVVTYTTIIVFLAKSQNTEEALQLTQRMK-SAGCKPDTPFFNSLIYILGR 294
Query: 100 ARLLEHALQVFD-EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--------- 149
A + A+ VF+ EM + V R ++N+++ + G + + L + ME
Sbjct: 295 AGRFQEAVDVFEKEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFKLDG 354
Query: 150 -----------------------------KYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+S D +Y +L+HG + + + A+ +F+
Sbjct: 355 QTFYPLLKSCLRTGDMNLLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFE 414
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
EM+ + + P T L+ + L+ D A K+ ED M+
Sbjct: 415 EMISKDIVPKYQTCHMLLEEVKLKSMYDTAEKI-EDFMK 452
>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 15/234 (6%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
SP R+ L+ Q DP LA ++F P+ FR + ++I KLGR+K F
Sbjct: 72 SPCRVQKLIASQSDPLLAKEIFDYACRQPH---------FRPSSSSLLVLILKLGRSKYF 122
Query: 68 DEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ +L K +R P F +I YG A L + AL+VF M F + K N
Sbjct: 123 SLIDDLLLSFK--SRRYPVTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLN 180
Query: 127 TLLNAMLTCGKIDRMT-DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+L +++ R DLF+ + V P+ SYNIL+ + + A+ +F++M +
Sbjct: 181 RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R + P + T+ TL+ GLC + +V+ A+ L EDM+ + PD +A+L+ LC
Sbjct: 241 RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYI-PDTLSYATLLNSLC 293
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMH 164
A +F++M NV V+++ TL+ + +++ DL + ++ K PD SY L++
Sbjct: 231 AYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLN 290
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++L +A+K+ M + P + + T+I G C E R +A K+ ED M+
Sbjct: 291 SLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILED-MQSNGCL 349
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + SL GLC G LA G+ EEM
Sbjct: 350 PNLVSYESLTNGLCDQGMFELAKGYVEEMT 379
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 37/216 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V+P+ + ++ R + A+ + ++M + S+ TLLN++ K+
Sbjct: 243 VIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAY 302
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ K +PD YN ++ G R DA K+ ++M P LV++ +L GL
Sbjct: 303 KLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGL 362
Query: 202 C----LEL-------------------------------RVDEALKLKEDMMRVYNVKPD 226
C EL R+ E+ + EDM++ P
Sbjct: 363 CDQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLK-RGKAPH 421
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + +I G+C V + + E++++ + D
Sbjct: 422 SDTWEIIISGICEVEDTAKFCEVWEKILKKDVRRDT 457
>gi|115475155|ref|NP_001061174.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|40253652|dbj|BAD05595.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623143|dbj|BAF23088.1| Os08g0191900 [Oryza sativa Japonica Group]
gi|125602452|gb|EAZ41777.1| hypothetical protein OsJ_26318 [Oryza sativa Japonica Group]
gi|215695295|dbj|BAG90486.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704436|dbj|BAG93870.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 609
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV I Q++ T + P+ + + +I YG+AR E AL VF+EM V+ T KS+N
Sbjct: 298 YKEVSSIYDQMQR-TALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 356
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++A G ++ +F+ M ++ V PD CSY ++ V + ++ A K F + +
Sbjct: 357 ILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKED 416
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
L+P +V +GTL+ G V+ +++ E MR+ V+P+ ++ +++
Sbjct: 417 GLKPNVVVYGTLMKGYSKLNNVERVMRVYE-RMRMQGVEPNQTIYTTIM 464
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 5/198 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ + E + I L ++ R P++ +F +I Y +A A ++F
Sbjct: 215 YQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFA 274
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+MS + + +FN+L++ ++ + D Q+ + PD SY++L+ +RR
Sbjct: 275 QMSERGIPLSTVTFNSLMSFETNYKEVSSIYD--QMQRTALKPDVVSYSLLIKAYGKARR 332
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT ++ LI + V+EA + + MR + V+PD +
Sbjct: 333 EEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFK-AMRRHRVEPDLCSYT 391
Query: 232 SLIKGLCAVGELSLALGF 249
+++ ++ A F
Sbjct: 392 TMVLAYVNASDMDGAEKF 409
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + +++T G+ F +++L + + P I ++ YGRA+ A
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYM-NKKGYKPSVISQTALMEAYGRAKQYRKA 196
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVS--PDACSYNIL 162
VF M + + + ++ +L + + K +F+ + EK S PD ++++
Sbjct: 197 EAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMM 256
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + A K+F +M +R + + VTF +L + E E + + M R
Sbjct: 257 IYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL---MSFETNYKEVSSIYDQMQRT-A 312
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KPD ++ LIK AL EEM+
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEML 344
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 122/238 (51%), Gaps = 13/238 (5%)
Query: 28 LFKNPNPNP-----NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDT 81
LFK+ NP+ N E+ + P ++ Y+ +I+ L ++ ++ +++L ++ +
Sbjct: 107 LFKDGNPDQAVKLFENMESSRVNP---DIFTYNTVISGLCKSGNLEKARELLEEMIRRGG 163
Query: 82 RVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ P+ + + +I + + +E AL++ D M V ++N++++A+ G++
Sbjct: 164 KSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVE 223
Query: 141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
++ + M SPD ++N L+ G + L A +V +EM + + P ++T+ L+ G
Sbjct: 224 AAEILKTMS--CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNG 281
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC +V A L E+++R + PD + SL+ GLC GE+ A +EM +I
Sbjct: 282 LCRVGQVQVAFYLLEEIVRQGYI-PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREI 338
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +++ L R +VQ + L+ R +P+ I + +++ ++ +E A
Sbjct: 271 DVITYTILVNGLCRVG---QVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAH 327
Query: 108 QVFDEMS---------SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDA 156
++ EMS S N+ + ++N +L ++ G I + L + YV PD
Sbjct: 328 KLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV-PDV 386
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G + R+ +A + DEM P VT G++++GLC RVD+A L +
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 446
Query: 217 MMRVYNVKPDAQVFASLIKGLC 238
M R + P+ V+ SLI GLC
Sbjct: 447 MSRKRHA-PNVVVYTSLIDGLC 467
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 45/278 (16%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
+R P LA+Q F A +++++ Y+ ++ L ++ ++
Sbjct: 1 MRRSSRPDLAIQFFD---------WAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYK 51
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
L H + P + F +I +A AL+ + F+V V FN L++ +
Sbjct: 52 DLLH-SGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKD 110
Query: 136 GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLV 192
G D+ LF+ ME V+PD +YN ++ G S LE A ++ +EM++R + P +V
Sbjct: 111 GNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIV 170
Query: 193 TFGTLI-YGLCLELRVDEALKLKEDM-------------------------------MRV 220
T+ TLI G+C + V+EAL++ + M ++
Sbjct: 171 TYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKT 230
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ PD F +L+ G C G L AL EEM R I
Sbjct: 231 MSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 268
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D SYN L+ V S KV+ ++L P LVTF LI G C + AL+
Sbjct: 26 DVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFL 85
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++V PD +F LI GL G A+ E M +++ D
Sbjct: 86 R-ALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPD 131
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +I+ +I + +E A +F EM + +++ L+N + G + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEM 255
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M E V P+ +YN +M+ R +DA++VFDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E++++EA K+ D M+ + P+ + +LI G C VG+L AL
Sbjct: 316 EMKLNEANKVV-DQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L R +E +++ Q+K D + P I + +I + L AL +
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
++ S + ++ ++N L++ G + + ME+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 152 ------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ PD +Y++L+HG + ++ +A ++F M+++ +P V
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I G C E ALKL ++M + P+ + +I+ LC + A E+M
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEE-KELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539
Query: 254 VRNKIE 259
+ + I+
Sbjct: 540 IDSGID 545
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDA 156
GR + A QVFDEM V + ++NTL+ + K++ + Q+ ++P+
Sbjct: 282 GRTK---DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G +L A + ++ R L P+LVT+ L+ G C + A K+ ++
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 217 M----------------------------------MRVYNVKPDAQVFASLIKGLCAVGE 242
M M + PD ++ LI G C G+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 243 LSLALGFKEEMVRNKIE 259
++ A + MV E
Sbjct: 459 MNEASRLFKSMVEKNCE 475
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+I+ Y +++ L ++ F+EM FN LL ++ ++ F + V
Sbjct: 100 IINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKV 159
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
D S+ IL+ GC + +E ++ + E+ + P +V + TLI G C + +++A
Sbjct: 160 VLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGL 237
L +M ++ + + + + LI GL
Sbjct: 220 LFFEMGKL-GLVANERTYTVLINGL 243
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 36/213 (16%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + + A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 184
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M V PD +Y++L++G +++ A ++FDEML + L P VTF TLI G C
Sbjct: 185 LKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHC 244
Query: 203 LELRVDEALKLKEDM----------------------------------MRVYNVKPDAQ 228
RVD A+++ + M MR+ +KPD
Sbjct: 245 KNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKI 304
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C G+L A ++ M++ I +D
Sbjct: 305 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLD 337
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D ++ ++ D +VP + F +I + +
Sbjct: 190 HASGVEPDVYT---YSVLINGLCKESKIDGANELFDEML-DKGLVPNGVTFTTLIDGHCK 245
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + +L M K + PD +
Sbjct: 246 NGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKIT 305
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC LE A++ M++ ++ V + TLI GLC E R +A K+ +M+
Sbjct: 306 YTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREML 365
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 366 SV-GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 402
>gi|302806226|ref|XP_002984863.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
gi|300147449|gb|EFJ14113.1| hypothetical protein SELMODRAFT_121207 [Selaginella moellendorffii]
Length = 564
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 120/255 (47%), Gaps = 12/255 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+ +++ +L+ QK+ +A F A+ F++++ Y I+ LGRAK F
Sbjct: 33 NAYQVNEILKQQKEAGVAYNFF---------IWARKQAGFKHDVHTYTTILGILGRAKSF 83
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D + +L ++ + P + + +I YGRA L+ +L++F+ M + ++ T
Sbjct: 84 DVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCT 142
Query: 128 LLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L++ G D DL+ Q+ PD +Y+I++H + +L A+K+F EM R
Sbjct: 143 LIDLQAKAGFHDAAMDLYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRG 202
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P+LVT+ +I + D ALKL D+ V PD + +++ L G + A
Sbjct: 203 YAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEV-GYAPDRVTYGIIMEVLGNCGHIEDA 261
Query: 247 LGFKEEMVRNKIEMD 261
EEM R D
Sbjct: 262 EQVFEEMERAGWVAD 276
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L +++ +E + +L ++ + P +++ N+I + R + A ++ EM
Sbjct: 317 YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGFMREGNADEAFKMIKEM 375
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ VQ +++ L+ + G++DR + L Q++ PD +YN+++ G
Sbjct: 376 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 435
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA+++ EM + P + T+ +I+GLC ++A L E+M +KP+A V+A
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAP 494
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
LI G C G +SLA ++M +
Sbjct: 495 LISGYCREGNVSLACEIFDKMTK 517
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + +I Y + R + A +V EM ++N L+ + G ++
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ ME Y + PD +Y L++G SRR +A + DEM L+P +V + LI G
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E DEA K+ ++M+ V+P+ + +L++GLC +G++ A ++MVR+
Sbjct: 360 MREGNADEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + L Q DT + P ++I+ +++ Y ++ +E F M V + + L
Sbjct: 576 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 635
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ + + G ++ + +EK S PD Y+ L+ G + E A+ + DEM K+ +
Sbjct: 636 IHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 695
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +V + LI GLC + A + ++ + P+ + SLI G C VG++S A
Sbjct: 696 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 754
Query: 248 GFKEEMVRNKIEMDA 262
EM+ I DA
Sbjct: 755 YLYNEMLATGITPDA 769
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L ++ ++ +L ++ + P ++ +IS Y R + A ++
Sbjct: 453 NVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG-LKPNAFVYAPLISGYCREGNVSLACEI 511
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FD+M+ NV + +N+L+ + G+++ T F Q+ E+ + P+ +Y+ L+HG +
Sbjct: 512 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 571
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF---------------------------------- 194
+ LE A ++ ML L+P V +
Sbjct: 572 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 631
Query: 195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G LI+ L ++ A ++ + + +V PD V++SLI GLC + A G +EM
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 690
Query: 254 VRNKIE 259
+ ++
Sbjct: 691 SKKGVD 696
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 68 DEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
D+++++ K D V+ + I+ +I + +E A +V + V +
Sbjct: 608 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVY 667
Query: 126 NTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++L++ + C DR L ++ +K V P+ YN L+ G S + A VF+ +
Sbjct: 668 SSLISGL--CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + L P VT+ +LI G C + A L +M+ + PDA V++ L G + G+
Sbjct: 726 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGD 784
Query: 243 LSLALGFKEEM 253
L A+ EEM
Sbjct: 785 LEQAMFLIEEM 795
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 39/227 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + + ++L ++ + V P+ ++ ++IS + E A + DEM
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 690
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------------------- 145
S V + +N L++ + G I ++F
Sbjct: 691 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 750
Query: 146 --------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+++ ++PDA Y++L GC + LE A + +EM R ++ +F L
Sbjct: 751 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNL 809
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ G C ++ E LKL +M + P+A ++I GL G+LS
Sbjct: 810 VDGFCKRGKMQETLKLLHVIMG-RGLVPNALTIENIISGLSEAGKLS 855
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L R+ +E ++ D +VP+ + +I+ ++R A +
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKAL 336
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEMS ++ V + L++ + G D + +++ V P+ +Y+ L+ G
Sbjct: 337 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCK 396
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A + +M++ +P +T+ +I G +A +L +M + P+
Sbjct: 397 MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENA-GISPNVY 455
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +I GLC GE A EEM ++ +A
Sbjct: 456 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 489
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + YD ++ L + D +L Q+ D+ P+ I + +I + R + A ++
Sbjct: 383 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR-PDTITYNLIIEGHFRHHSKKDAFRL 441
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--------------------- 148
EM + + V +++ +++ + G+ ++ +DL + M
Sbjct: 442 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 501
Query: 149 EKYVS---------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
E VS PD YN L+ G R+E++ K F +M +R L P T
Sbjct: 502 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFT 561
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ LI+G ++ A +L + M+ +KP+ ++ L++
Sbjct: 562 YSGLIHGYLKNGDLESAEQLVQRMLDT-GLKPNDVIYIDLLE 602
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
T + P+ ++ + + A LE A+ + +EM ++ SFN L++ GK+
Sbjct: 763 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCKRGKMQE 821
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L IM + + P+A + ++ G + +L + +F E+ ++ + F +L
Sbjct: 822 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFM 881
Query: 200 GL------------------CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ C E +D+AL L+ D++ + + +++ LC G
Sbjct: 882 DMINQGKIPLDVVDDMIRDHCKEGNLDKALMLR-DVIVAKSAPMGCSSYLAIVDNLCRKG 940
Query: 242 ELSLALGFKEEMVRNKI 258
+LS AL +EM + I
Sbjct: 941 KLSEALNLLKEMDKRGI 957
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWK 177
R+ + L++ G++ ++ +M ++ ++P N L+ + + + WK
Sbjct: 171 HRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWK 230
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
V + M+ + P + T+ TLI C D A K+ + MR + + LI GL
Sbjct: 231 VREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVE-MRERGCGLNTVTYNVLIAGL 289
Query: 238 CAVGELSLALGFKEEM 253
C G + A GFK++M
Sbjct: 290 CRSGAVEEAFGFKKDM 305
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ Y II L +A+ D + +L + D V P+ + + +I +A+ ++
Sbjct: 228 KGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMI-DKGVKPDVVTYNTIIDGLCKAQAVD 286
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A V M V+ V ++NT+++ + +DR + Q +++K V PD +YN L+
Sbjct: 287 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLI 346
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + + ++ + +EM R L P +VT+ L+ LC + EA K+ M+R +
Sbjct: 347 HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIR-KGI 405
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
KP+ ++ L+ G A G ++ + MV N I
Sbjct: 406 KPNVTIYGILLHGYAARGAIADLTDLLDLMVANGIS 441
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 107/215 (49%), Gaps = 4/215 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RVVPEEIIFCNVISFYGRARLLEHAL 107
N++ + ++ L K +E ++LH + D P + + +I +A+ ++ A
Sbjct: 160 NVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAE 219
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
V M V+ V +++T+++ + +DR + Q +++K V PD +YN ++ G
Sbjct: 220 GVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 279
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++ ++ A V M+ + ++P +VT+ T+I GLC VD A + + M+ +VKPD
Sbjct: 280 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMID-KDVKPD 338
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Q + LI G + GE + EEM ++ D
Sbjct: 339 IQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPD 373
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I L + D+ +Q+ +D V P ++F +++ E A ++
Sbjct: 478 DVVTYGILIDALCKLGRVDDAVLKFNQMINDG-VTPNSVVFNSLVYGLCTVDRWEKAEEL 536
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM V+ V FNT++ + G++ L ME+ V P+ SYN L+ G +
Sbjct: 537 FFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCL 596
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R ++A ++ D M+ L+P L+++ TL+ G C R+D A L +M+R V P A
Sbjct: 597 AGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLR-KGVTPGAV 655
Query: 229 VFASLIKGL 237
++++++GL
Sbjct: 656 TYSTILQGL 664
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R N++ ++ I+ L Q+++ ++ V P I + +I + A +
Sbjct: 543 QGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMER-VGVRPNVISYNTLIGGHCLAGRTD 601
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A Q+ D M S ++ + S++TLL G+ID LF +++ K V+P A +Y+ ++
Sbjct: 602 EAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTIL 661
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +RR +A +++ M+K Q + T+ ++ GLC VDEA K+ + + ++
Sbjct: 662 QGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCS-KDL 720
Query: 224 KPDAQVFASLI 234
+P+ F +I
Sbjct: 721 RPNIITFTIMI 731
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 6/216 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ L P +++ Y L++ L + E ++I + + + P I+ ++ Y
Sbjct: 367 ARGLDP---DVVTYSLLLDYLCKNGKCTEARKIFYCMIRKG-IKPNVTIYGILLHGYAAR 422
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
+ + D M + + FN +L A ID +F M ++ +SPD +Y
Sbjct: 423 GAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTY 482
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL+ R++DA F++M+ + P V F +L+YGLC R ++A +L +M
Sbjct: 483 GILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWD 542
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
V+P+ F +++ LC G++ +A + M R
Sbjct: 543 -QGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMER 577
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 9/144 (6%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLN--AMLTCGKIDRMT-DLFQIMEKYVS----PD 155
++ AL++FDE+ +V++FN LLN A C + LF M + S PD
Sbjct: 30 IDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPD 89
Query: 156 ACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
C+Y+IL GC R+E + F +LK + V L+ GLC RVDEA+ +
Sbjct: 90 LCTYSILT-GCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDIL 148
Query: 215 EDMMRVYNVKPDAQVFASLIKGLC 238
M + P+ +L+KGLC
Sbjct: 149 LRRMPEFGCMPNVVSCNTLLKGLC 172
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 6/207 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP +L+ YD ++ + D + ++ V P + + ++ R
Sbjct: 615 LKP---DLISYDTLLRGYCKTGRIDNAYCLFREMLRKG-VTPGAVTYSTILQGLFHTRRF 670
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
A +++ M Q + ++N +LN + +D +FQ + K + P+ ++ I+
Sbjct: 671 SEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIM 730
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ R +DA +F + L P +VT+ ++ + E +DE L M +
Sbjct: 731 IDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEK-SG 789
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGF 249
PD+ + ++I+ L GE+ A +
Sbjct: 790 CTPDSVMLNAIIRSLLGRGEIMRAGAY 816
>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K ++ + Y+ II+ L ++KM DE + +QL + P + ++ + +E
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEG-FSPTPCTYGPLLDGLLKDGNIE 888
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +FDEM + +N LLN G +++ +LF+ M E+ ++PD SY +++
Sbjct: 889 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVI 948
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
RL D F ++ L+P L+T+ LI+GL R++EAL L DM + +
Sbjct: 949 DTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEK-KGI 1007
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + SLI L G+ + A EE++
Sbjct: 1008 APNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + D +++ ++K P+E + ++ G++ +E L++ +EM
Sbjct: 769 YNALICGLVDEDLIDIAEELFSEMKR-LGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + T ++NT+++ ++ +D +L+ Q+M + SP C+Y L+ G + +
Sbjct: 828 HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 887
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA +FDEML+ +P + L+ G + ++ +L E M+ + PD + +
Sbjct: 888 EDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVE-QGMNPDIKSYTV 946
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I LCA G L+ L + +++ +E D
Sbjct: 947 VIDTLCADGRLNDGLSYFKQLTDMGLEPD 975
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 111/217 (51%), Gaps = 11/217 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L + +I L +A +E +I ++LK + + P + + +++ GR ++ +Q+
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELK-EMNLEPTDCTYNTLLAGLGREGKVKEVMQL 578
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+ M+S + + ++NT+L+ + G+++ D L+ + PD SYN +M+G V
Sbjct: 579 LEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL++A+ +F +M K+ L P T T++ + EAL +R Y ++PD++
Sbjct: 639 EDRLDEAFWMFCQM-KKVLAPDYATVCTILPSFVRSGLMKEALH----TVREYILQPDSK 693
Query: 229 V----FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V SL++G+ ++ F E + + + +D
Sbjct: 694 VDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLD 730
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
++L +VP+ ++ N + YG A+ L A +VF E+ + + ++ ++
Sbjct: 439 YELMKSKGIVPD-VVAGNAV-LYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCC 496
Query: 133 LTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
D +F +++E +PD + N L+ + R +AWK+F E+ + L+PT
Sbjct: 497 SKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTD 556
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
T+ TL+ GL E +V E ++L E M + P+ + +++ LC GE++ AL
Sbjct: 557 CTYNTLLAGLGREGKVKEVMQLLEG-MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615
Query: 252 EMVRN 256
M N
Sbjct: 616 SMTMN 620
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A ++ + + V S+N L+ ++ ID +LF M++ PD +Y++++
Sbjct: 750 AHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILD 809
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
S R+ED K+ +EM + + T VT+ T+I GL +DEA+ L +M
Sbjct: 810 AMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS-EGFS 868
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
P + L+ GL G + A +EM+ E
Sbjct: 869 PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 8/216 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L + YN L Y L+ + R E + + D VVP + ++ +G+ R
Sbjct: 169 LNAYTYNGLIYFLVKSGFDR-----EAMDVYKAMAADG-VVPTVRTYSVLMLAFGKRRDA 222
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E + + EM + V+ V S+ + + G+++ + + M E+ PD + +L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + RL DA VF +M +P VT+ TL+ C + ++ + ++
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLL-DKCGDSGDSRSVSEIWNALKADG 341
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + + + LC VG + AL +EM + I
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGI 377
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 18/229 (7%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A KP R + Y ++ K G + V +I + LK D NV+S+
Sbjct: 303 KASDQKPDR---VTYITLLDKCGDSGDSRSVSEIWNALKADGYND-------NVVSYTAA 352
Query: 100 ARLL------EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV- 152
L + AL VFDEM + S+N+L++ L + +R +LF M +
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P+ ++ + ++ S A K ++ M + + P +V ++YGL R+ A +
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + ++ + PD + +IK A+ EM+ N+ D
Sbjct: 473 VFHE-LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L ++ QL D + P+ I + +I G++ LE AL ++++M
Sbjct: 944 YTVVIDTLCADGRLNDGLSYFKQLT-DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + ++N+L+ + GK ++ +++ K P+ +YN L+ G VS
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSP 1062
Query: 173 EDAWKVFDEMLKRRLQPTLVTF 194
E+A+ + M+ +P T+
Sbjct: 1063 ENAFAAYGRMIVGGCRPNSSTY 1084
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ +V + +I F ++ A+ V+ M++ V TV++++ L+ A +
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223
Query: 140 RMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ L ME + V P+ SY I + + RLE+A+++ +M + +P +VT LI
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
LC R+ +A + M+ + KPD + +L+
Sbjct: 284 QILCDAGRLADAKDVFWK-MKASDQKPDRVTYITLL 318
>gi|125560423|gb|EAZ05871.1| hypothetical protein OsI_28108 [Oryza sativa Indica Group]
Length = 608
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV I Q++ T + P+ + + +I YG+AR E AL VF+EM V+ T KS+N
Sbjct: 298 YKEVSNIYDQMQR-TALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 356
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++A G ++ +F+ M ++ V PD CSY ++ V + ++ A K F + +
Sbjct: 357 ILIDAFAISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMDGAEKFFRRIKED 416
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
L+P +V +GTL+ G V+ +++ E MR+ V+P+ ++ +++
Sbjct: 417 GLKPNVVVYGTLMKGYSKLNNVERVMRVYE-RMRMQGVEPNQTIYTTIM 464
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 95/198 (47%), Gaps = 5/198 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ + E + I L ++ R P++ +F +I Y +A A ++F
Sbjct: 215 YQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMMIYMYKKAGDYAQARKLFA 274
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+MS + + +FN+L++ ++ + D Q+ + PD SY++L+ +RR
Sbjct: 275 QMSERGIPLSTVTFNSLMSFETDYKEVSNIYD--QMQRTALKPDVVSYSLLIKAYGKARR 332
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT ++ LI + V+EA + + MR + V+PD +
Sbjct: 333 EEEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFK-AMRRHRVEPDLCSYT 391
Query: 232 SLIKGLCAVGELSLALGF 249
+++ ++ A F
Sbjct: 392 TMVLAYVNASDMDGAEKF 409
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + +++T G+ F +++L + + P I ++ YGRA+ A
Sbjct: 138 WNFSEMDFLMLVTAYGKLGDFSRAERVLKYM-NKKGYKPSVISQTALMEAYGRAKQYRKA 196
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVS--PDACSYNIL 162
VF M + + + ++ +L + + K +F+ + EK S PD ++++
Sbjct: 197 EAVFRRMQTSGPEPSAVTYQIILKSFVEGDKYKEAEAIFEDLLNEKRASFKPDQKMFHMM 256
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + A K+F +M +R + + VTF +L + E E + + M R
Sbjct: 257 IYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL---MSFETDYKEVSNIYDQMQRT-A 312
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KPD ++ LIK AL EEM+
Sbjct: 313 LKPDVVSYSLLIKAYGKARREEEALAVFEEML 344
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + + A VFD ++ + ++ +V S+NTL+N + G +D
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M V PD +Y++L++G +++ A ++FDEML + L P VTF TLI G C
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHC 258
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
RVD A+++ + M+ ++ PD + +LI GLC G+L+ A +EM ++ D
Sbjct: 259 KNGRVDLAMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPD 316
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y+ ++ R DE + L H + V P+ + +I+ + ++ A
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFK-LKSAMHASGVXPDVYTYSVLINGLCKESKMDXAN 232
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
++FDEM + +F TL++ G++D +++ Q++ + + PD +YN L++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
L A + DEM + L+P +T+ TLI G C E +D A + ++ M++ N++ D
Sbjct: 293 CKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE-NIRLD 351
Query: 227 AQVFASLIKGLCAVG 241
+ +LI GLC G
Sbjct: 352 DVAYTALISGLCQEG 366
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 99/201 (49%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + D ++ ++ +VP + F +I + + ++ A++++ +M
Sbjct: 215 YSVLINGLCKESKMDXANELFDEMLVKG-LVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
S ++ + ++NTL+ + G +++ DL M K + PD +Y L+ GC L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 333
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A++ M++ ++ V + LI GLC E R +A K+ +M+ V +KPD +
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSV-GLKPDTGTYTM 392
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+I +C G++ +EM
Sbjct: 393 IINEVCKKGDVGKGSKLLKEM 413
>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1092
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K ++ + Y+ II+ L ++KM DE + +QL + P + ++ + +E
Sbjct: 830 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEG-FSPTPCTYGPLLDGLLKDGNIE 888
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +FDEM + +N LLN G +++ +LF+ M E+ ++PD SY +++
Sbjct: 889 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVI 948
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
RL D F ++ L+P L+T+ LI+GL R++EAL L DM + +
Sbjct: 949 DTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEK-KGI 1007
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + SLI L G+ + A EE++
Sbjct: 1008 APNLYTYNSLILYLGKAGKAAEAGKMYEELL 1038
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + D +++ ++K P+E + ++ G++ +E L++ +EM
Sbjct: 769 YNALICGLVDEDLIDIAEELFSEMKR-LGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 827
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + T ++NT+++ ++ +D +L+ Q+M + SP C+Y L+ G + +
Sbjct: 828 HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 887
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA +FDEML+ +P + L+ G + ++ +L E M+ + PD + +
Sbjct: 888 EDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVE-QGMNPDIKSYTV 946
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I LCA G L+ L + +++ +E D
Sbjct: 947 VIDTLCADGRLNDGLSYFKQLTDMGLEPD 975
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 111/217 (51%), Gaps = 11/217 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L + +I L +A +E +I ++LK + + P + + +++ GR ++ +Q+
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELK-EMNLEPTDCTYNTLLAGLGREGKVKEVMQL 578
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+ M+S + + ++NT+L+ + G+++ D L+ + PD SYN +M+G V
Sbjct: 579 LEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL++A+ +F +M K+ L P T T++ + EAL +R Y ++PD++
Sbjct: 639 EGRLDEAFWMFCQM-KKVLAPDYATVCTILPSFVRSGLMKEALH----TVREYILQPDSK 693
Query: 229 V----FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V SL++G+ ++ F E + + + +D
Sbjct: 694 VDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLD 730
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
++L +VP+ ++ N + YG A+ L A +VF E+ + + ++ ++
Sbjct: 439 YELMKSKGIVPD-VVAGNAV-LYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCC 496
Query: 133 LTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
D +F +++E +PD + N L+ + R +AWK+F E+ + L+PT
Sbjct: 497 SKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTD 556
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
T+ TL+ GL E +V E ++L E M + P+ + +++ LC GE++ AL
Sbjct: 557 CTYNTLLAGLGREGKVKEVMQLLEG-MNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLY 615
Query: 252 EMVRN 256
M N
Sbjct: 616 SMTMN 620
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A ++ + + V S+N L+ ++ ID +LF M++ PD +Y++++
Sbjct: 750 AHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILD 809
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
S R+ED K+ +EM + + T VT+ T+I GL +DEA+ L +M
Sbjct: 810 AMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS-EGFS 868
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
P + L+ GL G + A +EM+ E
Sbjct: 869 PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 903
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 8/216 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L + YN L Y L+ + R E + + D VVP + ++ +G+ R
Sbjct: 169 LNAYTYNGLIYFLVKSGFDR-----EAMDVYKAMAADG-VVPTVRTYSVLMLAFGKRRDA 222
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E + + EM + V+ V S+ + + G+++ + + M E+ PD + +L
Sbjct: 223 ETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVL 282
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + RL DA VF +M +P VT+ TL+ C + ++ + ++
Sbjct: 283 IQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLL-DKCGDSGDSRSVSEIWNALKADG 341
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + + + LC VG + AL +EM + I
Sbjct: 342 YNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGI 377
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 18/229 (7%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A KP R + Y ++ K G + V +I + LK D NV+S+
Sbjct: 303 KASDQKPDR---VTYITLLDKCGDSGDSRSVSEIWNALKADGYND-------NVVSYTAA 352
Query: 100 ARLL------EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV- 152
L + AL VFDEM + S+N+L++ L + +R +LF M +
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+P+ ++ + ++ S A K ++ M + + P +V ++YGL R+ A +
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + ++ + PD + +IK A+ EM+ N+ D
Sbjct: 473 VFHE-LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPD 520
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L ++ QL D + P+ I + +I G++ LE AL ++++M
Sbjct: 944 YTVVIDTLCADGRLNDGLSYFKQLT-DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + ++N+L+ + GK ++ +++ K P+ +YN L+ G VS
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSP 1062
Query: 173 EDAWKVFDEMLKRRLQPTLVTF 194
E+A+ + M+ +P T+
Sbjct: 1063 ENAFAAYGRMIVGGCRPNSSTY 1084
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ +V + +I F ++ A+ V+ M++ V TV++++ L+ A +
Sbjct: 164 EAGIVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAE 223
Query: 140 RMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ L ME + V P+ SY I + + RLE+A+++ +M + +P +VT LI
Sbjct: 224 TVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLI 283
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
LC R+ +A + M+ + KPD + +L+
Sbjct: 284 QILCDAGRLADAKDVFWK-MKASDQKPDRVTYITLL 318
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + FD+ + + D P+ + F +I Y RA+ ++ +Q+ E+
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + ++NTL++ ++ DLFQ M + V PD + NIL++G + +L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A ++F+ + ++ V + +I+G+C +VDEA L + ++ V+PD Q +
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 577
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I G C +S A +M N E D
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
CN VI + R + A+ ++ +M + + SFN L+ C K+ F +
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAW---------------KVFDEMLKRRLQPTLVT 193
K PD ++N L+HG + R+ +A +FD+M++ L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI GLCLE RV EA L M+ + D + +++ G+C +G+ AL +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVG-KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287
Query: 254 VRNKIEMD 261
I+ D
Sbjct: 288 EETHIKPD 295
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K +++ Y I+ G KM D + L +T + P+ +I+ +I +
Sbjct: 255 KGLHIDVVTYGTIVN--GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 312
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +F EM + V ++N +++ + G+ L + M E+ ++PD ++N L
Sbjct: 313 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 372
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ V +L +A K+ DEML R + P VT+ ++IYG C R D+A K D+M
Sbjct: 373 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA-KHMFDLM---- 427
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD F ++I C + + E+ R
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 78 KHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K + R +P I N+ I + L +L F +++ Q V +FNTLL+ +
Sbjct: 131 KMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLED 190
Query: 137 KIDRMTDLF----------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+I LF Q++E ++P ++N L++G + R+ +A + +
Sbjct: 191 RISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVN 250
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M+ + L +VT+GT++ G+C AL L M + +KPD +++++I LC
Sbjct: 251 KMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH-IKPDVVIYSAIIDRLCKD 309
Query: 241 GELSLALGFKEEMVRNKI 258
G S A EM+ I
Sbjct: 310 GHHSDAQYLFSEMLEKGI 327
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI + K+F E +++ ++ H + P+ + + ++I + + + A +FD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
+V +FNT+++ ++D M L +I + + + +YN L+HG L
Sbjct: 430 PDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544
Query: 235 KGLC 238
G+C
Sbjct: 545 HGMC 548
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A+ FD M T N ++ + + D L++ ME + + + S+NI
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------ 215
L+ +L + F ++ K QP +VTF TL++GLCLE R+ EAL L
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
Query: 216 --------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D M + P F +LI GLC G + A +MV + +D
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N Y+ +I + Q + ++ + V + I CN++ YG LE AL
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMI--SHGVCPDTITCNIL-LYGFCENEKLEEAL 522
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+ + + ++N +++ M K+D DLF + + V PD +YN+++ G
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ DA +F +M +P T+ TLI G +D++++L +M
Sbjct: 583 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
A QLFK A+ P R + Y ++ A +E + +L +K +
Sbjct: 313 AKQLFKE-------MAAKSCLPDR---ITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + V++ Y RA+ A + EM + NV ++++L++ + G+++ ++
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ ++K PD +Y I++ G + R E+A + +EM+ +R++P++ TF ++I LC
Sbjct: 423 LKNVDK---PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRL 479
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+DEA KL M + ++P + +L++G G + +A E M R
Sbjct: 480 GDMDEAWKLLV-AMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRR 529
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 6/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ L R D +++ ++K V P++ F +I+ + AR ++ AL++
Sbjct: 80 DVVTYTSVVDGLCRDGKMDRACEMVREMKLKG-VEPDKFTFSALITGWCNARKVDEALKL 138
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHG 165
+ E+ + + + S + L+ + +I +LFQ ME PD +Y L+ G
Sbjct: 139 YKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDG 198
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S LE A K+ M R+ P +VT+ +L++GLC +D+AL L M V P
Sbjct: 199 FCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV-P 257
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + +LI GLCA ++ A +EM
Sbjct: 258 NVVTYTTLIHGLCAAHKVDAARLLMDEMT 286
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 104/213 (48%), Gaps = 10/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L A D + ++ ++ T + + + ++ Y R +E A Q+
Sbjct: 258 NVVTYTTLIHGLCAAHKVDAARLLMDEMTA-TCCPADTVSYNALLDGYCRLGRIEEAKQL 316
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCV 167
F EM++ + ++ L+ +++ L + M+ + PD +Y+I++ G
Sbjct: 317 FKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 376
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV-KPD 226
++R +A + EM+ R + P VT+ +LI GLC RV+ A+++ + NV KPD
Sbjct: 377 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV------LKNVDKPD 430
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +I+GLC AL EEMV ++E
Sbjct: 431 VVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVE 463
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 2/218 (0%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
++ +++ Y +I ++ ++ ++L ++ + VP + + +++ +A L+
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEG-RKCVPNVVTYSSLLHGLCKAGDLDQ 242
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMH 164
AL +F M+S V ++ TL++ + K+D L M P D SYN L+
Sbjct: 243 ALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLD 302
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R+E+A ++F EM + P +T+ L+ G C R++EA L E+M +
Sbjct: 303 GYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGID 362
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD ++ ++ G A F +EM+ + +A
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNA 400
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
V P E + V++ +ARL A +V EM +V + +++T++N G++DR
Sbjct: 5 VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64
Query: 142 TDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++ + + ++PD +Y ++ G +++ A ++ EM + ++P TF LI
Sbjct: 65 CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALIT 124
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
G C +VDEALKL ++++ + + DA ++LI GLC
Sbjct: 125 GWCNARKVDEALKLYKEIL-TSSCRLDAVSSSALITGLC 162
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELR 206
M ++V+P+ +YN++++G +R A++V EM + + P LVT+ T+I G C +
Sbjct: 1 MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D A ++ +M+ + PD + S++ GLC G++ A EM +E D
Sbjct: 61 MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPD 115
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+++N ++N + + ++ + M K V+PD +Y+ +++G ++ A ++
Sbjct: 10 RTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILR 69
Query: 181 EMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
EM+ R + P +VT+ +++ GLC + ++D A ++ +M ++ V+PD F++LI G C
Sbjct: 70 EMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREM-KLKGVEPDKFTFSALITGWCN 128
Query: 240 VGELSLALGFKEEMVRNKIEMDA 262
++ AL +E++ + +DA
Sbjct: 129 ARKVDEALKLYKEILTSSCRLDA 151
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I L +E +L ++ + RV P F +VI R ++ A ++
Sbjct: 430 DVVTYTIVIEGLCGTDRTEEALTLLEEMVNK-RVEPSVGTFNSVIGALCRLGDMDEAWKL 488
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI-------- 161
M++ ++ + ++ TLL G+++ +LF++M + + + N+
Sbjct: 489 LVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSA 548
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G +R ++ A V +E+ R +P ++ GL R +EA KL + +V
Sbjct: 549 LIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKV 607
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 109/211 (51%), Gaps = 3/211 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K + NL Y+ II L ++ D+ +++L ++ + +VP+ +++ +I + + +
Sbjct: 38 MKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQG-IVPDTVVYTTLIDGFCKLGNI 96
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
+ A ++FDEM + ++ ++ + CGK+ +F M + V PD +Y L
Sbjct: 97 QAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTL 156
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G S +E A+ + ++M++ L P +VT+ L GLC +VD A +L +M
Sbjct: 157 IDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCG-KG 215
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ + + SL+ GLC G + A+ EEM
Sbjct: 216 LQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + + VI+ Y L+ L++ EM ++ + ++N+++ + GK+D
Sbjct: 7 APDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAER 66
Query: 144 LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ +++ + + PD Y L+ G ++ A+K+FDEM K+R+ P + + +I GLC
Sbjct: 67 VLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLC 126
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ EA K+ M V+PD + +LI G C GE+ A +MV++ +
Sbjct: 127 RCGKMMEADKVFNKMFS-RGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGL 181
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 6/205 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E Q + P + + Y +I L R E ++ +++ V P+E+ + +I Y +
Sbjct: 107 EKQRIVP---DFIAYTAVICGLCRCGKMMEADKVFNKM-FSRGVEPDEVTYTTLIDGYCK 162
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ +E A + ++M + V ++ L + + G++D +L M K + + C+
Sbjct: 163 SGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT 222
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L++G S + A K+ +EM + P +TF TL+ C + +A +L +M+
Sbjct: 223 YNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREML 282
Query: 219 RVYNVKPDAQVFASLIKGLCAVGEL 243
++P F L+ G C G L
Sbjct: 283 D-RGLQPTVITFNVLMNGFCMSGML 306
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y + L + D ++LH++ + + ++++ ++ + A+++
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEM-CGKGLQLNICTYNSLVNGLCKSGNIRQAVKL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+EM + +F TL++A G++ + +L +++++ + P ++N+LM+G +
Sbjct: 243 MEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCM 302
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S LED ++ ML++ + P T+ +L+ C+ + ++ + M V PD+
Sbjct: 303 SGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMC-ARGVMPDSN 361
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LIKG C + A +EM + A
Sbjct: 362 TYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTA 395
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V S++T++N G++ ++ L Q M+ K + P+ +YN ++ S +++DA +V
Sbjct: 10 VVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLR 69
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM+ + + P V + TLI G C + A KL ++M + + PD + ++I GLC
Sbjct: 70 EMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEK-QRIVPDFIAYTAVICGLCRC 128
Query: 241 GELSLALGFKEEMVRNKIEMD 261
G++ A +M +E D
Sbjct: 129 GKMMEADKVFNKMFSRGVEPD 149
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 5/220 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y+ ++ L ++ + +++ +++ + P+ I F ++ Y + +
Sbjct: 214 KGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEV-AGMYPDTITFTTLMDAYCKTGEMV 272
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A ++ EM +Q TV +FN L+N G ++ L M EK + P+ +YN LM
Sbjct: 273 KAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYN 222
+ + +++ M R + P T+ LI G C + EA L ++M + +N
Sbjct: 333 KQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFN 392
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ A + S+IKG ++S A EEM R + DA
Sbjct: 393 LT--ASSYNSIIKGFFKKKKISEARELFEEMRREGMAADA 430
>gi|79568177|ref|NP_181166.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206301|sp|Q9SJN2.1|PP187_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g36240
gi|4510352|gb|AAD21441.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254126|gb|AEC09220.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 497
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-------QLKHDTRVVPE-EIIFCN 92
A L FR++ + + L FD++ ++L PE E IF +
Sbjct: 103 AATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEPIFRS 162
Query: 93 VISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK- 150
I Y RAR +++AL FD M + + V +NT++N + G +D+ +Q M K
Sbjct: 163 AIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKE 222
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
PD C++NIL++G S + + A +F EM ++ +P +V+F TLI G +++E
Sbjct: 223 RAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEG 282
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+K+ +M+ + + L+ GLC G + A G +++ ++
Sbjct: 283 VKMAYEMIEL-GCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRV 329
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 2/194 (1%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
RA+ D +K P ++ V++ Y ++ ++ AL+ + M + V
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+FN L+N K D DLF+ M EK P+ S+N L+ G + S ++E+ K+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYE 288
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ + + T L+ GLC E RVD+A L D++ V P + SL++ LC
Sbjct: 289 MIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLN-KRVLPSEFDYGSLVEKLCGEN 347
Query: 242 ELSLALGFKEEMVR 255
+ A+ EE+ +
Sbjct: 348 KAVRAMEMMEELWK 361
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
F EM + V SFNTL+ L+ GKI+ + ++++E + IL+ G
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + ++L +R+ P+ +G+L+ LC E + A+++ E++ + P
Sbjct: 311 EGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQT-PCFI 369
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L++GL G A GF E+M+ I D+
Sbjct: 370 ACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDS 403
>gi|110742004|dbj|BAE98941.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 497
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-------QLKHDTRVVPE-EIIFCN 92
A L FR++ + + L FD++ ++L PE E IF +
Sbjct: 103 AATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEPIFRS 162
Query: 93 VISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK- 150
I Y RAR +++AL FD M + + V +NT++N + G +D+ +Q M K
Sbjct: 163 AIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKE 222
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
PD C++NIL++G S + + A +F EM ++ +P +V+F TLI G +++E
Sbjct: 223 RAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEG 282
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+K+ +M+ + + L+ GLC G + A G +++ ++
Sbjct: 283 VKMAYEMIEL-GCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRV 329
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 2/194 (1%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
RA+ D +K P ++ V++ Y ++ ++ AL+ + M + V
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+FN L+N K D DLF+ M EK P+ S+N L+ G + S ++E+ K+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYE 288
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ + + T L+ GLC E RVD+A L D++ V P + SL++ LC
Sbjct: 289 MIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLN-KRVLPSEFDYGSLVEKLCGEN 347
Query: 242 ELSLALGFKEEMVR 255
+ A+ EE+ +
Sbjct: 348 KAVRAMEMMEELWK 361
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
F EM + V SFNTL+ L+ GKI+ + ++++E + IL+ G
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + ++L +R+ P+ +G+L+ LC E + A+++ E++ + P
Sbjct: 311 EGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQT-PCFI 369
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L++GL G A GF E+M+ I D+
Sbjct: 370 ACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDS 403
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 103/203 (50%), Gaps = 4/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I +L + K +E + ++ H +VP + + ++I ++ + +A + DEM
Sbjct: 338 YNIMINRLCKIKRVEEALNLYKEM-HQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEM 396
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV-SRR 171
V ++N+L+N + G++D+ L M ++ + PD + NIL+HG + +R
Sbjct: 397 HDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKR 456
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L++A +F ++L + P + T+ +IYG C E +DEA L+ M P+A F
Sbjct: 457 LKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSK-MEDSGCSPNAITFK 515
Query: 232 SLIKGLCAVGELSLALGFKEEMV 254
+I L GE A EM+
Sbjct: 516 IIICALLEKGETDKAEKLLCEMI 538
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 110/236 (46%), Gaps = 32/236 (13%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEH 105
FR + + Y +I + + Q+L ++ D R+ P +++ +I + +L+
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRI--DGRLTEPNVVMYNTIIDCLCKRKLVSE 221
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMH 164
A +F EMS + V +++ +++ GK+ + + L +++ K ++PD YN L+
Sbjct: 222 ACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVD 281
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG------------------------ 200
++++A V ++K L+P ++T+ TLI G
Sbjct: 282 ALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIM 341
Query: 201 ---LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC RV+EAL L ++M + N+ P+ + SLI GLC G +S A +EM
Sbjct: 342 INRLCKIKRVEEALNLYKEMHQ-KNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEM 396
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 34/242 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II L + K+ E + ++ + + + +I + L AL
Sbjct: 202 NVVMYNTIIDCLCKRKLVSEACNLFSEMSVKG-ISANVVTYSAIIHGFCIVGKLTEALGF 260
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
+EM + V +NTL++A+ GK+ ++ ++ K
Sbjct: 261 LNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAK 320
Query: 152 ----------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
V+PD SYNI+++ +R+E+A ++ EM ++ + P VT+ +LI GL
Sbjct: 321 HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGL 380
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQV--FASLIKGLCAVGELSLALGFKEEMVRNKIE 259
C R+ A L ++M ++ A V + SLI GLC G+L A+ +M I+
Sbjct: 381 CKSGRISYAWDLIDEM---HDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQ 437
Query: 260 MD 261
D
Sbjct: 438 PD 439
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 5/175 (2%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QI 147
I N G+ L A V ++ + Q + TL+ + G++ + ++
Sbjct: 103 ILINCFCHLGQINL---AFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKL 159
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ + D SY L++G A ++ + R +P +V + T+I LC V
Sbjct: 160 LAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLV 219
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
EA L +M V + + ++++I G C VG+L+ ALGF EMV I D
Sbjct: 220 SEACNLFSEM-SVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDV 273
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ AL F M + FN +L++ + L + +E K + PD + NI
Sbjct: 44 VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ ++ A+ V ++LK QP VT TLI GLCL+ +V +AL D +
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHF-HDKLLAQ 162
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ D + +LI G+C +GE A+
Sbjct: 163 GFRLDQVSYGTLINGVCKIGETRAAI 188
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 4/164 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I ++ AL D++ + + S+ TL+N + G+ L
Sbjct: 131 PDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQL 190
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRL-EDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ I + P+ YN ++ C+ R+L +A +F EM + + +VT+ +I+G C
Sbjct: 191 LRRIDGRLTEPNVVMYNTII-DCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFC 249
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ ++ EAL +M+ + + PD ++ +L+ L G++ A
Sbjct: 250 IVGKLTEALGFLNEMV-LKAINPDVYIYNTLVDALHKEGKVKEA 292
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP +++ Y +I L R D+ + +Q+ D V P++ + C +
Sbjct: 421 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQG 476
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + + + F++++N + G++ ++F + + + P
Sbjct: 477 FCTHGSLLK-AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 535
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
DA YN+LM G + ++E A +VFD M+ ++P +V +GTL+ G C R+DE L L
Sbjct: 536 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 595
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP +++ +I GL G A EM + I MD
Sbjct: 596 REMLQ-RGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 256 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG--- 165
F EM ++ V + + L+ ++ GKI D+F M K +PD SYNI+++G
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 374
Query: 166 --CVVSRR------------------------------LEDAWKVFDEMLKRRLQPTLVT 193
C+V L+ A +F+EM ++P +VT
Sbjct: 375 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 434
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I LC ++D+A++ K + M V PD + LI+G C G L A E+
Sbjct: 435 YRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 493
Query: 254 VRNKIEMD 261
+ N + +D
Sbjct: 494 MNNGMHLD 501
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
P+LAL F Q L+ R N++ + ++ AK DE IL +
Sbjct: 130 PELALAFF-----------GQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 178
Query: 81 TRVVPEEI---IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
VP+ I + G++ + L++ E + V ++NT+++ G
Sbjct: 179 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGD 237
Query: 138 IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+++ DLF +++++ + PD +YN ++H +R ++ A +M+ +R+ P T+
Sbjct: 238 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 297
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LIYG + EA+++ ++M R +++ PD + L+ LC G++ A
Sbjct: 298 LIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSMLMGSLCKYGKIKEA 346
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 496 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVG 551
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM------------- 148
+E AL+VFD M S ++ V + TL+N G+ID LF+ M
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611
Query: 149 -----------------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
E ++ D C+YNI++ G +R ++A +F E+
Sbjct: 612 IIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 671
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ ++T T+I G+ RV+EA L + R V P ++ +I L G
Sbjct: 672 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV-PSVVTYSIMITNLIKEG 726
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
++ Y +++ L + +L + V P + + VI + + + A
Sbjct: 184 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 243
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCV 167
+F EM + + ++N++++A+ +D+ L Q++ K V P+ +YN L++G
Sbjct: 244 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + ++A +VF EM + + P +VT L+ LC ++ EA + D M + PD
Sbjct: 304 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF-DTMAMKGQNPDV 362
Query: 228 QVFASLIKGLCAVGEL 243
+ ++ G G L
Sbjct: 363 FSYNIMLNGYATKGCL 378
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ +SP + +Y ILM C + R E A F ++L+ L+ ++ L+ G C R DE
Sbjct: 108 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 167
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
AL + PD ++ L+K LC G+
Sbjct: 168 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK 200
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDA 156
RA E AL F ++ ++ + N LL + D D L + E PD
Sbjct: 126 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 185
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLK 214
SY+IL+ + A + M + P +V + T+I G E V++A L
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++M++ + PD + S++ LC + A F +MV ++
Sbjct: 246 KEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + FD+ + + D P+ + F +I Y RA+ ++ +Q+ E+
Sbjct: 399 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 453
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + ++NTL++ ++ DLFQ M + V PD + NIL++G + +L
Sbjct: 454 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 513
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A ++F+ + ++ V + +I+G+C +VDEA L + ++ V+PD Q +
Sbjct: 514 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 572
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I G C +S A +M N E D
Sbjct: 573 MISGFCGKSAISDANVLFHKMKDNGHEPD 601
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
CN VI + R + A+ ++ +M + + SFN L+ C K+ F +
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDA----------WKVFDEMLKRRLQPTLVTFGTLI 198
K PD ++N L+HG + R+ +A +FD+M++ L P ++TF TLI
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLI 228
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
GLCLE RV EA L M+ + D + +++ G+C +G+ AL +M I
Sbjct: 229 NGLCLEGRVLEAAALVNKMVG-KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHI 287
Query: 259 EMD 261
+ D
Sbjct: 288 KPD 290
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K +++ Y I+ G KM D + L +T + P+ +I+ +I +
Sbjct: 250 KGLHIDVVTYGTIVN--GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 307
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +F EM + V ++N +++ + G+ L + M E+ ++PD ++N L
Sbjct: 308 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 367
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ V +L +A K+ DEML R + P VT+ ++IYG C R D+A K D+M
Sbjct: 368 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA-KHMFDLM---- 422
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD F ++I C + + E+ R
Sbjct: 423 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 455
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 78 KHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K + R +P I N+ I + L +L F +++ Q V +FNTLL+ +
Sbjct: 131 KMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLED 190
Query: 137 KIDRMTDLF-----------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+I LF Q++E ++P ++N L++G + R+ +A + ++M+ +
Sbjct: 191 RISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGK 250
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L +VT+GT++ G+C AL L M + +KPD +++++I LC G S
Sbjct: 251 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH-IKPDVVIYSAIIDRLCKDGHHSD 309
Query: 246 ALGFKEEMVRNKI 258
A EM+ I
Sbjct: 310 AQYLFSEMLEKGI 322
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI + K+F E +++ ++ H + P+ + + ++I + + + A +FD M+S
Sbjct: 367 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 424
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
+V +FNT+++ ++D M L +I + + + +YN L+HG L
Sbjct: 425 PDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 480
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 481 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 539
Query: 235 KGLC 238
G+C
Sbjct: 540 HGMC 543
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A+ FD M T N ++ + + D L++ ME + + + S+NI
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------ 215
L+ +L + F ++ K QP +VTF TL++GLCLE R+ EAL L
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
Query: 216 ---DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D M + P F +LI GLC G + A +MV + +D
Sbjct: 207 SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 255
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N Y+ +I + Q + ++ + V + I CN++ YG LE AL
Sbjct: 461 NTTTYNTLIHGFCEVDNLNAAQDLFQEMI--SHGVCPDTITCNIL-LYGFCENEKLEEAL 517
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+ + + ++N +++ M K+D DLF + + V PD +YN+++ G
Sbjct: 518 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 577
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ DA +F +M +P T+ TLI G +D++++L +M
Sbjct: 578 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 628
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R NL+ Y ++I ++ E +L +++ + + + ++ ++IS + +E
Sbjct: 182 RPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREG-LKADVFVYSSLISAFCGEGDIETGR 240
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
++FDEM V V +++ L+ + G+ +++ + M + V PD +Y +L G
Sbjct: 241 ELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGL 300
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ R DA KV D M+++ +P +T+ ++ GLC E R+D+A + E MM KPD
Sbjct: 301 CKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVE-MMVKKGKKPD 359
Query: 227 AQVFASLIKGLCAVGELSLAL 247
A + +L+KGLC G++ A+
Sbjct: 360 AVTYNTLLKGLCGAGKIHEAM 380
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ +AK E + + +K P + + +I Y ++ + L + +EM
Sbjct: 152 YNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEM 211
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
++ V +++L++A G I+ +LF +++ + VSP+ +Y+ LM G + R
Sbjct: 212 EREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRW 271
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ +M R ++P +V + L GLC R +A+K+ D+M +P +
Sbjct: 272 REASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVL-DLMVQKGEEPGTLTYNV 330
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ GLC + A G E MV+ + DA
Sbjct: 331 VVNGLCKEDRMDDAFGVVEMMVKKGKKPDA 360
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+V P + + ++ GR A ++ +M++ V+ V ++ L + + G+
Sbjct: 250 KVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDA 309
Query: 142 TDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+ +M +K P +YN++++G R++DA+ V + M+K+ +P VT+ TL+ G
Sbjct: 310 IKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKG 369
Query: 201 LCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
LC ++ EA+ L + ++ ++VKPD +LI+GLC G + A MV
Sbjct: 370 LCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMV 424
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + V++ + ++ A V + M + ++NTLL + GKI DL
Sbjct: 323 PGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDL 382
Query: 145 FQIM--EKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++++ EK+ V PD + N L+ G R+ DA ++ M++ LQ +VT+ LI G
Sbjct: 383 WKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGY 442
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
++ EALKL + + P++ ++ +I GLC + LS+A G
Sbjct: 443 LAARKLIEALKLWKYAVE-SGFSPNSMTYSVMINGLCKMQMLSVARGL 489
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I A+ E + L + ++ P + + +I+ + ++L A +
Sbjct: 431 NIVTYNFLIEGYLAARKLIEALK-LWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGL 489
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVV 168
F +M ++ TV +N L+ ++ +++ LFQ M + D S+NI++ G +
Sbjct: 490 FCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLK 549
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A ++ EM L P VTF LI +DEA+ L E M+ +V P
Sbjct: 550 AGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHV-PGVV 608
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
VF SL+KG GE + +M + +D+
Sbjct: 609 VFDSLLKGYGLKGETEKIISLLHQMADKDVVLDS 642
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D V + +D P E +I +AR + + V+ +M S V S +
Sbjct: 23 DAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSA 82
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L + + + +M K + + N+++ G S + + A +F +M +
Sbjct: 83 LTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNY 142
Query: 187 --LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ P VT+ TL+ G C R+ EA L E M + + +P+ ++ LI C GE+
Sbjct: 143 DCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVG 202
Query: 245 LALGFKEEMVRNKIEMD 261
LG EEM R ++ D
Sbjct: 203 EGLGLLEEMEREGLKAD 219
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++ L A E + L + V ++ CN +I + + A ++
Sbjct: 363 YNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSS 422
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRR 171
M +Q + ++N L+ L K+ L++ +E SP++ +Y+++++G +
Sbjct: 423 MVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQM 482
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L A +F +M ++PT++ + L+ LC E +++A L ++M V N D F
Sbjct: 483 LSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNV-NHNVDVVSFN 541
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
+I G G++ A EM
Sbjct: 542 IIIDGTLKAGDVKSAKELLSEM 563
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y I+ +E + Q+ V+P + F ++ + ++ A +V
Sbjct: 245 NVVTYSSILHGFCNLGQLNEATSLFKQMI-GRNVMPNTVTFTILVDGLCKEGMILEARRV 303
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F+ M+ V+ +++ L++ ++D LF IM K +P YNIL++G
Sbjct: 304 FEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCK 363
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
SRRL +A + EM R L P VT+ TL+ G C R A KL ++M Y + PD+
Sbjct: 364 SRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS-YGLLPDSI 422
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ L+ GLC G L A + M +KIE
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIE 453
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 9/230 (3%)
Query: 40 EAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93
EAQ L K F ++ Y+++I +++ +E + +L ++ +D + P+ + + +
Sbjct: 334 EAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEM-YDRDLTPDTVTYSTL 392
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYV 152
+ + +A + A ++F EM S+ + +++ LL+ + G +D L + M E +
Sbjct: 393 MQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKI 452
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P C YNIL+ G +LE A ++F + + +QP++VT+ +I GL E +EA +
Sbjct: 453 EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACE 512
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ M+ V P++ + I+G G+ S A+ EEMV D+
Sbjct: 513 MFRKMV-VNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADS 561
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+FDE+ ++ P I + +I + +ALQ+ +M + V +
Sbjct: 162 KLFDEIGKM--------GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVA 213
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+NT+++++ + + F +++++ + P+ +Y+ ++HG +L +A +F +M+
Sbjct: 214 YNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMI 273
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R + P VTF L+ GLC E + EA ++ E MM V+PDA +++L+ G C
Sbjct: 274 GRNVMPNTVTFTILVDGLCKEGMILEARRVFE-MMTENGVEPDAYTYSALMDGYC 327
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 3/153 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A +M +Q T +F TLLN + + KI LF +I + +P +Y ++
Sbjct: 125 AFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIK 184
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +A ++ +M ++ +P +V + T+I LC + R +EA+ +M+ +
Sbjct: 185 GLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVD-QGIP 243
Query: 225 PDAQVFASLIKGLCAVGELSLALG-FKEEMVRN 256
P+ ++S++ G C +G+L+ A FK+ + RN
Sbjct: 244 PNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN 276
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 6/181 (3%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
R +P ++F ++ + + + + +M N++ V + L+N + + D +
Sbjct: 64 RPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNR-DHV 122
Query: 142 TDLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
F + K + P ++ L++G ++ DA K+FDE+ K P+L+T+ T+
Sbjct: 123 HFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTI 182
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I GLC AL+L + M KPD + ++I LC + A+ F EMV
Sbjct: 183 IKGLCKIGHTTNALQLLKKMEE-KGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQG 241
Query: 258 I 258
I
Sbjct: 242 I 242
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 73/148 (49%), Gaps = 2/148 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y +++ L + DE ++L ++ ++++ P I+ +I LE A ++F
Sbjct: 422 ITYSILLDGLCKHGHLDEAFRLLKAMQ-ESKIEPHICIYNILIQGMCNFGKLEAARELFS 480
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSR 170
+ +Q +V ++ +++ +L G + ++F+ M P++C+YN+ + G + +
Sbjct: 481 NLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNG 540
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+A ++ +EM+ R TF L+
Sbjct: 541 DPSNAVRLIEEMVGRGFSADSSTFQMLL 568
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 126/254 (49%), Gaps = 26/254 (10%)
Query: 22 PKLALQLFKNPNPNPNN-------TEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
P + + KNP PN+ A + R + + +++II L + F+ Q+L
Sbjct: 59 PSIVTYIIKNP---PNSLLGFRFFIWASKFRRLR-SWVSHNMIIDMLIKDNGFELYWQVL 114
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM-- 132
++K + + F +I Y + ++E A++ F+ M F+ + V ++NT+L+ M
Sbjct: 115 KEIKRCGFSISADA-FTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVR 173
Query: 133 -----LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L G +RM L + P+ +++IL+ G S + ++A ++FDEM +RR+
Sbjct: 174 KEVVLLALGIYNRMLKLNCL------PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRI 227
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +T+ +I GLC + D A +L M+ + PD+ + +L+ G C +G + AL
Sbjct: 228 LPNKITYTIIISGLCQAQKADVAYRL-FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEAL 286
Query: 248 GFKEEMVRNKIEMD 261
G + +++ +D
Sbjct: 287 GLLKYFEKDRYVLD 300
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y ++I + R+ + + QQI +++ KH P + F +I + +A +E A +F +
Sbjct: 409 YTILICGMCRSGLVGDAQQIFNEMEKHG--CYPSVVTFNALIDGFCKAGNIEKAQLLFYK 466
Query: 113 MS-----------SFNVQRTV--KSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACS 158
M S R + S T++ + G I + + L Q+ + +P+ +
Sbjct: 467 MEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIIT 526
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL+HG + + A+K+F E+ + L P VT+GTLI GL R ++A + + ++
Sbjct: 527 YNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQIL 586
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ P +V+ S + C +++LA + +R+
Sbjct: 587 K-NGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRS 623
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RA+ F++ Q + ++ + + P+ I++ ++ +A + AL++ +EM
Sbjct: 304 YSCLIDGLFRARRFEDAQ-VWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEM 362
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + +N L+ G +D L +I + AC+Y IL+ G S +
Sbjct: 363 TERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLV 422
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
DA ++F+EM K P++VTF LI G C +++A
Sbjct: 423 GDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKA 460
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ ++I + M ++ + +K D P+ + V+ R ++ AL +++ M
Sbjct: 129 FTVLIQAYAKMDMIEKAVESFEMMK-DFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRM 187
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
N + +F+ L++ M GK +F ++ ++ + P+ +Y I++ G +++
Sbjct: 188 LKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKA 247
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK------------------ 214
+ A+++F M P VT+ L++G C RVDEAL L
Sbjct: 248 DVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCL 307
Query: 215 ----------EDM------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
ED M +N+KPD ++ ++KGL G+ AL EM +
Sbjct: 308 IDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGL 367
Query: 259 EMDA 262
D
Sbjct: 368 VPDT 371
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 45/228 (19%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+MFDE+ Q R++P +I + +IS +A+ + A ++F M +
Sbjct: 217 QMFDEMTQ--------RRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVT 268
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEK---------------------------------- 150
+N LL+ G++D L + EK
Sbjct: 269 YNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMT 328
Query: 151 --YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ PD Y I+M G + + +DA ++ +EM +R L P + LI G C +D
Sbjct: 329 EHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLD 388
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
EA L ++ + + A + LI G+C G + A EM ++
Sbjct: 389 EAKSLHLEISK-NDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKH 435
>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
Length = 478
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
R RL E AL +F EM + TV ++ T+++ + G D +F M + VSP+
Sbjct: 210 RGRLAE-ALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLV 268
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+ L+ G R A ++ D M+K + P +T+ ++I GLC E + EA+++ D
Sbjct: 269 TYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVL-DR 327
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
MR+ KPDA +F LI GLC G A + +EMV IE
Sbjct: 328 MRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIE 369
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 124/296 (41%), Gaps = 43/296 (14%)
Query: 2 NKAKPTSPFRLAS-----LLRLQKDPKLALQLFKN---------PNP-NPNNTEAQPLKP 46
N P P L + L+R ++DP+ AL +F P+P P+ L
Sbjct: 5 NSTPPKWPKTLTADHLHRLVRAERDPRRALAIFDGATAAASTSAPDPITPSPATVSLLTS 64
Query: 47 FRYNLLHYDLIITKLGRAK------------------MFDEVQQILHQLKHDTRVVPEEI 88
+ H L + L R++ F + L L H R P ++
Sbjct: 65 RLASAGHLPLATSLLSRSRGVFPSVAALEPPFLGLLRAFSRTHRPLAAL-HLFRSAPSDL 123
Query: 89 IFCNVISFYGR--ARLLEH-----ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ Y A L+ H A + +M + T ++N LL A + +
Sbjct: 124 ALPHSARSYNAVLAALVAHSHLPLARSLLADMRAAGFAPTAATYNVLLKAHCS-DAAAHI 182
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D ++ PD CSYN ++ G RL +A +F EM+ + + PT+VT+ T+I+ L
Sbjct: 183 EDALRLFRNIPKPDVCSYNTIIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWL 242
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E D+ALK+ +M R V P+ ++SLI GLC G + AL + MV+ K
Sbjct: 243 AREGCFDDALKIFHEMGR-RGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEK 297
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/255 (20%), Positives = 98/255 (38%), Gaps = 61/255 (23%)
Query: 25 ALQLFKN-PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83
AL+LF+N P P+ + Y+ II L R E + ++ +
Sbjct: 185 ALRLFRNIPKPD---------------VCSYNTIIDGLCRRGRLAEALDMFSEMVGKC-I 228
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK------ 137
P + + VI + R + AL++F EM V + ++++L++ + G+
Sbjct: 229 APTVVTYTTVIHWLAREGCFDDALKIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALE 288
Query: 138 -IDRMTD----------------------LFQIME-------KYVSPDACSYNILMHGCV 167
+DRM L + ME + PDA + L+ G
Sbjct: 289 LLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLC 348
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFG-------TLIYGLCLELRVDEALKLKEDMMRV 220
+ R +A DEM+ ++P VT+ T++ LC + + A ++ + R
Sbjct: 349 DAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQS-TRT 407
Query: 221 YNVKPDAQVFASLIK 235
++ D F L++
Sbjct: 408 RSISTDPTTFHLLVE 422
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II L + + + + ++ H + P + ++I +H + +EM
Sbjct: 202 YTSIIDSLCKDRQVTQAFNLFSEMIHQG-ISPSIFTYNSLIHALCNLCEWKHVTALLNEM 260
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + V F+T+++A+ GK+ D+ +M ++ V P+ +YN LM G + +
Sbjct: 261 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 320
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A KVFD M+ + P +V++ TLI G C R+++A+ L E+M R + P+ +++
Sbjct: 321 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR-KELIPNTVTYST 379
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ GLC VG L A+ EMV
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMV 401
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A++VFD M V S++TL+N +I++ LF+ M K + P+ +Y+
Sbjct: 320 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LMHG RL+DA +F EM+ R P V++ L+ LC R+DEA+ L + +
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLK-AIEGS 438
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD Q++ +I G+C GEL A
Sbjct: 439 NMDPDIQIYTIVIDGMCRAGELEAA 463
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNIL 162
L + +M SF + + + N L+N+ + R+ F ++ K + P+ ++N L
Sbjct: 79 LSLSHQMDSFGIPPNIYTLNILINSFC---HLQRLGFAFSVLAKILKLGHQPNIATFNTL 135
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G V ++ + +FD+M+ QP +VT+GTLI GLC A++L M + N
Sbjct: 136 IRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GN 194
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+PD V+ S+I LC +++ A EM+ I
Sbjct: 195 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGIS 231
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 5/204 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSS 115
++ + + K + V + HQ+ D+ +P I N+ I+ + + L A V ++
Sbjct: 65 LLISITKMKHYSTVLSLSHQM--DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILK 122
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
Q + +FNTL+ + GKI + LF +++ + P+ +Y L++G
Sbjct: 123 LGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSA 182
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ M + QP +V + ++I LC + +V +A L +M+ + P + SLI
Sbjct: 183 AIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIH-QGISPSIFTYNSLI 241
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
LC + E EMV +KI
Sbjct: 242 HALCNLCEWKHVTALLNEMVNSKI 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
L +FD+M Q V ++ TL+N + G L + ME+ PD Y ++
Sbjct: 149 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 208
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R++ A+ +F EM+ + + P++ T+ +LI+ LC L +M+ + P
Sbjct: 209 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN-SKIMP 267
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +F++++ LC G++ A + M++ +E
Sbjct: 268 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 301
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y +I + + ++ + ++ ++P + + ++ L+
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK-ELIPNTVTYSTLMHGLCHVGRLQ 391
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+ +F EM + S+ LL+ + ++D L + +E + PD Y I++
Sbjct: 392 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 451
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + LE A +F + + L P + T+ +I GLC + + EA KL +M R
Sbjct: 452 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR-KGY 510
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ + + +G E + +EM+ D
Sbjct: 511 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSAD 548
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y +++ L + + DE +L ++ + + P+ I+ VI RA LE A +
Sbjct: 408 DFVSYCILLDYLCKNRRLDEAIALLKAIE-GSNMDPDIQIYTIVIDGMCRAGELEAARDL 466
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F +SS + V ++ ++N + G + + LF M+ K SP+ C+YN++ G +
Sbjct: 467 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 526
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ ++ EML R + T L+ E+ D+ L
Sbjct: 527 NNETLRGIQLLQEMLARGFSADVSTSTVLV-----EMLSDDGL 564
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YNLL + L + GRA + +L +++ + + P+ + +I+ Y + + AL+
Sbjct: 257 YNLLVHALFMD--GRAS---DAYAVLEEMQRNG-LSPDVFTYNILINGYCKEGNEKKALE 310
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCV 167
VF+EMS V+ T ++ +L+ A G++ LF++ ++K + PD YN L++
Sbjct: 311 VFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHC 370
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+E A+++ EM K+R+ P VT+ TLI G CL R+DEA L ++M + ++PD
Sbjct: 371 AGGDMERAFEIMAEMEKKRIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTK-RGIQPDL 429
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
GLC G+ A +EMV I D
Sbjct: 430 --------GLCKNGQGDDAENLMKEMVGKGITPD 455
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 108/250 (43%), Gaps = 36/250 (14%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N + Y+ +I +++ +++ + P++ + +IS + + +E A
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAA 203
Query: 108 QVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+VFDEM + V + +N L+ GK+D + M ++ V+ +YN+L+H
Sbjct: 204 KVFDEMLTQGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHA 263
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR------ 219
+ R DA+ V +EM + L P + T+ LI G C E +AL++ E+M R
Sbjct: 264 LFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRAT 323
Query: 220 -------VY---------------------NVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+Y ++PD ++ +LI CA G++ A
Sbjct: 324 AVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMA 383
Query: 252 EMVRNKIEMD 261
EM + +I D
Sbjct: 384 EMEKKRIPPD 393
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A +F ++ + +FN +L + GK R +L + M + P+A +YN ++ G
Sbjct: 100 AFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRALELLRQMPR---PNAVTYNTVIAG 156
Query: 166 CVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R++ A +V EM +R + P T+ TLI G C R+++A K+ ++M+ V
Sbjct: 157 FCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVA 216
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
P A ++ +LI G C G+L +AL ++E+MV+ + M
Sbjct: 217 PSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAM 252
>gi|3258568|gb|AAC24378.1| Unknown protein [Arabidopsis thaliana]
Length = 691
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 115/215 (53%), Gaps = 23/215 (10%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARL 102
K F + + L++ LGRA+ + + L ++ + V ++ F ++I YG A L
Sbjct: 94 KGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGL 153
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYN 160
+ ++++F M + +V +FN+LL+ +L G+ DLF M + V+PD+ ++N
Sbjct: 154 FQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFN 213
Query: 161 ILMHGCVVSRRLEDAWKVFDE----------------MLKRR--LQPTLVTFGTLIYGLC 202
L++G + +++A+++F + MLK+ + P +V++ TL+ G C
Sbjct: 214 TLINGFCKNSMVDEAFRIFKDMELAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYC 273
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++ +DEA+ + DM+ +KP+A + +LIKGL
Sbjct: 274 MKQEIDEAVLVFHDMLS-RGLKPNAVTYNTLIKGL 307
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Query: 77 LKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
LK T V P + + ++ Y + ++ A+ VF +M S ++ ++NTL+ +
Sbjct: 252 LKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAH 311
Query: 137 KIDRMTDLF---QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ D + D+ +PDAC++NIL+ + L+ A KVF EML +L P +
Sbjct: 312 RYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSAS 371
Query: 194 FGTLIYGLCLELRVDEALKL------KEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ LI LC+ D A L KE ++ KP A + + + LCA G+
Sbjct: 372 YSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGK 426
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEIIFCNVISFYGR 99
++ LKP N + Y+ +I L A +DE++ IL T P+ F +I +
Sbjct: 290 SRGLKP---NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCD 346
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------ 152
A L+ A++VF EM + + S++ L+ + + DR LF ++ EK V
Sbjct: 347 AGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDE 406
Query: 153 -SPDACSYNILMHGCVVSRRLEDAWKVFDE------------------------------ 181
P A +YN + + + + A KVF +
Sbjct: 407 CKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYE 466
Query: 182 ----MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK--PDAQVFASLIK 235
ML+R P L T+ LI GL L++ EAL + + R+ P A F S++
Sbjct: 467 LLVLMLRREFVPDLETYELLIDGL---LKIGEALLAHDTLQRMLRSSYLPVATTFHSVLA 523
Query: 236 GL 237
L
Sbjct: 524 EL 525
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ + +++ K+F M + + P+++TF +L+ L R A L ++M
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200
Query: 219 RVYNVKPDAQVFASLIKGLC 238
R Y V PD+ F +LI G C
Sbjct: 201 RTYGVTPDSYTFNTLINGFC 220
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 118/244 (48%), Gaps = 36/244 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L RA ++ EV L+ L D P+ F +I + + A Q+ + M
Sbjct: 219 YNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 277
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + ++NTL+N + G+++ T LF+ + ++ + + SYNIL++G +++
Sbjct: 278 HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 337
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------MRVYNV- 223
++A+++F+EM + L+P+ VT+ TLI LC RV A KL +M + Y V
Sbjct: 338 DEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVL 397
Query: 224 -------------------------KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
KP+ +VF+ L+ G+C G+L A +E+ +N +
Sbjct: 398 LDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL 457
Query: 259 EMDA 262
E D
Sbjct: 458 EPDT 461
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 108/214 (50%), Gaps = 4/214 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N+ Y+++I + + DE ++ +++ + P + + +I ++ +
Sbjct: 315 RGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKG-LKPSTVTYNTLIGALCQSGRVR 373
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILM 163
A ++F EM + + ++ LL+ + G ++ DLFQ ++K P+ ++IL+
Sbjct: 374 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILL 433
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + +LE+AWK FDE+ K L+P + + LI GLC + + EA+KL M
Sbjct: 434 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE-KGC 492
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
PD+ F +I+ L E+ A+ EEM RN+
Sbjct: 493 LPDSITFNVIIQNLLKENEIHEAIQLLEEM-RNR 525
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++ + A+Q+FDEM+ + K++ L+N + K L
Sbjct: 75 PDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKL 134
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ M+ D +Y +++ +A +F EM+ + P +V + +L+ GLC
Sbjct: 135 HEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRF 194
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
R+ EAL+ ++ M + D + SLI GL G F MV DA
Sbjct: 195 GRLKEALEFFKE-MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 251
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+++ PDA + L+ G + + DA ++FDEM ++ L T+G LI GLC +
Sbjct: 69 LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128
Query: 208 DEALKLKEDM---------------------------------MRVYNVKPDAQVFASLI 234
A+KL E M M + PD V++SL+
Sbjct: 129 GLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GLC G L AL F +EM I D
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISAD 215
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+AR A+++ ++M N + V ++ +++++ G D+F +++ + PD
Sbjct: 124 KARKTGLAIKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVV 182
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y+ LM G RL++A + F EM R + + T+ +LI+GL E ++
Sbjct: 183 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFL-NL 241
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLA 246
M PDA F LI GLC G++ A
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEA 270
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L Y +++ L + +E + +K T P +F ++ RA LE A + F
Sbjct: 391 LSTYCVLLDGLCKNGHLEEAIDLFQSIKK-TEHKPNIEVFSILLDGMCRAGKLEEAWKQF 449
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVS 169
DE+S ++ ++N L+N + G + L +Q+ EK PD+ ++N+++ +
Sbjct: 450 DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKE 509
Query: 170 RRLEDAWKVFDEMLKRRLQP 189
+ +A ++ +EM R P
Sbjct: 510 NEIHEAIQLLEEMRNRNFSP 529
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 3/216 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ ++ + + Y +I L ++ + QQ+ ++ D + P E +C+++S+Y R LE
Sbjct: 277 RGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEMV-DRGIQPNEYAYCSLVSYYCRVGDLE 335
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A +V+DEM + ++T S N L+ G++ ++F+ M K + D +Y+ L+
Sbjct: 336 KARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSVKGIKHDVITYDTLI 395
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +L+ A ++++ L L+PT+ TF LI +C +V A+ L ++MR +
Sbjct: 396 RGLCKVGKLDSAIQMYEWFLSSGLEPTVSTFSPLIGAMCENGQVHAAVDLI-NLMRAKGL 454
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+P +I G C + + + M+++ I+
Sbjct: 455 EPLVWSNDRIINGFCKINRSDEGMAWLAGMLKDNIK 490
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L R +M E ++ ++K + + II+ VI RL+ A Q++DEM
Sbjct: 251 YQRVIHGLFRRRMGGEALRVFREIKQRGYQI-DRIIYSTVIHGLCEMRLIGDAQQMWDEM 309
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+Q ++ +L++ G +++ ++ +++ K S NIL+ G V R+
Sbjct: 310 VDRGIQPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRV 369
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA +VF+EM + ++ ++T+ TLI GLC ++D A+++ E + ++P F+
Sbjct: 370 YDALEVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFLS-SGLEPTVSTFSP 428
Query: 233 LIKGLCAVGELSLAL 247
LI +C G++ A+
Sbjct: 429 LIGAMCENGQVHAAV 443
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 128 LLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L+ A G +++D +M +PD Y ++HG R +A +VF E+ +R
Sbjct: 219 LIGAFAADGNFGKVSDTLHLMISTGCTPDKVIYQRVIHGLFRRRMGGEALRVFREIKQRG 278
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS-- 244
Q + + T+I+GLC E+R+ + D M ++P+ + SL+ C VG+L
Sbjct: 279 YQIDRIIYSTVIHGLC-EMRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYYCRVGDLEKA 337
Query: 245 -------LALGFKEEMVRNKI 258
LA GFK+ V I
Sbjct: 338 RKVYDEMLAKGFKQTTVSCNI 358
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 36/195 (18%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F +V LH L T P+++I+ VI R R+ AL+VF E+ Q
Sbjct: 229 FGKVSDTLH-LMISTGCTPDKVIYQRVIHGLFRRRMGGEALRVFREIKQRGYQ------- 280
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
IDR+ Y+ ++HG R + DA +++DEM+ R
Sbjct: 281 -----------IDRII----------------YSTVIHGLCEMRLIGDAQQMWDEMVDRG 313
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+QP + +L+ C +++A K+ ++M+ K LIKG C G + A
Sbjct: 314 IQPNEYAYCSLVSYYCRVGDLEKARKVYDEML-AKGFKQTTVSCNILIKGFCVHGRVYDA 372
Query: 247 LGFKEEMVRNKIEMD 261
L EEM I+ D
Sbjct: 373 LEVFEEMSVKGIKHD 387
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 13/159 (8%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
++F+E+ + +KHD I + +I + L+ A+Q+++ S ++ TV +
Sbjct: 374 EVFEEMS--VKGIKHDV------ITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTVST 425
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG-CVVSRRLED-AWKVFDE 181
F+ L+ AM G++ DL +M K + P S + +++G C ++R E AW
Sbjct: 426 FSPLIGAMCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSDEGMAW--LAG 483
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
MLK ++P TF L+ L R+D+AL + M +V
Sbjct: 484 MLKDNIKPRKQTFDYLVESLSTCGRLDDALLVLNIMFKV 522
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II L + + + + ++ H + P + ++I +H + +EM
Sbjct: 211 YTSIIDSLCKDRQVTQAFNLFSEMIHQG-ISPSIFTYNSLIHALCNLCEWKHVTALLNEM 269
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ + V F+T+++A+ GK+ D+ +M ++ V P+ +YN LM G + +
Sbjct: 270 VNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEM 329
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A KVFD M+ + P +V++ TLI G C R+++A+ L E+M R + P+ +++
Sbjct: 330 DEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR-KELIPNTVTYST 388
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ GLC VG L A+ EMV
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMV 410
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A++VFD M V S++TL+N +I++ LF+ M K + P+ +Y+
Sbjct: 329 MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LMHG RL+DA +F EM+ R P V++ L+ LC R+DEA+ L + +
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLK-AIEGS 447
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD Q++ +I G+C GEL A
Sbjct: 448 NMDPDIQIYTIVIDGMCRAGELEAA 472
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNIL 162
L + +M SF + + + N L+N+ + R+ F ++ K + P+ ++N L
Sbjct: 88 LSLSHQMDSFGIPPNIYTLNILINSFC---HLQRLGFAFSVLAKILKLGHQPNIATFNTL 144
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G V ++ + +FD+M+ QP +VT+GTLI GLC A++L M + N
Sbjct: 145 IRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GN 203
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+PD V+ S+I LC +++ A EM+ I
Sbjct: 204 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGIS 240
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 5/204 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSS 115
++ + + K + V + HQ+ D+ +P I N+ I+ + + L A V ++
Sbjct: 74 LLISITKMKHYSTVLSLSHQM--DSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILK 131
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
Q + +FNTL+ + GKI + LF +++ + P+ +Y L++G
Sbjct: 132 LGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSA 191
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ M + QP +V + ++I LC + +V +A L +M+ + P + SLI
Sbjct: 192 AIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIH-QGISPSIFTYNSLI 250
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
LC + E EMV +KI
Sbjct: 251 HALCNLCEWKHVTALLNEMVNSKI 274
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 2/154 (1%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
L +FD+M Q V ++ TL+N + G L + ME+ PD Y ++
Sbjct: 158 LHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDS 217
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R++ A+ +F EM+ + + P++ T+ +LI+ LC L +M+ + P
Sbjct: 218 LCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVN-SKIMP 276
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +F++++ LC G++ A + M++ +E
Sbjct: 277 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVE 310
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F +++ Y +I + + ++ + ++ ++P + + ++ L+
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRK-ELIPNTVTYSTLMHGLCHVGRLQ 400
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+ +F EM + S+ LL+ + ++D L + +E + PD Y I++
Sbjct: 401 DAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVI 460
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + LE A +F + + L P + T+ +I GLC + + EA KL +M R
Sbjct: 461 DGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKR-KGY 519
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ + + +G E + +EM+ D
Sbjct: 520 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSAD 557
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y +++ L + + DE +L ++ + + P+ I+ VI RA LE A +
Sbjct: 417 DFVSYCILLDYLCKNRRLDEAIALLKAIE-GSNMDPDIQIYTIVIDGMCRAGELEAARDL 475
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F +SS + V ++ ++N + G + + LF M+ K SP+ C+YN++ G +
Sbjct: 476 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 535
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ ++ EML R + T L+ E+ D+ L
Sbjct: 536 NNETLRGIQLLQEMLARGFSADVSTSTVLV-----EMLSDDGL 573
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 113/207 (54%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ ++++I L R ++ +L ++ KH +P + + ++ + + + ++ A++
Sbjct: 348 SVVTFNILINFLCRKRLLGRAIDVLEKMPKHG--CMPNSLSYNPLLHGFCQEKKMDRAIE 405
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ M S + ++NTLL A+ GK D ++ Q+ K SP +YN ++ G
Sbjct: 406 YLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLT 465
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ E A ++ +EM ++ L+P ++T+ TL+ GL E +VDEA+K+ DM + ++KP A
Sbjct: 466 KVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGL-SIKPSA 524
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +++ GLC + S A+ F MV
Sbjct: 525 VTYNAIMLGLCKAQQTSRAIDFLAYMV 551
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
G+ + + +IL ++ VP+ I + +I Y ++ ++ ALQV + MS V
Sbjct: 156 GKTRKATRIMEILE----NSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPD 208
Query: 122 VKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V ++NT+L ++ GK+ + M L + M++ PD +Y IL+ + A K+ D
Sbjct: 209 VVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLD 268
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM K+ +P +VT+ LI G+C E R+DEA+K + M +Y +P+ +++ +C+
Sbjct: 269 EMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNN-MPLYGCQPNVITHNIILRSMCST 327
Query: 241 GELSLALGFKEEMVR 255
G A +M+R
Sbjct: 328 GRWMDAERLLADMLR 342
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 9/221 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL---KHDTRVVPEEIIFCNVISFYGRAR 101
K + +++ Y+++I + + DE + L+ + V+ II ++ S R
Sbjct: 273 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCS---TGR 329
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
++ A ++ +M +V +FN L+N + + R D+ + M K+ P++ SYN
Sbjct: 330 WMD-AERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYN 388
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+HG ++++ A + + M+ R P +VT+ TL+ LC + + D A+++ + +
Sbjct: 389 PLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEIL-NQLSS 447
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + ++I GL VG+ A EEM R ++ D
Sbjct: 448 KGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPD 488
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 2/153 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + E+A ++
Sbjct: 418 DIVTYNTLLTALCKDGKADAAVEILNQLSSKG-CSPVLITYNTVIDGLTKVGKTEYAAEL 476
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+EM ++ + +++TLL + GK+D +F ME + P A +YN +M G
Sbjct: 477 LEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+++ A M+++ +PT T+ LI G+
Sbjct: 537 AQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD + L+ G S + A ++ + + P ++T+ LI G C +D+AL++
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQV 199
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E M +V PD + ++++ LC G+L A+
Sbjct: 200 LERM----SVAPDVVTYNTILRSLCDSGKLKEAM 229
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI + V + LE+ K + M+ + P ++ +LI G C + +A ++ E ++
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIME-ILE 169
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + LI G C GE+ AL E M
Sbjct: 170 NSGAVPDVITYNVLIGGYCKSGEIDKALQVLERM 203
>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
Length = 820
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ R + +E +++L+++ D +VP + V++ Y R + A++VF+ M
Sbjct: 268 YAALVDLWCREQKAEEAEKMLNEM-FDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESM 326
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V ++N ++ GK+ + M L Q+ E V PD +YN+L+ G + +
Sbjct: 327 KLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHI 386
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+++ M L T+ LI LC +VDEA L D + ++P++ F +
Sbjct: 387 ESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLF-DGLEYRGIRPNSVTFNT 445
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I GLC G+ +A F E+MV D
Sbjct: 446 VINGLCKGGKFDVACTFLEKMVSAGCAPD 474
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 40/243 (16%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L R Q+ L L + P+ F ++I Y R + L+ A +FD+M
Sbjct: 132 YNALIRALCRRADLRHAQRYL-SLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKM 190
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ S+ L+ G++D +LF+ +E+ PD ++ L+ G +RR E
Sbjct: 191 PLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ---PDMYTHAALVKGLCDARRGE 247
Query: 174 -------------------------DAW----------KVFDEMLKRRLQPTLVTFGTLI 198
D W K+ +EM L P VT ++
Sbjct: 248 EGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVV 307
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C E R+ A+++ E M++ +P+ + ++++G C VG++ A+ ++M +
Sbjct: 308 NAYCREGRMSGAVRVFES-MKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGV 366
Query: 259 EMD 261
E D
Sbjct: 367 EPD 369
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 21/158 (13%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
F ++++ + R L L++F M T ++N L+ A+ C + D +
Sbjct: 96 FRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRAL--CRRAD-----LRHA 148
Query: 149 EKYVS--------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
++Y+S PDA ++N L+ G +++L+ A +FD+M R V++ LI G
Sbjct: 149 QRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEG 208
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
C RVDEAL+L ++ +PD A+L+KGLC
Sbjct: 209 FCETGRVDEALELFRELE-----QPDMYTHAALVKGLC 241
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
PL+ F + + Y +I DE ++ +L+ P+ ++ AR
Sbjct: 191 PLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ-----PDMYTHAALVKGLCDARR 245
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
E L + +M + +++ L++ K + + ++ + + P A +
Sbjct: 246 GEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTA 305
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ R+ A +VF+ M + +P + T+ ++ G C +V +A+ L D MR
Sbjct: 306 VVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALL-DQMREC 364
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+PD + LI+G C G + A M N + D
Sbjct: 365 GVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAAD 404
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNI 161
++ A +FD + ++ +FNT++N + GK D T L +++ +PD +Y+
Sbjct: 421 VDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSP 480
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+ ++ + DEML++ ++P+ V + +I L E A ++ M+ +
Sbjct: 481 FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSL- 539
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + + ++ C G L A EM + I +DA
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDA 580
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 6/183 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++T R + + ++ + H P + +I R L HA + M
Sbjct: 99 LLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRS 158
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDA 175
+ +FN+L+ ++D DLF M + S DA SY L+ G + R+++A
Sbjct: 159 GWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEA 218
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++F E+ QP + T L+ GLC R +E L + + M + +P + +A+L+
Sbjct: 219 LELFREL----EQPDMYTHAALVKGLCDARRGEEGLYMLQKMKEL-GWRPATRAYAALVD 273
Query: 236 GLC 238
C
Sbjct: 274 LWC 276
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + DE + L++ + P + F VI+ + + A ++M
Sbjct: 408 YNVLIDALCKTGKVDEACSLFDGLEYRG-IRPNSVTFNTVINGLCKGGKFDVACTFLEKM 466
Query: 114 SSFNVQRTVKSFNTLL-NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
S +++ + N T G + ++ + ++++K V P +Y I++ R
Sbjct: 467 VSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNY 526
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A +++ +M+ P +VT+ T + C E R+ EA + +M + + DA + +
Sbjct: 527 GLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKG-GIIVDAMAYNT 585
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G ++G+ A+ + M
Sbjct: 586 LIDGHTSIGKTDHAVTILKHMT 607
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 103/190 (54%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I+ RA D+ +Q+L ++ + P+ + + +++S +A ++ A +V
Sbjct: 410 DIYTYNIMISGACRANRIDDARQLLERMT-EAGCPPDVVTYNSIVSGLCKASQVDEAYEV 468
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
++ + + V + +TL++ + ++D L + ME+ S PD +Y IL+HG
Sbjct: 469 YEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCK 528
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +L+ + F EML + PT++T+ +I LC RV + L + M+ V PDA
Sbjct: 529 ADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE-RGVTPDAI 587
Query: 229 VFASLIKGLC 238
V+ S+I GLC
Sbjct: 588 VYTSVIDGLC 597
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 1/175 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I+ + +AR + A ++ DEM + +NT++ + G++D
Sbjct: 165 PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 224
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
++ M++ +P +Y IL+ S R+ DA + ++M++ P +VT+ TLI G C
Sbjct: 225 YRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL 284
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+DEA+ L M+ + PD + LI G C +EMV+ E
Sbjct: 285 GNMDEAVVLFNQMLE-NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 338
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 4/194 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II L D ++H P I + ++ ++ + A + ++M
Sbjct: 205 YNTIIKGLCDNGRVDSA--LVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDM 262
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V ++NTL+N G +D LF Q++E SPD +YNIL+ G R
Sbjct: 263 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 322
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+D K+ EM+K +P +T+ TL+ L + +A L + M+R + KP F
Sbjct: 323 QDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLR-RDCKPSHFTFNL 381
Query: 233 LIKGLCAVGELSLA 246
+I C VG+L LA
Sbjct: 382 MIDMFCKVGQLDLA 395
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 38/243 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + DE + +Q+ ++ P+ + +I Y + + ++
Sbjct: 270 NVVTYNTLINGFCKLGNMDEAVVLFNQMLENS-CSPDVFTYNILIDGYCKQERPQDGAKL 328
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-------------------------------- 137
EM + + ++NTL+++++ GK
Sbjct: 329 LQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCK 388
Query: 138 ---IDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+D +LFQ+M ++ PD +YNI++ G + R++DA ++ + M + P +VT
Sbjct: 389 VGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVT 448
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +++ GLC +VDEA ++ E ++R D ++LI GLC L A EM
Sbjct: 449 YNSIVSGLCKASQVDEAYEVYE-VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507
Query: 254 VRN 256
RN
Sbjct: 508 ERN 510
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVK-SFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYN 160
L+ A++ FD + + K + N LL+A + K DLF+ SPD+ +Y+
Sbjct: 112 LDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYS 171
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L++G +R + A+++ DEM KR + P + T+I GLC RVD AL DM R
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR- 230
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
N P + L+ LC +S A E+M+
Sbjct: 231 -NCAPSVITYTILVDALCKSARISDASLILEDMI 263
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 94/182 (51%), Gaps = 3/182 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I L +++ D+ +++L +++ + P+ + + +I + +A L+ +L F EM
Sbjct: 487 LIDGLCKSRRLDDAEKLLREMERNGSA-PDVVAYTILIHGFCKADQLDKSLAFFSEMLDK 545
Query: 117 NVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
TV +++ +++ + ++ D L ++E+ V+PDA Y ++ G S ++A
Sbjct: 546 GCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++++ M + PT+VT+ L+ LC R+DEA+ L E +M PD + S+
Sbjct: 606 YELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLE-VMESDGCLPDTVTYNSVFD 664
Query: 236 GL 237
G
Sbjct: 665 GF 666
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I KL ++ + +L + + V P+ I++ +VI ++ + A ++
Sbjct: 550 TVITYSIVIDKLCKSARVRDGCMLLKTM-LERGVTPDAIVYTSVIDGLCKSDSYDEAYEL 608
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+ M TV ++N L++ + ++D L ++ME PD +YN + G
Sbjct: 609 YKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWK 668
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YNVKPD 226
S + A+++F M R PT + L+ L E ++D+A+++ E+ + +V P+
Sbjct: 669 SAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPE 727
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ V ++ ++A+ +F P +T+ TLI G C +A +L ++M +
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ P V+ ++IKGLC G + AL +M RN
Sbjct: 196 -RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN 231
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 158 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLIN 217
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 218 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLS-QSLL 276
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 277 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 313
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + D+ ++ ++ ++P + F +I + + ++ A++++ M
Sbjct: 212 YSVLINGLCKESKMDDANELFDEMLVKG-LIPNGVTFTTLIDGHCKNGRVDFAMEIYKRM 270
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
S ++ + ++NTL+ + G + + DL M K + PD +Y L+ GC L
Sbjct: 271 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 330
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A++ M++ ++ V + LI GLC E R +A K+ +M+ V +KPD +
Sbjct: 331 DTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSV-GLKPDTGTYTM 389
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+I C G++ +EM RN
Sbjct: 390 IINEFCKKGDVWKGSKLLKEMQRN 413
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 88/162 (54%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V+P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 203 SGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDF 262
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++ ++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 263 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 322
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D +A+LI GLC G
Sbjct: 323 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYAALISGLCQEG 363
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 12/225 (5%)
Query: 40 EAQPLKPFRYNLLHYDLI-ITKLGRAKM-FDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
P F +N+L + + +G A++ FDE+ K R P + F +IS
Sbjct: 136 SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIP------KRGLR--PTVVSFNTLISGC 187
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDA 156
+A +E ++ M S V V +F+ L+N + G++D + LF ++ K + P+
Sbjct: 188 CKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNG 247
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
++ +L+ G +++ A K F ML + ++P LVT+ LI GLC + EA +L +
Sbjct: 248 VTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNE 307
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M ++PD F +LI G C G++ AL K MV IE+D
Sbjct: 308 M-SASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELD 351
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 7/215 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + R ++ ++ +I+ +A +E + L + RV P+ F +I+ +
Sbjct: 169 PKRGLRPTVVSFNTLISGCCKAGAVEEGFR-LKGVMESERVCPDVFTFSALINGLCKEGR 227
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L+ +FDEM + +F L++ GK+D FQ+M + V PD +YN
Sbjct: 228 LDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 287
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G L++A ++ +EM L+P +TF TLI G C ++ AL++K M+
Sbjct: 288 LINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVE-E 346
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ D F LI GLC G + A E M+R+
Sbjct: 347 GIELDDVAFTVLISGLCRDGRVHDA----ERMLRD 377
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
++++ P+ +N+LMHG + A VFDE+ KR L+PT+V+F TLI G C
Sbjct: 131 LEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKA 190
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
V+E +LK +M V PD F++LI GLC G L
Sbjct: 191 GAVEEGFRLK-GVMESERVCPDVFTFSALINGLCKEGRL 228
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 93/197 (47%), Gaps = 6/197 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
AQ ++P +L+ Y+ +I L + E +++++++ + + P+ I F +I +
Sbjct: 275 AQGVRP---DLVTYNALINGLCKVGDLKEARRLVNEMSA-SGLRPDRITFTTLIDGCCKY 330
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSY 159
+E AL++ M ++ +F L++ + G++ D L ++ PD +Y
Sbjct: 331 GDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTY 390
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ + +K+ EM P +VT+ L+ GLC + +V A L + M+
Sbjct: 391 TMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLN 450
Query: 220 VYNVKPDAQVFASLIKG 236
V V P+ + L++G
Sbjct: 451 V-GVAPNDITYNILLEG 466
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + FD+ + + D P+ + F +I Y RA+ ++ +Q+ E+
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + ++NTL++ ++ DLFQ M + V PD + NIL++G + +L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A ++F+ + ++ V + +I+G+C +VDEA L + ++ V+PD Q +
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 577
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I G C +S A +M N E D
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
CN VI + R + A+ ++ +M + + SFN L+ C K+ F +
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAW---------------KVFDEMLKRRLQPTLVT 193
K PD ++N L+HG + R+ +A +FD+M++ L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI GLCLE RV EA L M+ + D + +++ G+C +G+ AL +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVG-KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287
Query: 254 VRNKIEMD 261
I+ D
Sbjct: 288 EETHIKPD 295
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K +++ Y I+ G KM D + L +T + P+ +I+ +I +
Sbjct: 255 KGLHIDVVTYGTIVN--GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 312
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +F EM + V ++N +++ + G+ L + M E+ ++PD ++N L
Sbjct: 313 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 372
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ V +L +A K+ DEML R + P VT+ ++IYG C R D+A K D+M
Sbjct: 373 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA-KHMFDLM---- 427
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD F ++I C + + E+ R
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 78 KHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K + R +P I N+ I + L +L F +++ Q V +FNTLL+ +
Sbjct: 131 KMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLED 190
Query: 137 KIDRMTDLF----------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+I LF Q++E ++P ++N L++G + R+ +A + +
Sbjct: 191 RISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVN 250
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M+ + L +VT+GT++ G+C AL L M + +KPD +++++I LC
Sbjct: 251 KMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH-IKPDVVIYSAIIDRLCKD 309
Query: 241 GELSLALGFKEEMVRNKI 258
G S A EM+ I
Sbjct: 310 GHHSDAQYLFSEMLEKGI 327
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI + K+F E +++ ++ H + P+ + + ++I + + + A +FD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
+V +FNT+++ ++D M L +I + + + +YN L+HG L
Sbjct: 430 PDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544
Query: 235 KGLC 238
G+C
Sbjct: 545 HGMC 548
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A+ FD M T N ++ + + D L++ ME + + + S+NI
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------ 215
L+ +L + F ++ K QP +VTF TL++GLCLE R+ EAL L
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
Query: 216 --------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D M + P F +LI GLC G + A +MV + +D
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N Y+ +I + Q + ++ + V + I CN++ YG LE AL
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMI--SHGVCPDTITCNIL-LYGFCENEKLEEAL 522
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+ + + ++N +++ M K+D DLF + + V PD +YN+++ G
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ DA +F +M +P T+ TLI G +D++++L +M
Sbjct: 583 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633
>gi|115443739|ref|NP_001045649.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535180|dbj|BAF07563.1| Os02g0110400 [Oryza sativa Japonica Group]
gi|215706484|dbj|BAG93340.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222622028|gb|EEE56160.1| hypothetical protein OsJ_05062 [Oryza sativa Japonica Group]
Length = 747
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%)
Query: 52 LHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L Y+ ++ + GR M ++I + + D V P+ + +I +G + +E AL+
Sbjct: 208 LSYNAVLKAILCRGREAM---ARRIYNAMIADA-VTPDLSTYNTLIWGFGLCKKMEAALR 263
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
VF +M V V ++NTLLNA + G ++ +F M + ++ SYN+++ G V
Sbjct: 264 VFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYV 323
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKPD 226
+ ++E+A +F EM ++ L+ + TF L+ GLC E RV EA K +DM D
Sbjct: 324 EAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKD 383
Query: 227 AQVFASLIKGLCAVGELSLAL 247
VF L+ LC G+L AL
Sbjct: 384 KSVFLRLVTTLCRAGDLDGAL 404
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 98/201 (48%), Gaps = 2/201 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+I L +M + + IL + PEE +I+ YG+A + + ++++F M
Sbjct: 139 FSLLIPILASHRMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLM 198
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ RT S+N +L A+L G+ ++ M V+PD +YN L+ G + +++
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKM 258
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A +VF +M + P + T+ TL+ ++ A K+ ++M ++ +
Sbjct: 259 EAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGA-GFAQNSVSYNV 317
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+IKG G++ A+G EM
Sbjct: 318 MIKGYVEAGKVEEAVGLFSEM 338
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I G K + ++ +K D V P+ + +++ + RA LE A +V
Sbjct: 241 DLSTYNTLIWGFGLCKKMEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESARKV 299
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CV 167
FDEM + S+N ++ + GK++ LF M EK + ++ LM G C
Sbjct: 300 FDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCD 359
Query: 168 VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R+ +A K D+M +RRL P F L+ LC +D AL + + + +V D
Sbjct: 360 DEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVD 419
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + L++ LCA G+ A+ +E++
Sbjct: 420 PRQYGVLMESLCAGGKCDGAVEVMDELL 447
>gi|218189906|gb|EEC72333.1| hypothetical protein OsI_05540 [Oryza sativa Indica Group]
Length = 747
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 9/201 (4%)
Query: 52 LHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L Y+ ++ + GR M ++I + + D V P+ + +I +G + +E AL+
Sbjct: 208 LSYNAVLKAILCRGREAM---ARRIYNAMIADA-VTPDLSTYNTLIWGFGLCKKMEAALR 263
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
VF +M V V ++NTLLNA + G ++ +F M + ++ SYN+++ G V
Sbjct: 264 VFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYV 323
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKPD 226
+ ++E+A +F EM ++ L+ + TF L+ GLC E RV EA K +DM D
Sbjct: 324 EAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKD 383
Query: 227 AQVFASLIKGLCAVGELSLAL 247
VF L+ LC G+L AL
Sbjct: 384 KSVFLRLVTTLCRAGDLDGAL 404
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 97/201 (48%), Gaps = 2/201 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+I L M + + IL + PEE +I+ YG+A + + ++++F M
Sbjct: 139 FSLLIPILASHSMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLM 198
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ RT S+N +L A+L G+ ++ M V+PD +YN L+ G + +++
Sbjct: 199 PDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKM 258
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A +VF +M + P + T+ TL+ ++ A K+ ++M ++ +
Sbjct: 259 EAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGA-GFAQNSVSYNV 317
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+IKG G++ A+G EM
Sbjct: 318 MIKGYVEAGKVEEAVGLFSEM 338
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 4/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I G K + ++ +K D V P+ + +++ + RA LE A +V
Sbjct: 241 DLSTYNTLIWGFGLCKKMEAALRVFGDMK-DHGVTPDVTTYNTLLNAWVRAGDLESARKV 299
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CV 167
FDEM + S+N ++ + GK++ LF M EK + ++ LM G C
Sbjct: 300 FDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCD 359
Query: 168 VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R+ +A K D+M +RRL P F L+ LC +D AL + + + +V D
Sbjct: 360 DEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVD 419
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + L++ LCA G+ A+ +E++
Sbjct: 420 PRQYGVLMESLCAGGKCDGAVEVMDELL 447
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 42/241 (17%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS- 115
+I ++ F + Q+L ++K + RV+ E IF + G+A L A+ F M++
Sbjct: 95 LIENYATSREFHFIHQVLDRMKREGRVL-TETIFILIFKACGKAHLPGEAVNFFHRMAND 153
Query: 116 FNVQRTVKSFNTLLN--------------------------------------AMLTCGK 137
+ ++TVKSFN++LN A+ G+
Sbjct: 154 LHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ 213
Query: 138 IDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
IDR D F+ M K +PD +Y+ LM+G RR+++A + DEM P VTF
Sbjct: 214 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 273
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
LI L + A KL ++M + P+ + +LI GLC G+L AL E+MV +
Sbjct: 274 LIDALSKNGDLSRAAKLVDNMF-LKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 332
Query: 257 K 257
K
Sbjct: 333 K 333
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F+ NLL Y+LII L + D ++ P+ + +++ + R ++
Sbjct: 192 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN-CNPDVFTYSTLMNGLCKERRVD 250
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A+ + DEM + +FN L++A+ G + R L M K P+ +YN L+
Sbjct: 251 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 310
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + +L+ A + ++M+ + P VT+GT+I GL + R ++ + + M
Sbjct: 311 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEE-RGQ 369
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
K + +++SLI GL G+ A+ +EM
Sbjct: 370 KANEYIYSSLISGLFKEGKSENAVRLWKEMA 400
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
PLK ++ Y ++ L + + DE +L +++ + +P + F +I +
Sbjct: 225 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-CLPNPVTFNVLIDALSKNGD 283
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACS 158
L A ++ D M ++NTL++ + GK+D+ L +EK VS P+ +
Sbjct: 284 LSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL---LEKMVSSKCVPNQVT 340
Query: 159 YNILMHGCVVSRRLED-----------------------------------AWKVFDEML 183
Y +++G V RR ED A +++ EM
Sbjct: 341 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 400
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++ +P +V +G I GLC + + DEA + ++M+ P+A ++SL+KG G+
Sbjct: 401 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS-KGFLPNAFTYSSLMKGFFKKGDS 459
Query: 244 SLALGFKEEMV 254
A+ +EM+
Sbjct: 460 QKAILVWKEMM 470
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y II L + + ++ IL ++ + E I+ ++IS + E+A+++
Sbjct: 337 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKA-NEYIYSSLISGLFKEGKSENAVRL 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG--- 165
+ EM+ + V + ++ + K D D+ Q ++ K P+A +Y+ LM G
Sbjct: 396 WKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFK 455
Query: 166 -------------------------CVV-------SRRLEDAWKVFDEMLKRRLQPTLVT 193
C V S RL +A V+ ML L+P +V
Sbjct: 456 KGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVA 515
Query: 194 FGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ ++I GLC VD+ LKL +M + +PD + L LC L+ A+
Sbjct: 516 YSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNS 575
Query: 253 MVRNKIEMDA 262
M+ + D+
Sbjct: 576 MLDEGCDPDS 585
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y II L + + D+ ++ H V P + +++ + + L A++
Sbjct: 232 NVVTYSSIIAALCKGQAMDKAMEV-HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M S V+ V ++++ ++ + G+ +F M ++ + PD +Y+ L+HG +
Sbjct: 291 LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAI 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L + +FD M++ +QP F TLIY + +VDEA+ L MR +KP+
Sbjct: 351 EGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAM-LVFSKMRHQGLKPNCV 409
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +LI G C + + AL +EMV N +
Sbjct: 410 TYNTLINGYCKITRMENALALFQEMVSNGVS 440
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ SY+ + G + + A+ + EML RR+ P +VT+ ++I LC +D+A+++
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEV 255
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ M++ V P+ + SL+ G C+ G+L+ A+ F E+M N +E
Sbjct: 256 HDRMVK-NGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVE 300
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 8/222 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARL 102
K FR + ++ ++ L K D+ I+ + + VP +F + I G
Sbjct: 119 KGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPN--VFSHTIILKGLCHENR 176
Query: 103 LEHALQVFDEMS--SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
+ AL++ M+ V S++T+ + +L G D+ + +++++ + P+ +Y
Sbjct: 177 SQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTY 236
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ ++ + ++ A +V D M+K + P T+ +L++G C ++ EA+K E M
Sbjct: 237 SSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCS 296
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ ++S + LC G + A MV+ ++ D
Sbjct: 297 -NGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPD 337
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 99 RARL----LEHALQVFDEMSSFNVQRTVKSFNTLL------NAMLTCGKIDRMTDLFQIM 148
RAR+ E AL VFDE+ + ++S N L N + +RM M
Sbjct: 26 RARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASM 85
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
V+P +Y IL+ C + RL+ + ++K+ + + F L+ GLC + R D
Sbjct: 86 ---VTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTD 142
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+A+ + M P+ ++KGLC
Sbjct: 143 DAMDIVLRGMTELGCVPNVFSHTIILKGLC 172
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y + L + E ++I + + + P+ + +++ Y L +
Sbjct: 302 NVVTYSSFMDYLCKNGRCTEARKIFYSMVKRG-LKPDITTYSSLLHGYAIEGALVEMHGL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M ++Q FNTL+ A GK+D +F M + + P+ +YN L++G
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCK 420
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
R+E+A +F EM+ + P +T+ ++ GL
Sbjct: 421 ITRMENALALFQEMVSNGVSPNFITYNIMLQGL 453
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ +F +I + ++ A+ VF +M ++ ++NTL+N +++ L
Sbjct: 371 PDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALAL 430
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
FQ M VSP+ +YNI++ G + R A + + +++K
Sbjct: 431 FQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIK 471
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 120/255 (47%), Gaps = 15/255 (5%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
RL + LR Q DP+ AL++ + A + F + Y+ I+ KLG A FD +
Sbjct: 58 RLLAALREQSDPEAALRMLNS---------ALAREDFAPSSAVYEEIVQKLGTAGAFDLM 108
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ-VFDEM--SSFNVQRTVKSFNT 127
+ ++ +++ + V ++ + + Y R R + A+ V +++ +F VQ FN
Sbjct: 109 EGLVREMRREGHQV-RAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNH 167
Query: 128 LLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LLN ++ K+ + ++ M + + PD + N L+ + ++ A + +EM
Sbjct: 168 LLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P TF TL+ G E ++ AL++K MM P LI G C +G + A
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEA-GCSPTGVTVNVLINGYCKMGRVEDA 286
Query: 247 LGFKEEMVRNKIEMD 261
LG+ ++ + + E D
Sbjct: 287 LGYIQQEIADGFEPD 301
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I L + DE + I++Q+ D +P+ F +I LE AL +
Sbjct: 336 DVFTYNTVINCLSKNGELDEAKGIVNQMV-DRGCLPDTTTFNTLIVALSSQNRLEEALDL 394
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM-HGCV 167
E++ + V +FN L+NA+ G LF+ M+ +PD +YNIL+ H C
Sbjct: 395 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCS 454
Query: 168 VSR----------------------------------RLEDAWKVFDEMLKRRLQPTLVT 193
+ + R+E+A +VFD+M + + + VT
Sbjct: 455 MGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVT 514
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI GLC R+D+A +L E M++ ++P+ + S++ C G + A E M
Sbjct: 515 FNTLIDGLCKAKRIDDATELIEQMVK-EGLQPNNITYNSILTHYCKQGNIKKAADILETM 573
Query: 254 VRNKIEMD 261
N E+D
Sbjct: 574 TANGFEID 581
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 23/240 (9%)
Query: 21 DPKLALQLF---KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
DP L ++LF K+ P+ + Y+++I L +L+++
Sbjct: 422 DPHLGIRLFEEMKSSGCTPDE-------------VTYNILIDHLCSMGKLGNALDLLNEM 468
Query: 78 KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
+ + P + N +I + +E A +VFD+M + + R+ +FNTL++ +
Sbjct: 469 ESNG--CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAK 526
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYN-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ID T+L Q++++ + P+ +YN IL H C ++ A + + M + +VT+
Sbjct: 527 RIDDATELIEQMVKEGLQPNNITYNSILTHYCKQG-NIKKAADILETMTANGFEIDVVTY 585
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
GTLI GLC R ALKL MR+ ++P + + +I+ L L AL EM
Sbjct: 586 GTLINGLCKAGRTQVALKLLRG-MRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMT 644
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + +I RA + A+ + +EMSS V +F TL+ + G I+
Sbjct: 193 IQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAAL 252
Query: 143 DL-FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ ++ME SP + N+L++G R+EDA + + +P VT+ T ++GL
Sbjct: 253 RVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL 312
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C V ALK+ D+M PD + ++I L GEL A G +MV
Sbjct: 313 CQNGHVSHALKVM-DLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 41/253 (16%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N + ++P +++ + +I L RA +L ++ V P+E F ++
Sbjct: 186 NEMTGRGIQP---DVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG-VAPDETTFTTLMQG 241
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPD 155
+ +E AL+V +M T + N L+N G++ D + + Q + PD
Sbjct: 242 FIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPD 301
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFD----------------------------------- 180
+YN +HG + + A KV D
Sbjct: 302 QVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVN 361
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M+ R P TF TLI L + R++EAL L ++ V + PD F LI LC V
Sbjct: 362 QMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELT-VKGLSPDVYTFNILINALCKV 420
Query: 241 GELSLALGFKEEM 253
G+ L + EEM
Sbjct: 421 GDPHLGIRLFEEM 433
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 41/227 (18%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+V ++ Q HD P+ + VI+ + L+ A + ++M +FNTL
Sbjct: 323 KVMDLMLQEGHD----PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTL 378
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH---------------------GC 166
+ A+ + +++ DL ++ K +SPD ++NIL++ GC
Sbjct: 379 IVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGC 438
Query: 167 VVSR--------------RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+L +A + +EM + VT+ T+I LC ++R++EA +
Sbjct: 439 TPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEE 498
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ D M + A F +LI GLC + A E+MV+ ++
Sbjct: 499 VF-DQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQ 544
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 100/188 (53%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV I Q++ + P+ + + +I YG+AR E AL VF+EM V+ T KS+N
Sbjct: 296 YKEVSNIYDQMQR-AGLKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYN 354
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G ++ +F+ M ++ V PD CSY ++ V + + A K F + +
Sbjct: 355 ILLDAFAISGLVEEANTVFRAMRRHRVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKED 414
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+P +V +GTL+ G +++ +++ E MR+ V+P+ ++ +++ +
Sbjct: 415 GLKPNVVVYGTLMKGYSKLNNLEKVMRVYE-RMRIQGVEPNQTIYTTIMDAQGRNSDFGN 473
Query: 246 ALGFKEEM 253
A+ + +EM
Sbjct: 474 AVIWFKEM 481
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQVFD 111
Y +I+ L + E + I L ++ R P++ +F +I Y +A A ++F
Sbjct: 213 YQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYAQARKLFA 272
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+MS + + +FN+L++ ++ + D Q+ + PD SY++L+ +RR
Sbjct: 273 QMSERGIPLSTVTFNSLMSFETEYKEVSNIYD--QMQRAGLKPDVVSYSLLIKAYGKARR 330
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E+A VF+EML ++PT ++ L+ + V+EA + MR + V+PD +
Sbjct: 331 EEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFR-AMRRHRVEPDLCSYT 389
Query: 232 SLIKGLCAVGELSLALGF 249
+++ E++ A F
Sbjct: 390 TMVLAYVNASEMNGAEKF 407
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + +++T G+ F +++L + + P I ++ YGR + A
Sbjct: 136 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYM-NKKGYQPSVISQTGLMEAYGRGKQYRKA 194
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVS--PDACSYNIL 162
VF M + Q + ++ +L +++ K +F+ + EK S PD ++++
Sbjct: 195 EAVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMM 254
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + A K+F +M +R + + VTF +L + E E + + M R
Sbjct: 255 IYMYKKAGDYAQARKLFAQMSERGIPLSTVTFNSL---MSFETEYKEVSNIYDQMQRA-G 310
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KPD ++ LIK AL EEM+
Sbjct: 311 LKPDVVSYSLLIKAYGKARREEEALAVFEEML 342
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A FDE H+++ + P+ ++ N+I+F G+A L+ A+
Sbjct: 293 RPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREG-CRPDTVVINNMINFLGKAGRLDDAV 351
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
++F+EM + +V ++NT++ A+ +I ++ F+ M+ +SP +Y+IL+ G
Sbjct: 352 KLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDG 411
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R E A + +EM ++ P + +LI L R D A +L +++
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCG-SS 470
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
A+V+A +IK L G L A+ +EM
Sbjct: 471 SARVYAVMIKHLGKAGRLDDAVNLFDEM 498
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 95/188 (50%), Gaps = 3/188 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 440 YCSLIDALGKAKRYDIAHELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVNLFDEM 498
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V ++N L++ + G +D +T + ++ E PD SYNI+++G +
Sbjct: 499 NKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGP 558
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++ M + ++P V++ T++ + +EA KL ++ M V + D ++S
Sbjct: 559 HRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKE-MNVLGFEYDLITYSS 617
Query: 233 LIKGLCAV 240
+++ + V
Sbjct: 618 ILEAIGKV 625
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 106/220 (48%), Gaps = 5/220 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + ++ Y +I L + + E+ +++ ++ + V + ++I G A+++
Sbjct: 113 RNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMIS 172
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNIL 162
A+ +F ++ Q T +++N+++ ++ G+ +++ +L+ M E + PD +Y+ L
Sbjct: 173 KAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSAL 232
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMRVY 221
+ R + A ++ +EM +QPT + T++ L +L V AL L E+M Y
Sbjct: 233 ISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIY-TMLIALFFKLNNVHGALGLFEEMRHQY 291
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD + LI+GL G A F EM R D
Sbjct: 292 -CRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPD 330
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 107/234 (45%), Gaps = 15/234 (6%)
Query: 8 SPFRLASLLRLQKDPKL---ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
+P L+ ++R+ + K+ A+ +F AQ Y+ +I L
Sbjct: 154 TPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQA----------YNSMIIMLMHE 203
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+++V ++ +++ ++ P+ + + +IS + + + A+++ +EM +Q T K
Sbjct: 204 GQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKI 263
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ L+ + LF+ M +Y PD +Y L+ G + R ++A+ F EM
Sbjct: 264 YTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMR 323
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +P V +I L R+D+A+KL E+M + + P + ++IK L
Sbjct: 324 REGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCI-PSVVTYNTIIKAL 376
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK----YVSPDACSYNILMHGCVVSRRL 172
N + ++ L+ + + M + Q M + V+P S I M G ++ +
Sbjct: 114 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGN--AKMI 171
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A +F ++ R+ QPT + ++I L E + ++ +L +M + PD +++
Sbjct: 172 SKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSA 231
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C +G A+ EM N ++ A
Sbjct: 232 LISAFCKLGRQDSAIRLLNEMKDNGMQPTA 261
>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 395
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K ++ + Y+ II+ L ++KM DE + +QL + P + ++ + +E
Sbjct: 133 KGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEG-FSPTPCTYGPLLDGLLKDGNIE 191
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +FDEM + +N LLN G +++ +LF+ M E+ ++PD SY +++
Sbjct: 192 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVI 251
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
RL D F ++ L+P L+T+ LI+GL R++EAL L DM + +
Sbjct: 252 DTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKK-GI 310
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + SLI L G+ + A EE++
Sbjct: 311 APNLYTYNSLILYLGKAGKAAEAGKMYEELL 341
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + D +++ ++K P+E + ++ G++ +E L++ +EM
Sbjct: 72 YNALICGLVDEDLIDIAEELFSEMKR-LGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEM 130
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + T ++NT+++ ++ +D +L+ Q+M + SP C+Y L+ G + +
Sbjct: 131 HNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNI 190
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA +FDEML+ +P + L+ G + ++ +L E M+ + PD + +
Sbjct: 191 EDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVE-QGMNPDIKSYTV 249
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I LCA G L+ L + +++ +E D
Sbjct: 250 VIDTLCADGRLNDGLSYFKQLTDMGLEPD 278
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A ++ + + V S+N L+ ++ ID +LF M++ PD +Y++++
Sbjct: 53 AHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILD 112
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
S R+ED K+ +EM + + T VT+ T+I GL +DEA+ L +M
Sbjct: 113 AMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE-GFS 171
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
P + L+ GL G + A +EM+ E
Sbjct: 172 PTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCE 206
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L ++ QL D + P+ I + +I G++ LE AL ++++M
Sbjct: 247 YTVVIDTLCADGRLNDGLSYFKQLT-DMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 305
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + ++N+L+ + GK ++ +++ K P+ +YN L+ G VS
Sbjct: 306 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSP 365
Query: 173 EDAWKVFDEMLKRRLQPTLVTF 194
E+A+ + M+ +P T+
Sbjct: 366 ENAFAAYGRMIVGGCRPNSSTY 387
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 110/211 (52%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++++I L R + IL ++ P + + ++ + + + ++ A++
Sbjct: 186 SVVTFNILINFLCRQGLLGRAIDILEKMPMHG-CTPNSLSYNPLLHGFCKEKKMDRAIEY 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + ++NTLL A+ GK+D ++ Q+ K SP +YN ++ G
Sbjct: 245 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ E A K+ DEM ++ L+P ++T+ +L+ GL E +VDEA+K D+ + ++P+A
Sbjct: 305 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL-GIRPNAI 363
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ S++ GLC + A+ F M+ + +
Sbjct: 364 TYNSIMLGLCKSRQTDRAIDFLAYMISKRCK 394
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHAL 107
+++ Y+++I + + DE + L+ + + +I N+I S R ++ A
Sbjct: 116 DVVTYNVLINGICKEGRLDEAIKFLNNMP--SYGCQPNVITHNIILRSMCSTGRWMD-AE 172
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++ +M +V +FN L+N + G + R D+ + M + +P++ SYN L+HG
Sbjct: 173 KLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGF 232
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++++ A + D M+ R P +VT+ TL+ LC + +VD A+++ + + P
Sbjct: 233 CKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL-NQLSSKGCSPV 291
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I GL VG+ A+ +EM R ++ D
Sbjct: 292 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 326
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + D +IL+QL P I + VI + E A+++
Sbjct: 256 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKG-CSPVLITYNTVIDGLSKVGKTERAIKL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM ++ + ++++L++ + GK+D F +E + P+A +YN +M G
Sbjct: 315 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 374
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SR+ + A M+ +R +PT T+ LI G+ E EAL L
Sbjct: 375 SRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDL 419
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMS--SFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+P IIF +IS + + L +S SF VQ T K G+ ++
Sbjct: 53 IPIFIIFALIISVVSICCINQQTLFPCFSLSGFSFYVQTTCKESGV--------GQAMKL 104
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D ++ K PD +YN+L++G RL++A K + M QP ++T ++ +
Sbjct: 105 LD--EMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 162
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C R +A KL DM+R P F LI LC G L A+ E+M
Sbjct: 163 CSTGRWMDAEKLLSDMLR-KGCSPSVVTFNILINFLCRQGLLGRAIDILEKM 213
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + FD+ + + D P+ + F +I Y RA+ ++ +Q+ E+
Sbjct: 188 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 242
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + ++NTL++ ++ DLFQ M + V PD + NIL++G + +L
Sbjct: 243 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 302
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A ++F+ + ++ V + +I+G+C +VDEA L + ++ V+PD Q +
Sbjct: 303 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 361
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I G C +S A +M N E D
Sbjct: 362 MISGFCGKSAISDANVLFHKMKDNGHEPD 390
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K +++ Y I+ G KM D + L +T + P+ +I+ +I +
Sbjct: 39 KGLHIDVVTYGTIVN--GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 96
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +F EM + V ++N +++ + G+ L + M E+ ++PD ++N L
Sbjct: 97 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 156
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ V +L +A K+ DEML R + P VT+ ++IYG C R D+A K D+M
Sbjct: 157 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA-KHMFDLM---- 211
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD F ++I C + + E+ R
Sbjct: 212 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 244
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI + K+F E +++ ++ H + P+ + + ++I + + + A +FD M+S
Sbjct: 156 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 213
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
+V +FNT+++ ++D M L +I + + + +YN L+HG L
Sbjct: 214 PDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 269
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 270 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 328
Query: 235 KGLC 238
G+C
Sbjct: 329 HGMC 332
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N Y+ +I + Q + ++ + V + I CN++ YG LE AL
Sbjct: 250 NTTTYNTLIHGFCEVDNLNAAQDLFQEMI--SHGVCPDTITCNIL-LYGFCENEKLEEAL 306
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+ + + ++N +++ M K+D DLF + + V PD +YN+++ G
Sbjct: 307 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 366
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ DA +F +M +P T+ TLI G +D++++L +M
Sbjct: 367 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 417
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E ++P ++N L++G + R+ +A + ++M+ + L +VT+GT++ G+C
Sbjct: 1 MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
AL L M + +KPD +++++I LC G S A EM+ I
Sbjct: 61 TKSALNLLSKMEETH-IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGI 111
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 113/212 (53%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+L Y+ +I + + + Q+L + + ++ P+ + F +I+ + + R + A ++
Sbjct: 89 NVLTYNCMIDSFCHSGRWSDADQLLRHMI-EKQINPDIVTFSALINAFVKERKVSEAEEI 147
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
+ EM +++ T ++N++++ ++D RM D + K SPD +++ L++G
Sbjct: 148 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLD--SMASKGCSPDVVTFSTLINGY 205
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++R+++ ++F EM +R + VT+ TLI+G C +D A L +M+ V PD
Sbjct: 206 CKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISC-GVAPD 264
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
F ++ GLC+ EL A E++ ++++
Sbjct: 265 YITFHCMLAGLCSKKELRKAFAILEDLQKSEV 296
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
+A +F EM + V ++N ++++ G+ L + M EK ++PD +++ L+
Sbjct: 73 NAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALI 132
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ V R++ +A +++ EML+ + PT +T+ ++I G C + RVD+A ++ D M
Sbjct: 133 NAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRML-DSMASKGC 191
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
PD F++LI G C + + EM R I
Sbjct: 192 SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 47/163 (28%)
Query: 122 VKSFNTLLNAMLTCGK-------IDRMTD------------------------------- 143
V +FNTL+N++ G+ +DRM +
Sbjct: 10 VVTFNTLMNSLCREGRVLEALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDG 69
Query: 144 -------LF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
LF ++ EK + P+ +YN ++ S R DA ++ M+++++ P +VTF
Sbjct: 70 NHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFS 129
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
LI E +V EA ++ ++M+R +++ P + S+I G C
Sbjct: 130 ALINAFVKERKVSEAEEIYKEMLR-WSIFPTTITYNSMIDGFC 171
>gi|125587689|gb|EAZ28353.1| hypothetical protein OsJ_12331 [Oryza sativa Japonica Group]
Length = 556
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 3/153 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVS 169
MS + ++ +N ++A ++D LF M+ + PD C++N L+ VV
Sbjct: 1 MSRRGLPSNIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVVG 60
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ DA V+DEM ++P + T+ ++ G C R+D+AL+L ++M Y VK DA V
Sbjct: 61 ARVADALVVYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVKGDAVV 120
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ SL+ GL +L A GF E MV + I+ A
Sbjct: 121 YNSLLDGLFKAKKLDEACGFFETMVADGIQCSA 153
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQ 108
N+ Y++ I G+ + D ++ +K + +VP+ ++I + AL
Sbjct: 9 NIRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVVGARVADALV 68
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGC 166
V+DEM SF ++ V ++ +++ ++D LFQ M V DA YN L+ G
Sbjct: 69 VYDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEMRGSYGVKGDAVVYNSLLDGL 128
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+++L++A F+ M+ +Q + T T+I GL R + A +L D+ R + D
Sbjct: 129 FKAKKLDEACGFFETMVADGIQCSASTHNTVIDGLFKNGRAEAACRLFYDLRRKGQL-LD 187
Query: 227 AQVFASLIKGLCAVGE 242
++ +++ C G+
Sbjct: 188 GIAYSIMVREFCKEGK 203
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y+ ++T + +V ILH+ ++ P +I N +I G+ E A + E
Sbjct: 398 YNSLMTSFVKKGYLKQVWAILHE--RGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISE 455
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+S V + +NTL+N + GK+D L QI+ + + PD ++N L++ + R
Sbjct: 456 LSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGR 515
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L++A K +M+ + P T L++
Sbjct: 516 LKEADKYLRKMIAEGIAPNYATETILVF 543
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 376 LSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDIATYNL 435
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + E A + E+ K+ + +V + TLI L +VDEA L E ++
Sbjct: 436 IIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQIIG-R 494
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + +M+ I
Sbjct: 495 GIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGI 531
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 47/294 (15%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL+ +K+P+ A LF + +P + ++ + Y I+ +L
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSET 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
+M + V +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVNHVSRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME---------------------------------- 149
S+NTLLNA + + ++ LF E
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWM 175
Query: 150 --KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SY+ +++ + +L+DA ++FDEM +R + P + + LI G E
Sbjct: 176 WKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDH 235
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
A++L + ++ +V P+ + +I GL G + L E M +N+ E D
Sbjct: 236 KTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 121/244 (49%), Gaps = 11/244 (4%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+KD K A++L+ E + P N+ ++++I+ L + D+ +I ++K
Sbjct: 232 EKDHKTAMELWDRL------LEDSSVYP---NVKTHNIMISGLSKCGRVDDCLKIWERMK 282
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ R + + ++I A ++ A VF+E+ V ++NT+L CGKI
Sbjct: 283 QNERE-KDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKI 341
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L++IME S + SYNIL+ G + + ++++A ++ M + T+G I
Sbjct: 342 KESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFI 401
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+GLC+ V++AL + ++ + D +AS+I LC L A +EM ++ +
Sbjct: 402 HGLCVNGYVNKALGVMQE-VESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGV 460
Query: 259 EMDA 262
E+++
Sbjct: 461 ELNS 464
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 4/200 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I + K F++ + L + + P+ + VI+ +A L+ AL++
Sbjct: 148 NLQTYNVLIKMSCKKKEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDDALEL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
FDEMS V V +N L++ L +L+ + + V P+ ++NI++ G
Sbjct: 207 FDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLS 266
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R++D K+++ M + + L T+ +LI+GLC VD+A + ++ D
Sbjct: 267 KCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDE-RKASIDV 325
Query: 228 QVFASLIKGLCAVGELSLAL 247
+ +++ G C G++ +L
Sbjct: 326 VTYNTMLGGFCRCGKIKESL 345
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+ ++I + + LE A + EMS V+ N L+ ++ ++ + + M
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K P SYNIL+ G + + +A EML+ +P L T+ L+ GLC + ++D
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID 551
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
AL+L ++ ++ D + LI GLC+VG+L A+
Sbjct: 552 LALELWHQFLQS-GLETDVMMHNILIHGLCSVGKLDDAM 589
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHAL 107
N++ Y+++I L DE I + + IF + + G + AL
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNG---YVNKAL 414
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
V E+ S V ++ ++++ + +++ ++L + M K+ V ++ N L+ G
Sbjct: 415 GVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ RL +A EM K +PT+V++ LI GLC + EA ++M+ KPD
Sbjct: 475 IRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE-NGWKPD 533
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ L+ GLC ++ LAL + +++ +E D
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETD 568
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQL-----KHDTRVVPEEIIFCNVISFYGRARL 102
R ++ Y+++I L +A F E + ++ K D + I+ C + R R
Sbjct: 496 RPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYS--ILLCGLC----RDRK 549
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNI 161
++ AL+++ + ++ V N L++ + + GK+D MT + + + + + +YN
Sbjct: 550 IDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM G A ++ M K LQP ++++ T++ GLC+ V A++ +D R +
Sbjct: 610 LMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD-ARNH 668
Query: 222 NVKPDAQVFASLIKGL 237
+ P + L++ +
Sbjct: 669 GIFPTVYTWNILVRAV 684
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y II L + K +E ++ ++ KH + CN +I R L A
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSH---VCNALIGGLIRDSRLGEASFFLR 488
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSR 170
EM + TV S+N L+ + GK + +++E PD +Y+IL+ G R
Sbjct: 489 EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+++ A +++ + L+ L+ ++ LI+GLC ++D+A+ + +M N + +
Sbjct: 549 KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEH-RNCTANLVTY 607
Query: 231 ASLIKGLCAVGELSLA 246
+L++G VG+ + A
Sbjct: 608 NTLMEGFFKVGDSNRA 623
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 13/194 (6%)
Query: 59 TKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++LG A F + K+ R VV I+ C + +A A EM
Sbjct: 478 SRLGEASFF-----LREMGKNGCRPTVVSYNILICGLC----KAGKFGEASAFVKEMLEN 528
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+ +K+++ LL + KID +L+ Q ++ + D +NIL+HG +L+DA
Sbjct: 529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDA 588
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
V M R LVT+ TL+ G + A + M ++ ++PD + +++K
Sbjct: 589 MTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKM-GLQPDIISYNTIMK 647
Query: 236 GLCAVGELSLALGF 249
GLC +S A+ F
Sbjct: 648 GLCMCRGVSYAMEF 661
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 15/240 (6%)
Query: 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
N +PF+L LL L D +++LF + T +Q K +R++ Y ++I KL
Sbjct: 65 NSFHKITPFQLCKLLELPLDVSTSMELF-------SWTGSQ--KGYRHSFDVYQVLIGKL 115
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQR 120
G F + ++L Q+K D +V +E +F +++ Y +A ++ EM + ++ +
Sbjct: 116 GSNGEFKTIDRLLMQMK-DEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEP 174
Query: 121 TVKSFNTLLNAMLT--CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
T KS+N +L +++ C K+ + ++ + + P ++ ++M ++ A V
Sbjct: 175 TFKSYNVVLEILVSGNCHKVAANV-FYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSV 233
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+M K P V + TLI+ L RV+EAL+L E+M + V PDA+ F +I GLC
Sbjct: 234 LRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLC 292
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 107/239 (44%), Gaps = 6/239 (2%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
D L L F N ++ F + + Y ++ L + D + + +++
Sbjct: 286 DVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKP 345
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
T V+ +I F RL + + D ++S+ + V ++N+L+ G +
Sbjct: 346 TSVIFNTLIH----GFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGL 401
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++ + M K P+ SY IL+ G ++++A+ + +EM L+P V F LI
Sbjct: 402 ALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLIS 461
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C E R+ EA+++ +M R KPD F SLI GLC V E+ AL +M+ +
Sbjct: 462 AFCKEHRIPEAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 519
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 6/212 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A LKP N + ++ +I+ + E +I ++ P+ F ++IS
Sbjct: 442 NEMSADGLKP---NTVGFNCLISAFCKEHRIPEAVEIFREMPRKG-CKPDVYTFNSLISG 497
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD 155
++HAL + +M S V ++NTL+NA L G+I L M S D
Sbjct: 498 LCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLD 557
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G + ++ A +F++ML+ L P+ ++ LI GLC V+EA++ ++
Sbjct: 558 EITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQK 617
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+M+ + PD F SLI GLC G + L
Sbjct: 618 EMV-LRGSTPDIVTFNSLINGLCRAGRIEDGL 648
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 35/227 (15%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
D+ + +L + +VP+ + ++I Y + L+ AL+V +M + + V S+
Sbjct: 363 LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYT 422
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ GKID +L M + P+ +N L+ R+ +A ++F EM ++
Sbjct: 423 ILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRK 482
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVKPDA---------- 227
+P + TF +LI GLC + AL L DM+ YN +A
Sbjct: 483 GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEA 542
Query: 228 ----------------QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ SLIKGLC GE+ A E+M+R+ +
Sbjct: 543 RKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 68 DEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+EV L L+ T+ VP +I+ +I + + ALQ+ +EM ++F
Sbjct: 225 NEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 284
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG-CVVSRRLEDAWKVFD 180
N + +L K DR+ + +++ + + +PD +Y LM+G C + R DA K
Sbjct: 285 N---DVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGR--VDAAK--- 336
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
++ R +PT V F TLI+G R+D+A + DM+ Y + PD + SLI G
Sbjct: 337 DLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKK 396
Query: 241 GELSLALGFKEEMVRNK 257
G + LAL +M RNK
Sbjct: 397 GLVGLALEVLRDM-RNK 412
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 107/211 (50%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y +++ + DE +L+++ D + P + F +IS + + +
Sbjct: 412 KGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADG-LKPNTVGFNCLISAFCKEHRIP 470
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A+++F EM + V +FN+L++ + +I L + ++ + V + +YN L+
Sbjct: 471 EAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 530
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + +++A K+ +EM+ + +T+ +LI GLC VD+A L E M+R +
Sbjct: 531 NAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLR-DGL 589
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P + LI GLC G + A+ F++EMV
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEFQKEMV 620
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVF 110
+ Y+ +I L RA D+ + + ++ D +VP I CN+ I+ R+ ++E A++
Sbjct: 559 ITYNSLIKGLCRAGEVDKARSLFEKMLRDG-LVPSSIS-CNILINGLCRSGMVEEAVEFQ 616
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
EM + +FN+L+N + G+I D +T ++ + + PD +YN LM
Sbjct: 617 KEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKG 676
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ DA + DE ++ P T+ L+ L
Sbjct: 677 GFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 3/199 (1%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
KM DE + ++ H ++ P+ +I+ ++I ++ +AL+ EM + +
Sbjct: 285 KMVDEAMNLFEEM-HFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFT 343
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N+LL+A+ +D+ +L ++ ++ + P C+YNIL++G S RL+DA KVF+++L
Sbjct: 344 YNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL 403
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ + T+ +I G C + DE L + M+ PDA+ +I+ L GE
Sbjct: 404 VKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSK-MKDSGCSPDAKNCEIIIRSLFDKGEN 462
Query: 244 SLALGFKEEMVRNKIEMDA 262
A F+E +VR K +A
Sbjct: 463 DKAGKFREMIVRGKCHREA 481
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+ AL D++ + + S+ TL+N + G+ + + I K V PD YN
Sbjct: 98 IHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNT 157
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + + DA+ ++ EM+ +R+ P++VT+ TLI GLC+ ++ +A+ L M+ +
Sbjct: 158 IIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMI-LE 216
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
++ P F+ LI C G++ A
Sbjct: 217 DINPTVYTFSILIDAFCKEGKMKEA 241
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 19/225 (8%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLL 103
+ F+ N + Y +I L + + L ++ D ++V P+ +++ +I + +L+
Sbjct: 111 QGFKLNQVSYGTLINGLCKVGQTRAALEFLRRI--DGKLVQPDVVMYNTIIDGLCKDKLV 168
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNIL 162
A ++ EM + + +V ++NTL+ + ++ D + L +++ + ++P +++IL
Sbjct: 169 NDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSIL 228
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--------------LRVD 208
+ ++++A VF M+K ++P +VT+ +L+ G L VD
Sbjct: 229 IDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVD 288
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
EA+ L E+ M + PD ++ SLI GLC G AL F EM
Sbjct: 289 EAMNLFEE-MHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEM 332
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++ VF +LK+ +TF TLI GLCL+ + +AL D + K + + +LI
Sbjct: 66 SFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHF-HDKVVAQGFKLNQVSYGTLI 124
Query: 235 KGLCAVGELSLALGF 249
GLC VG+ AL F
Sbjct: 125 NGLCKVGQTRAALEF 139
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
I++K DA ++ L+ G + + A D+++ + + V++GTLI GLC
Sbjct: 72 NILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLC--- 128
Query: 206 RVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+V + E + R+ V+PD ++ ++I GLC ++ A EMV +I
Sbjct: 129 KVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRI 183
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 118/236 (50%), Gaps = 11/236 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A++++ QK+P AL++F + + F++ LL Y +I KLG F+
Sbjct: 7 PKHVAAVVKYQKNPLKALEIFNS---------VKKEDGFKHTLLTYKGMIEKLGFHGEFE 57
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
++++L + + + E ++ + YGR ++ A+ VF+ M FN + +V+S+N +
Sbjct: 58 AMEEVLAETRMNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAI 117
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N ++ D+ ++ M +K + PD ++ I M + R A ++ + M +
Sbjct: 118 MNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGC 177
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ + V + T+I G E EA +L E+M+ + + PD F LI LC G +
Sbjct: 178 ESSAVAYCTVIGGFYEENHRVEAHELFEEMLGL-GICPDIMAFNKLIHTLCRKGHV 232
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 38/203 (18%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ F +I Y + L++A+++ D M + V V ++N++LN + GK + +
Sbjct: 457 LPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMG 516
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F++M EK P+ +YNIL +R++E+A + +EM + L P +V FGTL+ G C
Sbjct: 517 TFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFC 576
Query: 203 ----------LELRVDEALKLKEDMMRVYNV--------------------------KPD 226
L RVDE K + YN+ PD
Sbjct: 577 DNGDLDGAYQLFKRVDEQYKFSH-TIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPD 635
Query: 227 AQVFASLIKGLCAVGELSLALGF 249
+ + +I G C G ++ F
Sbjct: 636 SYTYRVMIDGFCKTGNINSGYSF 658
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 3/196 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + M QIL VP+E +C++I+ + ++ A+ VF+E
Sbjct: 323 YNSIIDGYCKLGMMQNADQILRDGAFKG-FVPDESTYCSLINGLCQDGDIDRAINVFNEA 381
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ + NTL+ + G I + L M E SPD +YN++++G +
Sbjct: 382 MEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCV 441
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA + + + + P + TF TLI G C +L++D A+++ D M + V PD + S
Sbjct: 442 SDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIV-DRMWNHGVSPDVITYNS 500
Query: 233 LIKGLCAVGELSLALG 248
++ GLC G+ +G
Sbjct: 501 ILNGLCKAGKYEDVMG 516
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L + FD+ ++ +++ D +VP+ F + + R A ++ + M
Sbjct: 114 YNAIMNILVEYRYFDQAHKVYMRMR-DKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNM 172
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + + ++ T++ +LF+ M + PD ++N L+H +
Sbjct: 173 PSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHV 232
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+++ ++ +++LKR + P L T I G C ++EA++L + + R + PD + +
Sbjct: 233 QESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGR--GLTPDVITYNT 290
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI GLC ++ A + +MV E D
Sbjct: 291 LICGLCKNFKVVEAEHYLRKMVNEGYEPDG 320
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++ +A+ +E ++ +++ + + P+ + F ++ + L+ A Q+
Sbjct: 529 NIITYNILTESFCKARKVEEALNLIEEMQ-NKGLTPDVVNFGTLMKGFCDNGDLDGAYQL 587
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F + + T+ ++N ++NA ++ LF M E SPD+ +Y +++ G
Sbjct: 588 FKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFC 647
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ + + +++ L P+L TFG ++ LCL+ RV EA+ +
Sbjct: 648 KTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGI 693
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + E + L ++ ++ P+ + ++I Y + ++++A Q+
Sbjct: 284 DVITYNTLICGLCKNFKVVEAEHYLRKMVNEG-YEPDGFTYNSIIDGYCKLGMMQNADQI 342
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ + ++ +L+N + G IDR ++F + MEK + P+ N L+ G
Sbjct: 343 LRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQ 402
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A K+ +EM + P + T+ +I GLC V +A L D + ++ PD
Sbjct: 403 QGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHL-PDVF 461
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +LI G C +L A+ + M + + D
Sbjct: 462 TFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPD 494
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 100/215 (46%), Gaps = 8/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
+++ ++ +I L R E +++L+++ R V + N+ I + + +L A++
Sbjct: 215 DIMAFNKLIHTLCRKGHVQESERLLNKVL--KRGVSPNLFTVNIFIQGFCQRAMLNEAIR 272
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGC 166
+ D + + V ++NTL+ + K+ + M E Y PD +YN ++ G
Sbjct: 273 LLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGY-EPDGFTYNSIIDGY 330
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+++A ++ + + P T+ +LI GLC + +D A+ + + M +KP+
Sbjct: 331 CKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME-KGLKPN 389
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+KGL G + AL EM N D
Sbjct: 390 LVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPD 424
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 41/204 (20%)
Query: 88 IIFCNVIS-FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF- 145
+ +C VI FY +E A ++F+EM + + +FN L++ + G + L
Sbjct: 182 VAYCTVIGGFYEENHRVE-AHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLN 240
Query: 146 QIMEKYVSP----------------------------------DACSYNILMHGCVVSRR 171
+++++ VSP D +YN L+ G + +
Sbjct: 241 KVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFK 300
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ +A +M+ +P T+ ++I G C L + + L++ + + PD +
Sbjct: 301 VVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGF--VPDESTY 358
Query: 231 ASLIKGLCAVGELSLALG-FKEEM 253
SLI GLC G++ A+ F E M
Sbjct: 359 CSLINGLCQDGDIDRAINVFNEAM 382
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ + L ++ ++ ++ L H + P+ +C +I + A + A +
Sbjct: 556 NNVVYNIAMAGLCKSGKVNDARRFFLGLSHGS-FTPDNFTYCTLIHGFSAAGYVNEAFNL 614
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEM + + + ++N LLN + G +DR LF + K + P+ +YNIL+ G
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCK 674
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +A + +MLK + P+++T+ +LI G C + V+EA+KL + M+ NV
Sbjct: 675 SGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKLLNE-MKASNVDQTIA 733
Query: 229 VFASLIKGLCAVGEL 243
F+ L++G G++
Sbjct: 734 TFSKLVEGCIQHGDV 748
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 2/192 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+E +++L +++ + VV +E + +I Y + + A++V DEM ++ + N+
Sbjct: 153 EEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNS 212
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L+N G++ L M K + PD+ SY L+ G A+ V D+ML++
Sbjct: 213 LINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKG 272
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
++PT+VT+ TL+ GLC +AL+L M++ V P+ + +L+ GL +G+ S A
Sbjct: 273 IEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQ-RGVTPNEVGYCTLLDGLFKMGDFSRA 331
Query: 247 LGFKEEMVRNKI 258
L ++++ I
Sbjct: 332 LTLWDDILARGI 343
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ +C ++ Y R L A V D+M ++ TV ++NTLL + G L
Sbjct: 240 PDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRL 299
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +M ++ V+P+ Y L+ G A ++D++L R + ++ F T+I GLC
Sbjct: 300 WHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLWDDILARGINKSIYAFNTMINGLCK 359
Query: 204 ELRVDEALKLKEDMMRV--YNVKPDAQVFASLIKGLCAVGELSLAL 247
+D A KE R+ KPD + +L G C VG + A
Sbjct: 360 MGEMDGA---KETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAF 402
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A+ V+D+M ++ V + ++NA GK++R + + MEK +A SYN L+
Sbjct: 50 AVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVD 109
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G V +E A V M ++ + VT LI G C + +V+EA K+ +M + V
Sbjct: 110 GYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVV 169
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI G C VG++ A+ ++EM++ ++M+
Sbjct: 170 VDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMN 206
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ ++ L R + + ++ H L V P E+ +C ++ + AL ++
Sbjct: 277 VVTYNTLLKGLCRFGDYKDALRLWH-LMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLW 335
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
D++ + + +++ +FNT++N + G++D + F+ ME+ PD +Y L G
Sbjct: 336 DDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKV 395
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+E+A+K+ ++M K + P++ + +LI GL ++ + + L + M + P+
Sbjct: 396 GNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAE-MDTRGLSPNVVT 454
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C G L A EM+
Sbjct: 455 YGALIAGWCDQGRLDKAFSAYFEMI 479
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 38/214 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ +++ Y +A +E A++ EM + S+N+L++ ++ G I+
Sbjct: 62 IVPDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAK 121
Query: 143 DLFQIM-------------------------------------EKYVSPDACSYNILMHG 165
+ + M E V D +Y L+ G
Sbjct: 122 GVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDG 181
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ DA +V DEMLK L+ L +LI G C +V E +L MR ++KP
Sbjct: 182 YCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLM-CMRKLDLKP 240
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D+ + +L+ G C G S A ++M+R IE
Sbjct: 241 DSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIE 274
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 6/166 (3%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV---QRTVKSFNTLLNAMLTCGKIDR 140
P II ++S R ++ A + +M F++ R ++ F L C KI
Sbjct: 484 APNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKIAD 543
Query: 141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
D I K+ P+ YNI M G S ++ DA + F + P T+ TLI+G
Sbjct: 544 TLDESAI--KFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHG 601
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
V+EA L+++M+ + P+ + +L+ GLC G L A
Sbjct: 602 FSAAGYVNEAFNLRDEMVN-KGLVPNITTYNALLNGLCKSGYLDRA 646
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++ +I L + D ++ +++ + P+ I + + Y + +E A ++
Sbjct: 346 SIYAFNTMINGLCKMGEMDGAKETFKRME-ELGCKPDGITYRTLSDGYCKVGNVEEAFKI 404
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
++M + +++ +N+L+ + T KI ++ DL M+ + +SP+ +Y L+ G
Sbjct: 405 KEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCD 464
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
RL+ A+ + EM+ + P ++ ++ L R+DEA L + M+
Sbjct: 465 QGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMV 514
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 19/210 (9%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+ +I L +K ++ +L ++ DTR + P + + +I+ + L+ A + E
Sbjct: 420 YNSLIVGLFTSKKISKLIDLLAEM--DTRGLSPNVVTYGALIAGWCDQGRLDKAFSAYFE 477
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV----- 167
M V + +++++ G+ID L Q K V D +L H C+
Sbjct: 478 MIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQ---KMVDFDL----VLDHRCLEDFQN 530
Query: 168 VSRRLEDAWKVFDEMLKRRLQ---PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
R D WK+ D + + ++ P V + + GLC +V++A + + +
Sbjct: 531 ADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHG-SFT 589
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
PD + +LI G A G ++ A ++EMV
Sbjct: 590 PDNFTYCTLIHGFSAAGYVNEAFNLRDEMV 619
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A VFD M K +P+L + +L+ L A+ L D MR ++ PD A
Sbjct: 12 VKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAV-LVYDQMRRLDIVPDVFTCA 70
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ C G++ A+ F EM + E++A
Sbjct: 71 IMVNAYCKAGKVERAVEFVREMEKLGFELNA 101
>gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 466
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 117/239 (48%), Gaps = 12/239 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L R + D K AL +F+ A+ ++++ YD ++ +G+ K D+++ +L
Sbjct: 58 LFRFKDDWKSALGVFR---------WAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLL 108
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++ V + + + + AR E+ L+VFD++ +F +++ +S N LL+ +
Sbjct: 109 EEMEKGQHVTLKTV--GKAMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCK 166
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
K++ ++F ++ ++SP+A ++NI +HG R+E+A+ EM P ++++
Sbjct: 167 ERKVELAREIFLDLKSHISPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISY 226
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
T++ C + +L D M + P+ + S++ L E AL + M
Sbjct: 227 STIVQFYCHRSNFSKVYELL-DEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRM 284
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 10/208 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++ I + +E + ++K P I + ++ FY ++ DEM
Sbjct: 191 FNIFIHGWCKVNRVEEAYWTIQEMK-GHGCTPCVISYSTIVQFYCHRSNFSKVYELLDEM 249
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVS 169
+ + V ++ ++++A+ K + + QI ++ S PD YN L+H +
Sbjct: 250 EAQGLIPNVVTYTSVMSAL---AKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLGKA 306
Query: 170 RRLEDAWKVFD-EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R E+A +VF+ EM + P T+ ++I LC + +AL L +++ KPD Q
Sbjct: 307 GRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKPDVQ 366
Query: 229 VFASLIKGLCAVGEL-SLALGFKEEMVR 255
+ L+K G + SL ++MV+
Sbjct: 367 TYYPLLKSCFKAGSIDSLLSQLLDDMVK 394
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
+ EAQ L P N++ Y +++ L +++ ++E QI ++K P+ + + ++I
Sbjct: 247 DEMEAQGLIP---NVVTYTSVMSALAKSEEYEEALQIAQRMK-SVGCKPDTLFYNSLIHT 302
Query: 97 YGRARLLEHALQVFD-EMSSFNVQRTVKSFNT---------------------------- 127
G+A E A+QVF+ EM + V ++N+
Sbjct: 303 LGKAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICK 362
Query: 128 --------LLNAMLTCGKIDRM-TDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAW 176
LL + G ID + + L M K ++S D +Y +L+HG + + E A+
Sbjct: 363 PDVQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWAY 422
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+F+EM+ + + P T L+ + L+ D A K++ M ++
Sbjct: 423 CLFEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKIEIVMQKI 466
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 108/208 (51%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + DE +++L ++ + ++P + + +I Y + +++ A ++
Sbjct: 333 NVHTYTVLIDGLCKENKMDEARKMLSEMS-EKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
D M S + +++N L+ + K+ + M L +++E+ +SP +YN L+HG
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A+++ M + L P T+ I LC E RV+EA L D ++ VK +
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF-DSVKAKGVKANEV 510
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
++ +LI G C VG++ +A E M+ +
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLND 538
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 2/173 (1%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
E+ + N+I A + AL++F +M+ N TV+++ L+ A+ G+ +LF
Sbjct: 264 EVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFN 323
Query: 147 IM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M EK P+ +Y +L+ G ++++A K+ EM ++ L P++VT+ LI G C E
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+D+A ++ D+M + P+ + + LI GLC ++ A+ +M+ K+
Sbjct: 384 MIDDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 3/205 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K + N + Y +I L A +E ++ + D + + G R
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRK 315
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
+E AL +F+EM + V ++ L++ + K+D + M EK + P +YN
Sbjct: 316 VE-ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G ++DA+++ D M P T+ LI GLC + +V +A+ L M+
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-R 433
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+ P + SLI G C V +L A
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESA 458
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 39/278 (14%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P ++SL DP+ AL F P F++N+ Y ++ L RA++
Sbjct: 67 TPSHVSSLFAFNLDPQTALSFFNWIALRPG---------FKHNVHSYSSMLNILIRARLL 117
Query: 68 DEVQQI-LHQLKHDTRVVPEEIIFC-----------------------NVISFYGRARLL 103
++I + +K + E+++F ++ + L+
Sbjct: 118 GVAEKIRISMIKSCCSI--EDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLI 175
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNI 161
+ V+ E+ + + + +FN ++N G + +L+ +I++ + PD +Y
Sbjct: 176 DEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVE-AELYASKIVQAGLHPDTFTYTS 234
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G ++ +++A++VF M ++ Q V++ LI+GLC R++EALKL DM
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTE-D 293
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
N P + + LI L G AL EM E
Sbjct: 294 NCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+L+ Y+ +I G+ K+ D E L L ++ +VP++ + I + +E A
Sbjct: 438 SLITYNSLIH--GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+FD + + V+ + L++ GKID L + ++ P++ +YN+L+ G
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+++++A + +ML ++PT+VT+ LI + + D ALK+ M+ + +PD
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL-GYQPDV 614
Query: 228 QVFASLIKGLCAVGEL 243
+ + + + G L
Sbjct: 615 CTYTAFLHAYFSQGML 630
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 67/274 (24%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+++I L + K E ++ ++ V P + + +I + +HAL+V
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKML-TMGVKPTVVTYTILIGEMLKDGAFDHALKV 601
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI------- 161
F+ M S Q V ++ L+A + G ++ + D+ M E+ + PD +Y +
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661
Query: 162 --LMH------------GC----------------------------------VVSRRLE 173
L H GC V S +
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIA 721
Query: 174 DAWK---------VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
D WK +F++M++ + +G LI G C + R++EA L M+ +
Sbjct: 722 DVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHH-MKERGMS 780
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P ++ SL+ C +G + A+ + MV N +
Sbjct: 781 PSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 814
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 9/197 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + Y +I + D +L ++ +D +P + +I + + ++
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMK 561
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A + +M + V+ TV ++ L+ ML G D +F M PD C+Y +
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG---LCLELRVDEALKLKEDMMRV 220
H LE+ V +M + + P LVT+ LI G L L R + LK D
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT--- 678
Query: 221 YNVKPDAQVFASLIKGL 237
KP + + LIK L
Sbjct: 679 -GCKPSLYIVSILIKNL 694
>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 484
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+A +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLMIDSYGKAGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P ++NI++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSRXITPDVITYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+LIKG +V + AL EEM
Sbjct: 219 TVVTXTTLIKGYVSVDRVDDALRLXEEM 246
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 104/233 (44%), Gaps = 72/233 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + ++PD +YN +++G +++E+A K F EM R ++PT+VT TLI G
Sbjct: 171 RFFEDMKSRXITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
RVD+AL+L E+ M+ + +KP+A +++L+ GLC ++S A +EMV
Sbjct: 231 VSVDRVDDALRLXEE-MKGFGIKPNAITYSTLLPGLCNAEKMSEARSXLKEMV 282
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV + TL+ ++ ++D
Sbjct: 181 ITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGYVSVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A EM+ + + PT + F LI G
Sbjct: 241 RLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLQAMIRL-SVPTEAGHYGVLIENYCKAGQYDKAINLLDKLIEKDI 357
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 110/241 (45%), Gaps = 42/241 (17%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS- 115
+I ++ F + Q+L ++K + RV+ E IF + G+A L A+ F M++
Sbjct: 71 LIENYATSREFHFIHQVLDRMKREGRVL-TETIFILIFKACGKAHLPGEAVNFFHRMAND 129
Query: 116 FNVQRTVKSFNTLLN--------------------------------------AMLTCGK 137
+ ++TVKSFN++LN A+ G+
Sbjct: 130 LHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ 189
Query: 138 IDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
IDR D F+ M K +PD +Y+ LM+G RR+++A + DEM P VTF
Sbjct: 190 IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNV 249
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
LI L + A KL ++M + P+ + +LI GLC G+L AL E+MV +
Sbjct: 250 LIDALSKNGDLSRAAKLVDNMF-LKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS 308
Query: 257 K 257
K
Sbjct: 309 K 309
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 3/211 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F+ NLL Y+LII L + D ++ P+ + +++ + R ++
Sbjct: 168 KGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKN-CNPDVFTYSTLMNGLCKERRVD 226
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A+ + DEM + +FN L++A+ G + R L M K P+ +YN L+
Sbjct: 227 EAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLI 286
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + +L+ A + ++M+ + P VT+GT+I GL + R ++ + + M
Sbjct: 287 HGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEE-RGQ 345
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
K + +++SLI GL G+ A+ +EM
Sbjct: 346 KANEYIYSSLISGLFKEGKSENAVRLWKEMA 376
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 44/251 (17%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
PLK ++ Y ++ L + + DE +L +++ + +P + F +I +
Sbjct: 201 PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEG-CLPNPVTFNVLIDALSKNGD 259
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACS 158
L A ++ D M ++NTL++ + GK+D+ L +EK VS P+ +
Sbjct: 260 LSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSL---LEKMVSSKCVPNQVT 316
Query: 159 YNILMHGCVVSRRLED-----------------------------------AWKVFDEML 183
Y +++G V RR ED A +++ EM
Sbjct: 317 YGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMA 376
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++ +P +V +G I GLC + + DEA + ++M+ P+A ++SL+KG G+
Sbjct: 377 EKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS-KGFLPNAFTYSSLMKGFFKKGDS 435
Query: 244 SLALGFKEEMV 254
A+ +EM+
Sbjct: 436 QKAILVWKEMM 446
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y II L + + ++ IL ++ + E I+ ++IS + E+A+++
Sbjct: 313 NQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKA-NEYIYSSLISGLFKEGKSENAVRL 371
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG--- 165
+ EM+ + V + ++ + K D D+ Q ++ K P+A +Y+ LM G
Sbjct: 372 WKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFK 431
Query: 166 -------------------------CVV-------SRRLEDAWKVFDEMLKRRLQPTLVT 193
C V S RL +A V+ ML L+P +V
Sbjct: 432 KGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVA 491
Query: 194 FGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ ++I GLC VD+ LKL +M + +PD + L LC L+ A+
Sbjct: 492 YSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNS 551
Query: 253 MVRNKIEMDA 262
M+ + D+
Sbjct: 552 MLDEGCDPDS 561
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II ++ M E ++L VP+ + +C++I+ +E AL++F+E
Sbjct: 318 YNTIIDGYCKSGMLQEATELLKDAVFKG-FVPDRVTYCSLINGLCAEGDIERALELFNEA 376
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +++ + +N+L+ + G I + + +++E+ PD +YNI+++G +
Sbjct: 377 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNI 436
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA V ++ + + P + TF TLI G C L++D AL+L E M Y + PD + S
Sbjct: 437 SDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW-TYGIAPDVITYNS 495
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
++ GLC G+ EEM+
Sbjct: 496 VLNGLCKAGKAKEVNETFEEMI 517
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNI 161
LE A+ + + M ++ V V ++NTL+ + K+ L ++M + PD +YN
Sbjct: 262 LEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNT 320
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G S L++A ++ + + + P VT+ +LI GLC E ++ AL+L + +
Sbjct: 321 IIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEA-QAK 379
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++KPD V+ SL+KGLC G + AL EMV D
Sbjct: 380 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPD 419
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 90 FCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM---------------- 132
+C V+ Y +A +FDEM +V V +FN +L+A+
Sbjct: 179 YCTVVRGLYAHGHGY-NARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKV 237
Query: 133 ---------LTC----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
TC G+++ L + M YV+PD +YN LM G +++
Sbjct: 238 LKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQ 297
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + M+ + P T+ T+I G C + EA +L +D + PD + SL
Sbjct: 298 EAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAV-FKGFVPDRVTYCSL 356
Query: 234 IKGLCAVGELSLAL 247
I GLCA G++ AL
Sbjct: 357 INGLCAEGDIERAL 370
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 42/243 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV---VPEEIIFCNVISFYGRARLLEHA 106
++ Y++II L + + +++ D V +P+ F +I Y + L+ A
Sbjct: 419 DIWTYNIIINGLCKMGNISDAAVVMN----DAIVKGYLPDVFTFNTLIDGYCKRLKLDSA 474
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG 165
LQ+ + M ++ + V ++N++LN + GK + + F+ ++ K P+A +YNIL+
Sbjct: 475 LQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 534
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKED----M 217
+LE+A V M + L P V+F TLI+G C +D A KL E
Sbjct: 535 FCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT 594
Query: 218 MRVYNV--------------------------KPDAQVFASLIKGLCAVGELSLALGFKE 251
+N+ KPD + L+ GLC + A
Sbjct: 595 ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLA 654
Query: 252 EMV 254
EM+
Sbjct: 655 EMI 657
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 2/182 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LK R N + Y+++I + +E ++ ++ D +VP+ + F +I + R
Sbjct: 514 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDG-LVPDAVSFNTLIHGFCR 572
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L+ A +F ++ T +FN L+ A + + +F +++ K PD +
Sbjct: 573 NGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYT 632
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y IL+ G + ++ A+ EM+ + P++ TFG ++ L + RV EA+ + M+
Sbjct: 633 YRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMV 692
Query: 219 RV 220
R+
Sbjct: 693 RM 694
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D + AL+LF N +A+ LKP +L+ Y+ ++ L R + Q+++++
Sbjct: 363 EGDIERALELF-------NEAQAKDLKP---DLVVYNSLVKGLCRQGLILHALQVMNEMV 412
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ P+ + +I+ + + A V ++ V +FNTL++ K+
Sbjct: 413 EEG-CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKL 471
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D L + M Y ++PD +YN +++G + + ++ + F+EM+ + +P +T+ L
Sbjct: 472 DSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 531
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
I C +++EA + M + + PDA F +LI G C G+L A
Sbjct: 532 IENFCKINQLEEASGVIVRMCQD-GLVPDAVSFNTLIHGFCRNGDLDGA 579
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
AL++ +S ++ T++ + G LF +++ + V PD ++N ++H
Sbjct: 160 ALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLH 219
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ ++ + ++LKR + T I GLC + R++EA+ L E M V
Sbjct: 220 ALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAY--VA 277
Query: 225 PDAQVFASLIKGLC 238
PD + +L++GLC
Sbjct: 278 PDVVTYNTLMRGLC 291
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ A G++ D F+ M+ + P A +YN +M V + + A KV+ ML +
Sbjct: 78 IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIKGLCAVGELSLA 246
P T + CL R AL+L + R + KP A + ++++GL A G A
Sbjct: 138 APDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAA--YCTVVRGLYAHGHGYNA 195
Query: 247 LGFKEEMVRNKI 258
+EM+ +
Sbjct: 196 RHLFDEMLGRDV 207
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 3/209 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ N++ Y ++ L + + E + ++ + P+ + ++I +H
Sbjct: 157 FQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKG-ISPDIFTYNSLIHALCNLCEWKHV 215
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+ +EM + V S N +++A+ GK+ D+ +M + V PD +Y LM G
Sbjct: 216 TTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +++A KVFD M++ +V++ TLI G C R+D+A+ L E+M R + P
Sbjct: 276 HCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCR-QELIP 334
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +++LI GLC VG L A+ EMV
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMV 363
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++ L + E ++ + V P+ + + ++ + ++ A++V
Sbjct: 230 NVVSLNIVVDALCKEGKVTEAHDVVDMMIQGG-VEPDVVTYAALMDGHCLRSEMDEAVKV 288
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M V S+NTL+N +ID+ LF+ M + + P+ +Y+ L+HG
Sbjct: 289 FDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCH 348
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL+DA +F+EM+ P LVT+ L+ LC R+ EA+ L + + N+ PD Q
Sbjct: 349 VGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLK-AIEGSNLDPDVQ 407
Query: 229 VFASLIKGLCAVGELSLA 246
V+ I G+C G+L A
Sbjct: 408 VYNIAIDGMCRAGDLEAA 425
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
D+ H++ H P F +++ + + L + +M SF + V +
Sbjct: 37 LDDALSSFHRMLH-MHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLT 95
Query: 127 TLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
++N+ ++D ++ L +I++ PD ++ L+ G V ++ +A VFD+M+
Sbjct: 96 IVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGE 155
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
QP +VT+GTL+ GLC + ++ EAL L +M+ + PD + SLI LC + E
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMI-AKGISPDIFTYNSLIHALCNLCEWKH 214
Query: 246 ALGFKEEMVRNKI 258
EMV++KI
Sbjct: 215 VTTLLNEMVKSKI 227
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 2/173 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F ++ + AL VFD+M Q V ++ TL+N + ++ +L
Sbjct: 124 PDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNL 183
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ K +SPD +YN L+H + + +EM+K ++ P +V+ ++ LC
Sbjct: 184 FSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCK 243
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E +V EA + DMM V+PD +A+L+ G C E+ A+ + MVRN
Sbjct: 244 EGKVTEAHDVV-DMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRN 295
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 97/213 (45%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ + ++ ++P + + +I L+ A+ +
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQ-ELIPNTMTYSTLIHGLCHVGRLQDAIAL 358
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F+EM + + +++ LL+ + ++ L + +E + PD YNI + G
Sbjct: 359 FNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCR 418
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F + R LQP + T +I GLC +DEA KL +M ++ +
Sbjct: 419 AGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLR-NGC 477
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ +GL + S A+ EEM+ D
Sbjct: 478 TYNTITQGLLQNNKTSRAIQLLEEMLARGFSAD 510
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
L+ AL F M + + F LL ++ + L + M+ + + PD + I
Sbjct: 37 LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ R++ A V ++LK QP TF TL+ GLC+ ++ EAL + + M+
Sbjct: 97 VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG-E 155
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P+ + +L+ GLC +L+ AL EM+ I D
Sbjct: 156 GFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPD 195
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + E +L ++ + + P+ ++ I RA LE A +
Sbjct: 370 NLVTYSILLDYLCKNHRLAEAMALLKAIE-GSNLDPDVQVYNIAIDGMCRAGDLEAARDL 428
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F ++ +Q V + N ++ + G +D + LF+ M E + C+YN + G +
Sbjct: 429 FSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQ 488
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ + A ++ +EML R + T L+
Sbjct: 489 NNKTSRAIQLLEEMLARGFSADVSTTALLV 518
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 117/244 (47%), Gaps = 36/244 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L RA ++ EV L+ L D P+ F +I + + A Q+ + M
Sbjct: 1158 YNSLIHGLSRAGLWKEVTWFLN-LMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELM 1216
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ + ++NTL+N + G+++ T LF+ + ++ + + SYNIL++G +++
Sbjct: 1217 RHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKI 1276
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------MRVYNV- 223
++A++ F+EM + L+P+ VT+ TLI LC RV A KL +M + Y V
Sbjct: 1277 DEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVL 1336
Query: 224 -------------------------KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
KP+ +VF+ L+ G+C G+L A +E+ +N +
Sbjct: 1337 LDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGL 1396
Query: 259 EMDA 262
E D
Sbjct: 1397 EPDT 1400
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N+ Y+++I + + DE + +++ + P + + +I ++ +
Sbjct: 1254 RGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG-LKPSTVTYNTLIGALCQSGRVR 1312
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILM 163
A ++F EM + + ++ LL+ + G ++ DLFQ ++K P+ ++IL+
Sbjct: 1313 TAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILL 1372
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + +LE+AWK FDE+ K L+P + + LI GLC + + EA+KL M
Sbjct: 1373 DGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEE-KGC 1431
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
PD+ F +I+ L E+ A+ EEM RN+
Sbjct: 1432 LPDSITFNVIIQNLLKENEIHEAIQLLEEM-RNR 1464
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++ + A+Q+FDEM+ + K++ L+N + K L
Sbjct: 1014 PDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKL 1073
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ M+ D +Y +++ +A +F EM+ + P +V + +L+ GLC
Sbjct: 1074 HEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRF 1133
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
R+ EAL+ ++ M + D + SLI GL G F MV DA
Sbjct: 1134 GRLKEALEFFKE-MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 1190
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 114/291 (39%), Gaps = 51/291 (17%)
Query: 14 SLLRLQKDPKLALQLFKNP-NPNPNNTEAQ------PLKPF-RYNLLHYDLIITKLGRA- 64
S+L+ P LFKNP + +N++++ L PF RY I KL A
Sbjct: 872 SILQKSDIPXSLSSLFKNPPQRSGSNSKSEKIGTKASLSPFERYVRDQCRFGIIKLNDAI 931
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+FD + +P F ++++ + ++ +++ +Q + +
Sbjct: 932 KLFDR--------SLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYT 983
Query: 125 FNTLLNAMLTC-GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N L++ + +++ PDA + L+ G + + DA ++FDEM
Sbjct: 984 LNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMT 1043
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-------------------------- 217
K+ L T+G LI GLC + A+KL E M
Sbjct: 1044 KKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTE 1103
Query: 218 -------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M + PD V++SL+ GLC G L AL F +EM I D
Sbjct: 1104 ALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISAD 1154
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
+AR A+++ ++M N + V ++ +++A+ G D+F +++ + PD
Sbjct: 1063 KARKTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVV 1121
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y+ LM G RL++A + F EM R + + T+ +LI+GL E ++
Sbjct: 1122 VYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFL-NL 1180
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M PDA F LI GLC G++ A E M E D
Sbjct: 1181 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPD 1224
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + +E + +K T P +F ++ RA LE A + FDE+
Sbjct: 1333 YCVLLDGLCKNGHLEEAMDLFQSIKK-TEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ ++N L+N + G + L +Q+ EK PD+ ++N+++ + +
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451
Query: 173 EDAWKVFDEMLKRRLQP 189
+A ++ +EM R P
Sbjct: 1452 HEAIQLLEEMRNRNFSP 1468
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 2/214 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+R N++ ++ L AK DE IL + P+ + + VI+ + R +E A
Sbjct: 121 WRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKA 180
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+F EM + V ++ T+++ + +DR +FQ M ++ V PD +YN L+HG
Sbjct: 181 YNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG 240
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + + ++ ++ +EM L+P +T+ L+ LC R EA + M R +KP
Sbjct: 241 YLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFR-KGIKP 299
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D ++A L+ G G LS F + MV N +
Sbjct: 300 DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVS 333
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 38/249 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L +A++ D + + Q+ D V P+ + +I Y + +Q+
Sbjct: 195 NVVTYTTVIDGLCKAQVVDRAKGVFQQMI-DRGVKPDNGTYNCLIHGYLSTGKWKEVVQM 253
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG--- 165
+EMS+ ++ ++ LL+ + G+ F M K + PD Y IL+HG
Sbjct: 254 LEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYAT 313
Query: 166 ------------------------------CVVSRR--LEDAWKVFDEMLKRRLQPTLVT 193
C +++ +E+A +F++M ++ L P +V+
Sbjct: 314 KGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVS 373
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
FG LI LC RVD+A+ L+ + M V P+ VF+SL+ GLC VG+ A E+
Sbjct: 374 FGALIDALCKLGRVDDAV-LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEV 432
Query: 254 VRNKIEMDA 262
+ I +DA
Sbjct: 433 LDQGICVDA 441
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 106/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++ + M +E I ++++ + P+ + F +I + ++ A+ F++M
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQG-LSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V + F++L+ + T GK ++ +LF +++++ + DA +N LM R+
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ D M++ ++P ++++ TL+ G CL R+DEA KL D+M +KP+ +
Sbjct: 458 MEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLL-DVMVSNGLKPNEFTYTI 516
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L++G C + A EM+
Sbjct: 517 LLRGYCKARRVDDAYSLFREML 538
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P IF + Y + ++E A+ +F++M + V SF L++A+ G++D
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAV 391
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F Q++ + V+P+ ++ L++G + E A ++F E+L + + V F TL+ L
Sbjct: 392 LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNL 451
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
C E RV EA +L + M+RV V+P+ + +L+ G C G + A + MV N ++
Sbjct: 452 CNEGRVMEAQRLIDLMIRV-GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLK 508
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ G + + V + ++ + ++V P + +I + R LEH F +
Sbjct: 58 VVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLIL 117
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V + LL + ++D TD L ++ E PD +YN +++G ++
Sbjct: 118 KTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQV 177
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A+ +F EM+ + + P +VT+ T+I GLC VD A + + M+ VKPD +
Sbjct: 178 EKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMID-RGVKPDNGTYNC 236
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G + G+ + EEM + +E D
Sbjct: 237 LIHGYLSTGKWKEVVQMLEEMSTHGLEPD 265
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 98/194 (50%), Gaps = 11/194 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF----CNVISFYGRARLLEH 105
N+ + ++ L +++ +++ ++ D + + + F CN+ + R++E
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVL-DQGICVDAVFFNTLMCNLCN---EGRVME- 459
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A ++ D M V+ V S+NTL+ G+ID L +M + P+ +Y IL+
Sbjct: 460 AQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLR 519
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +RR++DA+ +F EML + + P + T+ T+++GL R EA +L +M+ K
Sbjct: 520 GYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINS-RTK 578
Query: 225 PDAQVFASLIKGLC 238
D + ++ GLC
Sbjct: 579 CDIYTYNIILNGLC 592
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEK----YVSPD 155
L+ AL++FDE+ +V++FN LL + G +R+ LF M + V+P+
Sbjct: 30 LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89
Query: 156 ACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
AC+Y+IL+ GC RLE + F +LK + ++ L+ GLC RVDEA +
Sbjct: 90 ACTYSILI-GCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDIL 148
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
M + PD + ++I G G++ A EM+ I
Sbjct: 149 LLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGI 192
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 3/198 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y+ ++ DE ++L + + + P E + ++ Y +AR ++ A
Sbjct: 473 RPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNG-LKPNEFTYTILLRGYCKARRVDDAY 531
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+F EM V V ++NT+L+ + G+ +L+ ++ D +YNI+++G
Sbjct: 532 SLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGL 591
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +++A+K+F + + Q VTF +I L R ++A+ L + Y + PD
Sbjct: 592 CKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFA-TISAYGLVPD 650
Query: 227 AQVFASLIKGLCAVGELS 244
+ + + L G L
Sbjct: 651 VVTYRLIAENLIEEGSLG 668
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P I + +++ + ++ A ++ D M S ++ ++ LL ++D
Sbjct: 472 VRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAY 531
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++ K V+P +YN ++HG + R +A +++ M+ R + + T+ ++ GL
Sbjct: 532 SLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGL 591
Query: 202 CLELRVDEALKL 213
C VDEA K+
Sbjct: 592 CKNNFVDEAFKM 603
>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I +L A+ F +V+++L + + + R + F +I YG A E A++
Sbjct: 74 YGLMIDRLAGARRFGDVEELLARARAE-RFRFSDDFFYRLIKMYGNVANHPEKAMETLYA 132
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
MS + + K+FN +L+ ++ + + + +++ + V D C +NIL+ G R
Sbjct: 133 MSEYGCWPSTKTFNYVLHMLVCRRQYEVVHEVYSSAPRLGVELDTCCFNILIKGLCQFGR 192
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+A + DEM K+ +P +T+ TL++ LC RVDEA +L E MR + D V+
Sbjct: 193 FNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELFE-RMRKEEIDADTVVYN 251
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
L+ GLC G ++ A + M
Sbjct: 252 ILVSGLCREGRVTSAYDLFKSM 273
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 5/187 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
++++I L + F+E +L ++ K D R P + + ++ F R ++ A ++F+
Sbjct: 180 FNILIKGLCQFGRFNEALSLLDEMPKQDCR--PNAMTYSTLMHFLCRNCRVDEAFELFER 237
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M + +N L++ + G++ DLF+ M + P++ +Y +L+ G V S+
Sbjct: 238 MRKEEIDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKN 297
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+A + M L+P+ ++ LI G C +D+A + + M+ V P +
Sbjct: 298 FVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLDDAHHVLKQMVDQGFV-PRMSTWT 356
Query: 232 SLIKGLC 238
L+ LC
Sbjct: 357 KLLTSLC 363
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
+GR AL + DEM + + +++TL++ + ++D +LF+ M K + D
Sbjct: 190 FGR---FNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELFERMRKEEIDAD 246
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
YNIL+ G R+ A+ +F M + P T+ L+ GL EA L
Sbjct: 247 TVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKNFVEAKDLV- 305
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
MM +++P + LI G C+V L A ++MV
Sbjct: 306 GMMSAESLRPSFSSYKLLIDGFCSVNCLDDAHHVLKQMV 344
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L +++ +E + +L ++ + P +++ N+I + R + A ++ EM
Sbjct: 190 YGALINGLCKSRRSNEAKALLDEMSC-AELKPNVVVYANLIDGFMREGNADEAFKMIKEM 248
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ VQ +++ L+ + G++DR + L Q++ PD +YN+++ G
Sbjct: 249 VAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNK 308
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA+++ EM + P + T+ +I+GLC ++A L E+ M +KP+A V+A
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEE-MTTKGLKPNAFVYAP 367
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
LI G C G +SLA ++M +
Sbjct: 368 LISGYCREGNVSLACEIFDKMTK 390
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 2/176 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + +I Y + R + A +V EM ++N L+ + G ++
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ ME Y + PD +Y L++G SRR +A + DEM L+P +V + LI G
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
E DEA K+ ++M+ V+P+ + +L++GLC +G++ A ++MVR+
Sbjct: 233 MREGNADEAFKMIKEMVAA-GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 2/195 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E + L Q DT + P ++I+ +++ Y ++ +E F M V + + L
Sbjct: 449 ESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGIL 508
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ + + G ++ + +EK S PD Y+ L+ G + E A+ + DEM K+ +
Sbjct: 509 IHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGV 568
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +V + LI GLC + A + ++ + P+ + SLI G C VG++S A
Sbjct: 569 DPNIVCYNALIDGLCKSGDISYARNVFNSIL-AKGLVPNCVTYTSLIDGSCKVGDISNAF 627
Query: 248 GFKEEMVRNKIEMDA 262
EM+ I DA
Sbjct: 628 YLYNEMLATGITPDA 642
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 111/246 (45%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L ++ ++ +L ++ + P ++ +IS Y R + A ++
Sbjct: 326 NVYTYSIMIHGLCQSGEPEKASDLLEEMT-TKGLKPNAFVYAPLISGYCREGNVSLACEI 384
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FD+M+ NV + +N+L+ + G+++ T F Q+ E+ + P+ +Y+ L+HG +
Sbjct: 385 FDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF---------------------------------- 194
+ LE A ++ ML L+P V +
Sbjct: 445 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 504
Query: 195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G LI+ L ++ A ++ ++ + +V PD V++SLI GLC + A G +EM
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 563
Query: 254 VRNKIE 259
+ ++
Sbjct: 564 SKKGVD 569
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + YD ++ L + D +L Q+ D+ P+ I + +I + R + A ++
Sbjct: 256 NKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHR-PDTITYNLIIEGHFRHHNKKDAFRL 314
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
EM + + V +++ +++ + G+ ++ +DL + M K + P+A Y L+ G
Sbjct: 315 LSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCR 374
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A ++FD+M K + P L + +LI+GL RV+E+ K M + P+
Sbjct: 375 EGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE-RGLLPNEF 433
Query: 229 VFASLIKGLCAVGELSLA 246
++ LI G G+L A
Sbjct: 434 TYSGLIHGYLKNGDLESA 451
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 68 DEVQQILHQLKH--DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
D+++++ K D V+ + I+ +I + +E A +V E+ V +
Sbjct: 481 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVY 540
Query: 126 NTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++L++ + C DR L ++ +K V P+ YN L+ G S + A VF+ +
Sbjct: 541 SSLISGL--CKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 598
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + L P VT+ +LI G C + A L +M+ + PDA V++ L G + G+
Sbjct: 599 LAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLAT-GITPDAFVYSVLTTGCSSAGD 657
Query: 243 LSLALGFKEEM 253
L A+ EEM
Sbjct: 658 LEQAMFLIEEM 668
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + + ++L +++ + V P+ ++ ++IS + E A + DEM
Sbjct: 505 YGILIHNLSSSGNMEAAFRVLSEIEKNGSV-PDVHVYSSLISGLCKTADREKAFGILDEM 563
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------------------- 145
S V + +N L++ + G I ++F
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623
Query: 146 --------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+++ ++PDA Y++L GC + LE A + +EM R ++ +F L
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNL 682
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ G C ++ E LKL +M + P+A ++I GL G+LS
Sbjct: 683 VDGFCKRGKMQETLKLLHVIMG-RGLVPNALTIENIISGLSEAGKLS 728
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L R+ +E ++ D +VP+ + +I+ ++R A +
Sbjct: 151 NTVTYNVLIAGLCRSGAVEEAFGFKKDME-DYGLVPDGFTYGALINGLCKSRRSNEAKAL 209
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEMS ++ V + L++ + G D + +++ V P+ +Y+ L+ G
Sbjct: 210 LDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCK 269
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A + +M++ +P +T+ +I G +A +L +M + P+
Sbjct: 270 MGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENA-GISPNVY 328
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +I GLC GE A EEM ++ +A
Sbjct: 329 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 362
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
T + P+ ++ + + A LE A+ + +EM ++ SFN L++ GK+
Sbjct: 636 TGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMF-LRGHASISSFNNLVDGFCKRGKMQE 694
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L IM + + P+A + ++ G + +L + +F E+ ++ + F +L
Sbjct: 695 TLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFM 754
Query: 200 GL------------------CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ C E +D+AL L+ D++ + + +++ LC G
Sbjct: 755 DMINQGKIPLDVVDDMIRDHCKEGNLDKALMLR-DVIVAKSAPMGCSSYLAIVDNLCRKG 813
Query: 242 ELSLALGFKEEM 253
+LS AL +EM
Sbjct: 814 KLSEALNLLKEM 825
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWK 177
R+ + L++ G++ ++ +M ++ ++P N L+ + + + WK
Sbjct: 44 HRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWK 103
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
V + M+ + P + T+ TLI C D A K+ + MR + + LI GL
Sbjct: 104 VREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVE-MRERGCGLNTVTYNVLIAGL 162
Query: 238 CAVGELSLALGFKEEM 253
C G + A GFK++M
Sbjct: 163 CRSGAVEEAFGFKKDM 178
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + K P E+ CN VI Y RA HA ++ DE
Sbjct: 332 YCMLINGLGSMERLDEALKYFQLSKESG--FPMEVPTCNAVIGAYCRALEFHHAFKMVDE 389
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
M + ++++ +LN ++ KI+ +LFQ ME+ P+ +Y +++ + R
Sbjct: 390 MRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNER 449
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A KV+ +M ++ + P + F LI GLC + R++EA ++M+ ++P Q+F+
Sbjct: 450 VDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLD-KGIRPPGQLFS 508
Query: 232 SLIKGLCAVGELSLA 246
+L + L G ++LA
Sbjct: 509 NLKEALVEGGRITLA 523
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 15/245 (6%)
Query: 8 SPFRLASLLR-LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
SP +A +L+ L LAL F+ A+ + FRY+ + +I LG+ K
Sbjct: 119 SPQLVAEVLKNLSNAGILALAFFR---------WAERQQGFRYSAEGFHNLIEALGKIKQ 169
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F V ++ ++ R + F ++ Y RAR ++ A++ F++MSSF ++ + +N
Sbjct: 170 FRLVWSLVEAMR--CRSCLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYN 227
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
L++ + ++ + +F+ M++ PD +Y +LM G + L V+ EML
Sbjct: 228 WLIDILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLD 287
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P +V +G LI C + DEA+K+ +M P V+ LI GL ++ L
Sbjct: 288 AGIKPDVVAYGMLISAFCKSGKCDEAIKVFHEMEE-SGCMPSPHVYCMLINGLGSMERLD 346
Query: 245 LALGF 249
AL +
Sbjct: 347 EALKY 351
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I+ ++ DE ++ H+++ ++ +P ++C +I+ G L+ AL+
Sbjct: 293 DVVAYGMLISAFCKSGKCDEAIKVFHEME-ESGCMPSPHVYCMLINGLGSMERLDEALKY 351
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F V + N ++ A + + M K + P+ +Y+I+++ +
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S ++E+A+ +F M + +P L T+ ++ C RVD ALK+ + M+ V P
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMVGMFCSNERVDMALKVWKQ-MKEKGVLPCMH 470
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+F++LI GLC L A + +EM+ I
Sbjct: 471 MFSALINGLCFDNRLEEACVYFQEMLDKGI 500
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++I T + M DE I +++K + P+ + + +I + ++ A+ F++M
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQG-LSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V + FN+L+ + T K ++ + F+++ + + PD +N ++ ++
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++ D M + +P ++++ TLI G CL R+DEA K + M+ V +KPD + +
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSV-GLKPDEWTYNT 558
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
L+ G C G + A G EM+RN I
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGI 584
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 4/215 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEII-FCNVISFYGRARLLEHAL 107
+++ Y+ ++ K +E ++LH + R P ++ + VI+ + ++ A
Sbjct: 164 DVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAY 223
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+F EM +Q V ++ T+++ + +DR +FQ M +K V PD +YN L+HG
Sbjct: 224 NLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGY 283
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + ++ ++ +EM L+P T+G+L+ LC R EA L + M+R +KP+
Sbjct: 284 LSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIR-KGIKPN 342
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI G G LS MV N + D
Sbjct: 343 VAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 12/216 (5%)
Query: 49 YN-LLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
YN L+H L I K +M +E+ H LK D + N + GR R A
Sbjct: 276 YNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLL---NYLCNNGRCR---EA 327
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+FD M ++ V + L++ T G + M DL +M E +SPD +NI+
Sbjct: 328 RFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+++A +F++M ++ L P +V +G LI LC RVD+A+ LK + M V P
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAV-LKFNQMMNEGVAP 446
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ VF SL+ GLC V + A F EM+ I D
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPD 482
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N + Q L P ++++Y +I L + D+ +Q+ ++ V P +F +++
Sbjct: 402 NKMKQQGLSP---DVVNYGALIDALCKLGRVDDAVLKFNQMMNEG-VAPNIFVFNSLVYG 457
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD 155
E A + + EM + ++ V FNT+L + T G++ + L +ME+ + P
Sbjct: 458 LCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPG 517
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
SY L+ G + R+++A K D ML L+P T+ TL++G C R+D+A +
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577
Query: 216 DMMRVYNVKPDAQVFASLIKGL 237
+M+R + P +++++ GL
Sbjct: 578 EMLR-NGITPGVVTYSTILHGL 598
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 90/174 (51%), Gaps = 9/174 (5%)
Query: 47 FRYNLLHYDL-IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
F +N L Y L + K +AK F + + ++ D VV I CN+ + + ++++
Sbjct: 449 FVFNSLVYGLCTVDKWEKAKEF-YFEMLNQGIRPD--VVFFNTILCNLCT---KGQVMK- 501
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A ++ D M + V S+ TL+ G+ID +M + PD +YN L+H
Sbjct: 502 AQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLH 561
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
G + R++DA+ VF EML+ + P +VT+ T+++GL R EA +L +M+
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTD------LFQIMEK----Y 151
L+ AL++FD + + +V +FN LL A+ G+ T+ LF M +
Sbjct: 30 LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89
Query: 152 VSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
V+PD C+Y+IL+ GC RLE + F +LK + + L+ GLC R+ EA
Sbjct: 90 VTPDPCTYSILI-GCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEA 148
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ + M PD + +L+KG C
Sbjct: 149 MDILVKRMPELGCTPDVVSYNTLLKGFC 176
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 79/169 (46%), Gaps = 9/169 (5%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E + ++ Y RA ++ A VF EM + V +++T+L+ + T + +L
Sbjct: 551 PDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKEL 610
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ++ + YNI+++G + +++A+K+F + + Q + TF +I L
Sbjct: 611 YLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFK 670
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
R ++A+ L + Y + PD + C + E + G+ EE
Sbjct: 671 SGRNEDAMHLFA-TISSYGLVPDVFTY-------CLIAENLIEEGYLEE 711
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 89/207 (42%), Gaps = 6/207 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP + Y+ ++ RA D+ + ++ + + P + + ++ R
Sbjct: 549 LKPDEWT---YNTLLHGYCRAGRIDDAYGVFREMLRNG-ITPGVVTYSTILHGLFTTRRF 604
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
A +++ M + Q + +N +LN + +D LFQ + K + ++NI+
Sbjct: 605 SEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIM 664
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ S R EDA +F + L P + T+ + L E ++E L M +
Sbjct: 665 IGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS-G 723
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGF 249
P++++ +L++ L G+++ A +
Sbjct: 724 TTPNSRMLNALVRRLLHRGDITRAGAY 750
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F N++ + + + A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M V PD +Y++L++G ++++A ++F+EML R L P VTF TLI C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHC 252
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VD A+++ + M+ PD + +LI GLC G+L +EM N ++ D
Sbjct: 253 KNGMVDSAMEIYKQMLS-QGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPD 310
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 107/218 (49%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + DE ++ +++ D +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKVDEANELFNEML-DRGLVPNGVTFTTLIDVHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
+++ A++++ +M S + ++NTL+ + G + ++ L M + PD +
Sbjct: 254 NGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC LE A++ M+K ++ V + L+ GLC E R D+A K+ +M+
Sbjct: 314 YTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ A +EM R+
Sbjct: 374 SV-GLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRD 410
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + V P+ + +I+ + ++ A ++F+EM + +F TL++ G +
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMV 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ Q++ + SPD +YN L++G L+ + DEM L+P +T+ TL
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C E ++ A + ++ M++ +++ D + +L+ GLC G A EM+
Sbjct: 318 IDGCCKEGDLETAFEFRKRMIK-ESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVG 376
Query: 258 IEMD 261
++ D
Sbjct: 377 LKPD 380
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 5/182 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y+ + T LGR K + + ++K D P +I N+ IS YGRA ++ A+++F+E
Sbjct: 433 YNTVFTALGRLKQVSHIHDLYEKMKQDGP--PPDIFTYNILISSYGRAGRVDSAVKIFEE 490
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
+ + N Q V S+N+L+N + G +D F+ M EK ++PD +Y+ L+ + +
Sbjct: 491 LENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLIECFGKTDK 550
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A +FDEM+ P LVT+ L+ L R EA+ L ++ + PD+ +A
Sbjct: 551 VEMACSLFDEMIAEGCSPNLVTYNILLDCLERSGRTAEAVDLYAK-LKQQGLTPDSITYA 609
Query: 232 SL 233
L
Sbjct: 610 VL 611
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 117/270 (43%), Gaps = 43/270 (15%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P +P + +L+ K+P LA + F + P+ N PF YN L L +++
Sbjct: 88 PLTPLEASLILKSLKNPTLAFKFF-HFCPSLKN------DPFIYNRLF--LTLSRSSSQL 138
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYG-------------------------- 98
F++ + +L + + R V I N+ I F+G
Sbjct: 139 RFEQTESLLDDM--EKRGVKGSISTVNILIGFFGDLDRCVGLVKKWGLRFNAYSYKCLLQ 196
Query: 99 ---RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSP 154
R R + A V+ +M + +FN LL+A+ K+D+ +F+ M++ + P
Sbjct: 197 GYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEP 256
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D +Y I++ + + +++ +F ML++ L+ + T+I L D+A+ L
Sbjct: 257 DTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLF 316
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
M+ +P+ ++ L+ L A G+L+
Sbjct: 317 SKMVE-NGCQPNEFTYSVLLNVLVAEGQLN 345
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
E + D+M V+ ++ + N L+ G +DR L + + + +A SY L
Sbjct: 140 FEQTESLLDDMEKRGVKGSISTVNILIGFF---GDLDRCVGL--VKKWGLRFNAYSYKCL 194
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + R + A+ V+ +ML+ + F L+ L + +VD+A K+ EDM R +
Sbjct: 195 LQGYLRLRDCDKAFGVYLDMLRCGYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRH- 253
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD + +I+ G+ +L + M+ ++
Sbjct: 254 CEPDTFTYTIMIRMTGKAGKTDESLALFQAMLEKGFTLN 292
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 95/202 (47%), Gaps = 6/202 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ +++++ L + + D+ ++ +K P+ + +I G+A + +
Sbjct: 219 YSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKR-RHCEPDTFTYTIMIRMTGKAGKTDES 277
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
L +F M + ++NT++ A+ D+ LF +++E P+ +Y++L++
Sbjct: 278 LALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNV 337
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
V +L + EM K+ + + + + L EA +L +M V++ K
Sbjct: 338 LVAEGQLNKLDNIV-EMSKKYMNKQIYAY--FVRTLSKLGHSSEAHRLFCNMWNVHD-KG 393
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
D + S+++ LC+ G+++ A+
Sbjct: 394 DKDAYMSMLESLCSSGKIAEAI 415
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I G+A DE L Q + I + +I + R+ + A+ +F +M
Sbjct: 261 YTIMIRMTGKAGKTDE-SLALFQAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKM 319
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI-----LMHGCVV 168
Q +++ LLN ++ G+++++ ++ ++ +KY++ +Y + L H
Sbjct: 320 VENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEA 379
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
R + W V D+ K + +++ LC ++ EA+ L
Sbjct: 380 HRLFCNMWNVHDKGDKD-------AYMSMLESLCSSGKIAEAIDL 417
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 97/178 (54%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F ++S Y R L+ ++ M + VQ V +++ L+N + K+D +L
Sbjct: 169 PSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++ + P+ ++ L+ G + R++ A +++ ++L + P L+T+ TLI+GLC
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCK 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L D M + +KPD + +LI G C G+L A +++ M++ I +D
Sbjct: 289 KGDLKQARDLI-DEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLD 345
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ + ++ +V SFNTL++ + G +D
Sbjct: 133 PASLYFFNILMHRFCKEGEMRL---AQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD +Y++L++G ++++A ++F+EML L P VTF TLI
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD A+++ + ++ PD + +LI GLC G+L A +EM +++
Sbjct: 250 GHCKNGRVDLAMEIYKQLLS-QGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + DE ++ +++ D +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDEANELFNEML-DNGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ ++ S + ++NTL+ + G + + DL M K + PD +
Sbjct: 254 NGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M+K ++ V + LI GLC E R +A K+ M+
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 374 SV-GLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRD 410
>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Glycine max]
Length = 827
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I + D+ ++++ + ++ + P I + ++ + EHA +
Sbjct: 465 SLVSYNHMILGHCKKGCMDDAHEVMNGII-ESGLKPNAITYTILMEGSFKKGDCEHAFNM 523
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
FD+M + + T +FN+++N + G++ D L +++ P + +YN ++ G V
Sbjct: 524 FDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVK 583
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A V+ EM + + P ++T+ +LI G C ++D ALK+ +DM R ++ D
Sbjct: 584 EGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKR-KGLELDIT 642
Query: 229 VFASLIKGLCAVGELSLALGF 249
V+A+LI G C + ++ A F
Sbjct: 643 VYATLIAGFCKMQDMENACKF 663
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ + P I++ +IS Y +E AL + EM + + +K + +L++ +L GK+
Sbjct: 669 EVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLS 728
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DL+ +++ + + PD YN+L++G +LE+A K+ EM + PT++ + TLI
Sbjct: 729 FALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLI 788
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
G E + EA +L ++M+ + PD + L+ G
Sbjct: 789 AGHFKEGNLQEAFRLHDEMLD-KGLVPDDTTYDILVNG 825
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 3/208 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ II + D + + ++ + + P I + ++I+ + ++ ++ AL++ D
Sbjct: 572 MTYNCIIDGYVKEGAIDSAESVYREMCR-SEISPNVITYTSLINGFCKSNKMDLALKMHD 630
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSR 170
+M ++ + + TL+ ++ F +++E ++P+ YNI++
Sbjct: 631 DMKRKGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLN 690
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+E A + EM+ ++ L + +LI GL E ++ AL L +M+ + PD ++
Sbjct: 691 NMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEML-CRGIVPDIFMY 749
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
LI GLC G+L A +EM N I
Sbjct: 750 NVLINGLCNHGQLENAGKILKEMDGNNI 777
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 6/222 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A + P Y ++ II L + E + L+ + +P + + +I Y +
Sbjct: 529 AAGIVPTDYT---FNSIINGLCKVGRVSEARDKLNTFIKQS-FIPTSMTYNCIIDGYVKE 584
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A V+ EM + V ++ +L+N K+D + M+ K + D Y
Sbjct: 585 GAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVY 644
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ G + +E+A K F ++L+ L P + + +I ++ AL L ++M+
Sbjct: 645 ATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMIN 704
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D +++ SLI GL G+LS AL EM+ I D
Sbjct: 705 -NKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPD 745
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDE 112
++ ++ RA E + + D VVP + F NV+ + R ++E A ++FDE
Sbjct: 155 FNYLLISYVRANKITEAVECFRAMLEDG-VVPW-VPFVNVLLTAMIRRNMVEDAHRLFDE 212
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M+ + + L+ A L GK F Q + + DA SY+I++
Sbjct: 213 MAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSD 272
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPDAQVF 230
L+ A K+ + + P+ T+ +I G C+ L EAL+LK++M+ V + V
Sbjct: 273 LDLASKLVEGDEELGWVPSEGTYAAVI-GACVRLGNFGEALRLKDEMVD-SRVPVNVAVA 330
Query: 231 ASLIKGLCAVGELSLALGFKEEMVR 255
SLIKG C G+++ AL +E+V
Sbjct: 331 TSLIKGYCVRGDVNSALRLFDEVVE 355
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 3/163 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I ++ + + LLE+A + D + V ++N +L + GK++ +L
Sbjct: 395 PTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVV-TYNIVLLWLCELGKVNEACNL 453
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +++ K ++P SYN ++ G ++DA +V + +++ L+P +T+ L+ G
Sbjct: 454 WDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFK 513
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ + A + D M + P F S+I GLC VG +S A
Sbjct: 514 KGDCEHAFNMF-DQMVAAGIVPTDYTFNSIINGLCKVGRVSEA 555
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 15/197 (7%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
++FDEV ++ V P IF +I + + +E A +++ M +Q TV
Sbjct: 348 RLFDEVVEV--------GVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFI 399
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS---YNILMHGCVVSRRLEDAWKVFDE 181
N LL K + + + + +++ V S YNI++ ++ +A ++D+
Sbjct: 400 LNFLLKGFR---KQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDK 456
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M+ + + P+LV++ +I G C + +D+A ++ ++ +KP+A + L++G G
Sbjct: 457 MIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIE-SGLKPNAITYTILMEGSFKKG 515
Query: 242 ELSLALGFKEEMVRNKI 258
+ A ++MV I
Sbjct: 516 DCEHAFNMFDQMVAAGI 532
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 108/201 (53%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + M D +L+++K + P+ I + ++I G+ E +F EM
Sbjct: 216 YNIVIDAFCKDGMLDGATSLLNEMKQKN-IPPDIITYTSLIDGLGKLSQWEKVRTLFLEM 274
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
N+ V +FN++++ + GK++ ++ M EK V P+ +YN++M G + ++
Sbjct: 275 IHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQM 334
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++FD M+ + ++P ++++ LI G + ++D+A++L ++ + +KP +
Sbjct: 335 GRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQ-NGLKPSIVTCSV 393
Query: 233 LIKGLCAVGELSLALGFKEEM 253
L++GL VG A F +EM
Sbjct: 394 LLRGLFEVGRTECAKIFFDEM 414
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 79 HDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCG 136
H + +P E+ F +I ++ A+ +F ++ N+ + + T+++ + G
Sbjct: 133 HFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKG 192
Query: 137 KIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ DL ++ME+ ++ PD C YNI++ L+ A + +EM ++ + P ++T+
Sbjct: 193 HTQKAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYT 252
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+LI GL + ++ L +M+ + N+ PD F S+I GLC G++ A M+
Sbjct: 253 SLIDGLGKLSQWEKVRTLFLEMIHL-NIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIE 311
Query: 256 NKIE 259
+E
Sbjct: 312 KGVE 315
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 2/218 (0%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K YN + + +I L + + +L + P+E+++ V+ + +
Sbjct: 136 KGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQ 195
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + M + +N +++A G +D T L M +K + PD +Y L+
Sbjct: 196 KAFDLLRLMEQGITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLI 255
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + E +F EM+ + P + TF ++I GLC E +V++A ++ M+ V
Sbjct: 256 DGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIE-KGV 314
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P+ + ++ G C G++ A + M+ IE D
Sbjct: 315 EPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPD 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-D 155
+ + L+ A +F +M + + SF+ LL A++ + +F+ + K P D
Sbjct: 47 FENVKCLDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVD 106
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A + + +++ C + R + + V K+ + VTF TLI GL E +V +A+ L +
Sbjct: 107 AFALSTVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFK 166
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++R +PD ++ +++ GLC G A
Sbjct: 167 KLVRENICEPDEVMYGTVMDGLCKKGHTQKAF 198
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHAL 107
+++ Y +I K D+ Q+ ++ + + I+ C+V+ + R E A
Sbjct: 352 DIISYTALINGYVEKKKMDKAMQLFREISQNG--LKPSIVTCSVLLRGLFEVGRT-ECAK 408
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS-YNILMHGC 166
FDEM + + + TLL G ++ F +E+ Y +++G
Sbjct: 409 IFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGL 468
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NV 223
+ +L+ A F+++ L P ++T+ +I G C E +DEA +DM+R
Sbjct: 469 CKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA----KDMLRKMEDNGC 524
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + + +++G ++S F +E+ +A
Sbjct: 525 LPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEA 563
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 203 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 251
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A ++ D+M ++ + ++N+L+N ++D+ +
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 312 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 371
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 372 DGDCDNAQKVFKQMVS-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 428
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 105/190 (55%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 148 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 207 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 266
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+ D+M+KR + P + T+ +LI G C+ R+D+A ++ E M + PD
Sbjct: 267 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE-FMVSKDCFPDLD 325
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 326 TYNTLIKGFC 335
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 322 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 381
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 382 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 441
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 442 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 476
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 4/168 (2%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVS 153
+G+ L+ A+ +F M ++ FN LL+A+ K D + L ++M+
Sbjct: 17 WGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYE 76
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P + + L++G +R+ DA + D+M++ +P +TF TLI+GL L + EA+ L
Sbjct: 77 PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVAL 136
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ M++ +P+ + ++ GLC G++ LA +M KIE D
Sbjct: 137 VDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD 183
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N EA ++ +++ ++ II L + + D+ + +++ + P + + ++IS
Sbjct: 173 NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEMET-KGIRPNVVTYSSLISC 228
Query: 97 ---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYV 152
YGR A Q+ +M + + +FN L++A + GK L M ++ +
Sbjct: 229 LCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 285
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD +YN L++G + RL+ A ++F+ M+ + P L T+ TLI G C RV++ +
Sbjct: 286 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 345
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L +M + D + +LI+GL G+ A ++MV + + D
Sbjct: 346 LFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 393
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMH 164
+L + +M + ++ + ++LLN +I D + + Q++E PD ++ L+H
Sbjct: 63 SLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 122
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + + +A + D M++R QP LVT+G ++ GLC +D A L + M ++
Sbjct: 123 GLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL-NKMEAAKIE 181
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
D +F ++I LC + AL +EM
Sbjct: 182 ADVVIFNTIIDSLCKYRHVDDALNLFKEM 210
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 106/215 (49%), Gaps = 11/215 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQI-----LHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
++ ++ +++ + + K FD V + + +L ++ P + ++++ Y + +
Sbjct: 41 SIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYE----PSIVTLSSLLNGYCHGKRIS 96
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ + D+M + +F TL++ + K L +++++ P+ +Y +++
Sbjct: 97 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 156
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G ++ A+ + ++M +++ +V F T+I LC VD+AL L ++ M +
Sbjct: 157 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKE-METKGI 215
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+P+ ++SLI LC+ G S A +M+ KI
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 362 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 420
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 421 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 480
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 481 QEAYALLKKMKEDGPLPDSGTYNTLI 506
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 108/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + Q+L +++ + P +++ +I + +L+ A++
Sbjct: 81 DVITYSTIINGLCKMGSTTMAIQLLKKME-EKGCKPNVVVYSTIIDSLCKDKLITEAMEF 139
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + + V +++++L+ G+ + T LF Q++E+ V PD ++NIL+ G
Sbjct: 140 LSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSK 199
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A VF+ M+++ ++P + T+ L+ G C + ++DEA KL M+R P +
Sbjct: 200 EGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVR-KGCAPSVR 258
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LIKG C G + A G EM + D
Sbjct: 259 SYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDT 292
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L + M E Q + + + V P + ++ Y ++ A ++F+ M
Sbjct: 190 FNILVDGLSKEGMILEAQCVFETMI-EKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIM 248
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+V+S+N L+ G+ID L ++ K ++PD +Y+ LM G R
Sbjct: 249 VRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRP 308
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DA K+ +EM L P L+T+ ++ GLC + +DEA +L + M+ ++P+ ++
Sbjct: 309 QDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLK-AMQESKIEPNIFIYTI 367
Query: 233 LIKGLCAVGELSLA 246
LI+G+C G+L A
Sbjct: 368 LIQGMCNFGKLEAA 381
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 105/210 (50%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I ++ DE + +L ++ H + P+ + + ++ + + + A ++ +EM
Sbjct: 260 YNILIKGHCKSGRIDEAKGLLAEMSHKA-LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEM 318
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
S+ + + +++ +L+ + G +D +L + M E + P+ Y IL+ G +L
Sbjct: 319 RSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A ++F + + +QP +VT+ +I GL +EA +L D M V+ P++ +
Sbjct: 379 EAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRD-MAVHGCLPNSCTYNV 437
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+I+G G+ S A EEMV D+
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGRGFSADS 467
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 4/177 (2%)
Query: 85 PEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F ++ +A++++ A+++FDEM + V +++T++N + G
Sbjct: 45 PNHVTFSTLLNGLSSKAKIID-AVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQ 103
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + M EK P+ Y+ ++ + + +A + EM+ R + P +VT+ ++++G C
Sbjct: 104 LLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFC 163
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R +EA L + M+ NV PD F L+ GL G + A E M+ +E
Sbjct: 164 NLGRSNEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVE 219
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A V M +Q +F+TLLN + + KI LF M K PD +Y+ +++
Sbjct: 31 AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G A ++ +M ++ +P +V + T+I LC + + EA++ +M+ +
Sbjct: 91 GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVN-RGIS 149
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P+ ++S++ G C +G + A ++MV + D
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 152 VSPDACSYNILMHGCVVSRRLED---AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ PD + IL++ C + A+ V M K LQP VTF TL+ GL + ++
Sbjct: 6 IRPDVYTLTILIN-CFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKII 64
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+A+KL ++M+++ +PD ++++I GLC +G ++A+ ++M
Sbjct: 65 DAVKLFDEMVKM-GYEPDVITYSTIINGLCKMGSTTMAIQLLKKM 108
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + DE ++L ++ ++++ P I+ +I LE A ++
Sbjct: 326 DLMTYSIVLDGLCKQGHLDEAFELLKAMQ-ESKIEPNIFIYTILIQGMCNFGKLEAAREL 384
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
F + +Q V ++ +++ +L G + +LF+ M + P++C+YN+++ G +
Sbjct: 385 FSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF 194
+ +A ++ +EM+ R TF
Sbjct: 445 NGDTSNAGRLIEEMVGRGFSADSSTF 470
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
N + Y ++ L + + DE +L L TR P+ + + VI +A L A+
Sbjct: 218 NAITYSALVDGLCKCERLDEAVALL--LGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAV 275
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+F+EMS T ++N+L+ G +D L ++++ +PD +Y LM
Sbjct: 276 DIFEEMS---CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAF 332
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
RL+DA+++F +M+ +L P +VTF +L+ GLC E R+++AL+L E++ R P
Sbjct: 333 CKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITR-RGCPPT 391
Query: 227 AQVFASLIKGLC 238
+ ++ G C
Sbjct: 392 IYTYNCVVDGYC 403
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 102/210 (48%), Gaps = 6/210 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +++ Y +I L +A + I ++ P I + ++I Y RA ++
Sbjct: 249 RGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----CAPTAITYNSLIGGYCRAGDMD 304
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A+++ +M N V ++ TL++A G++D +LFQ M +SPD ++ L+
Sbjct: 305 EAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLV 364
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+EDA ++ +E+ +R PT+ T+ ++ G C +V +A +L D R
Sbjct: 365 DGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVAD-FRSRGF 423
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
P+ + L+ G C G AL + +++
Sbjct: 424 VPNTVTYNILVAGCCRAGRTDQALQYLDQL 453
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 7/214 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ L Y ++ L +A + Q+L ++ R VP+ V+ ++ A ++
Sbjct: 148 DFLTYTKLVHGLSKAGRLRDAVQVLQEMV-SARHVPDNTTLTVVVQSLCLGDRVDDAREL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCV 167
+EM + +++ L++ + C ++D L ++ + +PD +Y+ ++ G
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLC 266
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ RL DA +F+EM PT +T+ +LI G C +DEA++L M+ N PD
Sbjct: 267 KAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVD-DNCAPDV 322
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +L+ C +G L A ++MV NK+ D
Sbjct: 323 ITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 356
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 15/209 (7%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
YNL+H L +A++ DE +L +K + P ++ VI RA L HAL
Sbjct: 84 YNLIH------PLCKARLLDEAMGLLLDMK-SRGMNPGTLLHNVVIGGLCRAGRLRHALG 136
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMH 164
V+ +M+ + + ++ L++ + K R+ D Q++++ VS PD + +++
Sbjct: 137 VYRQMNDAHPPDFL-TYTKLVHGL---SKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQ 192
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ R++DA ++ +EML R + +T+ L+ GLC R+DEA+ L +
Sbjct: 193 SLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFT 252
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD ++++I GLC G L A+ EEM
Sbjct: 253 PDIVTYSTVIDGLCKAGRLRDAVDIFEEM 281
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 89/184 (48%), Gaps = 10/184 (5%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+FD++ + L + H T + N+I +ARLL+ A+ + +M S +
Sbjct: 68 LFDKMAE-LGAVNHTT--------YYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLH 118
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
N ++ + G++ +++ M PD +Y L+HG + RL DA +V EM+
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSA 178
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
R P T ++ LCL RVD+A +L E+M+ + +A +++L+ GLC L
Sbjct: 179 RHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH-RGMAANAITYSALVDGLCKCERLDE 237
Query: 246 ALGF 249
A+
Sbjct: 238 AVAL 241
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
+++ Y +++ + D+ ++ Q+ + ++ P+ + F +++ G R+ E AL+
Sbjct: 321 DVITYTTLMSAFCKMGRLDDAYELFQQMVAN-KLSPDVVTFTSLVDGLCGEGRM-EDALE 378
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ +E++ T+ ++N +++ ++ + +L + P+ +YNIL+ GC
Sbjct: 379 LLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCC 438
Query: 168 VSRRLEDAWKVFDEMLKRRLQ-PTLVT-FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R + A + D++ PT V + ++ LC + R D+A++ E+M++ V P
Sbjct: 439 RAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYV-P 497
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
A FA+++ LC + A EEM++
Sbjct: 498 AAATFATVVFALCKAHQPQQAHELLEEMIK 527
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 2/163 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154
+ A+L + DE+ + NT+L + LF M + +
Sbjct: 19 GLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAV 78
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ +Y L+H +R L++A + +M R + P + +I GLC R+ AL +
Sbjct: 79 NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVY 138
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
M + PD + L+ GL G L A+ +EMV +
Sbjct: 139 RQMNDAH--PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSAR 179
>gi|297841875|ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334660|gb|EFH65078.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 512
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 13/238 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L +L LAL +FK A+ K F++ +Y+ +I LG+ K F + ++
Sbjct: 103 LKKLSNAGVLALSVFK---------WAENQKGFKHTTSNYNALIESLGKIKQFKLIWNLV 153
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+K + + F + Y RAR ++ A+ F +M + + FN +L+ +
Sbjct: 154 DDMKQKKLLSKD--TFALISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDILSK 211
Query: 135 CGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ +F M+K PD SY IL+ G L +V+ EM +P +V
Sbjct: 212 SRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDVVA 271
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+G +I C + DEA++ +M + N KP +F SLI GL + +L+ AL F E
Sbjct: 272 YGIIINAYCKAKKYDEAVRFFNEMEQ-RNCKPSPHIFCSLINGLGSEKKLNDALEFFE 328
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y +II +AK +DE + ++++ P IFC++I+ G + L A
Sbjct: 265 FEPDVVAYGIIINAYCKAKKYDEAVRFFNEMEQ-RNCKPSPHIFCSLINGLGSEKKLNDA 323
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNIL 162
L+ F+ S ++N L+ A RM D F+ ++ K + P+A +Y+I+
Sbjct: 324 LEFFERSKSSGFPLEAPTYNALVGAYCWS---QRMEDAFKTVDEMRSKGIGPNARTYDII 380
Query: 163 MHGCVVSRRLEDAW--------------------------------KVFDEMLKRRLQPT 190
+H + +R ++A+ K++DEM + + P
Sbjct: 381 LHHLIRMQRTKEAYEVYQKMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPG 440
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ F +LI LC E ++DEA + +M+ V ++P +F+ L + L G
Sbjct: 441 MHMFSSLITALCHENKLDEACEYFNEMLDV-GIRPPGHLFSRLKQTLLDEG 490
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 108/208 (51%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I L + DE +++L ++ + ++P + + +I Y + +++ A ++
Sbjct: 333 NVHTYTVLIDGLCKENKMDEARKMLSEMS-EKGLIPSVVTYNALIDGYCKEGMIDDAFEI 391
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
D M S + +++N L+ + K+ + M L +++E+ +SP +YN L+HG
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A+++ M + L P T+ I LC E RV+EA L D ++ VK +
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLF-DSVKAKGVKANEV 510
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
++ +LI G C VG++ +A E M+ +
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLND 538
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 2/173 (1%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
E+ + N+I A + AL++F +M+ N TV+++ L+ A+ G+ +LF
Sbjct: 264 EVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFN 323
Query: 147 IM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M EK P+ +Y +L+ G ++++A K+ EM ++ L P++VT+ LI G C E
Sbjct: 324 EMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+D+A ++ D+M + P+ + + LI GLC ++ A+ +M+ K+
Sbjct: 384 MIDDAFEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 3/205 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K + N + Y +I L A +E ++ + D + + G R
Sbjct: 256 PQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRK 315
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
+E AL +F+EM + V ++ L++ + K+D + M EK + P +YN
Sbjct: 316 VE-ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNA 374
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G ++DA+++ D M P T+ LI GLC + +V +A+ L M+
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE-R 433
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+ P + SLI G C V +L A
Sbjct: 434 KLSPSLITYNSLIHGQCKVNDLESA 458
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 120/278 (43%), Gaps = 39/278 (14%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P ++SL DP+ AL F P F++N+ Y ++ L RA++
Sbjct: 67 TPSHVSSLFAFNLDPQTALSFFNWIALRPG---------FKHNVHSYSSMLNILIRARLL 117
Query: 68 DEVQQI-LHQLKHDTRVVPEEIIFC-----------------------NVISFYGRARLL 103
++I + +K + E+++F ++ + L+
Sbjct: 118 GVAEKIRISMIKSCCSI--EDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLI 175
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNI 161
+ V+ E+ + + + +FN ++N G + +L+ +I++ + PD +Y
Sbjct: 176 DEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVE-AELYASKIVQAGLHPDTFTYTS 234
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G ++ +++A++VF M ++ Q V++ LI+GLC R++EALKL DM
Sbjct: 235 LILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTED- 293
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
N P + + LI L G AL EM E
Sbjct: 294 NCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCE 331
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+L+ Y+ +I G+ K+ D E L L ++ +VP++ + I + +E A
Sbjct: 438 SLITYNSLIH--GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGT 495
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+FD + + V+ + L++ GKID L + ++ P++ +YN+L+ G
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+++++A + +ML ++PT+VT+ LI + + D ALK+ M+ + +PD
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL-GYQPDV 614
Query: 228 QVFASLIKGLCAVGEL 243
+ + + + G L
Sbjct: 615 CTYTAFLHAYFSQGML 630
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 56/263 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y+++I L + K E ++ ++ V P + + +I + +HAL+V
Sbjct: 543 NSYTYNVLIEGLCKEKKMKEASSLVAKML-TMGVKPTVVTYTILIGEMLKDGAFDHALKV 601
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG--- 165
F+ M S Q V ++ L+A + G ++ + D+ M E+ + PD +Y +L+ G
Sbjct: 602 FNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYAR 661
Query: 166 ------------CVV--------------------------------------SRRLEDA 175
C+V + E A
Sbjct: 662 LGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIA 721
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
K+F++M++ + +G LI G C + R++EA L M+ + P ++ SL+
Sbjct: 722 LKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHH-MKERGMSPSEDIYNSLLD 780
Query: 236 GLCAVGELSLALGFKEEMVRNKI 258
C +G + A+ + MV N +
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGL 803
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 9/197 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + Y +I + D +L ++ +D +P + +I + + ++
Sbjct: 503 KGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA-CLPNSYTYNVLIEGLCKEKKMK 561
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A + +M + V+ TV ++ L+ ML G D +F M PD C+Y +
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG---LCLELRVDEALKLKEDMMRV 220
H LE+ V +M + + P LVT+ LI G L L R + LK D
Sbjct: 622 HAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT--- 678
Query: 221 YNVKPDAQVFASLIKGL 237
KP + + LIK L
Sbjct: 679 -GCKPSLYIVSILIKNL 694
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 13/233 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+PF+L LL L D ++ +F+ A K + + Y ++I KLG AK F
Sbjct: 68 TPFQLCKLLLLPLDVSTSMAIFQ---------WAGSQKGYCHTFDVYHVLIDKLGAAKEF 118
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++L Q+K + E + C ++ +YGRA L A ++ +M + + T KS+N
Sbjct: 119 KVIDKLLLQIKEEGIAFRESLFIC-IMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSYN 177
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L+ +++ ++F +++ K V P ++ ++M + +++A + +M K
Sbjct: 178 VVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKH 237
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
P V + TLI+ L RV+EALKL E+M + PD F +I GLC
Sbjct: 238 GCVPNSVVYQTLIHALSKRDRVNEALKLLEEMF-LMGCLPDVDTFNDVIYGLC 289
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N++ Y++++ L + + +L ++ D P+ F +I + E
Sbjct: 444 KGFELNIMGYNVLLRALCKNGKVPKALDMLGEMS-DKGCKPDIFTFNTLIFGLCKVDRKE 502
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILM 163
AL ++ +M V ++NTL++A L G I L M P D +YN L+
Sbjct: 503 DALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLI 562
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
E A +FDEM+++ L P+ ++ LI GLC +V AL+L DM+ +
Sbjct: 563 KAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIH-RGL 621
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + SLI GLC +G + A ++ I+ DA
Sbjct: 622 APDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDA 660
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 48/264 (18%)
Query: 27 QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86
Q+ N P PN+ +H+ ++I ++ DE L+ P+
Sbjct: 333 QVLLNKVPTPND-------------VHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPD 379
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
F +I + L+ A+ + ++MS+ + ++ TLL+ +++ +
Sbjct: 380 VFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLN 439
Query: 147 IME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M K + YN+L+ + ++ A + EM + +P + TF TLI+GLC
Sbjct: 440 EMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVD 499
Query: 206 RVDEALKLKEDMMR--------VYNV--------------------------KPDAQVFA 231
R ++AL L DM+ YN D +
Sbjct: 500 RKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYN 559
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LIK C +G ALG +EMVR
Sbjct: 560 GLIKAFCKLGATEKALGLFDEMVR 583
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQ 108
N + Y+ +I R E ++++ + R P +EI + +I + + E AL
Sbjct: 519 NTVTYNTLIHAFLRGGAIQEALKLVNDMLF--RGCPLDEITYNGLIKAFCKLGATEKALG 576
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+FDEM ++ + S N L+N + GK+ +L + ++ + ++PD +YN L++G
Sbjct: 577 LFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLC 636
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ +A+ +F+++ +QP +T+ TLI C D+A
Sbjct: 637 KMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDA 679
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 83 VVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP I CN+ I+ R + +AL++ +M + V ++N+L+N + G I
Sbjct: 586 LVPSNIS-CNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREA 644
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+LF ++ + + PDA +YN L+ + +DA+ + ++ P VT+ L+
Sbjct: 645 FNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILV 702
>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 102/188 (54%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ I + +I+ YG+AR + AL VF+EM V+ T K++N
Sbjct: 296 YKEVSKIYDQMQR-SGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYN 354
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + +PD CSY ++ V + + A F+ + +
Sbjct: 355 ILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQD 414
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L+P +VT+G LI G +D+ ++ E+ M++ VK + +F +++ +
Sbjct: 415 GLEPNVVTYGALIKGYAKTNNLDKMMEKYEE-MQLRGVKANQTIFTTIMDAYGKNKDFGS 473
Query: 246 ALGFKEEM 253
A+ + +EM
Sbjct: 474 AVIWYKEM 481
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 109/230 (47%), Gaps = 11/230 (4%)
Query: 37 NNTEA-----QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEII 89
NN EA Q P + + + Y +I+ F E +++ L + + + P++ +
Sbjct: 192 NNAEAIFRRMQSSGP-KPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKM 250
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
F +I + +A E A Q+F M+ V ++ ++N+L++ ++ ++ D Q+
Sbjct: 251 FHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNYKEVSKIYD--QMQR 308
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ PD SY +L++ +RR ++A VF+EML ++PT + L+ + V++
Sbjct: 309 SGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 368
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
A + + M R PD + +++ +++ A F + ++ +E
Sbjct: 369 ARTVFKSMRRD-RYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLE 417
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ +N + ++IT G+ F +++L + + VP + ++ YGR +A
Sbjct: 136 WDFNEMDSLMLITAYGKQGNFSAAEKVLSYM-NKMGYVPNVVSHTALMEAYGRGARYNNA 194
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKY-VSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + EK + PD ++++
Sbjct: 195 EAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEEKSPLKPDQKMFHMM 254
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A ++F M +R + + VT+ +L + E E K+ + M R
Sbjct: 255 IYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSL---MSFETNYKEVSKIYDQMQRS-G 310
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LI AL EEM+
Sbjct: 311 LQPDVISYALLINAYGKARREDEALAVFEEML 342
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 113/211 (53%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++ A+
Sbjct: 171 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 229
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++ G
Sbjct: 230 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + ++A ++ +EM+ + LQP ++T+ T+ GLC E R+++A++ +DM ++P
Sbjct: 290 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM----GIRP 345
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ ++I GLC E A+ M+ N
Sbjct: 346 NTVLYNAIILGLCKRRETHSAIDLFAYMIGN 376
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 106/214 (49%), Gaps = 8/214 (3%)
Query: 43 PLKPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
P++P Y Y+ +I L GR + + + + L+ R VP+ + + ++ +
Sbjct: 27 PVEPDAYT---YNTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRS 81
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
+ A+++ DEM + ++N ++N + G++D + + + Y P+ SYN
Sbjct: 82 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 141
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I++ G + R EDA ++ EM ++ P +VTF LI LC + V+ AL++ E + +
Sbjct: 142 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK- 200
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y P++ + L+ C ++ A+ F + MV
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 234
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
++N ++ G++D L + E V PDA +YN L+ G R +A V DEML
Sbjct: 2 AYNAMVAGYCGAGQLDAARRL--VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEML 59
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+RR P +VT+ L+ C +A+KL D MR PD + ++ G+C G +
Sbjct: 60 RRRCVPDVVTYTILLEATCKRSGYKQAMKLL-DEMRDKGCTPDIVTYNVVVNGICQEGRV 118
Query: 244 SLALGF 249
A+ F
Sbjct: 119 DDAIEF 124
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R+ D ++LHQLK D P I + VI +A + AL++
Sbjct: 241 DIVSYNTLLTALCRSGEVDVAVELLHQLK-DKGCAPVLISYNTVIDGLTKAGKTKEALEL 299
Query: 110 FDEMSSFNVQRTVKSFNTLL----------NAMLTCGKIDRMT----------------- 142
+EM S +Q + +++T+ +A+ GK+ M
Sbjct: 300 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 359
Query: 143 --------DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
DLF M P+ +Y IL+ G +++A + DE+ R
Sbjct: 360 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+ + ++ G C ++D A +L +M V+PDA + +LI+GLC G + AL +
Sbjct: 1 MAYNAMVAGYCGAGQLDAARRLVAEM----PVEPDAYTYNTLIRGLCGRGRTANALAVLD 56
Query: 252 EMVRNKIEMD 261
EM+R + D
Sbjct: 57 EMLRRRCVPD 66
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 105/207 (50%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +L ++ ++ L ++K + +L L +R P+ + + + + Y + AL
Sbjct: 171 RQDLHSFNTLLDILCKSKRVETAHSLLKTLT--SRFRPDTVTYNILANGYCLIKRTPMAL 228
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+V EM ++ T+ ++NT+L +I + + M+K D +Y ++HG
Sbjct: 229 RVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGF 288
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V+ ++ A +VF EM+K + P + T+ LI LC + V+ A+ + E+M R P+
Sbjct: 289 GVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPN 348
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ +I+GLC VG++ ALGF E M
Sbjct: 349 VVTYNVVIRGLCHVGDMERALGFMERM 375
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 10/242 (4%)
Query: 17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ 76
RL ALQ FK+ + + + P +D + R + F+ ++ +
Sbjct: 78 RLWNHGPKALQFFKHLDRHHPSYTHSPSS--------FDHAVDIAARMRDFNSAWALVGR 129
Query: 77 LKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
++ R+ P + Y A++ F M+ +++ + SFNTLL+ +
Sbjct: 130 MR-SLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSK 188
Query: 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+++ L + + PD +YNIL +G + +R A +V EM++R ++PT+VT+ T
Sbjct: 189 RVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNT 248
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ G ++ EA + +M + + D + ++I G G++ A EMV+
Sbjct: 249 MLKGYFRSNQIKEAWEFYLEMKK-RKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKE 307
Query: 257 KI 258
+
Sbjct: 308 GV 309
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 3/173 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM- 148
F + + R R A + M S + + K+ L + GK R F M
Sbjct: 107 FDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMA 166
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
E + D S+N L+ S+R+E A + + L R +P VT+ L G CL R
Sbjct: 167 EHGIRQDLHSFNTLLDILCKSKRVETAHSLL-KTLTSRFRPDTVTYNILANGYCLIKRTP 225
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
AL++ ++M++ ++P + +++KG ++ A F EM + K E+D
Sbjct: 226 MALRVLKEMVQ-RGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEID 277
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 92/203 (45%), Gaps = 9/203 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I G A + +++ H++ + VVP + +I + +E+A+ V
Sbjct: 277 DVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEG-VVPNVATYNALIQVLCKKDSVENAVVV 335
Query: 110 FDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC--SYNILMHGC 166
F+EM+ V V ++N ++ + G ++R + M ++ AC +YN+++
Sbjct: 336 FEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEH-GLRACVQTYNVVIRYF 394
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNV 223
+ +E A +VF +M P L T+ LI + + + ++ A KL DM+
Sbjct: 395 CDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVD-RGF 453
Query: 224 KPDAQVFASLIKGLCAVGELSLA 246
P F ++ GL G A
Sbjct: 454 LPRKFTFNRVLNGLVITGNQDFA 476
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 40 EAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93
EAQ L + N+ Y +II + +E ++ ++ ++ VP + F +
Sbjct: 177 EAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMI-ESNCVPNAVTFNTL 235
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC---GKIDRMTDLFQIMEK 150
I+ + +A +LE A+++F EM + T+ ++NTL++++ C G + DLF +E
Sbjct: 236 IAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSL--CKKRGGVYTAVDLFNKLEG 293
Query: 151 Y-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
++P +YN L+ G S R D ++ M +P ++T+ LI GLC RV++
Sbjct: 294 AGLTPTIVTYNSLIQG--FSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVED 351
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
A +L M P+ F LI+GLCA
Sbjct: 352 AQRLFNGMA----CAPNVTTFNFLIRGLCA 377
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 38/168 (22%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A++ F EM + V+ ++S++ LL+A+ G++ LF M SPD +YN+LM G
Sbjct: 111 AIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMT--CSPDIMTYNVLMDG 168
Query: 166 -CVVSR----------------------------------RLEDAWKVFDEMLKRRLQPT 190
C + + ++E+AW+VF +M++ P
Sbjct: 169 YCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPN 228
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
VTF TLI G C +++A+KL +M ++ K + +LI LC
Sbjct: 229 AVTFNTLIAGFCKAGMLEDAIKLFAEMEKI-GCKATIVTYNTLIDSLC 275
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 6/193 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ + E Q ++ ++ P + +I+ Y + +E A +V
Sbjct: 158 DIMTYNVLMDGYCKIGQTYEAQSLMKEIL-KAGYEPNVFTYSIIINCYCKLDKVEEAWEV 216
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG-CV 167
F +M N +FNTL+ G ++ LF MEK +YN L+ C
Sbjct: 217 FMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCK 276
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ A +F+++ L PT+VT+ +LI G R ++ L+L M KPD
Sbjct: 277 KRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQG--FSERANDGLRLLCH-MHAEGCKPDV 333
Query: 228 QVFASLIKGLCAV 240
+ LI GLC+
Sbjct: 334 ITYNCLISGLCSA 346
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY- 151
+I + + + A+ VF +M S + + NTLL + G++ LF+ M+
Sbjct: 31 LIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGP 90
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
P + S+NIL+ G ++ R A + F EM ++P L ++ L+ L R+ EA
Sbjct: 91 FLPTSASHNILLRGFFMAGR---AIEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAH 147
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
L M PD + L+ G C +G+ A +E+++ E
Sbjct: 148 ALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYE 191
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
K D+ LF +++ +P+A +YN+L+ G ++ A VF +M L P T
Sbjct: 5 KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
TL+ GLC ++ ALKL + M+ P + L++G G A+ F +EM
Sbjct: 65 TLLLGLCEIGQMSSALKLFRE-MQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMKA 120
Query: 256 NKIEMD 261
+ +E D
Sbjct: 121 SGVEPD 126
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E L P ++ Y+ +I + D ++ + H H P+ I + +IS
Sbjct: 289 NKLEGAGLTP---TIVTYNSLIQGFSE-RANDGLRLLCHM--HAEGCKPDVITYNCLISG 342
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
A +E A ++F+ M+ V +FN L+ + K++ + I+++ +PD
Sbjct: 343 LCSANRVEDAQRLFNGMA---CAPNVTTFNFLIRGLCAQKKVEEARN---ILDRMTAPDM 396
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++N ++ + + DA +V +MLK P T L +G+
Sbjct: 397 TTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGI 441
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 112/212 (52%), Gaps = 8/212 (3%)
Query: 48 RYNLLHYDL-----IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
R NL +D II LGRA + + IL + + +E ++ +I YG+ +
Sbjct: 37 RSNLFQHDRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDLWVLMIDSYGKKGI 95
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ ++++F +M V+RT+KS++ L +L G+ F +++ + + P ++N+
Sbjct: 96 VQESVKLFQKMEELGVERTIKSYDALFKVILRRGRFMMAKRYFNKMLNEGIEPTRHTFNV 155
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G +S ++E A F++M R + P ++T+ TLI G +++EA + + M+
Sbjct: 156 MIWGFFLSGKVETANXFFEDMKSRDITPDVITYNTLINGYYRVKKMEEAERYFVE-MKGR 214
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
N++P + +LIKG +V + AL EEM
Sbjct: 215 NIEPTVITYTTLIKGYVSVDRVDDALSLMEEM 246
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 116/276 (42%), Gaps = 72/276 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ + +I GRA L HA
Sbjct: 12 HELVYNVLHGAKKTEHALQFFRWVERSNLFQHDRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKSFNTL---------- 128
+++F +M V+RT+KS++ L
Sbjct: 72 PKKGLEWDEDLWVLMIDSYGKKGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRF 131
Query: 129 ------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYNIL 162
N ML GK++ F+ M+ + ++PD +YN L
Sbjct: 132 MMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETANXFFEDMKSRDITPDVITYNTL 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G +++E+A + F EM R ++PT++T+ TLI G RVD+AL L E+ M+ +
Sbjct: 192 INGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDALSLMEE-MKGFG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KP+A +++L+ GLC ++S A +EMV I
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYI 286
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIKGYVSVDRVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ + + P+A +Y+ L+ G + ++ +A + EM+ + + PT + F LI G
Sbjct: 241 SLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAPTDNSIFLKLISG 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C + A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIENYCKAEKYDKAVNLLDKLIEKDI 357
>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 845
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 3/210 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F + ++L ++ D P + + +I YGRA L A
Sbjct: 345 FKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDG-CKPNTVTYNRLIHSYGRANYLNEA 403
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+ VF +M + ++ TL++ G +D D++Q M+ +SPD +Y+++++
Sbjct: 404 MNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINC 463
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A ++F EM+ + P LVTF +I + ALKL DM +P
Sbjct: 464 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQP 522
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D ++ +++ L G L A G EM R
Sbjct: 523 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQR 552
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A L P + Y +II LG+A ++ ++ P + F +I+ + +
Sbjct: 446 QAAGLSP---DTFTYSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIALHAK 501
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
AR E AL+++ +M + Q +++ ++ + CG ++ +F M+ K PD
Sbjct: 502 ARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPV 561
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +L+ + +E AW+ + EML L+P + T +L+ R+ EA L + M+
Sbjct: 562 YGLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSML 621
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ + P Q + +L+ C + +GF
Sbjct: 622 AL-GLHPSLQTY-TLLLSCCTDARSNFDMGF 650
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 204 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 252
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A ++ D+M ++ + ++N+L+N ++D+ +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 373 DGDCDNAQKVFKQMVS-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 106/190 (55%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+ D+M+KR + P + T+ +LI G C+ R+D+A ++ E M+ + PD
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS-KDCFPDLD 326
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 327 TYNTLIKGFC 336
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 443 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 477
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P F ++S + + + + + ++M + + ++N L+N +I
Sbjct: 4 SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISL 63
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + + L++G +R+ DA + D+M++ +P +TF TLI+
Sbjct: 64 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +P+ + ++ GLC G++ LA +M KIE
Sbjct: 124 GLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182
Query: 260 MD 261
D
Sbjct: 183 AD 184
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 101/206 (49%), Gaps = 5/206 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
++ ++ +++ + + K FD V + +++ + + N+ I+ + R + AL
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQR--LGISHNLYTYNILINCFCRRSQISLALA 66
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ +M + ++ + ++LLN +I D + + Q++E PD ++ L+HG
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + +A + D M++R QP LVT+G ++ GLC +D A L + M ++ D
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL-NKMEAAKIEADV 185
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+F ++I LC + AL +EM
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEM 211
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N EA ++ +++ ++ II L + + D+ + +++ + P + + ++IS
Sbjct: 174 NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEMETKG-IRPNVVTYSSLISC 229
Query: 97 ---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYV 152
YGR A Q+ +M + + +FN L++A + GK L M ++ +
Sbjct: 230 LCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD +YN L++G + RL+ A ++F+ M+ + P L T+ TLI G C RV++ +
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L +M + D + +LI+GL G+ A ++MV + + D
Sbjct: 347 LFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 481
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTYNTLI 507
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E Q +KP + L Y+ +I + + ++ ++++K V P + +I YGR
Sbjct: 416 EKQGMKP---DHLAYNCLIRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILIGGYGR 471
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
+ + EM V S+ TL+N + K+ + + ME + VSP
Sbjct: 472 KYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRI 531
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+ GC ++EDA++ EMLK+ ++ LVT+ TLI GL + ++ EA L ++
Sbjct: 532 YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R +KPD + SLI G G + + EEM R+ I+
Sbjct: 592 R-KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK 631
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 3/203 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y L+ L +KM E + L+++ + P ++ + + + VF
Sbjct: 110 FSYLLLSVLLNESKMISEAADLFFALRNEG-IYPSSDSLTLLLDHLVKTKQFRVTINVFL 168
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSR 170
+ + + + + + A + + + +LF M+ + P YN+L+ G +
Sbjct: 169 NILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGK 228
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+ DA ++FDEML RRL P+L+T+ TLI G C +++ K++E M+ +++P F
Sbjct: 229 RMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE-RMKADHIEPSLITF 287
Query: 231 ASLIKGLCAVGELSLALGFKEEM 253
+L+KGL G + A +EM
Sbjct: 288 NTLLKGLFKAGMVEDAENVLKEM 310
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 7/213 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + E Q I+ + D V P+ I+ +I +E A +
Sbjct: 493 NVVSYGTLINCLCKGSKLLEAQ-IVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM ++ + ++NTL++ + GK+ DL +I K + PD +YN L+ G
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGF 611
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ +++EM + ++PTL T+ LI LC E ++L E + ++KPD
Sbjct: 612 AGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLC----TKEGIELTERLFGEMSLKPDLL 666
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+ ++ G++ A +++M+ I +D
Sbjct: 667 VYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + K ++ +Q+ ++ R++P I + +I Y +A E + +V + M
Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLA-RRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM 275
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ +++ ++ +FNTLL + G ++ ++ + M+ PDA +++IL G + +
Sbjct: 276 KADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFA 231
E A V++ + ++ T L+ LC E ++++A + L +M + + P+ ++
Sbjct: 336 EAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK--GLVPNEVIYN 393
Query: 232 SLIKGLCAVGEL 243
++I G C G+L
Sbjct: 394 TMIDGYCRKGDL 405
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 9/211 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K NL+ Y+ +I L E + +L ++ + P+ + ++IS YG A ++
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG-LKPDVFTYNSLISGYGFAGNVQ 616
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164
+ +++EM ++ T+K+++ LL ++ T I+ LF M + PD YN ++H
Sbjct: 617 RCIALYEEMKRSGIKPTLKTYH-LLISLCTKEGIELTERLFGEMS--LKPDLLVYNGVLH 673
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRVYN 222
V +E A+ + +M+++ + T+ +LI G +L+V + +++ D M
Sbjct: 674 CYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG---QLKVGKLCEVRSLIDEMNARE 730
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++P+A + ++KG C V + A + EM
Sbjct: 731 MEPEADTYNIIVKGHCEVKDYMSAYVWYREM 761
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 1/140 (0%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++ +L + + P+ +++ V+ Y +E A + +M ++ ++N+L+
Sbjct: 650 ELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG 709
Query: 132 MLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
L GK+ + L M + + P+A +YNI++ G + A+ + EM ++
Sbjct: 710 QLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLD 769
Query: 191 LVTFGTLIYGLCLELRVDEA 210
+ L+ GL E R EA
Sbjct: 770 VCIGNELVSGLKEEWRSKEA 789
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++ A ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 366
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 104/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D ++ ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDGANELFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 381 V-GLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRD 416
>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y+ II L + K+ + + ++ + RV P + + ++I + L+ A
Sbjct: 186 RPDVVMYNTIIDGLCKDKLVRDAFDLYCEM-FEKRVFPNVVTYTSLIYGFCIVGQLDKAF 244
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGC 166
+ +EM NV V +FNTL++ + GK+ L +M K V PD +YN LM G
Sbjct: 245 GLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGY 304
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + A VF+ M + + + ++ +I GL +DEA+ L E MR NV PD
Sbjct: 305 FLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEG-MRNENVIPD 363
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++SLI GLC G ++ AL + +EM
Sbjct: 364 VVAYSSLIDGLCKSGRINSALKYVDEM 390
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I+ L + KM DE + ++++ V+P+ + + ++I ++ + AL+ DEM
Sbjct: 332 YSVMISGLSKMKMLDEAMDLFEGMRNEN-VIPDVVAYSSLIDGLCKSGRINSALKYVDEM 390
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
V ++ +L++A+ ++D+ L + I ++ + + +YNIL+ G RL
Sbjct: 391 HDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRL 450
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA KVF ++L + +VT+ +I GLC E DEAL L M V PDA + +
Sbjct: 451 TDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCV-PDAIAYET 509
Query: 233 LIKGL 237
+I
Sbjct: 510 IINAF 514
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I ++ +L D + S ++ S+ TL+N + G+ L
Sbjct: 117 PDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRL 176
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +E + PD YN ++ G + + DA+ ++ EM ++R+ P +VT+ +LIYG C+
Sbjct: 177 LRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCI 236
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++D+A L +M+ + NV P+ F +L+ GLC G++ A M++ + D
Sbjct: 237 VGQLDKAFGLLNEMV-LKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDV 294
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
L A+ F+ M + F +L +++ + LFQ ME + + + + NI
Sbjct: 30 LNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ R++ A+ VF ++LK QP ++T+ TLI GLCL +V E+L D +
Sbjct: 90 LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNF-HDRLVSQ 148
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+K D + +LI GLC +G+ AL
Sbjct: 149 GIKLDHVSYGTLINGLCKIGQTGPAL 174
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I F ++ + + + +F M +Q + N L+N+ +I+ +
Sbjct: 47 PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +I++ PD +Y L+ G ++ +++++ D ++ + ++ V++GTLI GLC
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166
Query: 204 ELRVDEAL----------------------------KLKEDMMRVY------NVKPDAQV 229
+ AL KL D +Y V P+
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ SLI G C VG+L A G EMV
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMV 251
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+F M +Q +T LI C +++ A + ++++ +PD + +LI+GL
Sbjct: 71 LFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKL-GYQPDIITYTTLIRGL 129
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
C G++ +L F + +V I++D
Sbjct: 130 CLNGQVKESLNFHDRLVSQGIKLD 153
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLL 103
K F +++ ++++I L R + IL ++ KH + P + + ++ + + + +
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQ--PNSLSYNPLLHGFCKEKKM 395
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A++ + M S + ++NT+L A+ GK++ ++ Q+ K SP +YN +
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + A K+ DEM + L+P +T+ +L+ GL E +VDEA+K + R+
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM-G 514
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGF 249
V+P+A F S++ GLC + A+ F
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDF 541
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
++G+ + ++ ++L + VP+ I + +IS Y +A + +AL V D MS V
Sbjct: 149 RMGKTRKAAKILEVLE----GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201
Query: 120 RTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
V ++NT+L ++ GK+ + M L +++++ PD +Y IL+ + A K+
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKL 261
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM R P +VT+ L+ G+C E R+DEA+K DM +P+ +++ +C
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMC 320
Query: 239 AVGELSLALGFKEEMVR 255
+ G A +M+R
Sbjct: 321 STGRWMDAEKLLADMLR 337
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 109/221 (49%), Gaps = 3/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + N++ +++I+ + + + +++L + P + F +I+F R L
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGL 359
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L A+ + ++M Q S+N LL+ K+DR + + M + PD +YN
Sbjct: 360 LGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ ++EDA ++ +++ + P L+T+ T+I GL + +A+KL D MR
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL-DEMRAK 478
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KPD ++SL+ GL G++ A+ F E R + +A
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNA 519
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 99/199 (49%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I R + ++L +++ D P+ + + +++ + L+ A++
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMR-DRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
++M S Q V + N +L +M + G+ +D L ++ K SP ++NIL++
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L A + ++M K QP +++ L++G C E ++D A++ E M+ PD
Sbjct: 357 KGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS-RGCYPDIV 415
Query: 229 VFASLIKGLCAVGELSLAL 247
+ +++ LC G++ A+
Sbjct: 416 TYNTMLTALCKDGKVEDAV 434
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L + ++ +IL+QL P I + VI +A A+++
Sbjct: 413 DIVTYNTMLTALCKDGKVEDAVEILNQLSSKG-CSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
DEM + +++ ++++L+ + GK+D F E+ V P+A ++N +M G
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK 531
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+R+ + A M+ R +PT ++ LI GL E EAL+L
Sbjct: 532 TRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALEL 576
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHG 165
F +S V V+S N L + T + + F+ +E V PD L+ G
Sbjct: 91 FSSANSSFVLEDVESNNHLRQLVRT----GELEEGFKFLENMVYHGNVPDIIPCTTLIRG 146
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ A K+ + + P ++T+ +I G C ++ AL + + M +V P
Sbjct: 147 FCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSP 202
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D + ++++ LC G+L A+ + M++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQ 232
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 36/216 (16%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
HD R+ P+++I+ ++I Y +A ++ A ++D M + ++ TL+N + G +
Sbjct: 673 HDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLM 732
Query: 139 DRMTDLFQ-------------------------IMEKYVS----------PDACSYNILM 163
D+ L++ MEK V + SYNIL+
Sbjct: 733 DKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILV 792
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+E+A K+ DEM+ + P +T+ T+IY C +D A++ + M+ +
Sbjct: 793 RGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLN-KGL 851
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
KPD + LI G C GEL A +++M+R ++
Sbjct: 852 KPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVK 887
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
D + P + + ++IS Y L A +++ EM+ + +F TL++A+ + +
Sbjct: 464 DKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALF---RAN 520
Query: 140 RMTDLF----QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
RMTD F +++E+ + P+ +YN+++ G A+++ ++M+++ L P T+
Sbjct: 521 RMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYR 580
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
LI LC RV EA K +D+ R + K + +++L+ G C G L ALG EMV+
Sbjct: 581 PLISSLCSTGRVCEAKKFIDDLHREH-FKLNEMCYSALLHGYCKEGRLRDALGVCREMVK 639
Query: 256 NKIEMD 261
++MD
Sbjct: 640 RGVDMD 645
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L A+ FDEM ++ TV S+ +L++ GK+ L+ M K ++P+ ++
Sbjct: 452 LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ + R+ DA+++FDEML++ + P VT+ +I G C E +A +L M++
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQ-K 570
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + LI LC+ G + A F +++ R +++
Sbjct: 571 GLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 3/214 (1%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q ++ N++ Y+++I L + K E +I + L + E+ +C ++ + +
Sbjct: 252 QRMESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKG-LTASEVTYCTLVLGLCKVQ 310
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYN 160
E V DEM T + ++L+ + GK+ DL ++K + P YN
Sbjct: 311 EFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYN 370
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L++ + ++A +F EM ++ L VT+ LI C ++D A+ M+ +
Sbjct: 371 ALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMI-M 429
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+K + SLI G C +G LS A+ F +EM+
Sbjct: 430 AGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI 463
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I +L +A + D+ + + ++ + P + +C + R +E A+Q+
Sbjct: 715 NIVTYTTLINELCKAGLMDKAELLWKEML-VSNSTPNHVTYCCFLDHLAREGSMEKAVQL 773
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ----------------------- 146
++M + TV S+N L+ G+++ T L
Sbjct: 774 HNDMLKGLLANTV-SYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCR 832
Query: 147 -------------IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ K + PD +YN L++GC ++ L A+++ D+M++R ++P T
Sbjct: 833 RGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQAT 892
Query: 194 FGTLIYG 200
+L +G
Sbjct: 893 HKSLSHG 899
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 21/228 (9%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--------FCNVISF 96
K F ++ + + ++I L A +F +L L + P E+ C+ IS
Sbjct: 99 KNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISS 158
Query: 97 YGRARLLEHALQ---VFDEMSSFNVQRT------VKSFNTLLNAMLTCGKIDRMTDLF-Q 146
G L++ +Q +FD + F + R V++ +LN + ++D + LF +
Sbjct: 159 LGFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGE 218
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
I+ + PD Y ++ + A ++ M L +V + LI+GLC R
Sbjct: 219 ILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLN--VVVYNVLIHGLCKNKR 276
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V EA+++K +++ + + +L+ GLC V E + G +EM+
Sbjct: 277 VWEAVEIKNGLIQ-KGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI 323
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 52 LHYDLII-TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L +DL+I + + +MFD V ++ +L ++P+ V++ + R ++ L +F
Sbjct: 159 LGFDLLIQSYVQEKRMFDSV--LIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLF 216
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
E+ S ++ + + ++ + + ++ Q ME + YN+L+HG ++
Sbjct: 217 GEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMES-SDLNVVVYNVLIHGLCKNK 275
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+ +A ++ + ++++ L + VT+ TL+ GLC + + ++M+ + V P
Sbjct: 276 RVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFV-PTEAAL 334
Query: 231 ASLIKGL 237
+SL++GL
Sbjct: 335 SSLVEGL 341
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 36/209 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I L + FDE + + ++ + + ++ + +I + R L+ A+
Sbjct: 365 SLFVYNALINSLCKDGKFDEAELLFKEMG-EKGLCANDVTYSILIDSFCRRGKLDTAIHF 423
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
+M ++ TV +N+L+N G
Sbjct: 424 LGKMIMAGIKITVYPYNSLINGHCKLGN-------------------------------- 451
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A FDEM+ + L+PT+V++ +LI G C + ++ EA +L +M + P+
Sbjct: 452 --LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTG-KGIAPNTYT 508
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
F +LI L ++ A +EM+ +
Sbjct: 509 FTTLISALFRANRMTDAFRLFDEMLEQNM 537
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 2/176 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP E +++ R + A + + + ++ +N L+N++ GK D
Sbjct: 328 VPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAEL 387
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF+ M EK + + +Y+IL+ +L+ A +M+ ++ T+ + +LI G C
Sbjct: 388 LFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHC 447
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ A+ ++M+ +KP + SLI G C G+L A EM I
Sbjct: 448 KLGNLSAAVSFFDEMID-KGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGI 502
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L E ++ + L H E+ + ++ Y + L AL V EM
Sbjct: 579 YRPLISSLCSTGRVCEAKKFIDDL-HREHFKLNEMCYSALLHGYCKEGRLRDALGVCREM 637
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V + + L++ + + L + M ++ + PD Y ++ G + +
Sbjct: 638 VKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSV 697
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ ++D M+ P +VT+ TLI LC +D+A L ++M+ V N P+ +
Sbjct: 698 KKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEML-VSNSTPNHVTYCC 756
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+ L G + A+ +M++
Sbjct: 757 FLDHLAREGSMEKAVQLHNDMLKG 780
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y+ II L + ++ E I ++K V P+ + ++ + E A
Sbjct: 221 RPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKG-VRPDVFTYSILMHGLCNSDQKEEAS 279
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+F+EM S N+ V +FN L++ + G + + +IM EK V P+ +YN LM+G
Sbjct: 280 ALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGY 339
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ +A VFD M+ + P +V++ LI G C R+DEA +L D M + P+
Sbjct: 340 CLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAREL-FDEMSFRGLIPN 398
Query: 227 AQVFASLIKGLCAVG 241
+ +LI GLC G
Sbjct: 399 TFNYNTLISGLCQAG 413
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ H++++I R + D +L ++ P+ + F ++I+ A++
Sbjct: 118 DVFHFNILINCFSRLQRVDFAFSVLGKIIK-LGFEPDAVTFSSLINGLCFEDKFARAMEF 176
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
FDEM + Q + ++NT++ GK L + M+K PD YN ++ G
Sbjct: 177 FDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCK 236
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + +A +F E+ + ++P + T+ L++GLC + +EA L +MM + N+ PD
Sbjct: 237 DRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSL-NIMPDVV 295
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
F L+ LC G LS A G + M+ +E
Sbjct: 296 TFNILVDKLCKEGMLSEAQGIIKIMIEKGVE 326
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 3/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R ++ Y +++ L + +E + +++ ++P+ + F ++ + +L
Sbjct: 253 KGVRPDVFTYSILMHGLCNSDQKEEASALFNEMM-SLNIMPDVVTFNILVDKLCKEGMLS 311
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + M V+ ++N+L+N K+ +F M K P+ SYNIL+
Sbjct: 312 EAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILI 371
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G ++R+++A ++FDEM R L P + TLI GLC R EA +L +D M+
Sbjct: 372 NGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKD-MQAQGC 430
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
PD L+ LC +G L AL
Sbjct: 431 SPDLVTCTILLDSLCKLGYLDNAL 454
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ +++++ KL + M E Q I+ ++ + V P + ++++ Y + A V
Sbjct: 293 DVVTFNILVDKLCKEGMLSEAQGII-KIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMV 351
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
FD M + V S+N L+N +ID +LF M + + P+ +YN L+ G
Sbjct: 352 FDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQ 411
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +A ++F +M + P LVT L+ LC +D AL+L M+ +KP+
Sbjct: 412 AGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFR-AMQDSCLKPNLV 470
Query: 229 VFASLIKGLCAVGEL 243
+ LI+ + G++
Sbjct: 471 TYDILIRAMYKSGKI 485
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLE 173
++R V FN L+N ++ R+ F ++ K + PDA +++ L++G +
Sbjct: 115 IERDVFHFNILINCF---SRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFA 171
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + FDEM+ QP L T+ T+I G C + A+ L + M + +PD ++ ++
Sbjct: 172 RAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGG-RPDIVIYNTI 230
Query: 234 IKGLCAVGELSLALGFKEEM 253
I GLC +S AL E+
Sbjct: 231 IDGLCKDRLVSEALDIFSEI 250
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 93/189 (49%), Gaps = 3/189 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ +D +++ L R K + V + +++ R+ + F +I+ + R + ++ A V
Sbjct: 84 IVEFDKLLSALVRIKHYGTVLSLSKRIEL-LRIERDVFHFNILINCFSRLQRVDFAFSVL 142
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
++ + +F++L+N + K R + F +++ P+ +YN ++ G
Sbjct: 143 GKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKI 202
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ A + +M K +P +V + T+I GLC + V EAL + ++ + V+PD
Sbjct: 203 GKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEI-KGKGVRPDVFT 261
Query: 230 FASLIKGLC 238
++ L+ GLC
Sbjct: 262 YSILMHGLC 270
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + M E ++L VP+++ +C++I+ +E AL++F+E
Sbjct: 294 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 352
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N+L+ + G I + + ++ E+ PD +YNI+++G +
Sbjct: 353 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 412
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA V ++ + + P + TF TLI G C L++D AL+L E M Y + PD + S
Sbjct: 413 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTITYNS 471
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
++ GLC G+++ +EM+
Sbjct: 472 VLNGLCKAGKVNEVNETFQEMI 493
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ F +I Y + L+ ALQ+ + M + + ++N++LN + GK++ + +
Sbjct: 428 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 487
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
FQ ++ K P+ +YNIL+ S ++E+A KV +M + L P V+F TLIYG C
Sbjct: 488 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 547
Query: 203 LELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ A KL+E + Y+ D F +LI + +A +EM+
Sbjct: 548 RNGDLEGAYLLFQKLEE---KGYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 602
Query: 259 EMDA 262
D+
Sbjct: 603 RADS 606
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDA 156
A L A+++ D M ++ V V ++NTL+ + C K + M L ++M + PD
Sbjct: 235 AGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGL--CKKSMPQEAMHYLRRMMNQGCLPDD 291
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ G +++A ++ + + + P VT+ +LI GLC E V+ AL+L +
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 351
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +KPD V+ SL+KGLC G + AL EM D
Sbjct: 352 A-QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 395
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 37/200 (18%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ +++ +++ L+ HALQV +EM+ ++++N ++N + G I T
Sbjct: 357 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 416
Query: 143 -------------DLF-----------------------QIMEKYVSPDACSYNILMHGC 166
D+F ++ E ++PD +YN +++G
Sbjct: 417 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 476
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ + + F EM+ + P +T+ LI C +++EA K+ M + + PD
Sbjct: 477 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ-EGLHPD 535
Query: 227 AQVFASLIKGLCAVGELSLA 246
A F +LI G C G+L A
Sbjct: 536 AVSFNTLIYGFCRNGDLEGA 555
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHAL---QV 109
Y ++ L + +Q+ Q+ H T V P F V+ + R +LE L +V
Sbjct: 155 YCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 213
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
S N+ ++N + + G++ L M Y PD +YN L+ G
Sbjct: 214 IQRGMSINL----FTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKK 269
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++A M+ + P T+ T+I G C V EA +L +D + PD
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV-FKGFVPDQVT 328
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLCA G++ AL E I+ D
Sbjct: 329 YCSLINGLCAEGDVERALELFNEAQAKGIKPD 360
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LK N + Y+++I R+ +E +++ ++ + + P+ + F +I + R L
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 552
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
E A +F ++ T +FNTL+ A + +F +++ K D+ +Y +L
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 612
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + ++ A+ EM+K+ P++ TFG +I L + RV +A+ + M+++
Sbjct: 613 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 670
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ A G++ D F+ M+ + P A +YN +M V + + A KV+ ML +
Sbjct: 58 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P L T + CL R AL+L +R + A + +++ GL A G A
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRL----LRALPHR-GAVAYCTVVCGLYAHGHTHDAR 172
Query: 248 GFKEEMVRNKI 258
++M+ +
Sbjct: 173 QLFDQMLHTHV 183
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 94/174 (54%), Gaps = 10/174 (5%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
MFD + ++ ++ P +I+ +I +++ +++AL + + M ++ ++
Sbjct: 173 MFDRMVEMGYE--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTY 224
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N+L++ + G+ D T + M K + PD ++N L+ CV R+ +A ++++EM++
Sbjct: 225 NSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR 284
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
R L P +VT+ LIYGLC+ R+DEA ++ M PD ++ LI G C
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEQMF-GFMVSKGCFPDVVTYSILINGYC 337
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II L ++K D +L++++ D + P+ + + ++IS + + A ++
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG-IRPDAVTYNSLISGLCNSGRWDDATRM 243
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M+ + V +FN L++A + G+I +L++ ++ + + PD +Y++L++G +
Sbjct: 244 VSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCM 303
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL++A ++F M+ + P +VT+ LI G C +V+ +KL +M + V +
Sbjct: 304 YSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ-RGVVRNTV 362
Query: 229 VFASLIKGLCAVGELSLA 246
+ LI+G C G+L++A
Sbjct: 363 TYTVLIQGYCRAGKLNVA 380
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 4/199 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+ D + H ++ R +P F ++S + + + + ++++M + + +
Sbjct: 61 KLDDSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCT 118
Query: 125 FNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LLN C ++ ++ L ++M+ PD ++ L++G R+ DA +FD M+
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV 178
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +P +V + T+I GLC +VD AL L + M V ++PDA + SLI GLC G
Sbjct: 179 EMGYEPNVVIYNTIIDGLCKSKQVDNALDLL-NRMEVDGIRPDAVTYNSLISGLCNSGRW 237
Query: 244 SLALGFKEEMVRNKIEMDA 262
A M + +I D
Sbjct: 238 DDATRMVSCMTKREIYPDV 256
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 95/189 (50%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +Q+ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EMS V R ++ L+ GK++ ++F+ M V P+ +YN+L+HG
Sbjct: 349 FCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCD 408
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++E A + +M K + +VT+ +I G+C V +A L + + + PD
Sbjct: 409 NGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCS-LNLKGLTPDIW 467
Query: 229 VFASLIKGL 237
+ +++ GL
Sbjct: 468 TYTAMMLGL 476
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 11/210 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSS 115
+++ + + K +D V + Q++ +P + CN++ + + R L AL +M
Sbjct: 87 LLSAISKMKKYDVVIYLWEQMQ--MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMK 144
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRR 171
+ + +F +LLN + DR+ D + ++ V P+ YN ++ G S++
Sbjct: 145 LGHEPDIVTFGSLLNGFC---RGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQ 201
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A + + M ++P VT+ +LI GLC R D+A ++ M + + PD F
Sbjct: 202 VDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTK-REIYPDVFTFN 260
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI G +S A EEM+R ++ D
Sbjct: 261 ALIDACVKEGRISEAEELYEEMIRRSLDPD 290
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/246 (19%), Positives = 110/246 (44%), Gaps = 41/246 (16%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E ++P + + Y+ +I+ L + +D+ +++ + + P+ F +I
Sbjct: 210 NRMEVDGIRP---DAVTYNSLISGLCNSGRWDDATRMVSCMTK-REIYPDVFTFNALIDA 265
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ + A ++++EM ++ + +++ L+ + ++D +F M K PD
Sbjct: 266 CVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPD 325
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL---------------------------- 187
+Y+IL++G S+++E K+F EM +R +
Sbjct: 326 VVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFK 385
Query: 188 -------QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
P ++T+ L++GLC ++++AL + DM + + D + +I+G+C
Sbjct: 386 WMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKS-GMDADIVTYNIIIRGMCKA 444
Query: 241 GELSLA 246
GE++ A
Sbjct: 445 GEVADA 450
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-L 103
K F + +DL++ L A++ ++Q + PE CN + +RL L
Sbjct: 194 KAFSSDPASFDLLLLCLPSAELLRRLRQ------YGLSPSPES---CNAV----LSRLPL 240
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
+ A+ +F E+ NV S N LL A+L+ G++ F M PD +Y ++
Sbjct: 241 DEAIALFRELPDKNVC----SHNILLKALLSAGRLKDACQHFDEMSS--PPDVVTYGTMV 294
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG V LE+A K+ DEM + L+ + ++I LC + +V +AL++ EDM ++ V
Sbjct: 295 HGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMT-MHGV 353
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
DA VF ++I G C+ G+L+ A EEM + + D
Sbjct: 354 ALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAAD 391
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
LE A+++ EM + + V ++ TL++ + G+ DR ++ Q +++K + P +YN+
Sbjct: 513 LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNV 572
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM+G +S R+E K+ + ML++ ++P +VT+ +L+ C++ + ++ + M
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKG-MHSQ 631
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V P+ + LIKG C + AL F +EM+ + + A
Sbjct: 632 EVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTA 672
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 11/135 (8%)
Query: 130 NAMLTCGKIDRMTDLFQIMEKYVSPD--ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
NA+L+ +D LF+ + PD CS+NIL+ + + RL+DA + FDEM
Sbjct: 232 NAVLSRLPLDEAIALFREL-----PDKNVCSHNILLKALLSAGRLKDACQHFDEMSS--- 283
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +VT+GT+++G C+ ++ A+KL D M ++ +A V+ S+I LC G++S AL
Sbjct: 284 PPDVVTYGTMVHGYCVRGELENAVKLL-DEMAAKGLESNATVYTSVIALLCNKGQVSDAL 342
Query: 248 GFKEEMVRNKIEMDA 262
E+M + + +DA
Sbjct: 343 RVLEDMTMHGVALDA 357
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V + ++F VIS + L A ++F+EM + + L+N + G++
Sbjct: 353 VALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEAD 412
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ Q M +K + D +Y +L+ G + +A++V +EM+ RR+ P +VT+ L GL
Sbjct: 413 RVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGL 472
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C + V A +L +M ++ + + SLI GLC G L A+ EM
Sbjct: 473 CKQGDVRAANELLHEMCN-KGLELNVYTYNSLINGLCKFGNLEQAMRIMTEM 523
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +I L RA E ++L ++ D + + + + +I Y + + A +V +EM
Sbjct: 395 HTALINGLCRAGELKEADRVLQEMV-DKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM 453
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V V ++ L + + G + +L M K + + +YN L++G L
Sbjct: 454 VGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNL 513
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A ++ EM + + T+ TLI LC D A + ++M+ +KP +
Sbjct: 514 EQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLD-KGIKPSIATYNV 572
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
L+ G C G + E M+ +
Sbjct: 573 LMNGFCMSGRVEGGKKLLEWMLEKNV 598
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 92/185 (49%), Gaps = 3/185 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I L ++ FD +L ++ D + P + +++ + + +E
Sbjct: 529 RTDVYTYTTLIDTLCKSGEFDRAHNMLQEML-DKGIKPSIATYNVLMNGFCMSGRVEGGK 587
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
++ + M NV+ V ++N+L+ + T++++ M + V+P+ +YNIL+ G
Sbjct: 588 KLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGH 647
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R +++A EM+++ L+ T ++ LI L + + EA ++ D MR + +
Sbjct: 648 CKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEA-RVFFDKMRNEGLTAE 706
Query: 227 AQVFA 231
V++
Sbjct: 707 PDVYS 711
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L +A ++ +I ++ D P +I+ +I+ +G++ ++ A ++F +M
Sbjct: 904 YGPLIDGLLKAGRSEQAMKIFEEML-DYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ +KS+ L+ + G+ID F+ ++ + PD SYN +++G SRRL
Sbjct: 963 VKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRL 1022
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A +F EM R + P L T+ LI L + +VD A+K+ E++ V ++P + +
Sbjct: 1023 DEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLV-GLEPSVFTYNA 1081
Query: 233 LIKGLCAVGELSLALG-FKEEMV 254
LI+G G A FK+ MV
Sbjct: 1082 LIRGHSLSGNKDQAFSVFKKMMV 1104
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + ++ +G+++ + ++ EM S + + N +++A++ +++ DL
Sbjct: 829 PNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDL 888
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ++M SP C+Y L+ G + + R E A K+F+EML P V + LI G
Sbjct: 889 YYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGK 948
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+D A +L + M++ ++PD + + L++ LC G + A+ + EE+ ++ D
Sbjct: 949 SGEIDFACELFKKMVK-EGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDT 1006
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 104/206 (50%), Gaps = 3/206 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I L +A D ++ +LK + ++ P + + +++ G+ + AL++F M+
Sbjct: 556 LINTLYKAGRVDAAWKMFGRLK-NLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTES 614
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
+FN+LL+ + +D +F M +PD +YN +++G + R++ A
Sbjct: 615 GCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYA 674
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ F +M K+ L P VT TLI G+ RV++A+K+ + + ++ ++Q + L++
Sbjct: 675 FWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELME 733
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMD 261
+ E+ A+ F E +V N + D
Sbjct: 734 CILTEAEIEEAISFAEILVCNSVCQD 759
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L +A+ DE ++L ++ V P + I +YG++ A+
Sbjct: 409 NLHTYNTMICGLLKARRLDEALELLENME-SLGVKPTAFSYVLFIDYYGKSGDPAKAIDT 467
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH---- 164
F+ M + ++ + N L + G+I D+F + K +SPD+ +YN+LM
Sbjct: 468 FETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSK 527
Query: 165 -----------------GC--------------VVSRRLEDAWKVFDEMLKRRLQPTLVT 193
GC + R++ AWK+F + +L PT+VT
Sbjct: 528 AGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVT 587
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ L+ GL E ++ +AL+L M P+ F SL+ L + LAL
Sbjct: 588 YNILLTGLGKEGKILKALELFGSMTES-GCPPNTITFNSLLDCLSKNDAVDLAL 640
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 3/212 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y + I LGRA+ D+ I ++ D P+ I + +I A L+ A
Sbjct: 267 RPNIYTYTICIRALGRARRIDDAWGIFKEMD-DEGCGPDVITYTVLIDALCAAGKLDKAK 325
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
+++ +M + + ++ TL++ G ++ + + ME +PD +Y IL+
Sbjct: 326 ELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEAL 385
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S ++ A+ + D M + + P L T+ T+I GL R+DEAL+L E+M + VKP
Sbjct: 386 CKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESL-GVKPT 444
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
A + I G+ + A+ E M + I
Sbjct: 445 AFSYVLFIDYYGKSGDPAKAIDTFETMKKRGI 476
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 3/189 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y++++T LG+ + ++ + ++ P I F +++ + ++ AL++F
Sbjct: 585 VVTYNILLTGLGKEGKILKALELFGSMT-ESGCPPNTITFNSLLDCLSKNDAVDLALKMF 643
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
M+ N V ++NT++ ++ G+ID F M+K++SPD + L+ G V
Sbjct: 644 CRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHG 703
Query: 171 RLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+EDA KV E + + LQ +G L+ + E ++EA+ E ++ +V D V
Sbjct: 704 RVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAE-ILVCNSVCQDDHV 762
Query: 230 FASLIKGLC 238
LIK LC
Sbjct: 763 MLPLIKVLC 771
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 7/187 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRV-VPEEIIFCNVISFYGRARLLEHAL 107
N + Y+++I G++ D ++ ++ K R + I + GR ++ A+
Sbjct: 935 NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGR---IDEAV 991
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGC 166
Q F+E+ + S+N ++N + ++D LF M+ + +SPD +YN L+
Sbjct: 992 QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHL 1051
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++ +++ A K+++E+ L+P++ T+ LI G L D+A + + MM V P+
Sbjct: 1052 GIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMM-VVGCSPN 1110
Query: 227 AQVFASL 233
+ FA L
Sbjct: 1111 TETFAQL 1117
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 106 ALQVFDEMS-SFNVQRTVKSFNTLLNAMLTCG---------------------------- 136
A VFD+ + + + T++S+N L++ +L
Sbjct: 779 AQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLL 838
Query: 137 -------KIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+I+++ DL+ M + P+A ++NI++ V S L A ++ E++
Sbjct: 839 DAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFS 898
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
PT T+G LI GL R ++A+K+ E+M+ Y P++ ++ LI G GE+ A
Sbjct: 899 PTPCTYGPLIDGLLKAGRSEQAMKIFEEMLD-YGCGPNSVIYNILINGFGKSGEIDFACE 957
Query: 249 FKEEMVRNKIEMD 261
++MV+ I D
Sbjct: 958 LFKKMVKEGIRPD 970
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 106/248 (42%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I L A D+ +++ +++ + P+ + + ++ +G+ LE +
Sbjct: 304 DVITYTVLIDALCAAGKLDKAKELYVKMRASSHS-PDRVTYITLMDKFGKVGDLETVKRF 362
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
++EM V ++ L+ A+ G +DR D+ +M K + P+ +YN ++ G +
Sbjct: 363 WNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLK 422
Query: 169 SRRLEDAWKV-----------------------------------FDEMLKRRLQPTLVT 193
+RRL++A ++ F+ M KR + P++
Sbjct: 423 ARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAA 482
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+Y L R+ EA + D+ + + PD+ + L+K G++ A EM
Sbjct: 483 CNASLYTLAETGRISEAEDIFNDLHKC-GLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541
Query: 254 VRNKIEMD 261
+ E D
Sbjct: 542 ISKGCEPD 549
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 6/164 (3%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDA 156
GR + + +EM S ++ + ++ + A+ +ID +F+ M ++ PD
Sbjct: 246 GRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDV 305
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI--YGLCLELRVDEALKLK 214
+Y +L+ + +L+ A +++ +M P VT+ TL+ +G +L E +K
Sbjct: 306 ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDL---ETVKRF 362
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ M V PD + LI+ LC G++ A + M I
Sbjct: 363 WNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGI 406
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-------MTDLFQIMEKYVS 153
R +E + VFD M + R + ++ T+ A+ G I R MT++ I+ Y
Sbjct: 145 RRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAY-- 202
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SYN L+H ++ +A KV+ M+ ++P++ T+ L+ L + + L
Sbjct: 203 ----SYNGLIH-LLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNL 257
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M + ++P+ + I+ L + A G +EM
Sbjct: 258 LEEMKSI-GLRPNIYTYTICIRALGRARRIDDAWGIFKEM 296
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L Y+ II L R D HQ+K + P+ + C +I R +E A++V
Sbjct: 654 DVLTYNTIIYGLIREGRIDYAFWFFHQMKK--FLSPDYVTLCTLIPGVVRHGRVEDAIKV 711
Query: 110 FDE-MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC-- 166
E + +Q + + L+ +LT +I+ +I+ V C + +M
Sbjct: 712 VMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEIL---VCNSVCQDDHVMLPLIK 768
Query: 167 VVSRRLE--DAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
V+ +R + DA VFD+ K + PTL ++ L+ GL ++AL+L EDM
Sbjct: 769 VLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDM 822
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + + + Y ++ L ++ + EV+++L ++ + P+E+ F +++ + L
Sbjct: 348 PSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN-NCAPDEVTFNTIVTSLCQQGL 406
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ A++V D MS + +++++L+ + G++D +L ++ Y PD +Y
Sbjct: 407 VDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTT 466
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + + E A ++ EML P VTF T++ LC + VD A+++ E M
Sbjct: 467 VLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSE-N 525
Query: 222 NVKPDAQVFASLIKGLC 238
PD + +I GLC
Sbjct: 526 GCSPDIVTYNCIIDGLC 542
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y I+ L D+ ++L +LK P+ I + V+ E A ++
Sbjct: 425 DIVTYSSILDGLCDVGRVDDAVELLSRLKS-YGCKPDTIAYTTVLKGLCSTEQWERAEEL 483
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM + +FNT++ ++ G +DR + Q+ E SPD +YN ++ G
Sbjct: 484 MAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCN 543
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++DA ++ ++ +P +VTF TL+ GLC R ++A +L +MMR N PD
Sbjct: 544 ESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMR-SNCPPDEL 602
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
F ++I LC G L+ A+ + M N
Sbjct: 603 TFNTVITSLCQKGLLTQAIETLKIMAEN 630
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 88 IIFCNVI----SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
++ CN++ GR + A +VF ++ TV ++NT++N G+I+
Sbjct: 187 VVPCNILIKRLCSDGR---VSDAERVF---AALGPSATVVTYNTMVNGYCRAGRIEDARR 240
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L M PD ++N L+ V R+ DA VFD+ML R P++VT+ L+ C
Sbjct: 241 LINGMP--FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK 298
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
E +A+ L D MR +PD + LI +C G++ AL + + + DA
Sbjct: 299 ESGYRQAMALL-DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDA 356
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A+ + DEM + + + ++N L+NAM G +D ++ + + PDA +Y ++
Sbjct: 304 QAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVL 363
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
S R ++ ++ EM P VTF T++ LC + VD A+++ D M +
Sbjct: 364 KSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVV-DHMSEHGC 422
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
D ++S++ GLC VG + A+
Sbjct: 423 VADIVTYSSILDGLCDVGRVDDAV 446
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVI-SFYGRARLLEHAL 107
+++ Y+++I + DE IL L H + P+ + + V+ S G R E
Sbjct: 320 DIVTYNVLINAMCNEGDVDEALNILSNLPSHGCK--PDAVTYTPVLKSLCGSERWKE-VE 376
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++ EM+S N +FNT++ ++ G +DR ++ M ++ D +Y+ ++ G
Sbjct: 377 ELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGL 436
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R++DA ++ + +P + + T++ GLC + + A +L +M+ + PD
Sbjct: 437 CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEML-CSDCPPD 495
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +++ LC G + A+ E+M N D
Sbjct: 496 EVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPD 530
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 99/214 (46%), Gaps = 7/214 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ ++ L +++ +Q++ + + P+E+ F VI+ + LL A++
Sbjct: 565 DIVTFNTLLKGLCGVDRWEDAEQLMANMMR-SNCPPDELTFNTVITSLCQKGLLTQAIET 623
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M+ +++ +++A+L GK +L M +PD +YN ++ +
Sbjct: 624 LKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG-TPDLITYNTVISNLTKA 682
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN--VKPDA 227
++E+A + M+ L P T+ +L YG+C E D A+++ + RV + + PD
Sbjct: 683 GKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRM---LRRVQDTGLSPDT 739
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ G C LA+ MV + D
Sbjct: 740 TFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPD 773
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 4/165 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y +++ L +A + Q L L T P+ I + VIS +A +E AL +
Sbjct: 635 NSSTYSIVVDALLKAG---KAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDL 691
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M S + ++ +L + DR + + + + +SPD YN ++ G
Sbjct: 692 LRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCR 751
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
RR + A F M+ P T+ L+ L +DEA +L
Sbjct: 752 DRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRL 796
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + M E ++L VP+++ +C++I+ +E AL++F+E
Sbjct: 293 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N+L+ + G I + + ++ E+ PD +YNI+++G +
Sbjct: 352 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 411
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA V ++ + + P + TF TLI G C L++D AL+L E M Y + PD + S
Sbjct: 412 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTITYNS 470
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
++ GLC G+++ +EM+
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMI 492
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 10/184 (5%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ F +I Y + L+ ALQ+ + M + + ++N++LN + GK++ + +
Sbjct: 427 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 486
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
FQ ++ K P+ +YNIL+ S ++E+A KV +M + L P V+F TLIYG C
Sbjct: 487 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 546
Query: 203 LELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ A KL+E + Y+ D F +LI + +A +EM+
Sbjct: 547 RNGDLEGAYLLFQKLEE---KGYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGH 601
Query: 259 EMDA 262
D+
Sbjct: 602 RADS 605
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDA 156
A L A+++ D M ++ V V ++NTL+ + C K + M L ++M + PD
Sbjct: 234 AGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGL--CKKSMPQEAMHYLRRMMNQGCLPDD 290
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ G +++A ++ + + + P VT+ +LI GLC E V+ AL+L +
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 350
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +KPD V+ SL+KGLC G + AL EM D
Sbjct: 351 A-QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 394
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 37/200 (18%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ +++ +++ L+ HALQV +EM+ ++++N ++N + G I T
Sbjct: 356 IKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415
Query: 143 -------------DLF-----------------------QIMEKYVSPDACSYNILMHGC 166
D+F ++ E ++PD +YN +++G
Sbjct: 416 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGL 475
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ + + F EM+ + P +T+ LI C +++EA K+ M + + PD
Sbjct: 476 CKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ-EGLHPD 534
Query: 227 AQVFASLIKGLCAVGELSLA 246
A F +LI G C G+L A
Sbjct: 535 AVSFNTLIYGFCRNGDLEGA 554
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHAL---QV 109
Y ++ L + +Q+ Q+ H T V P F V+ + R +LE L +V
Sbjct: 154 YCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 212
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
S N+ ++N + + G++ L M Y PD +YN L+ G
Sbjct: 213 IQRGMSINL----FTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKK 268
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++A M+ + P T+ T+I G C V EA +L +D + PD
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV-FKGFVPDQVT 327
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLCA G++ AL E I+ D
Sbjct: 328 YCSLINGLCAEGDVERALELFNEAQAKGIKPD 359
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LK N + Y+++I R+ +E +++ ++ + + P+ + F +I + R L
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 551
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
E A +F ++ T +FNTL+ A + +F +++ K D+ +Y +L
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 611
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + ++ A+ EM+K+ P++ TFG +I L + RV +A+ + M+++
Sbjct: 612 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 669
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ A G++ D F+ M+ + P A +YN +M V + + A KV+ ML +
Sbjct: 57 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P L T + CL R AL+L +R + A + +++ GL A G A
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRL----LRALPHR-GAVAYCTVVCGLYAHGHTHDAR 171
Query: 248 GFKEEMVRNKI 258
++M+ +
Sbjct: 172 QLFDQMLHTHV 182
>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 458
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 17/241 (7%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
L ++ D + ALQL + + F +++ Y +I + + ++ +
Sbjct: 149 GLCKVGGDTRAALQLLR--------------QAFEPDVVMYTTVIDNMCKDTFVNDAFDL 194
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+++ + + P + + +I + LE AL +F +M S N+ V +FN L++A
Sbjct: 195 YYEMVA-SGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISENINPNVYTFNGLVDAFC 253
Query: 134 TCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
GKI+ ++ +MEK + D +Y+ LM+G + + A +F M +R L +
Sbjct: 254 KEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVR 313
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ +I C VDEA+KL E+ M + + PD + +LI GLC G LS A+ +E
Sbjct: 314 SYNIMINEFCKMKMVDEAIKLFEE-MPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDE 372
Query: 253 M 253
M
Sbjct: 373 M 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ T+++ M ++ DL+ +++ +SP+ +Y L+ G V +LE+A +F +M+
Sbjct: 175 YTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMI 234
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ P + TF L+ C E +++EA + MM ++K D ++SL+ G C V E+
Sbjct: 235 SENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMME-KDLKSDVVAYSSLMNGYCLVNEV 293
Query: 244 SLALGFKEEMVRNKIEMD 261
A + M ++ D
Sbjct: 294 FKAQSIFKTMAERELSYD 311
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
S+ TL+N + G R Q++ + PD Y ++ + DA+ ++ EM+
Sbjct: 142 SYGTLINGLCKVGGDTRAA--LQLLRQAFEPDVVMYTTVIDNMCKDTFVNDAFDLYYEMV 199
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ P +VT+ LI G C+ +++EAL L + M+ N+ P+ F L+ C G++
Sbjct: 200 ASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMIS-ENINPNVYTFNGLVDAFCKEGKI 258
Query: 244 SLALGFKEEMVRNKIEMD 261
A M+ ++ D
Sbjct: 259 EEAKNVLNTMMEKDLKSD 276
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 25 ALQLFK---NPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
AL LFK + N NPN + ++ ++ + +E + +L+ + +
Sbjct: 226 ALGLFKKMISENINPN-------------VYTFNGLVDAFCKEGKIEEAKNVLNTM-MEK 271
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ + + + ++++ Y + A +F M+ + V+S+N ++N +D
Sbjct: 272 DLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMINEFCKMKMVDEA 331
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF+ M K + PD +Y+ L+ G S RL A ++ DEM R P ++T+ ++
Sbjct: 332 IKLFEEMPLKQIFPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDV 391
Query: 201 LC 202
LC
Sbjct: 392 LC 393
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
++P ++F ++ + +AR L A +F M F V + +N L++ G +
Sbjct: 298 AELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLE 357
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L ME +SPD +Y IL++G + ++ +A ++F +M R+ P+ T+ +LI+
Sbjct: 358 AVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIH 417
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +++AL L +M V+P+ F++LI G C V ++ A+G EM I
Sbjct: 418 GYCKEYNMEQALDLCSEMT-ASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIV 476
Query: 260 MD 261
D
Sbjct: 477 PD 478
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ L R + FD V + +QL +VP+ I+ + + L ++ DEM+S
Sbjct: 170 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
++ V + + + K++ +F++M+K+ V P+ +Y+ ++ G + + A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ ++ E+L L P +V FGTL+ G C + A L M++ + V P+ V+ LI
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK-FGVDPNLYVYNCLIH 347
Query: 236 GLCAVGELSLALGFKEEM 253
G C G + A+G EM
Sbjct: 348 GHCKSGNMLEAVGLLSEM 365
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ L P ++ Y ++I L E ++ ++K++ R+ P + ++I Y +
Sbjct: 366 ESLNLSP---DVFTYTILINGLCIEDQVAEANRLFQKMKNE-RIFPSSATYNSLIHGYCK 421
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACS 158
+E AL + EM++ V+ + +F+TL++ I L F++ K + PD +
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ +++A +++ +ML+ + P TF L+ G E R+ A+ ++
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENN 541
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + F LI+GLC G + A F +M
Sbjct: 542 QQRSCWNHVG-FTCLIEGLCQNGYILRASRFFSDM 575
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+D MT L + P+ Y I + ++E+A K+F+ M K + P L T+ +
Sbjct: 222 LDEMTSLG------IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C V +A L ++++ V + P+ VF +L+ G C EL A MV+
Sbjct: 276 IDGYCKTGNVRQAYGLYKEIL-VAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFG 334
Query: 258 IE 259
++
Sbjct: 335 VD 336
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 110/209 (52%), Gaps = 5/209 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ + +I +E +++Q+ + + P+ +I+ +I + +++A
Sbjct: 137 FEPDIFTFTSLINGFCLGNRIEEAMSMVNQMV-EMGIKPDVVIYTTIIDSLCKNGHVDNA 195
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMH 164
L +F++M ++ ++ V + +L+N + G+ R DL +M++ + PD ++N L+
Sbjct: 196 LSLFNQMENYGIRPDVVMYTSLVNGLCNSGRW-RDADLLLRGMMKRKIKPDVITFNALID 254
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
V +L DA ++++EM++ + P + T+ +LI GLC+E R+DEA ++ +M
Sbjct: 255 AFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFY-LMETKGCF 313
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + SLI G C ++ A+ EM
Sbjct: 314 PDVVAYTSLINGFCKCKKVEDAMKIFYEM 342
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LF N E ++P +++ Y ++ L + + + +L + ++
Sbjct: 195 ALSLF-------NQMENYGIRP---DVVMYTSLVNGLCNSGRWRDADLLLRGMMK-RKIK 243
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I F +I + + L A ++++EM ++ + ++ +L+N + G++D +
Sbjct: 244 PDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQM 303
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +ME K PD +Y L++G +++EDA K+F EM ++ L +T+ TLI G L
Sbjct: 304 FYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGL 363
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ + A ++ M+ V P+ + + L+ LC G+++ AL E+M + +I+
Sbjct: 364 VGKPNVAQEVFGHMVS-RGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREID 418
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + K ++ +I +++ + I + +I +G A +V
Sbjct: 315 DVVAYTSLINGFCKCKKVEDAMKIFYEMSQKG-LTGNTITYTTLIQGFGLVGKPNVAQEV 373
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHG 165
F M S V ++++N LL+ + GK+++ +F+ M+K V P+ +YN+L+HG
Sbjct: 374 FGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHG 433
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +LE A VF +M KR + ++T+ +I G+C +V +AL L + VKP
Sbjct: 434 LCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPS-KGVKP 492
Query: 226 DAQVFASLIKGL 237
+ + ++I GL
Sbjct: 493 NVVTYTTMISGL 504
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
++R +P I F +++ + + + + + + V + + N L+N +
Sbjct: 64 ESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPC 123
Query: 140 RMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ L ++M+ PD ++ L++G + R+E+A + ++M++ ++P +V + T+I
Sbjct: 124 LASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTII 183
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC VD AL L + M Y ++PD ++ SL+ GLC G A M++ KI
Sbjct: 184 DSLCKNGHVDNALSL-FNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKI 242
Query: 259 EMDA 262
+ D
Sbjct: 243 KPDV 246
>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 806
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 17/255 (6%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P S + +LR + D +L+ FK+ + + F++ L Y+ +I KLGR
Sbjct: 38 PVSESHVVKVLRQEHDIVSSLEYFKSLSNS---------GTFKHTHLTYETMIDKLGRNN 88
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
D V +L Q+K + +E+ F VI Y R+ L E L++F + F + +VK +
Sbjct: 89 EMDGVSYLLQQMKLENVPCSQEL-FQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIY 147
Query: 126 NTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N +L+A+L+ + L+ M+ + + P+ +YN+L+ + +++ A K+ EM
Sbjct: 148 NLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSN 207
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+ P V++ T+I +C VD+A +L +P V+ +LI G+C
Sbjct: 208 KGCDPDDVSYTTVISSMCKLGDVDKAREL------AMKFEPVVPVYNALIHGVCKECRFK 261
Query: 245 LALGFKEEMVRNKIE 259
A EMV ++
Sbjct: 262 EAFDLMNEMVDRGVD 276
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 96/204 (47%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + + F E +++++ D V P I + VIS +E +L VF M
Sbjct: 247 YNALIHGVCKECRFKEAFDLMNEMV-DRGVDPNVISYSTVISCLSDMGNVELSLAVFGRM 305
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V++F +L+ G++ L+ +M + VSP+ +YN L+HG +
Sbjct: 306 FVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNM 365
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A V+++M K ++P + T+ T+IYG + A + M+ +P+ V+
Sbjct: 366 DEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINC-GCRPNVVVYTC 424
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
++ LC + A + M+ +
Sbjct: 425 MVDVLCQMSMFDQAFDLIDNMISD 448
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 2/212 (0%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y ++ L + MFD+ ++ + D P I F N I RA +E A+
Sbjct: 416 RPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDG-CPPTVITFNNFIKGLCRAGRVEWAM 474
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
V D+M + ++++N LL+ + L ++ E+ V D +YN +M+G
Sbjct: 475 NVLDQMEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGF 534
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + ++ +ML ++ +T T + C +V A+K+ +++ + D
Sbjct: 535 SFNGMHQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRAD 594
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ G+C A+ + EM++ I
Sbjct: 595 IITHTIILWGICNWLGTEEAVVYLHEMLKRGI 626
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 38/204 (18%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVS 153
F+ R R+ + A+ +++ M V V ++NTL++ + + G +D ++ MEK +
Sbjct: 323 GFFVRGRVGD-AVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIR 381
Query: 154 PDACSYNILMHG------------------------------CVVS-----RRLEDAWKV 178
P+ +Y+ +++G C+V + A+ +
Sbjct: 382 PNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDL 441
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
D M+ PT++TF I GLC RV+ A+ + D M Y P+ + + L+ GL
Sbjct: 442 IDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVL-DQMEKYECLPNIRTYNELLDGLF 500
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
A G E+ K+E D
Sbjct: 501 RANAFREACGLIRELEERKVEFDC 524
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 5/172 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQ 108
N+ Y+ ++ L RA F E ++ +L+ R V + + N I + + + + LQ
Sbjct: 488 NIRTYNELLDGLFRANAFREACGLIRELEE--RKVEFDCVTYNTIMYGFSFNGMHQQVLQ 545
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGC 166
+ +M ++ + NT +NA GK+ + + EK D ++ I++ G
Sbjct: 546 LLGKMLVNGIKLDTITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGI 605
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
E+A EMLKR + P + T+ L+ G +L +++ +D++
Sbjct: 606 CNWLGTEEAVVYLHEMLKRGIFPNIATWNVLVRGFFSKLGHMGPIRILDDII 657
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 112/211 (53%), Gaps = 7/211 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+L Y+ +I + + + Q+L + + ++ P+ + F +I+ + + R + A ++
Sbjct: 44 NVLTYNCMIDSFCHSGRWSDADQLLRHMI-EKQINPDIVTFSALINAFVKERKVSEAEEI 102
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
+ EM +++ T ++N++++ ++D RM D + K SPD +++ L++G
Sbjct: 103 YKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLD--SMASKGCSPDVVTFSTLINGY 160
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
++R+++ ++F EM +R + VT+ TLI+G C +D A L +M+ V PD
Sbjct: 161 CKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISC-GVAPD 219
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
F ++ GLC+ EL A E++ +++
Sbjct: 220 YITFHCMLAGLCSKKELRKAFAILEDLQKSE 250
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
+A +F EM + V ++N ++++ G+ L + M EK ++PD +++ L+
Sbjct: 28 NAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALI 87
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ V R++ +A +++ EML+ + PT +T+ ++I G C + RVD+A ++ D M
Sbjct: 88 NAFVKERKVSEAEEIYKEMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRML-DSMASKGC 146
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
PD F++LI G C + + EM R I
Sbjct: 147 SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGI 181
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 113/211 (53%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++ A+
Sbjct: 96 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 154
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++ G
Sbjct: 155 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 214
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + ++A ++ +EM+ + LQP ++T+ T+ GLC E R+++A++ +DM ++P
Sbjct: 215 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM----GIRP 270
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ ++I GLC E A+ M+ N
Sbjct: 271 NTVLYNAIILGLCKRRETHSAIDLFAYMIGN 301
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A+++ DEM + ++N ++N + G++D + + + Y P+ SYNI+
Sbjct: 9 KQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIV 68
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + R EDA ++ EM ++ P +VTF LI LC + V+ AL++ E + + Y
Sbjct: 69 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK-YG 127
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P++ + L+ C ++ A+ F + MV
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 159
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ + + D+ + L L P + + V+ A E A ++
Sbjct: 26 DIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEEL 84
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM V +FN L++ + G ++ ++ + + KY +P++ SYN L+H
Sbjct: 85 MGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK 144
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++ A D M+ R P +V++ TL+ LC VD A++L ++ P
Sbjct: 145 QKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ-LKDKGCAPVLI 203
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I GL G+ AL EMV ++ D
Sbjct: 204 SYNTVIDGLTKAGKTKEALELLNEMVSKGLQPD 236
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 38/185 (20%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R+ D ++LHQLK D P I + VI +A + AL++
Sbjct: 166 DIVSYNTLLTALCRSGEVDVAVELLHQLK-DKGCAPVLISYNTVIDGLTKAGKTKEALEL 224
Query: 110 FDEMSSFNVQRTVKSFNTLL----------NAMLTCGKIDRMT----------------- 142
+EM S +Q + +++T+ +A+ GK+ M
Sbjct: 225 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 284
Query: 143 --------DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLV 192
DLF M P+ +Y IL+ G +++A + DE+ R ++ +L+
Sbjct: 285 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLI 344
Query: 193 TFGTL 197
G +
Sbjct: 345 NKGAI 349
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 109/211 (51%), Gaps = 7/211 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH-DTRVV-PEEIIFCNVISFYGRARLLE 104
F++N + Y +I L + E + L L+ D ++V P +++ +I + + +
Sbjct: 188 FQFNQISYGTLIDGLCKV---GETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVN 244
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A ++ EM S + V +++ L++ T GK+ DLF +++ + + PD ++NIL+
Sbjct: 245 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILV 304
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
S ++ A K+ DEM R P +VT+ +++ LC RVD+A+ L ++ +
Sbjct: 305 DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTK-LKDQGI 363
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+P+ + LI GLC G+L A E+++
Sbjct: 364 RPNMHTYTILIDGLCTSGKLEDARNIFEDLL 394
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I+ + + +++ + + P+ F ++ + ++ + +AL++
Sbjct: 261 NVVTYSALISGFFTVGKLKDAVDLFNKMISE-NIKPDVYTFNILVDVFCKSGKISYALKL 319
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM + +++++L+A+ ++D+ L ++ ++ + P+ +Y IL+ G
Sbjct: 320 VDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCT 379
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +LEDA +F+++L + T+VT+ + YG C + DEA L M PDA+
Sbjct: 380 SGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEE-NGCIPDAK 438
Query: 229 VFASLIKGLCAVGELSLA 246
+ + L GE +A
Sbjct: 439 TYELIKLSLFKKGENDMA 456
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A+ +F+ + N FN +L +++ + L + ME + + P+ + NI
Sbjct: 68 VDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ + A+ VF ++LK P +TF TLI GLCL+ ++ +AL D +
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNF-HDKLVAL 186
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ + + +LI GLC VGE AL
Sbjct: 187 GFQFNQISYGTLIDGLCKVGETRAAL 212
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 94/220 (42%), Gaps = 7/220 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + NL+ Y T D+ + + L P I F ++ +++
Sbjct: 44 PCSSSKINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPT-PPAIEFNKILGSLVKSKH 102
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
L + +M ++ + + N L+N G I +F +I++ +P+ ++
Sbjct: 103 YHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTT 162
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + ++ A D+++ Q +++GTLI GLC +V E + + RV
Sbjct: 163 LIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLC---KVGETRAALDLLRRVD 219
Query: 222 N--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
V+P+ +++++I G+C ++ A EMV I
Sbjct: 220 GKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGIS 259
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVLMIDSYGKEGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L ++ G+ F +++ + P ++N+++ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVE-MKGKNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 106/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGKEGIVQESVKLFQKMEELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXGIEPTRHTFNVMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + +SPD +YN +++G +++E+A K F EM + ++PT+VT+ TLI G
Sbjct: 171 RFFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +KP+A +++L+ GLC ++S A +EMV I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM N++ TV ++ TL+ ++ ++D
Sbjct: 181 ISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGYVSVDQVDDAL 240
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTLIYG 200
L + M+ Y + P+A +Y+ L+ G + ++ +A + EM+ + + PT + F LI
Sbjct: 241 RLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISS 300
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++ I
Sbjct: 301 QCKAGNLDAAADVLKSMIRL-SVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDI 357
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 111/208 (53%), Gaps = 3/208 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +N + II LGRA + + IL + + +E ++ +I YG+ +++ +
Sbjct: 41 FEHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVMMIDSYGKQGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L +L G+ F +++ + + P ++ +L+ G
Sbjct: 100 VKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGIEPTRXTFXVLIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P +VT+ T+I G + +EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKXEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG +V ++ AL EEM
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEM 246
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 72/272 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ +I GRA L HA
Sbjct: 12 HELVYNVLHSAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKSFNTL---------- 128
+++F +M V+RT+KS++ L
Sbjct: 72 PKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRY 131
Query: 129 ------LNAMLT-------------------CGKIDRMTDLFQIME-KYVSPDACSYNIL 162
N ML+ GK++ F+ M+ + +SPD +YN +
Sbjct: 132 MMAKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++ E+A K F EM R ++PT+VT+ TLI G +VD+AL+L E+ M+ +
Sbjct: 192 INGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEE-MKGFG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KP+A +++L+ GLC ++S A +EM+
Sbjct: 251 IKPNAIXYSTLLPGLCNAEKMSEARSILKEMM 282
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 131/274 (47%), Gaps = 46/274 (16%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P +A++L+ QKDP AL +F + + F++ L Y +I KLG FD
Sbjct: 7 PKHVAAVLKYQKDPLKALSIFNS---------VKKEDGFKHTFLTYKRMIEKLGFHGEFD 57
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
++++L +++ + E ++ + + YGR ++ A+ VF+ M +N + ++ S+N +
Sbjct: 58 AMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAI 117
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM---------------------HGC 166
+N ++ G ++ ++ ++ + ++PD C++ I + GC
Sbjct: 118 MNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGC 177
Query: 167 ---------VVSRRLE-----DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
V+S E +A+++F++ML+ + P + TF L++ LC + + E K
Sbjct: 178 ELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEK 237
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
L +++ V P+ F I+GLC G L A
Sbjct: 238 LLNKVLK-NGVCPNLFTFNIFIQGLCRKGVLEGA 270
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 3/186 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + + +IL K VP+E +C++I + ++HAL +F+E
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKG-FVPDEFTYCSLIIGVCQDGDIDHALALFEEA 354
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
++ ++ +NTL+ + G + + L M K +SPD +YN++++G +
Sbjct: 355 LGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCV 414
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA + + + + P + TF TLI G C L++D A+ + D M + V PD + S
Sbjct: 415 SDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGIL-DSMWSHGVTPDVITYNS 473
Query: 233 LIKGLC 238
++ GLC
Sbjct: 474 ILNGLC 479
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 40/249 (16%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ + + P ++ Y+L+I L + + +L+ +P+ F +I
Sbjct: 387 NDMSKEGMSP---DIWTYNLVINGLCKMGCVSDANNLLNAAIAKG-YLPDIFTFNTLIDG 442
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPD 155
Y + +++A+ + D M S V V ++N++LN + K + + + F+ IMEK P+
Sbjct: 443 YCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPN 502
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL+ +R++ +A + +E+ R L P V+FGT+I G C +DEA +L
Sbjct: 503 IITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFR 562
Query: 216 DMMRVYNV-----------------------------------KPDAQVFASLIKGLCAV 240
M + Y + PD+ + +I G C V
Sbjct: 563 RMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKV 622
Query: 241 GELSLALGF 249
G ++ F
Sbjct: 623 GNVNSGYDF 631
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 4/182 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I L +A+ E +L +++ + ++P+ + F VIS + L+ A Q+
Sbjct: 502 NIITYNILIESLCKARKVTEALDLLEEIR-NRGLIPDPVSFGTVISGFCNNGDLDEAYQL 560
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F M + + TV ++N ++NA +D LF M +K PD+ +Y +++ G
Sbjct: 561 FRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFC 620
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + + ++ P+L TFG +I LC++ RV EA+ + M+R V P+A
Sbjct: 621 KVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRT-GVVPEA 679
Query: 228 QV 229
V
Sbjct: 680 VV 681
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 95/215 (44%), Gaps = 4/215 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L +A ++V + ++ + +P I + +I +AR + AL +
Sbjct: 467 DVITYNSILNGLCKAAKPEDVMETF-KMIMEKGCLPNIITYNILIESLCKARKVTEALDL 525
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCV 167
+E+ + + SF T+++ G +D LF+ ME+ + +YNI+++
Sbjct: 526 LEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFS 585
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ A K+F EM + P T+ +I G C V+ + + V P
Sbjct: 586 EKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFV-PSL 644
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F +I LC + A+G MVR + +A
Sbjct: 645 TTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEA 679
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++ K + PD +YN +++G +++DA ++ + + P T+ +LI G+C
Sbjct: 281 LHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQ 340
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +D AL L E+ + +KP ++ +LIKGL G + AL +M + + D
Sbjct: 341 DGDIDHALALFEEALG-KGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPD 397
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 94/220 (42%), Gaps = 10/220 (4%)
Query: 50 NLLHYDLIITKLGRAKMFD-------EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
NL +++ I L R + + E + LH++ + + P++ + +I Y +
Sbjct: 250 NLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMV-NKGLEPDDFTYNTIIYGYSKVGK 308
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
++ A ++ + ++ +L+ + G ID LF+ + K + P YN
Sbjct: 309 IQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNT 368
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + A ++ ++M K + P + T+ +I GLC V +A L +
Sbjct: 369 LIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAI-AK 427
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD F +LI G C ++ A+G + M + + D
Sbjct: 428 GYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPD 467
>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
Length = 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II L + E + ++++ D V P+E+ F +I +A + A ++F
Sbjct: 209 YNCIIDTLFKKGKIHEAELFFNRMEKDG-VRPQEVTFTVLIDGLCKANRVARAKEIFFSY 267
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+V + L++ G +D +F++M + +P+ S NIL++G ++RL
Sbjct: 268 LESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRL 327
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A +VF+E++KR+ +P +VT+ T + GLC RVD+A ++ M+ PD ++ +
Sbjct: 328 SQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVL-CMLVDKGGTPDVVMYTA 386
Query: 233 LIKGLCAVGELSLA 246
LI GLC++G L A
Sbjct: 387 LISGLCSLGRLDEA 400
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 19/241 (7%)
Query: 25 ALQLF---KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
A+QLF K P P+ + Y+ +I L R + E QQ +L +
Sbjct: 120 AIQLFGEMKAPGCAPSTST-------------YNTLIGGLCRVERLGEAQQFYERL-LSS 165
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
I + ++ + +A + A+++ +E+ + T +N +++ + GKI
Sbjct: 166 GAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEA 225
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
F MEK V P ++ +L+ G + R+ A ++F L+ P++V L+ G
Sbjct: 226 ELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDG 285
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C VDEA ++ E +M P+ LI GLC LS A EE+V+ + +
Sbjct: 286 FCKYGGVDEAWRIFE-LMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKP 344
Query: 261 D 261
D
Sbjct: 345 D 345
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 6/199 (3%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ L DE ++ H L D +P +++ +S GRA E L+V M
Sbjct: 5 IVLCLCHVGKLDEALELFHSLVSDGCGLPADLLV-RELSKAGRA---EECLKVVKLMLDR 60
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDA 175
R N ++++ ID+ FQ ++ + + SYNIL++ ++R+++A
Sbjct: 61 QQLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEA 120
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++F EM P+ T+ TLI GLC R+ EA + E ++ + L+
Sbjct: 121 IQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLS-SGAGASFITYNILVD 179
Query: 236 GLCAVGELSLALGFKEEMV 254
G C + A+ E+V
Sbjct: 180 GFCKADRVPEAVELLNELV 198
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + +++I L +AK + +++ ++ + P+ + + + RA ++ A QV
Sbjct: 310 NDVSCNILINGLCKAKRLSQAREVFEEVVK-RQAKPDVVTYSTFMDGLCRAHRVDQARQV 368
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI--MEKYVSPDACSYNILMHGCV 167
+ V + L++ + + G++D +F++ +P+ + N+L++G
Sbjct: 369 LCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFG 428
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
++ RL++A ++F ++R +QP TF +
Sbjct: 429 LAGRLDEARELFQRFVERGVQPDCRTFSAM 458
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 109/216 (50%), Gaps = 6/216 (2%)
Query: 50 NLLHYDLII---TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
N++ Y+ ++ K G A + + + ++ + ++ P E+ F +I + + + A
Sbjct: 234 NVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN-KICPNEVTFNTLIDGFCKDENVAAA 292
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+ F+EM ++ + ++N+L+N + GK++ DL+ M + P+ +YN L++G
Sbjct: 293 KKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALING 352
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +++A KVFD++ K+ L P ++TF T+I C E ++E L M+ + P
Sbjct: 353 FCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLD-EGILP 411
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + LI GLC +L A EM ++ D
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGD 447
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N++ Y+ +I + KM E ++ + +VP I F +I Y + ++
Sbjct: 339 LKP---NIVTYNALINGFCKKKMMKEATKVFDDVSKQ-ELVPNVITFNTMIDAYCKEGMM 394
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
E + M + V ++N L+ + + +L ME K + D +YNIL
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + +A K+ +EM L+P VT+ TL+ G C+E ++ AL ++ M +
Sbjct: 455 IDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERK 514
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+P+ + LIKG C + +L A G EM+
Sbjct: 515 -QPNVVTYNVLIKGYCKINKLEAANGLLNEMLE 546
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 112/219 (51%), Gaps = 6/219 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ Q LKP N++ Y+ +I L +E + ++ + P + + +I+ + +
Sbjct: 300 QKQGLKP---NIVTYNSLINGLCNNGKLEEAIDLWDKMV-GLGLKPNIVTYNALINGFCK 355
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
++++ A +VFD++S + V +FNT+++A G ++ L M ++ + P+ +
Sbjct: 356 KKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVST 415
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + L+ A ++ +EM + L+ +VT+ LI GLC + A KL +M
Sbjct: 416 YNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMF 475
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +KP+ + +L+ G C G+L AL + M + +
Sbjct: 476 NL-GLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKER 513
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
S N L+ V ++ D V+ EM+KRR+ L TF I GLC ++++A ED
Sbjct: 167 SCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIED- 225
Query: 218 MRVYNVKPDAQVFASLIKGLC---AVGELSLALGFKEEMVRNKI 258
M+ + + P+ + +L+ G C + G++ A F +EM+ NKI
Sbjct: 226 MKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKI 269
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 85/188 (45%), Gaps = 4/188 (2%)
Query: 70 VQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V + H L D R +I ++ Y + L A + F + + ++ S N L
Sbjct: 112 VSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPL 171
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L+A++ KI + ++ +++++ + + ++NI ++G + +L A ++M +
Sbjct: 172 LSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGI 231
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDM--MRVYNVKPDAQVFASLIKGLCAVGELSL 245
P +VT+ TL+ G C + K + M M + P+ F +LI G C ++
Sbjct: 232 SPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAA 291
Query: 246 ALGFKEEM 253
A EEM
Sbjct: 292 AKKAFEEM 299
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 75/147 (51%), Gaps = 4/147 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N+ Y+ +I L R + +++L+++ + + + +++ N+ I + +A +
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEM--ENKGLKGDVVTYNILIDGLCKNDKSRNAEK 469
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
+ +EM + ++ ++NTL++ GK+ ++ MEK P+ +YN+L+ G
Sbjct: 470 LLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYC 529
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTF 194
+LE A + +EML++ L P T+
Sbjct: 530 KINKLEAANGLLNEMLEKGLNPNRTTY 556
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 10/216 (4%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ ++T LGR + + ++L +++ ++ P + F +++ +AR ++ ALQVFD +
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEME-KRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLR 343
Query: 115 S------FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHGC 166
V+ V FNTL++ + GK + L + M+ P+ +YN L+ G
Sbjct: 344 GKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGF 403
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + A ++F +M + +QP ++T TL+ GLC RV A++ + M+ +K +
Sbjct: 404 FKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNE-MKGKGLKGN 462
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
A + +LI C V ++ A+ EEM+ + DA
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDA 498
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 103/212 (48%), Gaps = 6/212 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N Y +I+ + Q ++ + P+ +++ ++IS A +
Sbjct: 457 KGLKGNAATYTALISAFCGVNNINRAMQCFEEML-SSGCSPDAVVYYSLISGLCIAGRMN 515
Query: 105 HALQVFDEM--SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
A V ++ + F++ R+ +N L++ K++R+ +L ME+ V PD +YN
Sbjct: 516 DASVVVSKLKLAGFSLDRSC--YNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNT 573
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ + A KV ++M+K L+P++VT+G +I+ C + VDE +K+ +M
Sbjct: 574 LISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTS 633
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V P+ ++ LI LC ++ A+ E+M
Sbjct: 634 KVPPNTVIYNILIDALCRNNDVDRAISLMEDM 665
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I L + ++ +L ++K P + + +I + +A + A ++F +M
Sbjct: 360 FNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQM 419
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ VQ V + NTL++ + G++ R + F M+ K + +A +Y L+ +
Sbjct: 420 NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNI 479
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA------LKL------------- 213
A + F+EML P V + +LI GLC+ R+++A LKL
Sbjct: 480 NRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVL 539
Query: 214 ------KEDMMRVY---------NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
K+ + RVY VKPD + +LI L G+ + A E+M++ +
Sbjct: 540 ISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGL 599
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+IS + + + LE ++ EM V+ ++NTL++ + GK ++MEK +
Sbjct: 539 LISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYL---GKTGDFATASKVMEKMI 595
Query: 153 S----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRV 207
P +Y ++H + +++ K+F EM ++ P V + LI LC V
Sbjct: 596 KEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDV 655
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
D A+ L EDM +V V+P+ + +++KG+
Sbjct: 656 DRAISLMEDM-KVKRVRPNTTTYNAILKGV 684
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL- 213
DA S N L+ R ++ ++ EM KR+++P++VTFG L+ LC R+DEAL++
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVF 339
Query: 214 ----KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ V+PD +F +LI GLC VG+ L EEM I
Sbjct: 340 DRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNI 388
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYG 98
E +KP + + Y+ +I+ LG+ F +++ ++ K R P + + +I Y
Sbjct: 560 EETGVKP---DTITYNTLISYLGKTGDFATASKVMEKMIKEGLR--PSVVTYGAIIHAYC 614
Query: 99 RARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDA 156
+ ++ +++F EM S+ V +N L++A+ +DR L + M+ K V P+
Sbjct: 615 SKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNT 674
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN ++ G + L A+++ D M++ +P +T L L V E KLK
Sbjct: 675 TTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSA---VGEIEKLKH 730
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ II L + + + Q +++ ++P+ I + ++++ Y +A L+ AL +
Sbjct: 342 TVVTYNAIIHGLLKCEQAEAAQVKFAEMR-AMGLLPDVITYNSLLNRYCKAGNLKEALWL 400
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++ + TV ++NTL++ G + L + M E+ PD C+Y ILM+G
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRK 460
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKP 225
R L A + FDEML + LQP + T I C EL + A +L+E MM + + P
Sbjct: 461 VRNLAMAREFFDEMLSKGLQPDCFAYNTRI---CAELTLSSTPMAFQLREVMM-LKGIYP 516
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +I GLC G L A K +MV + ++ D
Sbjct: 517 DTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPD 552
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 4/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++ Y+ ++ + DE +L +++ ++ F VISF R LE+A++
Sbjct: 236 TIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVK 295
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+ D M + + + ++N L+ A+L G + + L ME + + P +YN ++HG +
Sbjct: 296 LVDSMR-LSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLL 354
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ E A F EM L P ++T+ +L+ C + EAL L D+ R + P
Sbjct: 355 KCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRA-GLAPTV 413
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C +G+L+ A KEEMV
Sbjct: 414 LTYNTLIDGYCRLGDLAEARRLKEEMV 440
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 4/216 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LK + + Y++II L + + +++ ++ D + P+ I + +I +
Sbjct: 507 EVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDG-LQPDCITYTCLIHAHCE 565
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
LL A ++ + M S +Q +V ++ L++ G + F ++++ + P+ +
Sbjct: 566 RGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEIT 625
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+H ++ R A++ F EML+R L P T+ LI G C E +A++L +M
Sbjct: 626 YNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMH 685
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + PD +L KG G + A+ + E +V
Sbjct: 686 Q-NGIPPDYCTHNALFKGF-DEGHMYHAIEYMENIV 719
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V+PD N ++ + R +D V+ EML+ R++PT+VT+ TL+ E R DEA
Sbjct: 198 VAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEAS 257
Query: 212 KLKEDM 217
L ++M
Sbjct: 258 MLLKEM 263
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 110/209 (52%), Gaps = 6/209 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A+ + P N+ Y+ +I L + E +L+++ ++P + F +I+ + +
Sbjct: 72 KAKGISP---NIFTYNSLIQGLCNFSRWREASAMLNEM-MSLNIMPNIVTFSLLINIFCK 127
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ A V M+ V+ V ++++L+N ++ LF +M K PD S
Sbjct: 128 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFS 187
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G ++R+ +A ++F+EM+ + L P +V++ TLI GLC R+ EA L ++M+
Sbjct: 188 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 247
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLAL 247
N+ PD ++ L+ G C G L+ A
Sbjct: 248 TNGNL-PDLCTYSILLDGFCKQGYLAKAF 275
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + + +E I +K + P + ++I A +
Sbjct: 44 DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG-ISPNIFTYNSLIQGLCNFSRWREASAM 102
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM S N+ + +F+ L+N G + + + M E V P+ +Y+ LM+G +
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+FD M+ + +P + ++ LI G C R+ EA +L +M+ + PD
Sbjct: 163 QAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH-QGLTPDIV 221
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI GLC +G L A + M+ N
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTN 249
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRR 171
M + Q V ++ T++N + G+ LF+ M E PD +Y+ ++ RR
Sbjct: 1 MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ +A +F M + + P + T+ +LI GLC R EA + +MM + N+ P+ F+
Sbjct: 61 VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL-NIMPNIVTFS 119
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
LI C G + A G + M +E
Sbjct: 120 LLINIFCKEGNVFEARGVLKTMTEMGVE 147
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I+ Y +A+ + A Q+F+EM + + S+NTL++ + G++ DL
Sbjct: 183 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL 242
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M + PD C+Y+IL+ G L A+++F M L+P +V + LI +C
Sbjct: 243 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 302
Query: 204 ELRVDEALKLKEDMMRVYNVKPD 226
+ EA KL ++ V ++P+
Sbjct: 303 SRNLKEARKLFSELF-VQGLQPN 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + R + AL +F M + + + ++N+L+ + + + +
Sbjct: 43 PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++M + P+ ++++L++ + +A V M + ++P +VT+ +L+ G L
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V EA KL D+M KPD + LI G C + A EM+ + D
Sbjct: 163 QAEVFEARKL-FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD 219
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I +AK E +Q+ +++ H + P+ + + +I + L A +
Sbjct: 184 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQG-LTPDIVSYNTLIDGLCQLGRLREAHDL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F M + + +++ LL+ G + + LF+ M+ Y+ P+ YNIL+
Sbjct: 243 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 302
Query: 169 SRRLEDAWKVFDEMLKRRLQPTL 191
SR L++A K+F E+ + LQP +
Sbjct: 303 SRNLKEARKLFSELFVQGLQPNM 325
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++ A +FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 316
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 366
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D + ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDGANGLFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + ++ C G++ +EM R+
Sbjct: 381 V-GLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRD 416
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV I Q++ + P+ + + +I YG+AR E A VF+EM ++ T KS+N
Sbjct: 297 YKEVSSIYDQMQR-AGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYN 355
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G ++ +F+ M ++ V PD CSY ++ V + ++ A K F + +
Sbjct: 356 ILLDAFAISGLVEEAQTVFKTMRRHRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKED 415
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
L+P +V +GTL+ G V++ +++ E MR+ V+P+ +F +++
Sbjct: 416 GLRPNVVVYGTLMKGYSKLDNVEKVMRVYE-RMRMQGVEPNQTIFTTIM 463
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 100/227 (44%), Gaps = 40/227 (17%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD------------------------ 80
K +R ++ ++ GRAK + + + + H+++
Sbjct: 170 KGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSGPEPSPITYQIILKSLVEGDKYKE 229
Query: 81 -------------TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
T P++ +F +I Y ++ A ++F +MS + ++ +FN+
Sbjct: 230 AEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNS 289
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L++ ++ + D Q+ + PD SY++L+ +RR E+A VF+EML +
Sbjct: 290 LMSFEGDYKEVSSIYD--QMQRAGLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGI 347
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+PT ++ L+ + V+EA + + M R + V+PD + +++
Sbjct: 348 RPTRKSYNILLDAFAISGLVEEAQTVFKTMRR-HRVEPDLCSYTTML 393
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEH 105
+ ++ + + +++T G+ F +++L + K R P I ++ YGRA+
Sbjct: 137 WDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKGYR--PTVISQTALMEAYGRAKQYRK 194
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEK--YVSPDACSYNI 161
A VF M + + + ++ +L +++ K +F+ + EK + PD +++
Sbjct: 195 AEAVFHRMQTSGPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHM 254
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ S A K+F +M +R + + VTF +L + E E + + M R
Sbjct: 255 MIYMYKKSGDYAQARKLFAQMSERGIPQSTVTFNSL---MSFEGDYKEVSSIYDQMQRA- 310
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD ++ LIK A EEM+ I
Sbjct: 311 GLKPDVVSYSLLIKAYGKARREEEASAVFEEMLDAGI 347
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + L +A D ++ + +L+ + VVP+ + + +I+ + RA + +L++ ++M
Sbjct: 267 YPGYLDALCKAGYLDRARKSVEELRQ-SGVVPDVVTYSMLINTFARAGQFDASLELLEDM 325
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRL 172
V+ V +++TL+N + K L ++ME SP + +YN +M G S ++
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ +V++ MLK R P +VT+ ++ GL +D A+KL E +++ PDA ++
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFE-LIKSSREGPDAAAYSM 444
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+I LC G+L A G M
Sbjct: 445 VITSLCRAGKLEEACGMYHGM 465
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+ TKL R F EV + L L VV E + V+ A + AL++ E+
Sbjct: 22 FTLLATKLFRRSKFSEVVR-LFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL 80
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVS 169
S TV +N ++ + + R+ D ++++EK V P+ +Y IL++G S
Sbjct: 81 SGVYTP-TVFIYNGIITGLC---RASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS 136
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ + A +VF EM + +P +T+GTLI L +DEAL++ + R + D
Sbjct: 137 NKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE-QRSLELPTDVIT 195
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+++ GLC L AL F EEM
Sbjct: 196 CTTIVGGLCKASRLDDALKFMEEM 219
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
Y Y L++ L A M ++ +++ +L P I+ +I+ RA + A +
Sbjct: 52 YGETTYKLVVDGLCGAGMANQALELVRELSG--VYTPTVFIYNGIITGLCRASRVMDAYK 109
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
V ++M ++ V ++ LLN + K ++FQ M++ P+ +Y L+
Sbjct: 110 VLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLS 169
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +++A +V E L ++T T++ GLC R+D+ALK E+ MR V+P+
Sbjct: 170 RAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE-MRQMGVRPNE 228
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
+++L+ G GEL + F EE
Sbjct: 229 VTYSNLVHGFRQHGELDRVIRFFEE 253
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 17/230 (7%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L L R K KLA ++F+ N KP N + Y +I L RA DE
Sbjct: 130 LNGLCRSNK-TKLAREVFQEMKRNG-------CKP---NPITYGTLIQHLSRAGEIDEAL 178
Query: 72 QILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+++ ++ + +P ++I C ++ +A L+ AL+ +EM V+ +++ L++
Sbjct: 179 RVM--IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVH 236
Query: 131 AMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
G++DR+ F+ K S +A +Y + + L+ A K +E+ + +
Sbjct: 237 GFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVV 296
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
P +VT+ LI + D +L+L EDM R VKPD +++LI LC
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRR-NGVKPDVVTYSTLINVLC 345
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +++ L R+ +++ ++K + P I + +I RA ++ AL+V
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNG-CKPNPITYGTLIQHLSRAGEIDEALRV 180
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHG 165
E S + V + T++ + K R+ D + ME+ V P+ +Y+ L+HG
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLC---KASRLDDALKFMEEMRQMGVRPNEVTYSNLVHG 237
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
L+ + F+E R+ + + LC +D A K E++ R V
Sbjct: 238 FRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEEL-RQSGVV 296
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD ++ LI G+ +L E+M RN ++ D
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD 333
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
++F L + K + LF ++ + V +Y +++ G + A ++ E
Sbjct: 20 QAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRE 79
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
L PT+ + +I GLC RV +A K+ E M+ ++ P+ + L+ GLC
Sbjct: 80 -LSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVE-ESIVPNVFTYTILLNGLCRSN 137
Query: 242 ELSLALGFKEEMVRN 256
+ LA +EM RN
Sbjct: 138 KTKLAREVFQEMKRN 152
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 5/209 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVF 110
L +DL++ K +E + + +K + VP I CN ++S + + + A ++
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIK-EKGFVPN-IETCNQMLSLFLKLNRTQMAWVLY 204
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
EM N++ ++ +FN ++N + GK+ + + ME V P+ +YN ++HG +
Sbjct: 205 AEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ + A +F M + L+P T+ + I GLC E R++EA L M+ + P+A
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG-GLVPNAVT 323
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G C G+L A +++EM+ I
Sbjct: 324 YNALIDGYCNKGDLDKAYAYRDEMISKGI 352
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 107/206 (51%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L + +E ++ ++ + +VP + + +I Y L+ A DEM
Sbjct: 289 YNSFISGLCKEGRLEEASGLICKML-EGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEM 347
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
S + ++ ++N ++A+ G++ ++ + M EK + PDA ++NIL++G
Sbjct: 348 ISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDA 407
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ + DEM+ + +QPTLVT+ +LIY L R+ EA L + + + PD VF +
Sbjct: 408 KRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQ-EGLLPDIIVFNA 466
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G CA G + A +EM K+
Sbjct: 467 LIDGHCANGNIDRAFQLLKEMDNMKV 492
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + L+ Y +I LG+ E + +++ + ++P+ I+F +I + ++
Sbjct: 420 KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEG-LLPDIIVFNALIDGHCANGNID 478
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A Q+ EM + V ++NTL+ GK++ L M++ + PD SYN L+
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++DA++V DEM+ PT++T+ LI GLC + A +L ++M+ +
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVS-KGI 597
Query: 224 KPDAQVFASLIKGLCAVGEL 243
PD + S+I+ + V +L
Sbjct: 598 TPDDSTYLSIIEAMETVDDL 617
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + + ++I G+ ++ A +F ++ + + FN L++ G IDR
Sbjct: 422 IQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAF 481
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L + M+ V PD +YN LM G ++E+A ++ DEM +R ++P +++ TLI G
Sbjct: 482 QLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGY 541
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +A +++++MM P + +LI+GLC E A +EMV I D
Sbjct: 542 SKRGDMKDAFRVRDEMMTT-GFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPD 600
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 111/209 (53%), Gaps = 9/209 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+L I L + ++ +++ + ++P+ + +I+ Y R + A +
Sbjct: 355 SLVTYNLFIHALFMEGRMGDADNMIKEMR-EKGMMPDAVTHNILINGYCRCGDAKRAFGL 413
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD---LF-QIMEKYVSPDACSYNILMHG 165
DEM +Q T+ ++ +L+ + GK +RM + LF +I ++ + PD +N L+ G
Sbjct: 414 LDEMVGKGIQPTLVTYTSLIYVL---GKRNRMKEADALFSKIQQEGLLPDIIVFNALIDG 470
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ ++ A+++ EM ++ P +T+ TL+ G C E +V+EA +L ++M R +KP
Sbjct: 471 HCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKR-RGIKP 529
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D + +LI G G++ A ++EM+
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMM 558
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 18/232 (7%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87
L++ P+P P+ NL+ ++ +FDE+ L D
Sbjct: 103 LYRLPSPKPS-----------INLIQRLILSPTCTNRTIFDELA-----LARDRVDAKTT 146
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+IF ++ Y + AL+ F + +++ N +L+ L + L+
Sbjct: 147 LIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAE 206
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M + + ++NI+++ +L+ A + M ++P +VT+ T+I+G CL +
Sbjct: 207 MFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGK 266
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
A ++ M+ ++PD + S I GLC G L A G +M+ +
Sbjct: 267 FQRA-RVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGL 317
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + M E ++L VP+++ +C++I+ +E AL++F+E
Sbjct: 296 YNTIIDGYCKISMVQEATELLKDAVFKG-FVPDQVTYCSLINGLCAEGDVERALELFNEA 354
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N+L+ + G I + + ++ E+ PD +YNI+++G +
Sbjct: 355 QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNI 414
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA V ++ + + P + TF TLI G C L++D AL+L E M Y + PD + S
Sbjct: 415 SDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE-YGIAPDTITYNS 473
Query: 233 LIKGLCAVGELS 244
++ GLC G+++
Sbjct: 474 VLNGLCKAGKVN 485
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+ F +I Y + L+ ALQ+ + M + + ++N++LN + GK++ + +
Sbjct: 430 LPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNE 489
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
FQ ++ K P+ +YNIL+ S ++E+A KV +M + L P V+F TLIYG C
Sbjct: 490 TFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFC 549
Query: 203 LELRVDEALKLKEDM-MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ A L + + + Y+ D F +LI + +A +EM+ D
Sbjct: 550 RNGDLEGAYLLFQKLEEKGYSATAD--TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRAD 607
Query: 262 A 262
+
Sbjct: 608 S 608
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDA 156
A L A+++ D M ++ V V ++NTL+ + C K + M L ++M + PD
Sbjct: 237 AGRLPEAVRLVDGMRAYAVPDVV-TYNTLIRGL--CKKSMPQEAMHYLRRMMNQGCLPDD 293
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN ++ G +++A ++ + + + P VT+ +LI GLC E V+ AL+L +
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 353
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +KPD V+ SL+KGLC G + AL EM D
Sbjct: 354 A-QAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 397
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 13/229 (5%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D + AL+LF N +A+ +KP +++ Y+ ++ L + Q+++++
Sbjct: 341 EGDVERALELF-------NEAQAKGIKP---DIVVYNSLVKGLCLQGLILHALQVMNEMA 390
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ P+ + VI+ + + A V ++ V +FNTL++ K+
Sbjct: 391 EEG-CHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKL 449
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D L + M +Y ++PD +YN +++G + ++ + + F EM+ + P +T+ L
Sbjct: 450 DSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNIL 509
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
I C +++EA K+ M + + PDA F +LI G C G+L A
Sbjct: 510 IENFCRSNKMEEASKVIVKMSQ-EGLHPDAVSFNTLIYGFCRNGDLEGA 557
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHAL---QV 109
Y ++ L + +Q+ Q+ H T V P F V+ + R +LE L +V
Sbjct: 157 YCTVVCGLYAHGHTHDARQLFDQMLH-THVFPNLAAFNKVLHALCKRGDVLEAGLLLGKV 215
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
S N+ ++N + + G++ L M Y PD +YN L+ G
Sbjct: 216 IQRGMSINL----FTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKK 271
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++A M+ + P T+ T+I G C V EA +L +D + PD
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAV-FKGFVPDQVT 330
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI GLCA G++ AL E I+ D
Sbjct: 331 YCSLINGLCAEGDVERALELFNEAQAKGIKPD 362
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LK N + Y+++I R+ +E +++ ++ + + P+ + F +I + R L
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEG-LHPDAVSFNTLIYGFCRNGDL 554
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
E A +F ++ T +FNTL+ A + +F +++ K D+ +Y +L
Sbjct: 555 EGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVL 614
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + ++ A+ EM+K+ P++ TFG +I L + RV +A+ + M+++
Sbjct: 615 IDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKI 672
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ A G++ D F+ M+ + P A +YN +M V + + A KV+ ML +
Sbjct: 60 IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P L T + CL R AL+L + A + +++ GL A G A
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPH-----RGAVAYCTVVCGLYAHGHTHDAR 174
Query: 248 GFKEEMVRNKI 258
++M+ +
Sbjct: 175 QLFDQMLHTHV 185
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 109/214 (50%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +++ F ++ + H + D +V +IS + + +++ A+ V
Sbjct: 371 DIVSYSILLHGYATEGRFADMNNLFHSMA-DKGIVSNCHCINILISAHAKRGMMDEAMLV 429
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
F EM V+ V +++TL++A G++ D M Q++ + P+ Y+ L+HG +
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489
Query: 169 SRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L A + EM+ + L +P +V F ++I+ LC+E RV +A + ++ + + +P
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGD-RPTI 548
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLI G C VG++ A G + MV IE D
Sbjct: 549 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 582
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 106/207 (51%), Gaps = 4/207 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+++I+ + M DE + +++ V P + + +IS + R L A++ F +M
Sbjct: 411 NILISAHAKRGMMDEAMLVFTEMQGQG-VRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVS-PDACSYNILMHGCVVSRRL 172
S ++ +++L++ G + + + ++M K + P+ ++ ++H + R+
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA VF+ ++ +PT+VTF +LI G CL ++++A + + M+ V ++PD +
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV-GIEPDVVTNNT 588
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
L+ G C G++ L EM+ K++
Sbjct: 589 LVSGYCKSGKIDDGLILFREMLHKKVK 615
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+ + Y+ +I L G ++ + + + K R P+ + F VI + + + A
Sbjct: 194 DAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 253
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILMHGCV 167
+F+EM V V ++N++++A+ +D+ L Q+++K V PD +YN ++HG
Sbjct: 254 LFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYS 313
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +++ K+F +M + L P VTF + + LC R +A ++ + M PD
Sbjct: 314 CSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQ-YMTTKGHMPDI 372
Query: 228 QVFASLIKGLCAVGELS 244
++ L+ G G +
Sbjct: 373 VSYSILLHGYATEGRFA 389
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 3/191 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ + II L + Q + + + H P + F ++I Y +E A
Sbjct: 510 RPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIH-IGDRPTIVTFNSLIDGYCLVGKMEKAF 568
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
V D M S ++ V + NTL++ GKID LF +++ K V P +YNI++ G
Sbjct: 569 GVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGL 628
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + R A K+F EM+ + T+ L+ GLC DEA+ L + + K D
Sbjct: 629 LRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHK-LGAMDCKFD 687
Query: 227 AQVFASLIKGL 237
+ ++I L
Sbjct: 688 ITILNTMINAL 698
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+ Q ++P N++ Y +I+ R + + Q+ + P ++ ++I +
Sbjct: 434 QGQGVRP---NVVTYSTLISAFCRMGRLADAMEKFSQMI-SIGIEPNTAVYHSLIHGFCM 489
Query: 100 ARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDAC 157
L A + EM S + R + F+++++++ G++ D+F ++ P
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIV 549
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++N L+ G + ++E A+ V D M+ ++P +VT TL+ G C ++D+ L L +M
Sbjct: 550 TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREM 609
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ VKP + ++ GL G S A EM+ + +D
Sbjct: 610 LH-KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRA 100
+P ++L+H + L +AK F + +++ + H P + F ++I S
Sbjct: 474 EPNTAVYHSLIHGFCMHGDLVKAKEF--ISEMMSKGLHR----PNIVFFSSIIHSLCIEG 527
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDA 156
R+++ A VF+ + + T+ +FN+L++ GK+++ F +++ VS PD
Sbjct: 528 RVMD-AQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA---FGVLDAMVSVGIEPDV 583
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ N L+ G S +++D +F EML ++++PT VT+ ++ GL R A K+ +
Sbjct: 584 VTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHE 643
Query: 217 MMRVYNVKPDAQVFASLIKGLC 238
M+ D + L+KGLC
Sbjct: 644 MID-SGTAVDIDTYKILLKGLC 664
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDAC 157
ARLL L+ + +Q T T L + + D D L ++ E PDA
Sbjct: 148 ARLLRAGLK------TGTIQAT-----TFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAI 196
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
SYN ++ R ++A + M K R P +V+F T+I+G + V +A L
Sbjct: 197 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFN 256
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+M++ V PD + S++ LC + A +MV +E D
Sbjct: 257 EMVQ-KGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDG 302
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y ILM C +RR + +L+ L+ + T + LC R DEA+ +
Sbjct: 126 TYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHR 185
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
M + PDA + ++IK LC AL + M +
Sbjct: 186 MSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAK 223
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + + Y++++ L RA +++ H++ D+ + + ++ R L +
Sbjct: 612 KKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMI-DSGTAVDIDTYKILLKGLCRNDLTD 670
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ +F ++ + + + + NT++NA+ + + DLF I + P+ +Y +++
Sbjct: 671 EAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMI 730
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +E+A +F M K P+
Sbjct: 731 RNLLKEGSVEEADTMFSSMEKSGCAPS 757
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +I+ +I + +E A +F EM F + ++ L++ + G + ++
Sbjct: 196 PNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M E V P+ +YN +M+ R +DA+K+FDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E++ +EA K+ D M+ + P+ + +LI G C VG+L AL
Sbjct: 316 EMKANEANKVM-DQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 110/246 (44%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L R +E +++ Q+K D + P I + +I + L AL +
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSDG-INPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAML--------------------------------TCGK 137
++ S + ++ ++N L++ T +
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFAR 420
Query: 138 IDRMTDLFQI---MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+D M Q+ ME+ ++PD +Y++L+HG + ++ +A ++F M+ ++L+P V
Sbjct: 421 MDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVI 480
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T++ G C E AL+L +M + P+ + +I+ LC + A G E+M
Sbjct: 481 YNTMVLGYCKEGSSYRALRLFREMEE-KELPPNVASYRYMIEVLCKERKSKEAEGLVEKM 539
Query: 254 VRNKIE 259
+ I+
Sbjct: 540 IDTGID 545
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 104/247 (42%), Gaps = 40/247 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y ++I L + + + ++ +++ D V P + V++ + + + A ++
Sbjct: 232 NEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDG-VFPNLYTYNCVMNQHCKDGRTKDAFKL 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAM---LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
FDEM V + ++NTL+ + + + +++ D Q+ ++P+ +YN L+ G
Sbjct: 291 FDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMD--QMKSDGINPNLITYNTLIDGF 348
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------- 217
+L A + ++ R L P+LVT+ L+ G C + A K+ ++M
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408
Query: 218 -------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
M + PD ++ LI G C G+++ A +
Sbjct: 409 ITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKL 468
Query: 253 MVRNKIE 259
MV K+E
Sbjct: 469 MVAKKLE 475
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F +LH + + ++ +I+ Y +++ L+ ++ F+EM FN
Sbjct: 74 FFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFN 133
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LL ++ ++ F + V D S+ I++ GC + +E ++ + E+ +
Sbjct: 134 NLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG 193
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
P +V + TLI G C +++A L +M + + + + + LI GL
Sbjct: 194 FSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGK-FGLVANEWTYTVLIHGL 243
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ ++NA + +D F ++++K P + +N L+ V S W+ F+E
Sbjct: 97 YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNES- 155
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K ++ + +FG +I G C ++++ L ++ R + P+ ++ +LI G C GE+
Sbjct: 156 KIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVEL-REFGFSPNVVIYTTLIDGCCKRGEI 214
Query: 244 SLA 246
A
Sbjct: 215 EKA 217
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ + + +V+ +L +K + +VP + + N++ Y + L+ A Q+ + M
Sbjct: 243 YNTILKAMSKKGRLSDVKDLLLDMKRNG-LVPNRVTYNNLVYGYCKLGSLKEAFQIVELM 301
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
N+ + ++N L+N + G I +L +M+ + PD +YN L+ GC
Sbjct: 302 KQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLS 361
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K+ ++M ++P VT + LC E + +E + ++++ ++ PD + +
Sbjct: 362 LEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHT 421
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LIK VG+LS AL EM + I+M+
Sbjct: 422 LIKAYLKVGDLSGALEMMREMGQKGIKMNT 451
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + + I+ L + + DE +L H + +E+ + +I Y R +E
Sbjct: 445 KGIKMNTITLNTILDALCKERKVDEAHNLLDS-AHKRGYIVDEVTYGTLIMGYFREEKVE 503
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A +++DEM + TV +FN+L+ + GK + + F ++ E + PD C++N ++
Sbjct: 504 KAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSII 563
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+E A++ ++E +K +P T L+ GLC E ++AL ++ V
Sbjct: 564 LGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREV 623
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + ++I C +L A EM ++E D
Sbjct: 624 --DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPD 659
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 7/224 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +KP N + +++ + L + + +EV + + +L P+ + + +I Y +
Sbjct: 372 ENDGVKP---NQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLK 428
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDAC 157
L AL++ EM ++ + NT+L+A+ K+D +L K Y+ D
Sbjct: 429 VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIV-DEV 487
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y L+ G ++E A++++DEM + ++ PT+ TF +LI GLC + + A++ K D
Sbjct: 488 TYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAME-KFDE 546
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + PD F S+I G C G + A F E +++ + D
Sbjct: 547 LAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPD 590
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query: 88 IIFCNVISF----YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
++ CN + Y + + A +VFD+M V VK+FN L+N GK++
Sbjct: 166 LLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALG 225
Query: 144 LFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M E V+PD +YN ++ RL D + +M + L P VT+ L+YG
Sbjct: 226 MLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGY 285
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C + EA ++ E +M+ N+ PD + LI G+C G + L + M K++ D
Sbjct: 286 CKLGSLKEAFQIVE-LMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPD 344
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV---VSRRLEDAWKVFD 180
F+ L+A L GK +FQ M + + P+ + N L+ G V S + A +VFD
Sbjct: 134 FDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFD 193
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M+K + + TF L+ G CLE ++++AL + E M+ +NV PD + +++K +
Sbjct: 194 DMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKK 253
Query: 241 GELSLALGFKEEMVRNKI 258
G LS +M RN +
Sbjct: 254 GRLSDVKDLLLDMKRNGL 271
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 69/134 (51%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
++ ++P++ F ++I Y + +E A + ++E + + + N LLN + G +
Sbjct: 549 ESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTE 608
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ + F + D +YN ++ ++L++A+ + EM ++RL+P T+ ++I
Sbjct: 609 KALNFFNTLITEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIIT 668
Query: 200 GLCLELRVDEALKL 213
L + ++ EA +L
Sbjct: 669 SLMEDGKLSEADEL 682
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC---LELRVDEA 210
P ++I + + + + A +VF +M++ +L+P L+T TL+ GL + A
Sbjct: 129 PSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASA 188
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++ +DM+++ V D + F L+ G C G+L ALG E MV
Sbjct: 189 REVFDDMVKI-GVSLDVKTFNVLVNGYCLEGKLEDALGMLERMV 231
>gi|414869157|tpg|DAA47714.1| TPA: hypothetical protein ZEAMMB73_516901 [Zea mays]
Length = 853
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 12/248 (4%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
F+ +L+L D +AL F+ P F+++ Y +I LG+A+ F
Sbjct: 328 FQANQVLKLLHDHTVALGFFQWLKRQPG---------FKHDGHTYTTMIGILGQARQFGV 378
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++++L ++ P + + +I YGRA L+ A++VF+EM + ++ TL+
Sbjct: 379 LKELLDEMSR-AHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLI 437
Query: 130 NAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G +D DL+ M++ +SPD +Y+++++ +L A+K+F EM++
Sbjct: 438 DIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSVMVNCLGKGGQLAAAYKLFCEMIENGCT 497
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P LVT+ +I + +KL +D M+V +PD ++ +++ L G L A
Sbjct: 498 PNLVTYNIMIALQAKARNYENVVKLYKD-MQVAGFRPDKITYSIVMEVLGHCGHLDEAEA 556
Query: 249 FKEEMVRN 256
EM R+
Sbjct: 557 VFIEMRRD 564
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 88/194 (45%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ LG+ ++ ++ + P + + +I+ +AR E+ ++++ +M
Sbjct: 468 YSVMVNCLGKGGQLAAAYKLFCEMI-ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ +++ ++ + CG +D +F M + +PD Y +L+ + ++
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 586
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + ML+ LQP + T +L+ R +A + ++M+ + P Q + +L
Sbjct: 587 KALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNML-ARGLVPSVQTY-TL 644
Query: 234 IKGLCAVGELSLAL 247
+ C VG+ + L
Sbjct: 645 LLSCCTVGQAQMGL 658
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 106/201 (52%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y + L +A D ++ + +L+ + VVP+ + + +I+ + RA + +L++ ++M
Sbjct: 267 YPGYLDALCKAGYLDRARKSVEELRQ-SGVVPDVVTYSMLINTFARAGQFDASLELLEDM 325
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRL 172
V+ V +++TL+N + K L ++ME SP + +YN +M G S ++
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ +V++ MLK R P +VT+ ++ GL +D A+KL E +++ PDA ++
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFE-LIKSSREGPDAAAYSM 444
Query: 233 LIKGLCAVGELSLALGFKEEM 253
+I LC G+L A G M
Sbjct: 445 VITSLCRAGKLEEACGMYHGM 465
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 10/204 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+ TKL R F EV + L L VV E + V+ A + AL++ E+
Sbjct: 22 FTLLATKLFRRSKFSEVVR-LFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVREL 80
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVS 169
S T+ +N ++ + + R+ D ++++EK V P+ +Y IL++G S
Sbjct: 81 SGVYTP-TLFIYNGIITGLC---RASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRS 136
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ + A +VF EM + +P +T+GTLI L +DEAL++ + R + D
Sbjct: 137 NKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIE-QRSLELPTDVIT 195
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+++ GLC L AL F EEM
Sbjct: 196 CTTIVGGLCKASRLDDALKFMEEM 219
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 4/205 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
Y Y L++ L A M ++ +++ +L P I+ +I+ RA + A +
Sbjct: 52 YGETTYKLVVDGLCGAGMANQALELVRELSG--VYTPTLFIYNGIITGLCRASRVMDAYK 109
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCV 167
V ++M ++ V ++ LLN + K ++FQ M++ P+ +Y L+
Sbjct: 110 VLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLS 169
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ +++A +V E L ++T T++ GLC R+D+ALK E+ MR V+P+
Sbjct: 170 RAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEE-MRQMGVRPNE 228
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
+++L+ G GEL + F EE
Sbjct: 229 VTYSNLVHGFRQHGELDRVIRFFEE 253
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 17/230 (7%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L L R K KLA ++F+ N KP N + Y +I L RA DE
Sbjct: 130 LNGLCRSNK-TKLAREVFQEMKRNG-------CKP---NPITYGTLIQHLSRAGEIDEAL 178
Query: 72 QILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+++ ++ + +P ++I C ++ +A L+ AL+ +EM V+ +++ L++
Sbjct: 179 RVM--IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVH 236
Query: 131 AMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
G++DR+ F+ K S +A +Y + + L+ A K +E+ + +
Sbjct: 237 GFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVV 296
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
P +VT+ LI + D +L+L EDM R VKPD +++LI LC
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRR-NGVKPDVVTYSTLINVLC 345
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 10/217 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y +++ L R+ +++ ++K + P I + +I RA ++ AL+V
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNG-CKPNPITYGTLIQHLSRAGEIDEALRV 180
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHG 165
E S + V + T++ + K R+ D + ME+ V P+ +Y+ L+HG
Sbjct: 181 MIEQRSLELPTDVITCTTIVGGLC---KASRLDDALKFMEEMRQMGVRPNEVTYSNLVHG 237
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
L+ + F+E R+ + + LC +D A K E++ R V
Sbjct: 238 FRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEEL-RQSGVV 296
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD ++ LI G+ +L E+M RN ++ D
Sbjct: 297 PDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPD 333
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDA 175
V+ ++F L + K + LF ++ + V +Y +++ G + A
Sbjct: 14 GVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQA 73
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++ E L PTL + +I GLC RV +A K+ E M+ ++ P+ + L+
Sbjct: 74 LELVRE-LSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVE-ESIVPNVFTYTILLN 131
Query: 236 GLCAVGELSLALGFKEEMVRN 256
GLC + LA +EM RN
Sbjct: 132 GLCRSNKTKLAREVFQEMKRN 152
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 113/211 (53%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++ A+
Sbjct: 297 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++ G
Sbjct: 356 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 415
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + ++A ++ +EM+ + LQP ++T+ T+ GLC E R+++A++ +DM ++P
Sbjct: 416 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM----GIRP 471
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ ++I GLC E A+ M+ N
Sbjct: 472 NTVLYNAIILGLCKRRETHSAIDLFAYMIGN 502
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 106/214 (49%), Gaps = 8/214 (3%)
Query: 43 PLKPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
P++P Y Y+ +I L GR + + + + L+ R VP+ + + ++ +
Sbjct: 153 PVEPDAYT---YNTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRS 207
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
+ A+++ DEM + ++N ++N + G++D + + + Y P+ SYN
Sbjct: 208 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 267
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I++ G + R EDA ++ EM ++ P +VTF LI LC + V+ AL++ E + +
Sbjct: 268 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK- 326
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y P++ + L+ C ++ A+ F + MV
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMV 360
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V ++N ++ G++D L + E V PDA +YN L+ G R +A V DE
Sbjct: 126 VMAYNAMVAGYCGAGQLDAARRL--VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDE 183
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
ML+RR P +VT+ L+ C +A+KL D MR PD + ++ G+C G
Sbjct: 184 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL-DEMRDKGCTPDIVTYNVVVNGICQEG 242
Query: 242 ELSLALGF 249
+ A+ F
Sbjct: 243 RVDDAIEF 250
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PDA + L+ S R +A +V P ++ + ++ G C ++D A +L
Sbjct: 94 PDAGTCAALIKKLSASGRTAEARRVLAA-----CGPDVMAYNAMVAGYCGAGQLDAARRL 148
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+M V+PDA + +LI+GLC G + AL +EM+R +
Sbjct: 149 VAEM----PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR 188
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 38/185 (20%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R+ D ++LHQLK D P I + VI +A + AL++
Sbjct: 367 DIVSYNTLLTALCRSGEVDVAVELLHQLK-DKGCAPVLISYNTVIDGLTKAGKTKEALEL 425
Query: 110 FDEMSSFNVQRTVKSFNTLL----------NAMLTCGKIDRMT----------------- 142
+EM S +Q + +++T+ +A+ GK+ M
Sbjct: 426 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 485
Query: 143 --------DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLV 192
DLF M P+ +Y IL+ G +++A + DE+ R ++ +L+
Sbjct: 486 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGVVRKSLI 545
Query: 193 TFGTL 197
G +
Sbjct: 546 NKGAI 550
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 10/222 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+Q KP N L Y ++ L R D+ + ++ + ++VP+ + VI +A
Sbjct: 3 SQDCKP---NALSYCYLVKALCRTGKIDKACSTIAEMARE-KLVPDVFTYNVVIDTLCKA 58
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
R + A++ F+ M + V ++NTLL + G++ + LF ME ++P +Y
Sbjct: 59 RRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTY 114
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ + E A+ + M R+ PT+ ++ ++I GLC +VD+A +L E+M +
Sbjct: 115 TTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM-K 173
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ KPD + +LI GLC L A MV N + D
Sbjct: 174 LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPD 215
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P ++ + +I + + E A + M+S TV S+ +++N + K+D+
Sbjct: 107 ITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAY 166
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ M+ PD +YN L+HG V +RL +A + M++ QP +TF LI GL
Sbjct: 167 QLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGL 226
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C R+ EA L + M + PD L+ LC +L AL +VRN
Sbjct: 227 CTTDRIKEAFVLFQGMAK-QGCAPDLVTHTVLVSKLCIRRKLRPAL----SVVRN 276
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E L QL + P +C++I+ + R ++ A Q+F+EM + ++NTL
Sbjct: 128 ETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTL 187
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ + ++ DL +M E PD ++ L+ G + R+++A+ +F M K+
Sbjct: 188 IHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGC 247
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
P LVT L+ LC+ ++ AL + +R Y P+A + + I
Sbjct: 248 APDLVTHTVLVSKLCIRRKLRPALSV----VRNYPACPEAVILYTPI 290
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 3/167 (1%)
Query: 85 PEEII-FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
PE +I + + GR R + A ++ +M+ V V ++ + + R
Sbjct: 281 PEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYR 340
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F+ ++E+ + PD +YN+L+ G + RL+ A K+ M + L P +VT+ TL+ C
Sbjct: 341 EFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHC 400
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ +V+ +L M+ +PD +++L+ GL VG++ A F
Sbjct: 401 RKGKVEAIGELLHTMVS-RGRQPDVATWSTLVAGLFRVGQVDAAYSF 446
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G ++ L M V PD +Y++L++
Sbjct: 155 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLIN 214
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++F+EML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 215 GLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLS-QSLL 273
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G L+ A +EM ++ D
Sbjct: 274 PDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPD 310
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + D+ ++ ++ +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDDANELFEEMLVKG-LVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++V+ +M S ++ + ++NTL+ + G +++ DL M K + PD +
Sbjct: 254 NGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +KPD + +I C G++ +EM R+
Sbjct: 374 S-FGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 410
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P+ F VIS R L A V ++ ++ + +V ++N+L++ G M
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNM 245
Query: 142 TD----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
L +++E +SP A ++ +L++G + A +VF+EM ++ + ++VT+ +L
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I GLC E +V+E +KL E+M + + P+ F ++KG C G ++ A + + M
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 258 IEMD 261
+E D
Sbjct: 365 VEPD 368
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L +E +++ +++ D + P EI F V+ + + ++ A
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDW 356
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
D M+ NV+ V + L++ GK+ D M + +K +SP+ +YN L+ G
Sbjct: 357 IDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR 416
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S A + DEM ++ ++ +VT+ LI LC + V +A+KL ++M V ++P+
Sbjct: 417 SGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEV-GLEPNHL 475
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I+G C G + A + M
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRM 500
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P S N L+ G V ++R++ A K F L+RR+ P + TF T+I GLC ++ +A +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+D ++ + + P + SLI G C G
Sbjct: 214 AKD-IKAWGLAPSVATYNSLIDGYCKKG 240
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + +I+ + R+ A + DEM ++ V ++N L+ A+ G++ +
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAV 459
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M E + P+ +YN ++ G ++ A+++ M K R + +VT+ I
Sbjct: 460 KLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYF 519
Query: 202 CLELRVDEALKLKEDMM 218
C ++DEA L +M+
Sbjct: 520 CQIGKMDEANDLLNEML 536
>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 484
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 116/217 (53%), Gaps = 3/217 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F++N + II LGRA + + IL + + +E ++ +I YG +++ +
Sbjct: 41 FQHNRETHLKIIEILGRASKLNHARCILLDMPKKG-LEWDEDMWVLMIDSYGNGGIVQES 99
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+++F +M V+RT+KS++ L + G+ F +++ + + P ++NI++ G
Sbjct: 100 VKLFQKMDELGVERTIKSYDALFKVISRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWG 159
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S ++E A + F++M R + P ++T+ T+I G +++EA K + M+ N++P
Sbjct: 160 FFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKYFVE-MKGRNIEP 218
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LIKG +V ++ AL EEM I+ +A
Sbjct: 219 TVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANA 255
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 72/237 (30%)
Query: 93 VISFYGRARLLEHA-----------------------------------LQVFDEMSSFN 117
+I GRA L HA +++F +M
Sbjct: 51 IIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDELG 110
Query: 118 VQRTVKSFNTL----------------LNAMLT-------------------CGKIDRMT 142
V+RT+KS++ L N ML+ GK++
Sbjct: 111 VERTIKSYDALFKVISRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAN 170
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F+ M+ + ++PD +YN +++G +++E+A K F EM R ++PT+VT+ TLI G
Sbjct: 171 RFFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+VD+AL+L E+ M+ Y +K +A +++L+ GLC ++S A +EMV I
Sbjct: 231 VSVDQVDDALRLVEE-MKGYGIKANAITYSTLLPGLCNAEKMSEARSILKEMVDKYI 286
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + P + + +I Y ++ AL++
Sbjct: 184 DVITYNTMINGYYRVKKMEEAEKYFVEMK-GRNIEPTVVTYTTLIKGYVSVDQVDDALRL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM + ++ +++TLL + K+ + ++++KY++P D + L+ G
Sbjct: 243 VEEMKGYGIKANAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQC 302
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMRVY 221
+ L+ A V M++ + +G LI C + D+A+KL K+ ++R
Sbjct: 303 KAGNLDAAADVLKAMIRLSVPTEAGHYGVLIENYCKAGQYDQAVKLLDKLIEKDIILRPQ 362
Query: 222 N-VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ + ++ + LI LC G+ + A E +VR
Sbjct: 363 STLHMESSAYNPLIGYLCNNGQTAKA----EALVR 393
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
++R Q+ P+L + F + FR + H +L+I L + FD +IL
Sbjct: 70 VMREQRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKIL 119
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+LK+ +P F +I+ Y ++ + E A++ F +M F + V ++N++L+ M+
Sbjct: 120 EELKNSNIQIPPPT-FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQ 178
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ Q+++ +P+ ++ IL++G + + +DA K+FDEM ++ + P +
Sbjct: 179 KEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMI 238
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ ++ GLC R D+ +L + M+V PD+ +L+ G C +G++ A
Sbjct: 239 YTIILSGLCQAKRTDDVHRLL-NTMKVSGCCPDSITCNALLDGFCKLGQIDEAFAL 293
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RAK +DEVQ+ ++ + P+ +++ +I + ++++AL + ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + +N L+ G +D+ L +I + P +C+Y IL+ G + L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLL 427
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
++A ++F++M P+++TF LI GLC ++EA L
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHL 468
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 40/245 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-------FCN---------- 92
N + Y +I++ L +AK D+V ++L+ +K + P+ I FC
Sbjct: 235 NTMIYTIILSGLCQAKRTDDVHRLLNTMKV-SGCCPDSITCNALLDGFCKLGQIDEAFAL 293
Query: 93 ---------VISFYGRARLLEHALQV--FDEMSSF-------NVQRTVKSFNTLLNAMLT 134
V+ G + L++ + +DE+ + ++ V + L+
Sbjct: 294 LQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCE 353
Query: 135 CGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G +D ++ M ++ +SPD YN L+ G L+ A + E+ K PT T
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA--LGFKE 251
+ LI G+C +DEA ++ M + P F +LI GLC GEL A L +K
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENL-GCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472
Query: 252 EMVRN 256
E+ +N
Sbjct: 473 EIGKN 477
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N+ + L P Y Y+ +I + D+ + + ++ + P + +I
Sbjct: 365 NDMTQRGLSPDTY---CYNALIKGFCDVGLLDKARSLQLEISKND-CFPTSCTYTILICG 420
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD- 155
R LL+ A Q+F++M + ++ +FN L++ + G+++ LF ME +P
Sbjct: 421 MCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSL 480
Query: 156 -------ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
A +G R EDA++V D+M+K P+ + L+ C + ++
Sbjct: 481 FLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLS 540
Query: 209 EALKL 213
A L
Sbjct: 541 VAFSL 545
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 110/209 (52%), Gaps = 6/209 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A+ + P N+ Y+ +I L + E +L+++ ++P + F +I+ + +
Sbjct: 289 KAKGISP---NIFTYNSLIQGLCNFSRWREASAMLNEMM-SLNIMPNIVTFSLLINIFCK 344
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ A V M+ V+ V ++++L+N ++ LF +M K PD S
Sbjct: 345 EGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFS 404
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G ++R+ +A ++F+EM+ + L P +V++ TLI GLC R+ EA L ++M+
Sbjct: 405 YNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNML 464
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLAL 247
N+ PD ++ L+ G C G L+ A
Sbjct: 465 TNGNL-PDLCTYSILLDGFCKQGYLAKAF 492
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I+ Y +A+ + A Q+F+EM + + S+NTL++ + G++ DL
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDL 459
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M + PD C+Y+IL+ G L A+++F M L+P +V + LI +C
Sbjct: 460 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 519
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ EA KL ++ V ++P+ Q++ ++I GLC G L AL
Sbjct: 520 SRNLKEARKLFSELF-VQGLQPNVQIYTTIINGLCKEGLLDEAL 562
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + + +E I +K + P + ++I A +
Sbjct: 261 DVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG-ISPNIFTYNSLIQGLCNFSRWREASAM 319
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM S N+ + +F+ L+N G + + + M E V P+ +Y+ LM+G +
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+FD M+ + +P + ++ LI G C R+ EA +L +M+ + PD
Sbjct: 380 QAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIH-QGLTPDIV 438
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI GLC +G L A + M+ N
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTN 466
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ F +I+ + A+++FD+M + Q V ++ T++N + G+ LF+
Sbjct: 193 VTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRK 252
Query: 148 M-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M E PD +Y+ ++ RR+ +A +F M + + P + T+ +LI GLC R
Sbjct: 253 MGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSR 312
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
EA + +MM + N+ P+ F+ LI C G + A G + M +E
Sbjct: 313 WREASAMLNEMMSL-NIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVE 364
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
V ++ +Q T+ +FNTL+N + GK + +LF M + PD +Y +++
Sbjct: 176 GFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIIN 235
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G A +F +M + QP +VT+ T+I LC + RV+EAL + M+ +
Sbjct: 236 GLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFS-YMKAKGIS 294
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P+ + SLI+GLC A EM+
Sbjct: 295 PNIFTYNSLIQGLCNFSRWREASAMLNEMM 324
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 88/169 (52%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I +AK E +Q+ +++ H + P+ + + +I + L A +
Sbjct: 401 DVFSYNILINGYCKAKRIGEAKQLFNEMIHQG-LTPDIVSYNTLIDGLCQLGRLREAHDL 459
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F M + + +++ LL+ G + + LF+ M+ Y+ P+ YNIL+
Sbjct: 460 FKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCK 519
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
SR L++A K+F E+ + LQP + + T+I GLC E +DEAL+ +M
Sbjct: 520 SRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNM 568
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIME-KYVSPDACS 158
R ++ AL F+ M + + FN LL+A++ D + L + ME +SPD +
Sbjct: 100 RNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYT 159
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
++L++ +R++ + V +++K LQ T+VTF TLI GLC + +A++L +DM+
Sbjct: 160 LHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMV 219
Query: 219 -RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R Y +PD + ++I GLC +GE A G +M
Sbjct: 220 ARGY--QPDVHTYTTIINGLCKIGETVAAAGLFRKM 253
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + L+I + E + +L + + V P + + ++++ Y + A ++
Sbjct: 331 NIVTFSLLINIFCKEGNVFEARGVLKTMT-EMGVEPNVVTYSSLMNGYSLQAEVVEARKL 389
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FD M + + V S+N L+N +I LF +++ + ++PD SYN L+ G
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQ 449
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL +A +F ML P L T+ L+ G C + + +A +L M Y +KP+
Sbjct: 450 LGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY-LKPNMV 508
Query: 229 VFASLIKGLC 238
++ LI +C
Sbjct: 509 MYNILIDAMC 518
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + R + AL +F M + + + ++N+L+ + + + +
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 319
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++M + P+ ++++L++ + +A V M + ++P +VT+ +L+ G L
Sbjct: 320 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 379
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V EA KL D+M KPD + LI G C + A EM+ + D
Sbjct: 380 QAEVVEARKLF-DVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD 436
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L + T + P +++ +I ++R L+ A ++F E+ +Q V+ + T++N +
Sbjct: 494 LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLC 553
Query: 134 TCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G +D + F+ ME+ P+ SYN+++ G + + A ++ EM ++ +
Sbjct: 554 KEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVA 613
Query: 193 T 193
T
Sbjct: 614 T 614
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P+ F VIS R L A V ++ ++ + +V ++N+L++ G M
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNM 245
Query: 142 TD----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
L +++E +SP A ++ +L++G + A +VF+EM ++ + ++VT+ +L
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I GLC E +V+E +KL E+M + + P+ F ++KG C G ++ A + + M
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 258 IEMD 261
+E D
Sbjct: 365 VEPD 368
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L +E +++ +++ D + P EI F V+ + + ++ A
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDW 356
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
D M+ NV+ V +N L++ GK+ D M + +K +SP+ +YN L+ G
Sbjct: 357 IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR 416
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S A + DEM ++ ++ +VT+ LI LC + V +A+KL ++M V ++P+
Sbjct: 417 SGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEV-GLEPNHL 475
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I+G C G + A + M
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRM 500
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P S N L+ G V ++R++ A K F L+RR+ P + TF T+I GLC ++ +A +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+D ++ + + P + SLI G C G
Sbjct: 214 AKD-IKAWGLAPSVATYNSLIDGYCKKG 240
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + +I+ + R+ A + DEM ++ V ++N L+ A+ G++ +
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAV 459
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M E + P+ +YN ++ G ++ A+++ M K R + +VT+ I
Sbjct: 460 KLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYF 519
Query: 202 CLELRVDEALKLKEDMM 218
C ++DEA L +M+
Sbjct: 520 CQIGKMDEANDLLNEML 536
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 142 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 201
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++ A +FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 202 GLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 260
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPD 297
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A +FDEM + +F TL++ G++D
Sbjct: 187 SGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 246
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 247 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 306
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 307 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 347
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D + ++ +VP + F +I + +
Sbjct: 186 ASGVQPDVYT---YSVLINGLCKESKMDGANGLFDEMLVKG-LVPNGVTFTTLIDGHCKN 241
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 242 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTY 301
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 302 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 361
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + ++ C G++ +EM R+
Sbjct: 362 V-GLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRD 397
>gi|255570807|ref|XP_002526356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534315|gb|EEF36027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 415
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 111/218 (50%), Gaps = 21/218 (9%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSS- 115
KLG AKM+ E+ +++Q+ VP E ++ +I F+ AR L A+ +F M +
Sbjct: 134 KLGAAKMYQEMDDVVNQV----LAVPHIGNEALYNTIIYFFTEARKLTRAVNIFKHMRNS 189
Query: 116 --FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------QIMEKYVSPDACSYNILMH 164
+ + +++++N+L AML+ G+ + ++ Q++ + PD S N ++
Sbjct: 190 RNLDYRPSIRTYNSLFTAMLSRGRNSYINYMYMETIRCLFKQMVNDGIEPDIYSLNSMIK 249
Query: 165 GCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++S + DA ++F +M P ++ LI+GLC++ R A +L +DM + V
Sbjct: 250 GYILSNHVNDALRIFHQMGTVYNCAPNSFSYDYLIHGLCVQGRTQNARELYDDMEKKGFV 309
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ + SL+ L GE+ A+ + EM R + D
Sbjct: 310 -LSSRSYNSLVNALALNGEIEEAVNYFWEMTRKQKSPD 346
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 3/208 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N Y++I L + E Q+L Q++ +P+ I + VI+ Y + L+ L+
Sbjct: 251 WNTASYNIITHSLCQLGRVVEAHQLLLQMELRG-CIPDVISYSTVINGYCQVGELQRVLK 309
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ +EM ++ ++N ++ + GK+ + +++ + ++PD Y L+ G
Sbjct: 310 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 369
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ A+++FDEM KR++ P +T+ +I GLC RV EA KL +M+ ++PD
Sbjct: 370 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMV-CKRLEPDE 428
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255
+ +LI G C G++ A +M++
Sbjct: 429 VTYTALIDGYCKEGKMKEAFSLHNQMLQ 456
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
++ A ++ EM ++ + ++N+L+N + G ID+ L + ME PDA +Y
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM SR + A ++ +ML R LQPT+VTF L+ G C+ +++ KL + M+
Sbjct: 539 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE-K 597
Query: 222 NVKPDAQVFASLIKGLC 238
+ P+A + SLIK C
Sbjct: 598 GIMPNATTYNSLIKQYC 614
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 111/256 (43%), Gaps = 38/256 (14%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K + N Y+ +I L + E +++L ++ + + P+ +I+ +I + +
Sbjct: 312 EEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEG-IAPDGVIYTTLIDGFCK 370
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
+ A ++FDEM + ++ ++ + G++ LF M K + PD +
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC---------------- 202
Y L+ G ++++A+ + ++ML+ L P +VT+ L GLC
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490
Query: 203 ---LELRV----------------DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
LEL + D+A+KL +D M V PDA + +L+ C E+
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKD-MEVAGFHPDAVTYTTLMDAYCKSREM 549
Query: 244 SLALGFKEEMVRNKIE 259
A +M+ +++
Sbjct: 550 VRAHELLRQMLDRELQ 565
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 7/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC--NVISFYGRARLLEHAL 107
N++ Y + L + D ++LH++ R E I+ ++++ +A ++ A+
Sbjct: 462 NIVTYTALADGLCKCGEVDTANELLHEM---CRKGLELNIYTYNSLVNGLCKAGNIDQAV 518
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
++ +M ++ TL++A ++ R +L Q++++ + P ++N+LM+G
Sbjct: 519 KLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGF 578
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+S LED K+ ML++ + P T+ +LI C+ + ++ M V PD
Sbjct: 579 CMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMC-AKGVVPD 637
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ LIKG C + A +MV
Sbjct: 638 GNTYNILIKGHCKARNMKEAWFLHRDMV 665
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 112/258 (43%), Gaps = 38/258 (14%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+A + KD K+A +L ++ NPN F V+
Sbjct: 132 VAQIATASKDLKMARKLIQDFWVNPNLDVGVSFGHF----------------------VE 169
Query: 72 QILHQLK---HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
Q+++ K D RV IF V+ A +L+ A ++FD+M ++ + +V S N
Sbjct: 170 QLIYTYKDWGSDPRVFD---IFFQVLV---EAGMLDEARKLFDKMLNYGLLISVDSCNLF 223
Query: 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDAC----SYNILMHGCVVSRRLEDAWKVFDEMLK 184
++ + +D + ++ ++ C SYNI+ H R+ +A ++ +M
Sbjct: 224 ISHLSE--DLDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMEL 281
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R P ++++ T+I G C + LKL E+M ++ +KP+ + +I LC G+++
Sbjct: 282 RGCIPDVISYSTVINGYCQVGELQRVLKLIEEM-QIKGLKPNPYTYNGVILLLCKTGKVA 340
Query: 245 LALGFKEEMVRNKIEMDA 262
A EM+ I D
Sbjct: 341 EAERVLREMISEGIAPDG 358
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 45/226 (19%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N+ Y+ ++ L +A D+ +++ ++ P+ + + ++ Y ++R +
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV-AGFHPDAVTYTTLMDAYCKSREMV 550
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---------------- 148
A ++ +M +Q TV +FN L+N G ++ L + M
Sbjct: 551 RAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLI 610
Query: 149 --------------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
K V PD +YNIL+ G +R +++AW + +M+ +
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFN 670
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVKPD 226
T+ ++ LI G + EA +L E M R +YN+ D
Sbjct: 671 LTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 716
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L+I L A M + Q + Q+K +T +P+ + ++ YG++ ++ +++ EM
Sbjct: 790 YNLLIGGLLEADMIEIAQDVFLQVK-NTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM 848
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
S+ + + N +++ ++ G +D DL+ + ++ SP AC+Y L+ G S R
Sbjct: 849 SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 908
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L +A ++F+ M +P + LI G D A L + M++ V+PD + ++
Sbjct: 909 LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRPDLKTYS 967
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ LC VG + L + E+ + + D
Sbjct: 968 VLVDCLCMVGRVDEGLHYFRELKESGLNPD 997
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 1/211 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++++I+ L +A D+ + + L D P + +I ++ L A Q+
Sbjct: 856 NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL 915
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+ MS + + +N L+N G+ D LF+ M K V PD +Y++L+ +
Sbjct: 916 FEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 975
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+++ F E+ + L P +V + +I GL R++EAL L +M + + PD
Sbjct: 976 VGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLY 1035
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ SLI L G + A E+ R +E
Sbjct: 1036 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLE 1066
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 24/242 (9%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+ LLR+ + AL++F +N E+ +KP Y Y + I G++ D V
Sbjct: 407 ICGLLRVHRLDD-ALEIF-------DNMESLGVKPTAYT---YIVFIDYYGKSG--DSVS 453
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFY-----GRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ K T+ + I+ CN S Y GR R A Q+F + + ++N
Sbjct: 454 ALETFEKMKTKGIAPNIVACNA-SLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYN 509
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
++ G+ID L +++E PD N L++ + R+++AWK+F M +
Sbjct: 510 MMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 569
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+L+PT+VT+ TL+ GL ++ EA++L E M++ P+ F +L LC E++L
Sbjct: 570 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTL 628
Query: 246 AL 247
AL
Sbjct: 629 AL 630
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 3/215 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E K N++ + + L +A E +QI + LK D +VP+ + + ++ Y +
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK-DIGLVPDSVTYNMMMKCYSK 517
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
++ A+++ EM + V N+L+N + ++D +F M E + P +
Sbjct: 518 VGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 577
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + ++++A ++F+ M+++ P +TF TL LC V ALK+ MM
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 637
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V PD + ++I GL G++ A+ F +M
Sbjct: 638 DMGCV-PDVFTYNTIIFGLVKNGQVKEAMCFFHQM 671
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LKP N+ + + I LGRA +E +IL ++ D P+ + + +I
Sbjct: 252 ETLGLKP---NVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCT 307
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACS 158
AR L+ A +VF +M + + ++ TLL+ +D + + MEK PD +
Sbjct: 308 ARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVT 367
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ IL+ + +A+ D M + + P L T+ TLI GL R+D+AL++ ++M
Sbjct: 368 FTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME 427
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ VKP A + I G+ AL E+M
Sbjct: 428 SL-GVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 461
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL DL+ + L A + D +L + + I +I + + A +
Sbjct: 715 NLFWEDLMGSILAEAGI-DNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARML 773
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
F++ + VQ + ++N L+ +L I+ D+F Q+ PD +YN L+
Sbjct: 774 FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYG 833
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S ++++ ++++ EM +P +T +I GL VD+AL L D+M + P A
Sbjct: 834 KSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 893
Query: 228 QVFASLIKGLCAVGEL 243
+ LI GL G L
Sbjct: 894 CTYGPLIDGLSKSGRL 909
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 4/189 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++++ + DE ++L ++ + P+ I+ ++I+ +A ++ A ++F M
Sbjct: 508 YNMMMKCYSKVGEIDEAIKLLSEMVENC-CEPDVIVVNSLINTLYKADRVDEAWKMFMRM 566
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ TV ++NTLL + GKI +LF+ M +K P+ ++N L + +
Sbjct: 567 KEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 626
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A K+ +M+ P + T+ T+I+GL +V EA+ M ++ V PD +
Sbjct: 627 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL--VYPDFVTLCT 684
Query: 233 LIKGLCAVG 241
L+ G+ G
Sbjct: 685 LLPGVVKAG 693
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 6/218 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
KP R + Y ++ + + D V Q +++ D V P+ + F ++ +A
Sbjct: 327 KPDR---VTYITLLDRFSDNRDLDSVNQFWSEMEKDGHV-PDVVTFTILVDALCKAGNFG 382
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A D M + + ++NTL+ +L ++D ++F ME V P A +Y + +
Sbjct: 383 EAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFI 442
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
S A + F++M + + P +V +Y L R EA ++ + + +
Sbjct: 443 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GL 501
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD+ + ++K VGE+ A+ EMV N E D
Sbjct: 502 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPD 539
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N Y+++I G+A D + ++ + V P+ + ++ ++ L
Sbjct: 925 RPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVDCLCMVGRVDEGL 983
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD---LFQIMEKY--VSPDACSYNIL 162
F E+ + V +N ++N + GK R+ + LF M+K ++PD +YN L
Sbjct: 984 HYFRELKESGLNPDVVCYNLIINGL---GKFHRLEEALVLFNEMKKSRGITPDLYTYNSL 1040
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ ++ +E+A K+++E+ + L+P + TF LI G L + + A + + M+
Sbjct: 1041 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1096
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
+E VFD M ++R ++ T+ + G + + + M ++ +A SYN
Sbjct: 136 IEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNG 195
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+H + SR +A +V+ M+ +P+L T+ +L+ GL ++ + L ++ M
Sbjct: 196 LIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKE-METL 254
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+KP+ F I+ L G+++ A
Sbjct: 255 GLKPNVYTFTICIRVLGRAGKINEA 279
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP ++ Y+ ++ LG+ E ++ + P I F + + +
Sbjct: 571 LKP---TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDEV 626
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
AL++ +M V ++NT++ ++ G++ F M+K V PD + L+
Sbjct: 627 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL 686
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKE 215
G V + +EDA+K+ L QP + + L+ + E +D A+ E
Sbjct: 687 PGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSE 739
>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
Length = 213
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ R +P+ + ++I + ++ A + D M S + + ++N+L+ + GK+
Sbjct: 2 NKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLS 61
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
R +LF ++ K +SP+ +YN L+ + +A+K+ +M++ +QPT++T+ LI
Sbjct: 62 RAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILI 121
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
YGLC + ++EA+KL + M+ NV P+ + +LI G G + +EM
Sbjct: 122 YGLCTQGYMEEAIKLLDQMIEN-NVDPNYITYCTLIHGYIKSGNMEEISKLYDEM 175
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++++L++ G ID L +M ++P+ +YN L++G S +L A +F+++
Sbjct: 11 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 70
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ + P +T+ TLI C E + EA KLK+ M+ ++P ++ LI GLC G
Sbjct: 71 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE-GIQPTVITYSILIYGLCTQGY 129
Query: 243 LSLALGFKEEMVRNKIE 259
+ A+ ++M+ N ++
Sbjct: 130 MEEAIKLLDQMIENNVD 146
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L ++ + ++L+ + P I + +I Y + A ++
Sbjct: 43 NIITYNSLIYGLCKSGKLSRAVNLFNKLQ-SKGISPNGITYNTLIDEYCKEGKTTEAFKL 101
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M +Q TV +++ L+ + T G ++ L Q++E V P+ +Y L+HG +
Sbjct: 102 KQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIK 161
Query: 169 SRRLEDAWKVFDEMLKRRLQPT 190
S +E+ K++DEM R L PT
Sbjct: 162 SGNMEEISKLYDEMHIRGLLPT 183
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 109/207 (52%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I + + D+ + +++ + P + + VI ++ ++ A+ F++M
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHG-LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + + +L++ + TC K D+ +L +++++ + + +N ++ R+
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ K+FD M++ ++P ++T+ TLI G CL ++DEA KL M+ V VKPD + +
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV-GVKPDIVTYGT 556
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
LI G C V + AL +EMV + +
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVS 583
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L ++ D+ Q+ D + P I++ ++I + A ++
Sbjct: 410 NVVCYGTVIDVLCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDKAEEL 468
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + FN+++++ G++ LF +M + V PD +YN L+ GC +
Sbjct: 469 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 528
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A K+ M+ ++P +VT+GTLI G C R+D+AL L ++M+ V P+
Sbjct: 529 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS-SGVSPNII 587
Query: 229 VFASLIKGL 237
+ +++GL
Sbjct: 588 TYNIILQGL 596
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ +F +I Y + ++ A+ VF +M + V + T+++ + G +D
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F Q++++ ++P+ Y L+HG + + A ++ EML R + + F ++I
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH 491
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C E RV E+ KL + M+R+ VKPD + +LI G C G++ A MV ++ D
Sbjct: 492 CKEGRVIESEKLFDLMVRI-GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ I+ + E L +++ D V P + + +++++ + A ++
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M+ ++ + ++ TLL T G + M L +M + PD +NIL+
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAK 388
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A VF +M + L P +V +GT+I LC VD+A+ E M+ + P+
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID-EGLTPNII 447
Query: 229 VFASLIKGLC 238
V+ SLI GLC
Sbjct: 448 VYTSLIHGLC 457
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 97/186 (52%), Gaps = 3/186 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ + D+ H++ D ++P+ + + ++I+ +A+ ++ A++V
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEML-DRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ M V ++N++L+ + G+ + + L ++ V P+ +Y+ LM+
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +A K+FD M KR L+P + T+ TL+ G + + E L + M+R ++PD
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR-NGIQPDHH 377
Query: 229 VFASLI 234
VF LI
Sbjct: 378 VFNILI 383
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMH 164
V M+ V S+N LL + + +L +M PD SYN +++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + A+ + EML R + P +VT+ ++I LC +D+A+++ M++ V
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVM 268
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD + S++ G C+ G+ A+G ++M + +E
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVE 303
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ I + +I A ++ A ++ M S V+ + ++ TL+N ++D
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++ VSP+ +YNI++ G +RR A +++ + K Q L T+ +++GL
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C DEAL++ +++ + +++ + + F +I L G + A
Sbjct: 632 CKNNLTDEALRMFQNLC-LTDLQLETRTFNIMIGALLKCGRMDEA 675
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K FR + + + ++ L K + I+ + + +P+ + N++ +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180
Query: 105 HALQVFDEMSSFNVQRT---VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
AL++ M+ + V S+NT+LN G D+ + +++++ + PD +Y+
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYS 240
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMR 219
++ ++ ++ A +V + M+K + P +T+ ++++G C + EA+ LK+ MR
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKK--MR 298
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ ++SL+ LC G + A + M + +E D
Sbjct: 299 SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 9/198 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I A DE ++L + V P+ + + +I+ Y R ++ AL +
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDALAL 573
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EM S V + ++N +L + + +L+ I + + +YNI++HG
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK---P 225
+ ++A ++F + LQ TF +I L R+DEA +D+ ++ P
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEA----KDLFAAHSANGLVP 689
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ + + L G L
Sbjct: 690 DVRTYSLMAENLIEQGSL 707
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAML---TCGKIDRMTDLFQIMEKYVSPDACSYN 160
E A VFDE+ ++ N L + + R + + V+P +Y
Sbjct: 37 EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ C + RL+ + ++K+ + +TF L+ GLC + R +A+ + M
Sbjct: 97 ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156
Query: 221 YNVKPDAQVFASLIKGLC 238
PD + +L+KGLC
Sbjct: 157 LGCIPDVFSYNNLLKGLC 174
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYG--RARLLEHA 106
N++ Y++I+ L + +++ + K T++ E+ N+I +G + L + A
Sbjct: 585 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL---ELSTYNII-LHGLCKNNLTDEA 640
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L++F + ++Q ++FN ++ A+L CG++D DLF + PD +Y+++
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 700
Query: 166 CVVSRRLEDAWKVFDEM 182
+ LE+ +F M
Sbjct: 701 LIEQGSLEELDDLFLSM 717
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL +KN N N K R N++ Y+ +I L + + ++L + + ++
Sbjct: 248 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKIN 306
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + L A +++DEM ++ + ++++L+N ++D +
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++M K P+ +YN L+ G ++R+E+ ++F EM +R L VT+ TLI GL
Sbjct: 367 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 426
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D A K+ + M+ V PD ++ L+ GLC G+L AL E + ++K+E D
Sbjct: 427 AGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 483
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y ++ L + D +L +++ ++ + +I+ +I + + AL +
Sbjct: 203 DLFTYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKNVNDALNL 261
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + G+ + L M E+ ++P+ +++ L+ V
Sbjct: 262 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 321
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 322 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 380
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 381 TYNTLIKGFCKAKRVEEGMELFREM 405
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + M + + + S+N L+N ++
Sbjct: 58 SRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL 117
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD + + L++G +R+ +A + D+M QP VTF TLI+
Sbjct: 118 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 177
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + +++ GLC G++ LAL ++M + KIE
Sbjct: 178 GLFLHNKASEAVALI-DRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 236
Query: 260 MD 261
D
Sbjct: 237 AD 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK +E ++ ++ +V + + +I +A + A ++
Sbjct: 378 NVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKI 436
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK+++ +F+ ++K + PD +YNI++ G
Sbjct: 437 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 496
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P ++ + T+I G C + +EA L + M+ P++
Sbjct: 497 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE-MKEDGTLPNSG 555
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+ G+ + + +EM
Sbjct: 556 TYNTLIRARLRDGDKAASAELIKEM 580
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + FD V + ++++ R+ + + +I+ + R L AL V
Sbjct: 63 SIVEFNKLLSAIAKMNKFDLVISLGERMQN-LRISYDLYSYNILINCFCRRSQLPLALAV 121
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGC 166
+M + + + ++LLN +I + D +ME P+ ++N L+HG
Sbjct: 122 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME--YQPNTVTFNTLIHGL 179
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + +A + D M+ R QP L T+GT++ GLC +D AL L + M + ++ D
Sbjct: 180 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEAD 238
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ ++I LC ++ AL EM
Sbjct: 239 VVIYTTIIDALCNYKNVNDALNLFTEM 265
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 136 GKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ + + LF + Y S A SY+ L ++ +L+DA +F EM++ R P++V
Sbjct: 8 AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 65
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
F L+ + + D + L E M + + D + LI C +L LAL +
Sbjct: 66 EFNKLLSAIAKMNKFDLVISLGERMQNL-RISYDLYSYNILINCFCRRSQLPLALAVLGK 124
Query: 253 MVRNKIEMD 261
M++ E D
Sbjct: 125 MMKLGYEPD 133
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 13/244 (5%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+KDPK AL L + T P P+ N ++ +L + E Q L +
Sbjct: 523 RKDPKAALDLLRE-----MQTNGHP--PWIKNCTE---MVQQLCFSGRVTEAVQFLDGML 572
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+P+ + + ++ ++ AL +F ++S V + N L+N K+
Sbjct: 573 Q-IGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKL 631
Query: 139 DRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + + ++EK + P +YN+++ C + R+E A D+M+ QPT++T+ +L
Sbjct: 632 DEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSL 691
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C R DEA+KL + MR P+ + + I GL G + AL + EEMV
Sbjct: 692 IDGFCSAGRPDEAIKLWCE-MREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKG 750
Query: 258 IEMD 261
E+D
Sbjct: 751 FELD 754
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK---HDTRVVPEEIIFCNVISFYGRARLLEHA 106
N Y+ ++ L +A D+ Q L ++ D V ++ +++ Y A + A
Sbjct: 173 NSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSV--DKYTLTSLLRCYCNAGRPDDA 230
Query: 107 LQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
VF MS V V TL+ A GK+D +L ME + + ++L+H
Sbjct: 231 NDVFQRMSELGWVDEHV--LTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVH 288
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R++ A +F +M+ L + LI GLC + + A+KL ++ M+ V
Sbjct: 289 GFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKE-MKSSGVA 347
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEE 252
PD ++ +I+ C G+ ++ F E
Sbjct: 348 PDVRLLKKVIEAFCREGDFAVIGPFINE 375
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG A + D + + P + ++ +A + A EM +
Sbjct: 148 LGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDG 207
Query: 121 TVKSFN--TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+V + +LL G+ D D+FQ M + D LM +++ A ++
Sbjct: 208 SVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVEL 267
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
M ++ + T L++G + RVD+A+ + M+ Y D +++ LI+GLC
Sbjct: 268 LGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS-YGFVVDLAMYSVLIEGLC 326
Query: 239 AVGELSLALGFKEEMVRNKIEMD 261
+++ A+ +EM + + D
Sbjct: 327 QQKDIARAVKLFKEMKSSGVAPD 349
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 36/124 (29%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG------------------ 200
+N L+H RLE+ + +F++M L P+ T+ +L YG
Sbjct: 478 FNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQ 537
Query: 201 -----------------LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
LC RV EA++ + M+++ PD +++ + G+C GE+
Sbjct: 538 TNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQI-GFLPDIVTYSAAMNGMCNTGEV 596
Query: 244 SLAL 247
AL
Sbjct: 597 DDAL 600
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y ++I L + K ++ ++K + V P+ + VI + R
Sbjct: 311 FVVDLAMYSVLIEGLCQQKDIARAVKLFKEMK-SSGVAPDVRLLKKVIEAFCREGDFAVI 369
Query: 107 LQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
+E + + V +N +L ++ CG+++ +Q++ V N + G
Sbjct: 370 GPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAA---YQLLRSMVCGGQAVNNDVAGG 426
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ EDA +P +F ++ GLC ++D AL L +DM+ + K
Sbjct: 427 AHMLHIREDA------------KPNSDSFNIVVCGLCKVKKLDMALALTKDMISL-GCKG 473
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+F LI LC + L G +M
Sbjct: 474 KILMFNDLIHELCNMDRLEEGYGIFNQM 501
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 108/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L + +E + +L + + + P ++ + +I +GR L+ A
Sbjct: 364 NLFVYNSMINSLCKTGKLEEAE-LLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYY 422
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F++M + TV S+N+++N GK+ LF ++++K + P +Y L+ G
Sbjct: 423 FNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCK 482
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A+K++ EM + + P VTF LI GLC ++ EA KL ++M+ + + P+
Sbjct: 483 DGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVEL-KILPNEV 541
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LI+G C G + A +EM++ + D
Sbjct: 542 TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDT 575
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 102/203 (50%), Gaps = 6/203 (2%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
K G+ KM ++L + D + P + ++IS Y + L+ A +++ EM+ +
Sbjct: 447 KFGKMKM----AELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIA 502
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+F L+ + K+ + LF +++E + P+ +YN+L+ G A+++
Sbjct: 503 PNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFEL 562
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM+K+ L P T+ LI GLC RV EA + D+ + + D + +L++G C
Sbjct: 563 LDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQ-RLDELCYTALLQGFC 621
Query: 239 AVGELSLALGFKEEMVRNKIEMD 261
G + AL ++EMV ++MD
Sbjct: 622 KEGRIKEALVARQEMVGRGLQMD 644
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 117/250 (46%), Gaps = 38/250 (15%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +L+ Y ++ L R + F+ +++ ++ + VP E +I + +E
Sbjct: 289 KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMI-ELGYVPSEAAVSGLIEGLIKMGSIE 347
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A ++ +++ V + +N+++N++ GK++ LF +M E+ ++P+ +Y IL+
Sbjct: 348 GAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407
Query: 164 HG-------------------CVVSR----------------RLEDAWKVFDEMLKRRLQ 188
G C +S +++ A +F EM+ + L+
Sbjct: 408 DGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLK 467
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
PT+ T+ +LI G C + V +A KL +M + P+ F +LI GLC + +++ A
Sbjct: 468 PTVATYTSLISGYCKDGLVPKAFKLYHEMTG-KGIAPNTVTFTALICGLCQINKMAEASK 526
Query: 249 FKEEMVRNKI 258
+EMV KI
Sbjct: 527 LFDEMVELKI 536
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP + + +++ +A + A +F M ++ L+ + G ++
Sbjct: 711 VPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQ 770
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L M + + +YNIL+ G + ++A K+ D M+ + P +T+ T IY C
Sbjct: 771 LHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCK 830
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
VD A+ + E M++ +KPD VF LI C GEL AL + +M+
Sbjct: 831 RGNVDAAMDMWECMLQ-RGLKPDRVVFNFLIHACCLNGELDRALQLRNDMM 880
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L +A +E + + ++ +P I + + + +E+ALQ+
Sbjct: 713 NSVTYTALVNGLFKAGYVNEAKLLFKRMLVG-EAIPNHITYGCFLDHLTKEGNMENALQL 771
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+ M + TV ++N L+ GK L +M + PD +Y+ ++
Sbjct: 772 HNAMLQGSFANTV-TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCK 830
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A +++ ML+R L+P V F LI+ CL +D AL+L+ DMM + +KP
Sbjct: 831 RGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMM-LRGLKPTQS 889
Query: 229 VFASLI 234
+ SL+
Sbjct: 890 TYHSLM 895
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKY 151
+I Y + + + + V + M + + V++ + LLNA+ K ++ +LF ++
Sbjct: 161 LIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAG 220
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V PD Y +++ + A ++ ++ ++VT+ I GLC RV EA+
Sbjct: 221 VKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAV 280
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++K + +K D + +L+ GLC + E + + +EM+
Sbjct: 281 EVKRSLGE-KGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMI 322
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 83/173 (47%), Gaps = 2/173 (1%)
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
L D ++PE +++ R R L++FD + + V+ + ++ +
Sbjct: 179 NLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCEL 238
Query: 136 GKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++ ++ E S +YN+ ++G S+R+ +A +V + ++ L+ LVT+
Sbjct: 239 KDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTY 298
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
TL+ GLC + +++ ++M+ + V +A V + LI+GL +G + A
Sbjct: 299 CTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAV-SGLIEGLIKMGSIEGAF 350
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 96/214 (44%), Gaps = 6/214 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQL---KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L DL+ + + ++ +IL +L H + P+ +I+ +I + ++ L+ A +
Sbjct: 641 LQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFE 700
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCV 167
+ M ++ L+N + G ++ LF+ ++ P+ +Y +
Sbjct: 701 FWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLT 760
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+E+A ++ + ML+ T VT+ LI G C + EA KL + M+ + + PD
Sbjct: 761 KEGNMENALQLHNAMLQGSFANT-VTYNILIRGYCQIGKFQEAAKLLDVMIGI-GMVPDC 818
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ I C G + A+ E M++ ++ D
Sbjct: 819 ITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPD 852
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 90 FCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
F N +++ Y + + A ++ D M + +++T + G +D D
Sbjct: 780 FANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMD 839
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+++ M ++ + PD +N L+H C ++ L+ A ++ ++M+ R L+PT T+ +L+ L
Sbjct: 840 MWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLA 899
Query: 203 LELRVDE 209
R+ +
Sbjct: 900 QRARLTQ 906
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 13/219 (5%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y Y +I L E ++ ++ L H + + +E+ + ++ + +
Sbjct: 569 KGLSPDTYT---YRPLIAGLCSTGRVSEAKEFINDLHHKHQRL-DELCYTALLQGFCKEG 624
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDAC 157
++ AL EM +Q + S+ L++ L + DR+ LF+++ K + PD
Sbjct: 625 RIKEALVARQEMVGRGLQMDLVSYAVLISGALN--QNDRI--LFELLREMHGKGMQPDNV 680
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
Y IL+ G + S L+ A++ + M+ P VT+ L+ GL V+EA KL
Sbjct: 681 IYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEA-KLLFKR 739
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
M V P+ + + L G + AL M++
Sbjct: 740 MLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQG 778
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/208 (18%), Positives = 100/208 (48%), Gaps = 5/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
Y +++ L K F++ ++I++Q + + I+ NV I+ +++ + A++V
Sbjct: 228 YTVVVKCLCELKDFNKAKEIINQAEGNG--CSLSIVTYNVFINGLCKSKRVWEAVEVKRS 285
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+ ++ + ++ TL+ + + + ++ +++E P + + L+ G +
Sbjct: 286 LGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGS 345
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A+++ +++ K + P L + ++I LC +++EA +L +M + P+ +
Sbjct: 346 IEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA-ELLFSVMAERGLNPNDVTYT 404
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
LI G +L +A + +M+ I
Sbjct: 405 ILIDGFGRRAKLDVAFYYFNKMIECGIS 432
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL +KN N N K R N++ Y+ +I L + + ++L + + ++
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKIN 322
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + L A +++DEM ++ + ++++L+N ++D +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++M K P+ +YN L+ G ++R+E+ ++F EM +R L VT+ TLI GL
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D A K+ + M+ V PD ++ L+ GLC G+L AL E + ++K+E D
Sbjct: 443 AGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y ++ L + D +L +++ ++ + +I+ +I + + AL +
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYKNVNDALNL 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + G+ + L M E+ ++P+ +++ L+ V
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREM 421
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + M + + + S+N L+N ++
Sbjct: 74 SRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL 133
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD + + L++G +R+ +A + D+M QP VTF TLI+
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 193
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + +++ GLC G++ LAL ++M + KIE
Sbjct: 194 GLFLHNKASEAVALI-DRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 260 MD 261
D
Sbjct: 253 AD 254
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK +E ++ ++ +V + + +I +A + A ++
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK+++ +F+ ++K + PD +YNI++ G
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P ++ + T+I G C + +EA L + M+ P++
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE-MKEDGTLPNSG 571
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+ G+ + + +EM
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEM 596
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + FD V + ++++ R+ + + +I+ + R L AL V
Sbjct: 79 SIVEFNKLLSAIAKMNKFDLVISLGERMQN-LRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGC 166
+M + + + ++LLN +I + D +ME P+ ++N L+HG
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME--YQPNTVTFNTLIHGL 195
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + +A + D M+ R QP L T+GT++ GLC +D AL L + M + ++ D
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEAD 254
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ ++I LC ++ AL EM
Sbjct: 255 VVIYTTIIDALCNYKNVNDALNLFTEM 281
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 136 GKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ + + LF + Y S A SY+ L ++ +L+DA +F EM++ R P++V
Sbjct: 24 AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 81
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
F L+ + + D + L E M + + D + LI C +L LAL +
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNL-RISYDLYSYNILINCFCRRSQLPLALAVLGK 140
Query: 253 MVRNKIEMD 261
M++ E D
Sbjct: 141 MMKLGYEPD 149
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P+ F VIS R L A V ++ ++ + +V ++N+L++ G M
Sbjct: 186 RVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNM 245
Query: 142 TD----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
L +++E +SP A ++ +L++G + A +VF+EM ++ + ++VT+ +L
Sbjct: 246 YHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSL 305
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I GLC E +V+E +KL E+M + + P+ F ++KG C G ++ A + + M
Sbjct: 306 ISGLCSEGKVEEGVKLMEEMEDL-GLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364
Query: 258 IEMD 261
+E D
Sbjct: 365 VEPD 368
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I+ L +E +++ +++ D + P EI F V+ + + ++ A
Sbjct: 298 SVVTYNSLISGLCSEGKVEEGVKLMEEME-DLGLSPNEITFGCVLKGFCKKGMMADANDW 356
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
D M+ NV+ V +N L++ GK+ D M + +K +SP+ +YN L+ G
Sbjct: 357 IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSR 416
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S A + DEM ++ ++ +VT+ LI LC + V +A+KL ++M V ++P+
Sbjct: 417 SGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEV-GLEPNHL 475
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ ++I+G C G + A + M
Sbjct: 476 TYNTIIQGFCDKGNIKSAYEIRTRM 500
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P S N L+ G V ++R++ A K F L+RR+ P + TF T+I GLC ++ +A +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+D ++ + + P + SLI G C G
Sbjct: 214 AKD-IKAWGLAPSVATYNSLIDGYCKKG 240
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + +I+ + R+ A + DEM ++ V ++N L+ A+ G++ +
Sbjct: 400 ISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAV 459
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M E + P+ +YN ++ G ++ A+++ M K R + +VT+ I
Sbjct: 460 KLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYF 519
Query: 202 CLELRVDEALKLKEDMM 218
C ++DEA L +M+
Sbjct: 520 CQIGKMDEANDLLNEML 536
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 13/244 (5%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+KDPK AL L + N P P+ N ++ +L + E Q L +
Sbjct: 523 RKDPKAALDLLREMQTN-----GHP--PWIKNCTE---MVQQLCFSGRVTEAVQFLDGML 572
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+P+ + + ++ ++ AL +F ++S V + N L+N K+
Sbjct: 573 Q-IGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKL 631
Query: 139 DRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + + ++EK + P +YN+++ C + R+E A D+M+ QPT++T+ +L
Sbjct: 632 DEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSL 691
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C R DEA+KL + MR P+ + + I GL G + AL + EEMV
Sbjct: 692 IDGFCSAGRPDEAIKLWCE-MREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKG 750
Query: 258 IEMD 261
E+D
Sbjct: 751 FELD 754
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK---HDTRVVPEEIIFCNVISFYGRARLLEHA 106
N Y+ ++ L +A D+ Q L ++ D V ++ +++ Y A + A
Sbjct: 173 NSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSV--DKYTLTSLLRCYCNAGRPDDA 230
Query: 107 LQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
VF MS V V TL+ A GK+D +L ME + + ++L+H
Sbjct: 231 NDVFQRMSELGWVDEHV--LTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVH 288
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R++ A +F +M+ L + LI GLC + + A+KL ++ M+ V
Sbjct: 289 GFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKE-MKSSGVA 347
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEE 252
PD ++ +I+ C G+ ++ F E
Sbjct: 348 PDVRLLKKVIEAFCREGDFAVIGPFINE 375
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG A + D + + P + ++ +A + A EM +
Sbjct: 148 LGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDG 207
Query: 121 TVKSFN--TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+V + +LL G+ D D+FQ M + D LM +++ A ++
Sbjct: 208 SVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVEL 267
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
M ++ + T L++G + RVD+A+ + M+ Y D +++ LI+GLC
Sbjct: 268 LGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS-YGFVVDLAMYSVLIEGLC 326
Query: 239 AVGELSLALGFKEEMVRNKIEMD 261
+++ A+ +EM + + D
Sbjct: 327 QQKDIARAVKLFKEMKSSGVAPD 349
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 36/124 (29%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG------------------ 200
+N L+H RLE+ + +F++M L P+ T+ +L YG
Sbjct: 478 FNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQ 537
Query: 201 -----------------LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
LC RV EA++ + M+++ PD +++ + G+C GE+
Sbjct: 538 TNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQI-GFLPDIVTYSAAMNGMCNTGEV 596
Query: 244 SLAL 247
AL
Sbjct: 597 DDAL 600
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y ++I L + K ++ ++K + V P+ + VI + R
Sbjct: 311 FVVDLAMYSVLIEGLCQQKDIARAVKLFKEMK-SSGVAPDVRLLKKVIEAFCREGDFAVI 369
Query: 107 LQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
+E + + V +N +L ++ CG+++ +Q++ V N + G
Sbjct: 370 GPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAA---YQLLRSMVCGGQAVNNDVAGG 426
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ EDA +P +F ++ GLC ++D AL L +DM+ + K
Sbjct: 427 AHMLHIREDA------------KPNSDSFNIVVCGLCKVKKLDMALALTKDMISL-GCKG 473
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+F LI LC + L G +M
Sbjct: 474 KILMFNDLIHELCNMDRLEEGYGIFNQM 501
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 12/245 (4%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
++ +L+ +DP +AL F P FR++ Y ++ LGRA+ FD
Sbjct: 345 YQANQILKQLQDPSVALGFFDWLRRQPG---------FRHDGHTYTTMVGILGRARRFDS 395
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
+ ++L Q+ D P + + +I YG A L+ AL VF+EM + ++ TL+
Sbjct: 396 ISKLLEQMVKDG-CQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLI 454
Query: 130 NAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G ID +++ M E +SPD +Y+++++ + L A +F EM++
Sbjct: 455 DIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCV 514
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P LVT+ +I + ALKL DM +PD ++ +++ L G L A
Sbjct: 515 PNLVTYNIMIALQAKARNYEMALKLYHDMQNA-GFQPDKVTYSIVMEALGHCGYLEEAES 573
Query: 249 FKEEM 253
EM
Sbjct: 574 VFVEM 578
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 93/197 (47%), Gaps = 4/197 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II LG+A + ++ + VP + + +I+ +AR E AL+++ +M
Sbjct: 485 YSVIINCLGKAGNLAAAHWLFCEMV-EHGCVPNLVTYNIMIALQAKARNYEMALKLYHDM 543
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ Q +++ ++ A+ CG ++ +F ++ +K PD Y +L+ + +
Sbjct: 544 QNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNV 603
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + + ML L P + T +L+ R+ +A L + M+ + ++P Q + +
Sbjct: 604 EKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVAL-GLRPSLQTY-T 661
Query: 233 LIKGLCAVGELSLALGF 249
L+ C + + +GF
Sbjct: 662 LLLSCCTEAQPAHDMGF 678
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T++ + + D ++ L Q+++ P+ +YN L+H + L++A VF+EM
Sbjct: 379 TYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEM 438
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ +P VT+ TLI +D A+ + + M + PD ++ +I L G
Sbjct: 439 QEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEA-GLSPDTFTYSVIINCLGKAGN 497
Query: 243 LSLALGFKEEMVRN 256
L+ A EMV +
Sbjct: 498 LAAAHWLFCEMVEH 511
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 5/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA P R N + Y ++ L ++ E +L ++ + V + + + +I
Sbjct: 114 EAHP--AARPNAVSYTTVMRGLCASRRTGEAVALLRSMQA-SGVRADVVTYGTLIRGLCD 170
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
A L+ AL++ DEM VQ V ++ LL G+ + +F+ M + + PD
Sbjct: 171 ASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIM 230
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ L+ + A KV D M++R L+P +VT+ LI LC E V EAL L+++M
Sbjct: 231 FTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEM- 289
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V PD + +LI GL V E+ A+ F EEM++
Sbjct: 290 DDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQG 327
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 109/208 (52%), Gaps = 3/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y +I L A D ++L ++ + V P +++ ++ Y R+ +
Sbjct: 155 RADVVTYGTLIRGLCDASELDAALELLDEM-CGSGVQPNVVVYSCLLRGYCRSGRWQDVG 213
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+VF++MS ++ V F L++ + GK + + +M ++ + P+ +YN+L++
Sbjct: 214 KVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSL 273
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP 225
+ +A + EM + + P +VT+ TLI GL L +DEA+ E+M++ V+P
Sbjct: 274 CKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEP 333
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
D F S+I GLC +G ++ A+ +E M
Sbjct: 334 DVVTFNSVIHGLCKIGRMTQAVKVREMM 361
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 120 RTVKSFNTLLNAMLTCG------KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
R S+NT+L A+ G + D+ + P+A SY +M G SRR
Sbjct: 81 RDAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTG 140
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + M ++ +VT+GTLI GLC +D AL+L ++M V+P+ V++ L
Sbjct: 141 EAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCG-SGVQPNVVVYSCL 199
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
++G C G E+M R I+ D
Sbjct: 200 LRGYCRSGRWQDVGKVFEDMSRRGIKPD 227
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+ T++ + + L + M+ V D +Y L+ G + L+ A ++ DEM
Sbjct: 125 SYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEM 184
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+QP +V + L+ G C R + K+ EDM R +KPD +F LI LC G+
Sbjct: 185 CGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSR-RGIKPDVIMFTGLIDDLCKEGK 243
Query: 243 LSLALGFKEEMVRNKIE 259
A K+ MV+ +E
Sbjct: 244 TGKAAKVKDMMVQRGLE 260
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 2/212 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ +I R ++ +L + + P+ + +I+ + + ++ A +
Sbjct: 369 NLVTYNYLIGGFLRVHKVKMAMNLMDELAI-SGLEPDSFTYSILINGFSKMWEVDRAEKF 427
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
M ++ + + LL AM G ++R LF M+K DA +Y+ ++HG S
Sbjct: 428 LCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKS 487
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++ ++ +ML L P VT+ LI ++EA ++ + M PD V
Sbjct: 488 GDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMT-ASGFVPDVAV 546
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLIKG A G+ L EM + D
Sbjct: 547 FDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFD 578
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 8/195 (4%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ K G+ +V+ ++ Q + VV ++ N + G R AL + EM
Sbjct: 238 LCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLI-NSLCKEGSVR---EALTLRKEMDDKG 293
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGCVVSRRLED 174
V V ++NTL+ + ++D + M + V PD ++N ++HG R+
Sbjct: 294 VAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQ 353
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A KV + M +R LVT+ LI G +V A+ L D + + ++PD+ ++ LI
Sbjct: 354 AVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLM-DELAISGLEPDSFTYSILI 412
Query: 235 KGLCAVGELSLALGF 249
G + E+ A F
Sbjct: 413 NGFSKMWEVDRAEKF 427
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 6/223 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +KP +++ Y+ II L + K+ + + ++ + P+ + + +I +
Sbjct: 189 EGHSVKP---DVVMYNTIINSLCKNKLLGDACDVYSEMIVKG-ISPDVVTYTTLIHGFCI 244
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
L+ A + +EM N+ V +FN L++A+ GK+ L +M K + PD +
Sbjct: 245 MGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFT 304
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + ++ A VF M +R + P + + +I GLC VDEA+ L E+ M
Sbjct: 305 YNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEE-M 363
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ N+ PD + SLI GLC L A+ + M I+ D
Sbjct: 364 KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPD 406
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + N+I+ + ++++ A+ +F+EM N+ + ++N+L++ + ++R
Sbjct: 333 VTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAI 392
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L + M E+ + PD SY IL+ G S RLEDA ++F +L + + + LI L
Sbjct: 393 ALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRL 452
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
C DEAL LK M PDA F +I+ L
Sbjct: 453 CKAGFFDEALDLKSK-MEDKGCMPDAVTFDIIIRAL 487
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ AL D++ + Q S+ TL+N + G+ + L + +E + V PD YN
Sbjct: 143 IKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNT 202
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++ L DA V+ EM+ + + P +VT+ TLI+G C+ + EA L + M++
Sbjct: 203 IINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNE-MKLK 261
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
N+ P+ F LI L G++ A
Sbjct: 262 NINPNVCTFNILIDALSKEGKMKEA 286
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
FN +L++++ + LF+ E ++PD C+ +IL++ + A+ VF +L
Sbjct: 60 FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
KR P +T TLI GLC + +AL D + + D + +LI GLC GE
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYF-HDQLVAQGFQLDQVSYGTLINGLCKTGE 177
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 68/170 (40%), Gaps = 37/170 (21%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + KM DE + ++KH ++P+ + + ++I + LE A+ + M
Sbjct: 340 YTNMINGLCKTKMVDEAMSLFEEMKHK-NMIPDIVTYNSLIDGLCKNHHLERAIALCKRM 398
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--------------------------- 146
+Q V S+ LL+ + G+++ ++FQ
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458
Query: 147 ---------IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ +K PDA +++I++ + A K+ EM+ R L
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGL 508
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 119/236 (50%), Gaps = 13/236 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
++R Q+ P+L + F + FR + H +L+I L + FD +IL
Sbjct: 70 VMREQRRPELGFRFF---------IWTTRRRSFRSWVTH-NLVIDMLAKDDGFDTYWKIL 119
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+LK+ +P F +I+ Y ++ + E A++ F +M F + V ++N++L+ M+
Sbjct: 120 EELKNSNIQIPPPT-FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQ 178
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ Q+++ +P+ ++ IL++G + + +DA K+FDEM ++ + P +
Sbjct: 179 KEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMI 238
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+ ++ GLC R D+ +L + M+V PD+ +L+ G C +G++ A
Sbjct: 239 YTIILSGLCQAKRTDDVHRLL-NTMKVSGCCPDSITCNALLDGFCKLGQIDEAFAL 293
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L RAK +DEVQ+ ++ + P+ +++ +I + ++++AL + ++M
Sbjct: 309 YSSLIDGLFRAKRYDEVQEWCRKM-FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDM 367
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + +N L+ G +D+ L +I + P +C+Y IL+ G + L
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLL 427
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
++A ++F++M P+++TF LI GLC ++EA L
Sbjct: 428 DEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHL 468
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + R + DE +QI +Q++ + P + F +I +A LE A +F +M
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQME-NLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472
Query: 114 S-----------SFNVQRTV--KSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
S R + S T++ + G I + L Q+ + V PD +Y
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTY 532
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N+L++G ++ + A+K+F E+ + P VT+GTLI G R ++A ++ + M++
Sbjct: 533 NVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P + V+ L+ C G+LS+A + +R+
Sbjct: 593 -NGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRS 628
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 40/245 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-------FCN---------- 92
N + Y +I++ L +AK D+V ++L+ +K + P+ I FC
Sbjct: 235 NTMIYTIILSGLCQAKRTDDVHRLLNTMKV-SGCCPDSITCNALLDGFCKLGQIDEAFAL 293
Query: 93 ---------VISFYGRARLLEHALQV--FDEMSSF-------NVQRTVKSFNTLLNAMLT 134
V+ G + L++ + +DE+ + ++ V + L+
Sbjct: 294 LQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCE 353
Query: 135 CGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G +D ++ M ++ +SPD YN L+ G L+ A + E+ K PT T
Sbjct: 354 VGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCT 413
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA--LGFKE 251
+ LI G+C +DEA ++ M + P F +LI GLC GEL A L +K
Sbjct: 414 YTILICGMCRNGLLDEARQIFNQMENL-GCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472
Query: 252 EMVRN 256
E+ +N
Sbjct: 473 EIGKN 477
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 113/220 (51%), Gaps = 5/220 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+R N + ++ ++ L AK DE IL + P + + ++ + E A
Sbjct: 226 WRVNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEA 285
Query: 107 LQVFDEMS---SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
L++ M+ + V S+NT++N G++D+ +LF Q++++ + PD +YN +
Sbjct: 286 LELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTV 345
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G ++ ++ A VF +ML + ++P+ T+ LI+G + E ++L E+M ++
Sbjct: 346 IDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEM-STHD 404
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++PD ++A L+ LC G + A + ++R I+ DA
Sbjct: 405 LEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDA 444
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 18/221 (8%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q L P N+++Y +I L + D+ +Q+ + E C V +
Sbjct: 459 QGLSP---NVVNYGALIDALCKLGRVDDAILKFNQM------INEVYGLCTVEKW----- 504
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
E A ++ EM ++ V FNTL+ + G++ L ++M + V PD SYN
Sbjct: 505 --EKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYN 562
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G ++ R ++A K+ D M+ L+P T+ TL++G C R+D+A L +M+ +
Sbjct: 563 TLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREML-M 621
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +++ GL G S A M+ ++ + D
Sbjct: 622 NGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWD 662
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 104/222 (46%), Gaps = 25/222 (11%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHAL 107
N++ Y+ ++ +E ++LH + D + P+ + + VI+ + R ++ A
Sbjct: 265 NVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAY 324
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
+F +M + V ++NT+++ + +DR +FQ +++K V P +YN L+HG
Sbjct: 325 NLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGY 384
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + + ++ ++ +EM L+P + L+ LC R EA + + ++R +KPD
Sbjct: 385 LSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIR-KGIKPD 443
Query: 227 AQV---------------------FASLIKGLCAVGELSLAL 247
A + + +LI LC +G + A+
Sbjct: 444 AMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAI 485
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 41/220 (18%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVF----------------------------DE- 112
+V P+ + +I + R LEH VF DE
Sbjct: 190 KVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEA 249
Query: 113 -------MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK----YVSPDACSYNI 161
M F V S+NTL+ + + +L +M PD SYN
Sbjct: 250 TNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNT 309
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++G +++ A+ +F +M+ R + P +VT+ T+I GLC VD A + + M+
Sbjct: 310 VINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLD-K 368
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VKP + LI G + G+ + EEM + +E D
Sbjct: 369 GVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPD 408
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R +++ ++ ++ L R E Q+++ +L V P+ I + ++ + +
Sbjct: 517 QGIRLDVVVFNTLMCDLCREGRVMEAQRLI-ELMLRVGVRPDVISYNTLVDGHCLTGRTD 575
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A ++ D M S ++ ++NTLL+ +ID L +++ +PD +YN ++
Sbjct: 576 EAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTIL 635
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
HG + R +A +++ M+ R Q + T+ ++ GLC VDEA K+
Sbjct: 636 HGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKM 685
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161
+++ A+ +FD+M + V ++ L++A+ G++D F M V
Sbjct: 445 MIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEV--------- 495
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+G + E A ++ EML + ++ +V F TL+ LC E RV EA +L E M+RV
Sbjct: 496 --YGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRV- 552
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V+PD + +L+ G C G A + MV
Sbjct: 553 GVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMV 585
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 93/197 (47%), Gaps = 3/197 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y+ ++ DE ++L + + P E + ++ Y +AR ++ A
Sbjct: 555 RPDVISYNTLVDGHCLTGRTDEAAKLLDVMV-SIGLKPNEFTYNTLLHGYCKARRIDDAY 613
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+ EM V ++NT+L+ + G+ +L+ ++ D +YNI+++G
Sbjct: 614 SLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGL 673
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +++A+K+F + + LQ ++TF +I L + ++A+ L + Y + PD
Sbjct: 674 CKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFA-TISAYGLVPD 732
Query: 227 AQVFASLIKGLCAVGEL 243
+ + + + L G L
Sbjct: 733 VETYCLIAENLIKEGSL 749
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAM-------------LTCGKIDRMTDLFQIMEKYV 152
AL++FD + +V +FN LL A+ L DRM + V
Sbjct: 135 ALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMV---RECSDKV 191
Query: 153 SPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+PD C+Y+IL+ GC RLE + VF +LK + + F L+ GLC R+DEA
Sbjct: 192 APDRCTYSILI-GCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRLDEAT 250
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ M + P+ + +L+KG C
Sbjct: 251 NILLWRMPEFGCTPNVVSYNTLVKGFC 277
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y+ ++ +A+ D+ +L ++ + P+ + + ++ +
Sbjct: 589 LKP---NEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPT-PDVVTYNTILHGLFQTGRF 644
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNIL 162
A +++ M + Q + ++N +LN + +D +FQ + K + ++NI+
Sbjct: 645 SEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIM 704
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + + EDA +F + L P + T+ + L E ++E L + M
Sbjct: 705 IGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEE-LGVLFSAMEENG 763
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P++++ +L++ G++S A + ++ ++A
Sbjct: 764 TAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEA 803
>gi|302808451|ref|XP_002985920.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
gi|300146427|gb|EFJ13097.1| hypothetical protein SELMODRAFT_123132 [Selaginella moellendorffii]
Length = 574
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 120/255 (47%), Gaps = 12/255 (4%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+ +++ +L+ QK+ +A F A+ F++++ Y I+ LGRAK F
Sbjct: 33 NAYQVNEILKQQKEAGVAYNFF---------IWARKQAGFKHDVHTYTTILGILGRAKSF 83
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D + +L ++ + P + + +I YGRA L+ +L++F+ M + ++ T
Sbjct: 84 DVLNNLLDEMIREG-CEPNVVTYNRLIHCYGRANDLDSSLKLFNVMQMVGCEPDRVTYCT 142
Query: 128 LLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L++ G D +L+ Q+ PD +Y+I++H + +L A+K+F EM R
Sbjct: 143 LIDLQAKAGFHDAAMELYRQMQHAGFRPDTFTYSIIIHCLGKAGKLNAAYKLFCEMTDRG 202
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P+LVT+ +I + D ALKL D+ V PD + +++ L G + A
Sbjct: 203 YAPSLVTYNIIIDLHAKAGKFDMALKLYSDLQEV-GYAPDRVTYGIIMEVLGNCGHIEDA 261
Query: 247 LGFKEEMVRNKIEMD 261
EEM R D
Sbjct: 262 EQVFEEMERAGWVAD 276
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ L + ++ ++++ ++ V + +I Y L+ A ++
Sbjct: 224 NDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEV-SAYTYDPLIRGYCEKGQLDEASRL 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM S T+ ++NT++ + G++ L +M K + PD SYN L++G
Sbjct: 283 GEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTR 342
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A+ +F E+ R L P++VT+ TLI GLC +D A++LK++M++ + PD
Sbjct: 343 LGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIK-HGPDPDVF 401
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F L++G C +G L +A +EM+ ++ D
Sbjct: 402 TFTILVRGFCKLGNLPMAKELFDEMLNRGLQPD 434
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P R A + R+ + KL +P+ E + F +L+ Y++ I L +
Sbjct: 433 PDRFAYITRIVGELKLG-----DPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 487
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +++ ++ ++ +VP+ + + ++I + A L A VF EM S + +V ++ L
Sbjct: 488 EASELVKKMLYNG-LVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVL 546
Query: 129 LNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+++ G++ + F++ EK V P+ +YN L++G R+++ A+K F EM + +
Sbjct: 547 IHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGI 606
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
P T+ LI C EAL+L +DM+ ++PD+ ++L+K L
Sbjct: 607 SPNKYTYTILINENCNLGHWQEALRLYKDMLD-REIQPDSCTHSALLKHL 655
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + ++ + + ++ ALQ+ +M ++N L+N + G++++ +L
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKEL 247
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q M + + A +Y+ L+ G +L++A ++ +EML R PTLVT+ T++YGLC
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307
Query: 204 ELRVDEALKLKEDM----------------------------------MRVYNVKPDAQV 229
RV +A KL + M +R + P
Sbjct: 308 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVT 367
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI GLC +G+L +A+ K+EM+++ + D
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPD 399
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMH 164
A +V++ M ++ TV ++NT+L++ GK+ L M+K P+ +YN+L++
Sbjct: 174 AREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVN 233
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G S LE A ++ EML+ L+ + T+ LI G C + ++DEA +L E+M+ V
Sbjct: 234 GLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAV- 292
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + +++ GLC G +S A + MV + D
Sbjct: 293 PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD 329
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L+ Y+ I+ L + + +++L + + ++P+ + + +I Y R + A +
Sbjct: 294 TLVTYNTIMYGLCKWGRVSDARKLLDVMV-NKNLMPDLVSYNTLIYGYTRLGNIGEAFLL 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGC 166
F E+ + +V ++NTL++ + G +D R+ D ++++ PD ++ IL+ G
Sbjct: 353 FAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKD--EMIKHGPDPDVFTFTILVRGF 410
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNV 223
L A ++FDEML R LQP + T I G EL++ + A ++E+M+
Sbjct: 411 CKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVG---ELKLGDPSKAFGMQEEML-ARGF 466
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + I GL +G L A ++M+ N + D
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPD 504
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A +V++ M++ ++PT+VT+ T++ C + +V EAL+L M ++ P+ +
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKM-GCLPNDVTYN 229
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+ GL GEL A +EM+R +E+ A
Sbjct: 230 VLVNGLSHSGELEQAKELIQEMLRLGLEVSA 260
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
Query: 45 KPFRYNLLHYDLII-TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K F +++ ++++I T G+ K+ D ++ +L D P I + +I Y +
Sbjct: 73 KGFSPDVVTHNIMIGTFCGKGKI-DLALKVFEELLKDNNCKPTLITYTILIEAYILEGGI 131
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
+ AL++ DEM S ++ ++N + + GK+DR + + + + PD +YNIL
Sbjct: 132 DEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNIL 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + + ++ K E+ R +P +VT+ LI LC + +++E++ L + +M+
Sbjct: 192 LRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK-VMKEKG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ PDA + LI C G+L +A+ F + M+
Sbjct: 251 LTPDAYCYDPLIAAFCREGKLDMAIEFLDCMI 282
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YD +I R D + L + D +P+ + + +++ + +HA+++F ++
Sbjct: 258 YDPLIAAFCREGKLDMAIEFLDCMICDG-FLPDIVNYNTIMAALCKNGNGDHAVEIFGKL 316
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V S+NT+L+A+ + G R + Q++ K + PD +YN L+ +
Sbjct: 317 DEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMV 376
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A + +ML R QP +V++ T++ GLC R+D+A+++ M+ +P+ +
Sbjct: 377 DEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIE-NGCQPNETTYTL 435
Query: 233 LIKGLCAVGELSLALGFKEEM-VRNKIEMDA 262
LI+G+ G + A+ + + N I D+
Sbjct: 436 LIEGIGFSGSRTQAMELANSLYIMNAISEDS 466
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%)
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L+ ID+ T + I+EK+ PD +YN ++ G + R+E A V D M ++
Sbjct: 16 LIKGFFNSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGF 75
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +VT +I C + ++D ALK+ E++++ N KP + LI+ G + AL
Sbjct: 76 SPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135
Query: 248 GFKEEMVRNKIEMDA 262
+EM+ +E D
Sbjct: 136 KLLDEMLSRGLEPDT 150
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 5/181 (2%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
++ D+ +++ L+ + P+ + VIS + +A +E A V D M V
Sbjct: 23 SRNIDKATRVMGILEKHGK--PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVV 80
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ N ++ GKID +F+ + + P +Y IL+ ++ +++A K+ DE
Sbjct: 81 THNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDE 140
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
ML R L+P T+ + GLC E +VD A + + KPD + L++ L G
Sbjct: 141 MLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVR-TLNSRGCKPDVITYNILLRALLNQG 199
Query: 242 E 242
+
Sbjct: 200 K 200
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 102/247 (41%), Gaps = 40/247 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ L +DE ++ + ++ P + + +IS R +E ++ +
Sbjct: 184 DVITYNILLRALLNQGKWDEGEKWMSEI-FSRGCEPNVVTYSILISSLCRDGKIEESVNL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILM---- 163
M + ++ L+ A GK+D + M + ++ PD +YN +M
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFL-PDIVNYNTIMAALC 301
Query: 164 ------HGCVVSRRLEDA----------------WKVFD---------EMLKRRLQPTLV 192
H + +L++ W D +ML + + P ++
Sbjct: 302 KNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVI 361
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ +LI LC + VDEA+ L DM+ +P+ + +++ GLC + A+
Sbjct: 362 TYNSLISCLCRDGMVDEAIGLLADMLS-GRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAA 420
Query: 253 MVRNKIE 259
M+ N +
Sbjct: 421 MIENGCQ 427
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ ++++ +V SFNTL+N + G +D
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRL---AQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD +Y++L++G ++++A ++ +EML L P VTF TLI
Sbjct: 190 GFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C +VD A+++ + M+ PD + +LI GLC G+L A EEM+ ++
Sbjct: 250 GHCKNGKVDLAMEIYKQMLS-QGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 96/178 (53%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +++ Y R L+ ++ M + VQ V +++ L+N + K+D ++
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++++ + P+ ++ L+ G + +++ A +++ +ML + P L+T+ TLIYGLC
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +A L E+M+ + +KPD + +LI G C G+L + ++ M+R I +D
Sbjct: 289 RGDLGQARDLVEEMI-MKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLD 345
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 108/218 (49%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + DE ++L+++ D +VP + F +I + +
Sbjct: 198 HATGVQPDVYT---YSVLINGLCKESKMDEANEMLNEML-DNGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
++ A++++ +M S + ++NTL+ + G + + DL + ++ K + PD +
Sbjct: 254 NGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE +++ M++ ++ VT+ LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + ++ C G++ A EM RN
Sbjct: 374 TV-GLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRN 410
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
+I+E P +NILMH + A VFD + K L+P++V+F TL+ G
Sbjct: 126 EILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLG 185
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+DE +LK M V+PD ++ LI GLC ++ A EM+ N +
Sbjct: 186 DLDEGFRLKS-AMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGL 237
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 113/211 (53%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++ A+
Sbjct: 299 NVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++ G
Sbjct: 358 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 417
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + ++A ++ +EM+ + LQP ++T+ T+ GLC E R+++A++ +DM ++P
Sbjct: 418 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDM----GIRP 473
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ ++I GLC E A+ M+ N
Sbjct: 474 NTVLYNAIILGLCKRRETHSAIDLFAYMIGN 504
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 55 DLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
D +I L GR + + + + L+ R VP+ + + ++ + + A+++ DEM
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRR--RCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ ++N ++N + G++D + + + Y P+ SYNI++ G + R
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA ++ EM ++ P +VTF LI LC + V+ AL++ E + + Y P++ +
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK-YGCSPNSLSYNP 340
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
L+ C ++ A+ F + MV
Sbjct: 341 LLHAFCKQKKMDKAMAFLDLMV 362
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I KL + E +++L P+ + + +++ Y A ++ A + E +
Sbjct: 104 LIKKLSASGRTAEARRVLAACG------PDVMAYNAMMAGYCGAGQVDAARRWCAERA-- 155
Query: 117 NVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
V+R + +TL+ + G+ + + L +++ + PD +Y IL+ + A
Sbjct: 156 -VERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 214
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
K+ DEM + P +VT+ ++ G+C E RVD+A++ +++ Y +P+ + ++K
Sbjct: 215 MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLK 273
Query: 236 GLC 238
GLC
Sbjct: 274 GLC 276
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V ++N ++ G++D E+ V DA + + L+ G R +A V DE
Sbjct: 128 VMAYNAMMAGYCGAGQVDAARRW--CAERAVERDAYTCDTLIRGLCGRGRTANALAVLDE 185
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
ML+RR P +VT+ L+ C +A+KL D MR PD + ++ G+C G
Sbjct: 186 MLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL-DEMRDKGCTPDIVTYNVVVNGICQEG 244
Query: 242 ELSLALGF 249
+ A+ F
Sbjct: 245 RVDDAIEF 252
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++T L R+ D ++LHQLK D P I + VI +A + AL++
Sbjct: 369 DIVSYNTLLTALCRSGEVDVAVELLHQLK-DKGCAPVLISYNTVIDGLTKAGKTKEALEL 427
Query: 110 FDEMSSFNVQRTVKSFNTLL----------NAMLTCGKIDRMT----------------- 142
+EM S +Q + +++T+ +A+ GK+ M
Sbjct: 428 LNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCK 487
Query: 143 --------DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
DLF M P+ +Y IL+ G +++A + DE+ R
Sbjct: 488 RRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 539
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 110/212 (51%), Gaps = 5/212 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y +I + ++ ++ E +L++ L + R P+ + F + + + ++ A
Sbjct: 348 DIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIR--PDVVTFSIWVDVFCKKGMVSEAQS 405
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+ + M ++ V ++N+L++ ++D +F IM K +PD SYNIL+ G
Sbjct: 406 IINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYC 465
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S R+++A ++FDEM + L P +T TLI GLC R A +L + M + PD
Sbjct: 466 KSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGS-HGCPPDL 524
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+++L+ G C G L AL E + +++++
Sbjct: 525 ITYSTLLSGFCKHGHLDEALALFEALKKSQLK 556
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
PE + + +I + RL+ A+ +F M S + TV ++N+L+ M G+ + + L
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++E + PD +++IL+ + +A VF +M++ ++P +VT+ +LI+G+C
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
E+ L +M+ N++PD F+ + C G +S A
Sbjct: 362 SSLWKESSTLLNEMLS-RNIRPDVVTFSIWVDVFCKKGMVSEA 403
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + ++I ++ L + + + +EM S N++ V +F+ ++ G + +
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSI 406
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+M E+ + P+ +YN LM G + ++++A KVFD M+ + P ++++ LI G C
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCK 466
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
R+DEA +L ++M + P++ +LI GLC G
Sbjct: 467 SERIDEAKQLFDEMSH-KGLTPNSITHTTLISGLCQAG 503
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y +II L + ++ +E + + ++ + P + + ++I + + A +F
Sbjct: 244 VVSYSIIIDSLCKNRLVNEAVDLFYHMR-SIGISPTVVTYNSLIYGMCNSGQWKQASILF 302
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
EM +N++ V +F+ L++A+ G + +F ++++ + PD +Y+ L+HG S
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++ + +EML R ++P +VTF + C + V EA + ++M ++P+
Sbjct: 363 SLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII-NLMIERGLRPNVVT 421
Query: 230 FASLIKGLC 238
+ SL+ G C
Sbjct: 422 YNSLMDGYC 430
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
A+ +M + + V S++ +++++ ++ DLF M +SP +YN L++
Sbjct: 228 AIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIY 287
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G S + + A +F EML+ ++P +VTF L+ LC E V EAL + M+++ ++
Sbjct: 288 GMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQI-AME 346
Query: 225 PDAQVFASLIKGLC 238
PD ++SLI G+C
Sbjct: 347 PDIVTYSSLIHGVC 360
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 95/196 (48%), Gaps = 9/196 (4%)
Query: 39 TEAQPL------KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN 92
+EAQ + + R N++ Y+ ++ DE +++ + + P+ + +
Sbjct: 401 SEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVF-DIMVNKGCAPDVLSYNI 459
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY- 151
+I Y ++ ++ A Q+FDEMS + + TL++ + G+ +LF+ M +
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
PD +Y+ L+ G L++A +F+ + K +L+P V L+ G+C ++++A
Sbjct: 520 CPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAK 579
Query: 212 KLKEDMMRVYNVKPDA 227
+L + + ++PD
Sbjct: 580 ELFSS-LSIEELQPDV 594
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 82/180 (45%), Gaps = 3/180 (1%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
K G FD+ +Q+ H P F +++ R + + + ++ +M F V
Sbjct: 78 KGGSFSNFDDALAYFNQMVH-MNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVS 136
Query: 120 RTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+V + L+N + + + L +I + P ++N L++G + R+ +A +
Sbjct: 137 CSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQ 196
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
D ++ R QPT+ T ++ GLC + A+ + M+ + + +P+ ++ +I LC
Sbjct: 197 LDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVEL-DCEPEVVSYSIIIDSLC 255
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L + +E +L ++ D P+ + + ++I G+ + A ++F EM
Sbjct: 297 YNALLNGLCKMGRLEEAIDLLRKIV-DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 355
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+S + + L+ +L GKI + + +++ M + PD + + ++ G + R+
Sbjct: 356 ASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 415
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++F M R L P V + LI+GLC ++D AL++ M + + PD +
Sbjct: 416 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF-CTPDTITYNI 474
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI GLC G++ A F +EM+ + D
Sbjct: 475 LIDGLCKSGDVEAARAFFDEMLEAGCKPD 503
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + +I +A + A+++F M + + ++ L++ + K+D +
Sbjct: 396 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 455
Query: 144 LFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ M+K + +PD +YNIL+ G S +E A FDEML+ +P + T+ LI GLC
Sbjct: 456 MLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLC 515
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D A + +DM V++SL+ GLC G+L EM R+ +
Sbjct: 516 KAGNTDAACGVLDDM------SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV 565
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI---IFCNVISFYGRARLLEHALQVF 110
+ ++I L +A M + H L +T I + ++++ + + ++ A+ +
Sbjct: 227 FSILINGLVKAGMMIQA----HSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALM 282
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
+++++ T+ ++N LLN + G+++ DL +I++ +PD +Y L+ G
Sbjct: 283 EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 342
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+R +A+K+F EM R L V + LI GL ++ +A + + M + PD
Sbjct: 343 KRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTS-HGCVPDVVT 401
Query: 230 FASLIKGLCAVGELSLAL 247
+++I GL G + A+
Sbjct: 402 LSTMIDGLSKAGRIGAAV 419
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 102/236 (43%), Gaps = 28/236 (11%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
A+++FK+ EA+ L P N + Y +I L +A+ D ++L Q+K
Sbjct: 418 AVRIFKS-------MEARGLAP---NEVVYSALIHGLCKARKMDCALEMLAQMKK-AFCT 466
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I ++ +E A FDEM + V ++N L++ + G D +
Sbjct: 467 PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGV 526
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M S Y+ L+ G S +LE +F EM +R T LI+ LC
Sbjct: 527 LDDM----SSSRFVYSSLVDGLCKSGKLEGGCMLFHEM-ERSGVANSQTRTRLIFHLCKA 581
Query: 205 LRVDEALKL-----KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
RVDEA+ L KE M P + S+I L G+++ +EM R
Sbjct: 582 NRVDEAVSLFNAIRKEGM-------PHPYAYNSIISALIKSGKVNEGQAVYQEMTR 630
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 106 ALQVFDEMSS--FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNIL 162
A ++F +SS F Q +V + N LL+ + +L + + PD ++N+L
Sbjct: 101 AWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVL 160
Query: 163 MHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+ G ++R E+A+ V EM + + P+L T +++GLC +V A+ E + R
Sbjct: 161 ITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSM 220
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V A F+ LI GL G + A +E N +D
Sbjct: 221 PVS--AATFSILINGLVKAGMMIQAHSLAQETTTNGCTID 258
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 99 RARLLEH---ALQVFDEMSSFNVQRTVK-----SFNTLLNAMLTCGKIDRMTDLFQIMEK 150
R RL+ H A +V + +S FN R ++N++++A++ GK++ ++Q M +
Sbjct: 571 RTRLIFHLCKANRVDEAVSLFNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEMTR 630
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ PD +YN L++G + + R++ A + EM R P
Sbjct: 631 WWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRGYVP 669
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 116 FNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
N Q T V S++ +N + G+I ++F+ ME K +PD+ +YNIL++G +LE
Sbjct: 84 LNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLE 143
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+ DEM R PT+VT+ TLI+G C RVD A+ + D M + P+ + +L
Sbjct: 144 MGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDIL-DEMEHRGITPNTVTYTAL 202
Query: 234 IKGLCAVGELSLALGFKEEM 253
I+GLC GE+ A+ +EM
Sbjct: 203 IQGLCDCGEVERAILVLKEM 222
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y I L + E +I +++ P+ + +I+ + LE + +
Sbjct: 90 DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSA-PDSFTYNILINGLCKDAQLEMGVSL 148
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEM + TV ++ TL++ T G++D D+ ME + ++P+ +Y L+ G
Sbjct: 149 MDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCD 208
Query: 169 SRRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+E A V EM R + P +VT+ LI+GLC + + ++ ++M+ + P+
Sbjct: 209 CGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMI-ISGCFPN 267
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI GLC G A EMV E+D
Sbjct: 268 NATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELD 302
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + A ++ A+ + DEM + ++ L+ + CG+++R +
Sbjct: 159 PTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILV 218
Query: 145 FQIME---KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ M+ P+ +Y L+HG E + DEM+ P T+ LI+GL
Sbjct: 219 LKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGL 278
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C + EA L +M+ + + D ++ SLI GLC +GEL A + MV + D
Sbjct: 279 CQKGSFLEAAVLLNEMVAI-GCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 5/190 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
N++ Y +I L + +F+ + L ++ + P + +I + LE A+
Sbjct: 232 NVVTYTQLIHGLCQKGLFEMGMEFLDEMII-SGCFPNNATYTALIHGLCQKGSFLEAAV- 289
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+ +EM + + V +N+L++ + G++D ++ +M EK V+PD +Y L+ G
Sbjct: 290 LLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLC 349
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ L++A + EM + + P VT+ TLI G R D AL+L + M+ + P
Sbjct: 350 DAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNE-MKSNGLMPAG 408
Query: 228 QVFASLIKGL 237
++ L K L
Sbjct: 409 DIYKILFKSL 418
>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
protein [Medicago truncatula]
Length = 970
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 116/214 (54%), Gaps = 5/214 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARLLEHALQ 108
N + Y ++I + M D + ++ D + E I + ++I+ + + L A
Sbjct: 392 NDVTYSILIDSFCKRGMLDVAESYFGRMIEDG--IRETIYPYNSLINGHCKFGDLSAAEF 449
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
++ +M + ++ T +F TL++ ++++ L++ M EK ++P ++ L++G
Sbjct: 450 LYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLC 509
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + +A K+FDEM++R+++PT VT+ +I G C +D+A +L EDM+ + PD
Sbjct: 510 STNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLH-NGLVPDT 568
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ LI GLC+ G +S A F +++ + ++++
Sbjct: 569 YTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLN 602
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+ P + + ++ + ++ A +F++M + N+ ++ L+++ G +
Sbjct: 703 KCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEA 762
Query: 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
TDL M K + + +YNIL+ G RL +A KV EM + + P +T+ T+IY
Sbjct: 763 TDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEH 822
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C V A++L + M+R V+PD+ F LI G C G L A + +M+
Sbjct: 823 CRSGDVGAAVELWDTMLR-KGVEPDSVAFNLLIYGCCVNGALDKAFELRNDML 874
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVS 153
F RL+E A +V EM+ + +++T++ G + +L+ M K V
Sbjct: 786 GFCKLGRLIE-ATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVE 844
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---------TLVTFGTLIYGLCLE 204
PD+ ++N+L++GC V+ L+ A+++ ++ML R L+P L L++G C+
Sbjct: 845 PDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVT 904
Query: 205 LRVDEALKLKEDMM 218
VD AL+L M+
Sbjct: 905 GEVDTALRLYHSML 918
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L++ ++ + P F +I + A ++FDEM ++ T ++N ++
Sbjct: 485 LYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYC 544
Query: 134 TCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+D+ +L + ++ + PD +Y L+ G + R+ A D++ K+ L+ +
Sbjct: 545 KAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEM 604
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+ L++G C + R+ EAL +M++ + D A LI G
Sbjct: 605 CYSALLHGYCGQGRLTEALSASCEMIQ-RGINMDLVCHAVLIDG 647
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ +Y M+G ++ A +F++ML + P VT+G + L E + EA L
Sbjct: 706 PNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDL 765
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+M++ + + + LI+G C +G L A EM N I
Sbjct: 766 HHEMLK--GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGI 808
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 98/222 (44%), Gaps = 13/222 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARLLEH 105
F +++ Y+++I L + E ++ L+ + + E+++ +C ++ + R + +
Sbjct: 249 FDLSIVTYNVLIHGLCKGGGVLEALEVRKSLRE--KGLKEDVVTYCTLVLGFCRVQQFDD 306
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
+ + +EM T + + L++ + G ID DL + ++ P+ YN L++
Sbjct: 307 GICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALIN 366
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRV 220
L+ A ++ M L VT+ LI C +D A ++ ED +R
Sbjct: 367 ALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIR- 425
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P + SLI G C G+LS A +M+ +E A
Sbjct: 426 ETIYP----YNSLINGHCKFGDLSAAEFLYTKMINEGLEPTA 463
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR--MTDLFQIMEKY- 151
+ G+ RL E AL EM +QR + + + + +A+L G + + M LF +++K
Sbjct: 612 GYCGQGRLTE-ALSASCEM----IQRGI-NMDLVCHAVLIDGAMKQQDMKRLFGLLKKMY 665
Query: 152 ---VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+ PD+ Y ++ + + + D M+ + P +VT+ + GLC +D
Sbjct: 666 DQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEID 725
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
A L E M+ N+ P++ + + L G + A EM++
Sbjct: 726 RAGHLFEKMLTA-NISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKG 772
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 13/236 (5%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L +LL DPK + F E+ F L L+ + L ++FD V
Sbjct: 119 LHTLLLRGSDPKFVFEKF---------LESHKQCKFSSTLGFDFLVHSYLQNTRVFDAV- 168
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++ +L ++PE +++ R R +VFDE + V+ + + ++ +
Sbjct: 169 -VVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRS 227
Query: 132 MLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ R + ME +YN+L+HG + +A +V + ++ L+
Sbjct: 228 LCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKED 287
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+VT+ TL+ G C + D+ + L +M+ + V +A V + L+ GL G + A
Sbjct: 288 VVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAV-SGLVDGLRKKGNIDSA 342
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 10/222 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+Q KP N L Y ++ L R D+ + ++ + ++VP+ + VI +A
Sbjct: 28 SQDCKP---NALSYCYLVKALCRTGKIDKACSTIAEMARE-KLVPDVFTYNVVIDTLCKA 83
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
R + A++ F+ M + V ++NTLL + G++ + LF ME ++P +Y
Sbjct: 84 RRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTY 139
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ + E A+ + M R+ PT+ ++ ++I GLC +VD+A +L E+M +
Sbjct: 140 TTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEM-K 198
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ KPD + +LI GLC L A MV N + D
Sbjct: 199 LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPD 240
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P ++ + +I + + E A + M+S TV S+ +++N + K+D+
Sbjct: 132 ITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAY 191
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ M+ PD +YN L+HG V +RL +A + M++ QP +TF LI GL
Sbjct: 192 QLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGL 251
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C R+ EA L + M + PD L+ LC + +L AL +VRN
Sbjct: 252 CTTDRIKEAFVLFQGMAK-QGCAPDLVTHTVLVSKLCILRKLRPAL----SVVRN 301
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 81/167 (48%), Gaps = 5/167 (2%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E L QL + P +C++I+ + R ++ A Q+F+EM + ++NTL
Sbjct: 153 ETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTL 212
Query: 129 LNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ + ++ DL +M E PD ++ L+ G + R+++A+ +F M K+
Sbjct: 213 IHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGC 272
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
P LVT L+ LC+ ++ AL + +R Y P+A + + I
Sbjct: 273 APDLVTHTVLVSKLCILRKLRPALSV----VRNYPACPEAVILYTPI 315
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 9/185 (4%)
Query: 73 ILHQLKHDTRVV------PEEII-FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
IL +L+ VV PE +I + + GR R + A ++ +M+ V V ++
Sbjct: 288 ILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTY 347
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+ + R F+ ++E+ + PD +YN+L+ G + RL+ A K+ M +
Sbjct: 348 TAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQ 407
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
L P +VT+ TL+ C + +V+ +L M+ +PD +++L+ GL VG+
Sbjct: 408 SGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVS-RGRQPDVATWSTLVAGLFMVGQAD 466
Query: 245 LALGF 249
A F
Sbjct: 467 AAYSF 471
>gi|147767812|emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
Length = 396
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 48/286 (16%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
SLL+ ++DP+ L++ + P + + + + + I+KL +K FD ++
Sbjct: 41 SLLKSEQDPQRILEICRAAALTPES---------HLDRVAFSVAISKLADSKHFDSIRHF 91
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L +LK + E + + I +G+A +L A++ F++M V RTV+S N LL + +
Sbjct: 92 LDELKARPDLRTERFV-SHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCI 150
Query: 134 TCGKIDRMTDLF-------------------------------------QIMEKYVSPDA 156
+F ++ K V P+A
Sbjct: 151 LAKNYKEANRIFLEFPKTYGIELNLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNA 210
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
S+ IL+ G + ED KV M + ++QP + T+ I LC + EA L +
Sbjct: 211 TSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDG 270
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +KP+++ + LI G C G L A ++MV + D+
Sbjct: 271 IL-ARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVNRGCKPDS 315
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+ EM V+ SF LL K + + + ++ME+Y + P +YNI +
Sbjct: 197 ILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLC 256
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ +A + D +L RR++P T+ LI+G C E +DEA KL +DM+ KPD+
Sbjct: 257 KLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVN-RGCKPDS 315
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
+ +L+ LC G+ AL F +E
Sbjct: 316 DCYFTLVYFLCQGGDFESALRFCKE 340
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ ++ + IL ++ V P F +++ + E +V
Sbjct: 174 NLDSYNTVLKAFSESGSSSSGYSILAEMGRKG-VKPNATSFGILLAGFYNEEKYEDVGKV 232
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M + +Q + ++N + ++ K L I+ + + P++ +Y L+HG
Sbjct: 233 LKMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCK 292
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNVKPDA 227
L++A K+F +M+ R +P + TL+Y LC + AL+ KE M + + P+
Sbjct: 293 EGNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWF--PNI 350
Query: 228 QVFASLIKGLCAVGELSLA---LG-FKEEMVRN 256
SL+ GL ++ ++ A +G KE+ RN
Sbjct: 351 STMTSLVNGLVSISKVEEAQELIGQIKEKFSRN 383
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 110/214 (51%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ F ++ + H + D +V F +IS + + +++ A+ V
Sbjct: 403 DLVSYSILLHGYATEGRFADMNNLFHSMA-DKGIVANCHCFNILISAHAKRGMMDEAMLV 461
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
F EM V+ V +++TL++A G++ D M Q++ + P+ Y+ L+HG +
Sbjct: 462 FTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCM 521
Query: 169 SRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
L A ++ EM+ + + +P +V F ++I+ LC E RV +A + ++ + + +P
Sbjct: 522 HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGD-RPTI 580
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F SLI G C VG++ A G + MV IE D
Sbjct: 581 VTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPD 614
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I+ + M DE + +++ V P+ + + +IS + R L A++ F +M
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQG-VRPDVVTYSTLISAFCRMGRLADAMEKFSQM 500
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV-SPDACSYNILMHGCVVSRR 171
S ++ +++L++ G + + +L ++M K + P+ ++ ++H R
Sbjct: 501 ISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGR 560
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+ DA VF+ ++ +PT+VTF +LI G CL ++++A + + M+ V ++PD +
Sbjct: 561 VMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSV-GIEPDVVTYN 619
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+L+ G C G++ L EM+ K++
Sbjct: 620 TLVSGYCKSGKIDDGLILFREMLHKKVK 647
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L +A+ D+ + +L Q+ D V P+ + + +I Y + + + ++
Sbjct: 298 DVVTYNSIVDALCKARAMDKAELVLRQMV-DKGVEPDGLTYTAIIHGYSCSGHWKESAKM 356
Query: 110 FDEMSSFNVQRTVKSFNT-----------------------------------LLNAMLT 134
F +M+S + + +FN+ LL+ T
Sbjct: 357 FRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYAT 416
Query: 135 CGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G+ M +LF M +K + + +NIL+ +++A VF EM + ++P +VT
Sbjct: 417 EGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVT 476
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ TLI C R+ +A++ M+ + ++P+ V+ SLI G C G+L A EM
Sbjct: 477 YSTLISAFCRMGRLADAMEKFSQMISI-GLEPNTVVYHSLIHGFCMHGDLVKAKELVSEM 535
Query: 254 VRNKI 258
+ I
Sbjct: 536 MSKGI 540
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 50 NLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+ +I L G ++ + + + K R P+ + F VI + + + A
Sbjct: 226 NAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACN 285
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILMHGCV 167
+ +EM V+ V ++N++++A+ +D+ L Q+++K V PD +Y ++HG
Sbjct: 286 LINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYS 345
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +++ K+F +M + L P +VTF + + LC R +A ++ + M PD
Sbjct: 346 CSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQ-YMTTKGHMPDL 404
Query: 228 QVFASLIKGLCAVGELS 244
++ L+ G G +
Sbjct: 405 VSYSILLHGYATEGRFA 421
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 5/187 (2%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ K GR+K +E+ Q + H +P+ + + ++ Y +F M+
Sbjct: 379 LCKHGRSKDAEEIFQYMTTKGH----MPDLVSYSILLHGYATEGRFADMNNLFHSMADKG 434
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAW 176
+ FN L++A G +D +F M+ + V PD +Y+ L+ RL DA
Sbjct: 435 IVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAM 494
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+ F +M+ L+P V + +LI+G C+ + +A +L +MM +P+ F+S+I
Sbjct: 495 EKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHS 554
Query: 237 LCAVGEL 243
LC G +
Sbjct: 555 LCNEGRV 561
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 85 PEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P + F ++I S R+++ A VF+ + + T+ +FN+L++ GK+++
Sbjct: 543 PNIVFFSSIIHSLCNEGRVMD-AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKA-- 599
Query: 144 LFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
F +++ VS PD +YN L+ G S +++D +F EML ++++PT VT+ ++
Sbjct: 600 -FGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLD 658
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
GL R A K+ +M+ D + L+KGLC
Sbjct: 659 GLFHAGRTSAAKKMFHEMID-SGTAVDIDTYKILLKGLC 696
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 71 QQILHQLKHDTRVV---------------PEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
I+H L ++ RV+ P + F ++I Y +E A V D M S
Sbjct: 549 SSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVS 608
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
++ V ++NTL++ GKID LF +++ K V P +Y+I++ G + R
Sbjct: 609 VGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSA 668
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A K+F EM+ + T+ L+ GLC DEA+ L + + K D + ++I
Sbjct: 669 AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHK-LGAMDCKFDITILNTVI 727
Query: 235 KGL 237
L
Sbjct: 728 NAL 730
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDAC 157
ARLL L+ RT+++ NT L + + D D L ++ + P+A
Sbjct: 180 ARLLRAGLRT----------RTIEA-NTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAI 228
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
SYN ++ R ++A + M K R P +V+F T+I+G + V +A L
Sbjct: 229 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLIN 288
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+M++ V+PD + S++ LC + A +MV +E D
Sbjct: 289 EMVQ-KGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDG 334
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 95/218 (43%), Gaps = 11/218 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +++ ++ D+ + ++ H +V P + + V+ A A ++
Sbjct: 614 DVVTYNTLVSGYCKSGKIDDGLILFREMLHK-KVKPTTVTYSIVLDGLFHAGRTSAAKKM 672
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F EM + ++ LL + D LF K + D C ++I + V++
Sbjct: 673 FHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFH---KLGAMD-CKFDITILNTVIN 728
Query: 170 -----RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
RR E+A +F + L P + T+G +I+ L E V+EA + M +
Sbjct: 729 ALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEK-SGCA 787
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P +++ +I+ L G++ A + ++ I ++A
Sbjct: 788 PSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEA 825
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y ILM C +RR + F +L+ L+ + T + LC R DEA+ +
Sbjct: 158 TYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLHR 217
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
M P+A + ++IK LC AL + M +
Sbjct: 218 MSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAK 255
>gi|242054089|ref|XP_002456190.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
gi|241928165|gb|EES01310.1| hypothetical protein SORBIDRAFT_03g031900 [Sorghum bicolor]
Length = 731
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 8/227 (3%)
Query: 43 PLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP----EEIIFCNVISF 96
PL P Y N Y ++ A D+V +L ++ + R P + + + V+S
Sbjct: 368 PLLPKAYPPNARVYTTLMKGYMNAGRVDDVVAVLRAMRQEARTAPASRPDHVTYTTVMSA 427
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSP 154
A + A V DEM++ V ++N LL +I + +LF+ + + + P
Sbjct: 428 LVGAGDVARAHAVLDEMAADGVPANRVTYNVLLKGYCQQLQIGKARELFEEMVTDAGIQP 487
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+YN LM GCV+S A F+EM R + P+ V++ TL+ + + A K+
Sbjct: 488 GVVTYNTLMDGCVLSDDSAGALAFFNEMRSRGIAPSTVSYTTLMKAFAVSGQPKVAHKVF 547
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
E+M R V D + L++G C +G++ A E M ++ D
Sbjct: 548 EEMERDPRVTVDRAAWNMLVEGYCRLGQVETAKQVVERMKERGVQPD 594
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ + + +++ ++ D + P + + ++ + AL
Sbjct: 452 NRVTYNVLLKGYCQQLQIGKARELFEEMVTDAGIQPGVVTYNTLMDGCVLSDDSAGALAF 511
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCV 167
F+EM S + + S+ TL+ A G+ +F+ ME+ V+ D ++N+L+ G
Sbjct: 512 FNEMRSRGIAPSTVSYTTLMKAFAVSGQPKVAHKVFEEMERDPRVTVDRAAWNMLVEGYC 571
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
++E A +V + M +R +QP + T+G+L G+ + + EAL L
Sbjct: 572 RLGQVETAKQVVERMKERGVQPDVATYGSLAKGVAMARKPGEALVL 617
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
+L H + E+ S + +FN+ L+A G R LF M ++ + DA +YN
Sbjct: 203 VLRHLRRSPPELVSPSCLPDAAAFNSALSACADAGDCRRFRQLFDAMSEWSAAADALTYN 262
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+++ C + R + +V + ML L P TF +L+
Sbjct: 263 VVIKMCARAGRKDLVARVLERMLSSGLAPCATTFHSLV 300
>gi|359494840|ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Vitis vinifera]
Length = 396
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 48/286 (16%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
SLL+ ++DP+ L++ + P + + + + + I+KL +K FD ++
Sbjct: 41 SLLKSEQDPQRILEICRAAALTPES---------HLDRVAFSVAISKLADSKHFDSIRHF 91
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L +LK + E + + I +G+A +L A++ F++M V RTV+S N LL + +
Sbjct: 92 LDELKARPDLRTERFV-SHAIVLFGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCI 150
Query: 134 TCGKIDRMTDLF-------------------------------------QIMEKYVSPDA 156
+F ++ K V P+A
Sbjct: 151 LAKNYKEANRIFLEFPKTYGIELNLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNA 210
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
S+ IL+ G + ED KV M + ++QP + T+ I LC + EA L +
Sbjct: 211 TSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDG 270
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +KP+++ + LI G C G L A ++MV + D+
Sbjct: 271 IL-ARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVNRGCKPDS 315
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 2/145 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+ EM V+ SF LL K + + + ++ME+Y + P +YNI +
Sbjct: 197 ILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGISTYNIRIQSLC 256
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ +A + D +L RR++P T+ LI+G C E +DEA KL +DM+ KPD+
Sbjct: 257 KLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFKDMVN-RGCKPDS 315
Query: 228 QVFASLIKGLCAVGELSLALGFKEE 252
+ +L+ LC G+ AL F +E
Sbjct: 316 DCYFTLVYFLCQGGDFESALRFCKE 340
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 9/213 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ ++ + IL ++ V P F +++ + E +V
Sbjct: 174 NLDSYNTVLKAFSESGSSSSGYSILAEMGRKG-VKPNATSFGILLAGFYNEEKYEDVGKV 232
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M + +Q + ++N + ++ K L I+ + + P++ +Y L+HG
Sbjct: 233 LKMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCK 292
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNVKPDA 227
L++A K+F +M+ R +P + TL+Y LC + AL+ KE M + + P+
Sbjct: 293 EGNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWF--PNI 350
Query: 228 QVFASLIKGLCAVGELSLA---LG-FKEEMVRN 256
SL+ GL ++ ++ A +G KE+ RN
Sbjct: 351 STMTSLVNGLVSISKVEEARELIGQIKEKFSRN 383
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 115/216 (53%), Gaps = 9/216 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++
Sbjct: 290 KGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPK-YGCTPNSLSYNPILHAFCKQKKMD 348
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ + M S + S+NTLL A+ G++D +L Q+ +K +P SYN ++
Sbjct: 349 RAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 408
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRV 220
G + + ++A ++ +EM+ + LQP ++T+ T+ GLC E R++EA++ +DM
Sbjct: 409 DGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDM--- 465
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++P+ ++ +++ GLC E A+ M+ N
Sbjct: 466 -GIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISN 500
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 104/214 (48%), Gaps = 8/214 (3%)
Query: 43 PLKPFRYNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
P++P Y Y+ +I L GR + + + + L+ VP+ + + ++ +
Sbjct: 151 PMEPDSYT---YNTLIRGLCGRGRTGNALVVLDDMLRRG--CVPDVVTYTILLEATCKRS 205
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
+ A+++ DEM + + ++N ++N + G++D + + + + P+ SYN
Sbjct: 206 GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYN 265
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I++ G + R EDA K+ EM ++ P +VTF LI LC V+ A+++ D +
Sbjct: 266 IVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVL-DQIPK 324
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y P++ + ++ C ++ A+ F E MV
Sbjct: 325 YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMV 358
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
R+ + +E +P C+ L+ S R +A +V +P ++ + ++
Sbjct: 80 RLVESMSGLEPSAAPGPCA--ALIKKLCASGRTAEARRVLAA-----CEPDVMAYNAMVA 132
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
G C+ ++D A +L DM ++PD+ + +LI+GLC G AL ++M+R
Sbjct: 133 GYCVTGQLDAARRLVADM----PMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLR 184
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 5/195 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + K P E+ CN V+ Y R+ +HA ++ DE
Sbjct: 357 YCMLINGLGSEERLDEALKYFELSKASG--FPMEVPTCNAVVGAYCRSSKFQHAFKMVDE 414
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
M + ++++ +L+ ++ KI+ ++FQ M K P +Y +++ + R
Sbjct: 415 MRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNER 474
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A KV+++M ++ + P + F LI GLC E R++EA ++M+ ++P Q+F+
Sbjct: 475 VDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLD-RGIRPPGQLFS 533
Query: 232 SLIKGLCAVGELSLA 246
+L + L G +SLA
Sbjct: 534 NLKEALIEGGRISLA 548
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++I+ ++ DE ++ +++ + +P ++C +I+ G L+ AL+
Sbjct: 318 DVVAYGMLISSFCKSGKCDEAIKVFREMETNG-CMPSPHVYCMLINGLGSEERLDEALKY 376
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F+ + V + N ++ A K + M K + P++ +Y+I++H +
Sbjct: 377 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIK 436
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S+++E+A+ VF M K +P L T+ ++ C RVD ALK+ + M+ V P
Sbjct: 437 SQKIEEAYNVFQGMSKDGCEPQLNTYTMMVGMFCSNERVDVALKV-WNQMKEKGVLPCMH 495
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+F++LI GLC L A + +EM+ I
Sbjct: 496 MFSALINGLCFENRLEEACAYFQEMLDRGI 525
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 15/248 (6%)
Query: 7 TSPFRLASLLR-LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
SP +A +L+ L LAL F+ A+ + F Y + +I LG+ K
Sbjct: 143 VSPQLVAEVLKNLSNAGILALAFFR---------WAERQQGFVYTADSFHNLIEALGKIK 193
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
F V ++ ++ R + + F ++ Y RAR ++ A++ F++M+ F ++ + +
Sbjct: 194 QFRLVWSLVEAMR--CRGLLSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDY 251
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N L++ + ++ + +F+ M++ PD +Y +LM G + L V+ EML
Sbjct: 252 NWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEML 311
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
LQP +V +G LI C + DEA+K+ + M P V+ LI GL + L
Sbjct: 312 DAGLQPDVVAYGMLISSFCKSGKCDEAIKVFRE-METNGCMPSPHVYCMLINGLGSEERL 370
Query: 244 SLALGFKE 251
AL + E
Sbjct: 371 DEALKYFE 378
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y ++ L +K +D+V+++ ++ + +P E+ F +I F+ R ++E A+QV
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMM-EKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+M+ N ++N++ G++D M Y +PD SY ++ G
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R DA ++ EM++ P VTF T I LC + +++A+ L E M +
Sbjct: 365 AERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQE-HGCTVGVV 423
Query: 229 VFASLIKGLCAVGELSLAL 247
+ +L+ G C G + AL
Sbjct: 424 TYNALVNGFCVQGHIDSAL 442
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NN + P + + Y ++ L RA+ +++ +++L ++ + P E+ F I
Sbjct: 341 NNMGSYGCNP---DTISYTTVLKGLCRAERWNDAKELLKEMVRNN-CPPNEVTFNTFICI 396
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ L+E A+ + ++M V ++N L+N G ID +LF+ M P+
Sbjct: 397 LCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP--CKPNT 454
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y L+ G + RL+ A ++ EML R P +VTF L+ C + +DEA++L E
Sbjct: 455 ITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQ 514
Query: 217 MMRVYNVKPDAQVFASLIKGL 237
MM + P+ + +L G+
Sbjct: 515 MME-HGCTPNLITYNTLFDGI 534
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 103/253 (40%), Gaps = 41/253 (16%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y + LI R ++ D + + L+ + P + + ++ +
Sbjct: 135 SMPVAPDAYT--YTPLIRVLCDRGRVADALSLLDDMLRRGCQ--PNVVTYTVLLEAMCKN 190
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
E A+ V DEM + + ++N ++N M G++D DL + Y PD SY
Sbjct: 191 SGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSY 250
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-------------------- 199
L+ G S+R +D ++F EM+++ P VTF LI
Sbjct: 251 TTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTE 310
Query: 200 ---------------GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
+C + RVD+A K +M Y PD + +++KGLC +
Sbjct: 311 HECATNTTLCNIVINSICKQGRVDDAFKFLNNMGS-YGCNPDTISYTTVLKGLCRAERWN 369
Query: 245 LALGFKEEMVRNK 257
A +EMVRN
Sbjct: 370 DAKELLKEMVRNN 382
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 2/173 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +++ A L+ A ++ EM + V +FN L+N G +D +L
Sbjct: 452 PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIEL 511
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q+ME +P+ +YN L G EDA ++ ++ + + P ++TF ++I L
Sbjct: 512 VEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSK 571
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E RV+EA+++ + + ++P A V+ ++ GLC E+ A+ F MV N
Sbjct: 572 EDRVEEAIQMFH-LAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSN 623
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 11/219 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
P+ F YN L + R D ++++ + V P+ + +I
Sbjct: 104 SGSPVDVFAYNTL-----VAGYCRYGHLDAARRLIGSMP----VAPDAYTYTPLIRVLCD 154
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIMEKYVSPDACS 158
+ AL + D+M Q V ++ LL AM G M L ++ K +P+ +
Sbjct: 155 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVT 214
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN++++G R++DA + + + QP V++ TL+ GLC R D+ +L +MM
Sbjct: 215 YNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMM 274
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
N P+ F LI+ C G + A+ ++M ++
Sbjct: 275 E-KNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE 312
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ + + + ++ ++LH L V P+ I F ++I + +E A+Q+
Sbjct: 523 NLITYNTLFDGITKDCSSEDALELLHGLVSKG-VSPDVITFSSIIGILSKEDRVEEAIQM 581
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F ++ +N +L + +ID D M P+ +Y IL+ G
Sbjct: 582 FHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAR 641
Query: 169 SRRLEDAWKVFDEMLKR 185
L++A + + R
Sbjct: 642 EGLLKEAQDLLSMLCSR 658
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 113/221 (51%), Gaps = 3/221 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A + + +++ Y +I L + + + V +++ +++ + E FC ++ Y RA
Sbjct: 46 ASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNAMRNKEILNVEA--FCIIMRKYARA 103
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
+ +E A+ F+ M +N++ V +FN LL+A+ + + ++F M+ PD+ +Y+
Sbjct: 104 QKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYS 163
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ G + L A +++ EM+ P VT+ ++ LC RVDEA+++ ++ M
Sbjct: 164 ILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKE-MDY 222
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
N KP + +++ L+ + A+ EM RN + D
Sbjct: 223 NNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMAD 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L +A DE +I+ ++ ++ P I+ ++ YG +E A+ F EM
Sbjct: 197 YSIMVDVLCKAGRVDEAVEIVKEMDYNN-CKPSSFIYSVLVHTYGVENRIEDAVSTFLEM 255
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHGCVVS 169
V V ++N L++A K ++M +++++++ K V+P++ + NI+++ +
Sbjct: 256 ERNGVMADVAAYNALISAFC---KANKMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGR 312
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++A+K+F M+K +P + ++ +I C +D ALK+ + M + V P
Sbjct: 313 GETDEAFKIFRRMIKV-CEPDVDSYTMIIKMFCGRKELDMALKIWKYMKKKQFV-PSMHT 370
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKI 258
F+ LI GLC +G + A EEM+ I
Sbjct: 371 FSVLINGLCQIGNATQACVLLEEMIEKGI 399
>gi|414872445|tpg|DAA51002.1| TPA: hypothetical protein ZEAMMB73_961198 [Zea mays]
Length = 765
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHG 165
VF+EMS + V+ +N ++A ++D LF M+ V PD C+YN ++
Sbjct: 211 VFEEMSRRGLPSNVRLYNICIHAFGKWRQLDMSLGLFAAMKAATPPVEPDICTYNSVIRA 270
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
VV R+ DA ++DEM ++P + T+ ++ G C R+D+AL++ +M + V
Sbjct: 271 LVVGGRVPDALVIYDEMKSSGIEPDVFTYRAVMNGCCKSFRMDDALRVFHEMRGIIGVS- 329
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D V+ SL+ GL V +L A F E MV + I+ A
Sbjct: 330 DVVVYNSLLDGLFKVKKLDEACSFFETMVADGIQCSA 366
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNI 161
L A ++F+ ++ + T ++N+L+ + + G + ++ + + P D +YN+
Sbjct: 589 LSVACKLFEIFTNLGNKGTSYTYNSLMTSFVKKGYLKQVWAVLHERGGQLCPNDVATYNL 648
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + + + A + D + K+ + +V + TLI L +V+EA L E ++R
Sbjct: 649 IIQGLGLMGKADVARTIIDRLSKKGVYMDIVMYNTLISQLGKVGKVEEAGCLFEQIIR-S 707
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+KPD F +LI G L A + M+R I
Sbjct: 708 GMKPDVVTFNTLISINAKAGRLKEAGKYLRRMIREGI 744
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 81/176 (46%), Gaps = 5/176 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P ++ Y+ +I L + I ++K + + P+ + V++ ++ ++
Sbjct: 256 PVEPDICTYNSVIRALVVGGRVPDALVIYDEMK-SSGIEPDVFTYRAVMNGCCKSFRMDD 314
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
AL+VF EM V +N+LL+ + K+D F+ M + A ++N ++
Sbjct: 315 ALRVFHEMRGIIGVSDVVVYNSLLDGLFKVKKLDEACSFFETMVADGIQCSASTHNTVID 374
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDM 217
G + R E A ++F E+ ++ + + ++ C E +V EA++L ++M
Sbjct: 375 GLFNNGRAEAACRLFYELRRKGQLLDGIAYSIMVREFCKEGIGDQVAEAVELVKEM 430
>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 376
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 3/212 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + + Y +++ + D+ +L + V+ + + +I+ + L+ A
Sbjct: 90 FVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVL-DAFAYSAMINGLCKEANLDRA 148
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
+ V + M + +NTL+N ++ K + +F+ M + SP+ +YN L++G
Sbjct: 149 VSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNTLING 208
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +A+ + E+L + L P ++T+ L+ GLCL+ +V++AL+L + + KP
Sbjct: 209 LCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQL-WNQVTSKGFKP 267
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
D Q+ LI GLC+VG++ LAL +M R K
Sbjct: 268 DVQMHNVLIHGLCSVGKMQLALSLYFDMNRWK 299
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 87/168 (51%), Gaps = 2/168 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L + +MF E ++ +L D + P I + ++ +E ALQ+
Sbjct: 198 NIITYNTLINGLCKNEMFGEAYNLVKELL-DKGLNPGVITYSMLMKGLCLDHKVEKALQL 256
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+++++S + V+ N L++ + + GK+ L+ M ++ +P+ S+N LM G
Sbjct: 257 WNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYK 316
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ +A ++ +L+ L+P ++++ + GLC R+ +A+ D
Sbjct: 317 DGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHD 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 77/160 (48%), Gaps = 1/160 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ E+ V +N +LN KI +L+++M + S+NI+
Sbjct: 6 IDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNRSVSSFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + ++++ +++ M K +T+G L++G C +D++L + E M
Sbjct: 66 MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
DA ++++I GLC L A+ M+++ + +A
Sbjct: 125 GVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNA 164
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L A F++ ++ ++ P I + +I+ + + A + E+
Sbjct: 167 YNTLINGLVGASKFEDAIRVFREMG-TMHCSPNIITYNTLINGLCKNEMFGEAYNLVKEL 225
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V +++ L+ + K+++ L+ Q+ K PD +N+L+HG ++
Sbjct: 226 LDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKM 285
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++ +M + + P LV+ TL+ G + + AL + ++R ++PD +
Sbjct: 286 QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILR-NGLEPDIISYNI 344
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
+KGLC+ +S A+ F + V KI
Sbjct: 345 TLKGLCSCNRISDAILFLHDAVTKKI 370
>gi|296089005|emb|CBI38708.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPN-PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
P +L+ ++R QK+P AL++F PN +R+N Y +I LG +
Sbjct: 11 PTQLSQMIRTQKNPLTALKIFNEAKSKFPN---------YRHNGPVYATMINVLGSSGRI 61
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
E+++++ Q+K D+ ++ +F +V+ Y RA +++ A+ +F + FN SFNT
Sbjct: 62 AEMREVIDQMKQDS-CECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNT 120
Query: 128 LLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL ++ K++ LF V S N+LM R + A VF EM +
Sbjct: 121 LLRILVKESKLETACRLFLEHSCGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQ 180
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP---DAQVFASLIKGLCAVGE 242
P ++ L+ GLC + R++EA L M + K D + +L+ LC G
Sbjct: 181 CCSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGH 240
Query: 243 LSLAL 247
+ AL
Sbjct: 241 VEEAL 245
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI--MEKYVSPDAC- 157
R + A QV DEM + ++ + + A+ R F + +EK C
Sbjct: 310 RKIGEANQVLDEMRDRGFKPSLSIYEAKIAALC------RWKSAFAVGYLEKMARQVGCV 363
Query: 158 ----SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+Y+IL+ G R +A + + ML R P + T+ TLI GLCL R +A+
Sbjct: 364 ADKETYSILVDGLCCDGRFVEASGILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIW 423
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCA 239
E+M+ V P V+ SL+ +C+
Sbjct: 424 LEEMV-VQGKLPAVSVWDSLVASVCS 448
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P SY+ + R++ +A +V DEM R +P+L + I LC + A+
Sbjct: 294 PSMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALC-RWKSAFAVGY 352
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E M R D + ++ L+ GLC G A G E M+
Sbjct: 353 LEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILERML 393
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +C+++ Y + + A +F+ M+ V V+S+N ++N K+D +L
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K + PD +YN L+ G S ++ A K+ DEM R + +T+ +++ LC
Sbjct: 359 FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 418
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+VD+A+ L M+ ++PD + LI GLC G L A E+++
Sbjct: 419 NHQVDKAIALLTK-MKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLL 468
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 8/195 (4%)
Query: 69 EVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
++ Q LH HD V ++ + +I+ + ALQ+ + VQ V
Sbjct: 141 QIHQALHF--HDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVM 198
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+NT++++M ++ DL+ +++ K +SPD +Y+ L+ G + +L DA +F++M+
Sbjct: 199 YNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMI 258
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ P + TF L+ G C E RV EA + MM+ +KPD + SL+ G C V ++
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMK-QGIKPDVVTYCSLMDGYCLVKQV 317
Query: 244 SLALGFKEEMVRNKI 258
+ A M + +
Sbjct: 318 NKAKSIFNTMAQGGV 332
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 5/218 (2%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
NT AQ N+ Y+++I + K DE + ++ H ++P+ + + ++I
Sbjct: 325 NTMAQ--GGVTANVQSYNIMINGFCKIKKVDEAMNLFKEM-HCKNIIPDVVTYNSLIDGL 381
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDA 156
++ + +AL++ DEM V ++N++L+A+ ++D+ L M ++ + PD
Sbjct: 382 CKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDM 441
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y IL+ G RL+DA +F+++L + T+ T+ +I G C D+AL L
Sbjct: 442 YTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSK 501
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M P+A+ + +I L E +A EM+
Sbjct: 502 -MEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMI 538
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ AL D++ + + TL+N + G+ L + ++ K V P+ YN
Sbjct: 142 IHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ + + +A+ ++ EM+ + + P +VT+ LI G C+ ++++A+ L M+
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMIS-E 260
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD F+ L+ G C G + A M++ I+ D
Sbjct: 261 EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDV 301
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 109/248 (43%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II + + K+ +E + ++ + P+ + + +IS + L A+ +
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMV-SKGISPDVVTYSALISGFCILGKLNDAIGL 253
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC----------- 157
F++M S + V +F+ L++ G++ ++ +M K + PD
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313
Query: 158 ------------------------SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
SYNI+++G +++++A +F EM + + P +VT
Sbjct: 314 VKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVT 373
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +LI GLC ++ ALKL D M V D + S++ LC ++ A+ +M
Sbjct: 374 YNSLIDGLCKSGKISYALKL-VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432
Query: 254 VRNKIEMD 261
I+ D
Sbjct: 433 KDEGIQPD 440
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 104 EHAL-QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
EH+L F+ + + N + F +L +++ L + ME ++ D ++NI
Sbjct: 37 EHSLVSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNI 96
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ ++ VF +LK+ +P +T TLI GLCL+ ++ +AL D +
Sbjct: 97 LINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHF-HDKVVAL 155
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ + +LI GLC VG+ S AL
Sbjct: 156 GFHLNKVCYGTLINGLCKVGQTSAAL 181
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
A+ + EM + + +FN L+N G +F I++K P+A + L+
Sbjct: 75 AISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIK 134
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC--------LEL--RVDEAL--- 211
G + ++ A D+++ V +GTLI GLC L+L RVD L
Sbjct: 135 GLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 194
Query: 212 ---------------KLKEDMMRVYN------VKPDAQVFASLIKGLCAVGELSLALGFK 250
KL + +Y+ + PD +++LI G C +G+L+ A+G
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254
Query: 251 EEMVRNKIEMDA 262
+M+ +I D
Sbjct: 255 NKMISEEINPDV 266
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 11/257 (4%)
Query: 3 KAKPTSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K P +P + S+L RL ALQ F + + + + ++ +DL I
Sbjct: 50 KTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH--------REYVHDASSFDLAIDIA 101
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + V ++H+++ R+ P F V Y A + A+++F M +
Sbjct: 102 ARLHLHPTVWSLIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQD 160
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ SFNT+L+ + ++++ +LF+ + S D +YN++++G + +R A +V E
Sbjct: 161 LASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKE 220
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++R + P L T+ T++ G ++ A + +M + + + D + +++ G G
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGFGVAG 279
Query: 242 ELSLALGFKEEMVRNKI 258
E+ A +EM+R +
Sbjct: 280 EIKRARNVFDEMIREGV 296
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ I+ L ++K ++ ++ L+ R + + + +++ + + AL+V
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEV 217
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + + ++NT+L G+I + F M+K D +Y ++HG V
Sbjct: 218 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 277
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A VFDEM++ + P++ T+ +I LC + V+ A+ + E+M+R +P+
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR-RGYEPNVT 336
Query: 229 VFASLIKGLCAVGELS 244
+ LI+GL GE S
Sbjct: 337 TYNVLIRGLFHAGEFS 352
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 72 QILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
Q H L H V + F I R L + M S + + K+F +
Sbjct: 75 QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 134
Query: 131 AMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ GK D+ LF M ++ D S+N ++ S+R+E A+++F L+ R
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 193
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
VT+ ++ G CL R +AL++ ++M+ + P+ + +++KG G++ A F
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVE-RGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 250 KEEMVRNKIEMD 261
EM + E+D
Sbjct: 253 FLEMKKRDCEID 264
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ G A + + ++ + V+P + +I + +E+A+ +
Sbjct: 264 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + V ++N L+ + G+ R +L Q ME + P+ +YN+++
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+E A +F++M P L T+ LI G+ + R ++
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 423
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 1/145 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
L+ A+ V M + +N L+N + K + T +F+ M + SP+ +YN L
Sbjct: 145 LDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREMGTHCSPNIVTYNTL 204
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G R +A+ + EML++ +P + T+ L+ GLCL ++D A+ L ++
Sbjct: 205 INGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAINLWNQVI-AKG 263
Query: 223 VKPDAQVFASLIKGLCAVGELSLAL 247
KPD Q+ LI GLC+VG+ LAL
Sbjct: 264 FKPDVQMHNILIHGLCSVGKTQLAL 288
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 102/209 (48%), Gaps = 4/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + DE +L + + P ++ +I+ + A E A +VF EM
Sbjct: 132 YSAMINGLCKEAKLDEAVSVLSGMVKNG-CKPNTHVYNALINGFVGASKFEDATRVFREM 190
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + + ++NTL+N + + DL +++EK P +Y++LM G + +L
Sbjct: 191 GT-HCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKL 249
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++++++ + +P + LI+GLC + AL L + M +N P+ + +
Sbjct: 250 DMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFN-MNXWNCAPNLVTYNT 308
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L++G G+L AL ++RN ++ D
Sbjct: 309 LMEGFYKDGDLRNALAIWAHILRNGLQPD 337
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 94/206 (45%), Gaps = 4/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I A F++ ++ ++ T P + + +I+ + A + EM
Sbjct: 167 YNALINGFVGASKFEDATRVFREM--GTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEM 224
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V +++ L+ + K+D +L+ Q++ K PD +NIL+HG +
Sbjct: 225 LEKGWKPGVSTYSLLMKGLCLGHKLDMAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKT 284
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++ M P LVT+ TL+ G + + AL + ++R ++PD +
Sbjct: 285 QLALSLYFNMNXWNCAPNLVTYNTLMEGFYKDGDLRNALAIWAHILR-NGLQPDIISYNI 343
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
+KGLC+ +S A+ F + V K+
Sbjct: 344 TLKGLCSCNRISGAILFLHDAVTKKL 369
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 1/153 (0%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
+ A +V++EM+ V +N +LN G+I +L+++M + S + S+NI+M
Sbjct: 7 DGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKGSRNVASFNIMM 66
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + ++ +++ M++ +T+G L+ GLC +++L + E V
Sbjct: 67 RGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKGGV 126
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
DA ++++I GLC +L A+ MV+N
Sbjct: 127 -LDAFSYSAMINGLCKEAKLDEAVSVLSGMVKN 158
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 108/265 (40%), Gaps = 75/265 (28%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
D +++ +++ + +V P+ +++ +++ Y R +++ ++++ M R V SFN
Sbjct: 7 DGAERVYNEMA-ENKVSPDAVVYNAMLNGYFRVGRIKNCFELWELMGR-KGSRNVASFNI 64
Query: 128 LLNAMLTCGKIDRMTDLFQIM---------------------EKYVSP------------ 154
++ + G++D++ ++++M Y +
Sbjct: 65 MMRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVLEIAEGKG 124
Query: 155 ---DACSYN-----------------------------------ILMHGCVVSRRLEDAW 176
DA SY+ L++G V + + EDA
Sbjct: 125 GVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDAT 184
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
+VF EM P +VT+ TLI GLC R EA L ++M+ KP ++ L+KG
Sbjct: 185 RVFREM-GTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLE-KGWKPGVSTYSLLMKG 242
Query: 237 LCAVGELSLALGFKEEMVRNKIEMD 261
LC +L +A+ +++ + D
Sbjct: 243 LCLGHKLDMAINLWNQVIAKGFKPD 267
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 79/168 (47%), Gaps = 2/168 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L + + F E ++ ++ + P + ++ L+ A+ +
Sbjct: 197 NIVTYNTLINGLCKGERFGEAYDLVKEML-EKGWKPGVSTYSLLMKGLCLGHKLDMAINL 255
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
++++ + + V+ N L++ + + GK L+ M + +P+ +YN LM G
Sbjct: 256 WNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYNTLMEGFYK 315
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
L +A ++ +L+ LQP ++++ + GLC R+ A+ D
Sbjct: 316 DGDLRNALAIWAHILRNGLQPDIISYNITLKGLCSCNRISGAILFLHD 363
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
AL ++ M+ +N + ++NTL+ G + ++ I+ + PD SYNI +
Sbjct: 287 ALSLYFNMNXWNCAPNLVTYNTLMEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITLK 346
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G R+ A + + ++L PT++T
Sbjct: 347 GLCSCNRISGAILFLHDAVTKKLVPTIIT 375
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
D LAL L + + + + ++ Y II L R D + ++ +
Sbjct: 185 DTSLALDLLRKMDE----------RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM--E 232
Query: 81 TRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
T+ + ++ N ++ +A +Q+ +M+S + V +FN L++ + GK+
Sbjct: 233 TKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQ 292
Query: 140 RMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L+ +++ K +SP+ +YN LM G + RL +A + D M++ P +VTF +LI
Sbjct: 293 EANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLI 352
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
G C RVDE +KL + + + + ++ L++G C G+L +A +EMV
Sbjct: 353 KGYCKVKRVDEGMKLFRKISK-RGLVANTVTYSILVQGFCQSGKLEIAEELFQEMV 407
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 115/218 (52%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +L+ Y+ ++ L +A +++ Q+L + +++P I F +I + + L+
Sbjct: 234 KGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVFVKEGKLQ 292
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A +++ EM + + ++N+L++ ++ ++ +M + SPD ++ L+
Sbjct: 293 EANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLI 352
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G +R+++ K+F ++ KR L VT+ L+ G C +++ A +L ++M+ + V
Sbjct: 353 KGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSL-GV 411
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + L+ GLC G+L AL E++ ++K+ +D
Sbjct: 412 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLD 449
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 102/193 (52%), Gaps = 5/193 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGRARLLEHALQ 108
N++ Y+ I+ G K D + K D R V ++ + +I R ++ A+
Sbjct: 169 NVVTYNSIVN--GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+F EM + ++ ++ ++N+L+ + GK + L + M + + P+ ++N+L+ V
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+L++A +++ EM+ + + P +T+ +L+ G C++ R+ EA + + M+R N PD
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVR-NNCSPDI 345
Query: 228 QVFASLIKGLCAV 240
F SLIKG C V
Sbjct: 346 VTFTSLIKGYCKV 358
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 86/163 (52%), Gaps = 2/163 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + F ++I Y + + ++ +++F ++S + +++ L+ GK++ +L
Sbjct: 343 PDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEEL 402
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
FQ M V PD +Y IL+ G + +LE A ++F+++ K ++ +V + +I G+C
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+V++A L + VKP+ + +I GLC G LS A
Sbjct: 463 GGKVEDAWNLFCS-LPCKGVKPNVMTYTVMISGLCKKGSLSEA 504
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 101/198 (51%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I + E ++ ++ + P I + +++ Y L A +
Sbjct: 274 NVITFNVLIDVFVKEGKLQEANELYKEMITKG-ISPNTITYNSLMDGYCMQNRLSEANNM 332
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M N + +F +L+ ++D LF +I ++ + + +Y+IL+ G
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +LE A ++F EM+ + P ++T+G L+ GLC ++++AL++ ED+ + + D
Sbjct: 393 SGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMNLDIV 451
Query: 229 VFASLIKGLCAVGELSLA 246
++ +I+G+C G++ A
Sbjct: 452 MYTIIIEGMCKGGKVEDA 469
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F S + L +M + + + N ++N C K
Sbjct: 59 SRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCF 118
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD ++N L++G + ++ +A + M++ QP +VT+ +++
Sbjct: 119 AYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVN 178
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G+C AL L M NVK D ++++I LC G + A+ +EM
Sbjct: 179 GICKSGDTSLALDLLRKMDE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 231
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
+ A+ +F EM ++ F+ + + + + + + D + ME ++ + + NI+
Sbjct: 47 DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIM 106
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + A+ V +++K +P TF TLI GLCLE +V EA+ L M+
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVE-NG 165
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P+ + S++ G+C G+ SLAL +M ++ D
Sbjct: 166 CQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKAD 204
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I+ + A+ + M Q V ++N+++N + G DL
Sbjct: 133 PDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDL 192
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M E+ V D +Y+ ++ ++ A +F EM + ++ +LVT+ +L+ GLC
Sbjct: 193 LRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCK 252
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ ++ ++L +DM + P+ F LI G+L A +EM+ I
Sbjct: 253 AGKWNDGVQLLKDMTS-RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGIS 307
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 37/204 (18%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + +I + K DE ++ ++ +V + + ++ + ++ LE A ++
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISK-RGLVANTVTYSILVQGFCQSGKLEIAEEL 402
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM S V V ++ LL+ + GK+++ ++F+ ++K ++ D Y I++ G
Sbjct: 403 FQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCK 462
Query: 169 SRRLEDAWKVF------------------------------DEMLKRRLQ-----PTLVT 193
++EDAW +F +L R+++ P T
Sbjct: 463 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCT 522
Query: 194 FGTLIYGLCLELRVDEALKLKEDM 217
+ TLI + + + KL E+M
Sbjct: 523 YNTLIRAHLRDGDLTASAKLIEEM 546
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N++ Y ++ A ++ + + + D +VP + +F +++ Y + ++
Sbjct: 345 KGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDG-IVPNQHVFNILVNGYAKCGMVR 403
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+ +F++M + V ++ +++A G +D D F +++K V P+ Y L+
Sbjct: 404 EAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLI 463
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L A ++ E+ + L P +++F +LI LC E RV EA ++ + ++R
Sbjct: 464 QGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRT-GE 522
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K D +F SLI G C +G++S A + MV IE D
Sbjct: 523 KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPD 560
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 43/246 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-------------------------KHDTR-- 82
N++ Y+ +I L +A+ D+ Q IL Q+ K R
Sbjct: 245 NVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMF 304
Query: 83 -------VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
V+P + ++F + +E A + FD M + + + S++TLL+ T
Sbjct: 305 KEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATA 364
Query: 136 GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
G + M++LF +M + + P+ +NIL++G + +A +F++M KR L P ++T+
Sbjct: 365 GCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTY 424
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+I+ C +D+A+ K + M V+P+ V+ LI+G C G+L A EE+V
Sbjct: 425 LAVIHAFCRMGSMDDAMD-KFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKA----EELV 479
Query: 255 ---RNK 257
RNK
Sbjct: 480 YEIRNK 485
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-Q 146
+++ V+ + + A +F EM+ V V ++N++++A+ +D+ + Q
Sbjct: 212 VVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQ 271
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++ V PD +YN L+HG + + A ++F EM R + P VT T + LC R
Sbjct: 272 MVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGR 331
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++EA + + M+ K + +++L+ G G L MVR+ I
Sbjct: 332 IEEAREFFDSML-AKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGI 382
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QI 147
IF ++I Y + A +V D M S ++ + ++ TL+N G+ID LF ++
Sbjct: 528 IFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFREL 587
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ K V P +Y I++ G + R A ++F EM++ + T+ T+ L+ GLC
Sbjct: 588 LHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCT 647
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIK 235
+EA+ + + + + NVK D + +I
Sbjct: 648 EEAITVFQKLCAM-NVKFDIVILNIMIS 674
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 7/214 (3%)
Query: 50 NLLHYDLIITKLGR-AKMFDEVQQILHQLKHDTRVVPEEIIF-CNVISFYGRARLLEHAL 107
++L Y +I R M D + + H + D V P ++ C + F L++ A
Sbjct: 420 DVLTYLAVIHAFCRMGSMDDAMDKFNHMI--DKGVEPNFAVYQCLIQGFCTHGDLVK-AE 476
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
++ E+ + + + SF +L+N + G++ +F I+ D + L+ G
Sbjct: 477 ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGY 536
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ +A++V D M+ ++P +VT+GTL+ G C R+D+ L L +++ VKP
Sbjct: 537 CLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLH-KGVKPT 595
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
+ ++ GL G + A +EM+ + I +
Sbjct: 596 TFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAV 629
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PD 155
R+ E A ++FD + + V F +L++ GK M++ F++ + VS PD
Sbjct: 505 GRVFE-AQRIFDMIIRTGEKADVNIFTSLIDGYCLIGK---MSEAFRVHDAMVSVGIEPD 560
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L++GC + R++D +F E+L + ++PT T+G ++ GL R A ++ +
Sbjct: 561 IVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQ 620
Query: 216 DMMRVYNVKPDAQVFASLIKGLC 238
+M+ + ++ L+ GLC
Sbjct: 621 EMIE-SGIAVTIPTYSILLTGLC 642
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 98/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L + E + H++ V P + + +VI +AR ++ A +
Sbjct: 210 NVVVYSTVVHGLFKEGKVGEACDLFHEMTQQG-VPPNVVTYNSVIHALCKARAVDKAQGI 268
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+M VQ ++NTL++ T G+ + +F+ M + V P+ + + +
Sbjct: 269 LRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCK 328
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+E+A + FD ML + + ++++ TL++G + + L M+R + P+
Sbjct: 329 HGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVR-DGIVPNQH 387
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
VF L+ G G + A+ E+M + + D
Sbjct: 388 VFNILVNGYAKCGMVREAMFIFEDMQKRGLNPD 420
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P +Y+IL+ C +RRL+ A+ F +L++ ++ ++ +L+ GLC R DEA+ +
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
M PDA +++++K +C G AL
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWAL 194
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
R E A+ VF ++ + NV+ + N +++ M + + LF + Y + P
Sbjct: 643 RNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQ 702
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+Y I+M + +E+A VF MLK L PT
Sbjct: 703 TYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPT 735
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ + D+ + +L H V P + ++ A A ++
Sbjct: 560 DIVTYGTLVNGCCKNGRIDDGLILFRELLHKG-VKPTTFTYGIILDGLFHAGRTAAAKEM 618
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F EM + T+ +++ LL + + +FQ + V D NI++
Sbjct: 619 FQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+RR E+A +F + L PT+ T+ ++ L E V+EA + M++ + P +
Sbjct: 679 ARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLK-SGLSPTSH 737
Query: 229 VFASLIKGLCAVGEL 243
+++ L GE+
Sbjct: 738 FINVIVRTLLEKGEI 752
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 36/245 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F V ++ +++ + +F ++ + AR+++ A
Sbjct: 151 YRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKA 210
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------- 145
++V DEM + + F LL+A+ G + LF
Sbjct: 211 IEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGW 270
Query: 146 --------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
QI E PD YN L+ G + ++ DA+ + EM ++ +P +
Sbjct: 271 CREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNV 330
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
++F TLI LC + +++EA+++ +M DA + +LI G C G++S +
Sbjct: 331 MSFTTLIQALCAKKKMEEAMRVFFEMQSC-GCPADAVTYTTLISGFCKWGKISKGYELLD 389
Query: 252 EMVRN 256
M++
Sbjct: 390 NMIQQ 394
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 10/217 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F L H+ ++ R E + +L Q++ + P+ +++ N+++ Y A + A
Sbjct: 256 FTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR-EAGFEPDIVVYNNLLTGYAAAGKMVDA 314
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHG 165
+ EM + V SF TL+ A+ K++ +F M+ P DA +Y L+ G
Sbjct: 315 YDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISG 374
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ +++ D M+++ P +T+ ++ + ++E ++L E+M ++ P
Sbjct: 375 FCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKI-GCTP 433
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D ++ +I+ C +GE+ +E VR EM+A
Sbjct: 434 DLNIYNIVIRLACKLGEI-------KEGVRVWNEMEA 463
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + ++++ + + LE +++ +EM + +N ++ G+I
Sbjct: 397 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 456
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
++ ME +SP ++ I++HG + R L +A + F EM+ R L + +GTL L
Sbjct: 457 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL-SAPQYGTLKELLN 515
Query: 203 LELRVDEALKLKEDMMRVYNVKP-DAQVFASLI 234
LR E L++ +D+ K D V+A I
Sbjct: 516 SLLRA-EKLEMSKDVWSCIMTKGCDLNVYAWTI 547
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 37/208 (17%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ ++T A + +L +++ P + F +I + +E A
Sbjct: 291 FEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK-ECEPNVMSFTTLIQALCAKKKMEEA 349
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------- 145
++VF EM S ++ TL++ GKI + +L
Sbjct: 350 MRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAA 409
Query: 146 -----------QIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
++ME+ +PD YNI++ +++ +V++EM L P
Sbjct: 410 HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPG 469
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMM 218
L TF +I+G + + EA + ++M+
Sbjct: 470 LDTFVIMIHGFLSQRCLVEACEFFKEMV 497
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 110/202 (54%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + DE + ++ +++ + + P+ I + +I+ Y R + A + DEM
Sbjct: 364 YNSLIHALFMEQRTDEAECMIKEIQ-EKGISPDAITYNILINGYCRCANAKKAFLLHDEM 422
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ T K++ +LL+ + ++ DLF+ I + V PDA +N L+ G + +
Sbjct: 423 LASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNV 482
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+++ +M + ++ P VTF T++ G C E +V+EA +L ++M R +KPD F +
Sbjct: 483 KGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKR-RGIKPDHISFNT 541
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
LI G G++ A + EM+
Sbjct: 542 LISGYSRRGDIKDAFRVRNEML 563
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ + + +E +I ++ + P +I+ +I + L+ A DEM
Sbjct: 294 YGSLISGMCKQGRLEEASKIFEEMVQKG-LRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ T+ ++N+L++A+ + D + +I EK +SPDA +YNIL++G
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+ + DEML ++PT T+ +L++ L + R+ EA L + + V PDA +F +
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITS-EGVLPDAIMFNA 471
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G C+ + A ++M R K+ D
Sbjct: 472 LIDGHCSNSNVKGAFELLKDMDRMKVPPD 500
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 104/201 (51%), Gaps = 11/201 (5%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+P K +LLH +++K R K D++ ++I + V+P+ I+F +I +
Sbjct: 428 KPTKKTYTSLLH---VLSKKNRMKEADDLFKKITSE-----GVLPDAIMFNALIDGHCSN 479
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
++ A ++ +M V +FNT++ GK++ +LF M++ + PD S+
Sbjct: 480 SNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF 539
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ G ++DA++V +EML PT++T+ L+ GLC D A +L ++M+
Sbjct: 540 NTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVS 599
Query: 220 VYNVKPDAQVFASLIKGLCAV 240
+ PD + +LI+G+ V
Sbjct: 600 -KGMTPDDTTYFTLIEGIAKV 619
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P + + ++ Y + +E A + M ++ ++ +L++ M G+++
Sbjct: 250 SGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEE 309
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ +F+ M +K + P A YN L+ G L+ A DEMLK+ + PT+ T+ +LI+
Sbjct: 310 ASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIH 369
Query: 200 GLCLELRVDEA-LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
L +E R DEA +KE ++ + PDA + LI G C A +EM+ + I
Sbjct: 370 ALFMEQRTDEAECMIKE--IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGI 427
Query: 259 E 259
+
Sbjct: 428 K 428
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
I NV+ G+ L+ A M + V+ + ++NT+++ + G+++ + M
Sbjct: 226 IMINVLCKEGK---LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTM 282
Query: 149 EKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
++ + PD+ +Y L+ G RLE+A K+F+EM+++ L+P+ V + TLI G C + +
Sbjct: 283 KRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
D A K++M++ + P + SLI L
Sbjct: 343 DMASAYKDEMLK-KGISPTMSTYNSLIHAL 371
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ A + F M V T+++ N+LL+ L + + L+ M + + ++NI+
Sbjct: 168 DEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIM 227
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ +L+ A M ++P +VT+ T+++G C RV+ A + M R
Sbjct: 228 INVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR-QK 286
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++PD+ + SLI G+C G L A EEMV+ + A
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSA 326
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 120/292 (41%), Gaps = 41/292 (14%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTE--AQPLKPF------RYNLLHY------ 54
P R+ L L+ P ++ L + P +P +T A PL P R + H+
Sbjct: 3 PCRIPKLSSLKLKPFSSISLQQTPLESPVSTTNLASPLTPHFLEQSARSSQWHFIKQVES 62
Query: 55 ----DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-------RLL 103
LI L + + Q +L L H + + C I R LL
Sbjct: 63 SLTPSLISQTL--LNLHESPQVVLDFLNHFHHKLSDARTLCLAIVIVARLPSPKPALHLL 120
Query: 104 EHAL---------QVFDEMSSFNVQRTVKS---FNTLLNAMLTCGKIDRMTDLFQIM-EK 150
AL ++F+ +++ + KS F+ L+ + + D + F M EK
Sbjct: 121 RQALGGGTTNSIREIFEFLAASRDRLGFKSSIVFDYLIKSCCDMNRADEAFECFYTMKEK 180
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
V P + N L+ + R E AW ++ EM + R++ ++ TF +I LC E ++ +A
Sbjct: 181 GVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKA 240
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K M VKP+ + +++ G C+ G + A M R KIE D+
Sbjct: 241 -KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDS 291
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L + + + +L +K ++P + ++ Y + L+ A V + M
Sbjct: 246 YNTILDTLCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ N+ V ++N L+N + G+I+ L ME + PD SYN L++GC+ ++
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+K+ +EM ++ ++P VT ++ C E ++D+A M PD + +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES-GFSPDCVTYNT 423
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI G C G + A +EM R ++MD+
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDS 453
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ I+ L R K +E ++L + + +E+ + +I Y + ++ AL+++DEM
Sbjct: 457 NTILRTLCREKKLEEAYKLLSSARKRGYFI-DEVSYGTLIVGYFKDGNVDRALKLWDEMK 515
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + ++N ++ + CGK ++ ++ L +++E + PD +YN ++HG +E
Sbjct: 516 EKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVE 575
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A++ ++M++ +P + T L+ GLC+E +++ALKL + D + +L
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKA-IDTVTYNTL 634
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
I LC G L A EM ++ D
Sbjct: 635 ITSLCKEGRLDDAFNLLSEMEEKELGPD 662
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L +E ++ +++ + +++P+ + + +I+ + A ++ +EM
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEME-NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM 374
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S V+ + N ++ GK+D ++ ME+ SPD +YN L++G + +
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFA 231
+A++ DEM ++ ++ VT T++ LC E +++EA K L R Y + D +
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSYG 492
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+LI G G + AL +EM +I
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEI 519
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
N + Y + + + + F++ + V +FN ++ K + +M KY
Sbjct: 178 NSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKY 237
Query: 152 -VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
SPD +YN ++ RL DA + +M R L P T+ L+YG C + EA
Sbjct: 238 NCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEA 297
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ E +M N+ PD + LI GLC G + A ++EM
Sbjct: 298 ANVIE-LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML---TCGKIDRM 141
P + + I Y ++ HA Q+F +M ++ + + NTLLN+++ + +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+ F K + P+ ++NI+++G + + +DA + + M K P VT+ T++
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDT 252
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC + R+ +A L D M+ + P+ + L+ G C +G L A E M +N +
Sbjct: 253 LCKKGRLGDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 3/174 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II L + ++ L++L ++ ++P+E + ++ Y R +E A Q ++M
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNEL-LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + N LL + G +++ LF + K + D +YN L+ RL
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+DA+ + EM ++ L P T+ +I L R+ EA + M+ N+ PD
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNL-PD 697
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYN 160
+LE AL++F+ S ++NTL+ ++ G++D +L ME K + PD +YN
Sbjct: 608 VLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYN 667
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ S R+ +A + +ML++ P V
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGNLPDQV 699
>gi|48525335|gb|AAT44969.1| At2g36240 [Arabidopsis thaliana]
gi|50198948|gb|AAT70477.1| At2g36240 [Arabidopsis thaliana]
Length = 379
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Query: 84 VPE-EIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRM 141
PE E IF + I Y RAR +++AL FD M + + V +NT++N + G +D+
Sbjct: 35 CPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKA 94
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+Q M K PD C++NIL++G S + + A +F EM ++ +P +V+F TLI G
Sbjct: 95 LRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRG 154
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+++E +K+ +M+ + + L+ GLC G + A G +++ ++
Sbjct: 155 FLSSGKIEEGVKMAYEMIEL-GCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRV 211
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 11/226 (4%)
Query: 31 NPNPNPNNTEAQP-LKP-FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88
NP P + + P L+P FR + Y RA+ D +K P
Sbjct: 24 NPCPCSSGIFSCPELEPIFRSAIDAY-------CRARKMDYALLAFDTMKRLIDGKPNVG 76
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
++ V++ Y ++ ++ AL+ + M + V +FN L+N K D DLF+ M
Sbjct: 77 VYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREM 136
Query: 149 -EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
EK P+ S+N L+ G + S ++E+ K+ EM++ + + T L+ GLC E RV
Sbjct: 137 KEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRV 196
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
D+A L D++ V P + SL++ LC + A+ EE+
Sbjct: 197 DDACGLVLDLLN-KRVLPSEFDYGSLVEKLCGENKAVRAMEMMEEL 241
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 74 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 132
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
F EM + V SFNTL+ L+ GKI+ + ++++E + IL+ G
Sbjct: 133 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 192
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + ++L +R+ P+ +G+L+ LC E + A+++ E++ + P
Sbjct: 193 EGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQT-PCFI 251
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L++GL G A GF E+M+ I D+
Sbjct: 252 ACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDS 285
>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 369
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ + + ++ Q+L ++ V + + +I+ + LE A+ V + M
Sbjct: 97 YGTLVNGFCKNRYINKSLQVL-EIAEQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGM 155
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRL 172
+ +N L+ ++ K+D +F M SP D +YNIL++G R
Sbjct: 156 IKSGCKPNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYNILINGLFKGDRF 215
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+ + EML++ L P+++T+ L+ GLCL +V+ AL+L + + KPD Q+
Sbjct: 216 GEAYDLVKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWNQVTK-KGFKPDVQMHNI 274
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
LI GLC+VG+ LAL +M R
Sbjct: 275 LIHGLCSVGKTQLALSLYLDMNR 297
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 92/178 (51%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ +I A L+ A++VF EM + + + ++N L+N + + DL
Sbjct: 162 PNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYNILINGLFKGDRFGEAYDL 221
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++EK + P +Y++LM G + ++E A ++++++ K+ +P + LI+GLC
Sbjct: 222 VKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCS 281
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ AL L DM R +N P+ +L++G G + AL ++RN+++ D
Sbjct: 282 VGKTQLALSLYLDMNR-WNCAPNLVTQNTLMQGFYKDGNIRNALVIWARILRNELQPD 338
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 98/210 (46%), Gaps = 5/210 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
N Y+ +I L A D+ ++ H++ T P +I+ N+ I+ + A
Sbjct: 163 NTCVYNALIKGLVGASKLDDAIRVFHEM--GTTHSPPDIVTYNILINGLFKGDRFGEAYD 220
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ EM + +V +++ L+ + K++ L+ Q+ +K PD +NIL+HG
Sbjct: 221 LVKEMLEKGLDPSVITYSLLMKGLCLGDKVEMALQLWNQVTKKGFKPDVQMHNILIHGLC 280
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + A ++ +M + P LVT TL+ G + + AL + ++R ++PD
Sbjct: 281 SVGKTQLALSLYLDMNRWNCAPNLVTQNTLMQGFYKDGNIRNALVIWARILR-NELQPDI 339
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +KGLC+ +S A+ F + V K
Sbjct: 340 ISYNITLKGLCSCNRISDAILFLHDAVSKK 369
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+V P+ +++ +++ + RA +E +++ EM +R+V SFNT++ + GK++
Sbjct: 20 KVSPDAVVYNAMLNGFYRAGRIEDCFELW-EMMGREGRRSVASFNTMIRVLFDNGKVEEA 78
Query: 142 TDLFQIMEK---------------------YVSP---------------DACSYNILMHG 165
+ ++M K Y++ DA +Y+ +++
Sbjct: 79 MSIRELMAKSGFVEDSKTYGTLVNGFCKNRYINKSLQVLEIAEQKGGVLDAFAYSAMINA 138
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+LE A V + M+K +P + LI GL ++D+A+++ +M ++ P
Sbjct: 139 LCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHS-PP 197
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D + LI GL A +EM+ ++
Sbjct: 198 DIVTYNILINGLFKGDRFGEAYDLVKEMLEKGLD 231
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V++++ V +N +LN G+I+ +L+++M + S+N +
Sbjct: 6 IDGAERVYEDIVERKVSPDAVVYNAMLNGFYRAGRIEDCFELWEMMGREGRRSVASFNTM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + ++E+A + + M K T+GTL+ G C ++++L++ E +
Sbjct: 66 IRVLFDNGKVEEAMSIRELMAKSGFVEDSKTYGTLVNGFCKNRYINKSLQVLEIAEQKGG 125
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V DA ++++I LC +L A+ M+++
Sbjct: 126 V-LDAFAYSAMINALCKEAKLEKAVCVLNGMIKS 158
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 107/199 (53%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y L+I L + + + ++ ++ + + P I++ ++I+ R L A+ +
Sbjct: 78 NFFTYGLVIDSLCKDGLAIKGLKMFREMI-NMGICPNVIVYSSLINGLCRVGKLREAVNL 136
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEM S ++ V ++N+L++A G T F Q++ + + PD ++ L+
Sbjct: 137 FDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSK 196
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++A+K+F+ M+K+ P +VT+ +L+ GLCL ++D A++L E M+ +K D
Sbjct: 197 KGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVE-RGIKIDVI 255
Query: 229 VFASLIKGLCAVGELSLAL 247
+ +LI G C G+ A+
Sbjct: 256 SYNTLINGYCTSGKTEEAM 274
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N++ Y+ +I R ++ E + Q+ + ++P+ + F +I + ++
Sbjct: 143 QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG-ILPDVVTFTTLIDHLSKKGKVQ 201
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A ++F+ M + ++N+LLN + ++D LF++M E+ + D SYN L+
Sbjct: 202 EAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G S + E+A +F +M L P++ T+ L+ L R+ A +L + M++
Sbjct: 262 NGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNN-MQICGQ 320
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
P + L+ GLC G + A+
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAI 344
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD--TRVVPEEIIFCNVISFYGRARL 102
+ + +++ Y+ +I + +E + +++++ T + I + GR R
Sbjct: 248 RGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRT 307
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYN 160
A ++F+ M ++ ++ LL+ + G I+ D+F+ ++ KY P Y+
Sbjct: 308 ---AKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKY-KPSIRIYS 363
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ G +RR E A ++FDE+ L P +VT+ +I GLC E ++ EA +L M
Sbjct: 364 ILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEES 423
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ D F +I+G ++ A+ F + M
Sbjct: 424 -GCEQDEISFNFIIRGFLQENQVQKAMEFLKRM 455
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 11/179 (6%)
Query: 75 HQLKHDTR---VVPEEIIFCNVISF------YGRARLLEHALQVFDEMSSFNVQRTVKSF 125
HQ+ H R V+ E I +VIS+ Y + E A+ +F +M + ++ ++
Sbjct: 233 HQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTY 292
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
LL A+ G+I +LF M+ SP +Y +L+ G + +E+A VF +
Sbjct: 293 TILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKS 352
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +P++ + LI G+ R + A+++ +++ V + P+ + +I GLC G+L
Sbjct: 353 IKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTV-GLVPNIVTYNIMINGLCKEGKL 410
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
AL++FD+M+ Q + + L+NA+ + R +L + M + CS N +G
Sbjct: 28 ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRM----LSEICSGNFFTYG 83
Query: 166 CVVSRRLED-----AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
V+ +D K+F EM+ + P ++ + +LI GLC ++ EA+ L ++M+
Sbjct: 84 LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVS- 142
Query: 221 YNVKPDAQVFASLIKGLCAVG 241
+K + + SLI C G
Sbjct: 143 QGIKANVITYNSLIHASCRFG 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 2/145 (1%)
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWK 177
Q + + +TL+ M GK+ +LF M + D Y L++ +R+ A +
Sbjct: 6 QPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ ML T+G +I LC + + LK+ +M+ + + P+ V++SLI GL
Sbjct: 66 LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINM-GICPNVIVYSSLINGL 124
Query: 238 CAVGELSLALGFKEEMVRNKIEMDA 262
C VG+L A+ +EMV I+ +
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANV 149
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M PD +Y++L++
Sbjct: 157 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLIN 216
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++ A ++FDEML + L P VTF TLI G C RVD A+++ + M+ ++
Sbjct: 217 GLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 275
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A +EM ++ D
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPD 312
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I+ + ++ A ++FDEM + +F TL++ G++D ++
Sbjct: 206 PDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEI 265
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ Q++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI G C
Sbjct: 266 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCK 325
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
E +D A ++ M++ N++ D + +LI GLC G A EM+ + DA
Sbjct: 326 EGDLDTAFXHRKRMIQE-NIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDA 383
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 60 KLGRAKMFDEV-QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV 118
K GR + E+ +Q+L Q ++P+ I + +I + L+ A + DEMS
Sbjct: 255 KNGRVDLAMEIYKQMLSQ-----SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSX--- 306
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
K + PD +Y L+ GC L+ A+
Sbjct: 307 -------------------------------KGLKPDKFTYTTLIDGCCKEGDLDTAFXH 335
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
M++ ++ V + LI GLC E R +A K+ +M+ V + PDA + +I C
Sbjct: 336 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV-GLXPDAGTYTMIINEFC 394
Query: 239 AVGEL 243
G++
Sbjct: 395 KKGDV 399
>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
Length = 975
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 114/255 (44%), Gaps = 51/255 (20%)
Query: 47 FRYNLLHYDLIITKLGRAKM--FDEVQQILH--QLKHDTRVVPEEIIFCNVISFYGRARL 102
F YN L Y + K +A + E+Q H +K+ T +V + + F GR
Sbjct: 511 FTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQ-------LCFSGR--- 560
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+ A+Q D M + +++ +N M G++D LF+ I KY PD ++NI
Sbjct: 561 VTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNI 620
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRL---------------------------------- 187
L++G S +L++A K+ +EML++ L
Sbjct: 621 LINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEE 680
Query: 188 -QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
QPT++T+ +LI G C R DEA+KL + MR P+ + + I GL G + A
Sbjct: 681 KQPTVITYTSLIDGFCSAGRPDEAIKLWCE-MREKGCAPNNIAYTAFINGLRKCGRIETA 739
Query: 247 LGFKEEMVRNKIEMD 261
L + EEMV E+D
Sbjct: 740 LTYFEEMVTKGFELD 754
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 13/210 (6%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHALQ 108
+L ++ +I +L +E I +Q+K D + P E + ++ FYG R + + AL
Sbjct: 475 ILMFNDLIHELCNMDRLEEGYGIFNQMK-DLGLTPSEFTYNSL--FYGICRRKYPKAALD 531
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMH 164
+ EM + +K+ ++ + G R+T+ Q ++ + PD +Y+ M+
Sbjct: 532 LLREMQTNGHPPWIKNCTEMVQQLCFSG---RVTEAVQFLDGMLQIGFLPDIVTYSAAMN 588
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + ++DA +F ++ + P +V LI G ++DEA K+ E+M+ +
Sbjct: 589 GMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLE-KGLF 647
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P + +I C G + A+ + ++MV
Sbjct: 648 PSVVTYNLMIDVCCKTGRIEKAISYLDKMV 677
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 10/208 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK---HDTRVVPEEIIFCNVISFYGRARLLEHA 106
N Y+ ++ L +A D+ Q L ++ D V ++ +++ Y A + A
Sbjct: 173 NSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSV--DKYTLTSLLRCYCNAGRPDDA 230
Query: 107 LQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMH 164
VF MS V V TL+ A GK+D +L ME + + ++L+H
Sbjct: 231 NDVFQRMSELGWVDEHV--LTTLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVH 288
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R++ A +F +M+ L + LI GLC + + A+KL ++ M+ V
Sbjct: 289 GFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKE-MKSSGVA 347
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEE 252
PD ++ +I+ C G+ ++ F E
Sbjct: 348 PDVRLLKKVIEAFCREGDFAVIGPFINE 375
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 3/203 (1%)
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG A + D + + P + ++ +A + A EM +
Sbjct: 148 LGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDG 207
Query: 121 TVKSFN--TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
+V + +LL G+ D D+FQ M + D LM +++ A ++
Sbjct: 208 SVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWGKVDGAVEL 267
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
M ++ + T L++G + RVD+A+ + M+ Y D +++ LI+GLC
Sbjct: 268 LGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS-YGFVVDLAMYSVLIEGLC 326
Query: 239 AVGELSLALGFKEEMVRNKIEMD 261
+++ A+ +EM + + D
Sbjct: 327 QQKDIARAVKLFKEMKSSGVAPD 349
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 18/208 (8%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y ++I L + K ++ ++K + V P+ + VI + R
Sbjct: 311 FVVDLAMYSVLIEGLCQQKDIARAVKLFKEMK-SSGVAPDVRLLKKVIEAFCREGDFAVI 369
Query: 107 LQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
+E + + V +N +L ++ CG+++ +Q++ V N + G
Sbjct: 370 GPFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAA---YQLLRSMVCGGQAVNNDVAGG 426
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ EDA +P +F ++ GLC ++D AL L +DM+ + K
Sbjct: 427 AHMLHIREDA------------KPNSDSFNIVVCGLCKVKKLDMALALTKDMISL-GCKG 473
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+F LI LC + L G +M
Sbjct: 474 KILMFNDLIHELCNMDRLEEGYGIFNQM 501
>gi|356544625|ref|XP_003540749.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800,
mitochondrial-like [Glycine max]
Length = 438
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 17/217 (7%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN-- 117
KLG AKM+ E+ I++QL ++ E +F VI ++ +AR L A+ VF M S
Sbjct: 145 KLGAAKMYQEMDDIVNQLL-AVPLIGSEALFNMVIYYFTQARKLTRAVNVFKHMKSRRNL 203
Query: 118 ---VQRTVKSFNTLLNAMLTCGKIDRMTDLF---------QIMEKYVSPDACSYNILMHG 165
+ +++++N L A L G + ++ Q+++ + PD S N ++ G
Sbjct: 204 NCFFRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVKDGIKPDIFSLNSMIKG 263
Query: 166 CVVSRRLEDAWKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
V+S + DA ++F +M + P +T+ LI+GLC + R + A +L + M+
Sbjct: 264 YVLSLHVNDALRIFHQMGVIYDCPPNALTYDCLIHGLCAQGRTNNAKELYSE-MKTKGFV 322
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P ++ + SL+ L GE+ A+ + EM + D
Sbjct: 323 PSSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSAD 359
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ +IF +I R E A + EM V + N+L+ + GKID++ +
Sbjct: 108 PDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKI 167
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +M K + PD SY+I ++G ++++A ++FDEM R + P VT+ TLI LC
Sbjct: 168 FHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQ 227
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LR +A L M + PD +++L+ G C G L L +EM R ++ D
Sbjct: 228 ALRPRDAQVLFRKMCAC-GLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPD 284
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 6/223 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP Y+ Y + I + + DE ++ ++ H VVP + + +I +A
Sbjct: 173 SKGLKPDVYS---YSIFINGYCKVEKIDEAMELFDEMSHRG-VVPNAVTYNTLIKALCQA 228
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSY 159
A +F +M + + + +++TLL+ G +D M LFQ M++ V PD Y
Sbjct: 229 LRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVY 288
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
I+++G SR+++DA +V ++ L+P + T+ L+ GLC E + EAL+L M
Sbjct: 289 TIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEE 348
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
P + + L++G + S + EM DA
Sbjct: 349 -DGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADA 390
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + +++ Y ++ ++F M S ++ V S++ +N KID +
Sbjct: 142 VPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAME 201
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
LF M + V P+A +YN L+ + R DA +F +M L P ++ + TL+ G C
Sbjct: 202 LFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFC 261
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+ +DE L L ++M R VKPD V+ +I G+C
Sbjct: 262 KQGNLDEMLVLFQEMQRRL-VKPDLVVYTIIINGMC 296
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ AL F+ M N Q + FN LL++++ K + + LF+ ME + + + C+ +I
Sbjct: 21 LDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ ++ + VF + LKR +P +V F TLI G+C + + A L ++M V
Sbjct: 81 LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140
Query: 222 NVKPDAQVFASLIKGLCAVGEL 243
V PD SL++G C+ G++
Sbjct: 141 CV-PDVVTCNSLMRGYCSQGKI 161
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D + +++++ P +N L+ V ++ E +F EM R ++ + T LI
Sbjct: 23 DALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILI 82
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C VD + ++ KPD +F +LI G+C +G+ LA G +EM
Sbjct: 83 NCFCFLHHVDYGFSVFGKTLK-RGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM 136
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L Y ++ + DE+ + +++ V P+ +++ +I+ R+R ++ A +V
Sbjct: 249 DILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL-VKPDLVVYTIIINGMCRSRKVKDAKEV 307
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+ ++ V ++ L++ + G I LF+ ME+ P +CSYN+L+ GC+
Sbjct: 308 LSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQ 367
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVT 193
++ EM R VT
Sbjct: 368 HNDTSTVVQLIHEMADRGFYADAVT 392
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 266 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 324
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG--- 165
F EM ++ V + + L+ ++ GKI D+F M K +PD SYNI+++G
Sbjct: 325 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 384
Query: 166 --CVVSRR------------------------------LEDAWKVFDEMLKRRLQPTLVT 193
C+V L+ A +F+EM ++P +VT
Sbjct: 385 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 444
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I LC ++D+A++ K + M V PD + LI+G C G L A E+
Sbjct: 445 YRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 503
Query: 254 VRNKIEMD 261
+ N + +D
Sbjct: 504 MNNGMHLD 511
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP +++ Y +I L R D+ + +Q+ D V P++ + C +
Sbjct: 431 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQG 486
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + + + F++++N + G++ ++F + + + P
Sbjct: 487 FCTHGSLLK-AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 545
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
DA Y++LM G + ++E A +VFD M+ ++P +V + TL+ G C R+DE L L
Sbjct: 546 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 605
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP +++ +I GL G A EM + I MD
Sbjct: 606 REMLQ-RGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD 651
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
P+LAL F Q L+ R N++ + ++ AK DE IL +
Sbjct: 140 PELALAFF-----------GQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 188
Query: 81 TRVVPEEI---IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
VP+ I + G++ + L++ E + V ++NT+++ G
Sbjct: 189 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGD 247
Query: 138 IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+++ DLF +++++ + PD +YN ++H +R ++ A +M+ +R+ P T+
Sbjct: 248 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 307
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LIYG + EA+++ ++M R +++ PD + L+ LC G++ A
Sbjct: 308 LIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSMLMGSLCKYGKIKEA 356
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 49/236 (20%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 506 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYSMLMDGYCLVG 561
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM------------- 148
+E AL+VFD M S ++ V + TL+N G+ID LF+ M
Sbjct: 562 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 621
Query: 149 -----------------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
E ++ D C+YNI++ G +R ++A +F E+
Sbjct: 622 IIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 681
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ ++T T+I G+ RV+EA L + R V P+ ++ +I L G
Sbjct: 682 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV-PNVVTYSIMITNLIKEG 736
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
++ Y +++ L + +L + V P + + VI + + + A
Sbjct: 194 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 253
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCV 167
+F EM + + ++N++++A+ +D+ L Q++ K V P+ +YN L++G
Sbjct: 254 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 313
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + ++A +VF EM + + P +VT L+ LC ++ EA + D M + PD
Sbjct: 314 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF-DTMAMKGQNPDV 372
Query: 228 QVFASLIKGLCAVGEL 243
+ ++ G G L
Sbjct: 373 FSYNIMLNGYATKGCL 388
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ +SP + +Y ILM C + R E A F ++L+ L+ ++ L+ G C R DE
Sbjct: 118 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 177
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
AL + PD ++ L+K LC G+
Sbjct: 178 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK 210
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDA 156
RA E AL F ++ ++ + N LL + D D L + E PD
Sbjct: 136 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 195
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLK 214
SY+IL+ + A + M + P +V + T+I G E V++A L
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++M++ + PD + S++ LC + A F +MV ++
Sbjct: 256 KEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 100/192 (52%), Gaps = 3/192 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R N Y ++I A DE +++ ++K D + P +F +++ Y +
Sbjct: 197 LRPNERTYGIVINGYIAAGQIDESLRLIERMKMDG-ISPTIAVFNHLVKGYSESMKPHKV 255
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
+VF M +F V+ V++F ++NA + G ID + M++Y + PD +Y+IL+ G
Sbjct: 256 DKVFKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKG 315
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R E+ + M+ L+P ++T+ T+I G C ++D+A+++ ++ MR +V P
Sbjct: 316 YSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQE-MRSRSVFP 374
Query: 226 DAQVFASLIKGL 237
+ Q F +LI G
Sbjct: 375 NMQTFRTLIWGF 386
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 8/192 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I G +E ++L ++ D P + F +I + + E A V M
Sbjct: 98 YNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEKARNVISMM 157
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V V S+NTL GK D + ++ Y+ P+ +Y I+++G + + ++
Sbjct: 158 RAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVINGYIAAGQI 217
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDMMRVYNVKPDAQV 229
+++ ++ + M + PT+ F L+ G + +VD+ KL E+ + VKPD Q
Sbjct: 218 DESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMEN----FGVKPDVQT 273
Query: 230 FASLIKGLCAVG 241
F ++ C+ G
Sbjct: 274 FGLIMNAWCSTG 285
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P E + VI+ Y A ++ +L++ + M + T+ FN L+ K ++ +
Sbjct: 199 PNERTYGIVINGYIAAGQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKV 258
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++ME + V PD ++ ++M+ + +++A V M + LQP ++ + L+ G
Sbjct: 259 FKLMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSR 318
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ R +E ++M N+KP+ + ++I G C++ ++ A+ +EM
Sbjct: 319 QGRPEEGEAFL-NIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEM 367
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 4/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y L+++ L E +L Q++ D V+P+ I F +++ Y A ++ A + EM
Sbjct: 28 YTLLLSSLISDGRLGEGPLLLQQMEEDN-VIPDAIFFNTLLNGYCEAGKMKEAEALVLEM 86
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRR 171
S+NTL+ G+ + L Q M K V+ P+ ++N+L+ +
Sbjct: 87 KERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKN 146
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
E A V M + P +V++ TL + +A + +M VY ++P+ + +
Sbjct: 147 PEKARNVISMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVY-LRPNERTYG 205
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+I G A G++ +L E M + I
Sbjct: 206 IVINGYIAAGQIDESLRLIERMKMDGI 232
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+++ LL+++++ G++ L Q ME+ V PDA +N L++G + ++++A + E
Sbjct: 26 ETYTLLLSSLISDGRLGEGPLLLQQMEEDNVIPDAIFFNTLLNGYCEAGKMKEAEALVLE 85
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
M +R ++ TLI G L+ + +EA+KL ++M + N KP+ + F LIK
Sbjct: 86 MKERGCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWA 142
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ I+ L + + + +L +K ++P + ++ Y + L+ A V + M
Sbjct: 246 YNTILDALCKKGRLGDARDLLMDMK-SRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ N+ V ++N L+N + G+I+ L ME + PD SYN L++GC+ ++
Sbjct: 305 TQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKI 364
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+K+ +EM ++ ++P VT ++ C E ++D+A M PD + +
Sbjct: 365 SEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEES-GFSPDCVTYNT 423
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI G C G + A +EM R ++MD+
Sbjct: 424 LINGYCKAGNMGEAFRTMDEMGRKNMKMDS 453
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+ I+ L R K +E ++L + + +E+ + +I Y + ++ AL+++DEM
Sbjct: 457 NTILRTLCREKKLEEAYKLLSSARKRGYFI-DEVSYGTLIVGYFKDGNVDRALKLWDEMK 515
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + ++N ++ + CGK ++ ++ L +++E + PD +YN ++HG +E
Sbjct: 516 EKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVE 575
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A++ ++M++ +P + T L+ GLC+E +++ALKL + D + +L
Sbjct: 576 KAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKA-IDTVTYNTL 634
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
I LC G L A EM ++ D
Sbjct: 635 ITSLCKEGRLDDAFNLLSEMEEKELGPD 662
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 103/207 (49%), Gaps = 5/207 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L +E ++ +++ + +++P+ + + +I+ + A ++ +EM
Sbjct: 316 YNMLINGLCNEGRIEEAFKLRDEME-NLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEM 374
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S V+ + N ++ GK+D ++ ME+ SPD +YN L++G + +
Sbjct: 375 SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNM 434
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFA 231
+A++ DEM ++ ++ VT T++ LC E +++EA K L R Y + D +
Sbjct: 435 GEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFI--DEVSYG 492
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKI 258
+LI G G + AL +EM +I
Sbjct: 493 TLIVGYFKDGNVDRALKLWDEMKEKEI 519
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151
N + Y + + + + F++ + V +FN ++ K + +M KY
Sbjct: 178 NSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKY 237
Query: 152 -VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
SPD +YN ++ RL DA + +M R L P T+ L+YG C + EA
Sbjct: 238 NCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEA 297
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ E +M N+ PD + LI GLC G + A ++EM
Sbjct: 298 ANVIE-LMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEM 339
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 5/178 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML---TCGKIDRM 141
P + + I Y ++ HA Q+F +M ++ + + NTLLN+++ + +
Sbjct: 133 PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFS 192
Query: 142 TDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+ F K + P+ ++NI+++G + + +DA + + M K P VT+ T++
Sbjct: 193 REAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDA 252
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC + R+ +A L D M+ + P+ + L+ G C +G L A E M +N +
Sbjct: 253 LCKKGRLGDARDLLMD-MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II L + ++ L++L ++ ++P+E + ++ Y R +E A Q ++M
Sbjct: 526 YNCIIGGLCQCGKTEQAISKLNEL-LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + N LL + G +++ LF + K + D +YN L+ RL
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+DA+ + EM ++ L P T+ +I L R+ EA + M+
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKML 690
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYN 160
+LE AL++F+ S ++NTL+ ++ G++D +L ME K + PD +YN
Sbjct: 608 MLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYN 667
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ S R+ +A + +ML++ P V
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGXLPXQV 699
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P + F +++ R + L ++ +M SF + + N L+N+ ++ +
Sbjct: 8 PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L I++ P ++ L+ G V ++ +A ++FD+M QP ++T+GTLI GLC
Sbjct: 68 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ EAL L DM+ + P+ ++SLI GLC +G A+ M+ KI D
Sbjct: 128 DRQLTEALSLFSDML-AKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPD 184
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMH 164
ALQ+FD+M+ Q V ++ TL+N + ++ LF ++ K +SP+ +Y+ L+H
Sbjct: 99 ALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIH 158
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDMMRVY 221
G + ++A ++F M+ R++ P +TF TL+ LC E + D+A+ L E+M +
Sbjct: 159 GLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQ-Q 217
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ PD + +LI GLC VG L A+ EMV
Sbjct: 218 GLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV 250
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F+ ++L Y +I L + + E + + + P + ++I +
Sbjct: 109 EGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKG-ISPNNFTYSSLIHGLCILGHWK 167
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIM-EKYVSPDACSYN 160
A+++F M + +FNTL++A+ G I D+ LF+ M ++ + PD +YN
Sbjct: 168 EAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYN 227
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+HG RL DA +F EM+ P LVT+ L LC R+ EA+ L + ++
Sbjct: 228 TLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLK-VIEG 286
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA 246
N+ PD +++ ++ G+C GEL A
Sbjct: 287 TNLDPDIHIYSIVMDGMCRAGELEAA 312
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 24/251 (9%)
Query: 18 LQKDPKL--ALQLFKN---PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72
L KD +L AL LF + +PNN F Y+ L + L I LG K E +
Sbjct: 125 LCKDRQLTEALSLFSDMLAKGISPNN--------FTYSSLIHGLCI--LGHWK---EAIR 171
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFY---GRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
+ + + H +++P+++ F ++ G ++++ A+ +F+EMS + ++NTL+
Sbjct: 172 LFYAMIH-RKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI 230
Query: 130 NAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ + G++ LF M Y PD +Y IL + RL +A + + L
Sbjct: 231 HGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLD 290
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P + + ++ G+C ++ A L + + PD + + +I GLC G L+ A
Sbjct: 291 PDIHIYSIVMDGMCRAGELEAARDLFSKL-SSKGLHPDVRTYTIMINGLCQQGLLAEASK 349
Query: 249 FKEEMVRNKIE 259
EM N IE
Sbjct: 350 LFGEMDENDIE 360
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 125/251 (49%), Gaps = 14/251 (5%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S+L + + + +Q FK N F+++ Y +I L A+++ E+ +
Sbjct: 98 SILEIDVEINVKIQFFKWAGKRRN---------FQHDCSTYMTLIRCLEEARLYGEMYRT 148
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ ++ +T V + ++ GRA+++ AL VF + + T ++N+++ ++
Sbjct: 149 IQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLM 208
Query: 134 TCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G+ +++ +++ M E PD +Y+ L+ R + A ++FDEM +QPT
Sbjct: 209 QEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTE 268
Query: 192 VTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+ TL+ G+ ++ +V++AL L E+M R P + LIKGL G + A GF
Sbjct: 269 KIYTTLL-GIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 251 EEMVRNKIEMD 261
++M+R+ + D
Sbjct: 327 KDMLRDGLTPD 337
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + ++V ++ ++ ++ P+ I + +IS Y + + A+++FDEM
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+Q T K + TLL GK+++ DLF+ M++ SP +Y L+ G + R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A+ + +ML+ L P +V L+ L RV+E + + M ++ P + +
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSE-MGMWRCTPTVVSYNT 378
Query: 233 LIKGL 237
+IK L
Sbjct: 379 VIKAL 383
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+A DE + D + P+ + N+++ G+ +E VF EM
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDG-LTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 114 SSFNVQRTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
+ TV S+NT++ A+ + ++ F M+ VSP +Y+IL+ G + R
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + +EM ++ P + +LI L R + A +L +++ + ++V+A
Sbjct: 425 VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG-NVSSRVYA 483
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
+IK G+LS A+ EM
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEM 505
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK ++ ++ +LK + V + + +I +G+ L A+ +F+EM
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ V ++N L++ M+ G I+ L + ME+ D S+NI+++G +
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++F+ + ++P VT+ TL+ +EA ++ + M+ + DA ++S
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE-MKDKGFEYDAITYSS 624
Query: 233 LIKGLCAV 240
++ + V
Sbjct: 625 ILDAVGNV 632
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 53/232 (22%)
Query: 50 NLLHYDLIIT---KLGR----AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
+ + Y +I+ KLGR ++FDE++ D + P E I+ ++ Y +
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK--------DNCMQPTEKIYTTLLGIYFKVGK 283
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+E AL +F+EM TV ++ L+ + G++D ++ ++ ++PD N
Sbjct: 284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNN 343
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT------------------------- 196
LM+ R+E+ VF EM R PT+V++ T
Sbjct: 344 LMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 197 -----------LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
LI G C RV++AL L E+M P + SLI L
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDE-KGFPPCPAAYCSLINAL 454
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 111/211 (52%), Gaps = 9/211 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I+ L R + + ++L Q+ P + + ++ + + + ++ A+
Sbjct: 85 NVVTFNMLISFLCRRGLVEPAMEVLEQIPK-YGCTPNSLSYNPLLHAFCKQKKMDKAMAF 143
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ M S + S+NTLL A+ G++D DL Q+ K SP SYN ++ G
Sbjct: 144 VELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTK 203
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKP 225
+ + ++A ++ DEM+ + LQP ++T+ T+ GLC E +++EA++ +DM ++P
Sbjct: 204 AGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDM----GIRP 259
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
++ +++ GLC E A+ M+ N
Sbjct: 260 TVVLYNAILLGLCKRRETHNAIDLFSYMISN 290
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%)
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHG 165
+++ DEM + ++N +LN + G++D + + + Y P+ SYNI++ G
Sbjct: 1 MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA K+ +EM + P +VTF LI LC V+ A+++ E + + Y P
Sbjct: 61 LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPK-YGCTP 119
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
++ + L+ C ++ A+ F E MV
Sbjct: 120 NSLSYNPLLHAFCKQKKMDKAMAFVELMV 148
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y++++ + + D+ + L L P + + V+ A E A ++
Sbjct: 15 DIITYNVVLNGICQEGRVDDAMEFLENLPSYGGE-PNTVSYNIVLKGLFTAERWEDAEKL 73
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+EM+ V +FN L++ + G ++ ++ + + KY +P++ SYN L+H
Sbjct: 74 MEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCK 133
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++++ A + M+ R P +V++ TL+ LC VD A+ L ++ P
Sbjct: 134 QKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ-LKGKGCSPVLI 192
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I GL G+ AL +EM+ ++ D
Sbjct: 193 SYNTVIDGLTKAGKTKEALELLDEMISKGLQPD 225
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 125/251 (49%), Gaps = 14/251 (5%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S+L + + + +Q FK N F+++ Y +I L A+++ E+ +
Sbjct: 98 SILEIDVEINVKIQFFKWAGKRRN---------FQHDCSTYMTLIRCLEEARLYGEMYRT 148
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ ++ +T V + ++ GRA+++ AL VF + + T ++N+++ ++
Sbjct: 149 IQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLM 208
Query: 134 TCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G+ +++ +++ M E PD +Y+ L+ R + A ++FDEM +QPT
Sbjct: 209 QEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTE 268
Query: 192 VTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+ TL+ G+ ++ +V++AL L E+M R P + LIKGL G + A GF
Sbjct: 269 KIYTTLL-GIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 251 EEMVRNKIEMD 261
++M+R+ + D
Sbjct: 327 KDMLRDGLTPD 337
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + ++V ++ ++ ++ P+ I + +IS Y + + A+++FDEM
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+Q T K + TLL GK+++ DLF+ M++ SP +Y L+ G + R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A+ + +ML+ L P +V L+ L RV+E + + M ++ P + +
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSE-MGMWRCTPTVVSYNT 378
Query: 233 LIKGL 237
+IK L
Sbjct: 379 VIKAL 383
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 12/206 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+A DE + D + P+ + N+++ G+ +E VF EM
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDG-LTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 114 SSFNVQRTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
+ TV S+NT++ A+ + ++ F M+ VSP +Y+IL+ G + R
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR---VDEALK-LKEDMMRVYNVKPDA 227
+E A + +EM ++ P + +LI L R DE K LKE+ V +
Sbjct: 425 VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFGNV-----SS 479
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+V+A +IK G+LS A+ EM
Sbjct: 480 RVYAVMIKHFGKCGKLSEAVDLFNEM 505
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK ++ ++ +LK + V + + +I +G+ L A+ +F+EM
Sbjct: 447 YCSLINALGKAKRYEAADELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ V ++N L++ M+ G I+ L + ME+ D S+NI+++G +
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++F+ + ++P VT+ TL+ +EA ++ + M+ + DA ++S
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE-MKDKGFEYDAITYSS 624
Query: 233 LIKGLCAV 240
++ + V
Sbjct: 625 ILDAVGNV 632
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 53/232 (22%)
Query: 50 NLLHYDLIIT---KLGR----AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
+ + Y +I+ KLGR ++FDE++ D + P E I+ ++ Y +
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK--------DNCMQPTEKIYTTLLGIYFKVGK 283
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+E AL +F+EM TV ++ L+ + G++D ++ ++ ++PD N
Sbjct: 284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNN 343
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT------------------------- 196
LM+ R+E+ VF EM R PT+V++ T
Sbjct: 344 LMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 197 -----------LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
LI G C RV++AL L E+M P + SLI L
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDE-KGFPPCPAAYCSLINAL 454
>gi|357168491|ref|XP_003581673.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Brachypodium distachyon]
Length = 392
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I +L A+ F +V+++L + + + +E + +I YG A E A+++
Sbjct: 74 YSLMIDRLACARRFGDVEELLVRARVEKFRFSDEFFY-RLIKMYGNVANHPERAMEMLYA 132
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHGCVV 168
M +N + K+FN +L+ ML C + + + ++ E V+ D C +NIL+ G
Sbjct: 133 MPGYNCWPSTKTFNYVLH-MLVCKR--QYEVIHEVYESAPWLGVTLDTCCFNILIKGLCQ 189
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++A + EM K+ P +VT+ TL++ LC RVD+A +L E MR + D
Sbjct: 190 FGKFDEAISLLHEMPKQECLPNVVTYSTLMHFLCQHGRVDKAFELFE-RMRKEEIDADTV 248
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
V+ LI GLC G++++A + M
Sbjct: 249 VYNILISGLCREGKVTIAFDMFKSM 273
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 77/164 (46%), Gaps = 2/164 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ P + ++++I L + FDE +LH++ +P + + ++ F +
Sbjct: 166 ESAPWLGVTLDTCCFNILIKGLCQFGKFDEAISLLHEMPKQ-ECLPNVVTYSTLMHFLCQ 224
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A ++F+ M + +N L++ + GK+ D+F+ M + P++ +
Sbjct: 225 HGRVDKAFELFERMRKEEIDADTVVYNILISGLCREGKVTIAFDMFKSMSSEGCYPNSGT 284
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
Y +L+ + SR +A + M L+P+ ++ LI GLC
Sbjct: 285 YQVLLDSLLTSRNFTEAKDLVCMMSAEGLRPSFSSYKLLIDGLC 328
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 2/160 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L + D+ ++ +++ + + + +++ +IS R + A +
Sbjct: 211 NVVTYSTLMHFLCQHGRVDKAFELFERMRKE-EIDADTVVYNILISGLCREGKVTIAFDM 269
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F MSS ++ LL+++LT DL +M + + P SY +L+ G
Sbjct: 270 FKSMSSEGCYPNSGTYQVLLDSLLTSRNFTEAKDLVCMMSAEGLRPSFSSYKLLIDGLCS 329
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
LED +F +M+ + P + T+ L+ + L D
Sbjct: 330 VNCLEDGHLIFKQMVDQGFIPRMGTWTKLLTSMSLTYTGD 369
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y II + + K ++ + ++ + P + + +IS + L+ A+ +
Sbjct: 196 NVVMYSTIIDGMCKDKHVNDAFDLYSEMV-SKGISPNVVTYSALISGFFTVGQLKDAIDL 254
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F++M N++ V +FN L++ GK+ +F +M K + P+ +Y LM G +
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + A + M +R + P + ++ LI G C +VDEA+ L ++M + + PD
Sbjct: 315 VKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH-IIPDVV 373
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ SLI GLC +G++S AL +EM
Sbjct: 374 TYNSLIDGLCKLGKISYALKLVDEM 398
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 4/182 (2%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P +++ +I + + + A ++ EM S + V +++ L++ T G++
Sbjct: 193 VQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI 252
Query: 143 DLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
DLF I+E + PD ++NIL+ G ++++ VF M+K+ ++P +VT+ +L+ G
Sbjct: 253 DLFNKMILEN-IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 311
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
CL V++A + M + V PD Q + LI G C + ++ A+ +EM I
Sbjct: 312 YCLVKEVNKAKSILYTMSQ-RGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIP 370
Query: 261 DA 262
D
Sbjct: 371 DV 372
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 105/204 (51%), Gaps = 3/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + K DE + ++ H ++P+ + + ++I + + +AL++ DEM
Sbjct: 340 YNILIDGFCKIKKVDEAMNLFKEMHH-KHIIPDVVTYNSLIDGLCKLGKISYALKLVDEM 398
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
V + +++++L+A+ ++D+ L ++ ++ + P+ +Y IL+ G RL
Sbjct: 399 HDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRL 458
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA +F+++L + T+ T+ +I+G C + DEAL L M+ + PDA +
Sbjct: 459 EDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSK-MKDNSCIPDAVTYEI 517
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
+I+ L E A +E + R
Sbjct: 518 IIRSLFDKDENDKAEKLREMITRG 541
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ ++ L+ G + ++ A D ++ Q V +GTLI+GLC +V E
Sbjct: 125 PNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLC---KVGETRAA 181
Query: 214 KEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ + RV V+P+ +++++I G+C ++ A EMV I
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGIS 229
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +TF TLI GLCL+ ++ +AL L D + + D + +LI GLC VGE AL
Sbjct: 124 HPNTITFTTLIKGLCLKGQIHQAL-LFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAAL 182
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---------------M 218
DA+ +F +L++ P + F ++ L L L + M
Sbjct: 59 DAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPH 118
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ P+ F +LIKGLC G++ AL F + +V ++D
Sbjct: 119 QLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLD 161
>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 671
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 7/213 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y+ ++ L A+ +++ + ++ ++ + P E+ F I + +
Sbjct: 205 SMPVAPDTYT---YNTVLMGLCGARQWEDAEALMAEMVRN-HCPPNEVTFATQIRAFCQN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LL+ A+Q+ D M + V ++TL+N G++D +L M P+ YN
Sbjct: 261 GLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGM--LCKPNTICYN 318
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G +++R ED ++ EM+++ P TF L LC VD A+++ E M +
Sbjct: 319 AALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHK- 377
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
Y +PDA ++ +LI G + AL M
Sbjct: 378 YGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM 410
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 104/202 (51%), Gaps = 6/202 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLE 104
P +++ ++ + L RA+ +D+ ++++ Q L+ D ++ E+ F +I + +
Sbjct: 411 PCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLI--EMTFNILIDSLCQNGRVN 468
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164
+A++VF++M + + ++++L+N + G ++ +LFQ M PD YN ++
Sbjct: 469 NAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELFQSMP--CKPDIFGYNAVLK 526
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + R EDA ++ M ++ P +TF LI LC + VD A+++ E M + Y
Sbjct: 527 GLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPK-YGST 585
Query: 225 PDAQVFASLIKGLCAVGELSLA 246
PD + +LI G G L A
Sbjct: 586 PDIFTYNALINGFSEQGRLDDA 607
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 6/205 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQ-ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
N + Y+ + L A+ +++V Q I+ ++ D +P E F + S + L++ A++
Sbjct: 313 NTICYNAALKGLCIAQRWEDVGQLIVEMVRKD--CLPNEATFSMLTSCLCQNGLVDCAME 370
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
V ++M + + +NTL+ + G++D L M SPD S+N + G
Sbjct: 371 VLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP--CSPDVISFNAALKGLCR 428
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +DA ++ +ML+ +TF LI LC RV+ A+++ E M + Y PD
Sbjct: 429 AERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPK-YGCTPDIV 487
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
++SLI GL G + A+ + M
Sbjct: 488 TYSSLINGLSEQGLVESAIELFQSM 512
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ P KP ++ Y+ ++ L RA +++ +++ + P EI F +I+ +
Sbjct: 510 QSMPCKP---DIFGYNAVLKGLCRAARWEDAGELISNMARKD-CPPNEITFNILINSLCQ 565
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
L++ A++VF++M + + ++N L+N G++D L M PDA SY
Sbjct: 566 KGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTMS--CKPDAVSY 623
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
N + G + R ++A +V EML+ + P VTF
Sbjct: 624 NSALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTF 658
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 6/193 (3%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+++I KL + + +++L LK P + +++ Y R L A ++
Sbjct: 116 NILIKKLCAQRRLADAERVLDALKAAGAADP--VSHNTLVAGYCRDGRLADAERLLAAAG 173
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
V ++ TL+N G++ L M V+PD +YN ++ G +R+ ED
Sbjct: 174 LSGAANVV-TYTTLINGYCRSGRLADALALIASMP--VAPDTYTYNTVLMGLCGARQWED 230
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A + EM++ P VTF T I C +D A++L D M Y PD ++++L+
Sbjct: 231 AEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLL-DRMPQYGCTPDVVIYSTLV 289
Query: 235 KGLCAVGELSLAL 247
G G + A+
Sbjct: 290 NGFSEQGRVDDAI 302
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+ D S+N L+ G RL DA ++ +VT+ TLI G C R+ +AL
Sbjct: 143 AADPVSHNTLVAGYCRDGRLADAERLLAAAGLSGAA-NVVTYTTLINGYCRSGRLADALA 201
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L M V PD + +++ GLC + A EMVRN
Sbjct: 202 LIASM----PVAPDTYTYNTVLMGLCGARQWEDAEALMAEMVRN 241
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 106/213 (49%), Gaps = 5/213 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ I+ L + +E + +L +K++ ++P F ++S Y + L+ A QV D
Sbjct: 248 VSYNTILDVLCKKGKLNEARDLLLDMKNNG-LLPNRNTFNILVSGYCKLGWLKEAAQVID 306
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
M+ NV V ++N L+ + GKID L ME + PD +YN L++GC
Sbjct: 307 LMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCS 366
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDMMRVYNVKPDAQV 229
+++ D+M + ++P VT+ ++ E ++D A +L++ M PD
Sbjct: 367 SSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRK--MEESGFSPDCVT 424
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F +LI G C G LS A +EM R ++M++
Sbjct: 425 FNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N + + I+ L + D+ ++L V E ++ ++ + +E
Sbjct: 451 KGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVE 510
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILM 163
A++++DEM + ++ ++NT++ + GK D+ D L +++E + PD +YN ++
Sbjct: 511 -AMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTII 569
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G ++E A++ ++M+K+ +P L T L+ GLC E +D+ALKL +
Sbjct: 570 LGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKA 629
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
DA + ++I GLC A EM K+ D
Sbjct: 630 -IDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 108/211 (51%), Gaps = 5/211 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+++I L + DE ++ +++ + +++P+ + + +I+ ++
Sbjct: 316 DVWTYNMLIGGLCKDGKIDEAFRLKDEME-NLKLLPDVVTYNTLINGCFDCSSSLKGFEL 374
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D+M V+ ++N ++ + GK+D + + ME+ SPD ++N L++G
Sbjct: 375 IDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCK 434
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDA 227
+ RL +A+++ DEM ++ L+ VT T+++ LC E ++D+A K L R Y V D
Sbjct: 435 AGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFV--DE 492
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI G G+ A+ +EM +I
Sbjct: 493 VSYGTLIMGYFKDGKSVEAMKLWDEMKEKEI 523
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
L A+ + +M F+ S+NT+L+ + GK++ DL M+ + P+ ++NI
Sbjct: 228 LSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNI 287
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G L++A +V D M + + P + T+ LI GLC + ++DEA +LK++M +
Sbjct: 288 LVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENL- 346
Query: 222 NVKPDAQVFASLIKG 236
+ PD + +LI G
Sbjct: 347 KLLPDVVTYNTLING 361
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 106/234 (45%), Gaps = 24/234 (10%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + D+ L++L ++ +VP+E + +I Y R +E A Q
Sbjct: 526 SIITYNTMIGGLCHSGKTDQSIDKLNEL-LESGLVPDETTYNTIILGYCREGQVEKAFQF 584
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVV 168
++M + + + + N LL + T G +D+ LF + K + DA +YN ++ G
Sbjct: 585 HNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCK 644
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----------LKLKEDMM 218
R E+A+ + EM +++L P T+ ++ L R+ EA KL++ +
Sbjct: 645 EDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTI 704
Query: 219 RVYNVK------------PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
+ K P++ F+ I LC G+ A+ +E + I +
Sbjct: 705 SLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITL 758
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 5/175 (2%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML---TCGKIDRMTDL 144
+I I Y HA Q+F+ M +++ + + NTL+NA++ + + +
Sbjct: 140 VILDTSIGAYVACNRPHHAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAI 199
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ V + ++NIL++GC + +L +A + +M P V++ T++ LC
Sbjct: 200 FSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCK 259
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +++EA L D M+ + P+ F L+ G C +G L A + M +N +
Sbjct: 260 KGKLNEARDLLLD-MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNV 313
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCV 167
+F ++ V+ +FN L+ K+ L M+ + PD SYN ++
Sbjct: 199 IFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+L +A + +M L P TF L+ G C + EA ++ D+M NV PD
Sbjct: 259 KKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVI-DLMAQNNVLPDV 317
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+ LI GLC G++ A K+EM
Sbjct: 318 WTYNMLIGGLCKDGKIDEAFRLKDEM 343
>gi|225466731|ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Vitis vinifera]
Length = 503
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 16/245 (6%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPN-PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
P +L+ ++R QK+P AL++F PN +R+N Y +I LG +
Sbjct: 11 PTQLSQMIRTQKNPLTALKIFNEAKSKFPN---------YRHNGPVYATMINVLGSSGRI 61
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
E+++++ Q+K D+ ++ +F +V+ Y RA +++ A+ +F + FN SFNT
Sbjct: 62 AEMREVIDQMKQDS-CECKDSVFSSVMKTYARAGMVDEAVSLFKTLPQFNCVNWTGSFNT 120
Query: 128 LLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL ++ K++ LF V S N+LM R + A VF EM +
Sbjct: 121 LLRILVKESKLETACRLFLEHSCGWEVKSRIGSLNLLMDALCQINRSDLALHVFQEMRYQ 180
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP---DAQVFASLIKGLCAVGE 242
P ++ L+ GLC + R++EA L M + K D + +L+ LC G
Sbjct: 181 CCSPDKESYRILMRGLCEDGRLNEATHLLYSMFWRISQKGGGEDIAAYRTLLDALCDNGH 240
Query: 243 LSLAL 247
+ AL
Sbjct: 241 VEEAL 245
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y + L + E Q+L +++ D P I+ I+ R +E A++V
Sbjct: 295 SMASYSAMAIDLYSERKIGEANQVLDEMR-DRGFKPSLSIYEAKIAALCRCGGVEEAVKV 353
Query: 110 F-DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGC 166
+EM + TV+ +N +L + GK + M + V D +Y+IL+ G
Sbjct: 354 IKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGL 413
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R +A + + ML R P + T+ TLI GLCL R +A+ E+M+ V P
Sbjct: 414 CCDGRFVEASGILERMLIRSSSPGVETYNTLIRGLCLMGRQYDAVIWLEEMV-VQGKLPA 472
Query: 227 AQVFASLIKGLCA 239
V+ SL+ +C+
Sbjct: 473 VSVWDSLVASVCS 485
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P SY+ + R++ +A +V DEM R +P+L + I LC V+EA+K+
Sbjct: 294 PSMASYSAMAIDLYSERKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKV 353
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
++ M + P +++ ++KGLC G+ + A+G+ E+M R
Sbjct: 354 IKEEMVEDSCVPTVRLYNIVLKGLCREGKSAFAVGYLEKMAR 395
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACS 158
R + A QV DEM + ++ + + A+ CG ++ + +++E P
Sbjct: 310 RKIGEANQVLDEMRDRGFKPSLSIYEAKIAALCRCGGVEEAVKVIKEEMVEDSCVPTVRL 369
Query: 159 YNILMHGCVVSRRLEDAWKV-FDEMLKRRLQPTL--VTFGTLIYGLCLELRVDEALKLKE 215
YNI++ G + R + A+ V + E + R++ T+ L+ GLC + R EA + E
Sbjct: 370 YNIVLKG--LCREGKSAFAVGYLEKMARQVGCVADKETYSILVDGLCCDGRFVEASGILE 427
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
M+ + + P + + +LI+GLC +G A+ + EEMV
Sbjct: 428 RML-IRSSSPGVETYNTLIRGLCLMGRQYDAVIWLEEMV 465
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA LKP + + Y +I L +A DE ++ L+ + RV P + +I YG
Sbjct: 265 EANGLKP---DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGS 320
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A + A + + + +V ++N +L + GK+D +F+ M+K +P+ +Y
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTY 380
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NIL+ + +L+ A+++ D M K L P + T ++ LC ++DEA + E+M
Sbjct: 381 NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM-- 438
Query: 220 VYNV-KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y V PD F SLI GL VG + A E+M+
Sbjct: 439 DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML 474
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + ++ Q+L ++K P + + +VI + L+ A +F+E
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ V +++L++ G+ID + + +M+K ++P+ ++N L+ V + +
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A F M + + P VT+G LI GLC + ++A ++M + +KP + +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK-QGMKPSTISYTT 767
Query: 233 LIKGLCAVGELSLA 246
+I GL G ++ A
Sbjct: 768 MISGLAKAGNIAEA 781
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
+FK P + +K R+ + Y ++I L +A +E ++ + +K V+
Sbjct: 527 MFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ VI + + + A Q+ +EM + + TV ++ ++++ + KIDR+ + +
Sbjct: 587 TRA-YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL---AKIDRLDEAY 642
Query: 146 QIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ E K + + Y+ L+ G R+++A+ + +E++++ L P L T+ +L+ L
Sbjct: 643 MLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++EAL + M + P+ + LI GLC V + + A F +EM
Sbjct: 703 VKAEEINEALVCFQSMKEL-KCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 123/280 (43%), Gaps = 73/280 (26%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ +L +++ DE + ++ + P+EI FC++I G+ ++ A +V
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKV 469
Query: 110 FDEM-------SSFNVQRTVKSF----------------------------NTLLNAMLT 134
+++M +S +K+F NT ++ M
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529
Query: 135 CGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG---------------------CVVSRR- 171
G+ ++ +F+ I + PDA SY+IL+HG CV+ R
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589
Query: 172 -------------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ A+++ +EM + +PT+VT+G++I GL R+DEA L E+
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 648
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + +++SLI G VG + A EE+++ +
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T L + DE ++ ++K D P + +I RA L+ A ++
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKD--AAPNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
D M + V++ N +++ + K+D +F+ M+ K +PD ++ L+ G
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA+KV+++ML + + + +LI R ++ K+ +DM+ N PD Q
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN-QNCSPDLQ 518
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + + + GE EE+ + DA
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
H D+++T +F ++Q++ ++ P +F +I + + ++ AL + DE
Sbjct: 183 HSDMMLT------LFQQMQELGYE--------PTVHLFTTLIRGFAKEGRVDSALSLLDE 228
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M S ++ + +N +++ GK+D F +E + PD +Y ++ + R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L++A ++F+ + K R P + T+I G + DEA L E R P +
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE-RQRAKGSIPSVIAYN 347
Query: 232 SLIKGLCAVGELSLALGFKEEMVRN 256
++ L +G++ AL EEM ++
Sbjct: 348 CILTCLRKMGKVDEALKVFEEMKKD 372
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 23/259 (8%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP F + L RL KD A++ F+ TE P P YN L L++ + R
Sbjct: 62 KPQPEFVIGVLRRL-KDVNRAIEYFR---WYERRTEL-PHCPESYNSL---LLV--MARC 111
Query: 65 KMFDEVQQILHQLK-----HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
+ FD + QIL ++ E ++ C +A L V M F +
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLGCV------KANKLREGYDVVQMMRKFKFR 165
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKV 178
++ TL+ A D M LFQ M++ P + L+ G R++ A +
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSL 225
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM L +V + I +VD A K + + +KPD + S+I LC
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE-IEANGLKPDEVTYTSMIGVLC 284
Query: 239 AVGELSLALGFKEEMVRNK 257
L A+ E + +N+
Sbjct: 285 KANRLDEAVEMFEHLEKNR 303
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+S+N+LL M C D + + M P + ++ GCV + +L + + V
Sbjct: 99 ESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQM 158
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M K + +P + TLI D L L + M + +P +F +LI+G G
Sbjct: 159 MRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQEL-GYEPTVHLFTTLIRGFAKEG 217
Query: 242 ELSLALGFKEEMVRNKIEMD 261
+ AL +EM + ++ D
Sbjct: 218 RVDSALSLLDEMKSSSLDAD 237
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++ ++ L +A+ +E +K + + P ++ + +I+ + R A
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMK-ELKCTPNQVTYGILINGLCKVRKFNKAFVF 749
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
+ EM ++ + S+ T+++ + G I LF + PD+ YN ++ G
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809
Query: 169 SRRLEDAWKVFDEMLKRRL----QPTLVTFGTLIYGLCLE 204
R DA+ +F+E +R L + +V TL CLE
Sbjct: 810 GNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLE 849
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 2/181 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E K N++ Y +I G+ DE IL +L + P + +++ +
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNLYTWNSLLDALVK 704
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
A + AL F M ++ L+N + K ++ +Q M+K + P S
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y ++ G + + +A +FD P + +I GL R +A L E+
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824
Query: 219 R 219
R
Sbjct: 825 R 825
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 11/257 (4%)
Query: 3 KAKPTSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K P +P + S+L RL ALQ F + + + + ++ +DL I
Sbjct: 50 KTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH--------REYVHDASSFDLAIDIA 101
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + V ++H+++ R+ P F V Y A + A+++F M +
Sbjct: 102 ARLHLHPTVWSLIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQD 160
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ SFNT+L+ + ++++ +LF+ + S D +YN++++G + +R A +V E
Sbjct: 161 LASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKE 220
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++R + P L T+ T++ G ++ A + +M + + + D + +++ G G
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGFGVAG 279
Query: 242 ELSLALGFKEEMVRNKI 258
E+ A +EM+R +
Sbjct: 280 EIKRARNVFDEMIREGV 296
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ I+ L ++K ++ ++ L+ R + + + +++ + + AL+V
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEV 217
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + + ++NT+L G+I + F M+K D +Y ++HG V
Sbjct: 218 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 277
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A VFDEM++ + P++ T+ +I LC + V+ A+ + E+M+R +P+
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR-RGYEPNVT 336
Query: 229 VFASLIKGLCAVGELS 244
+ LI+GL GE S
Sbjct: 337 TYNVLIRGLFHAGEFS 352
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 72 QILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
Q H L H V + F I R L + M S + + K+F +
Sbjct: 75 QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 134
Query: 131 AMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ GK D+ LF M ++ D S+N ++ S+R+E A+++F L+ R
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 193
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
VT+ ++ G CL R +AL++ ++M+ + P+ + +++KG G++ A F
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVE-RGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 250 KEEMVRNKIEMD 261
EM + E+D
Sbjct: 253 FLEMKKRDCEID 264
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 6/201 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ G A + + ++ + V+P + +I + +E+A+ +
Sbjct: 264 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + V ++N L+ + G+ R +L Q ME + P+ +YN+++
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKP 225
+E A +F++M P L T+ LI G+ + R ++ A KL +M+ P
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVE-RGFIP 441
Query: 226 DAQVFASLIKGLCAVGELSLA 246
F ++ GL G + A
Sbjct: 442 RKFTFNRVLNGLLLTGNQAFA 462
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S NTL+N + G +D L +M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA + FDEML + L P VTF TLI G C RVD A ++ + M+ ++
Sbjct: 221 GLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L A ++M ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPD 316
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 95/183 (51%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A + FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + D+M + L+P +T+ TLI
Sbjct: 266 AKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIB 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D V+ +LI GLC G A EM+ +++
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQE-NIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLK 384
Query: 260 MDA 262
D
Sbjct: 385 PDT 387
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ + ++ +VP + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANEXFDEMLVKG-LVPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A +++ +M S ++ + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + +I C G++ +EM R+
Sbjct: 381 V-RLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L +A+ D+ + L Q+ + RV+P + N+I Y + A++V
Sbjct: 253 DLVTYNSVVHALCKARAMDKAEAFLRQMV-NKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG--- 165
F EM ++ V + + L+ ++ GKI D+F M K +PD SYNI+++G
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371
Query: 166 --CVVSRR------------------------------LEDAWKVFDEMLKRRLQPTLVT 193
C+V L+ A +F+EM ++P +VT
Sbjct: 372 KGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVT 431
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I LC ++D+A++ K + M V PD + LI+G C G L A E+
Sbjct: 432 YRTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEI 490
Query: 254 VRNKIEMD 261
+ N + +D
Sbjct: 491 MNNGMHLD 498
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP +++ Y +I L R D+ + +Q+ D V P++ + C +
Sbjct: 418 NEMRDHGVKP---DVVTYRTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQG 473
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + + + F++++N + G++ ++F + + + P
Sbjct: 474 FCTHGSLLK-AKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
DA Y++LM G + ++E A +VFD M+ ++P +V + TL+ G C R+DE L L
Sbjct: 533 DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLF 592
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP +++ +I GL G A EM + I MD
Sbjct: 593 REMLQ-RGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD 638
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 18/230 (7%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80
P+LAL F Q L+ R N++ + ++ AK DE IL +
Sbjct: 127 PELALAFF-----------GQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPE 175
Query: 81 TRVVPEEI---IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
VP+ I + G++ + L++ E + V ++NT+++ G
Sbjct: 176 LGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGD 234
Query: 138 IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+++ DLF +++++ + PD +YN ++H +R ++ A +M+ +R+ P T+
Sbjct: 235 VNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNN 294
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
LIYG + EA+++ ++M R +++ PD + L+ LC G++ A
Sbjct: 295 LIYGYSSTGQWKEAVRVFKEMRR-HSILPDVVTLSMLMGSLCKYGKIKEA 343
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 50 NLLHYDLI--------ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
N +H D++ + KLGR + Q I L + + P+ +++ ++ Y
Sbjct: 493 NGMHLDIVFFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPDAVVYSMLMDGYCLVG 548
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM------------- 148
+E AL+VFD M S ++ V + TL+N G+ID LF+ M
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608
Query: 149 -----------------------EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
E ++ D C+YNI++ G +R ++A +F E+
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 668
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
++ ++T T+I G+ RV+EA L + R V P ++ +I L G
Sbjct: 669 NVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV-PSVVTYSIMITNLIKEG 723
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
++ Y +++ L + +L + V P + + VI + + + A
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 240
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCV 167
+F EM + + ++N++++A+ +D+ L Q++ K V P+ +YN L++G
Sbjct: 241 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + ++A +VF EM + + P +VT L+ LC ++ EA + D M + PD
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF-DTMAMKGQNPDV 359
Query: 228 QVFASLIKGLCAVGEL 243
+ ++ G G L
Sbjct: 360 FSYNIMLNGYATKGCL 375
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ +SP + +Y ILM C + R E A F ++L+ L+ ++ L+ G C R DE
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDE 164
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
AL + PD ++ L+K LC G+
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK 197
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDA 156
RA E AL F ++ ++ + N LL + D D L + E PD
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDV 182
Query: 157 CSYNILMHGCV---VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SY+IL+ S + +D ++ E P +V + T+I G E V++A L
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEG-GAVCSPNVVAYNTVIDGFFKEGDVNKACDL 241
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++M++ + PD + S++ LC + A F +MV ++
Sbjct: 242 FKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 109/207 (52%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I + + D+ + +++ + P + + VI ++ ++ A+ F++M
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHG-LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + + +L++ + TC K D+ +L +++++ + + +N ++ R+
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 497
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ K+FD M++ ++P ++T+ TLI G CL ++DEA KL M+ V VKPD + +
Sbjct: 498 IESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSV-GVKPDIVTYGT 556
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
LI G C V + AL +EMV + +
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVS 583
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 98/189 (51%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L ++ D+ Q+ D + P I++ ++I + A ++
Sbjct: 410 NVVCYGTVIDVLCKSGSVDDAMLYFEQMI-DEGLTPNIIVYTSLIHGLCTCDKWDKAEEL 468
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + FN+++++ G++ LF +M + V PD +YN L+ GC +
Sbjct: 469 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 528
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A K+ M+ ++P +VT+GTLI G C R+D+AL L ++M+ V P+
Sbjct: 529 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVS-SGVSPNII 587
Query: 229 VFASLIKGL 237
+ +++GL
Sbjct: 588 TYNIILQGL 596
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ +F +I Y + ++ A+ VF +M + V + T+++ + G +D
Sbjct: 372 IQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAM 431
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F Q++++ ++P+ Y L+HG + + A ++ EML R + + F ++I
Sbjct: 432 LYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSH 491
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C E RV E+ KL + M+R+ VKPD + +LI G C G++ A MV ++ D
Sbjct: 492 CKEGRVIESEKLFDLMVRI-GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y+ I+ + E L +++ D V P + + +++++ + A ++
Sbjct: 270 DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG-VEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
FD M+ ++ + ++ TLL T G + M L +M + + PD +NIL+
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAK 388
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+++ A VF +M + L P +V +GT+I LC VD+A+ E M+ + P+
Sbjct: 389 QEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMID-EGLTPNII 447
Query: 229 VFASLIKGLC 238
V+ SLI GLC
Sbjct: 448 VYTSLIHGLC 457
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 97/186 (52%), Gaps = 3/186 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ + D+ H++ D ++P+ + + ++I+ +A+ ++ A++V
Sbjct: 200 DVVSYNTVLNGFFKEGDSDKAYSTYHEML-DRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ M V ++N++L+ + G+ + + L ++ V P+ +Y+ LM+
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCK 318
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R +A K+FD M KR L+P + T+ TL+ G + + E L + M+R ++PD
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR-NGIQPDHH 377
Query: 229 VFASLI 234
VF LI
Sbjct: 378 VFNILI 383
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMH 164
V M+ V S+N LL + + +L +M PD SYN +++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + A+ + EML R + P +VT+ ++I LC +D+A+++ M++ V
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK-NGVM 268
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD + S++ G C+ G+ A+G ++M + +E
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVE 303
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 84/165 (50%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ I + +I A ++ A ++ M S V+ + ++ TL+N ++D
Sbjct: 512 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 571
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++ VSP+ +YNI++ G +RR A +++ + K Q L T+ +++GL
Sbjct: 572 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C DEAL++ +++ + +++ + + F +I L G + A
Sbjct: 632 CKNNLTDEALRMFQNLC-LTDLQLETRTFNIMIGALLKCGRMDEA 675
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K FR + + + ++ L K + I+ + + +P+ + N++ +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180
Query: 105 HALQVFDEMSSFNVQRT---VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
AL++ M+ + V S+NT+LN G D+ + +++++ + PD +Y+
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYS 240
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL-KLKEDMMR 219
++ ++ ++ A +V + M+K + P +T+ ++++G C + EA+ LK+ MR
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKK--MR 298
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ ++SL+ LC G + A + M + +E D
Sbjct: 299 SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 340
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 91/198 (45%), Gaps = 9/198 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I A DE ++L + V P+ + + +I+ Y R ++ AL +
Sbjct: 515 DIITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDALAL 573
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EM S V + ++N +L + + +L+ I + + +YNI++HG
Sbjct: 574 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 633
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK---P 225
+ ++A ++F + LQ TF +I L R+DEA +D+ ++ P
Sbjct: 634 NNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEA----KDLFAAHSANGLVP 689
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ + + L G L
Sbjct: 690 DVRTYSLMAENLIEQGSL 707
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---CGKIDRMTDLFQIMEKYVSPDACSYN 160
E A VFDE+ ++ N L + + R + + V+P +Y
Sbjct: 37 EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 96
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ C + RL+ + ++K+ + +TF L+ GLC + R +A+ + M
Sbjct: 97 ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTE 156
Query: 221 YNVKPDAQVFASLIKGLC 238
PD + +L+KGLC
Sbjct: 157 LGCIPDVFSYNNLLKGLC 174
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 69/137 (50%), Gaps = 8/137 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYG--RARLLEHA 106
N++ Y++I+ L + +++ + K T++ E+ N+I +G + L + A
Sbjct: 585 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQL---ELSTYNII-LHGLCKNNLTDEA 640
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L++F + ++Q ++FN ++ A+L CG++D DLF + PD +Y+++
Sbjct: 641 LRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAEN 700
Query: 166 CVVSRRLEDAWKVFDEM 182
+ LE+ +F M
Sbjct: 701 LIEQGSLEELDDLFLSM 717
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y++II L + K DE + ++ H ++ P+ + + +I + + +L++
Sbjct: 251 NVWCYNIIINGLCKKKRVDEAMNLFKEM-HWKKINPDVVTYNILIDGLCKLGKISTSLEL 309
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEM S + ++N+LL+A+ +D+ L +I ++ + P+ C+Y L+ G
Sbjct: 310 VDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCK 369
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RLEDA+ +F E+L T+ T+ +I GLC + DEAL L M + PDA
Sbjct: 370 DGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACI-PDAV 428
Query: 229 VFASLIKGLCAVGE 242
+ ++I L GE
Sbjct: 429 SYETIIYALSEKGE 442
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + ++ Y + AL +F+ M V+ V +N ++N + ++D
Sbjct: 213 VKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAM 272
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF+ M K ++PD +YNIL+ G ++ + ++ DEM ++T+ +L++ L
Sbjct: 273 NLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL 332
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C +D+A+ L +++ + ++P+ + +LI GLC G L A +E++
Sbjct: 333 CKNHHLDQAITLVKEI-KDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEIL 384
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 102/211 (48%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + K + ++ ++ + P F ++ + R + A+ +
Sbjct: 146 DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKG-IFPNVYTFSILVDALCKDRKGKQAMNL 204
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M V+ V ++ +++ ++++ ++F +M ++ V P+ YNI+++G
Sbjct: 205 LAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCK 264
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+R+++A +F EM +++ P +VT+ LI GLC ++ +L+L D MR D
Sbjct: 265 KKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLEL-VDEMRSIGKTVDII 323
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ SL+ LC L A+ +E+ I+
Sbjct: 324 TYNSLLHALCKNHHLDQAITLVKEIKDQGIQ 354
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 81/175 (46%), Gaps = 3/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I F +I AL D + + + S+ L+N + G+ +
Sbjct: 78 PNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQM 137
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+ + +V+ D Y+ ++ + + DA++++ EM+ + + P + TF L+ LC +
Sbjct: 138 LR--KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKD 195
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ +A+ L MM+ VKP+ + +++ G C V +++ AL MV+ +E
Sbjct: 196 RKGKQAMNLLAMMMK-KGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVE 249
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPDACSYNILMHGCVVSRRLE 173
V V ++T+++++ GK +TD + +++ K + P+ +++IL+ R+ +
Sbjct: 143 VNADVVMYSTIIDSLCK-GKF--VTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGK 199
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + M+K+ ++P +VT+G ++ G CL +V++AL + M++ V+P+ + +
Sbjct: 200 QAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQ-EGVEPNVWCYNII 258
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMDA 262
I GLC + A+ +EM KI D
Sbjct: 259 INGLCKKKRVDEAMNLFKEMHWKKINPDV 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
FN +L +++ LF+ +E + P + ILM+ + + + + ++L
Sbjct: 13 FNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKIL 72
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K +P +TF TLI G+CL + EAL L D + + K D +A L+ GLC +GE
Sbjct: 73 KMGYEPNSITFTTLIKGMCLNGQAYEAL-LFHDHVVAHGFKLDQVSYAILMNGLCKMGET 131
Query: 244 SLAL 247
A+
Sbjct: 132 RAAM 135
>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 876
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 12/248 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P++ +L+ +D +AL F P F ++ Y ++ LGRAK F
Sbjct: 347 PYQANQVLKQLQDHTVALNFFYWLKRQPG---------FNHDGHTYTTMVGILGRAKQFG 397
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
+ ++L Q+ D P + + +I YGRA L A+ VF+EM + ++ TL
Sbjct: 398 AINKLLDQMVKDG-CQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTL 456
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
++ G +D +++Q M+ +SPD +Y+++++ + L A K+F EM+++
Sbjct: 457 IDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGC 516
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P LVT+ +I ALKL DM +PD ++ +++ L G L A
Sbjct: 517 VPNLVTYNIMIALQAKARNYQSALKLYRDMQSA-GFQPDKVTYSIVMEVLGHCGYLDEAE 575
Query: 248 GFKEEMVR 255
EM R
Sbjct: 576 AVFSEMKR 583
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 91/197 (46%), Gaps = 6/197 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A L P + Y +II LG+A ++ ++ + VP + + +I+ +
Sbjct: 477 QAAGLSP---DTFTYSVIINCLGKAGHLAAAHKLFCEMV-EQGCVPNLVTYNIMIALQAK 532
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
AR + AL+++ +M S Q +++ ++ + CG +D +F M+ K PD
Sbjct: 533 ARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPV 592
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +L+ + +E AW+ + ML L+P + T +L+ ++ +A L + M+
Sbjct: 593 YGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSML 652
Query: 219 RVYNVKPDAQVFASLIK 235
+ + P Q + L+
Sbjct: 653 EL-GLNPSLQTYTLLLS 668
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG DE + + ++K VP+E ++ ++ +G+A +E A
Sbjct: 551 FQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKN-WVPDEPVYGLLVDLWGKAGNVEKA 609
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
Q + M + ++ V + N+LL+A L K+ +L Q M E ++P +Y +L+
Sbjct: 610 WQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLLSC 669
Query: 166 CVVSRRLED 174
C +R D
Sbjct: 670 CTEARSPYD 678
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL + VFD + + ++ +V SFNTL+N + G +D+
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLSQ---SVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDK 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD +Y++L++G ++++A ++F EML + L P VTF TLI
Sbjct: 190 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C +VD A+++ + M+ ++ PD + +LI GLC G+L A EM ++
Sbjct: 250 GHCKNGKVDLAMEIYKQMLS-QSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
A ++P Y Y ++I L + DE ++ ++ D +VP + F +I + +
Sbjct: 198 HASGVQPDVYT---YSVLINGLCKESKMDEANELFXEML-DKGLVPNGVTFTTLIDGHCK 253
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
++ A++++ +M S ++ + ++NTL+ + G + + +L M K + PD +
Sbjct: 254 NGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKIT 313
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ G LE A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 314 YTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD+ + +I C G++ +EM R+
Sbjct: 374 SV-GLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRD 410
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ II + M E ++L VP+ + +C++I+ +E AL++F+E
Sbjct: 222 YNTIIDGYCKRDMLQEATELLKDAIFKG-FVPDRVTYCSLINGLCAEGDVERALELFNEA 280
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +++ + +N+L+ + G I + + +++E PD +YNI+++G +
Sbjct: 281 QAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNI 340
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA V ++ + + P + TF T+I G C L++D AL+L E M +Y + PDA + S
Sbjct: 341 SDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMW-MYGIAPDAITYNS 399
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
++ GLC G+ EEM+
Sbjct: 400 VLNGLCKAGKAKEVNETFEEMI 421
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNI 161
LE A+ + + M ++ + V ++NTL+ + K+ L ++M + PD +YN
Sbjct: 166 LEEAVALVESMDAY-IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNT 224
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G L++A ++ + + + P VT+ +LI GLC E V+ AL+L + +
Sbjct: 225 IIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEA-QAK 283
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++KPD V+ SL+KGLC G + AL EMV + D
Sbjct: 284 DLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPD 323
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 44/208 (21%)
Query: 82 RVVPEE------IIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM-- 132
R +PE + +C V+ Y + A +FDEM +V V +FN +L+A+
Sbjct: 69 RSLPERGCDVKPLAYCTVVRGLYAHGHGYD-ARHLFDEMLRRDVFPDVATFNNVLHALCQ 127
Query: 133 -----------------------LTC----------GKIDRMTDLFQIMEKYVSPDACSY 159
TC G+++ L + M+ Y++PD +Y
Sbjct: 128 KGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTY 187
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N LM G ++++A + M+ + P T+ T+I G C + EA +L +D +
Sbjct: 188 NTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAI- 246
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL 247
PD + SLI GLCA G++ AL
Sbjct: 247 FKGFVPDRVTYCSLINGLCAEGDVERAL 274
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 88/182 (48%), Gaps = 2/182 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LK R N + Y+++I + +E ++ ++ D +VP+ I F +I + R
Sbjct: 418 EEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDG-LVPDTISFNTLIHGFCR 476
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L+ A +F ++ T +FN L+ A + + +F +++ K PD +
Sbjct: 477 NGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYT 536
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y +L+ G + ++ A+ EM+ + P++ TFG ++ L + RV EA+ + M+
Sbjct: 537 YRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMV 596
Query: 219 RV 220
R+
Sbjct: 597 RM 598
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D + AL+LF N +A+ LKP +L+ Y+ ++ L R + Q+++++
Sbjct: 267 EGDVERALELF-------NEAQAKDLKP---DLVVYNSLVKGLCRQGLILHALQVMNEMV 316
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
D P+ + VI+ + + A V ++ V +FNT+++ K+
Sbjct: 317 EDG-CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKL 375
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D L + M Y ++PDA +YN +++G + + ++ + F+EM+ + +P +T+ L
Sbjct: 376 DSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNIL 435
Query: 198 IYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
I C +++EA +++ +D + PD F +LI G C G+L A
Sbjct: 436 IENFCKINQLEEASGVIVRMSQD-----GLVPDTISFNTLIHGFCRNGDLDGA 483
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 7/216 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + E Q L ++ + +P++ + +I Y + +L+ A ++
Sbjct: 183 DVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQG-CIPDDFTYNTIIDGYCKRDMLQEATEL 241
Query: 110 FDE--MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+ F R ++ +L+N + G ++R +LF + K + PD YN L+ G
Sbjct: 242 LKDAIFKGFVPDRV--TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL 299
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ A +V +EM++ P + T+ +I GLC + +A + D + V PD
Sbjct: 300 CRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI-VKGYLPD 358
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F ++I G C +L AL E M I DA
Sbjct: 359 VFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDA 394
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y ++ G DA +FDEML+R + P + TF +++ LC + + E+ L +
Sbjct: 82 AYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKV 141
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++ + + I+GLC G L A+ E M
Sbjct: 142 LK-RGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM 176
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P A +YN +M V + + A KV+ ML + P T I C+ R AL+L
Sbjct: 8 PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67
Query: 214 KEDM-MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ R +VKP A + ++++GL A G A +EM+R +
Sbjct: 68 LRSLPERGCDVKPLA--YCTVVRGLYAHGHGYDARHLFDEMLRRDV 111
>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 376
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 2/173 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
V + + +I++ + L+ A+ V + M +N L+N ++ K +
Sbjct: 126 VLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIR 185
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+FQ M + SP +YN L++G + R +A+ + EML++ P ++T+ LI GLC
Sbjct: 186 VFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVITYSLLIKGLC 245
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
L +V+ AL L ++ KPD Q+ LI GLC+VG+ LAL +M R
Sbjct: 246 LGRKVEMALHLWNQVIN-KGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNR 297
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 110/223 (49%), Gaps = 3/223 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K + Y +I L + D+ +L+ + +P ++ +I+
Sbjct: 118 EIAEVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMI-KXGCMPNAHVYNALINGLVG 176
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
A E A++VF EM + + T+ ++NTL+N + + DL +++EK +P +
Sbjct: 177 ASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAYDLVKEMLEKGWNPCVIT 236
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y++L+ G + R++E A ++++++ + +P + LI+GLC + AL L DM
Sbjct: 237 YSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMN 296
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R +N P+ +L++G G++ AL ++RN ++ D
Sbjct: 297 R-WNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRNGVQPD 338
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 1/153 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A V+ E+ V +N +LN G+I +L+++M K + S+NI+
Sbjct: 6 IDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVASFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + ++ + +++ M K +T+G L++GLC ++++L + E + V
Sbjct: 66 MRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLE-IAEVKG 124
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
DA ++++I LC +L A+ M++
Sbjct: 125 GVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIK 157
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
NT P ++ Y+ +I L +A+ F E ++ ++ + P I + +I
Sbjct: 191 GNTHCSP------TIITYNTLINGLCKAERFGEAYDLVKEML-EKGWNPCVITYSLLIKG 243
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
R +E AL +++++ + + V+ N L++ + + GK L+ M ++ +P+
Sbjct: 244 LCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLCSVGKTQLALSLYFDMNRWNCAPN 303
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++N LM G + +A + +L+ +QP ++++ + GLC R+ A+
Sbjct: 304 LVTHNTLMZGFYKDGDIRNALATWARILRNGVQPDIISYNITLKGLCSCNRISGAILFLH 363
Query: 216 DMM 218
D +
Sbjct: 364 DAL 366
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMH 164
AL ++ +M+ +N + + NTL+ G I + + +I+ V PD SYNI +
Sbjct: 288 ALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRNGVQPDIISYNITLK 347
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G R+ A + L +++ PT++T
Sbjct: 348 GLCSCNRISGAILFLHDALTKKIFPTIIT 376
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 108/212 (50%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
++ Y+ ++ + + D QI+ ++ KH ++P + + VI Y +A L+ AL
Sbjct: 211 DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKH---IMPNVVTYSTVIDGYAKAGRLDEAL 267
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+F+EM ++ S+NTLL+ G+ + ++ + ME + DA +YN L+ G
Sbjct: 268 NLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGY 327
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ E+ +VF+EM R+ P L+T+ TLI EA+++ + + +K D
Sbjct: 328 GKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA-GLKAD 386
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++++LI LC G + A+ F +EM + I
Sbjct: 387 VVLYSALIDALCKNGLVESAVSFLDEMTKEGI 418
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 17/204 (8%)
Query: 68 DEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFN------V 118
D+ +L +L + D+ + P + + VI G+ + A ++FDEM+ F+ +
Sbjct: 149 DDYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGI 208
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHGCVVSRRLED 174
++ + ++NTLL+A+ G++D FQIM K++ P+ +Y+ ++ G + RL++
Sbjct: 209 EQDIFTYNTLLDAVCKGGQMDLA---FQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDE 265
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F+EM + V++ TL+ R +EAL + ++ M +K DA + +L+
Sbjct: 266 ALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKE-MESSGIKKDAVTYNALL 324
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
G G+ EEM +I
Sbjct: 325 GGYGKQGKYEEVKRVFEEMKAERI 348
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 124 SFNTLLNAMLTCGK----IDRMTDLF-------QIMEKYVSPDACSYNILMHGCVVSRRL 172
++N +++A CGK +R ++F +++ + + D +YN L+ ++
Sbjct: 172 TYNAVIDA---CGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQM 228
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+++ EM ++ + P +VT+ T+I G R+DEAL L + M+ ++ D + +
Sbjct: 229 DLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNE-MKFASIGLDRVSYNT 287
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+ +G AL +EM + I+ DA
Sbjct: 288 LLSIYAKLGRFEEALNVCKEMESSGIKKDA 317
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K N++ Y +I +A DE + +++K + + + + + ++S Y +
Sbjct: 239 PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS-IGLDRVSYNTLLSIYAKLGR 297
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
E AL V EM S +++ ++N LL GK + + +F+ M+ + + P+ +Y+
Sbjct: 298 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYST 357
Query: 162 LMHGCVVSRRLEDAWKVF-----------------------------------DEMLKRR 186
L+ ++A +VF DEM K
Sbjct: 358 LIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEG 417
Query: 187 LQPTLVTFGTLI 198
++P +VT+ ++I
Sbjct: 418 IRPNVVTYNSII 429
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 115/272 (42%), Gaps = 72/272 (26%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA------- 106
++L+ L AK + Q ++ + I +I GRA L HA
Sbjct: 12 HELVYNVLHGAKNAEHALQFFRWVERSNLLEHNREIHLKIIEILGRASKLNHARCILLDM 71
Query: 107 ----------------------------LQVFDEMSSFNVQRTVKS-------------- 124
+++F +M V+RT+KS
Sbjct: 72 PKKGLEWDEDMWVMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRY 131
Query: 125 ---------------------FNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
FN L+ GK++ F+ M+ + ++PD +YN +
Sbjct: 132 MMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTM 191
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G +++E+A K F EM +R++ PT+VT+ TLI G RVD+AL+L E+ M+
Sbjct: 192 INGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEE-MKGLG 250
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+KP+A +++L+ GLC ++S A +EMV
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMV 282
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 92/181 (50%), Gaps = 9/181 (4%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + +I+ Y R + +E A + F EM + TV ++ TL+ + +DR+
Sbjct: 181 ITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYAS---VDRVD 237
Query: 143 DLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT-FGTL 197
D +++E+ + P+A +Y+ L+ G + ++ +A + EM+ + + PT + F L
Sbjct: 238 DALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRL 297
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I C +D A + + M+R+ +V +A + LI+ C G+ A+ ++++
Sbjct: 298 ISSQCKAGNLDAAADVLKAMIRL-SVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKD 356
Query: 258 I 258
I
Sbjct: 357 I 357
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R K +E ++ ++K + ++ P + + +I Y ++ AL++
Sbjct: 184 DVITYNTMINGYNRVKKMEEAEKYFLEMK-ERKIDPTVVTYTTLIKGYASVDRVDDALRL 242
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP-DACSYNILMHGCV 167
+EM ++ +++TLL + K+ + ++++KYV+P D + L+
Sbjct: 243 VEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQC 302
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPD 226
+ L+ A V M++ + +G LI C + D+A+KL + ++ + ++P
Sbjct: 303 KAGNLDAAADVLKAMIRLSVPTEAGHYGVLIEYYCKAGQYDKAVKLLDKLIEKDIILRPQ 362
Query: 227 A------QVFASLIKGLCAVGELSLALGFKEEMVR 255
+ + LI+ LC G+ + A E +VR
Sbjct: 363 STLHMELSAYNPLIEYLCNNGQTAKA----ETLVR 393
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ ++ +V SFNTL+N + G +D+
Sbjct: 133 PTSLYFFNILMHRFCKEGEIRL---AQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDK 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M V PD + +L++G ++++A ++F+EML + L P VTF TLI
Sbjct: 190 GFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C RVD AL++ + M+R PD + +LI GLC G+L A EM ++
Sbjct: 250 GHCKSGRVDLALEIYKQMLR-QGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLK 308
Query: 260 MD 261
D
Sbjct: 309 PD 310
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I+ Y R L+ ++ M + V V + L+N + K+D +L
Sbjct: 169 PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANEL 228
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++++K + P+ ++ L+ G S R++ A +++ +ML++ P L+T+ TLIYGLC
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCR 288
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + +A L +M + +KPD + +LI G C G+L A ++ M+ I +D
Sbjct: 289 KGDLKQARDLIVEM-SMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLD 345
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 3/202 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++I L + DE ++ +++ D +VP + F +I + ++ ++ AL+++ +M
Sbjct: 211 VLINGLCKESKMDEANELFNEML-DKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLR 269
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLED 174
+ ++NTL+ + G + + DL M K + PD +Y L+ G LE
Sbjct: 270 QGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLET 329
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A+++ M++ ++ V + LI GLC E R +A K+ +M+ V +KP+ + +I
Sbjct: 330 AFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSV-GLKPENGTYTMII 388
Query: 235 KGLCAVGELSLALGFKEEMVRN 256
G C G++ A +EM R+
Sbjct: 389 NGFCKQGDVKTASKLLKEMQRD 410
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYG--RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
H + V P+ ++ N + G + ++ A ++F+EM + +F TL++ G
Sbjct: 198 HASGVHPD--VYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSG 255
Query: 137 KIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
++D +++ Q++ + SPD +YN L++G L+ A + EM + L+P +T+
Sbjct: 256 RVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYT 315
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
TLI G C E ++ A +L++ M+ +++ D + +LI GLC G
Sbjct: 316 TLIDGSCKEGDLETAFELRKRMIE-ESIRLDDVAYTALISGLCQEG 360
>gi|242074342|ref|XP_002447107.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
gi|241938290|gb|EES11435.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
Length = 363
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 115/239 (48%), Gaps = 17/239 (7%)
Query: 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79
+DP L +FK + ++ L Y L+I KL A+ F +V+++L + K
Sbjct: 49 RDPSLINSVFKKACSRIDYKPSEAL---------YSLMIDKLAFARRFSDVEELLSKAKT 99
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFD---EMSSFNVQRTVKSFNTLLNAMLTCG 136
+ +E + +I YG + EH + D M +N + K+FN +L+ ++
Sbjct: 100 EKLRFSDEFFY-RLIKMYGN--VAEHPQKAIDTLFAMPGYNCWPSTKTFNYVLHMLVCKR 156
Query: 137 KIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ + + +++ + V+ D CS+NIL+ G + ++A + EM K+ QP + T+
Sbjct: 157 QYEVVHEIYSSAPRLGVTLDTCSFNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYS 216
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
T ++ LC VD+A +L E MR ++ D V+ LI GLC +S A + M
Sbjct: 217 TFMHFLCQRSLVDKAFELFE-RMRKQDIAADTVVYNILISGLCREERVSEAFDLFKSMT 274
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L + FDE +LH++ P + + F + L++ A ++F+ M
Sbjct: 180 FNILVKGLCQCSKFDEAISLLHEMPKQG-CQPNVATYSTFMHFLCQRSLVDKAFELFERM 238
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
++ +N L++ + ++ DLF+ M + P++ +Y +L+ G + +
Sbjct: 239 RKQDIAADTVVYNILISGLCREERVSEAFDLFKSMTSEGCYPNSGTYQVLLDGLISLGKF 298
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+A + M ++P+ ++ LI GLC E VD+A
Sbjct: 299 FEAKSLVSTMSTEGVRPSFQSYKLLIDGLCSEDCVDDA 336
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y + L + + D+ ++ +++ + + +++ +IS R + A +
Sbjct: 211 NVATYSTFMHFLCQRSLVDKAFELFERMRKQD-IAADTVVYNILISGLCREERVSEAFDL 269
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F M+S ++ LL+ +++ GK L M + V P SY +L+ G
Sbjct: 270 FKSMTSEGCYPNSGTYQVLLDGLISLGKFFEAKSLVSTMSTEGVRPSFQSYKLLIDGLCS 329
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
++DA V +M+ + P + T+ L+
Sbjct: 330 EDCVDDAHLVLKQMVGQGFVPRMGTWTKLL 359
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G +D L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +++DA ++FDEML + L P V F TLI G C RVD A+++ + M+ ++
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLS-QSLL 279
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + +LI GLC G+L +EM ++ D
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPD 316
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 109/217 (50%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ +VP +IF +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LVPNGVIFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S ++ + ++NTL+ + G + ++ L M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ +M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLN 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPDA+ + +I C G++ +EM R+
Sbjct: 381 V-GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ + DEM + L+P +T+ TLI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +D A + ++ M++ N++ D + +LI GLC G A EM+ ++
Sbjct: 326 GCCKEGDLDTAFEHRKQMIQE-NIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 384
Query: 260 MDA 262
DA
Sbjct: 385 PDA 387
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 114/222 (51%), Gaps = 8/222 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + L ++ ++ +LG+ M Q + Q+ + V P + F +I+ + ++ A
Sbjct: 158 FGFTLYSFNTLLLQLGKFDMVTSAQNVYAQI-FSSGVKPSLLTFNTMINILCKKGKVQEA 216
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHG 165
+ VF+++ F++ ++ +L+ K+D+ ++F M K +P++ +Y+ L++G
Sbjct: 217 VLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLING 276
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+ +A + +EM ++ ++PT+ T+ I LC RVD+A+ L M + P
Sbjct: 277 LCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGK-KGCSP 335
Query: 226 DAQVFASLIKGLCAVGELSLALG-----FKEEMVRNKIEMDA 262
Q + ++I GL G++ LA+G KE +V N + +A
Sbjct: 336 SVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNA 377
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI+ L R + + + L+ +K ++ P+E +C +IS + + L+ A F EM
Sbjct: 448 LIVENLKRGYL-NNATRFLYMMK-ESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLK 505
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS-----YNILMHGCVVSR 170
+ ++ +++ GKID LF+ ME+ + CS YN ++ G
Sbjct: 506 CGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE----NGCSASIETYNAIISGLSKGN 561
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R +A K +M ++ LQP +T+ +LI GLC + A K+ +M + N P+A +
Sbjct: 562 RFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEK-KNCLPNAHTY 620
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIE 259
SLI GLC G++ A E + N E
Sbjct: 621 TSLIYGLCQEGKVDAA----ERLTENGCE 645
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ + D +++ + P + + +I Y + ++ AL +F+ M
Sbjct: 480 YCELISGFCKGGKLDSATSFFYEML-KCGISPNQWTYTAMIDGYCKEGKIDVALSLFERM 538
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTD----LFQIMEKYVSPDACSYNILMHGCVVS 169
+++++N +++ + K +R ++ ++ E+ + P+ +Y L++G +
Sbjct: 539 EENGCSASIETYNAIISGL---SKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKN 595
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
A+K+F EM K+ P T+ +LIYGLC E +VD A +L E+ +P
Sbjct: 596 TATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN-----GCEPTIDT 650
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+++L+ GLC G + A E M
Sbjct: 651 YSTLVSGLCREGRSNEASQLVENM 674
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 107/217 (49%), Gaps = 7/217 (3%)
Query: 45 KPFRYNL----LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
K F+++L Y +I R + D+ ++ ++ D P + + +I+
Sbjct: 222 KIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDG-CNPNSVTYSTLINGLCNE 280
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSY 159
+ A+ + +EM+ ++ TV ++ ++++ G++D +L + M +K SP +Y
Sbjct: 281 GRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTY 340
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
++ G + ++E A ++ +MLK L P VT+ LI LC E R ALK+ D M
Sbjct: 341 TAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIF-DWME 399
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +AQ + +IKGL + ++ A+ +M+++
Sbjct: 400 GHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKD 436
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +IS RA +E A+ ++ +M + ++N L+N + T G+ +
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394
Query: 145 FQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME + + +A +YN ++ G +E A VF++MLK PT+VT+ TLI
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLK 454
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ A + MM+ N +PD + + LI G C G+L A F EM++ I
Sbjct: 455 RGYLNNATRFLY-MMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGIS 509
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+LL ++ +I L + E + +++ + P+ + ++I + R R L+ A +V
Sbjct: 196 SLLTFNTMINILCKKGKVQEAVLVFNKI-FQFDLCPDAFTYTSLILGHCRNRKLDKAFEV 254
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FD M +++TL+N + G+I D+ + M EK + P +Y + +
Sbjct: 255 FDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD 314
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + M K+ P++ T+ +I GL +++ A+ + M++ + P+
Sbjct: 315 IGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLK-EGLVPNTV 373
Query: 229 VFASLIKGLCAVGELSLAL 247
+ +LI LC G +AL
Sbjct: 374 TYNALINELCTEGRFGIAL 392
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNI 161
+E A+ VF++M TV ++NTL+ L G ++ T L+ + E PD +Y
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G +L+ A F EMLK + P T+ +I G C E ++D AL L E M
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEE-N 541
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ + ++I GL S A F +M ++
Sbjct: 542 GCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQ 579
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 99/209 (47%), Gaps = 10/209 (4%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q L+P N + Y +I L + + +I H+++ +P + ++I YG +
Sbjct: 576 QGLQP---NTITYTSLINGLCKNTATNLAFKIFHEMEKK-NCLPNAHTYTSLI--YGLCQ 629
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
E + + ++ + T+ +++TL++ + G+ + + L + M EK +SP Y
Sbjct: 630 --EGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYC 687
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ S +++ A ++F+ M + QP L + LI LC R +EAL + + +++
Sbjct: 688 SLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLK- 746
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGF 249
D V+ L+ GL G+ L + F
Sbjct: 747 KQWNSDLIVWTVLVDGLLQEGDSDLCMKF 775
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 105/214 (49%), Gaps = 4/214 (1%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++++ +++++T L RA + + ++ D R P I + +I +A + A++
Sbjct: 77 HDVISFNILVTGLCRAGKIETALEFFRKM--DDRCSPNVITYSVLIDGLCKANRVSQAVE 134
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+ + M + V ++ L++ + K+ ++ ++++ P+ +YN L+HG
Sbjct: 135 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 194
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+RR+ DA + +M R P +VT+GTLI GLC RV +A + DM+ PD
Sbjct: 195 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMID-KGGTPDL 253
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI GLC ++ ++ V I+ D
Sbjct: 254 MIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 113/223 (50%), Gaps = 3/223 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ + +++ Y +++ L + ++L ++ D VP + + +++ R
Sbjct: 137 ESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREML-DAGCVPNLVTYNSLLHGLCR 195
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
AR + AL + +M+ V ++ TL++ + G++ D L +++K +PD
Sbjct: 196 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 255
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L++G + +++++ + + ++P +VT+ ++IYGLC R+DEA +L +
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL-YV 314
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD ++++LI GLC G++ A E M + + D
Sbjct: 315 KSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDAD 357
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 3/204 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L + D Q++ +K P + + ++ R LE A+ +
Sbjct: 9 NVVTYNSLIDGLCKNNEPDRAQELFEHMKS-VECSPSMVTYNTLLDGLFRTGKLERAMAL 67
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F EM V SFN L+ + GKI+ + F+ M+ SP+ +Y++L+ G +
Sbjct: 68 FQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKA 126
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+ A ++ + M R P ++T+ L+ GLC E +V A ++ +M+ V P+
Sbjct: 127 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCV-PNLVT 185
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+ SL+ GLC +S AL +M
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDM 209
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + + +L + D P+ +I+ +I+ +A ++ ++ +
Sbjct: 217 NVVTYGTLIDGLCKVGRVKDACAMLADMI-DKGGTPDLMIYNMLINGLCKADQVDESIAL 275
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
S ++ V ++++++ + ++D L + + PD Y+ L+ G
Sbjct: 276 LRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCK 335
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A+ +++ M +VT+ TLI GLC RVDEA L M+R+ P
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRM-GTPPSTM 394
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ SLIKGLC + L A+ EEM R+
Sbjct: 395 TYNSLIKGLCDLNHLDEAIELVEEMERS 422
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 104/200 (52%), Gaps = 9/200 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII-FCNVISFYGR 99
+ +KP +++ Y +I L R+ DE ++L +K +R P ++I + +I +
Sbjct: 281 SGGIKP---DVVTYSSVIYGLCRSNRLDEACRLLLYVK--SRGCPPDVILYSTLIDGLCK 335
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-S 158
A ++ A +++ M+ V +++TL++ + G++D L M + +P + +
Sbjct: 336 AGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMT 395
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDM 217
YN L+ G L++A ++ +EM + P+ VT+ LI+G+C RVD AL ++M
Sbjct: 396 YNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEM 455
Query: 218 MRVYNVKPDAQVFASLIKGL 237
+ V PD ++ L++GL
Sbjct: 456 ID-NGVIPDHITYSILLEGL 474
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M + V ++N+L++ + + DR +LF+ M+ SP +YN L+ G + +
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
LE A +F EML RR +++F L+ GLC +++ AL+ M P+ ++
Sbjct: 61 LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDD--RCSPNVITYS 117
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
LI GLC +S A+ E M
Sbjct: 118 VLIDGLCKANRVSQAVELLESM 139
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 4/214 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKM-FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
R NL+ Y+ +I G+ M F +V + +++ + V P+ I F ++++ R L E
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNC-VQPDRITFNSLLAVCSRGGLWEA 357
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMH 164
A +FDEMS+ +++ V S+NTLL+A+ G++D + L Q+ K + P+ SY+ ++
Sbjct: 358 ARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVID 417
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G + R ++A +F EM + V++ TL+ R +EAL + +M V +K
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASV-GIK 476
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + +L+ G G+ EM R +
Sbjct: 477 KDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHV 510
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ ++ + + D +IL Q+ R++P + + VI + +A + AL +
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPAK-RIMPNVVSYSTVIDGFAKAGRFDEALNL 431
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM N+ S+NTLL+ G+ + D+ + M + D +YN L+ G
Sbjct: 432 FGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGK 491
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ KVF EM + + P L+T+ TLI G EA+++ + + ++ D
Sbjct: 492 QGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFRE-FKSAGLRADVV 550
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++++LI LC G + A+ +EM + I
Sbjct: 551 LYSALIDALCKNGLVGSAVSLIDEMTKEGIS 581
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K N++ Y +I +A FDE + ++++ + + + + ++S Y +
Sbjct: 401 PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LNIALDRVSYNTLLSIYTKVGR 459
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNI 161
E AL + EM+S +++ V ++N LL GK D + +F M++ +V P+ +Y+
Sbjct: 460 SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYST 519
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G ++A +VF E L+ +V + LI LC V A+ L ++M +
Sbjct: 520 LIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTK-E 578
Query: 222 NVKPDAQVFASLI 234
+ P+ + S+I
Sbjct: 579 GISPNVVTYNSII 591
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK----IDRMTDLF 145
F +IS YGR+ L E A+ VF+ M + ++ + ++N +++A CGK ++ F
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDA---CGKGGMEFKQVAKFF 327
Query: 146 QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M++ V PD ++N L+ C E A +FDEM RR++ + ++ TL+ +C
Sbjct: 328 DEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKG 387
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++D A ++ M + P+ ++++I G G AL EM I +D
Sbjct: 388 GQMDLAFEILA-QMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALD 443
>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 669
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 7/216 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y+ ++ L AK +++ ++++ ++ + P E+ F I + +
Sbjct: 203 SMPVAPDTYT---YNTVLKGLCGAKQWEKAEELMEEMIRNN-CHPNEVTFATQIRSFCQN 258
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LL+HA+Q+ + M + V ++TL+N G++D L M P+ YN
Sbjct: 259 GLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTM--LCKPNTVCYN 316
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G ++ R +D ++ EM+++ P TF L LC VD A+++ E M +
Sbjct: 317 AALKGLCMAERWKDVGELIAEMVRKDCPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQK- 375
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
Y +PD ++ +LI G + AL + M+ N
Sbjct: 376 YGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCN 411
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 6/205 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+ + ++ + L R + + +V++++ Q L+ D ++ E+ F +I + L+ HA++
Sbjct: 413 DTISFNAALKALCRTERWYDVEELIAQMLREDCPLI--EMTFNILIDSLCQHGLVNHAIE 470
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
VF++M + + ++++L+N G ++ +LFQ M PD SYN ++ G
Sbjct: 471 VFEQMPKYRCTPDIVTYSSLINGFSEQGLVESAIELFQSMP--CKPDIFSYNAVLKGLCR 528
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ R EDA ++ M ++ P +TF LI LC + D A+++ + M Y PD
Sbjct: 529 AARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAIEVFKQMPE-YGSTPDIF 587
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI G G L AL M
Sbjct: 588 TYNALINGFSEQGRLDDALNLLSTM 612
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ +++I KL + + +++L LK + + +++ Y R L A +V
Sbjct: 110 VIACNILIKKLCAHRRLADAERVLDALKESGSA--DAVSHNTLVAGYCRDGRLADAERVL 167
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
E + + V ++ L+N G++ +L M V+PD +YN ++ G ++
Sbjct: 168 -EAAKVSGAANVVTYTALINGYCRSGRLADALNLIASMP--VAPDTYTYNTVLKGLCGAK 224
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ E A ++ +EM++ P VTF T I C +D A++L E M R Y PD ++
Sbjct: 225 QWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPR-YGCTPDVVIY 283
Query: 231 ASLIKGLCAVGELSLAL 247
++L+ G G + AL
Sbjct: 284 STLVNGFSEQGRVDDAL 300
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++ P KP ++ Y+ ++ L RA +++ +++ + P EI F +I+ +
Sbjct: 508 QSMPCKP---DIFSYNAVLKGLCRAARWEDAGELIANMARKD-CPPNEITFNILINSLCQ 563
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
+ A++VF +M + + ++N L+N G++D +L M PDA SY
Sbjct: 564 KGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTMS--CKPDAISY 621
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
N + G + R ++A ++ EML+++ P VTF
Sbjct: 622 NSTLKGLCRAERWKEAEEIVAEMLRKKCPPNEVTF 656
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 4/204 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ + L A+ + +V +++ ++ P E F + S + L++ A++V
Sbjct: 311 NTVCYNAALKGLCMAERWKDVGELIAEMVRKD-CPPNEATFSMLTSCLCQHGLVDCAMEV 369
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
++M + + V +NTL+N G++D L M +PD S+N + +
Sbjct: 370 VEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALMLLDSM--LCNPDTISFNAALKALCRT 427
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R D ++ +ML+ +TF LI LC V+ A+++ E M + Y PD
Sbjct: 428 ERWYDVEELIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPK-YRCTPDIVT 486
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
++SLI G G + A+ + M
Sbjct: 487 YSSLINGFSEQGLVESAIELFQSM 510
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 54/152 (35%), Gaps = 37/152 (24%)
Query: 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD----------------- 180
+D L M P + NIL+ RRL DA +V D
Sbjct: 92 LDAALRLVGSMPSSEPPAVIACNILIKKLCAHRRLADAERVLDALKESGSADAVSHNTLV 151
Query: 181 ----------------EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
E K +VT+ LI G C R+ +AL L M V
Sbjct: 152 AGYCRDGRLADAERVLEAAKVSGAANVVTYTALINGYCRSGRLADALNLIASM----PVA 207
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PD + +++KGLC + A EEM+RN
Sbjct: 208 PDTYTYNTVLKGLCGAKQWEKAEELMEEMIRN 239
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 108/212 (50%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
++ Y+ ++ + + D QI+ ++ KH ++P + + VI Y +A L+ AL
Sbjct: 325 DIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKH---IMPNVVTYSTVIDGYAKAGRLDEAL 381
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+F+EM ++ S+NTLL+ G+ + ++ + ME + DA +YN L+ G
Sbjct: 382 NLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGY 441
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ E+ +VF+EM R+ P L+T+ TLI EA+++ + + +K D
Sbjct: 442 GKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKA-GLKAD 500
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++++LI LC G + A+ F +EM + I
Sbjct: 501 VVLYSALIDALCKNGLVESAVSFLDEMTKEGI 532
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 104/211 (49%), Gaps = 4/211 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDE 112
+ +I+ GR+ DE ++ +K + + P + + VI G+ + A ++FDE
Sbjct: 223 FSALISAYGRSGYCDEAIKVFETMK-SSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDE 281
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M VQ +FN+LL G + +LF +++ + + D +YN L+ +
Sbjct: 282 MLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 341
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A+++ EM ++ + P +VT+ T+I G R+DEAL L + M+ ++ D +
Sbjct: 342 MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNE-MKFASIGLDRVSYN 400
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ +G AL +EM + I+ DA
Sbjct: 401 TLLSIYAKLGRFEEALNVCKEMESSGIKKDA 431
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 37/192 (19%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K N++ Y +I +A DE + +++K + + + + + ++S Y +
Sbjct: 353 PRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS-IGLDRVSYNTLLSIYAKLGR 411
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
E AL V EM S +++ ++N LL GK + + +F+ M+ + + P+ +Y+
Sbjct: 412 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYST 471
Query: 162 LMHGCVVSRRLEDAWKVF-----------------------------------DEMLKRR 186
L+ ++A +VF DEM K
Sbjct: 472 LIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEG 531
Query: 187 LQPTLVTFGTLI 198
++P +VT+ ++I
Sbjct: 532 IRPNVVTYNSII 543
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 15/219 (6%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ LKP NL ++++ R DE +L +L DT ++ + C+ +
Sbjct: 579 KGLKP---NLFICSVLVSCFYREGKVDEANLVLQKLA-DTDMIQD----CSASTLN---- 626
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYN 160
+ + + ++ N Q +N ++ + G++ +LF+ ++ K PD +Y+
Sbjct: 627 -IGKVAHIIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYS 685
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+HGC S ++ A+ + DEML RL P +VT+ +LIYGLC V A+ L + ++
Sbjct: 686 SLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLF-NKLQS 744
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ P+A + +LI G C G + A K++M++ I+
Sbjct: 745 KGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQ 783
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K N++ Y L++ + +E ++++ ++K + ++V +E+ + +I+ Y + +
Sbjct: 227 VKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRM 286
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
E A +V DEM VQ + +NT++N G++ + L Q E + V+ D SYN L
Sbjct: 287 EDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTL 346
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + A++ D M++ T +T+ TL+ G C +D+ALKL M++
Sbjct: 347 VDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLK-RG 405
Query: 223 VKPDAQVFASLIKGLCAVGELSLALG-FKEEMVRN 256
V P+ ++L+ G G+ AL +KE + R
Sbjct: 406 VVPNEISCSTLLDGFFKAGKTEQALNLWKETLARG 440
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 102/201 (50%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L + + + + LK +P+ + ++I + ++ A + DEM
Sbjct: 649 WNIVILGLCKLGRVADARNLFEDLKVKG-FIPDNFTYSSLIHGCSASGSIDLAFGLRDEM 707
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
S + + ++N+L+ + + R LF ++ K +SP+A +YN L+ G
Sbjct: 708 LSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNT 767
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+K+ +M+K +QPT+ T+ LI+GLC + ++EA+KL + M+ NV P+ + +
Sbjct: 768 TEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIE-NNVDPNFITYWT 826
Query: 233 LIKGLCAVGELSLALGFKEEM 253
LI+G G + EM
Sbjct: 827 LIQGYARCGNMKAITKLYNEM 847
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 127/313 (40%), Gaps = 72/313 (23%)
Query: 6 PTSPFRLA----SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
+SPF A +L R++ DP AL LF+ L P R +LL + ++ L
Sbjct: 7 SSSPFTHALLHAALRRVRLDPDAALHLFR-------------LAPCRPSLLAHAQLLHIL 53
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY-----------------GRARLLE 104
A+ F + +L L V P +F +++ Y A L+
Sbjct: 54 AHARRFPAARALLASLLSAHSVAP--TLFPDLVEVYKDFSFSAASFDLLLRAHADAGQLK 111
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ---------------IME 149
AL VFDEM +RT++S N LLN ++ G I +FQ IM
Sbjct: 112 DALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMA 171
Query: 150 KYVSPDA---------------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
K D +Y+ +M G + E A K+ + + L
Sbjct: 172 KAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLS 231
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P +VT+ L+ G C E R++EA K+ +++ + D + +LI G C G + A
Sbjct: 232 PNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANR 291
Query: 249 FKEEMVRNKIEMD 261
++EM+ ++++
Sbjct: 292 VRDEMIDAGVQVN 304
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 2/178 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP EI ++ + +A E AL ++ E + + R V + NT++N + ++
Sbjct: 406 VVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAE 465
Query: 143 DLFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+LF M+++ P D+ +Y L+ G L A ++ EM P++ F + I GL
Sbjct: 466 ELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGL 525
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ + + ++ + M + P+ + +LI G C G L A EMV ++
Sbjct: 526 FIAKQSGKVNDIRVE-MSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLK 582
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 93/198 (46%), Gaps = 12/198 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ + +I L + + E +++ H++K + + + + +I Y + L A Q+
Sbjct: 444 NVVTINTVINGLCKNRRMTEAEELFHRMK-EWSCPCDSLTYRTLIDGYCKLGDLGRATQI 502
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
EM + +V+ FN+ + + + ++ D+ ++ K +SP+ +Y L+ G
Sbjct: 503 RIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCK 562
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKE-DMMR---- 219
L DA ++ EM+++ L+P L L+ E +VDEA KL + DM++
Sbjct: 563 EGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSA 622
Query: 220 -VYNVKPDAQVFASLIKG 236
N+ A + SL G
Sbjct: 623 STLNIGKVAHIIESLAGG 640
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 36/210 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+P++ + Y R + HA EM + + +++ +++ G+ +
Sbjct: 160 TLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVAR 219
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYG 200
L ++ K +SP+ +Y +L+ G R+E+A KV E+ + ++ V +G LI G
Sbjct: 220 KLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALING 279
Query: 201 LCLELRVDEALKLKEDM--------MRVYN--------------------------VKPD 226
C R+++A +++++M M VYN V D
Sbjct: 280 YCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLD 339
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +L+ G C G ++ A + MVRN
Sbjct: 340 EYSYNTLVDGYCRKGFMTKAFETCDMMVRN 369
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 103/240 (42%), Gaps = 37/240 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ IT L AK +V I ++ + P + + +I+ + + L A ++ EM
Sbjct: 518 FNSFITGLFIAKQSGKVNDIRVEMSAKG-LSPNTVTYGALIAGWCKEGNLHDACILYFEM 576
Query: 114 SSFNVQRTVKSFNTLLNAMLTC----GKIDRM---------TDLFQ-------------- 146
V++ +K + + +++C GK+D TD+ Q
Sbjct: 577 ----VEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAH 632
Query: 147 IMEKYVSPDACS----YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
I+E + S +NI++ G R+ DA +F+++ + P T+ +LI+G
Sbjct: 633 IIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCS 692
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+D A L+++M+ + P+ + SLI GLC +S A+ ++ I +A
Sbjct: 693 ASGSIDLAFGLRDEMLSA-RLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNA 751
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP +++ Y +I L R D+ + +Q+ D VVP++ + C +
Sbjct: 420 NEMRDHGVKP---HVVTYMTVIAALCRIGKMDDAMEKFNQMI-DQGVVPDKYAYHCLIQG 475
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + ++ + F +++N + G++ ++F + + + P
Sbjct: 476 FCTHGSLLK-AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 534
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
DA YN+LM G + ++E A +VFD M+ ++P +V +GTL+ G C R+DE L L
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP ++ +I GL G A EM + I M+
Sbjct: 595 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L +A+ D+ + L Q+ + V+P+ + N+I Y + A++V
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 313
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR----------------------------- 140
F EM ++ V + NTL+ ++ GKI
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYAT 373
Query: 141 ------MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
MTDLF +M ++P C++N+L+ L+ A +F+EM ++P +VT
Sbjct: 374 KGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVT 433
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I LC ++D+A++ K + M V PD + LI+G C G L A E+
Sbjct: 434 YMTVIAALCRIGKMDDAME-KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492
Query: 254 VRNKIEMD 261
+ N + +D
Sbjct: 493 MNNGMRLD 500
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQP---LKPFRYNLLHYDLIITKLGRAKMF 67
R S P LA+ LF N + AQ L P Y Y +++ RA
Sbjct: 78 RAPSSAACGSGPALAVALF-----NRAASRAQGPRVLSPTSYT---YAILMDCCTRAHRP 129
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF-DEMSSFNVQRTVKSFN 126
+ QL T + + II +++ + A+ + AL + V S+N
Sbjct: 130 ELALAFFGQLLR-TGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 188
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK---YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
LL ++ GK + DL ++M + SPD +YN ++ G + A +F EM+
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R + P LVT+ ++++ LC +D+A M+ V PD + +LI G + G+
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNLIYGYSSTGQW 307
Query: 244 SLALGFKEEMVRNKI 258
A+ +EM R I
Sbjct: 308 KEAVRVFKEMRRQSI 322
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F YN+L L G++ D++ +++ + T P+ + + VI + + + A
Sbjct: 185 FSYNILLKSL--CNQGKSGQADDLLRMMAE--GGTVCSPDVVAYNTVIDGFFKEGDVNKA 240
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
+F EM + + +++++++A+ +D+ L Q++ K V PD +YN L++G
Sbjct: 241 CDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYG 300
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + ++A +VF EM ++ + P +V TL+ LC ++ EA + D M + P
Sbjct: 301 YSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVF-DTMAMKGQNP 359
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ G G L
Sbjct: 360 DVFSYTIMLNGYATKGCL 377
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 38/230 (16%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ + II L + + Q I L + + P+ +++ ++ Y +E AL
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP------------ 154
+VFD M S ++ V + TL+N G+ID LF ++++K + P
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616
Query: 155 -----------------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+ C+Y+I++ G +R ++A +F E+ ++ +
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+T T+I G+ RV+EA L + R + P A ++ +I L G
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISR-SGLVPCAVTYSIMITNLIKEG 725
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ + DE + ++ + P I++ +I A A
Sbjct: 570 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFEAGRTVPAKVK 628
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM+ + +++ +L + D LF+ + V D + N ++ G
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKP 225
+RR+E+A +F + + L P VT+ +I L E V+EA EDM M+ +P
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEA----EDMFSSMQNAGCEP 744
Query: 226 DAQVFASLIKGL 237
D+++ +++ L
Sbjct: 745 DSRLLNHVVREL 756
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 110/209 (52%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + DE + +++ + P+ + + VI ++ +E A+ F++M
Sbjct: 344 YNILICAYAKQGKVDEAMLVFSKMRQQG-LNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +N+L++ + TC K +R +L +++++ + + +N ++ R+
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 462
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ K+FD M++ ++P ++T+ TLI G CL ++DEA+KL M+ V +KP+ + +
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSV-GLKPNTVTYRT 521
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G C + + AL +EM + + D
Sbjct: 522 LINGYCKISRMGDALVLFKEMESSGVSPD 550
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P+ ++ +I Y + ++ A+ VF +M + ++ ++ + G++ D M
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLY 398
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
Q++++ +SP YN L+HG + E A ++ EML R + + F ++I C
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 458
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E RV E+ KL + M+R+ VKPD +++LI G C G++ A+ MV
Sbjct: 459 EGRVIESEKLFDLMVRI-GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMV 508
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 8/163 (4%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ I + +I Y A ++ A+++ M S ++ ++ TL+N KI RM
Sbjct: 477 VKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYC---KISRMG 533
Query: 143 D---LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D LF+ ME VSPD +YNI++ G +RR A +++ + + Q L T+ ++
Sbjct: 534 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+GLC D+AL++ +++ + ++K +A+ F +I L VG
Sbjct: 594 HGLCKNKLTDDALRMFQNLC-LMDLKLEARTFNIMIDALLKVG 635
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y II L + + D+ ++L + + V+P + +++ Y + + A+
Sbjct: 230 DVVTYSSIIAALCKGQAMDKAMEVLTSMVKNG-VMPNCRTYTSIMHGYCSSGQPKEAIGF 288
Query: 110 FDEMSSFNVQRT-----VKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILM 163
++ S V+ + ++ TLL T G + M L +M + + PD YNIL+
Sbjct: 289 LKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILI 348
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
++++A VF +M ++ L P VT+G +I LC RV++A+ E M+ +
Sbjct: 349 CAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMID-EGL 407
Query: 224 KPDAQVFASLIKGLC 238
P V+ SLI GLC
Sbjct: 408 SPGNIVYNSLIHGLC 422
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+PD SY +++G A+ + EML RR+ P +VT+ ++I LC +D+A++
Sbjct: 193 APDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAME 252
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ M++ V P+ + + S++ G C+ G+ A+GF +++ + +E D
Sbjct: 253 VLTSMVK-NGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDG 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q L P + + Y +I L ++ ++ Q+ D + P I++ ++I
Sbjct: 370 QGLNP---DAVTYGAVIGILCKSGRVEDAMLYFEQMI-DEGLSPGNIVYNSLIHGLCTCN 425
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYN 160
E A ++ EM + FN+++++ G++ LF +M + V PD +Y+
Sbjct: 426 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 485
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G ++ ++++A K+ M+ L+P VT+ TLI G C R+ +AL L ++ M
Sbjct: 486 TLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKE-MES 544
Query: 221 YNVKPDAQVFASLIKGL 237
V PD + +++GL
Sbjct: 545 SGVSPDIITYNIILQGL 561
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V S+ T++N G + + +++++ +SPD +Y+ ++ + ++ A +V
Sbjct: 196 VVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLT 255
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKG 236
M+K + P T+ ++++G C + EA+ K++ D + ++PD + +L++G
Sbjct: 256 SMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQG 315
Query: 237 LCAVGELSLALGFKEEMVRNKIEMD 261
G L + MVRN I D
Sbjct: 316 YATKGALVGMHALLDLMVRNGIHPD 340
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---CGKIDRMTDLFQIMEKYVSPDACSYN 160
E A VFDE+ ++ N L + + R + + V+P +Y
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYA 91
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ C + RL+ + ++K+ + +TF L+ GLC + R +A+ + M
Sbjct: 92 ILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTE 151
Query: 221 YNVKPDAQVFASLIKGLC 238
+ PD L+KGLC
Sbjct: 152 LSCMPDVFSCTILLKGLC 169
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 2/165 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I A DE ++L + + P + + +I+ Y + + AL +
Sbjct: 480 DIITYSTLIDGYCLAGKMDEAMKLLSGMV-SVGLKPNTVTYRTLINGYCKISRMGDALVL 538
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EM S V + ++N +L + + +L+ +I E + +YNI++HG
Sbjct: 539 FKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCK 598
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
++ +DA ++F + L+ TF +I L R EA L
Sbjct: 599 NKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDL 643
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 15/182 (8%)
Query: 95 SFYGRARLLEH--------ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM----T 142
S YG R L A+ ++ M+ + + +T + C + DR+
Sbjct: 49 SIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFA 108
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK-VFDEMLKRRLQPTLVTFGTLIYGL 201
L +++K +A ++ L+ G +R DA V M + P + + L+ GL
Sbjct: 109 ALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGL 168
Query: 202 CLELRVDEALKLKEDMM--RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
C E R EAL+L M R PD + ++I G G+ A EM+ +I
Sbjct: 169 CDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRIS 228
Query: 260 MD 261
D
Sbjct: 229 PD 230
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 114/227 (50%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP +++ Y +I L R D+ + +Q+ D VVP++ + C +
Sbjct: 420 NEMRDHGVKP---HVVTYMTVIAALCRIGKMDDAMEKFNQMI-DQGVVPDKYAYHCLIQG 475
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + ++ + F +++N + G++ ++F + + + P
Sbjct: 476 FCTHGSLLK-AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHP 534
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
DA YN+LM G + ++E A +VFD M+ ++P +V +GTL+ G C R+DE L L
Sbjct: 535 DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLF 594
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP ++ +I GL G A EM + I M+
Sbjct: 595 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 640
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L +A+ D+ + L Q+ + V+P+ + N+I Y + A++V
Sbjct: 255 DLVTYSSVVHALCKARAMDKAEAFLRQMVNKG-VLPDNWTYNNLIYGYSSTGQWKEAVRV 313
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR----------------------------- 140
F EM ++ V + NTL+ ++ GKI
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYAT 373
Query: 141 ------MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
MTDLF +M ++PD ++N+L+ L+ A +F+EM ++P +VT
Sbjct: 374 KGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVT 433
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I LC ++D+A++ K + M V PD + LI+G C G L A E+
Sbjct: 434 YMTVIAALCRIGKMDDAME-KFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEI 492
Query: 254 VRNKIEMD 261
+ N + +D
Sbjct: 493 MNNGMRLD 500
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQP---LKPFRYNLLHYDLIITKLGRAKMF 67
R S P LA+ LF N + AQ L P Y Y +++ RA
Sbjct: 78 RAPSSAACGSGPALAVALF-----NRAASRAQGPRVLSPTSYT---YAILMDCCTRAHRP 129
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF-DEMSSFNVQRTVKSFN 126
+ QL T + + II +++ + A+ + AL + V S+N
Sbjct: 130 ELALAFFGQLLR-TGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYN 188
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK---YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
LL ++ GK + DL ++M + SPD +YN ++ G + A +F EM+
Sbjct: 189 ILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV 248
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+R + P LVT+ ++++ LC +D+A M+ V PD + +LI G + G+
Sbjct: 249 QRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVN-KGVLPDNWTYNNLIYGYSSTGQW 307
Query: 244 SLALGFKEEMVRNKI 258
A+ +EM R I
Sbjct: 308 KEAVRVFKEMRRQSI 322
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F YN+L L G++ D++ +++ + T P+ + + VI + + + A
Sbjct: 185 FSYNILLKSL--CNQGKSGQADDLLRMMAE--GGTVCSPDVVAYNTVIDGFFKEGDVNKA 240
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHG 165
+F EM + + +++++++A+ +D+ L Q++ K V PD +YN L++G
Sbjct: 241 CDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYG 300
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + ++A +VF EM ++ + P +V TL+ LC ++ EA + D M + P
Sbjct: 301 YSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVF-DTMAMKGQNP 359
Query: 226 DAQVFASLIKGLCAVGEL 243
D + ++ G G L
Sbjct: 360 DVFSYTIMLNGYATKGCL 377
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 38/230 (16%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ + II L + + Q I L + + P+ +++ ++ Y +E AL
Sbjct: 498 RLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLMDGYCLVGKMEKAL 556
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP------------ 154
+VFD M S ++ V + TL+N G+ID LF ++++K + P
Sbjct: 557 RVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 616
Query: 155 -----------------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+ C+Y+I++ G +R ++A +F E+ ++ +
Sbjct: 617 FEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDI 676
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+T T+I G+ RV+EA L + R + P A ++ +I L G
Sbjct: 677 ITLNTMIAGMFQTRRVEEAKDLFASISR-SGLVPCAVTYSIMITNLLKEG 725
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 9/192 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ + DE + ++ + P I++ +I A A
Sbjct: 570 NVVGYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFEAGRTVPAKVK 628
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM+ + +++ +L + D LF+ + V D + N ++ G
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKP 225
+RR+E+A +F + + L P VT+ +I L E V+EA EDM M+ +P
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEA----EDMFSSMQNAGCEP 744
Query: 226 DAQVFASLIKGL 237
D+++ +++ L
Sbjct: 745 DSRLLNHVVREL 756
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 38/231 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++T L +MF+ + +L Q++ + P+ I F +I+ + A+ + A+
Sbjct: 106 SLVTYTILLTALTNQRMFESIPSLLAQVEL-AGIRPDSIFFNALINAFVEAKRMGEAINT 164
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F +M T +FNTL+ GK + +F +M E + P+ +YNIL+
Sbjct: 165 FWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWC 224
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTF--------------------------------- 194
R LE+AW V +M ++P +VT+
Sbjct: 225 DRRNLEEAWGVVGKMRAGGVEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERT 284
Query: 195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
G +I G C E R++EAL+ + M+ + P+ +F +L+KG V +++
Sbjct: 285 WGIIIGGYCRESRLEEALRCVQQ-MKDAGIVPNVVIFNTLLKGFLDVNDMA 334
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +II R +E + + Q+K D +VP +IF ++ + + + M
Sbjct: 285 WGIIIGGYCRESRLEEALRCVQQMK-DAGIVPNVVIFNTLLKGFLDVNDMAAVNNILGLM 343
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
F ++ + +++ LN + G + + +F +++E + PD Y+IL G V +++
Sbjct: 344 EQFGIKPDIVTYSHQLNTFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRAKQP 403
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + +M + P +VTF T+I G C ++ A+++ E M + V P+ + F +
Sbjct: 404 EKAEDLLLQMSHLGVCPNVVTFTTVISGWCSVADMESAMRVYEKMCK-SGVYPNLRTFET 462
Query: 233 LIKG 236
LI G
Sbjct: 463 LIWG 466
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 2/179 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
TRV E + +I Y R LE AL+ +M + V FNTLL L +
Sbjct: 276 TRVRTSERTWGIIIGGYCRESRLEEALRCVQQMKDAGIVPNVVIFNTLLKGFLDVNDMAA 335
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ ++ +ME++ + PD +Y+ ++ + KVFD+M++ ++P + L
Sbjct: 336 VNNILGLMEQFGIKPDIVTYSHQLNTFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAK 395
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
G + ++A L M + V P+ F ++I G C+V ++ A+ E+M ++ +
Sbjct: 396 GFVRAKQPEKAEDLLLQMSHL-GVCPNVVTFTTVISGWCSVADMESAMRVYEKMCKSGV 453
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 94/208 (45%), Gaps = 1/208 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I G +E Q++ + + + P + ++ + R LE A V +M
Sbjct: 180 FNTLIKGYGIVGKPEESQRVFDMMGIEGSIKPNLTTYNILVKAWCDRRNLEEAWGVVGKM 239
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ V+ + ++NT+ +A + R +L ++ V ++ I++ G RLE
Sbjct: 240 RAGGVEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCRESRLE 299
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + +M + P +V F TL+ G L++ A+ +M + +KPD ++
Sbjct: 300 EALRCVQQMKDAGIVPNVVIFNTLLKGF-LDVNDMAAVNNILGLMEQFGIKPDIVTYSHQ 358
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++G ++ + ++M+ IE D
Sbjct: 359 LNTFSSLGHMAKCMKVFDKMIEAGIEPD 386
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A VF + + ++ ++ LL A+ + + L Q+ + PD+ +N L+
Sbjct: 90 QAHSVFKHLMEEGHKPSLVTYTILLTALTNQRMFESIPSLLAQVELAGIRPDSIFFNALI 149
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ V ++R+ +A F +M PT TF TLI G + + +E+ ++ + M ++
Sbjct: 150 NAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGIEGSI 209
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KP+ + L+K C L A G +M +E D
Sbjct: 210 KPNLTTYNILVKAWCDRRNLEEAWGVVGKMRAGGVEPD 247
>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
Length = 439
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 5/217 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRAR 101
L P +++ ++ ++ A FD + Q+ H T ++P + +IS +
Sbjct: 134 LPPKHKSVMTFNALLAAYVDASDFDALTTTFQQIPASHPT-IIPTVYSYNILISALCQKP 192
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
L AL V M V + SFN LLN D ++++M E+ + PD SYN
Sbjct: 193 ELSAALDVIALMEKRGVSPDIISFNILLNGFYNNDSFDDAEKVWEMMKERNIEPDEKSYN 252
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G V R+EDA + + M K +P V++ LI G C E R++EA K+ +D+++
Sbjct: 253 AKLRGLVSQGRVEDAVALIERMQKEGPKPDSVSYNELIRGYCKEGRLNEAKKVYDDLIK- 311
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
P+ F +L+ L GEL AL E+ K
Sbjct: 312 NECAPNRGTFHTLVPHLVEAGELDRALSCCHEIFSRK 348
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 9/213 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC-NVISFYGRARLLEHALQVFDE 112
Y++ + +L D + I+ K + + F ++ G A + HA +F
Sbjct: 76 YEVAVARLASFGRHDAIAAIIDSQK--PFIEASSVGFAARLVRLCGGASMPSHAAAIFHG 133
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGCVVS 169
+ ++V +FN LL A + D +T FQ + + P SYNIL+
Sbjct: 134 LPP--KHKSVMTFNALLAAYVDASDFDALTTTFQQIPASHPTIIPTVYSYNILISALCQK 191
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A V M KR + P +++F L+ G D+A K+ E MM+ N++PD +
Sbjct: 192 PELSAALDVIALMEKRGVSPDIISFNILLNGFYNNDSFDDAEKVWE-MMKERNIEPDEKS 250
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + ++GL + G + A+ E M + + D+
Sbjct: 251 YNAKLRGLVSQGRVEDAVALIERMQKEGPKPDS 283
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 113/208 (54%), Gaps = 11/208 (5%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+++ L + ++ +++L L +VP E+I+ +++ Y + ++ A+ ++M S
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLVEHG-LVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG----CVVSR 170
++ +FN++++ ID+ + + M K ++P +YNIL+ G CV SR
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+++ +EM + +P ++++G+LI LC + ++ EA + DM+ V P+A ++
Sbjct: 366 ----CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVG-RGVLPNANIY 420
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
LI G C VG+L AL F +EM +N I
Sbjct: 421 NMLIDGSCTVGKLREALRFFDEMSKNGI 448
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 12/218 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E++ L+P N + ++ +I K +M D+ ++ + ++ + P + +I YGR
Sbjct: 304 ESRGLRP---NCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKG-IAPSVETYNILIDGYGR 359
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACS 158
+ Q+ +EM + V S+ +L+N + GKI + L ++ + V P+A
Sbjct: 360 LCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANI 419
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+ G +L +A + FDEM K + T+VT+ +LI GLC ++ EA E+M
Sbjct: 420 YNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEA----EEMF 475
Query: 219 RVYNVK---PDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ PD + SLI G G L E M
Sbjct: 476 FLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETM 513
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
++++ +KM +V ++ ++ + R+ P ++ ++ ++ L +F EM
Sbjct: 1 MLLSVCSESKMHSQVSELYDFMRQEGRL-PSFGYVRMIVESLVESKKFDNVLDLFKEMVG 59
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
+ + + A + G + +LF+ M++ V P+ YN+L+ G +R+ D
Sbjct: 60 LGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRD 119
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A K+F EM R L P VTF TLI G C VD A+ L+E M + V+P F SL+
Sbjct: 120 AEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKK-EKVEPSIITFNSLL 178
Query: 235 KGLC 238
GLC
Sbjct: 179 SGLC 182
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 10/209 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + E + +L + V+P I+ +I L AL+
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMV-GRGVLPNANIYNMLIDGSCTVGKLREALRF 439
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEMS + T+ ++N+L+ + GK+ ++F I PD +YN L+ G
Sbjct: 440 FDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSN 499
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKP 225
+ + ++++ M K L+PT+ TF LI G E +KLKE + M N+ P
Sbjct: 500 AGNSQKCLELYETMKKLGLKPTINTFHPLISGC-----SKEGIKLKETLFNEMLQMNLSP 554
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D V+ ++I G + A ++EMV
Sbjct: 555 DRVVYNAMIHCYQETGHVQKAFSLQKEMV 583
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 102/199 (51%), Gaps = 5/199 (2%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ K+G+ K +E+ ++ H P+ I + ++IS Y A + L++++ M
Sbjct: 462 LCKMGKLKEAEEMFFLITSTGH----CPDVITYNSLISGYSNAGNSQKCLELYETMKKLG 517
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177
++ T+ +F+ L++ G + T ++++ +SPD YN ++H + ++ A+
Sbjct: 518 LKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFS 577
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ EM+ ++P T+ +LI G E ++ E L +D M+ + P+A ++ LI+G
Sbjct: 578 LQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDD-MKAKGLIPEADTYSLLIQGH 636
Query: 238 CAVGELSLALGFKEEMVRN 256
C + + + A + EM+ N
Sbjct: 637 CDLKDFNGAYVWYREMLEN 655
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 92/190 (48%), Gaps = 17/190 (8%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-------LEHALQ 108
+I+ L +K FD V + ++ P++++ YGRA L L+ A++
Sbjct: 36 MIVESLVESKKFDNVLDLFKEMV-GLGFRPDKLV-------YGRAMLAAVKLGDLKLAME 87
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+F+ M V V +N L+ + +I LF M + + P+ ++N L+ G
Sbjct: 88 LFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYC 147
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ ++ A + + M K +++P+++TF +L+ GLC R++EA + + ++ PD
Sbjct: 148 KAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEA-RCMLNEIKCNGFVPDG 206
Query: 228 QVFASLIKGL 237
++ + GL
Sbjct: 207 FTYSIIFDGL 216
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ +++ +I Y ++ A + EM V+ K++N+L+ L GK+ DL
Sbjct: 554 PDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDL 613
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M+ K + P+A +Y++L+ G + A+ + EML+ P + L GL
Sbjct: 614 VDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRK 673
Query: 204 ELRVDEALKLKEDMM 218
+ R+ EA + +M+
Sbjct: 674 DGRLQEAQSICSEMI 688
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 112/211 (53%), Gaps = 10/211 (4%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L F + + +L ++K + + + + ++ +Y + + AL V ++M
Sbjct: 230 NILLNSLCTNGEFRKAEDMLQKMK--SCHISNSVTYNTILHWYVKKGRFKAALCVLEDME 287
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHGCVVSR 170
+VQ V ++N +++ + +I R T F ++++ ++PD C+YN L++G
Sbjct: 288 RDSVQADVYTYNIMIDKLC---RIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREG 344
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
++ A VF+ ML++ L P++ T+ T+I G C R+D+AL + + M++ V P +
Sbjct: 345 KINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSE-MQITGVMPSELTY 403
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++L+ G C V L A+ E++ I ++
Sbjct: 404 SALLNGYCKVSMLGPAIYLMEDLKSRGITIN 434
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 3/203 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
L +D++IT Q+ + +K + P F +I+ R L+H+ +V
Sbjct: 857 LVFDILITAFSEKSKMHNALQVFNCMKW-LHMSPSSKTFSAMINGLIRKGYLDHSHKVLH 915
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
EM +Q + L+NA G+IDR L + M+ + P + + ++ G
Sbjct: 916 EMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCG 975
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+LE+A VF M++ + PT+ TF TL++ LC E ++ +AL LK +M + ++ D +
Sbjct: 976 KLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKR-LMELCRLRVDVVSY 1034
Query: 231 ASLIKGLCAVGELSLALGFKEEM 253
LI GLC +S AL EM
Sbjct: 1035 NVLITGLCKDKHISDALDLYGEM 1057
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + R E ++IL +++ + ++P ++++ +I +Y +A ++ AL+
Sbjct: 469 DVITYSALINGMCRMAKMHETKEILSRMQ-KSGILPNDVLYTTLICYYCKAGYVKEALKH 527
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F ++ + N LL+A G I Q M + +S D+ S+N ++
Sbjct: 528 FVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRIIDSYCH 587
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A+ V+D+M++ P + T+ L+ GLC + +A + ++ + D +
Sbjct: 588 RGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDI-PFAIDEK 646
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
F +L+ G+C G L AL E+M++N
Sbjct: 647 TFNALLLGICRYGTLDEALDLCEKMIKN 674
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I R + D+ IL +++ T V+P E+ + +++ Y + +L A+ + +++
Sbjct: 368 YTTMIDGYCRNRRIDKALSILSEMQ-ITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDL 426
Query: 114 SS--FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
S + +T+++ L++ G+I + + + M E + PD +Y+ L++G
Sbjct: 427 KSRGITINKTMRTI--LIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMA 484
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
++ + ++ M K + P V + TLI C V EALK D+ R + + +
Sbjct: 485 KMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYR-RGLVANPVIH 543
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L+ G ++ A F++ M R I D+
Sbjct: 544 NALLHAFYREGMITEAEHFRQYMSRMNISFDS 575
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNA 131
++ Q+ + VVP+ + + +++ ++ A VF E+ + ++N+L+N
Sbjct: 701 VILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNG 760
Query: 132 MLTCGKIDR----MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L ++ M+D++Q V P++ SYNILMHG V + + ++ M+++ +
Sbjct: 761 YLKSRNVNTIKRMMSDMYQ---NEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGI 817
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
+P VT+ LI GL +D A+K E M+ + + PD VF LI ++ AL
Sbjct: 818 RPDNVTYRLLILGLSECGLIDIAVKFLEKMV-LEGIFPDRLVFDILITAFSEKSKMHNAL 876
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V + N LLN++ T G+ + D+ Q M+ ++ +YN ++H V R + A V ++
Sbjct: 226 VTTCNILLNSLCTNGEFRKAEDMLQKMKSCHISNSVTYNTILHWYVKKGRFKAALCVLED 285
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M + +Q + T+ +I LC R A L + MR ++ PD + +LI G G
Sbjct: 286 MERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKR-MRKDDLTPDECTYNTLINGFFREG 344
Query: 242 ELSLALGFKEEMVRNKI 258
+++ A M+R +
Sbjct: 345 KINHARYVFNHMLRQNL 361
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
K+FN LL + G +D DL + M K PD +Y IL+ G ++ A +
Sbjct: 646 KTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQM 705
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
ML++ + P V + L+ GL E +V A + +++ + D + SL+ G
Sbjct: 706 MLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNG 760
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 100/190 (52%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y I+ ++ ++ +L +++H ++ P + + +I + L+ AL
Sbjct: 229 NQFTYGPILNRMCKSGNTASALDLLRKMEH-RKIKPHVVTYTIIIDNLCKDGRLDDALSF 287
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + + G+ D L + M + ++P+ +++ L+ V
Sbjct: 288 FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A +++EM+ R ++P +T+ +LIYGLC + R+DEA ++ D+M PD
Sbjct: 348 EGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMM-DLMVSKGCDPDIW 406
Query: 229 VFASLIKGLC 238
+ LI G C
Sbjct: 407 TYNILINGFC 416
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 43/259 (16%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN--VISFY 97
E + +KP +++ Y +II L + D+ ++ +T+ + + N + SF
Sbjct: 257 EHRKIKP---HVVTYTIIIDNLCKDGRLDDALSFFSEM--ETKGIKANVFTYNSLIGSFC 311
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDA 156
R + A Q+ +M + + V +F+ L+++++ GK+ DL+ +++ + + P+
Sbjct: 312 SFGRWDDGA-QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNT 370
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L++G +RL++A ++ D M+ + P + T+ LI G C +VD+ ++L
Sbjct: 371 ITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRK 430
Query: 217 M----------------------------------MRVYNVKPDAQVFASLIKGLCAVGE 242
M M V P +A L+ GLC GE
Sbjct: 431 MSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGE 490
Query: 243 LSLALGFKEEMVRNKIEMD 261
L ALG ++M + K+E+D
Sbjct: 491 LEEALGILDQMHKCKMELD 509
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 97/191 (50%), Gaps = 5/191 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
N++ + +I L + E + + +++ TR + P I + ++I + L+ A Q
Sbjct: 334 NVVTFSALIDSLVKEGKLTEAKDLYNEMI--TRGIEPNTITYNSLIYGLCNDKRLDEANQ 391
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+ D M S + ++N L+N ++D LF+ M + + D +Y+ L+ G
Sbjct: 392 MMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFC 451
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
SR+L A KVF EM+ + + P ++T+ L+ GLC ++EAL + + M + ++ D
Sbjct: 452 QSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKC-KMELDI 510
Query: 228 QVFASLIKGLC 238
++ +I G+C
Sbjct: 511 GIYNIIIHGMC 521
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ +I L K DE Q++ L P+ + +I+ + +A+ ++ +++
Sbjct: 369 NTITYNSLIYGLCNDKRLDEANQMM-DLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRL 427
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +MS + +++TL+ K+ +FQ M + V P +Y IL+ G
Sbjct: 428 FRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCD 487
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE+A + D+M K +++ + + +I+G+C +VD+A L + VK D Q
Sbjct: 488 NGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPS-KGVKRDIQ 546
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ ++ GLC LS A +M + E D
Sbjct: 547 SYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDG 580
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ I +++ + A+ + M + Q ++ +LN M G D
Sbjct: 192 VPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALD 251
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L + ME + + P +Y I++ RL+DA F EM + ++ + T+ +LI C
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R D+ +L DM+ + P+ F++LI L G+L+ A EM+ IE
Sbjct: 312 SFGRWDDGAQLLRDMI-TRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIE 367
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P I F + R + + L + +M + + + N ++N K+
Sbjct: 84 SRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGF 143
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ + +I + P+ ++N L++G + R+ +A ++ D M+ + P L+T T++
Sbjct: 144 AFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVN 203
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLCL+ RV EA+ L MM +P+ + ++ +C G + AL +M KI+
Sbjct: 204 GLCLKDRVSEAVDLIARMM-ANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIK 262
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ ++ AL + +M ++ V ++ +++ + G++D
Sbjct: 228 PNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSF 287
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME K + + +YN L+ R +D ++ +M+ R++ P +VTF LI L
Sbjct: 288 FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA L +M+ ++P+ + SLI GLC
Sbjct: 348 EGKLTEAKDLYNEMI-TRGIEPNTITYNSLIYGLC 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
LE AL + D+M ++ + +N +++ M K+D LF + K V D SYNI
Sbjct: 491 LEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNI 550
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G L +A +F +M + +P T+ TLI + +++L E+M R
Sbjct: 551 MLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRC- 609
Query: 222 NVKPDAQVFASLIKGLCAVGEL 243
DA ++ + + GEL
Sbjct: 610 GFSSDAST-VKIVMDMLSSGEL 630
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y+ ++T L + + +L + R+ P I F +I + + L A
Sbjct: 220 RPNVVTYNALVTGLCEIGRWGDAAWLLRDMM-KRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGC 166
++++ M +V V ++ +L+N + G +D +F +ME+ P+ Y L+HG
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S+R+ED K+F EM ++ + +T+ LI G CL R D A ++ + M PD
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV-FNQMSSRRAPPD 397
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + L+ GLC G++ AL E M K EMD
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYM--RKREMD 430
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L + DE +Q+ + ++ + P E+I+ +I + +++ +E +++
Sbjct: 292 DVFTYGSLINGLCMYGLLDEARQMFYLMERNG-CYPNEVIYTTLIHGFCKSKRVEDGMKI 350
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EMS V ++ L+ G+ D ++F Q+ + PD +YN+L+ G
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++E A +F+ M KR + +VT+ +I G+C +V++A L + +KP+
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFS-KGMKPNVI 469
Query: 229 VFASLIKGLCAVG 241
+ ++I G C G
Sbjct: 470 TYTTMISGFCRRG 482
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F++ + ++ H +R +P I F ++S + + + +F++M + + + N
Sbjct: 64 FNDALDLFTRMVH-SRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122
Query: 127 TLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+++ + + R + L ++M+ PD ++ L++G R+EDA +FD++L
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+ TLI LC ++ A++L + M +P+ + +L+ GLC +G
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVEL-FNQMGTNGSRPNVVTYNALVTGLCEIGRWGD 241
Query: 246 ALGFKEEMVRNKIE 259
A +M++ +IE
Sbjct: 242 AAWLLRDMMKRRIE 255
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + R L HA+++F++M + + V ++N L+ + G+ L
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +M++ + P+ ++ L+ V +L +A ++++ M++ + P + T+G+LI GLC+
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEA ++ M R P+ ++ +LI G C
Sbjct: 306 YGLLDEARQMFYLMER-NGCYPNEVIYTTLIHGFC 339
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I ++K ++ +I +++ VV I + +I Y + A +VF++M
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKG-VVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
SS ++++N LL+ + GK+++ +F+ M K + + +Y I++ G ++
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKV 449
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKED 216
EDA+ +F + + ++P ++T+ T+I G C + EA K+KED
Sbjct: 450 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y I+ A F + + +++ + V+P +++ +I+ Y + +
Sbjct: 518 LKP---NAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKEKV 573
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
A + M + K++ L+N + K+D ++F+ M K ++PD SY +L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
++G ++ A +FDEM++ L P ++ + L+ G C R E K KE D M V
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC---RSGEIEKAKELLDEMSV 690
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ P+A + ++I G C G+L+ A +EM
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 723
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A ++F EM + V S+ L+N G + + + +F +++E+ ++P+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G S +E A ++ DEM + L P VT+ T+I G C + EA +L D M++
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF-DEMKLK 726
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ PD+ V+ +L+ G C + ++ A+
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAI 752
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + D+ ++I +++ + P+ + +I+ + + ++ A +FDEM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ V +N LL G+I++ +L M K + P+A +Y ++ G S L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+A+++FDEM + L P + TL+ G C V+ A+ +
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 41/243 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++++ R+ ++ +++L ++ + P + +C +I Y ++ L A ++
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 110 FDEM-------SSF-------------NVQRTV--------------KSFNTLLNAMLTC 135
FDEM SF +V+R + FN L+N +
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779
Query: 136 GKIDRMTDLFQIM-----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK + T++ + +++ P+ +YNI++ LE A ++F +M L PT
Sbjct: 780 GKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++T+ +L+ G R E + ++ + ++PD +++ +I G + AL
Sbjct: 840 VITYTSLLNGYDKMGRRAEMFPVFDEAIAA-GIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 251 EEM 253
++M
Sbjct: 899 DQM 901
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P +Y YD++I L + K ++ + +L ++ V + + +I + R
Sbjct: 271 KGLVPLKYT---YDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGR 326
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
+ A + EM S + ++ + M G +++ LF M + P A +Y
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G + + +++ EM KR + + T+GT++ G+C +D A + ++M+
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI-A 445
Query: 221 YNVKPDAQVFASLIK 235
+P+ ++ +LIK
Sbjct: 446 SGCRPNVVIYTTLIK 460
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I R K + ++L ++K +V + V+ + L+ A + EM
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + TL+ L + D M L ++ E+ ++PD YN L+ G ++R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A EM++ L+P T+G I G A K ++ MR V P+ +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE-MRECGVLPNKVLCTG 562
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C ++ A MV I DA
Sbjct: 563 LINEYCKKEKVIEACSAYRSMVDQGILGDA 592
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 41/251 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I + + I ++ + + P II+ ++ + R+ +E A ++
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEMS + ++ T+++ G + LF M+ K + PD+ Y L+ GC
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 169 SRRLEDAWKVF--------------------------------------DEMLKRRLQPT 190
+E A +F D R +P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ +I LC E ++ A +L M N+ P + SL+ G +G +
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 251 EEMVRNKIEMD 261
+E + IE D
Sbjct: 864 DEAIAAGIEPD 874
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A PF L+++ + K G+ ++ EV L D P ++ + +I + +
Sbjct: 763 ASSTAPFN-ALINW---VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LE A ++F +M + N+ TV ++ +LLN D+M
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGY------DKM------------------- 853
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
RR E + VFDE + ++P + + +I E +AL L + M
Sbjct: 854 --------GRRAE-MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 221 YNVKPDAQVFAS----LIKGLCAVGELSLALGFKEEMVR 255
V ++ S L+ G VGE+ +A E MVR
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVR 943
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L + + +++ HQ+++ ++P I + ++++ Y + V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI-----LM 163
FDE + ++ ++ ++NA L G + L Q+ K D C +I L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
G +E A KV + M++ + P T LI C+
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCI 962
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 35/205 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD- 143
P +I+ +I + + A++V EM + + +N+L+ + ++D
Sbjct: 450 PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSF 509
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++E + P+A +Y + G + + A K EM + + P V LI C
Sbjct: 510 LVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCK 569
Query: 204 ELRVDEALKLKEDM----------------------------------MRVYNVKPDAQV 229
+ +V EA M MR + PD
Sbjct: 570 KEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ LI G +G + A +EMV
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMV 654
>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
Length = 484
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I L + D + +L HD V P+ + ++ +A LE A++V
Sbjct: 147 NVATYNTVINGLCKFGKIDWAVHLFTRLPHDL-VDPDGFTYSTLVHGLCQAERLEAAIKV 205
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CV 167
+D M N ++N + + ++D ++ + M ++ P +YN +++G C
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQ 265
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+E+A+++F +M+ P VT+GT+I GL V L+L + M + + PD
Sbjct: 266 YKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA-GLSPDG 324
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI V +L A ++ RN + D
Sbjct: 325 YAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 40/217 (18%)
Query: 84 VPEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+P ++ NV+ Y + AL F +M + V ++NT++N + GKID
Sbjct: 110 IPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAV 168
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML------------------ 183
LF ++ V PD +Y+ L+HG + RLE A KV+D ML
Sbjct: 169 HLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGF 228
Query: 184 -----------------KRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKP 225
+RR +P++VT+ +I G+C + R++EA +L + M+ + P
Sbjct: 229 CKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGS-DCPP 287
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+A + ++I GL + E+ L + M + + D
Sbjct: 288 NAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDG 324
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 7/192 (3%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
EV + + Q + VV I V + R +E A ++F +M + ++ T+
Sbjct: 239 EVLKTMIQRRCKPSVVTYNCIINGVCQYKNR---IEEAYRLFQQMVGSDCPPNAVTYGTM 295
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + ++ R +LF+ M K +SPD +Y+ L++ V R+L++A + + + +
Sbjct: 296 ILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHV 355
Query: 188 QPTLVTFGTLIYGLCL--ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P + + TLI G C + RVDEAL L ++M + V P+ + +++GLC G
Sbjct: 356 GPDVYMYTTLISGYCRARKPRVDEALLLFQNM-KDRRVWPNVITYNIVLRGLCKTGRFDE 414
Query: 246 ALGFKEEMVRNK 257
A +EM + K
Sbjct: 415 AYQIFQEMFKVK 426
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 4/214 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
+R+++ Y ++ L RA+ E + +L R P F +I + R
Sbjct: 40 YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCR--PSLYSFTIIIQCFCNVRNPGR 97
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A + M S + V ++N +L G++ R F M K P+ +YN +++G
Sbjct: 98 AWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVING 157
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+++ A +F + + P T+ TL++GLC R++ A+K+ DMM N
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV-YDMMLEANYDG 216
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
DA + ++ G C + AL + M++ + +
Sbjct: 217 DAGAYNAMADGFCKERRVDEALEVLKTMIQRRCK 250
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 4/191 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II + + K E L Q + P + + +I + ++ L++
Sbjct: 252 SVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLEL 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F MS + ++++L+ A + K+D + Q +V PD Y L+ G
Sbjct: 312 FKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCR 371
Query: 169 SR--RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R R+++A +F M RR+ P ++T+ ++ GLC R DEA ++ ++M +V P+
Sbjct: 372 ARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKV-KCSPN 430
Query: 227 AQVFASLIKGL 237
F + G+
Sbjct: 431 RMTFKVMTMGM 441
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
N + Y +I LG +K++ EVQ+ L K ++ + P+ + ++I + + R L+ A
Sbjct: 288 NAVTYGTMI--LGLSKIY-EVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAK 344
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGK--IDRMTDLFQIM-EKYVSPDACSYNILMH 164
+ + + +V V + TL++ K +D LFQ M ++ V P+ +YNI++
Sbjct: 345 SILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLR 404
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
G + R ++A+++F EM K + P +TF + G+ + D+ ++ DM+
Sbjct: 405 GLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDMV 458
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
RAR A++ F + + ++ SF ++ R M + PD
Sbjct: 56 RARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVT 115
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL----KL 213
+YN+++ G R+ A F +M K +P + T+ T+I GLC ++D A+ +L
Sbjct: 116 AYNVVLKGYCDLGRVGRALIKFGKMGKT-CKPNVATYNTVINGLCKFGKIDWAVHLFTRL 174
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D+ V PD +++L+ GLC L A+ + M+ + DA
Sbjct: 175 PHDL-----VDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDA 218
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
+LG+ + ++ +IL + VP+ I + +IS Y +A + +AL V D MS V
Sbjct: 149 RLGKTRKAAKILEILE----GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201
Query: 120 RTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
V ++NT+L ++ GK+ + M L +++++ PD +Y IL+ + A K+
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM R P +VT+ L+ G+C E R+DEA+K DM +P+ +++ +C
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMC 320
Query: 239 AVGELSLALGFKEEMVR 255
+ G A +M+R
Sbjct: 321 STGRWMDAEKLLADMLR 337
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLL 103
K F +++ ++++I L R + IL ++ +H + P + + ++ + + + +
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ--PNSLSYNPLLHGFCKEKKM 395
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A++ + M S + ++NT+L A+ GK++ ++ Q+ K SP +YN +
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + A K+ DEM + L+P +T+ +L+ GL E +VDEA+K + R+
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM-G 514
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGF 249
++P+A F S++ GLC + A+ F
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDF 541
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 3/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + N++ +++I+ + + + +++L + P + F +I+F R L
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGL 359
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L A+ + ++M Q S+N LL+ K+DR + + M + PD +YN
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ ++EDA ++ +++ + P L+T+ T+I GL + +A+KL D MR
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL-DEMRAK 478
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KPD ++SL+ GL G++ A+ F E R I +A
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ I+ L + + ++L + L+ D P+ I + +I R + HA++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD--CYPDVITYTILIEATCRDSGVGHAMK 260
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+ DEM V ++N L+N + G++D M P+ ++NI++
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R DA K+ +ML++ P++VTF LI LC + + A+ + E M + + +P++
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQ-HGCQPNS 379
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ G C ++ A+ + E MV
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMV 406
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V + LE+ +K + M+ P ++ TLI G C + +A K+ E ++ PD
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE-ILEGSGAVPD 171
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ +I G C GE++ AL + M
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM 198
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDE 181
N L M+ G+++ + F+ +E V PD L+ G + A K+ +
Sbjct: 106 NNHLRQMVRTGELE---EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ P ++T+ +I G C ++ AL + + M +V PD + ++++ LC G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSG 218
Query: 242 ELSLALGFKEEMVR 255
+L A+ + M++
Sbjct: 219 KLKQAMEVLDRMLQ 232
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+R++ Y +I LG+ + F V ++ +++ + +F ++ + AR+++ A
Sbjct: 118 YRHSYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKA 177
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------- 145
++V DEM + + F LL+A+ G + LF
Sbjct: 178 IEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGW 237
Query: 146 --------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
QI E PD YN L+ G + ++ DA+ + EM ++ +P +
Sbjct: 238 CREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNV 297
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
++F TLI LC + +++EA+++ +M DA + +LI G C G++S +
Sbjct: 298 MSFTTLIQALCAKKKMEEAMRVFFEMQSC-GCPADAVTYTTLISGFCKWGKISKGYELLD 356
Query: 252 EMVR 255
M++
Sbjct: 357 NMIQ 360
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 10/217 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F L H+ ++ R E + +L Q++ + P+ +++ N+++ Y A + A
Sbjct: 223 FTPTLKHFTSLLYGWCREGKLMEAKYVLVQIR-EAGFEPDIVVYNNLLTGYAAAGKMVDA 281
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHG 165
+ EM + V SF TL+ A+ K++ +F M+ P DA +Y L+ G
Sbjct: 282 YDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISG 341
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ +++ D M+++ P +T+ ++ + ++E ++L E+M ++ P
Sbjct: 342 FCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKI-GCTP 400
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D ++ +I+ C +GE+ +E VR EM+A
Sbjct: 401 DLNIYNIVIRLACKLGEI-------KEGVRVWNEMEA 430
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + ++++ + + LE +++ +EM + +N ++ G+I
Sbjct: 364 IPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVR 423
Query: 144 LFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
++ ME +SP ++ I++HG + R L +A + F EM+ R L + +GTL L
Sbjct: 424 VWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLL-SAPQYGTLKELLN 482
Query: 203 LELRVDEALKLKEDMMRVYNVKP-DAQVFASLI 234
LR E L++ +D+ K D V+A I
Sbjct: 483 SLLRA-EKLEMSKDVWSCIMTKGCDLNVYAWTI 514
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 37/208 (17%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ ++T A + +L +++ P + F +I + +E A
Sbjct: 258 FEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRK-ECEPNVMSFTTLIQALCAKKKMEEA 316
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------- 145
++VF EM S ++ TL++ GKI + +L
Sbjct: 317 MRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAA 376
Query: 146 -----------QIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
++ME+ +PD YNI++ +++ +V++EM L P
Sbjct: 377 HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPG 436
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMM 218
L TF +I+G + + EA + ++M+
Sbjct: 437 LDTFVIMIHGFLSQRCLVEACEFFKEMV 464
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++ I L ++ D+ ++I L P+ +C +I Y A + A +
Sbjct: 708 NSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRG-FSPDNFTYCTLIHGYSAAGNVNDAFSL 766
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEM + + ++N L+N + G +DR LF + K ++P+ SYNIL+ G
Sbjct: 767 RDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCK 826
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A + ++MLK + P+L+T+ LIYG C + + +A L ++M ++ + A+
Sbjct: 827 NGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAK 886
Query: 229 VFASLIKGLCAVGEL 243
F L++G GE+
Sbjct: 887 -FVKLVEGHVKCGEV 900
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 108 QVFDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG 165
DE S SF++ +V +N + + GK+D +F ++ + SPD +Y L+HG
Sbjct: 695 DTLDESSKSFSLPNSV-VYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHG 753
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ + DA+ + DEMLKR L P ++T+ LI GLC +D A KL D + + + P
Sbjct: 754 YSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLF-DKLHLKGLAP 812
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ + LI G C G AL + +M++ I
Sbjct: 813 NVISYNILIDGYCKNGNTREALDLRNKMLKEGIS 846
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 128/301 (42%), Gaps = 63/301 (20%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
LL+L+ +P +L FK + N FR N+ + ++ L RA+M+DE + L
Sbjct: 67 LLKLKFNPIASLHFFKLASKQSN---------FRPNVNSHCKLVHILSRARMYDETRSYL 117
Query: 75 HQL------KHDTRVVPEEII------------FCNVISFYGRARLLEHALQVFDEMSSF 116
++L + + VV E++ F ++ Y ++++AL VFD M
Sbjct: 118 NELVTPSKNNYSSLVVWNELVRVFEDFKFSPTVFDMILKIYCEKGMIKNALHVFDNMGKL 177
Query: 117 NVQRTVKSFNTLL----------NAMLTCGKIDRMT---DLF--QIMEKYVSPDA----- 156
+++S N LL NA+L I+R+ D+F IM D
Sbjct: 178 GCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVA 237
Query: 157 ----------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+YN L+ GCV +E A V M +R + VT LI G
Sbjct: 238 VDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKG 297
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
C + +++EA K+ +M R + D + LI G C V ++ A+ ++EM+ + M
Sbjct: 298 YCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRM 357
Query: 261 D 261
+
Sbjct: 358 N 358
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ ++ L R F++ + H L V P+E+ +C ++ + AL +
Sbjct: 428 NVVTHNSLLKGLCRVGAFEDALHVWH-LMLKRGVTPDEVSYCTLLDLLFKMGEFFRALAL 486
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++++ + R+ +FNT++N K+ + F M E PD +Y L+ G
Sbjct: 487 WNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCK 546
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+E+A+KV ++M K + P++ + +LI GL + E + L +M + + P+
Sbjct: 547 LGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMC-LKGLSPNVV 605
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI G C G L A +M+
Sbjct: 606 TYGTLIAGWCDEGRLDKAFTAYFDMI 631
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 2/200 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
L+I R +E +++L +++ +V +E + +I Y R ++ A+++ DEM +
Sbjct: 293 LLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLN 352
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
++ + N L+N G++ L M + + P++ SY+ LM G +
Sbjct: 353 VGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTK 412
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A V++EML+ +Q +VT +L+ GLC ++AL + M++ V PD + +L+
Sbjct: 413 AISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLK-RGVTPDEVSYCTLL 471
Query: 235 KGLCAVGELSLALGFKEEMV 254
L +GE AL +++
Sbjct: 472 DLLFKMGEFFRALALWNDIL 491
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 100/215 (46%), Gaps = 40/215 (18%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP+ +++ Y + + A+ EM + V ++N+L++ ++ G ++R
Sbjct: 214 IVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAE 273
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV---TFGTLI 198
+ ++M E+ + + + +L+ G +LE+A KV EM R + ++ +G LI
Sbjct: 274 MVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREM--ERSEGMVLDEYAYGVLI 331
Query: 199 YGLCLELRVDEALKLKEDMMRV----------------------------------YNVK 224
G C ++D+A++L+++M+ V ++++
Sbjct: 332 DGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLE 391
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
P++ +++L+ G C G ++ A+ EM+R I+
Sbjct: 392 PESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQ 426
>gi|255555097|ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542431|gb|EEF43973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 4/217 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR Y+ I +L AK F+ +++IL K + + +E +I YG++ + +++
Sbjct: 54 FRTKTGIYEETIRRLAIAKRFNWIEEILEDQKK-YKDIHKEGYNARLIRLYGKSNMFDNS 112
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMH 164
+VFDEM N +RTV SFN LL A +T K D + LF+ + K + PD SYN ++
Sbjct: 113 RKVFDEMPDRNCKRTVVSFNALLAACVTSKKFDEVDGLFRKLPKELEIKPDTVSYNTVIK 172
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G L+ A + EM + P L+TF TL+ G + ++ M++ ++
Sbjct: 173 GYCEMGALDKAISLLVEMEMKGNPPDLITFNTLLNGFYSNGLFVDGERIWSQMVQ-KSIV 231
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + + + + GL V A+ +EM I+ D
Sbjct: 232 PDIRSYNAKLLGLALVKRTKDAVLLLQEMKSKGIKPD 268
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 2/221 (0%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + + ++ ++ ++ +K FDEV + +L + + P+ + + VI Y
Sbjct: 120 PDRNCKRTVVSFNALLAACVTSKKFDEVDGLFRKLPKELEIKPDTVSYNTVIKGYCEMGA 179
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYNI 161
L+ A+ + EM + +FNTLLN + G +D Q+++K + PD SYN
Sbjct: 180 LDKAISLLVEMEMKGNPPDLITFNTLLNGFYSNGLFVDGERIWSQMVQKSIVPDIRSYNA 239
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK-EDMMRV 220
+ G + +R +DA + EM + ++P +++F LI G E ++EA E
Sbjct: 240 KLLGLALVKRTKDAVLLLQEMKSKGIKPDVISFNALIKGFVKEENLEEAKYWYCETRNSG 299
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD F +LI +C G+L A ++++ K +D
Sbjct: 300 GDCGPDKFTFTTLIPFVCEKGDLRFAFELSKDVISRKCLVD 340
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
+A L+ + +V+D + + V F+T++NA + D LF MEK V+P+
Sbjct: 233 KANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVV 292
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN ++HG S RL++A++ ++M+K ++ P+L+T+ I GL ++DEA + ++M
Sbjct: 293 TYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEM 352
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ V P+ V+ +LI G C +G +S AL +++M+ I
Sbjct: 353 SELGFV-PNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGIS 393
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 108/211 (51%), Gaps = 5/211 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F N++ + +I L +A E ++L + + +V + I + +IS + ++
Sbjct: 495 KGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML-ERGLVFDRITYNTLISGCCKEGKVK 553
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNIL 162
++ +EM +Q + +FN LL+ + KID + L+ +K YV P+ +Y ++
Sbjct: 554 EGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV-PNVYTYGVM 612
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + ++E+ + +E++ ++L+ V + +LI C+ ++ A +L++D M+
Sbjct: 613 IDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDD-MKSRG 671
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V ++SL+ GLC +G + A +EM
Sbjct: 672 VLLSCATYSSLMHGLCNIGLVDDAKHLLDEM 702
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 3/194 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ II L ++ DE + ++ + +V P I + I+ + ++ A V
Sbjct: 290 NVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE-KVSPSLITYSVFINGLIKLEKIDEANCV 348
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EMS +NTL++ G I + ++ K +SP++ + N L+ G
Sbjct: 349 LKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCK 408
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S ++ A V +EM+ R L +F +I LCL+ R AL +M+ + N++P+
Sbjct: 409 SDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREML-LRNLRPNDG 467
Query: 229 VFASLIKGLCAVGE 242
+ +L+ GLC G+
Sbjct: 468 LLTTLVSGLCKAGK 481
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + ++S +A A++++ + + + N L++ + G + L
Sbjct: 464 PNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKL 523
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ++E+ + D +YN L+ GC ++++ +++ +EM+K+ +QP + TF L++GLC
Sbjct: 524 LRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCN 583
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++DEA +L + + V P+ + +I G C ++ E+V K+E+++
Sbjct: 584 ADKIDEASRLWHECKKNGYV-PNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNS 641
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 5/220 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + ++ ++L++ L A DE ++ H+ K + VP + +I Y +A +E
Sbjct: 565 KGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNG-YVPNVYTYGVMIDGYCKANKVE 623
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILM 163
+ +E+ S ++ +N+L+ A G ++ L M+ +C +Y+ LM
Sbjct: 624 EGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLM 683
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA-LKLKEDMMRVYN 222
HG ++DA + DEM K L P +V + T+I G ++++ + L+E M +N
Sbjct: 684 HGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE--MSSHN 741
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P+ + +I G C +G+ A EM I DA
Sbjct: 742 IHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDA 781
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 38/248 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y + I L + + DE +L ++ + VP E+++ +I Y + + AL++
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMS-ELGFVPNEVVYNTLIDGYCKMGNISEALKI 383
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVV 168
D+M S + + N+L+ +I + ++ + M P + S++++++ +
Sbjct: 384 RDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCL 443
Query: 169 SRRLEDAWKVFDEMLKRRLQPT-----------------------------------LVT 193
R A EML R L+P +VT
Sbjct: 444 KFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVT 503
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LI+GLC + E LKL DM+ + D + +LI G C G++ KEEM
Sbjct: 504 SNALIHGLCKAGNMQETLKLLRDMLE-RGLVFDRITYNTLISGCCKEGKVKEGFELKEEM 562
Query: 254 VRNKIEMD 261
V+ I+ D
Sbjct: 563 VKKGIQPD 570
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I +A +E + +L++L ++ +++ ++I Y + A ++
Sbjct: 605 NVYTYGVMIDGYCKANKVEEGENLLNELV-SKKLELNSVVYNSLIRAYCINGNMNAAFRL 663
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
D+M S V + ++++L++ + G +D L M K + P+ Y ++ G
Sbjct: 664 RDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSK 723
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ V EM + P T+ +I G C + EA KL +M + PDA
Sbjct: 724 LGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTE-KGILPDAV 782
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + GLC G++ A +EM + +D
Sbjct: 783 TYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLD 815
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L + D+ + +L +++ + ++P + + +I Y + + V EM
Sbjct: 679 YSSLMHGLCNIGLVDDAKHLLDEMRKEG-LLPNVVCYTTIIGGYSKLGQMNKVNIVLQEM 737
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
SS N+ ++ +++ GK L ++ EK + PDA +YN +G ++
Sbjct: 738 SSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKV 797
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
E+A+KV DEM + +T+ TLI G
Sbjct: 798 EEAFKVCDEMSSGAVCLDEITYTTLIDG 825
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + N+I ++ L+ A + ++M V ++ +++ +N ++ KID
Sbjct: 287 VAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN 346
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ + M E P+ YN L+ G + +A K+ D+ML + + P VT +LI G
Sbjct: 347 CVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGF 406
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C ++ +A + E+M+ + + F+ +I LC AL F EM+
Sbjct: 407 CKSDQIGQAENVLEEMIG-RGLPINQGSFSMVINWLCLKFRFVTALHFIREML 458
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Query: 142 TDLFQIMEK---YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D+F ++ K + S C++ L+ V + L+ +++V+D + + P + F T+I
Sbjct: 206 ADVFSLLAKKGLFPSLKTCTF--LLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMI 263
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C R D+A+ L M ++ V P+ + ++I GLC G L A FKE+MV+ K+
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKL-GVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKV 322
Query: 259 E 259
Sbjct: 323 S 323
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y II LGR +V+ +L +++ + P I+ VI+ + R A +
Sbjct: 150 TVVTYGAIIHWLGRKGDLTKVESLLGEMRARG-LSPNVQIYNTVINALCKCRSASQASDM 208
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++M V +FNT++ G + L + + + + P+ SY L+HG V
Sbjct: 209 LNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCV 268
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A + EM+ R P ++T G LI+GL + +V++AL ++E M V PDA
Sbjct: 269 RGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAE-RQVMPDAN 327
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI GLC LS A EEM+ K++ D
Sbjct: 328 IYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPD 360
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP + + +I Y R + L + EM + + TV ++ +++ + G + ++
Sbjct: 113 VPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVES 172
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M + +SP+ YN +++ R A + ++M+K R P +VTF T+I G C
Sbjct: 173 LLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFC 232
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E V EALKL + +R ++P+ + LI G C GE +A EM+
Sbjct: 233 REGDVREALKLLREAIR-RGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMM 283
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 6/207 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ L P N+ Y+ +I L + + + +L+Q+ +R P+ + F +I+ + R
Sbjct: 179 ARGLSP---NVQIYNTVINALCKCRSASQASDMLNQMVK-SRFNPDVVTFNTMIAGFCRE 234
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
+ AL++ E ++ S+ L++ G+ +DL ++M + +PD +
Sbjct: 235 GDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITL 294
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+HG VVS ++ DA V ++M +R++ P + LI GLC + + A L E+M+
Sbjct: 295 GALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLE 354
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
V+PD ++ +LI G +LS A
Sbjct: 355 -QKVQPDKFIYTTLIDGFVRSDKLSDA 380
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
I+ + + +V+P+ I+ +IS + R+L A + +EM VQ + TL++
Sbjct: 312 IVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGF 371
Query: 133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+ K+ +F+ ME+ PD +YN+++ G +++A M K P
Sbjct: 372 VRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEF 431
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
T+ TL+ G + + +L+L DMM+ KP+ +ASLI G C +G+
Sbjct: 432 TYTTLVDGYAKKGDISASLRLLCDMMK-RRCKPNIFTYASLICGYCNIGD 480
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/244 (17%), Positives = 88/244 (36%), Gaps = 53/244 (21%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+++I + M E + ++ +P+E + ++ Y + + +L++
Sbjct: 394 DIVAYNVMIKGYCKFGMMKEAVTCMSSMRK-AGCIPDEFTYTTLVDGYAKKGDISASLRL 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM----- 163
+M + + ++ +L+ G DLF M+ + + P+ Y +L+
Sbjct: 453 LCDMMKRRCKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFK 512
Query: 164 -------------------------------------HGCVVSRRLEDAWK--------V 178
HG V S R + V
Sbjct: 513 KDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDV 572
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
F ++ L P + + +I+ LC + +A+ LK D M PD F SL+ G
Sbjct: 573 FRGLISDGLDPRISAYNAIIFSLCRHNMLGKAMDLK-DKMSNKGCLPDPITFLSLLYGFS 631
Query: 239 AVGE 242
+ GE
Sbjct: 632 SAGE 635
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PDA N L+ V RR E A ++ EML R + ++ GLCLE RV+E L
Sbjct: 44 PDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTCVMVRGLCLEGRVEEGRGL 103
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E V P A + LI G C G++ L EM
Sbjct: 104 IEARWGEGCV-PGAVFYNVLIDGYCRRGDIGRGLLLLGEM 142
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 49/260 (18%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I RAK D+ ++LH++ + +V I + +I + + L A +
Sbjct: 360 DIITFNTLIAGYCRAKRVDDGIKLLHEMT-EAGLVANTITYTTLIHGFCQVGDLNAAQDL 418
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
EM S V V + NTLL+ + GK+ ++F+ M+K
Sbjct: 419 LQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQ 478
Query: 152 -----------------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+ PD +YN ++HG RL++A ++FD M
Sbjct: 479 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSM 538
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ P +VTF TLI G C RVD+ L+L +M R + +A + +LI G VG
Sbjct: 539 GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR-RGIVANAITYITLIHGFRKVGN 597
Query: 243 LSLALGFKEEMVRNKIEMDA 262
++ AL +EM+ + + D
Sbjct: 598 INGALDIFQEMMASGVYPDT 617
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF------YGRARLLEHALQVF 110
++ ++GR +V LH+ K + R VP CN SF + L AL F
Sbjct: 87 VVVRMGRL----DVVISLHR-KMEMRRVP-----CNAYSFTILMKCFCSCSKLPFALSTF 136
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
+++ TV +F+TLL+ + +I DLF M K P+ ++ LM+G
Sbjct: 137 GKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK---PNVVTFTTLMNGLCREG 193
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+ +A + D ML+ LQP +T+GT++ G+C AL L M V ++KP+ ++
Sbjct: 194 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIW 253
Query: 231 -----ASLIKGLCAVGELSLALGFKEEMV-RNKIEMD 261
+I G C+ G S A +EM+ R KI D
Sbjct: 254 PLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPD 290
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 108/207 (52%), Gaps = 2/207 (0%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
+I + + E QQ+L ++ ++ P+ + + +I+ + + A +++DEM
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDA 175
+ + +++++++ ++D +F +M K SPD ++N L+ G ++R++D
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
K+ EM + L +T+ TLI+G C ++ A L ++M+ V P+ +L+
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVS-SGVCPNVVTCNTLLD 439
Query: 236 GLCAVGELSLALGFKEEMVRNKIEMDA 262
GLC G+L AL + M ++K+++DA
Sbjct: 440 GLCDNGKLKDALEMFKAMQKSKMDIDA 466
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 14/219 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQ--QILHQLKHDTRVVPEEIIF------CNVISFYGRAR 101
N + Y I+ G KM D V +L +++ + + P +I+ C + F R
Sbjct: 213 NQITYGTIVD--GMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGR 270
Query: 102 LLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
E A Q+ EM + V ++N L+NA + GK +L+ +++ + + P +Y
Sbjct: 271 WSE-AQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITY 329
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ ++ G RL+ A +F M + P ++TF TLI G C RVD+ +KL +M
Sbjct: 330 SSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTE 389
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + + +LI G C VG+L+ A +EMV + +
Sbjct: 390 A-GLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGV 427
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 98/197 (49%), Gaps = 3/197 (1%)
Query: 23 KLALQLFKNPNPNPNNTEA-QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
K AL++FK + + +A P ++ Y+++I+ L F E +++ ++ H
Sbjct: 448 KDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRG 507
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
+VP+ I + +VI + L+ A Q+FD M S + V +F TL+N G++D
Sbjct: 508 -IVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 566
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+LF ++ + + +A +Y L+HG + A +F EM+ + P +T ++ G
Sbjct: 567 LELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTG 626
Query: 201 LCLELRVDEALKLKEDM 217
L + + A+ + ED+
Sbjct: 627 LWSKEELKRAVAMLEDL 643
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 99/189 (52%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ + L R DE + +LH + + VVP + + +IS + + + A ++
Sbjct: 386 DIYTYNTLACGLCRVNRLDEAKTLLH-IMIEMGVVPNYVTYTTLISIHCKDGDMVEARRL 444
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F EM+ +V ++N +++ G I + MEK PD +Y L+HG V
Sbjct: 445 FREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCV 504
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ A K+F+EM +R +P +V + LI GL E R + A +L +DM++ + PD
Sbjct: 505 NGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKA-GLIPDDS 563
Query: 229 VFASLIKGL 237
++++L+ L
Sbjct: 564 LYSALVGSL 572
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + + + +L ++ V +IIF +I Y R +++ AL++ M
Sbjct: 320 YGVLINGFCKIGQMEAAEMLLADMQGQG-VGLNQIIFNTMIDGYCRKGMVDDALKIKAAM 378
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V+ + ++NTL + ++D L IM E V P+ +Y L+ +
Sbjct: 379 EKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDM 438
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++F EM ++ P++VT+ +I G + + EA + +++M + V PD +AS
Sbjct: 439 VEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFV-PDVYTYAS 497
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
L+ G C G++ +AL EEM + E
Sbjct: 498 LVHGHCVNGKVDVALKLFEEMKQRGTE 524
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RVVPEEIIFCNVISFYGRA 100
P N L Y+ ++ R K VQ+IL ++++ V I + +S A
Sbjct: 204 PRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDSLS---TA 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
R + +F+EM + NV V + ++NA G + R + + + V P+ +Y
Sbjct: 261 RDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+L++G ++E A + +M + + + F T+I G C + VD+ALK+K M +
Sbjct: 321 GVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEK 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
+ V+ D + +L GLC V L A
Sbjct: 381 M-GVELDIYTYNTLACGLCRVNRLDEA 406
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 103/218 (47%), Gaps = 5/218 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLE 104
P + L +++ L ++ D+ +++L + +H + + + +++ Y R +
Sbjct: 172 PGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSL--NALCYNSLLDCYVRQKDDG 229
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
++ + M + ++ TV ++ L++++ T I ++ LF M+ V D Y ++
Sbjct: 230 RVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVI 289
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + + A KV DE + ++P T+G LI G C +++ A L DM + V
Sbjct: 290 NAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADM-QGQGV 348
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +F ++I G C G + AL K M + +E+D
Sbjct: 349 GLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELD 386
>gi|224076667|ref|XP_002304978.1| predicted protein [Populus trichocarpa]
gi|222847942|gb|EEE85489.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 5/212 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRV--VPEEIIFCNVISFYGRARLLEHALQVFD 111
YD+ + R ++ + I L H + E ++I YG+A + + A ++FD
Sbjct: 56 YDIYAITVKRLIKYNRLSMINEILDHQKNFPDMTNETFTAHLIYLYGKAGMFDDARKLFD 115
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVS 169
EM RTV SFN LL A + + D + L E ++ D SY+I ++G
Sbjct: 116 EMPDLKCPRTVFSFNALLLACINARRFDEIKKLLADFRSELGITFDVVSYSIAINGFCKM 175
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A VFDEM+K ++P L+TF TL+ G L + + ++ M+ + NV PD +
Sbjct: 176 GDLVSAEMVFDEMIKSDVEPNLITFNTLLNGFYLNGKFADGERIWSRMVEM-NVVPDVRS 234
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + + L + A+ EEM +E+D
Sbjct: 235 YNAKLHALALENRMKEAIEVVEEMRDKGLELD 266
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 2/195 (1%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A+ FDE++++L + + + + + + I+ + + L A VFDEM +V+ +
Sbjct: 139 ARRFDEIKKLLADFRSELGITFDVVSYSIAINGFCKMGDLVSAEMVFDEMIKSDVEPNLI 198
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNTLLN GK ++ +++E V PD SYN +H + R+++A +V +EM
Sbjct: 199 TFNTLLNGFYLNGKFADGERIWSRMVEMNVVPDVRSYNAKLHALALENRMKEAIEVVEEM 258
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ L+ + +F LI G ++EA + +M R + +P+ F LI LC G+
Sbjct: 259 RDKGLELDVFSFNALIRGFLNGEDLEEAKQWYGEMRR-HGCEPNRVTFQFLIPFLCEKGD 317
Query: 243 LSLALGFKEEMVRNK 257
+ A+ EE+ K
Sbjct: 318 VGFAVEICEEIFDKK 332
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 127/278 (45%), Gaps = 46/278 (16%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
P P + +++R QKDP AL++F + F++ L Y II KLG
Sbjct: 4 PLLPKHVTTVIRCQKDPMKALEMFNSMRKEDG---------FKHTLSTYRSIIEKLGLYG 54
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
F+ ++++L ++ + E ++ + YGR ++ A+ VF+ M ++ + TV S+
Sbjct: 55 KFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSY 114
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSR-----RL------ 172
N +++ ++ G D+ ++ M ++ ++PD S+ I M C SR RL
Sbjct: 115 NAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSS 174
Query: 173 -----------------------EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
++ +++F +ML + L TF L++ LC + V E
Sbjct: 175 QGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKE 234
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
KL + +++ V P+ + I+GLC GEL A+
Sbjct: 235 CEKLLDKVIK-RGVLPNLFTYNFFIQGLCQKGELDAAV 271
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P I++ +I L+ A Q+ EMS + V++FN L+N + G +
Sbjct: 387 IKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L ++M K PD ++NIL+HG ++E+A ++ D M+ + P + T+ +L+ GL
Sbjct: 447 GLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGL 506
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C + ++ ++ + M+ P+ F L++ LC +L ALG EEM + D
Sbjct: 507 CKTSKYEDVMETYKTMVE-KGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPD 565
Query: 262 A 262
A
Sbjct: 566 A 566
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 36/208 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I Y +E+AL++ D M V V ++N+LLN + K + + +
Sbjct: 459 PDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMET 518
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M EK +P+ ++NIL+ +L+ A + +EM + + P VTFGTLI G C
Sbjct: 519 YKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCK 578
Query: 204 ELRVDEALKLKEDMMRVYNVK-----------------------------------PDAQ 228
+D A L M VY V PD
Sbjct: 579 NGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGY 638
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ ++ G C G + L F EM+ N
Sbjct: 639 TYRLMVDGFCKTGNVDLGYKFLLEMMEN 666
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-Q 146
+ +C V+ + + ++F +M + V + +FN LL+ + G + L +
Sbjct: 182 VAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDK 241
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++++ V P+ +YN + G L+ A ++ ++ + +P +VT+ LIYGLC +
Sbjct: 242 VIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSK 301
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
EA ++ + ++PD+ + +LI G C G + LA
Sbjct: 302 FQEA-EVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLA 340
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 88/172 (51%), Gaps = 3/172 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL +++++ L R D+ +L ++K+ + V P+ + F +I + + L+ A +
Sbjct: 530 NLFTFNILLESLCRYHKLDKALGLLEEMKNKS-VNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 110 FDEMSS-FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
F +M + V + ++N +++A + LFQ M ++ + PD +Y +++ G
Sbjct: 589 FRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFC 648
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+ ++ +K EM++ P+L T G +I LC+E RV EA + M++
Sbjct: 649 KTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+ Y+ I++ L + FD+ ++ +++ D + P+ F + + R AL++
Sbjct: 111 VFSYNAIMSILVDSGYFDQAHKVYMRMR-DRGITPDVYSFTIRMKSFCRTSRPHAALRLL 169
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
+ MSS + V ++ T++ D +LF +++ VS ++N L+H
Sbjct: 170 NNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKK 229
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+++ K+ D+++KR + P L T+ I GLC + +D A+++ ++ KPD
Sbjct: 230 GDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLID-QGPKPDVVT 288
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LI GLC + A + ++V +E D+
Sbjct: 289 YNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDS 321
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 92/207 (44%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ I L + D +++ +L D P+ + + +I + + A
Sbjct: 250 NLFTYNFFIQGLCQKGELDAAVRMVGRLI-DQGPKPDVVTYNYLIYGLCKNSKFQEAEVY 308
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCV 167
++ + ++ ++NTL+ G + + + +V PD +Y L+ G
Sbjct: 309 LGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFV-PDEFTYRSLIDGLC 367
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
A +F+E L + ++P ++ + TLI GL + + EA +L +M + P+
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSE-KGLIPEV 426
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
Q F L+ GLC +G +S A G + M+
Sbjct: 427 QTFNILVNGLCKMGCVSDADGLVKVMI 453
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 99/214 (46%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L + F E + L +L ++ + P+ + +I+ Y + +++ A ++
Sbjct: 285 DVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEG-LEPDSFTYNTLIAGYCKGGMVQLAERI 343
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++ +L++ + G+ +R LF + + K + P+ YN L+ G
Sbjct: 344 LVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSN 403
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A ++ EM ++ L P + TF L+ GLC V +A L + M+ PD
Sbjct: 404 QGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS-KGYFPDIF 462
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
F LI G ++ AL + M+ N ++ D
Sbjct: 463 TFNILIHGYSTQLKMENALEILDVMMDNGVDPDV 496
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 121/250 (48%), Gaps = 16/250 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L R + D + AL + K A+ K +++ YD+ + LG+AK +D +++ +
Sbjct: 158 LHRFRDDWRSALGILK---------WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFV 208
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++ D V + ++ + A E A+ +FD + F +++ +S N LL+ +
Sbjct: 209 ERMRGDKLVTLNTV--AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 266
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++++ + ++ +++P+A ++NI +HG + R+E+A EM +P ++++
Sbjct: 267 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 326
Query: 195 GTLIYGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+I C + E +K+ E M P++ + +++ L A E AL
Sbjct: 327 TTIIRCYCQQF---EFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 383
Query: 253 MVRNKIEMDA 262
M R+ + D+
Sbjct: 384 MKRSGCKPDS 393
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 3/200 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+L++ L + K ++ + +L QLK + + P F I + +A +E AL EM
Sbjct: 258 NLLLDTLCKEKRVEQARVVLLQLK--SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMK 315
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLE 173
+ V S+ T++ + ++ ++ ME SP ++ +Y +M + E
Sbjct: 316 GHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFE 375
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A +V M + +P + + LI+ L R++EA ++ M V + + S+
Sbjct: 376 EALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSM 435
Query: 234 IKGLCAVGELSLALGFKEEM 253
I C E A+ +EM
Sbjct: 436 IAMYCHHDEEDKAIELLKEM 455
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 4/215 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR ++ Y II + F +V ++L +++ + P I + ++S + E A
Sbjct: 319 FRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSP-PNSITYTTIMSSLNAQKEFEEA 377
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMH 164
L+V M + +N L++ + G+++ +F++ E VS + +YN ++
Sbjct: 378 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 437
Query: 165 GCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ A ++ EM L P + T+ L+ V E KL ++M+ +++
Sbjct: 438 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 497
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + LI+ LC A EEM+ I
Sbjct: 498 SLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 532
>gi|242086476|ref|XP_002443663.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
gi|241944356|gb|EES17501.1| hypothetical protein SORBIDRAFT_08g023090 [Sorghum bicolor]
Length = 853
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 121/248 (48%), Gaps = 12/248 (4%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
F+ +L+L D +AL F+ P F+++ Y +I LG+A+ F
Sbjct: 328 FQANQVLKLLHDHTVALGFFQWLKRQPG---------FKHDGHTYTTMIGILGQARQFGV 378
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++++L ++ P + + +I YGRA L+ A++VF+EM + ++ TL+
Sbjct: 379 LKKLLDEMSR-AHCKPTVVTYNRIIHAYGRANYLKEAVKVFEEMQEAGYEPDRVTYCTLI 437
Query: 130 NAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G +D DL+ M++ +SPD +Y+ +++ +L A+K+F EM++
Sbjct: 438 DIHAKAGYLDIAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCT 497
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P LVT+ +I + +KL +D M+V +PD ++ +++ L G L A
Sbjct: 498 PNLVTYNIMIALQAKARNYENVVKLYKD-MQVAGFRPDKITYSIVMEVLGHCGHLDEAEA 556
Query: 249 FKEEMVRN 256
EM R+
Sbjct: 557 VFIEMRRD 564
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 88/209 (42%), Gaps = 13/209 (6%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LG+ ++ ++ + P + + +I+ +AR E+ ++++ +M
Sbjct: 468 YSAMVNCLGKGGQLAAAYKLFCEMI-ENGCTPNLVTYNIMIALQAKARNYENVVKLYKDM 526
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ +++ ++ + CG +D +F M + +PD Y +L+ + ++
Sbjct: 527 QVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVD 586
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + ML+ LQP + T +L+ R +A + ++M+ + P Q + L
Sbjct: 587 KALGWYQAMLQDGLQPNVPTCNSLLSAFLKMNRFQDAYIVLQNML-AQGLVPSVQTYTLL 645
Query: 234 IK---------GLCAVGELSLALGFKEEM 253
+ GLC G+L G M
Sbjct: 646 LSCCTEAQAQMGLC--GQLMAITGHPAHM 672
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-----------DRMTDLFQIMEKYVSP 154
A +F EM N+ V +FN L++A+ GKI D +LF E + P
Sbjct: 371 AFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLF--TEMHCKP 428
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
+ SYN L+ G S RL AWK+ D+M R P ++T+ +L++ LC VD+A+ L
Sbjct: 429 NTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALV 488
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRN 256
+ + ++PD + +L+ GLC G L A L F++ +++
Sbjct: 489 NN-FKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKG 530
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
KM DE + ++ P + + +I + ++ L HA ++ D+M V +
Sbjct: 412 KMVDEALNLFTEM----HCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVIT 467
Query: 125 FNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N+LL+A+ +D+ L ++ + PD +YN L+ G RL+DA +F ++L
Sbjct: 468 YNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLL 527
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ T+ +I GLCLE +DEA L M PD + ++I L
Sbjct: 528 IKGYNLPTWTYNIMINGLCLEGLLDEAETLLSK-MEDNGCIPDVVTYQTIIHAL 580
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNI 161
+ AL D + + ++ L+N + G+ + L QI K V+ + Y+
Sbjct: 277 VNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 336
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV---------------------TFGTLIYG 200
++ G + + DA+ ++ EM+ +R+ PT+V TF L+
Sbjct: 337 VIDGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDA 396
Query: 201 LCLELRVDEA----LKLKEDMMRVY---NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC + ++ EA +K+ ++ + ++ + KP+ + +LI G C G LS A ++M
Sbjct: 397 LCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQM 456
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDLFQIME-KYVSPDACSY 159
++++A+ F+ M ++ FN +L ++ T + L ME K V PD +
Sbjct: 185 VVDNAVLSFNRMLQMRHTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTL 244
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+IL++ C K +P +T TLI GLCL +V+EAL L D +
Sbjct: 245 SILIN-CY--------------YFKMGYEPNTITLTTLIKGLCLNGKVNEAL-LFHDHVL 288
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL 247
+ + LI GLC +G+ AL
Sbjct: 289 ALGFHLNHVTYGILINGLCKMGQTRAAL 316
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK- 212
P+ + L+ G ++ ++ +A D +L VT+G LI GLC + AL+
Sbjct: 259 PNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQV 318
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
L++ ++ N + +++++I GLC + A G EM+ +I
Sbjct: 319 LRQIEGKLVNT--NVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRI 362
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ N + Y ++ L ++ H+ K P+ I++ +IS +A LE A
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ M + K++N L+ ++ +L Q M E + PD C+YN L+ G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ +M+ QP+++TFGTL++G C ++DEAL++ M + P+
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDE-SGIHPN 492
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ +LI LC G++ LA+ +EM
Sbjct: 493 NVIYNTLIDFLCKRGDVDLAIELFDEM 519
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVF 179
V +FN++L A+ + M ++ +M+ S PD +Y IL++G + R+ DA +V
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195
Query: 180 DEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKED-MMRVYNVKPDAQVFASLIKG 236
D M ++ L +P +VT T++ GLC RV EAL E M V+ P+ + LI
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDA 255
Query: 237 LCAVGELSLALGFKEEM 253
C VG +S+A E+M
Sbjct: 256 FCRVGNISMAYELVEKM 272
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + Y+++I R K E ++L ++K + + P+ + ++S +A
Sbjct: 384 FKLDTKAYNILIAGFCRKKRLHEAYELLQEMK-EVGIRPDVCTYNTLLSGSCKAGDFAAV 442
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
++ +M Q +V +F TL++ GKID + + M E + P+ YN L+
Sbjct: 443 DELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDF 502
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
++ A ++FDEM ++ + + TF L+ GL + ++A +L D MR P
Sbjct: 503 LCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGLRDKNMPEKAFELM-DQMREERCFP 561
Query: 226 D 226
D
Sbjct: 562 D 562
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R ++ Y+ +++ +A F V ++L ++ D P I F ++ Y + ++ A
Sbjct: 419 IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDG-CQPSVITFGTLVHGYCKVGKIDEA 477
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
L++ M + +NTL++ + G +D +LF M EK V + ++N L+ G
Sbjct: 478 LRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E A+++ D+M + R P VT L+
Sbjct: 538 LRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 101/214 (47%), Gaps = 13/214 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++ I+ L R + + +I ++ V P+ + + +++ +A + AL+V
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194
Query: 110 FDEMS--SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNI 161
D MS +++ V + NT+++ + G R+ + +E+ +S P+ +YN
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSG---RVQEALAFVEQRMSSVHGCPPNTVTYNC 251
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ + A+++ ++M + +VT T++ GLC R AL+ + V+
Sbjct: 252 LIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVW 311
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLALG-FKEEM 253
K +A +++L+ L + +A+ F E+M
Sbjct: 312 PEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKM 345
>gi|302797282|ref|XP_002980402.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
gi|300152018|gb|EFJ18662.1| hypothetical protein SELMODRAFT_32257 [Selaginella moellendorffii]
Length = 457
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 5/215 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y ++ L R K + +L +++ VVPE + +I GR ++ A +
Sbjct: 66 NLATYLCVMMGLCRGKRSIDAIGVLREMQK-RNVVPELATYLMLIEGLGRDHRVKEAFDL 124
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVS--PDACSYNILMHGC 166
F E+ + S++ ++ + G D LF+ ME P+ +YN+L+ G
Sbjct: 125 FQEIHARGFTAKASSYSYIVCGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAYNVLLTGL 184
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+E+ ++F EM ++ +P LVT+ T I GLC RVD+A+ +K++M++ + PD
Sbjct: 185 KKKDGVEEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQ-KSCSPD 243
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V++ LI C VG++ EM+ K++ D
Sbjct: 244 NVVYSILINAFCKVGKIYEGEKLLAEMLEKKLQPD 278
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 100/212 (47%), Gaps = 3/212 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQ-QILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+ F Y I+ L + FDE Q+ +++ + P + +++ + +
Sbjct: 131 RGFTAKASSYSYIVCGLAKYGYFDEAAIQLFRKMEGEYGCPPNTYAYNVLLTGLKKKDGV 190
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNIL 162
E ++F EM + + ++ T + + G++D M ++++K SPD Y+IL
Sbjct: 191 EEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSIL 250
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ ++ + K+ EML+++LQP +V F +L+ L R +A +L MM
Sbjct: 251 INAFCKVGKIYEGEKLLAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMME-QG 309
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KPDA + + ++ GE++ AL +E V
Sbjct: 310 CKPDAVIASVMLDSFTKRGEVAQALELVDEFV 341
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + E +++L ++ + ++ P+ + F +++ +A A ++F M
Sbjct: 247 YSILINAFCKVGKIYEGEKLLAEM-LEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRM 305
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-----PDACSYNILMHGCVV 168
+ + +L++ G++ ++++++V P A S N L+ VV
Sbjct: 306 MEQGCKPDAVIASVMLDSFTKRGEV---AQALELVDEFVDRDLPLPSAGSINQLVKRIVV 362
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK--EDMMRVYNVKPD 226
++ED ++ M R +P ++ TL+ LC EAL+L ++M+ + PD
Sbjct: 363 GDKVEDGVRLLKTMASRGSRPLQCSYATLLRELCRRKNAVEALELDLFQEMIESGRI-PD 421
Query: 227 AQVFASLIKGLCAVGEL 243
+ L++ LC G++
Sbjct: 422 VNSYEILVEALCKAGKI 438
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N LL A++ G+ +F K ++P DA SY IL + V + L+ A K+ + L
Sbjct: 2 NALLVALIKNGRHREAHGIFDSQLKSLAPPDASSYGILANAYVQAGDLDAAVKLLRD-LP 60
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
L T+ ++ GLC R +A+ + +M + NV P+ + LI+GL
Sbjct: 61 ASTTANLATYLCVMMGLCRGKRSIDAIGVLREMQK-RNVVPELATYLMLIEGL 112
>gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 549
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ +A+ D+ ++I+ ++ P + + I Y + + + +F EM
Sbjct: 272 FNILLHGYCKARKLDDARKIMDEMDKQG-FQPNVVSYTCFIELYCKLKDFRNVEAIFSEM 330
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
+ + V ++ ++A+ ++++ +++++M+ PDA Y+ L+ S RL
Sbjct: 331 QEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRL 390
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+DAW VF++M K+ + P L+T+ T+I C L + ALKL M + KPD Q +A
Sbjct: 391 KDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLR-RMEEDSCKPDIQTYAP 449
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+K C + + M +N I +D
Sbjct: 450 LLKMCCRKKRIKVLKFLLNHMFKNNISID 478
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 37/243 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
YDL++ LGR K F + +++ ++++ V + V+ RA + A++ F +
Sbjct: 168 YDLMVDILGRRKKFSFMWELVKEMENLEGYV-SLVTMKKVMRRLARAGNFQDAVEAFRGI 226
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
V++ +++ N L++A++ G ++ F + + D S+NIL+HG +R+L+
Sbjct: 227 EKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLD 286
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLI----------------------------------- 198
DA K+ DEM K+ QP +V++ I
Sbjct: 287 DARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFM 346
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ L +V++AL++ E MM+ PDA ++SLI L G L A E+M + +
Sbjct: 347 HALGKAKQVNKALEVYE-MMKSNCCVPDASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGV 405
Query: 259 EMD 261
D
Sbjct: 406 SPD 408
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 109/204 (53%), Gaps = 4/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F ++ ++++ L + + +L ++K+ +P + + ++++Y + +
Sbjct: 224 RKFPLDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCR--LPNAVTYNTILNWYVKKGRCK 281
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
AL++ D+M ++ + ++N +++ + + R L + M E ++PD CSYN L+
Sbjct: 282 SALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLI 341
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG ++ A +F++ML++ L+P++ T+ LI G C R DEA ++ + M++ V
Sbjct: 342 HGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYE-MQITGV 400
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
+P +++L+ G C +L AL
Sbjct: 401 RPSELTYSALLNGYCKHSKLGPAL 424
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 3/177 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNA 131
IL Q+ + +VP+ I + +++ ++ A +F E+ + ++N+++N
Sbjct: 705 ILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNG 764
Query: 132 MLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
L G+I+ + L + M E V P + SYNILMHG + +L ++ +M+K ++P
Sbjct: 765 YLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPD 824
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
VT+ LI+GLC ++ A+K E M+ + V PD F LIK ++S AL
Sbjct: 825 NVTYRLLIFGLCEYGLIEIAVKFLEKMV-LEGVFPDNLAFDILIKAFSEKSKMSNAL 880
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
V + N +LN++ T GK+ + + Q M+ P+A +YN +++ V R + A ++ D+
Sbjct: 230 VTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYVKKGRCKSALRILDD 289
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M K ++ L T+ +I LC R A L + M V N+ PD + +LI G G
Sbjct: 290 MEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREV-NLTPDECSYNTLIHGFFGEG 348
Query: 242 ELSLALGFKEEMVRNKIE 259
+++LA+ +M+R ++
Sbjct: 349 KINLAIYIFNQMLRQSLK 366
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 21/172 (12%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + F +I + + +ALQ+F M G ID
Sbjct: 856 VFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWV-------------------GDIDGAF 896
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L + M+ V P + + ++ G ++E+A VF +++ + PT+ TF TL++GL
Sbjct: 897 ELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGL 956
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C E ++D+A LK+ +M +K D + LI GLC + AL EEM
Sbjct: 957 CKEFKIDDAFHLKQ-LMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEM 1007
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 99/234 (42%), Gaps = 38/234 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + + M E ++IL +++ + V+P +++ ++ ++ +A + AL+
Sbjct: 473 DVITYSALINGMCKMGMIHETKEILSRMQK-SGVLPNNVLYTTLVFYFCKAGHAKEALKY 531
Query: 110 FDE-----------------------------------MSSFNVQRTVKSFNTLLNAMLT 134
F + MS + V SFN ++++
Sbjct: 532 FVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQ 591
Query: 135 CGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G + ++ M ++ PD C+Y L+ G L A + +L++ T
Sbjct: 592 RGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKT 651
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
TL+ G+C +DEAL L E M+ N+ PD + L+ G C G++ AL
Sbjct: 652 LNTLLVGICKHGTLDEALDLCEKMV-TRNILPDTYTYTILLDGFCKRGKVVPAL 704
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 6/221 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q LKP ++ Y +I R DE +++L++++ T V P E+ + +++ Y +
Sbjct: 363 QSLKP---SVATYTALIDGYCRNGRTDEARRVLYEMQ-ITGVRPSELTYSALLNGYCKHS 418
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
L AL + + S ++ + L++ G++ + + + M + PD +Y+
Sbjct: 419 KLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYS 478
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L++G + + ++ M K + P V + TL++ C EALK D+ R
Sbjct: 479 ALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRS 538
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ + +L+ G ++ A FK+ M R KI D
Sbjct: 539 -GLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFD 578
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
++ LLN ++ G++ + +FQ I ++ + D +YN +M+G + ++ + ++
Sbjct: 721 AYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRN 780
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M + + P+ ++ L++G + ++ L L DM++ +KPD + LI GLC G
Sbjct: 781 MHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVK-EGIKPDNVTYRLLIFGLCEYG 839
Query: 242 ELSLALGFKEEMV 254
+ +A+ F E+MV
Sbjct: 840 LIEIAVKFLEKMV 852
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 76 QLKHDTR---VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+LK D + VVP E+ +++ + +E A+ VF + + T+ +F TL++ +
Sbjct: 897 ELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGL 956
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
KID L Q+ME + D +YN+L+ G + + DA +++EM + L P +
Sbjct: 957 CKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNI 1016
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDM 217
T+ TL + + + KL +D+
Sbjct: 1017 TTYITLTGAMYATGTMQDGEKLLKDI 1042
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L+ AL + ++M + N+ ++ LL+ GK+ L Q+M EK + PD +Y
Sbjct: 665 LDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTC 724
Query: 162 LMHGCVVSRRLEDAWKVFDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L++G V +++ A +F E++ K L + + +++ G +++E +L +M
Sbjct: 725 LLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHE- 783
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V P + + L+ G G+LS L +MV+ I+ D
Sbjct: 784 NEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPD 824
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
K+ NTLL + G +D DL + M + + PD +Y IL+ G ++ A +
Sbjct: 650 KTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQM 709
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
ML++ L P + + L+ GL E +V A + ++++ + D + S++ G G
Sbjct: 710 MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGG 769
Query: 242 ELS 244
+++
Sbjct: 770 QIN 772
>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
Length = 484
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ +I L + D + +L HD V P+ + ++ +A LE A++V
Sbjct: 147 NVATYNTVINGLCKFGKIDWAVHLFTRLPHDL-VDPDGFTYSTLVHGLCQAERLEAAIKV 205
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CV 167
+D M N ++N + + ++D ++ + M ++ P +YN +++G C
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQ 265
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R+E+A+++F +M+ P VT+GT+I GL V L+L + M + + PD
Sbjct: 266 YKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKA-GLSPDG 324
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SLI V +L A ++ RN + D
Sbjct: 325 YAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
EV + + Q VV I V + R +E A ++F +M + ++ T+
Sbjct: 239 EVLKTMIQRGCKPSVVTYNCIINGVCQYKNR---IEEAYRLFQQMVGSDCPPNAVTYGTM 295
Query: 129 LNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + ++ R +LF+ M K +SPD +Y+ L++ V R+L++A + + + +
Sbjct: 296 ILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHV 355
Query: 188 QPTLVTFGTLIYGLCL--ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P + + TLI G C + RVDEAL L ++M + V P+ + +++GLC G
Sbjct: 356 GPDVYMYTTLISGYCRARKPRVDEALLLFQNM-KDRRVWPNVITYNIVLRGLCKTGRFDE 414
Query: 246 ALGFKEEMVRNK 257
A +EM + K
Sbjct: 415 AYQIFQEMFKVK 426
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 40/217 (18%)
Query: 84 VPEEIIFCNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+P ++ NV+ Y + AL F +M + V ++NT++N + GKID
Sbjct: 110 IPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAV 168
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML------------------ 183
LF ++ V PD +Y+ L+HG + RLE A KV+D ML
Sbjct: 169 HLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGF 228
Query: 184 -----------------KRRLQPTLVTFGTLIYGLC-LELRVDEALKLKEDMMRVYNVKP 225
+R +P++VT+ +I G+C + R++EA +L + M+ + P
Sbjct: 229 CKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGS-DCPP 287
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+A + ++I GL + E+ L + M + + D
Sbjct: 288 NAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDG 324
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 4/210 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
+R+++ Y ++ L RA+ E + +L R P F +I + R
Sbjct: 40 YRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCR--PSLYSFTIIIQCFCNVRNPGR 97
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A + M S + V ++N +L G++ R F M K P+ +YN +++G
Sbjct: 98 AWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVING 157
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+++ A +F + + P T+ TL++GLC R++ A+K+ DMM N
Sbjct: 158 LCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV-YDMMLEANYDG 216
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
DA + ++ G C + AL + M++
Sbjct: 217 DAGAYNAMADGFCKERRVDEALEVLKTMIQ 246
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II + + K E L Q + P + + +I + ++ L++
Sbjct: 252 SVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLEL 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F MS + ++++L+ A + K+D + Q +V PD Y L+ G
Sbjct: 312 FKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCR 371
Query: 169 SR--RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R R+++A +F M RR+ P ++T+ ++ GLC R DEA ++ ++M +V P+
Sbjct: 372 ARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKV-KCSPN 430
Query: 227 AQVFASLIKGLCAVGE 242
F + G+ G+
Sbjct: 431 RMTFKVMTMGMIHCGK 446
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
N + Y +I LG +K++ EVQ+ L K ++ + P+ + ++I + + R L+ A
Sbjct: 288 NAVTYGTMI--LGLSKIY-EVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAK 344
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGK--IDRMTDLFQIM-EKYVSPDACSYNILMH 164
+ + + +V V + TL++ K +D LFQ M ++ V P+ +YNI++
Sbjct: 345 SILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLR 404
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
G + R ++A+++F EM K + P +TF + G+ + D+ ++ DM+
Sbjct: 405 GLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMV 458
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
RAR A++ F + + ++ SF ++ R M + PD
Sbjct: 56 RARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVT 115
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL----KL 213
+YN+++ G R+ A F +M K +P + T+ T+I GLC ++D A+ +L
Sbjct: 116 AYNVVLKGYCDLGRVGRALIKFGKMGKT-CKPNVATYNTVINGLCKFGKIDWAVHLFTRL 174
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D+ V PD +++L+ GLC L A+ + M+ + DA
Sbjct: 175 PHDL-----VDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDA 218
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 108/213 (50%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L + + ++L++++ R+ + + + +++ + A ++
Sbjct: 169 NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARI 228
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M+ + V +F L++A + G +D +L+ Q+++ + P+ +YN L++G +
Sbjct: 229 LRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCM 288
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL A K FD M + P +VT+ TLI G C RV++ +KL + M R + D
Sbjct: 289 HGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR-EGLVGDTF 347
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C VG+L +A MV + D
Sbjct: 348 TYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPD 380
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++T L + + + +IL + R+ P+ F +I + + L+ A ++
Sbjct: 205 DLVTYNTLLTGLCYSGEWRQAARILRDMT-KRRINPDVFTFTALIDAFVKQGNLDEAQEL 263
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+ +M ++ ++N+L+N + G++ F +M K P+ +YN L++G
Sbjct: 264 YKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCK 323
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
SRR+ED K+F M + L T+ TLI+G C ++ A + M+ V PD
Sbjct: 324 SRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSC-GVTPDII 382
Query: 229 VFASLIKGLCAVGELSLAL 247
L+ GLC GE+ A+
Sbjct: 383 THCILLHGLCVNGEIGSAM 401
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 101/198 (51%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L + + + +I + ++ +V + + + +IS + A ++
Sbjct: 719 NVVIYNTVINGLCKNRDLNNALEIFYGMEKKG-IVADAVTYNTLISGLCNSGRWTDAARL 777
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M + V F L++ + G + +L+ +++ + V P+ +YN L++G +
Sbjct: 778 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
RL DA +FD M+ + P +VT+ TLI G C RV++ +KL +M + DA
Sbjct: 838 QGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTH-QGLVGDAF 896
Query: 229 VFASLIKGLCAVGELSLA 246
+ +LI G C G+L++A
Sbjct: 897 TYNTLIHGYCQAGKLNVA 914
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I+ + ++R +E +++F M + ++NTL++ GK+ D+
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M V+PD ++ IL+HG V+ + A F++M +V + +I+GLC
Sbjct: 369 FSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCK 428
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+V+EA +L + V VKPDA+ + +I GLC G
Sbjct: 429 ADKVEEAWEL-FCRLPVEGVKPDARTYTIMILGLCKNG 465
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 84/179 (46%), Gaps = 1/179 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMT 142
+P + F +++ R E + +M F + + SF L++ C ++ ++
Sbjct: 62 LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALS 121
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L ++M+ P ++ L+HG + R+ DA+ + M+K +P +V + TLI LC
Sbjct: 122 ILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLC 181
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+ AL+L +M + + D + +L+ GLC GE A +M + +I D
Sbjct: 182 KNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPD 240
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ + ++T + + FD V + H+++ + + + F +I + R AL +
Sbjct: 614 SIVDFTRVLTAIAKMNKFDIVIYLFHKME-NLGISHDLYSFTILIHCFCRCSRFSLALAL 672
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+M Q ++ + +LLN + L M E + P+ YN +++G
Sbjct: 673 LGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCK 732
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+R L +A ++F M K+ + VT+ TLI GLC R +A +L DM++ + P+
Sbjct: 733 NRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVK-RKIDPNVI 791
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
F +LI G L A +EM+R +
Sbjct: 792 FFTALIDTFVKEGNLLEAKNLYKEMIRRSVH 822
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F V++ + + + +F +M + + + SF L++ C +
Sbjct: 609 SRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSL 668
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + L++G R ++A + D M + L+P +V + T+I
Sbjct: 669 ALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVIN 728
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLC ++ AL++ M + + DA + +LI GLC G + A +MV+ KI+
Sbjct: 729 GLCKNRDLNNALEIFYGMEK-KGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKID 787
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P + + ++I+ + L A +FD M S V ++NTL+ +++
Sbjct: 821 VHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGM 880
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF ++ + + DA +YN L+HG + +L A KVF+ M+ + P +VT+ L+ L
Sbjct: 881 KLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCL 940
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++++AL + ED+ + + D + +I+G+C ++ A + R +++D
Sbjct: 941 CNNGKIEKALVMVEDLQK-NQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLD 999
Query: 262 A 262
A
Sbjct: 1000 A 1000
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +IT ++K ++ ++ ++ H +V + + +I Y +A L A +V
Sbjct: 859 DVVTYNTLITGFCKSKRVEDGMKLFCEMTHQG-LVGDAFTYNTLIHGYCQAGKLNVAQKV 917
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+ M V + ++N LL+ + GKI++ + + ++K + D +YNI++ G
Sbjct: 918 FNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCR 977
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL----KED 216
+ ++++AW +F + ++ ++ + + T+I GLC EA KL KED
Sbjct: 978 NDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED 1029
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L G + S R EDA +F EM++ + P++V F L+ + LR E + M ++
Sbjct: 36 LRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIA-NLRRYETVIYFSQQMELF 94
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ D F LI C LSLAL +M++
Sbjct: 95 GISHDLYSFTILIHCFCRCSRLSLALSILGKMMK 128
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E KP N Y ++I + M D +L+++K + + P+ + +I +
Sbjct: 205 EQGSTKP---NTCIYSIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDALCK 260
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
E+ +F EM N+ V +FN++++ + GK++ ++ + M EK V PD +
Sbjct: 261 LSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVIT 320
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+++ G + +++ A ++FD M+ + ++P ++++ LI G + ++DEA+++ ++
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREIS 380
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +KP L+ GL +G A F +EM+
Sbjct: 381 Q-KGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++ +I L + ++ ++I+ + + V P+ I + +I YG ++ A ++
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMI-EKGVDPDVITYNMIIDGYGLRGQVDRAREI 340
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
FD M + +++ + S+N L+N KID M +I +K + P + N+L+HG
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + A FDEML P L T TL+ G V+EA+ + R + Q
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQ 459
Query: 229 VFASLIKGLCAVGELSLA 246
++ ++I GLC G+L A
Sbjct: 460 IYTAVIDGLCKNGKLDKA 477
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 6/136 (4%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ T++N + G + DL ++ME+ P+ C Y+I++ L+ A + +EM
Sbjct: 181 YGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMK 240
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++ + P + T+ TLI LC + + L +M+ + N+ P+ F S+I GLC G++
Sbjct: 241 QKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHL-NIYPNVCTFNSVIDGLCKEGKV 299
Query: 244 SLALGFKEEMVRNKIE 259
A EE++R IE
Sbjct: 300 EDA----EEIMRYMIE 311
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-- 102
K N++ Y+++I R K DE Q+ ++ + + I+ CNV+ +G L
Sbjct: 347 KSIEPNIISYNILINGYARQKKIDEAMQVCREISQ--KGLKPSIVTCNVL-LHGLFELGR 403
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS-YNI 161
+ A FDEM S + + TLL G ++ F +E+ Y
Sbjct: 404 TKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +L+ A F+++ L P ++T+ +I G C E +DEA +DM+R
Sbjct: 464 VIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA----KDMLRKM 519
Query: 222 ---NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + + +++G ++S F EE+ +A
Sbjct: 520 EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEA 563
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-D 155
+ + L+ A +F +M +V SF+ LL A++ + LF+ + K P
Sbjct: 47 FENVKCLDDAFSLFRQMVRTKPLPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVH 106
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+I+++ C + R + + V K+ + V F TL+ GL E +V +A+ L +
Sbjct: 107 EFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFK 166
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++R +P+ ++ +++ GLC G A
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAF 198
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 110/210 (52%), Gaps = 3/210 (1%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
+Y+++I K + + + I ++++ + P + F +I+ ++R L+ ++
Sbjct: 225 YYNILINKFCKEGSIRDAKLIFNEIRKRG-LRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
M + V +++ L++ + G++D LF ++ ++ + P+ ++ L+ G SRR
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRR 343
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A + +ML ++P LV + TL+ GLC V++A KL D M++ +KPD +
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL-VDEMKMVGMKPDKITYT 402
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI G C G+L A+ ++ M + +D
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 22/226 (9%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQL-----KHDTRVVPEEI-----------IF 90
FR+ Y + L +MF E Q I+ L K V I +F
Sbjct: 97 FRHTSQSYCAMANFLSAHQMFQECQSIIRFLVSRKGKDSAASVFAAILDTAGTRCSNFVF 156
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIME 149
++ Y + + A+Q F + + N Q LL+ M+ + T +I+E
Sbjct: 157 DALMIAYWDSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
P YNIL++ + DA +F+E+ KR L+PT V+F TLI GLC +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276
Query: 210 ALKLKEDM--MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+LK+ M R+Y PD ++ LI GLC G L +A +EM
Sbjct: 277 GFRLKKTMEENRIY---PDVFTYSVLIHGLCKEGRLDVAEQLFDEM 319
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I L + D +Q+ +++ + P I F +I R+R ++ A+
Sbjct: 292 DVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-LRPNGITFTALIDGQYRSRRMDSAMNT 350
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
+ +M + V+ + +NTLLN + G +++ L M+ + PD +Y L+ G
Sbjct: 351 YHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCK 410
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
LE A ++ M + + V F LI G C + RV +A + +M+ +KPD
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA-GMKPDDA 469
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +I G C G + + +EM N
Sbjct: 470 TYTMVIDGYCKKGNVKMGFKLLKEMQIN 497
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 44/204 (21%)
Query: 94 ISFYGRARLLEHALQ---------VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
I F+G LL+ + + E+ + V+ +N L+N G I +
Sbjct: 186 IPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLI 245
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +I ++ + P S+N L++G SR L++ +++ M + R+ P + T+ LI+GLC
Sbjct: 246 FNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCK 305
Query: 204 ELRVDEALKLKEDM----------------------------MRVYN------VKPDAQV 229
E R+D A +L ++M M Y+ VKPD +
Sbjct: 306 EGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVM 365
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+ +L+ GLC VG+++ A +EM
Sbjct: 366 YNTLLNGLCKVGDVNKARKLVDEM 389
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 101/204 (49%), Gaps = 3/204 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ ++ L + ++ ++++ ++K + P++I + +I Y + LE A+++
Sbjct: 362 DLVMYNTLLNGLCKVGDVNKARKLVDEMKM-VGMKPDKITYTTLIDGYCKEGDLESAMEI 420
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
M+ V +F L++ G++ D L +++E + PD +Y +++ G
Sbjct: 421 RKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCK 480
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ +K+ EM +P ++T+ L+ GLC + ++ A L E M+ + V PD
Sbjct: 481 KGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNL-GVTPDDI 539
Query: 229 VFASLIKGLCAVGELSLALGFKEE 252
+ L++G C G+ L + E
Sbjct: 540 TYNILLEGHCKNGKAEDLLKLRNE 563
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 103/199 (51%), Gaps = 15/199 (7%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
MFD++ + ++ P +I+ +I +++ +++AL + + M + V ++
Sbjct: 173 MFDQMVGMGYK--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTY 224
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N+L++ + + G+ T + M K + PD ++N L+ CV R+ +A + ++EM++
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR 284
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R L P +VT+ LIYGLC+ R+DEA ++ M+ PD ++ LI G C ++
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVE 343
Query: 245 LALGFKEEM-----VRNKI 258
+ EM VRN +
Sbjct: 344 HGMKLFCEMSQRGVVRNTV 362
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
++ N++ Y+ II L ++K D +L++++ D + P+ + + ++IS + A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG-IGPDVVTYNSLISGLCSSGRWSDA 240
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG 165
++ M+ + V +FN L++A + G++ + ++ ++ + + PD +Y++L++G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ RL++A ++F M+ + P +VT+ LI G C +V+ +KL +M + V
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ-RGVVR 359
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + LI+G C G+L++A EE+ R +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVA----EEIFRRMV 388
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSS 115
+++ + + K +D V + Q++ +P + CN++ + + R L AL +M
Sbjct: 87 LLSAISKMKKYDVVIYLWEQMQ--MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIK 144
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRR 171
+ ++ +F +LLN + DR+ D + ++ V P+ YN ++ G S++
Sbjct: 145 LGHEPSIVTFGSLLNGFC---RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A + + M K + P +VT+ +LI GLC R +A ++ M + + PD F
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYPDVFTFN 260
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI G +S A F EEM+R ++ D
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRRSLDPD 290
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +++ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EMS V R ++ L+ GK++ ++F+ M V P+ +YN+L+HG
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCD 408
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++E A + +M K + +VT+ +I G+C V +A + + + PD
Sbjct: 409 NGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCS-LNCQGLMPDIW 467
Query: 229 VFASLIKGL 237
+ +++ GL
Sbjct: 468 TYTTMMLGL 476
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 4/199 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+ D + H ++ R +P F ++S + + + + ++++M + + +
Sbjct: 61 KLDDSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCT 118
Query: 125 FNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LLN C ++ ++ L ++++ P ++ L++G R+ DA +FD+M+
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV 178
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+P +V + T+I GLC +VD AL L M + + PD + SLI GLC+ G
Sbjct: 179 GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRW 237
Query: 244 SLALGFKEEMVRNKIEMDA 262
S A M + +I D
Sbjct: 238 SDATRMVSCMTKREIYPDV 256
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
L+ A ++F M S V +++ L+N K++ LF ++ ++ V + +Y I
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + +L A ++F M+ + P ++T+ L++GLC ++++AL + DM +
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK-N 425
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+ D + +I+G+C GE++ A
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADA 450
>gi|302758538|ref|XP_002962692.1| hypothetical protein SELMODRAFT_62267 [Selaginella moellendorffii]
gi|300169553|gb|EFJ36155.1| hypothetical protein SELMODRAFT_62267 [Selaginella moellendorffii]
Length = 495
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 50 NLLHYDLIITKLGR----AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
L Y ++I LGR + FD Q+I H + I C ++ YG +
Sbjct: 17 ELATYLMLIEGLGRDHRVKEAFDLFQEI-HARGFTAKASSYSYIVCG-LAKYG---YFDE 71
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVS--PDACSYNIL 162
A+++F+EM V + S +LN GK+++ LF+ ME P+ +YN+L
Sbjct: 72 AVELFEEMIRRKVAPPLGSCIGILNGYCQDGGKMEQAIQLFRKMEGEYGCPPNTYAYNVL 131
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G R+E+ ++F EM ++ +P LVT+ T I GLC RVD+A+ +K++M++ +
Sbjct: 132 LTGLKKKDRVEEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQ-KS 190
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD V++ LI C VG++ EM+ K++ D
Sbjct: 191 CSPDNVVYSILINAFCKVGKIYEGEKLLAEMLEKKLQPD 229
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNI 161
+E ++F EM + + ++ T + + G++D M ++++K SPD Y+I
Sbjct: 141 VEEMREMFLEMKEKGCEPNLVTYCTYILGLCKAGRVDDAMVVKKEMIQKSCSPDNVVYSI 200
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ ++ + K+ EML+++LQP +V F +L+ L R +A +L MM
Sbjct: 201 LINAFCKVGKIYEGEKLLAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMME-Q 259
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KPDA + + ++ GE++ AL E V
Sbjct: 260 GCKPDAVIASVILDSFTKRGEVAQALELVNEFV 292
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 41/241 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y I L +A D+ + ++ + P+ +++ +I+ + + + ++
Sbjct: 159 NLVTYCTYILGLCKAGRVDDAMVVKKEMIQKS-CSPDNVVYSILINAFCKVGKIYEGEKL 217
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDAC----------- 157
EM +Q V F++L++ + G+ LF+ +ME+ PDA
Sbjct: 218 LAEMLEKKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRMMEQGCKPDAVIASVILDSFTK 277
Query: 158 -------------------------SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
S N L+ VV ++ED ++ M R +P
Sbjct: 278 RGEVAQALELVNEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRPLQC 337
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ TL+ LC EAL+L ++M D + +I+ LC + + A G EE
Sbjct: 338 SYATLLRELCRRKNAVEALELVKEMRAAGYTSVD---LSCVIEMLCKMKMVDEARGLYEE 394
Query: 253 M 253
M
Sbjct: 395 M 395
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM----EKYVSPDACSYN 160
AL++ EM + T + ++ + +D L++ M ++ + P +YN
Sbjct: 354 EALELVKEMRAAGY--TSVDLSCVIEMLCKMKMVDEARGLYEEMKSSQQQELLPSVSTYN 411
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ RL DA +F EM++ P + ++ L+ LC ++ + +L + ++ +
Sbjct: 412 ILLERLCGEGRLGDAKDLFQEMIESGRIPDVNSYEILVEALCKAGKIFQGHELFKQLISL 471
Query: 221 YNVKPDAQVFASLIKGLC 238
+ P +++ A+++ GLC
Sbjct: 472 GFI-PSSEMCATIVDGLC 488
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
D + L ++ ++ V P+ +Y +L+ G R+++A+ +F E+ R ++ ++
Sbjct: 1 DAIGVLREMQKRNVVPELATYLMLIEGLGRDHRVKEAFDLFQEIHARGFTAKASSYSYIV 60
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
GL DEA++L E+M+R V P ++ G C G
Sbjct: 61 CGLAKYGYFDEAVELFEEMIR-RKVAPPLGSCIGILNGYCQDG 102
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 15/149 (10%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
+E +++ M+S + S+ TLL + R + + +E A Y +
Sbjct: 317 VEDGVRLLKTMASRGSRPLQCSYATLLRELC------RRKNAVEALELVKEMRAAGYTSV 370
Query: 163 MHGCVVS-----RRLEDAWKVFDEMLKRRLQ---PTLVTFGTLIYGLCLELRVDEALKLK 214
CV+ + +++A +++EM + Q P++ T+ L+ LC E R+ +A L
Sbjct: 371 DLSCVIEMLCKMKMVDEARGLYEEMKSSQQQELLPSVSTYNILLERLCGEGRLGDAKDLF 430
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
++M+ + PD + L++ LC G++
Sbjct: 431 QEMIESGRI-PDVNSYEILVEALCKAGKI 458
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 7/216 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ + ++ L +A + + ++ ++ + P+ +I ++ + + +
Sbjct: 224 KKLQPDVVCFSSLVDCLDKAGRYGDAYRLFRRM-MEQGCKPDAVIASVILDSFTKRGEVA 282
Query: 105 HALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNIL 162
AL++ +E ++ + S N L+ ++ K++ L + M S P CSY L
Sbjct: 283 QALELVNEFVDRDLPLPSAGSINQLVKRIVVGDKVEDGVRLLKTMASRGSRPLQCSYATL 342
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ + +A ++ EM R T V +I LC VDEA L E+M
Sbjct: 343 LRELCRRKNAVEALELVKEM--RAAGYTSVDLSCVIEMLCKMKMVDEARGLYEEMKSSQQ 400
Query: 223 VK--PDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ P + L++ LC G L A +EM+ +
Sbjct: 401 QELLPSVSTYNILLERLCGEGRLGDAKDLFQEMIES 436
>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
Length = 414
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L R K ++ ++L +L+ D +P + + +VIS Y +A ++ A V+++M
Sbjct: 121 NILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDML 180
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ ++N L+N ++ ++ Q++ PD ++N L+ G +L+
Sbjct: 181 QSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLD 240
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
DA +++ EM + +QP + TF +I+ LC + R EAL L ++ ++ P ++ +
Sbjct: 241 DAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPI 300
Query: 234 IKGLCAVGELSLA 246
I LC G++ A
Sbjct: 301 IDILCKGGKVDEA 313
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 107/218 (49%), Gaps = 8/218 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
++ + YN L LI GRA+ + + D P+ F VI R L
Sbjct: 44 IEWYAYNNLLNTLI--AHGRAQ---DAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNL 98
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNI 161
+ AL++ + M+ F + N L++ + ++++ ++ + +++ P+ +Y
Sbjct: 99 QKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTS 158
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R++DA+ V+++ML+ +P VT+ LI G L ++ A+++ ++ ++
Sbjct: 159 VISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLI-LH 217
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ PD F SLI G C G+L A+ EM ++ I+
Sbjct: 218 SCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQ 255
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 2/175 (1%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ F V A LL+ A + + S F + ++N LLN ++ G+
Sbjct: 8 VPDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVA 67
Query: 144 LFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF+ I + SPD S+N+++ G L+ A ++ + M + P +T L+ GL
Sbjct: 68 LFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGL 127
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C +V++ ++ + R P+ + S+I G C G + A +M+++
Sbjct: 128 CRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182
>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 367
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNI 161
L+ A+ V + M + +N L+N ++ K D + L ++ + SP +Y+
Sbjct: 145 LDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXHFSPTVVTYSX 204
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
J++G R +A+ + EML + L P+++T+ LI GLCL+ +VD+AL+L ++
Sbjct: 205 JINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQVIS-K 263
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
KPD Q+ +I GLC+VG++ LAL
Sbjct: 264 GFKPDVQMHNIMIHGLCSVGKMQLAL 289
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
DEV I +K ++ V + I + ++ + + L ++ V + +++
Sbjct: 76 DEVISIWELMK-ESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGVLDAFAYSA 134
Query: 128 LLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++N + K+D+ + M K P+A YN L++G V + + EDA +V EM
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTXH 194
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
PT+VT+ JI GLC R EA L ++M+ + P ++ LIKGLC
Sbjct: 195 FSPTVVTYSXJINGLCKGERFGEAYDLVKEMLD-KGLNPSVITYSLLIKGLC 245
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 80/160 (50%), Gaps = 1/160 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ E+ V +N +LN G+I +L+++M + S S+NI+
Sbjct: 6 IDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREGSRSVSSFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
G + ++++ +++ M + +T+G L++G C +++++ + E R
Sbjct: 66 XRGLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGG 125
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V DA ++++I GLC +L A+ M++N + +A
Sbjct: 126 V-LDAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNA 164
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L A F++ ++L ++ P + + +I+ + A + EM
Sbjct: 167 YNALINGLVGASKFEDAIRVLREMG-TXHFSPTVVTYSXJINGLCKGERFGEAYDLVKEM 225
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ +V +++ L+ + K+D+ L+ Q++ K PD +NI++HG ++
Sbjct: 226 LDKGLNPSVITYSLLIKGLCLDRKVDKALQLWNQVISKGFKPDVQMHNIMIHGLCSVGKM 285
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++ M + P LVT TL+ G + V AL + ++R ++PD +
Sbjct: 286 QLALSLY-YMNRWDCAPNLVTHNTLMEGFYKDGDVRNALVIWARILR-NGLQPDIISYNI 343
Query: 233 LIKGLCAVGELSLALGFKEEMV 254
+KGLC+ +S A+ F ++ V
Sbjct: 344 TLKGLCSCNRISGAILFLQDAV 365
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F ++ Y JI L + + F E ++ ++ D + P I + +I R ++ A
Sbjct: 195 FSPTVVTYSXJINGLCKGERFGEAYDLVKEML-DKGLNPSVITYSLLIKGLCLDRKVDKA 253
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
LQ+++++ S + V+ N +++ + + GK+ L+ + +P+ ++N LM G
Sbjct: 254 LQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYYMNRWDCAPNLVTHNTLMEGF 313
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ +A ++ +L+ LQP ++++ + GLC R+ A+ +D
Sbjct: 314 YKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSCNRISGAILFLQD 363
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 3 KAKPTSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K P +P + S+L RL ALQ F + + + + ++ +DL I
Sbjct: 48 KTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH--------REYVHDASSFDLAIDIA 99
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + V ++H+++ R+ P F V Y + + A+++F M +
Sbjct: 100 ARLHIHPTVWSLIHRMR-SLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQD 158
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ SFNT+L+ + ++++ +LF+ + S D +YN++++G + +R A +V E
Sbjct: 159 LASFNTILDVLCKSKRVEKAYELFRALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKE 218
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M+ R + P L T+ T++ G ++ +A + +M + N + D + +++ G G
Sbjct: 219 MVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKK-RNCEIDVVTYTTVVHGFGVAG 277
Query: 242 ELSLALGFKEEMVRNKI 258
E+ +EM+R +
Sbjct: 278 EIKRTRNVFDEMIREGV 294
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ I+ L ++K ++ ++ L+ R + + + +++ + + AL+V
Sbjct: 158 DLASFNTILDVLCKSKRVEKAYELFRALR--GRFSADTVTYNVIVNGWCLIKRTPKALEV 215
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + + ++NT+L G+I + + F M+K D +Y ++HG V
Sbjct: 216 LKEMVDRGINPNLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGV 275
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ VFDEM++ + P++ T+ I LC + V+ A+ + E+M+R +P+
Sbjct: 276 AGEIKRTRNVFDEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVR-KGYEPNVT 334
Query: 229 VFASLIKGLCAVGELS 244
+ LI+GL G+ S
Sbjct: 335 TYNVLIRGLFHAGKFS 350
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 74/161 (45%), Gaps = 2/161 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ G A + + ++ + V+P + I + +E+A+ +
Sbjct: 262 DVVTYTTVVHGFGVAGEIKRTRNVFDEMIREG-VLPSVATYNAFIQVLCKKDSVENAVVM 320
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + V ++N L+ + GK R +L Q ME + P+ +YN+++
Sbjct: 321 FEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 380
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+E A +F++M P L T+ LI G+ + R ++
Sbjct: 381 CSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKRSED 421
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 3/221 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A+ + + +++ + +I L + + + + ++ +K V E FC ++ Y RA
Sbjct: 46 AEKQRHYNHSVKAFHTVIDSLAKIRQYQLMWDVVKVMKSKRMVNVE--TFCIIMRKYARA 103
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
+ +E A+ F+ M ++V + +FN LL+A+ + + ++F ++ PD+ +Y+
Sbjct: 104 QKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTYS 163
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL+ G L A ++F EM+ +P +VT+G ++ LC RVDEAL + +M
Sbjct: 164 ILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDST 223
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KP +++ L+ + A+ EM N IE D
Sbjct: 224 V-CKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPD 263
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 121/252 (48%), Gaps = 16/252 (6%)
Query: 17 RLQKDPKLALQLFKNPNPNPNNTEAQPL------KPFRYNLLHYDLIITKLGRAKMFDEV 70
R D K L + +PN +A+ + R +++ Y +++ L +A DE
Sbjct: 154 RFVPDSKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEA 213
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
I++++ T P I+ ++ YG +E A+ F EM + ++ V +N L+
Sbjct: 214 LGIVNEM-DSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIG 272
Query: 131 AMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
A K +R+ ++++++ K V+P++ ++NI++ + ++A++VF M+K
Sbjct: 273 AFC---KANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKV- 328
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+P T+ +I C + +ALK+ + M++ P F LI GLC G+++ A
Sbjct: 329 CEPDADTYTMMIKMFCERDELKKALKVWK-YMKLKRFMPSMHTFQVLINGLCEKGDVTQA 387
Query: 247 LGFKEEMVRNKI 258
EEM+ I
Sbjct: 388 CVLLEEMIEKGI 399
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 93/198 (46%), Gaps = 4/198 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++ +++ L ++K + Q+I +K R VP+ + ++ +G+ L A ++
Sbjct: 124 NLAAFNGLLSALCKSKNVRKAQEIFDSIKD--RFVPDSKTYSILLEGWGKDPNLPKAREI 181
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVV 168
F EM S + + ++ +++ + G++D + M+ V P Y++L+H +
Sbjct: 182 FREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGI 241
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+EDA F EM ++P + + LI C R+ ++ + M V P+++
Sbjct: 242 ENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANRLKNVYRVLNE-MDCKGVTPNSR 300
Query: 229 VFASLIKGLCAVGELSLA 246
F ++ L GE A
Sbjct: 301 TFNIILSSLIGRGETDEA 318
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++T +P PF Y++L + I ++ D V L + + P+ ++ +I
Sbjct: 221 DSTVCKP-TPFIYSVLVHTYGIEN----RIEDAVSTFLEM--ENNGIEPDVAVYNALIGA 273
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
+ +A L++ +V +EM V ++FN +L++++ G+ D +F M K PDA
Sbjct: 274 FCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKVCEPDA 333
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y +++ L+ A KV+ M +R P++ TF LI GLC + V +A L E+
Sbjct: 334 DTYTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEE 393
Query: 217 MMRVYNVKPDAQVFASL 233
M+ ++P F L
Sbjct: 394 MIE-KGIRPSGVTFGRL 409
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L +++ ++ P +I+ +I + + AL +
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + G+ + L M E+ ++P+ +++ L+ V
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 397
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREM 422
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL +KN N N K R N++ Y+ +I L + + ++L + + ++
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + L A +++DEM ++ + ++++L+N ++D +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++M K P+ +YN L+ G ++R+++ ++F EM +R L VT+ TLI+G
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D A + + M+ V PD ++ L+ GLC G++ AL E + R+K+E D
Sbjct: 444 ARECDNAQIVFKQMVS-DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD 500
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK DE ++ ++ +V + + +I + +AR ++A V
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQ-RGLVGNTVTYTTLIHGFFQARECDNAQIV 453
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK++ +F+ +++ + PD +YNI++ G
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P +VT+ T++ G C + +EA L + M+ PD+
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE-MKEEGPLPDSG 572
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI+ G+ + + EM + DA
Sbjct: 573 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 7/215 (3%)
Query: 49 YNLLHYD---LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
++ + YD + I +L K+ D V +K +R P + F ++S + +
Sbjct: 42 FSGVRYDYRKISINRLNDLKLDDAVNLFGDMVK--SRPFPSIVEFSKLLSAIAKMNKFDL 99
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMH 164
+ + ++M + + + +++ L+N ++ + L ++M+ PD + N L++
Sbjct: 100 VISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R+ DA + +M++ QP TF TLI+GL R EA+ L D M V +
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV-DRMVVKGCQ 218
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD + ++ GLC G++ LAL ++M + KIE
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q++ + + + +I+ + R L
Sbjct: 76 RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLS 133
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
AL V +M + + + N+LLN +I D ++ + Q++E PD+ ++N L+
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG R +A + D M+ + QP LVT+G ++ GLC +D AL L + M + +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKI 252
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P ++ ++I LC ++ AL EM
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + V++ + ++ AL + +M ++ V +NT+++A+ ++ +L
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M+ K + P+ +YN L+ R DA ++ +M++R++ P +VTF LI
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA KL ++M++ ++ PD ++SLI G C
Sbjct: 339 EGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFC 372
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS-- 114
++T L R F+ + +++ ++ + + P + F +I+ + R ++ AL+V ++MS
Sbjct: 311 LLTGLAREGNFNRMNELMEKMV-EMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGG 369
Query: 115 ------SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGC 166
S +V+ V +NTL++ + G+ L + M +K +PD +YN L+ G
Sbjct: 370 KESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGF 429
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +E ++FDEM K + P +VT TL+ G+C RV A+ + R +K D
Sbjct: 430 CKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQR-RGMKGD 488
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
A + +LI C V A+ EM+++ DA
Sbjct: 489 AVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDA 524
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 105/215 (48%), Gaps = 3/215 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EAQ + + + + Y +I F++ ++ +++ + P+ I++ +IS + +
Sbjct: 479 EAQR-RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLK-SGCSPDAIVYYTLISGFSQ 536
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
A + A V E+ ++ +NTL+ K R+ ++ + ME+ + PD +
Sbjct: 537 AGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTIT 596
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ + L+ A KV +M+K + PT+ T+G +I CL +EA+++ +DM
Sbjct: 597 YNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMK 656
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V P+ ++ LI LC ++ A+ E+M
Sbjct: 657 AASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDM 691
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + E ++ +++ P+ I + +I + +A +E ++FDEM
Sbjct: 386 YNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEM 445
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V V + NTL+ M G++ + F + + + DA +Y L++
Sbjct: 446 NKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNF 505
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDMMRVYNVKPDAQVFA 231
E A ++F+EMLK P + + TLI G R+ D + L E ++ ++PD +
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAE--LKKLGIRPDTVCYN 563
Query: 232 SLIKGLC 238
+LI G C
Sbjct: 564 TLIGGFC 570
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
R R +F EM + N+LL + G +RM +L + M E + P+
Sbjct: 282 RNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVV 341
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEM--------LKRRLQPTLVTFGTLIYGLCLELRVDE 209
++ IL++ RR++DA +V ++M + ++P +V + TLI GLC R E
Sbjct: 342 TFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQE 401
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
L L E M PD + LI G C GE+ +EM + +
Sbjct: 402 GLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGV 450
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LKP + + Y+ +I + Q+++ ++ VVP + VI+ Y
Sbjct: 586 EEAGLKP---DTITYNTLIAYASKNGDLKFAQKVMRKMIK-AGVVPTVATYGAVINAYCL 641
Query: 100 ARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
A+++F +M ++ V +N L+N++ K+ L + M+ + V+P+
Sbjct: 642 NGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTT 701
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+YN + G + LE ++ D M++ P +T
Sbjct: 702 TYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYIT 737
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 73 ILHQLKHDTR---------VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
IL QL TR V+P+ + ++ + ++ A VF+ M+ V+ +
Sbjct: 275 ILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIS 334
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++N L++ ++ +F+IM + +P SYNIL++G SRR+++A + EM
Sbjct: 335 TYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEM 394
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+ L P VT+ TL+ GLC R EAL + ++M Y + P+ ++ L+ G C G
Sbjct: 395 YHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCS-YGLLPNLVTYSILLDGFCKHGH 453
Query: 243 LSLALGFKEEMVRNKIE 259
L AL + M K+E
Sbjct: 454 LDEALKLLKSMQEKKLE 470
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 104/217 (47%), Gaps = 5/217 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHA 106
R ++ + + + K + V + +Q+ D V + NV I+ R ++ A
Sbjct: 85 RPSVAEFGKFLGSFAKKKQYSTVVSLCNQM--DLFGVTHNVYSLNVLINCLCRLNHVDFA 142
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+ + +M + T +FN L+N + GKI +LF +++ + P+ SYN +++G
Sbjct: 143 VSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIING 202
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ A VF +M + +P +VT+ T+I LC + V++A++ +M+ + P
Sbjct: 203 LCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLD-RGIPP 261
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + ++ G C +G+L+ A +EMV + D
Sbjct: 262 NVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDT 298
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 3/192 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+++ L + M E + + + + V P + ++ Y RL+ A +VF+ M
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMT-EKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIR 361
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
V S+N L+N ++D L ++ K ++PD +Y+ LM G R ++
Sbjct: 362 QGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKE 421
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM L P LVT+ L+ G C +DEALKL + M ++P+ LI
Sbjct: 422 ALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQE-KKLEPNIVHHTILI 480
Query: 235 KGLCAVGELSLA 246
+G+ G+L +A
Sbjct: 481 EGMFIAGKLEVA 492
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 105/212 (49%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF---YGRARLLEHALQVF 110
Y+++I +++ DE + +L ++ H + P+ + + ++ +GR + AL +F
Sbjct: 371 YNILINGFCKSRRMDEAKSLLAEMYHKA-LNPDTVTYSTLMQGLCQFGRPK---EALNIF 426
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
EM S+ + + +++ LL+ G +D L + M EK + P+ + IL+ G ++
Sbjct: 427 KEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIA 486
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+LE A ++F ++ ++PT+ T+ +I GL E DEA L M P++
Sbjct: 487 GKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRK-MEDDGFLPNSCS 545
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +I+G + S A+ +EMV + +
Sbjct: 546 YNVMIQGFLQNQDSSTAIRLIDEMVGKRFSAN 577
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P I + +I+ + A+ VF +M + V ++NT+++++ + D M
Sbjct: 191 PNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEF 250
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++++ + P+ +YN ++HG + +L +A ++F EM+ R + P VT L+ GLC
Sbjct: 251 LSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCK 310
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E V EA +L + M V+P+ + +L+ G C
Sbjct: 311 EGMVSEA-RLVFETMTEKGVEPNISTYNALMDGYC 344
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 22 PKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
PK AL +FK + L P NL+ Y +++ + DE ++L ++ +
Sbjct: 419 PKEALNIFKE-------MCSYGLLP---NLVTYSILLDGFCKHGHLDEALKLLKSMQ-EK 467
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
++ P + +I A LE A ++F ++ + ++ T++++ ++ +L G D
Sbjct: 468 KLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEA 527
Query: 142 TDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DLF+ ME P++CSYN+++ G + ++ A ++ DEM+ +R L TF L+
Sbjct: 528 YDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+DL++ + +M DE + + +K E CN +++ R +E+A + +
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTET--CNHILTLLSRLNRIENAWVFYAD 215
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M ++ V +FN ++N + GK+ + IME + + P +YN L+ G + R
Sbjct: 216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + EM + QP + T+ ++ +C E R E L+ M+ + PD+ +
Sbjct: 276 IEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLR----EMKEIGLVPDSVSYN 331
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LI+G G+L +A +++EMV+
Sbjct: 332 ILIRGCSNNGDLEMAFAYRDEMVK 355
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
KL +AK F + ++ + P + + ++ + +E A + EM S Q
Sbjct: 240 KLKKAKGFLGIMEVFG-------IKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
++++N +L+ M G+ + L ++ E + PD+ SYNIL+ GC + LE A+
Sbjct: 293 PDMQTYNPILSWMCNEGRASEV--LREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYR 350
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
DEM+K+ + PT T+ TLI+GL +E +++ A L + +R + D+ + LI G C
Sbjct: 351 DEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIRE-IREKGIVLDSVTYNILINGYCQ 409
Query: 240 VGELSLALGFKEEMVRNKIE 259
G+ A +EM+ + I+
Sbjct: 410 HGDAKKAFALHDEMMTDGIQ 429
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 45 KPFRYNLLHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
K F+ ++ Y+ I++ + GRA ++L ++K + +VP+ + + +I
Sbjct: 289 KGFQPDMQTYNPILSWMCNEGRA------SEVLREMK-EIGLVPDSVSYNILIRGCSNNG 341
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
LE A DEM + T ++NTL++ + KI+ L +I EK + D+ +YN
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++G + A+ + DEM+ +QPT T+ +LIY LC + + EA +L E ++
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG- 460
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+KPD + +L+ G CA+G + A +EM
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +IL + + +V + + + +I+ Y + + A + DEM + +Q T ++ +L
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSL 438
Query: 129 LNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + K +LF+ ++ K + PD N LM G ++ A+ + EM +
Sbjct: 439 IYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI 498
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P VT+ L+ GLC E + +EA +L +M R +KPD + +LI G G+ A
Sbjct: 499 NPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 557
Query: 248 GFKEEMV 254
++EM+
Sbjct: 558 MVRDEML 564
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH + P + + ++I R A ++F+++ ++ + NTL++
Sbjct: 419 LHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHC 478
Query: 134 TCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G +DR L + M+ ++PD +YN LM G + E+A ++ EM +R ++P +
Sbjct: 479 AIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI 538
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ TLI G + A ++++M+ + P + +L+KGL E LA EE
Sbjct: 539 SYNTLISGYSKKGDTKHAFMVRDEMLSL-GFNPTLLTYNALLKGLSKNQEGELA----EE 593
Query: 253 MVR 255
++R
Sbjct: 594 LLR 596
>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g12700, mitochondrial-like
[Glycine max]
Length = 555
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 16/257 (6%)
Query: 1 MNKAKPTSPFRLASLLR-LQKDPKL--ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLI 57
M K P F SL+ L K+ + ALQL + E ++P NL+ Y +
Sbjct: 152 MAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQK-------MEEDLVRP---NLITYSTV 201
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
I L + ++ + + L L ++ + + + ++I A ++ M N
Sbjct: 202 IDGLCKDRLIADALR-LFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGN 260
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAW 176
+ +FN L++A+ G+I +F +M K PD +YN LM G +S + +A
Sbjct: 261 INPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEAR 320
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
++F+ M+KR L+P ++ + LI G C VDEA+ L ++ +R N+ P+ + SLI G
Sbjct: 321 ELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKE-IRCKNLVPNLATYNSLIDG 379
Query: 237 LCAVGELSLALGFKEEM 253
LC +G +S +EM
Sbjct: 380 LCKLGRMSCVQELVDEM 396
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+D ++ + R + + QL H + P +I+ Y L A + +
Sbjct: 58 FDKLLGAIVRMGHYPTAISLFSQL-HSKGITPSIATLTILINCYCHQAHLSFAFSLLGTI 116
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
Q + +FNTL+N G + + M +M K D SY L++G + +
Sbjct: 117 LKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQT 176
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
DA ++ +M + ++P L+T+ T+I GLC + + +AL+L ++ + D + S
Sbjct: 177 RDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFS-LVTSRGILVDVVAYNS 235
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G C+VG+ A MVR I D
Sbjct: 236 LIHGCCSVGQWREATRLLTMMVRGNINPD 264
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Query: 83 VVPEEI---IFCNVISFYG-----RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
V+P I F + F+G + ++ L F+ M + + F+ LL A++
Sbjct: 8 VLPRSIHILFFSQHVRFFGHLHPPKFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVR 67
Query: 135 CGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
G LF Q+ K ++P + IL++ L A+ + +LK QP +VT
Sbjct: 68 MGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVT 127
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI G C+ V +A+ + D+M D + SLI GLC G+ AL ++M
Sbjct: 128 FNTLINGFCINGMVSKAMAFRLDLM-AKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKM 186
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMH 164
ALQ+ +M V+ + +++T+++ + I LF + + + D +YN L+H
Sbjct: 179 ALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIH 238
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
GC + +A ++ M++ + P TF L+ LC E R+ EA + MM+ K
Sbjct: 239 GCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMK-RGEK 297
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + +L++G C +S A MV+ +E D
Sbjct: 298 PDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDV 335
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 92/212 (43%), Gaps = 2/212 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L+Y+++I + M DE + +++ +VP + ++I + + ++
Sbjct: 334 DVLNYNVLINGYCKIDMVDEAMVLFKEIRCKN-LVPNLATYNSLIDGLCKLGRMSCVQEL 392
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
DEM + ++N L+A ++ LF+ + + + PD Y++++
Sbjct: 393 VDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQGIWPDFYMYDVIVENFCKG 452
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+L+ A + +L P + T+ +I LC + DEA+ L M + PDA
Sbjct: 453 EKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSK-MDDNDCPPDAVT 511
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F ++I L E A + EM+ + D
Sbjct: 512 FETIIGALQERNETDKAEKLRLEMIERGLVND 543
>gi|147840633|emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]
Length = 416
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
R S+LR + DP AL+++ + + + + PL RY DL + +L +++ F ++
Sbjct: 41 RAKSILRSEFDPDRALEIYSSVSKHYTS----PLAS-RYA---QDLTVKRLAKSRRFADI 92
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+ ++ K+D ++ +E +I YG A + +HAL+ F++M R+ SFN LL+
Sbjct: 93 ETLIESHKNDPKIT-QEPYLSTLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLS 151
Query: 131 AMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
A D++ F +I +Y + PD SY IL+ S + A + EM ++ ++
Sbjct: 152 ACNQSKLFDQVPKFFEEIPRRYGIXPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVE 211
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------VYNVK 224
T VTF T++ L + + D A K+ +M + YNVK
Sbjct: 212 ITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVK 254
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 9/211 (4%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ ++ +++ ++K+FD+V + ++ + P++I + ++ Y + L + A+ +
Sbjct: 144 ISFNALLSACNQSKLFDQVPKFFEEIPRRYGIXPDKISYGILVKSYCESGLSDKAISMLK 203
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVV 168
EM V+ T +F T+L+A+ G+ DR ++ M K D +YN+ HG
Sbjct: 204 EMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVKIMFAHGG-- 261
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E+ + DEM L+P +++ L+ C +DEA K+ ++ P+A
Sbjct: 262 --DPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMMDEAKKVYAELEET-GCHPNAA 318
Query: 229 VFASLIKGLCAVGELSLALG-FKEEMVRNKI 258
F +LI LC G+ FK+ R KI
Sbjct: 319 TFRTLIYYLCRSGDFETGYKVFKQSAFRRKI 349
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ I+ L + D +++ H++ + ++ NV + E+ + DEM
Sbjct: 217 FTTILDALYKQGQSDRAEKVWHEMAKKGCL---DVGAYNVKIMFAHGGDPENVKALIDEM 273
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
S+ ++ S+N L+ + G +D ++ ++ E P+A ++ L++ S
Sbjct: 274 SNAGLKPDTISYNYLMTSYCKSGMMDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDF 333
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
E +KVF + RR P T L+ GL + + EA L
Sbjct: 334 ETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKKTKEAKGL 374
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 104/215 (48%), Gaps = 1/215 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+R++ +Y ++ + + F V +L +++ D V+ +F +I + ARL+E A
Sbjct: 136 YRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSVLITSELFIVLIRRFASARLVEKA 195
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
++V DEM + + F LL+A+ G + + LF+ M SP + L++G
Sbjct: 196 IEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAASLFEDMRVRFSPSLRHFTSLLYGW 255
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+L +A V +M + +P +V F L+ + ++ +A L ++M+R +P+
Sbjct: 256 CREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMVR-KGCEPN 314
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
A + +I+ C+ ++ A+ EM R E D
Sbjct: 315 ANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEAD 349
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 41/211 (19%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
R P F +++ + R L A V +M + + FN LL+A GK
Sbjct: 239 VRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGK--- 295
Query: 141 MTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
MTD F ++++ V P+A SY I++ ++++A +VF EM + + +VT+
Sbjct: 296 MTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTA 355
Query: 197 LIYGLCLELRVD------EALKLKEDM----------------------------MRVYN 222
LI G C +++ +A+K K M MR+
Sbjct: 356 LISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMRMVG 415
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD ++ +I+ C +GE+ + EM
Sbjct: 416 CVPDLSIYNVVIRLACKLGEVKQGVQIWNEM 446
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ N + Y ++ L ++ H+ K P+ I++ +IS +A LE A
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ M + K++N L+ ++ +L Q M E + PD C+YN L+ G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ +M+ QP+++TFGTL++G C ++DEAL++ M + P+
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDE-SGIHPN 492
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ +LI LC G++ LA+ +EM
Sbjct: 493 NVIYNTLIDFLCKRGDVDLAIELFDEM 519
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVF 179
V +FN++L A+ + M ++ +M+ S PD +Y IL++G + R+ DA +V
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195
Query: 180 DEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKED-MMRVYNVKPDAQVFASLIKG 236
D M ++ L +P +VT T++ GLC RV EAL E M V+ P+ + LI
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDA 255
Query: 237 LCAVGELSLALGFKEEM 253
C VG +S+A E+M
Sbjct: 256 FCRVGNISMAYELVEKM 272
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 115/259 (44%), Gaps = 21/259 (8%)
Query: 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPN-NTEAQPLKPFRYNLLHYDLIITKLGRA 64
P++P A L +L L F +P P + ++ ++ I+ L R
Sbjct: 97 PSAPLLSAILSKL-------LARFSSPEPAARFLAASLAAGAPAPDVFAFNSILAALARV 149
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS--SFNVQRTV 122
+ + +I ++ V P+ + + +++ +A + AL+V D MS +++ V
Sbjct: 150 RDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDV 209
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAW 176
+ NT+++ + G R+ + +E+ +S P+ +YN L+ + A+
Sbjct: 210 VTLNTVVDGLCKSG---RVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY-NVKPDAQVFASLIK 235
++ ++M + +VT T++ GLC R AL+ + V+ K +A +++L+
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326
Query: 236 GLCAVGELSLALG-FKEEM 253
L + +A+ F E+M
Sbjct: 327 ALLHTNNVGMAMELFHEKM 345
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R ++ Y+ +++ +A F V ++L ++ D P I F ++ Y + ++ A
Sbjct: 419 IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDG-CQPSVITFGTLVHGYCKVGKIDEA 477
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
L++ M + +NTL++ + G +D +LF M EK V + ++N L+ G
Sbjct: 478 LRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E A+++ D+M + R P VT L+
Sbjct: 538 LRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 100/185 (54%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II +L + KM DE + ++++ + P+++ + ++I ++ + HA ++ D+M
Sbjct: 313 YTIIIKRLCKIKMVDEALSLFNEMRCKG-ITPDKVTYSSLIDGLCKSERISHAWELLDQM 371
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
+ V ++ + L+A+ ++D+ L + I ++ + P+ +YNIL+ G R
Sbjct: 372 HARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRF 431
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A +F ++L + + T+ T+ +I GLCLE DEA+ L E M PD + +
Sbjct: 432 ENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEK-MEDNGCTPDVVTYET 490
Query: 233 LIKGL 237
+I+ L
Sbjct: 491 IIRAL 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 20/207 (9%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y II L + K+ E ++ Q+ +V P+ + F +I + + A +
Sbjct: 187 NVVMYSTIIDSLCKEKLVTEAYELYSQMI-VKKVSPDVVTFSALIYGFCMVGQFKEAFGL 245
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCG-----------------KIDRMTDLFQIMEKY- 151
F EM N+ V +FN L++A+ G ++++ +F I+ K
Sbjct: 246 FHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRR 305
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V+PD SY I++ + +++A +F+EM + + P VT+ +LI GLC R+ A
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAW 365
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLC 238
+L D M D + S + LC
Sbjct: 366 ELL-DQMHARGQPADVITYTSFLHALC 391
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + F VI+ Y ++ A V ++ + TL+ + GK+
Sbjct: 79 ITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEAL 138
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++ + + SY IL++G A +V ++ + + +V + T+I L
Sbjct: 139 HFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSL 198
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C E V EA +L M+ V V PD F++LI G C VG+ A G EMV I D
Sbjct: 199 CKEKLVTEAYELYSQMI-VKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257
Query: 262 A 262
Sbjct: 258 V 258
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMH 164
ALQV ++ V V ++T+++++ + +L+ Q++ K VSPD +++ L++
Sbjct: 172 ALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIY 231
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----- 219
G + + ++A+ +F EM+ + P + TF L+ LC E E + MM+
Sbjct: 232 GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQV 291
Query: 220 -----VYN------VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V+N V PD + +IK LC + + AL EM
Sbjct: 292 NKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEM 336
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 97 YGRARLLEHALQVFDEMSSF------NVQRTVKSFNTLLNAMLTCGKIDR--MTDLFQIM 148
Y ++ + + V D +SSF N ++ FN +L +++ + L+ +
Sbjct: 15 YSHSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRL 74
Query: 149 E-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ ++P ++N +++ ++ A+ V ++LK P +T TLI GLCL +V
Sbjct: 75 QLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKV 134
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
EAL D + + + + LI GLC +GE AL
Sbjct: 135 HEALHF-HDHVIARGFRLNEVSYGILINGLCKMGETRAAL 173
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 99/207 (47%), Gaps = 3/207 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+ N + Y ++ L ++ H+ K P+ I++ +IS +A LE A
Sbjct: 315 KGNAVTYSTLVGALLHTNNVGMAMELFHE-KMSEGHSPDAIMYFTMISGLTQAGRLEDAC 373
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ M + K++N L+ ++ +L Q M E + PD C+YN L+ G
Sbjct: 374 SMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGS 433
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ ++ +M+ QP+++TFGTL++G C ++DEAL++ M + P+
Sbjct: 434 CKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDE-SGIHPN 492
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ +LI LC G++ LA+ +EM
Sbjct: 493 NVIYNTLIDFLCKRGDVDLAIELFDEM 519
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVF 179
V +FN++L A+ + M ++ +M+ S PD +Y IL++G + R+ DA +V
Sbjct: 136 VFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVL 195
Query: 180 DEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKED-MMRVYNVKPDAQVFASLIKG 236
D M ++ L +P +VT T++ GLC RV EAL E M V+ P+ + LI
Sbjct: 196 DGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDA 255
Query: 237 LCAVGELSLALGFKEEM 253
C VG +S+A E+M
Sbjct: 256 FCRVGNISMAYELVEKM 272
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 101/214 (47%), Gaps = 13/214 (6%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ ++ I+ L R + + +I ++ V P+ + + +++ +A + AL+V
Sbjct: 135 DVFAFNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRV 194
Query: 110 FDEMS--SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNI 161
D MS +++ V + NT+++ + G R+ + +E+ +S P+ +YN
Sbjct: 195 LDGMSRQDLDIRPDVVTLNTVVDGLCKSG---RVQEALAFVEQRMSSVHGCPPNTVTYNC 251
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ + A+++ ++M + +VT T++ GLC R AL+ + V+
Sbjct: 252 LIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVW 311
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLALG-FKEEM 253
K +A +++L+ L + +A+ F E+M
Sbjct: 312 PEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKM 345
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R ++ Y+ +++ +A F V ++L ++ D P I F ++ Y + ++ A
Sbjct: 419 IRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDG-CQPSVITFGTLVHGYCKVGKIDEA 477
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
L++ M + +NTL++ + G +D +LF M EK V + ++N L+ G
Sbjct: 478 LRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKG 537
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E A+++ D+M + R P VT L+
Sbjct: 538 LRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ + + + +AR + A +VF+EM + ++N +++ + G ++
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 300
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ M Y +SPDA +Y LM+G RL++A + DEM L+P +V + TL+ G
Sbjct: 301 GFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGF 360
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E + EA + +M+ V+P+ ++ +LI+GLC +G+L A EM++
Sbjct: 361 MKEGKAAEAFDILNEMISA-GVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L R++ + +L +++ + +VP+ I+ ++IS + +E A+ + DEM
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNG-LVPDLHIYSSLISGLCKMADMEKAVGLLDEM 691
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ ++ + +N L++ G I R ++F I+ K + P+ +Y L+ G + +
Sbjct: 692 AKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDI 751
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFA 231
DA+ ++ +ML R + P + L G +++AL L E+M R Y +F+
Sbjct: 752 TDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY---AHVSLFS 808
Query: 232 SLIKGLCAVGEL 243
+L++G C G L
Sbjct: 809 TLVRGFCKRGRL 820
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ L + E + +L ++ + + P +++ ++ + + A + +EM
Sbjct: 318 YGALMNGLCKGGRLKEAKALLDEMSC-SGLKPNVVVYATLVDGFMKEGKAAEAFDILNEM 376
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
S VQ ++ L+ + G++ R + L M K PD +Y+ LM G
Sbjct: 377 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDK 436
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A+++ +EM + P T+G +I GLC EA L E+M+ +KP+A ++A
Sbjct: 437 DGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMIS-EGLKPNAFMYAP 495
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKI 258
LI G G +SLA E M + +
Sbjct: 496 LIIGHSKEGHISLACESLENMTKANV 521
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I+ L R+ +E ++ D + P+ + +++ + L+ A +
Sbjct: 279 NEVTYNVMISGLCRSGAVEEAFGFKEEMV-DYGLSPDAFTYGALMNGLCKGGRLKEAKAL 337
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
DEMS ++ V + TL++ + GK D+ +++ V P+ Y+ L+ G
Sbjct: 338 LDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCK 397
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L A K+ +EM+K +P T+ L+ G D A +L +M R + P+A
Sbjct: 398 IGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEM-RNSGILPNAY 456
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +I GLC GE A EEM+ ++ +A
Sbjct: 457 TYGIMINGLCQNGESKEAGNLLEEMISEGLKPNA 490
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 107/245 (43%), Gaps = 36/245 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y ++I L + E +L ++ + + P ++ +I + + + A +
Sbjct: 454 NAYTYGIMINGLCQNGESKEAGNLLEEMISEG-LKPNAFMYAPLIIGHSKEGHISLACES 512
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ M+ NV + +N+L+ + T G+I+ + + Q+ ++ + PD +Y+ L+HG
Sbjct: 513 LENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 572
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM--------RV 220
+R LE A ++ +ML L+P T+ L+ G ++ + + M+ +
Sbjct: 573 TRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHI 632
Query: 221 YNV--------------------------KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y + PD +++SLI GLC + ++ A+G +EM
Sbjct: 633 YGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMA 692
Query: 255 RNKIE 259
+ +E
Sbjct: 693 KEGLE 697
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I+ VI R+ +E A V E+ + + +++L++ + +++ L
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGL 687
Query: 145 FQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
M K + P YN L+ G S + A VFD +L + L P VT+ LI G C
Sbjct: 688 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCK 747
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ +A L +DM+ + PDA V+ L G +L AL EEM
Sbjct: 748 NGDITDAFDLYKDMLD-RGIAPDAFVYNVLATGCSDAADLEQALFLTEEM 796
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
QP K NL+ I +LGRA K+ +E+ ++ H+ P+ + ++ + +
Sbjct: 382 QPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR--------PDTFTYHPLMQGHFQH 433
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSY 159
+ A ++ +EM + + ++ ++N + G+ +L + ++ + + P+A Y
Sbjct: 434 YDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ G + A + + M K + P L + +LI GL R++EA + + +
Sbjct: 494 APLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQK 553
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ PD ++ LI G C L A ++M+ + ++ +A
Sbjct: 554 -RGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNA 595
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N L+ + + +E WK+ M + P + T+ T + C D A K+ E+M R
Sbjct: 214 NGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRR 273
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + + +I GLC G + A GFKEEMV + DA
Sbjct: 274 -RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDA 315
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 107/214 (50%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y + L + ++LH++ + + + ++I+ +A L+ A++
Sbjct: 468 NVVTYTALSDGLCKQGDVQAANELLHEMSNKGLEL-NACTYNSLINGLCKAGYLDQAMRT 526
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+M + ++ V ++ TL++A+ G++DR DL Q +++ + P +YN+LM+G +
Sbjct: 527 MADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S R+E K+ + ML++ + P T+ +L+ C+ + ++ + M NV+P+
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCS-RNVEPNEN 645
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LIKG C + A F EM+ + A
Sbjct: 646 TYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTA 679
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 21/219 (9%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-L 103
K F + +DL++ L A + V+Q + PE CN + +RL L
Sbjct: 201 KAFSSDPASFDLLLLCLPSAPLLRRVRQ------YGISPSPEA---CNAV----LSRLPL 247
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
+ A+++F + NV S+N LL + G+++ LF M PD +Y IL+
Sbjct: 248 DEAIELFQGLPDKNVC----SYNILLKVLCGAGRVEDARQLFDEMAS--PPDVVTYGILI 301
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG LE+A K+ D+M+ R ++P + +++ LC + RV +AL + EDM+ + V
Sbjct: 302 HGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVH-HKV 360
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D V+ +++ G C G+L A + +EM R + D
Sbjct: 361 ILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDG 399
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
R KM + Q +H V P + + + + ++ A ++ EMS+ ++
Sbjct: 447 RGKMAEAFQ--VHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNA 504
Query: 123 KSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
++N+L+N + G +D+ M + + + PD +Y L+ S L+ A + E
Sbjct: 505 CTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQE 564
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
ML ++PT+VT+ L+ G C+ RV+ KL E M+ N+ P+A + SL+K C
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLE-KNIHPNATTYNSLMKQYC 620
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 96/194 (49%), Gaps = 14/194 (7%)
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
V+ ++H +V+ +E ++ V+S + L A + FDEM + ++ TL+
Sbjct: 352 VEDMVHH-----KVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLI 406
Query: 130 NAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
N + G++ + Q ++ + + D +Y +L+ G ++ +A++V + M++R +
Sbjct: 407 NGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVA 466
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P +VT+ L GLC + V A +L +M ++ +A + SLI GLC G L A+
Sbjct: 467 PNVVTYTALSDGLCKQGDVQAANELLHEMSN-KGLELNACTYNSLINGLCKAGYLDQAM- 524
Query: 249 FKEEMVRNKIEMDA 262
R +MDA
Sbjct: 525 ------RTMADMDA 532
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P ++ +V++ + AL V ++M V + T+L+ G +
Sbjct: 325 VEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSAR 384
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
F M+ K ++ D +Y L++G + L++A KV EML RRL VT+ L+ G
Sbjct: 385 RWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGY 444
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C ++ EA ++ M++ V P+ + +L GLC G++ A EM +E++
Sbjct: 445 CKRGKMAEAFQVHNTMVQ-RGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELN 503
Query: 262 A 262
A
Sbjct: 504 A 504
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 87/192 (45%), Gaps = 3/192 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K N Y+ +I L +A D+ + + + + P+ + +I ++ L+
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQAMRTMADMD-AAGLKPDVYTYTTLIDALCKSGELD 556
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + EM ++ T+ ++N L+N G+++ L + M EK + P+A +YN LM
Sbjct: 557 RAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLM 616
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ ++ +++ M R ++P T+ LI G C + EA +M+
Sbjct: 617 KQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIE-KGF 675
Query: 224 KPDAQVFASLIK 235
+ A +++LI+
Sbjct: 676 RLTASSYSALIR 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A LKP Y Y +I L ++ D +L ++ D + P + + +++ +
Sbjct: 531 DAAGLKPDVYT---YTTLIDALCKSGELDRAHDLLQEML-DNGIKPTIVTYNVLMNGFCM 586
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ +E ++ + M N+ ++N+L+ + T++++ M + V P+ +
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL+ G +R +++A +EM+++ + T ++ LI L + + EA KL DM
Sbjct: 647 YNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMR 706
Query: 219 R-VYNVKPDAQVF 230
+ + +PD F
Sbjct: 707 KEGFTAEPDVYNF 719
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y I+ A F + + +++ + V+P +++ +I+ Y + +
Sbjct: 518 LKP---NAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKV 573
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
A + M + K++ L+N + K+D ++F+ M K ++PD SY +L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
++G ++ A +FDEM++ L P ++ + L+ G C R E K KE D M V
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC---RSGEIEKAKELLDEMSV 690
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ P+A + ++I G C G+L+ A +EM
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 723
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A ++F EM + V S+ L+N G + + + +F +++E+ ++P+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G S +E A ++ DEM + L P VT+ T+I G C + EA +L D M++
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF-DEMKLK 726
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ PD+ V+ +L+ G C + ++ A+
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAI 752
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + D+ ++I +++ + P+ + +I+ + + ++ A +FDEM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ V +N LL G+I++ +L M K + P+A +Y ++ G S L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+A+++FDEM + L P + TL+ G C V+ A+ +
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 41/243 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++++ R+ ++ +++L ++ + P + +C +I Y ++ L A ++
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 110 FDEM-------SSF-------------NVQRTV--------------KSFNTLLNAMLTC 135
FDEM SF +V+R + FN L+N +
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779
Query: 136 GKIDRMTDLFQIM-----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK + T++ + +++ P+ +YNI++ LE A ++F +M L PT
Sbjct: 780 GKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++T+ +L+ G R E + ++ + ++PD +++ +I G + AL
Sbjct: 840 VITYTSLLNGYDKMGRRAEMFPVFDEAIAA-GIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 251 EEM 253
++M
Sbjct: 899 DQM 901
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I R K + ++L ++K +V + V+ + L+ A + EM
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + TL+ L + D M L ++ E+ ++PD YN L+ G ++R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A EM++ L+P T+G I G A K ++ MR V P+ +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE-MRECGVLPNKVLCTG 562
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C G++ A MV I DA
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDA 592
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P +Y YD++I L + K ++ + +L ++ V + + +I + R
Sbjct: 271 KGLVPLKYT---YDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGR 326
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
+ A + EM S + ++ + M G +++ LF M + P A +Y
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G + + +++ EM KR + + T+GT++ G+C +D A + ++M+
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI-A 445
Query: 221 YNVKPDAQVFASLIK 235
+P+ ++ +LIK
Sbjct: 446 SGCRPNVVIYTTLIK 460
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 41/251 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I + + I ++ + + P II+ ++ + R+ +E A ++
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEMS + ++ T+++ G + LF M+ K + PD+ Y L+ GC
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 169 SRRLEDAWKVF--------------------------------------DEMLKRRLQPT 190
+E A +F D R +P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ +I LC E ++ A +L M N+ P + SL+ G +G +
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 251 EEMVRNKIEMD 261
+E + IE D
Sbjct: 864 DEAIAAGIEPD 874
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A PF L+++ + K G+ ++ EV L D P ++ + +I + +
Sbjct: 763 ASSTAPFN-ALINW---VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LE A ++F +M + N+ TV ++ +LLN D+M
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGY------DKM------------------- 853
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
RR E + VFDE + ++P + + +I E +AL L + M
Sbjct: 854 --------GRRAE-MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 221 YNVKPDAQVFAS----LIKGLCAVGELSLALGFKEEMVR 255
V ++ S L+ G VGE+ +A E MVR
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVR 943
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q + P ++ Y+ +I L +AK DE + L ++ + + P + IS Y A
Sbjct: 481 QGIAP---DIFCYNSLIIGLSKAKRMDEARSFLVEMVENG-LKPNAFTYGAFISGYIEAS 536
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
A + EM V L+N GK+ ++ M ++ + DA +Y
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+LM+G + +++DA ++F EM R
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREM------------------------------------RG 620
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ PD + LI G +G + A +EMV
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L + + +++ HQ+++ ++P I + ++++ Y + V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI-----LM 163
FDE + ++ ++ ++NA L G + L Q+ K D C +I L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
G +E A KV + M++ + P T LI C+
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCI 962
>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 376
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + DE +L+ + + P ++ +I+ + + A++VF EM
Sbjct: 132 YSAMINGLCKEAKLDEAVSVLNGMIKNGGT-PNAHVYNTLINGFMGVSKFDDAIRVFREM 190
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
S N TV ++NTL+N + + DL +++EK P +Y++LM G ++
Sbjct: 191 GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKV 250
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A +++++++ L+P + LI+GLC + AL L DM R +N P+ +
Sbjct: 251 EMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNR-WNCAPNLVTHNT 309
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L++G G++ ALG ++RN ++ D
Sbjct: 310 LMEGFYKDGDIRNALGIWARILRNGLQPD 338
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+++ ++N + K+D + M K +P+A YN L++G + + +DA +VF EM
Sbjct: 131 AYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFMGVSKFDDAIRVFREM 190
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
PT+VT+ TLI GLC R EA L ++M+ KP ++ L+KGLC +
Sbjct: 191 GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLE-KGWKPCVITYSLLMKGLCQGHK 249
Query: 243 LSLALGFKEEMVRNKIEMD 261
+ +AL +++ N ++ D
Sbjct: 250 VEMALQLWNQVISNGLKPD 268
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 1/154 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ EM+ V +N +LN G+I +L+++M + S + S+NI+
Sbjct: 6 IDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVVSFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + ++ A +++ M + T+G L+ G C ++++L++ E
Sbjct: 66 MRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLEIAEEKGG 125
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V DA ++++I GLC +L A+ M++N
Sbjct: 126 V-LDAFAYSAMINGLCKEAKLDEAVSVLNGMIKN 158
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ +I L + + F E ++ ++ + P I + ++ + +E ALQ++
Sbjct: 199 VVTYNTLINGLCKGERFAEAYDLVKEM-LEKGWKPCVITYSLLMKGLCQGHKVEMALQLW 257
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+++ S ++ V+ N L++ + + GK L+ M ++ +P+ ++N LM G
Sbjct: 258 NQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKD 317
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ +A ++ +L+ LQP +V++ + GLC R+ A+ +D +
Sbjct: 318 GDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFLQDAL 366
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ-----LKHDTRVVPEEIIFCNVISFYGR 99
K ++ ++ Y L++ L + + Q+ +Q LK D +++ I + + G+
Sbjct: 228 KGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNGLKPDVQMLN---ILIHGLCSVGK 284
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
+L AL ++ +M+ +N + + NTL+ G I ++ +I+ + PD S
Sbjct: 285 TQL---ALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALGIWARILRNGLQPDIVS 341
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
YNI + G R+ A + L +++ P+++T
Sbjct: 342 YNITLKGLCSCSRISFAILFLQDALAKKIAPSIIT 376
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 13/249 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P +L LL L D L++F+ K + + Y + I KLG F
Sbjct: 78 TPVQLCKLLELPLDVPTLLEIFERVGGQ---------KGYCHTFDVYYVFINKLGAIGKF 128
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++L Q+K + +V E IF ++ YG+A A+++ +M + + + T KS++
Sbjct: 129 KLIDKLLMQMKEEG-IVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD 187
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L ++T T++F ++ K VSP ++ I+M + ++ A + +M K
Sbjct: 188 LVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P + + TLI+ L + +V EALKL E+M V PD Q F +I GLC V ++
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF-VMGCMPDVQTFNDVIHGLCKVNKIHD 306
Query: 246 ALGFKEEMV 254
A + M+
Sbjct: 307 ATKLVDRML 315
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +L Y+ +I L + DE ++ H + D V + + +I R +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG-AVANNVTYNTLIHALLRRGAFQ 547
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL + ++M ++N L+ A G I++ +L+ Q++ + D S NI++
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMI 607
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G ++++A++ + + R P +VT+ +++ GLC R+ EAL L D ++V V
Sbjct: 608 NGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF-DRLQVEGV 666
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+PDA + + I C G ++ A F + N
Sbjct: 667 RPDAFTYNTFISWQCKEGMVNDACLFFYRGIEN 699
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 7/197 (3%)
Query: 66 MFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
MF+EV L+ T+ VP I++ +I + + AL++ +EM V+
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +++ + KI T L +++ + PD +Y L+HG +L +A K+
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI---- 345
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + P TLI G + ++ EA + M + +PD + L+ GLC G
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405
Query: 243 LSLALGFKEEMVRNKIE 259
LS A EM R E
Sbjct: 406 LSFARDLVNEMSRRGCE 422
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ L +A + +E +LH++ + I C +I R + AL +
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC-LICALCRKEKVHVALNL 482
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMH--- 164
EM + + + ++N+L+ + +ID LF +++ V+ + +YN L+H
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV-TYNTLIHALL 541
Query: 165 ------------------GCVVSR--------------RLEDAWKVFDEMLKRRLQPTLV 192
GC + + +E +++++M+ L +
Sbjct: 542 RRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ +I GLC +VD A + D + V PD + S++ GLC VG + AL +
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFV-PDIVTYNSVLNGLCKVGRIKEALNLFDR 660
Query: 253 MVRNKIEMDA 262
+ + DA
Sbjct: 661 LQVEGVRPDA 670
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 76/290 (26%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ F + + Y ++ L R +E ++IL ++ P I +I+ Y + L
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLINGYVMSGQL 370
Query: 104 EHALQVFDE-MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
+ A +E M +F Q + ++N L++ + G + DL M + P+ +Y I
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRL---------------------------------- 187
L++G + LE+A V EM R L
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG 490
Query: 188 -QPTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNV--------------- 223
+P L T+ +LIYGLC R+DEA +L +M+ YN
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKAL 550
Query: 224 -----------KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + LIK C VG + L E+M+ + + D
Sbjct: 551 TLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 6/150 (4%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPE----EIIFCNV-ISFYGRARLLEHALQVFDE 112
IT G K F +V I L+ +++ + + I CN+ I+ + +++A + +
Sbjct: 566 ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRD 625
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
+ + ++N++LN + G+I +LF ++ + V PDA +YN +
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGM 685
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ DA F ++ P+ +T+ L+Y L
Sbjct: 686 VNDACLFFYRGIENGFVPSNLTWNVLVYTL 715
>gi|326490553|dbj|BAJ84940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 856
Score = 84.3 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 12/248 (4%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE 69
F+ +L+L D +AL F P F+++ Y +I LG+AK F
Sbjct: 331 FQANQVLKLLHDHNIALGFFHWLKRQPG---------FKHDGHTYTTMIGILGQAKQFGT 381
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++++L ++ P + + +I YGRA L A++VF+EM Q ++ TL+
Sbjct: 382 MRKLLDEMS-SVNCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEGAGYQPDRVTYCTLI 440
Query: 130 NAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
+ G ++ DL+ M++ +SPD +Y+ +++ +L A+K+F EM+
Sbjct: 441 DIHAKSGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIDNGCT 500
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
P LVT+ +I D +KL D M++ +PD ++ +++ L G L A
Sbjct: 501 PNLVTYNIIIALQAKARNYDNVVKLYRD-MQIAGFRPDKITYSIVMEVLGHCGHLDEAEA 559
Query: 249 FKEEMVRN 256
EM R+
Sbjct: 560 VFLEMRRD 567
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 80/181 (44%), Gaps = 2/181 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ LG+ ++ ++ D P + + +I+ +AR ++ ++++ +M
Sbjct: 471 YSAMVNCLGKGGQLAAAYKLFCEMI-DNGCTPNLVTYNIIIALQAKARNYDNVVKLYRDM 529
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ +++ ++ + CG +D +F M + +PD Y +L+ + ++
Sbjct: 530 QIAGFRPDKITYSIVMEVLGHCGHLDEAEAVFLEMRRDWAPDEPVYGLLVDLWGKAGNVD 589
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
A + ML+ LQP + T +L+ R +A + ++M+ + P Q + L
Sbjct: 590 KALGWYHAMLQDGLQPNVPTCNSLLSAFLKLNRFQDAYGVLQNML-AQGLVPSLQTYTLL 648
Query: 234 I 234
+
Sbjct: 649 L 649
>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 373
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + DE +L+ + + P ++ +I+ + + A++VF EM
Sbjct: 132 YSAMINGLCKEAKLDEAVSVLNGMIKNGGT-PNAHVYNTLINGFVGVSKFDDAIRVFREM 190
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
S N TV ++NTL+N + + DL +++EK P +Y++LM G ++
Sbjct: 191 GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKV 250
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A +++++++ L+P + LI+GLC + AL L DM R +N P+ +
Sbjct: 251 EMALQLWNQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNR-WNCAPNLVTHNT 309
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L++G G++ ALG ++RN ++ D
Sbjct: 310 LMEGFYKDGDIRNALGIWARILRNGLQPD 338
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 2/139 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+++ ++N + K+D + M K +P+A YN L++G V + +DA +VF EM
Sbjct: 131 AYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAHVYNTLINGFVGVSKFDDAIRVFREM 190
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
PT+VT+ TLI GLC R EA L ++M+ KP ++ L+KGLC +
Sbjct: 191 GSTNCSPTVVTYNTLINGLCKGERFAEAYDLVKEMLE-KGWKPCVITYSLLMKGLCQGHK 249
Query: 243 LSLALGFKEEMVRNKIEMD 261
+ +AL +++ N ++ D
Sbjct: 250 VEMALQLWNQVISNGLKPD 268
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ EM+ V +N +LN G+I +L+++M + S + S+NI+
Sbjct: 6 IDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREDSQNVVSFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK---LKEDMMR 219
M G + ++ A +++ M + T+G L+ G C ++++L+ + E+
Sbjct: 66 MRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNGYINKSLRVLGIAEEKGG 125
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V DA ++++I GLC +L A+ M++N
Sbjct: 126 VL----DAFAYSAMINGLCKEAKLDEAVSVLNGMIKN 158
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ +I L + + F E ++ ++ + P I + ++ + +E ALQ++
Sbjct: 199 VVTYNTLINGLCKGERFAEAYDLVKEM-LEKGWKPCVITYSLLMKGLCQGHKVEMALQLW 257
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
+++ S ++ V+ N L++ + + GK L+ M ++ +P+ ++N LM G
Sbjct: 258 NQVISNGLKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWNCAPNLVTHNTLMEGFYKD 317
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ +A ++ +L+ LQP +V++ + GLC R+ A+ +D +
Sbjct: 318 GDIRNALGIWARILRNGLQPDIVSYNITLKGLCSCSRISFAILFLQDAL 366
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I R D+ Q++L L ++R P+ F ++I +A E+A
Sbjct: 508 NIVTYNTLIGGFCRNGNMDKAQELLEMLL-ESRFRPDIFTFNSLIDGLCQAHKHENAFGC 566
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM ++V V ++N L+ + G + R T L + M+ + + PD S+N L+ G
Sbjct: 567 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG 626
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKED 216
R + A K+FD ML+ +QP T+G LI LC R D+A L +KE+
Sbjct: 627 KNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKEN 678
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + K D ++ L H+ + P + + +I + R ++ A ++
Sbjct: 473 NIYSYNMVIDCLCKGKSMDRASEMFRDL-HNRGISPNIVTYNTLIGGFCRNGNMDKAQEL 531
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ + + + +FN+L++ + K + F +++E V P+ +YNIL+
Sbjct: 532 LEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCA 591
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + + +M +QP +F LI G + R +A KL + M+R+ ++PD
Sbjct: 592 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRL-GIQPDNY 650
Query: 229 VFASLIKGLCAVG 241
+ +LIK LC G
Sbjct: 651 TYGALIKSLCKSG 663
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKY 151
VI + + ++ A ++F ++ + + + ++NTL+ G +D+ +L + ++E
Sbjct: 480 VIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESR 539
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
PD ++N L+ G + + E+A+ F EM++ + P ++T+ LI C V +
Sbjct: 540 FRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRST 599
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L M +++ ++PD F +LI+G A + M+R I+ D
Sbjct: 600 HLLRQM-KLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPD 648
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 3/166 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+L Q+K V EE++ C + +GR L + ++VF ++ + T + +N +++A+
Sbjct: 181 LLQQIKESGLKVTEELL-CILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDAL 239
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+ +D FQ M + PD +YNIL+HG +++A ++ +M P +
Sbjct: 240 IKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNV 299
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
T+ LI G R EA K+ + M+ NV P+ SL+ G+
Sbjct: 300 FTYTILIDGFFNAKRAGEAFKVLQ-TMKERNVVPNEATMRSLVHGV 344
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 93/183 (50%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P + +I +A +E + D + + + + S+N +++ + +DR
Sbjct: 433 SGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDR 492
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++F+ + + +SP+ +YN L+ G + ++ A ++ + +L+ R +P + TF +LI
Sbjct: 493 ASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLID 552
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLC + + A +M+ ++V P+ + LI CA+G++S + +M + I+
Sbjct: 553 GLCQAHKHENAFGCFTEMVE-WDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQ 611
Query: 260 MDA 262
D
Sbjct: 612 PDT 614
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHG 165
VFD V+ ++ TL+ A+ GK++ R D +++ + + SYN+++
Sbjct: 426 VFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMD--RLINDGLISNIYSYNMVIDC 483
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ ++ A ++F ++ R + P +VT+ TLI G C +D+A +L E M+ +P
Sbjct: 484 LCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE-MLLESRFRP 542
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
D F SLI GLC + A G EMV
Sbjct: 543 DIFTFNSLIDGLCQAHKHENAFGCFTEMV 571
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y I+ A F + + +++ + V+P +++ +I+ Y + +
Sbjct: 518 LKP---NAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKV 573
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
A + M + K++ L+N + K+D ++F+ M K ++PD SY +L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
++G ++ A +FDEM++ L P ++ + L+ G C R E K KE D M V
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC---RSGEIEKAKELLDEMSV 690
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ P+A + ++I G C G+L+ A +EM
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 723
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A ++F EM + V S+ L+N G + + + +F +++E+ ++P+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G S +E A ++ DEM + L P VT+ T+I G C + EA +L D M++
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF-DEMKLK 726
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ PD+ V+ +L+ G C + ++ A+
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAI 752
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + D+ ++I +++ + P+ + +I+ + + ++ A +FDEM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ V +N LL G+I++ +L M K + P+A +Y ++ G S L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+A+++FDEM + L P + TL+ G C V+ A+ +
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 41/243 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++++ R+ ++ +++L ++ + P + +C +I Y ++ L A ++
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 110 FDEM-------SSF-------------NVQRTV--------------KSFNTLLNAMLTC 135
FDEM SF +V+R + FN L+N +
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779
Query: 136 GKIDRMTDLFQIM-----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK + T++ + +++ P+ +YNI++ LE A ++F +M L PT
Sbjct: 780 GKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++T+ +L+ G R E + ++ + ++PD +++ +I G + AL
Sbjct: 840 VITYTSLLNGYDKMGRRAEMFPVFDEAIAA-GIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 251 EEM 253
++M
Sbjct: 899 DQM 901
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I R K + ++L ++K +V + V+ + L+ A + EM
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + TL+ L + D M L ++ E+ ++PD YN L+ G ++R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A EM++ L+P T+G I G A K ++ MR V P+ +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE-MRECGVLPNKVLCTG 562
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C G++ A MV I DA
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDA 592
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P +Y YD++I L + K ++ + +L ++ V + + +I + R
Sbjct: 271 KGLVPLKYT---YDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGR 326
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
+ A + EM S + ++ + M G +++ LF M + P A +Y
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G + + +++ EM KR + + T+GT++ G+C +D A + ++M+
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI-A 445
Query: 221 YNVKPDAQVFASLIK 235
+P+ ++ +LIK
Sbjct: 446 SGCRPNVVIYTTLIK 460
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 41/251 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I + + I ++ + + P II+ ++ + R+ +E A ++
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEMS + ++ T+++ G + LF M+ K + PD+ Y L+ GC
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 169 SRRLEDAWKVF--------------------------------------DEMLKRRLQPT 190
+E A +F D R +P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ +I LC E ++ A +L M N+ P + SL+ G +G +
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 251 EEMVRNKIEMD 261
+E + IE D
Sbjct: 864 DEAIAAGIEPD 874
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A PF L+++ + K G+ ++ EV L D P ++ + +I + +
Sbjct: 763 ASSTAPFN-ALINW---VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LE A ++F +M + N+ TV ++ +LLN D+M
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGY------DKM------------------- 853
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
RR E + VFDE + ++P + + +I E +AL L + M
Sbjct: 854 --------GRRAE-MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 221 YNVKPDAQVFAS----LIKGLCAVGELSLALGFKEEMVR 255
V ++ S L+ G VGE+ +A E MVR
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVR 943
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q + P ++ Y+ +I L +AK DE + L ++ + + P + IS Y A
Sbjct: 481 QGIAP---DIFCYNSLIIGLSKAKRMDEARSFLVEMVENG-LKPNAFTYGAFISGYIEAS 536
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
A + EM V L+N GK+ ++ M ++ + DA +Y
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+LM+G + +++DA ++F EM R
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREM------------------------------------RG 620
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ PD + LI G +G + A +EMV
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L + + +++ HQ+++ ++P I + ++++ Y + V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI-----LM 163
FDE + ++ ++ ++NA L G + L Q+ K D C +I L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
G +E A KV + M++ + P T LI C+
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCI 962
>gi|357460285|ref|XP_003600424.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489472|gb|AES70675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 393
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 6/184 (3%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P + + +++ Y + + A Q+F+ +S + V+S+ ++N + +D
Sbjct: 153 RVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGLCKNKMVDEA 212
Query: 142 TDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
+LF+ M K + PD +YN L+ G SRR+ D W EM R ++T+ +L+ G
Sbjct: 213 ANLFKEMHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDG 272
Query: 201 LCLELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
LC +VD+A+ L + ++ N ++P+ + L+ GLC G L A ++++
Sbjct: 273 LCKNHQVDKAITL---LTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGY 329
Query: 259 EMDA 262
++DA
Sbjct: 330 QLDA 333
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 118/232 (50%), Gaps = 20/232 (8%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-- 94
N+ E +KP +++ Y+ II L + K+ + + ++ D ++ P+ + + +I
Sbjct: 28 NHIERLLVKP---DVVMYNTIIDILCKDKLVSDGCDLYSEMI-DKKIYPDVVTYNTLIYS 83
Query: 95 --SF--------YGRARL--LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+F YG + L ++ A+ + ++M+S V +++F TL++ + G++ +
Sbjct: 84 LLNFVYIKIRKEYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKAR 143
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++ IM ++ V P+ +YN LM G + + + A ++F+ + R + P + ++ +I GL
Sbjct: 144 NVLAIMIKQRVEPNIVTYNSLMDGYFLVKEVNKAKQLFNTISLRGMTPNVRSYKVMINGL 203
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C VDEA L ++ M N+ PD + SLI GLC + F EM
Sbjct: 204 CKNKMVDEAANLFKE-MHSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEM 254
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
Query: 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77
L K+ A QLF N + + P N+ Y ++I L + KM DE + ++
Sbjct: 170 LVKEVNKAKQLF-------NTISLRGMTP---NVRSYKVMINGLCKNKMVDEAANLFKEM 219
Query: 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
H +VP+ + + ++I ++R + EM + ++N+LL+ + +
Sbjct: 220 -HSKNMVPDTVAYNSLIDGLCKSRRIYDVWDFIGEMHDRGQPANIITYNSLLDGLCKNHQ 278
Query: 138 IDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+D+ +T L +I + + P+ +Y IL+ G + RL DA +V+ ++L + Q +
Sbjct: 279 VDKAITLLTKIKNQGIRPNIYTYTILVDGLCKNGRLRDAQEVYQDLLNKGYQLDARIYTV 338
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+I GLC E +DEAL L M PD + I+ L
Sbjct: 339 MINGLCKEGFLDEALSLLSK-MEDNKCTPDGVTYEITIRAL 378
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC----LELRV 207
V PD YN ++ + + D ++ EM+ +++ P +VT+ TLIY L +++R
Sbjct: 35 VKPDVVMYNTIIDILCKDKLVSDGCDLYSEMIDKKIYPDVVTYNTLIYSLLNFVYIKIRK 94
Query: 208 DEAL----KLKE-----DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++KE + M V P+ + F +L+ GLC GE+ A M++ ++
Sbjct: 95 EYGFSILGQMKEAVGLLNQMTSKTVTPNIRTFTTLVDGLCKDGEVKKARNVLAIMIKQRV 154
Query: 259 E 259
E
Sbjct: 155 E 155
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 100/202 (49%), Gaps = 4/202 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R + Y ++ L R K F + +L +++ +T + P+ I+ +I+ + + ++ A+
Sbjct: 89 RPTTVTYTALVAALTRQKRFKAISGLLSEME-ETGIKPDSILLNAIINAFSESGNVKEAM 147
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHG 165
++F +M + T +FNTL+ K + L ++M + + P+ +YNIL+
Sbjct: 148 EIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGA 207
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +++AW V +ML +QP +VT+ TL + ++A + DM+ V P
Sbjct: 208 LCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLN-KKVNP 266
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ + ++ G C G L+ AL
Sbjct: 267 NERTCGIIVGGYCEQGNLAEAL 288
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Query: 80 DTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
+ +V P E ++ Y L AL+V M + + FN+L+ L G D
Sbjct: 261 NKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSD 320
Query: 140 RMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ +ME+ V PD +++ +M+G + R++ ++FD+MLK ++P + F L
Sbjct: 321 GVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILA 380
Query: 199 YGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G +R E +K + + M Y V+P+ +F ++I G C G++ A E M
Sbjct: 381 KGF---VRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHM 434
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 9/196 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ ++ +I D V + L ++ ++ V P+ I F +++ + A ++ ++
Sbjct: 302 NLVIFNSLIKGFLDIGDSDGVDKALTMME-ESGVKPDVITFSTIMNGWSSAGRMDKCQEI 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FD+M ++ + F+ L + G+ + L M KY V P+ + ++ G
Sbjct: 361 FDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCT 420
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDMMRVYNVKP 225
+ ++E AWKVF+ M + P L TF TLI+G R +E L++ E+M NV P
Sbjct: 421 AGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEM----NVVP 476
Query: 226 DAQVFASLIKGLCAVG 241
+ + + ++G
Sbjct: 477 ENSTLKLVSEAWRSIG 492
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 1/154 (0%)
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+F+ + + T ++ L+ A+ + ++ L ME+ + PD+ N +++
Sbjct: 79 IFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFS 138
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +++A ++F +M + +PT TF TLI G + + +E++KL E M R N+KP+
Sbjct: 139 ESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNN 198
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + L+ LC + A +M+ + ++ D
Sbjct: 199 RTYNILVGALCKKKSIKEAWNVVHQMLASGVQPD 232
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +++ R + + + EM ++ N ++NA G + ++
Sbjct: 90 PTTVTYTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEI 149
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK-RRLQPTLVTFGTLIYGLC 202
FQ ME+ P ++N L+ G + R+ E++ K+ + M + L+P T+ L+ LC
Sbjct: 150 FQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALC 209
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + EA + M+ V+PD + +L + GE + A +M+ K+
Sbjct: 210 KKKSIKEAWNVVHQML-ASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKV 264
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + E ++ +++ + ++P+ + F ++ + ++ A VFD M
Sbjct: 292 YNNLIYGYSSTGQWKEAVRVFKEMRRQS-ILPDVVTFNMLMGSLCKYGKIKEARDVFDTM 350
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V S+N +LN T G + MTDLF +M ++P C++N+L+ L
Sbjct: 351 AMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGML 410
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A +F+EM ++P ++T+ T+I LC ++D+A++ K + M V PD +
Sbjct: 411 DKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAME-KFNQMIDQGVAPDKYAYHC 469
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI+G C G L A E++ N + +D
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLD 498
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 8/227 (3%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF-CNVIS 95
N +KP N+L Y +I L R D+ + +Q+ D V P++ + C +
Sbjct: 418 NEMRDHGVKP---NVLTYTTVIAALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQG 473
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSP 154
F LL+ A ++ E+ + + + F++++N + G++ ++F + + + P
Sbjct: 474 FCTHGSLLK-AKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
A Y++LM G + ++E A +VFD M+ ++P V +GTL+ G C R+DE L L
Sbjct: 533 TAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLF 592
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+M++ +KP ++ +I GL G A EM + I M+
Sbjct: 593 REMLQ-KGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMN 638
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 92/196 (46%), Gaps = 3/196 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
++ Y +++ L + +L + V P+ + + VI + + + A
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACD 240
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCV 167
+F EM + +++++++A+ +D+ L Q++ K V P+ +YN L++G
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + ++A +VF EM ++ + P +VTF L+ LC ++ EA + D M + PD
Sbjct: 301 STGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVF-DTMAMKGQNPDV 359
Query: 228 QVFASLIKGLCAVGEL 243
+ ++ G G L
Sbjct: 360 FSYNIMLNGYATKGCL 375
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 48/214 (22%)
Query: 50 NLLHYDLII--------TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
N +H D+++ KLGR + Q I L + + P +++ ++ Y
Sbjct: 493 NGMHLDIVLFSSIINNLCKLGRVM---DAQNIF-DLTVNVGLHPTAVVYSMLMDGYCLVG 548
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSP------ 154
+E AL+VFD M S ++ + TL+N G+ID LF ++++K + P
Sbjct: 549 KMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYN 608
Query: 155 -----------------------------DACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+ C+Y+I++ G +R ++A +F E+
Sbjct: 609 IIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAM 668
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
++ ++T T+I G+ RV+EA L + R
Sbjct: 669 NVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 702
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ +SP + +Y ILM C + R E A F ++L+ L+ ++ L+ G C R DE
Sbjct: 105 RVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDE 164
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
AL + PD ++ L+K LC G+
Sbjct: 165 ALDILLHRTPELGCVPDVFSYSILLKSLCDQGK 197
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 84/192 (43%), Gaps = 43/192 (22%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTD 143
P ++++ +++ Y + ++ L +F EM ++ + +N +++ + G+ +
Sbjct: 567 PNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 626
Query: 144 LFQIMEKYVSPDACSYNILMHG-----CV------------------------------V 168
++ E ++ + C+Y+I++ G C
Sbjct: 627 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 686
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM---MRVYNVKP 225
+RR+E+A +F + + L P +VT+ +I L E V+EA EDM M+ +P
Sbjct: 687 TRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEA----EDMFSSMQNAGCEP 742
Query: 226 DAQVFASLIKGL 237
D+++ +++ L
Sbjct: 743 DSRLLNHVVREL 754
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD--LFQIMEKYVSPDA 156
RA E AL F ++ ++ + N LL + D D L + E PD
Sbjct: 123 RAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDV 182
Query: 157 CSYNILMHGCV---VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
SY+IL+ S + +D ++ E P +V + T+I G E V++A L
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEG-GAVCSPDVVAYNTVIDGFFKEGDVNKACDL 241
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++M++ + PD ++S++ LC + A F +MV +
Sbjct: 242 FKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 120/249 (48%), Gaps = 13/249 (5%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P +L LL L D L++F+ K + + Y + I KLG F
Sbjct: 78 TPVQLCKLLELPLDVPTLLEIFERVGGQ---------KGYCHTFDVYYVFINKLGAIGKF 128
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ ++L Q+K + +V E IF ++ YG+A A+++ +M + + + T KS++
Sbjct: 129 KLIDKLLMQMKEEG-IVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYD 187
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+L ++T T++F ++ K VSP ++ I+M + ++ A + +M K
Sbjct: 188 LVLEILVTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKH 247
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P + + TLI+ L + +V EALKL E+M V PD Q F +I GLC V ++
Sbjct: 248 GCVPNSIVYQTLIHALSQKNQVSEALKLLEEMF-VMGCMPDVQTFNDVIHGLCKVNKIHD 306
Query: 246 ALGFKEEMV 254
A + M+
Sbjct: 307 ATKLVDRML 315
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +L Y+ +I L + DE ++ H + D V + + +I R +
Sbjct: 489 KGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDG-AVANNVTYNTLIHALLRRGAFQ 547
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL + ++M ++N L+ A G I++ +L+ Q++ + D S NI++
Sbjct: 548 KALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMI 607
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+G ++++A++ + + R P +VT+ +++ GLC R+ EAL L D ++V V
Sbjct: 608 NGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLF-DRLQVEGV 666
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+PDA + + I C G ++ A F + N
Sbjct: 667 RPDAFTYNTFISWQCKEGMVNDACSFFYRGIEN 699
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 7/197 (3%)
Query: 66 MFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
MF+EV L+ T+ VP I++ +I + + AL++ +EM V+
Sbjct: 230 MFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQ 289
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +++ + KI T L +++ + PD +Y L+HG +L +A K+
Sbjct: 290 TFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKI---- 345
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L + P TLI G + ++ EA + M + +PD + L+ GLC G
Sbjct: 346 LIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGS 405
Query: 243 LSLALGFKEEMVRNKIE 259
LS A EM R E
Sbjct: 406 LSFARDLVNEMSRRGCE 422
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +++ L +A + +E +LH++ + I C +I R + AL +
Sbjct: 424 NVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNC-LICALCRKEKVHVALNL 482
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMH--- 164
EM + + + ++N+L+ + +ID LF +++ V+ + +YN L+H
Sbjct: 483 LSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV-TYNTLIHALL 541
Query: 165 ------------------GCVVSR--------------RLEDAWKVFDEMLKRRLQPTLV 192
GC + + +E +++++M+ L +
Sbjct: 542 RRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTI 601
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
+ +I GLC +VD A + D + V PD + S++ GLC VG + AL +
Sbjct: 602 SCNIMINGLCKVGKVDNAFEFLRDAINRGFV-PDIVTYNSVLNGLCKVGRIKEALNLFDR 660
Query: 253 MVRNKIEMDA 262
+ + DA
Sbjct: 661 LQVEGVRPDA 670
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 108/290 (37%), Gaps = 76/290 (26%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L+ F + + Y ++ L R +E ++IL ++ P I +I+ Y + L
Sbjct: 316 LRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIP-----CPNNAILNTLINGYVMSGQL 370
Query: 104 EHALQVFDE-MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
+ A +E M +F Q + ++N L++ + G + DL M + P+ +Y I
Sbjct: 371 KEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAI 430
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRL---------------------------------- 187
L++G + LE+A V EM R L
Sbjct: 431 LVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG 490
Query: 188 -QPTLVTFGTLIYGLCLELRVDEALKLKEDMM--------RVYNV--------------- 223
+P L T+ +LIYGLC R+DEA +L +M+ YN
Sbjct: 491 CKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKAL 550
Query: 224 -----------KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + LIK C VG + L E+M+ + + D
Sbjct: 551 TLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADT 600
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 71 QQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
Q I+ L DT I CN+ I+ + +++A + + + + ++N++L
Sbjct: 590 QMIMDGLGADT-------ISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVL 642
Query: 130 NAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
N + G+I +LF ++ + V PDA +YN + + DA F ++
Sbjct: 643 NGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFV 702
Query: 189 PTLVTFGTLIYGL 201
P+ +T+ L+Y L
Sbjct: 703 PSNLTWNVLVYTL 715
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ VP + + +I ++ ++ A +V D M V V +++ L++ ++D
Sbjct: 143 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDE 202
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L Q++ + ++P +YNIL++ + +LEDA+K+F M +RR PT+VT+ TL+
Sbjct: 203 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLR 262
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC ++D A +L +M+ PDA + +L GL G++ A E+M
Sbjct: 263 ALCHHKQLDGAHRLYAEMI-AKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
+ L Y I+ +L + K D+ + ++ TR + P+ I+ V+S + +E A
Sbjct: 8 DALTYGPIVERLCKTKRIDDALATVEEMA--TRGIKPDAFIYNFVLSGLCQEEKVEEARL 65
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+F++M + V ++NTL+N + +I+ +LF+ M K P SYN L+ G
Sbjct: 66 LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ L A VFD+M++ P +VT+ TLI GL +V A ++ + M++ V P+
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK-KGVTPNV 184
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ LI G C V + A E+MV I
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 215
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 92/175 (52%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + ++ + + ++ AL +EM++ ++ +N +L+ + K++ L
Sbjct: 7 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K ++P+ +YN L++G + R+E A+++F EM + PT V++ TLI G C
Sbjct: 67 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + A + + M+R N P+ + +LI GL G++ A + MV+ +
Sbjct: 127 KKDLVAAKDVFDKMVRS-NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 180
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L ++ ++L + V P + +I + + R ++ A ++
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VTPNVATYSCLIDGFCKVRRVDEAHKL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M + + TV ++N LLN++ K++ LF+ M ++ P +YN L+
Sbjct: 207 LEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCH 266
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++L+ A +++ EM+ + P +T+ TL +GL +V EA +L E M
Sbjct: 267 HKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
M +Y PDA +Y ++ ++R++DA +EM R ++P + ++ GLC E +V
Sbjct: 1 MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+EA L E M++ + P+ + +LI GLC + A +EM
Sbjct: 61 EEARLLFEKMVK-QRINPNVVTYNTLINGLCKAWRIETAYELFKEMA 106
>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g16890, mitochondrial-like
[Cucumis sativus]
Length = 688
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I R D+ Q++L L ++R P+ F ++I +A E+A
Sbjct: 499 NIVTYNTLIGGFCRNGNMDKAQELLEMLL-ESRFRPDIFTFNSLIDGLCQAHKHENAFGC 557
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EM ++V V ++N L+ + G + R T L + M+ + + PD S+N L+ G
Sbjct: 558 FTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG 617
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKED 216
R + A K+FD ML+ +QP T+G LI LC R D+A L +KE+
Sbjct: 618 KNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKEN 669
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+++I L + K D ++ L H+ + P + + +I + R ++ A ++
Sbjct: 464 NIYSYNMVIDCLCKGKSMDRASEMFRDL-HNRGISPNIVTYNTLIGGFCRNGNMDKAQEL 522
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ + + + +FN+L++ + K + F +++E V P+ +YNIL+
Sbjct: 523 LEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCA 582
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + + +M +QP +F LI G + R +A KL + M+R+ ++PD
Sbjct: 583 IGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRL-GIQPDNY 641
Query: 229 VFASLIKGLCAVG 241
+ +LIK LC G
Sbjct: 642 TYGALIKSLCKSG 654
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKY 151
VI + + ++ A ++F ++ + + + ++NTL+ G +D+ +L + ++E
Sbjct: 471 VIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESR 530
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
PD ++N L+ G + + E+A+ F EM++ + P ++T+ LI C V +
Sbjct: 531 FRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRST 590
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L M +++ ++PD F +LI+G A + M+R I+ D
Sbjct: 591 HLLRQM-KLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPD 639
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 93/183 (50%), Gaps = 2/183 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P + +I +A +E + D + + + + S+N +++ + +DR
Sbjct: 424 SGVKPGFSTYLTLIEALYKAGKMEIGNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDR 483
Query: 141 MTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++F+ + + +SP+ +YN L+ G + ++ A ++ + +L+ R +P + TF +LI
Sbjct: 484 ASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLID 543
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GLC + + A +M+ ++V P+ + LI CA+G++S + +M + I+
Sbjct: 544 GLCQAHKHENAFGCFTEMVE-WDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQ 602
Query: 260 MDA 262
D
Sbjct: 603 PDT 605
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
+L Q+K V EE++ C + +GR L + ++VF ++ + T + +N +++A+
Sbjct: 181 LLQQIKESGLKVTEELL-CILFGSWGRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDAL 239
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
+ +D FQ M + PD +YNIL+HG +++A ++ +M P +
Sbjct: 240 IKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNV 299
Query: 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
T+ LI G R E K+ + M+ NV P+ SL+ G+
Sbjct: 300 FTYTILIDGFFNAKRAGETFKVLQ-TMKERNVVPNEATMRSLVHGV 344
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSY 159
L+ VFD V+ ++ TL+ A+ GK++ R D +++ + + SY
Sbjct: 411 LKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRYMD--RLINDGLISNIYSY 468
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
N+++ + ++ A ++F ++ R + P +VT+ TLI G C +D+A +L E M+
Sbjct: 469 NMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLE-MLL 527
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+PD F SLI GLC + A G EMV
Sbjct: 528 ESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMV 562
>gi|297829500|ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata subsp. lyrata]
Length = 772
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + V+S + +A L++ A QV EM+ V ++N LL +IDR DL
Sbjct: 444 PDEVTYTTVVSAFVKAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDL 503
Query: 145 FQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
+ M + + PD SYNI++ GC++ A F+EM R + PT +++ TL+
Sbjct: 504 LREMAEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFA 563
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ + A ++ ++MM VK D + L++G C +G
Sbjct: 564 MSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLG 602
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 2/177 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ + D + +L ++ D + P+ + + +I AL
Sbjct: 480 NRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDVVSYNIIIDGCILIDDSAGALAF 539
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+EM + + T S+ TL+ A G+ +F M + V D ++N+L+ G
Sbjct: 540 FNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYC 599
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+EDA +V M + P + T+G+L G+ L + EAL L +++ VK
Sbjct: 600 RLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSLARKPGEALLLWKEIKERCEVK 656
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
PD ++N +++ C E WK+FDEM + +P ++T+ +I LC RVD
Sbjct: 227 PDTAAFNAVLNACANLGDTEKYWKLFDEMSEWDCEPDVLTYNVMI-KLC--ARVD 278
>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Brachypodium distachyon]
Length = 560
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 99/194 (51%), Gaps = 3/194 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
++++ L R K +++L +L+ D +P + + +VIS Y ++ +E A+ V+++M
Sbjct: 267 NILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMI 326
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLE 173
++N L+N G + ++Q M + PD +++ L+ G +L+
Sbjct: 327 GCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLD 386
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFAS 232
DA + + EM + ++QP TF +I C + R EAL+ LKE MR ++ P A +
Sbjct: 387 DAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRT-DIAPRAFICNP 445
Query: 233 LIKGLCAVGELSLA 246
+I LC G++ A
Sbjct: 446 VIDVLCKGGKVDEA 459
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 8/206 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L ++ + ++ Q+ + P + A L+ A + +
Sbjct: 124 YRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKA 183
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
F ++N L+N+ + CG++ LF+ I SPD S+N+ + G
Sbjct: 184 PQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGD 243
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN---VKPDAQ 228
++ A ++ + M + P VT L+ GLC RV E + +E + R+ P+
Sbjct: 244 VQKALELVERMAEFGCSPDTVTNNILVGGLC---RVKEVSRGREVLRRLQRDGVCMPNVV 300
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ S+I G C G + A+ +M+
Sbjct: 301 TYTSVISGYCKSGRMEDAMAVYNDMI 326
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYN 160
++ AL++ + M+ F + N L+ + ++ R ++ + +++ P+ +Y
Sbjct: 244 VQKALELVERMAEFGCSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYT 303
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ G S R+EDA V+++M+ P VT+ LI G + A+ + + M+ +
Sbjct: 304 SVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMI-L 362
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD F++LI G C G+L A+ EM + +I+ +A
Sbjct: 363 RRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNA 404
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 89/197 (45%), Gaps = 10/197 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I G+A + Q+ R P+ + F +I Y R L+ A++
Sbjct: 333 NAVTYNVLINGYGKAGNMGSAVAVYQQMIL-RRCPPDVVTFSTLIDGYCRCGQLDDAMRT 391
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VSPDACSYNILMH 164
+ EMS + +Q +F+ ++ L+ K +R + + +++ ++P A N ++
Sbjct: 392 WTEMSQYQIQPNAHTFSIII---LSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVID 448
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
++++A + EM + +P T+ LI G C++ R+ EA+ M+
Sbjct: 449 VLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDT-GCS 507
Query: 225 PDAQVFASLIKGLCAVG 241
PD+ S I L G
Sbjct: 508 PDSITVNSFIGCLLKAG 524
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 107/205 (52%), Gaps = 3/205 (1%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
+++ L + + +Q+ L H T +VP +I+ +I+ Y + R L A +F++M S
Sbjct: 339 ILLNGLCKDGKVAKAKQVFEMLVH-TGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS 397
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
+++ ++N L+N + + + DL MEK V P ++N L+ + +LE
Sbjct: 398 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEK 457
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+ V +M ++ ++ +++FG+++ C ++ EA+ + +DM+ +V P+AQV+ S+I
Sbjct: 458 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI-YKDVAPNAQVYNSII 516
Query: 235 KGLCAVGELSLALGFKEEMVRNKIE 259
G+ AL E+M + +
Sbjct: 517 DAYIESGDTEQALLLVEKMKNSGVS 541
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++++ L R DE + ++ ++ + ++P+ + + R + L +
Sbjct: 263 NVVTYNVLLSGLCRTGRMDETRALMDEMASHS-MLPDGFTYSILFDGLTRTGESQTMLSL 321
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F E V + + LLN + GK+ + +F+++ + P YN L++G
Sbjct: 322 FAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQ 381
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R L A+ +F++M R ++P +T+ LI GLC V +A L +M + V P +
Sbjct: 382 VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEK-SGVDPSVE 440
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
F +LI G+L +M + I+ D
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSD 473
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 8/222 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A P F YN+ +I L R+ + ++ ++ D V P I + +I + +
Sbjct: 189 APPPDAFSYNV-----VIAGLWRSGKGSDALKVFDEMV-DMGVAPNRITYNTMIDGHVKG 242
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159
LE ++ D+M + V ++N LL+ + G++D L M + + PD +Y
Sbjct: 243 GDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTY 302
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+IL G + + +F E LK+ + T L+ GLC + +V +A ++ E M+
Sbjct: 303 SILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFE-MLV 361
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ P ++ +LI G C V +L A E+M I D
Sbjct: 362 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPD 403
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 105/207 (50%), Gaps = 3/207 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I G A ++ +L ++ + + I F +V+ + + + A+ + D+M
Sbjct: 442 FNTLIDAYGTAGQLEKCFTVLSDMQQKG-IKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+V + +N++++A + G ++ L + M+ VS +YN+L+ G S ++
Sbjct: 501 IYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A ++ + + L+P +V++ T+I C + D+AL+L ++M + Y ++P + +
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK-YGIRPTLRTCHT 619
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIE 259
L+ L + G + ++M+ +E
Sbjct: 620 LVSALASAGRVHDMECLYQQMLHKNVE 646
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM---EKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
++N ++ A + G +D + + M E PDA SYN+++ G S + DA KVFD
Sbjct: 159 AWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFD 218
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM+ + P +T+ T+I G ++ +L++ M+ KP+ + L+ GLC
Sbjct: 219 EMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLH-DGPKPNVVTYNVLLSGLCRT 277
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
G + +EM + + D
Sbjct: 278 GRMDETRALMDEMASHSMLPDG 299
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S+N ++ + GK +F ++++ V+P+ +YN ++ G V LE +++ D+M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQM 255
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L +P +VT+ L+ GLC R+DE L ++M +++ PD ++ L GL GE
Sbjct: 256 LHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMAS-HSMLPDGFTYSILFDGLTRTGE 314
Query: 243 LSLALGFKEEMVRNKIEMDA 262
L E ++ + + A
Sbjct: 315 SQTMLSLFAESLKKGVMLGA 334
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+L++ L R+ DE +++++ L++ + P+ + + +IS + AL++
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG-LRPDVVSYNTIISACCNKGDTDKALEL 601
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM+ + ++ T+++ +TL++A+ + G++ M L+ Q++ K V P + Y I++ V
Sbjct: 602 LQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV- 660
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTF 194
R E+ KV LK+ + + F
Sbjct: 661 --RCENDSKVAS--LKKEMSEKGIAF 682
>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 573
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 120/227 (52%), Gaps = 6/227 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
+N + ++P N++ Y+++I L D V IL ++ ++T + P + + +++
Sbjct: 309 SNLLSHGMQP---NVVTYNILIHSLSLHGYSDVVDDIL-KIMNETSISPTLVTYNILLNS 364
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPD 155
++ L+ ++ ++ +M S N + ++NTLLNA+ G ID L + SP
Sbjct: 365 LCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCKEGFIDESIQLLHSLSGTNCSPG 424
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNI+++G R ++ A +++ EM+++ + P +T TL++GLC + +EA+++ +
Sbjct: 425 LVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYITHRTLVWGLCQVYQFEEAVEIFK 484
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
M R+ K + +I GLC +L A+ + MV+ + + D
Sbjct: 485 VMHRI-GQKIKGYAYKCVILGLCEQKKLDSAIQALDLMVKAQCKPDG 530
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ L + DE Q+LH L T P + + VI+ R R ++ A ++
Sbjct: 389 DIVTYNTLLNALCKEGFIDESIQLLHSLS-GTNCSPGLVTYNIVINGLARMRSIKSAKEM 447
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVV 168
+ EM + + TL+ + + + ++F++M + +Y ++ G
Sbjct: 448 YGEMVEKGIDPDYITHRTLVWGLCQVYQFEEAVEIFKVMHRIGQKIKGYAYKCVILGLCE 507
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++L+ A + D M+K + +P + TL+ + E V+EA L + ++ + +K
Sbjct: 508 QKKLDSAIQALDLMVKAQCKPDGKIYYTLLKSVANEGMVNEANDLHQRLIELKILKDGCL 567
Query: 229 VFAS 232
+ +
Sbjct: 568 IVGA 571
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N +L ++ + GK+ L ++M + P S L+ G + +++ K+ + M+
Sbjct: 114 NKILQSLCSRGKLTAAARLVEVMARMSQIPHFPSCTNLIRGLIRIGQVDKGCKIMNMMVM 173
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
P +TF +I LC + AL+ E M + PDA+ + ++I+ + G+ +
Sbjct: 174 SGGVPDTITFNAVIGSLCKRGHLKSALEFLEG-MSLSGCLPDAKTYNTIIRCIFDKGDPN 232
Query: 245 LALGFKEEMVR 255
LA+ F ++ +R
Sbjct: 233 LAVSFWKDQLR 243
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 43/217 (19%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT--------- 134
VP+ I F VI + L+ AL+ + MS K++NT++ +
Sbjct: 177 VPDTITFNAVIGSLCKRGHLKSALEFLEGMSLSGCLPDAKTYNTIIRCIFDKGDPNLAVS 236
Query: 135 ---------------------------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167
CG + L + + PD YN L++
Sbjct: 237 FWKDQLRKGFPPYLITYALLVELVCKHCGASRALEVLEDMAREGCCPDINMYNSLVNFSS 296
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN---VK 224
+D V +L +QP +VT+ LI+ L L D + +D++++ N +
Sbjct: 297 KQGNYKDTALVISNLLSHGMQPNVVTYNILIHSLSLHGYSD----VVDDILKIMNETSIS 352
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + L+ LC G L ++ +MV D
Sbjct: 353 PTLVTYNILLNSLCKSGFLDRSISLYIKMVSENCSPD 389
>gi|15221069|ref|NP_172629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200551|sp|Q9SAB4.1|PPR33_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g11630, mitochondrial; Flags: Precursor
gi|4835794|gb|AAD30260.1|AC007296_21 Strong similarity to gi|3367521 F8K4.8 from Arabidopsis thaliana
BAC gb|AC004392 [Arabidopsis thaliana]
gi|14326576|gb|AAK60332.1|AF385742_1 At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|19548051|gb|AAL87389.1| At1g11630/F25C20_22 [Arabidopsis thaliana]
gi|21593339|gb|AAM65288.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|332190642|gb|AEE28763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 405
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 80/334 (23%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNN----TEAQPLKP-FRYNLLHYDLI 57
K+ +S F L SL QK + L L K+ N NP+ + L P + + + + +
Sbjct: 23 KSSSSSIFTLKSLTSKQKKSRDTLSLLKSEN-NPDRILEICRSTSLSPDYHVDRIIFSVA 81
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ L R K F V Q+L + E I YGRA +L+ ++Q F + +
Sbjct: 82 VVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYE 141
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLF-------------------------------- 145
+ RTVKS N LL A L ++
Sbjct: 142 IPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSS 201
Query: 146 -----QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV---------------------- 178
++ K++ P A S+ +++ G + ++ KV
Sbjct: 202 YSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQC 261
Query: 179 -------------FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
D ++ R++P VT+ LI+G C E +DEA+ L E +M KP
Sbjct: 262 LCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFE-VMVCNGYKP 320
Query: 226 DAQVFASLIKGLCAVGELSLALGF-KEEMVRNKI 258
D++ + +LI LC G+ AL +E M +N +
Sbjct: 321 DSECYFTLIHCLCKGGDFETALILCRESMEKNWV 354
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM- 148
F VIS YG +RL E A++VF+ + F +T + +N LL+A+ G L + M
Sbjct: 150 FSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAYKLLRRMA 209
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K V+PD +++ L+ S +L +A D+M R +P + L+ GL R++
Sbjct: 210 RKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGRLE 269
Query: 209 EALKLKEDMMRVY--NVKPDAQVFASLIKGLCAVGELSLALG 248
EA K +R+ V PD F SL + LC G++ A+G
Sbjct: 270 EA---KAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVG 308
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
RA LE A ++ V V +FN+L A+ G ++ L + + PD
Sbjct: 264 RAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCPDIS 323
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y +++ + R+E+A+++F ++ +P + ++ LC R +A D
Sbjct: 324 TYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAFFGD- 382
Query: 218 MRVYNVKPDAQVFASLIKGLCAVG 241
M+ P+ V+ L+K +C G
Sbjct: 383 MKSKGHPPNRPVYVMLVK-MCVRG 405
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+SP S I +G SR E A +VF+ + T + L+ LC A
Sbjct: 145 LSPATFSAVISSYGH--SRLAEQAVEVFNRLPHFGCPQTTEVYNALLDALCANGNFAGAY 202
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KL M R V PD F++L+ CA G+L A F ++M
Sbjct: 203 KLLRRMAR-KGVAPDRATFSTLVDAWCASGKLREAQAFLDDMA 244
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Query: 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+N + ++ L +A+ + QI I + +I + +A +E A Q
Sbjct: 67 HNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQ 126
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ EM V + ++++ A+ G + R F+ +PD+ +NIL+HG
Sbjct: 127 LLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR-ESVECAPDSVLFNILVHGLCK 185
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +L +A ++ +EM +R + P +VT+ +LI GLC R++EA +L E M++ V+P+
Sbjct: 186 ANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVK-RKVRPNLV 244
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C G LA E M+++ D
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPD 277
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I+ + D+ ++LH +K P + + +IS A A ++
Sbjct: 277 DVVTFNSLISGFCQKSKIDKACEVLHLMKKGL-CAPNLVTYNVLISGLCDAGRANEACEL 335
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
EM + + ++N+L+ +I++ + +M E+ V PD SY L +
Sbjct: 336 LSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLK 395
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S R ++A+ + D M P L TF +L+ GLC R+DEA L M RV P A
Sbjct: 396 SERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRV-GCDPAAS 454
Query: 229 VFASLIKGLCAVGEL 243
+ L+ GLC G +
Sbjct: 455 TYEVLVTGLCKAGRV 469
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 99/210 (47%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L +A E +Q++ ++ + +VP+ + + ++I ++ +E A Q+ + M
Sbjct: 176 FNILVHGLCKANQLSEARQMIEEMS-ERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETM 234
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
V+ + ++NTL+ G L + +++ PD ++N L+ G ++
Sbjct: 235 VKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKI 294
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A +V M K P LVT+ LI GLC R +EA +L + M + PD + S
Sbjct: 295 DKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSE-MDGRGILPDIITYNS 353
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C ++ A + MV + D
Sbjct: 354 LIGIFCRNFQIEQAFQIQNLMVERGVIPDG 383
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I R ++ QI L + V+P+ I +C + ++ + A +
Sbjct: 347 DIITYNSLIGIFCRNFQIEQAFQI-QNLMVERGVIPDGISYCTLAVALLKSERFDEAFAL 405
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D M + +FN+L+ + ++D L +M + P A +Y +L+ G
Sbjct: 406 LDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCK 465
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ R++DA +V M+ +QP + + GT+++ L E + D AL
Sbjct: 466 AGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLAL 508
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 109/200 (54%), Gaps = 3/200 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K + +L+ Y +I L + D +L++++ ++ + +I+ VI +
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG-KIEADVVIYSTVIDSLCK 252
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
R ++ AL +F EM + ++ V ++++L++ + G+ + L ++E+ ++P+ +
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ +L +A K+FDEM++R + P +VT+ +LI G C+ R+DEA ++ +M
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LM 371
Query: 219 RVYNVKPDAQVFASLIKGLC 238
+ PD + +LI G C
Sbjct: 372 VSKDCLPDVVTYNTLINGFC 391
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 11/218 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK + ++ + +V + + +I + +A ++A V
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSR-RGLVGNTVTYTTLIHGFFQASDCDNAQMV 437
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + ++NTLL+ + GK+++ +F+ ++K + PD +YNI+ G
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVK 224
+ ++ED W +F + + ++P ++ + T+I G C + +EA +K+KED
Sbjct: 498 AGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED-----GPL 552
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD+ + +LI+ G+ + + +EM + DA
Sbjct: 553 PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 52/281 (18%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ +P LAL L N E ++ +++ Y +I L + + D+ + ++
Sbjct: 218 RGEPDLALNLL-------NKMEKGKIEA---DVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ + P+ + ++IS YGR A ++ +M + V +FN+L++A
Sbjct: 268 -NKGIRPDVFTYSSLISCLCNYGR---WSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 136 GKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK+ LF +++++ + P+ +YN L++G + RL++A ++F M+ + P +VT+
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 195 GTLIYGLCLELRVDEALKLKEDMMR--------VY------------------------- 221
TLI G C +V + ++L DM R Y
Sbjct: 384 NTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V P+ + +L+ GLC G+L A+ E + ++K+E D
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 6/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLL 103
+PF +++ + +++ + + K FD V I K + V + N+ I+ R L
Sbjct: 60 RPFP-SIVEFSKLLSAIAKMKKFDLV--ISFGEKMEILGVSHNLYTYNIMINCLCRRSQL 116
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
AL + +M ++ + N+LLN +I L Q++E PD ++ L
Sbjct: 117 SFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTL 176
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+HG + +A + + M+ + QP LVT+G +I GLC D AL L M +
Sbjct: 177 VHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG-K 235
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ D +++++I LC + AL EM I D
Sbjct: 236 IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + F ++ + A+ + + M Q + ++ ++N + G+ D +L
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
MEK + D Y+ ++ R ++DA +F EM + ++P + T+ +LI LC
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R +A +L DM+ + P+ F SLI G+L A +EM++ I+
Sbjct: 288 YGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y+ +I+ + + Q+L+++K +P+ + + +I R L AL+V
Sbjct: 136 DVFAYNAVISGFCKVNRIEAATQVLNRMKARG-FLPDIVTYNIMIGSLCNRRKLGLALKV 194
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
D++ N TV ++ L+ A + G I+ L + ++ + + PD +YN ++ G
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ K+ EM R +P VT+ LI LC R+DEA+ + + M+ + PD
Sbjct: 255 EGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE-KELTPDTY 313
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ LI LC G L LA+G + M+ N
Sbjct: 314 SYDPLISALCKEGRLDLAIGIMDYMISN 341
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 4/199 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K ++ +++ L+ T P+ + VIS + + +E A QV + M + + +
Sbjct: 117 KNIEKASRVMEILESHTE--PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVT 174
Query: 125 FNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N ++ ++ K+ + L Q++ P +Y IL+ +V + +A K+ +EML
Sbjct: 175 YNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEML 234
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
R L P + T+ +I G+C E DE KL +M +P+ ++ LI LC G +
Sbjct: 235 ARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFS-RGCEPNKVTYSILISSLCRFGRI 293
Query: 244 SLALGFKEEMVRNKIEMDA 262
A+ + M+ ++ D
Sbjct: 294 DEAISVLKVMIEKELTPDT 312
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 3/204 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +++ Y+++I L + ++L QL D +P I + +I +
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDN-CMPTVITYTILIEATIVEGGIN 224
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+++ +EM + + + ++N ++ M G D L ++ + P+ +Y+IL+
Sbjct: 225 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILI 284
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
R+++A V M+++ L P ++ LI LC E R+D A+ + D M
Sbjct: 285 SSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM-DYMISNGC 343
Query: 224 KPDAQVFASLIKGLCAVGELSLAL 247
PD + +++ LC G + AL
Sbjct: 344 LPDIVNYNTILAALCKNGNANQAL 367
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L+ I++ + + +I+E + PD +YN ++ G R+E A +V + M R
Sbjct: 109 LIKGFFNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGF 168
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P +VT+ +I LC ++ ALK+ D + + N P + LI+ G ++ A+
Sbjct: 169 LPDIVTYNIMIGSLCNRRKLGLALKVL-DQLLLDNCMPTVITYTILIEATIVEGGINEAM 227
Query: 248 GFKEEMV 254
EEM+
Sbjct: 228 KLLEEML 234
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P+ + +I + + + ++ EM S + +++ L++++ G+ID
Sbjct: 238 LLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAI 297
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ ++M EK ++PD SY+ L+ RL+ A + D M+ P +V + T++ L
Sbjct: 298 SVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL 357
Query: 202 CLELRVDEALKL 213
C ++AL++
Sbjct: 358 CKNGNANQALEI 369
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 3/200 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N+ Y +I LG++ D+ + ++ + +V +++ ++I GR+ + A
Sbjct: 191 RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEG-LVATRVVYNSLIHGLGRSGRADAAA 249
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
++F EM S +Q +F +L+ + G+ +FQ + + D YN+L+
Sbjct: 250 KLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTL 309
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S+RL++AW++F E+ + L P + TF L+ GLC R+ +A L DM R PD
Sbjct: 310 CKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA-GCTPD 368
Query: 227 AQVFASLIKGLCAVGELSLA 246
V+ +LI GL G + A
Sbjct: 369 VTVYNTLIDGLRKSGRVEEA 388
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+R + + IF + Y A LLE +++ M T ++N+L++A + G +
Sbjct: 48 SRYILQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQK 107
Query: 141 MTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
++++M + + PD ++N+LM+ ++R++ WK+F+EM + P ++T+ LI
Sbjct: 108 ALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILID 167
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+C V++ALK+ D M+ +P+ + S+I GL G + A EEM
Sbjct: 168 AVCKCGGVEKALKVFLD-MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMT 221
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 12/212 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++ LG A E ++I + + D + ++ +I +++ L+ A ++F E+
Sbjct: 270 LVYGLGVAGRASEARRIFQEAR-DVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEED 328
Query: 117 NVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+ V +FN L++ + G+I D L + +PD YN L+ G S R+E+A
Sbjct: 329 GLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEA 388
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ--VFASL 233
++ EM +P +VT+ TLI C R+++AL+L E++ + K A + ++
Sbjct: 389 GQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI----SAKGFANTVTYNTI 444
Query: 234 IKGLCAVGELSLAL----GFKEEMVRNKIEMD 261
+ GLC G + A G K+E V I+ D
Sbjct: 445 LNGLCMAGRVDEAYKLFNGMKQETVDGVIDPD 476
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 82/185 (44%), Gaps = 38/185 (20%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRV------------------------------ 83
Y+++I L ++K DE +I +L+ D V
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361
Query: 84 ----VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139
P+ ++ +I ++ +E A Q+ EM S + V ++NTL++ G+I+
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIE 421
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQPTLVTFG 195
LF+ + + +YN +++G ++ R+++A+K+F+ M + + P VT+
Sbjct: 422 DALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYT 481
Query: 196 TLIYG 200
TL+ G
Sbjct: 482 TLLNG 486
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA + P N++ Y+ +I RA + DE + L + P+E +C +IS + R
Sbjct: 346 EAAGISP---NIVTYNELIAAYARAGLCDEAAALKKSLLSKG-LCPDEFTYCTLISAFNR 401
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
A E AL+ F EM N + ++N L++ K+D M +F+ M EK +PD +
Sbjct: 402 AERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVT 461
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI--YGLCLELRVDEALKLKED 216
+N L+ L + VF EM + P + TF LI YG C VD ++ + +
Sbjct: 462 WNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRC--GYVDYSVDIYKG 519
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++R ++P FA+L+ L G +EM +++
Sbjct: 520 LLRT-GLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLS 563
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I++ LG + ++ LK D + + ++IS RAR + + +F+ M
Sbjct: 183 ILSVLGNHEQLPAALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQRE 242
Query: 117 NVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLED 174
+ ++N +L+ G DR+ LFQ M+ +SPD +YN ++ C+ + ++
Sbjct: 243 GQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQE 302
Query: 175 AWKVFDEMLKRRLQPTLVTFGTL--IYG 200
A ++F EM + P VT+ L +YG
Sbjct: 303 ALRLFQEMKEAGCCPNRVTYNALLDVYG 330
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 3/175 (1%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+ M +E Q L+QL +D P+ +F +IS + +E A+++ +E+ ++
Sbjct: 612 KCGMDNEAQLALNQL-YDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDG 670
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSRRLEDAWKVFDE 181
++N L++ G + ++ M + +P+ +YN L++ R++DA +VF +
Sbjct: 671 VTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGD 730
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
M+ R++P TF TL+ EAL + E M + +P F +L+ G
Sbjct: 731 MVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTE-HGCQPTQITFKALLDG 784
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 3/208 (1%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
H LI + + F ++++ + +L+ + I+ + Y + + A ++
Sbjct: 567 HAGLIHSYANSGQFF-QLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQ 625
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRR 171
+ +K FN +++ G I+R L +I + + PD +YN LM
Sbjct: 626 LYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGM 685
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
A +V EM + P L+T+ TL+Y R+D+A ++ DM+ V+PD F
Sbjct: 686 YYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAA-RVRPDNFTFN 744
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259
+L+ ++G AL E M + +
Sbjct: 745 TLVGSYSSLGLYKEALSVIEYMTEHGCQ 772
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 98/249 (39%), Gaps = 37/249 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+++I GR + D++ ++ + + P+ + + +++ +G +L V
Sbjct: 423 NIVTYNILIDIYGRMEKLDDMMKVF-KFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNV 481
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F EM V +FN L+ CG +D D+++ ++ + P ++ LM
Sbjct: 482 FREMKRAGYMPGVDTFNILIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAR 541
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-----GLCLELR----------------- 206
R + KV EM + LQ + LI+ G +LR
Sbjct: 542 EGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGI 601
Query: 207 -------------VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+D +L + + PD +VF ++I G + A+ EE+
Sbjct: 602 LCKTFVLAYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEI 661
Query: 254 VRNKIEMDA 262
+ +++ D
Sbjct: 662 RKAQLKPDG 670
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM- 148
F VIS YG +RL E A++VF+ + F +T + +N LL+A+ + G L + M
Sbjct: 155 FSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAYKLLRRMA 214
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K V+PD +++ L+ S +L +A D+M R +P + L+ GL R++
Sbjct: 215 RKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGRLE 274
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
EA + V PD F SL + LC G++ A+G
Sbjct: 275 EAKAFAVRFTK-EGVLPDVATFNSLAQALCDAGDVKFAVG 313
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDAC 157
RA LE A + V V +FN+L A+ G + L + + PD
Sbjct: 269 RAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDIS 328
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y +++ + ++E+A+++F ++ +P + ++ LC R +A D
Sbjct: 329 TYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAGRFGDAFAFFGD- 387
Query: 218 MRVYNVKPDAQVFASLIKGLCAVG 241
M+ P+ V+ L+K +C G
Sbjct: 388 MKSKGHPPNRPVYVMLVK-MCVRG 410
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+SP S I +G SR E A +VF+ + T + L+ LC A
Sbjct: 150 LSPATFSAVISSYGH--SRLPEQAVEVFNRLPHFGCPQTTEVYNALLDALCSNGNFAGAY 207
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
KL M R V PD F++L+ CA G+L A F ++M
Sbjct: 208 KLLRRMAR-KGVAPDRATFSTLVDAWCASGKLREAQAFLDDMA 249
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 107/201 (53%), Gaps = 11/201 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ ++ Y +II L + + DE + + ++K + P VIS+ + + E A
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQG-MTP------TVISY--TSLMWEEA 288
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
++F+EM + VQ V +FN L++ + GK+ DL ++M ++ + P+ +YN L+ G
Sbjct: 289 KRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEG 348
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A ++F M + +P ++ + LI G C +V+EA+KL M++V +P
Sbjct: 349 FCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQV-GKRP 407
Query: 226 DAQVFASLIKGLCAVGELSLA 246
D + + +L+ GL G++ A
Sbjct: 408 DVKTYGALLTGLFQGGKVGDA 428
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----QIMEKYVSPDACSYN 160
A Q F M N + SF LL+ + KI + +F Q+ +SPD C+ N
Sbjct: 79 QAFQFFHLMMYSNPTPPLSSFTHLLSGL---AKIKHYSQVFYLYNQMRLSGISPDCCTLN 135
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++ R+ + V +L+R P +VT+ TLI GLC+E R+ +A L M ++
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
P+A + +L+KGLC G +S+AL +EM+ +
Sbjct: 196 -GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 37/214 (17%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ I + +I+ Y + +E A+++++ M + VK++ LL + GK+ L
Sbjct: 372 PDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431
Query: 145 FQIMEKYVSP---------------DAC------------SYNI---------LMHGCVV 168
F +M+ Y P + C SYNI L+ G
Sbjct: 432 FGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCK 491
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +LE AW++F+++ + LQP +VT+ +I+ C +V +A L + M + PD
Sbjct: 492 AGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEK-NGCTPDKI 550
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+A+LI+G +L + MV+ + +D
Sbjct: 551 TYATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 584
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y + + L + E ++ ++LK + E C +I +A LE A ++
Sbjct: 443 DLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNC-LIDGLCKAGKLETAWEL 501
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+++ +Q V ++N +++ G++ + LFQ MEK +PD +Y L+ G
Sbjct: 502 FEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFE 561
Query: 169 SRRLEDAWKVFDEMLKR 185
S++LE ++ M++R
Sbjct: 562 SKKLEKVVELLHMMVQR 578
>gi|449445756|ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
gi|449526108|ref|XP_004170056.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
Length = 497
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 16/258 (6%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRAKM 66
+P L+ ++R Q +P+ A QLFK EA+ P +R+N Y +I LG +
Sbjct: 10 TPTCLSQIIRKQNNPQTAYQLFK---------EAKCRYPDYRHNGPVYATMINILGNSGR 60
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
E+++++ Q++ D+ ++ +F I Y LLE + +F FN ++FN
Sbjct: 61 VSEMREVMDQMRDDS-CECKDSVFSFAIKTYASHGLLEDGISLFKSFGRFNCTNRTQTFN 119
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
TLL +L ++ LFQ V S N+LM + E A VF EM
Sbjct: 120 TLLEILLKESQLHAACQLFQECSYGWGVKSRTQSLNLLMQSLCQRGQSELALHVFQEMDY 179
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK---PDAQVFASLIKGLCAVG 241
+ P +++ ++ GLC + R++EA+ L M + K D ++ +L+ LC G
Sbjct: 180 QSCYPNRLSYLIVMKGLCQDGRLNEAIHLLYSMFWRISRKGGGGDIVIYRTLLFALCDNG 239
Query: 242 ELSLALGFKEEMVRNKIE 259
E+ A+ +++R ++
Sbjct: 240 EIEQAVEILGKILRKGLK 257
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 136 GKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPT 190
GK+D D +++E+ + P YNI++ G + A + +M K+ L
Sbjct: 346 GKVD---DAVKVIEEQIVGGCVPTIALYNIVLKGLCDDGKSTVAMEYLKKMAKQVGLVAN 402
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
T+ TL++GLCLE R EA K+ E+M+ + + P + F +LIKGLC+VG+ A+ +
Sbjct: 403 KETYSTLVHGLCLENRYIEACKVLEEMV-IKSFCPCSNTFNTLIKGLCSVGKHYEAVMWL 461
Query: 251 EEMV 254
EEM+
Sbjct: 462 EEMI 465
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYN 160
++ A++V +E T+ +N +L + GK + + M K V + +Y+
Sbjct: 348 VDDAVKVIEEQIVGGCVPTIALYNIVLKGLCDDGKSTVAMEYLKKMAKQVGLVANKETYS 407
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+HG + R +A KV +EM+ + P TF TLI GLC + EA+ E+M+
Sbjct: 408 TLVHGLCLENRYIEACKVLEEMVIKSFCPCSNTFNTLIKGLCSVGKHYEAVMWLEEMISQ 467
Query: 221 YNVKPDAQVFASLIKGLCA 239
+ P V+ SL+ LC
Sbjct: 468 GQL-PHVCVWNSLVSSLCC 485
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176
N T++ +L+N L G I P + SY + + +
Sbjct: 273 NSNLTIEEIKSLINEALIKGGI---------------PSSDSYCAMAVDLYNENKTDQGD 317
Query: 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236
KV M+ + +P + + LC E +VD+A+K+ E+ + V P ++ ++KG
Sbjct: 318 KVVSHMIAKGFRPPSLIYEAKAASLCKEGKVDDAVKVIEEQI-VGGCVPTIALYNIVLKG 376
Query: 237 LCAVGELSLALGFKEEMVR 255
LC G+ ++A+ + ++M +
Sbjct: 377 LCDDGKSTVAMEYLKKMAK 395
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 109/210 (51%), Gaps = 4/210 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R ++ Y +I LG+A DE H+++ + P+ ++ N+I+F G+A L+ A+
Sbjct: 293 RPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREG-CRPDTVLMNNMINFLGKAGRLDDAI 351
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
++F+EM + +V ++NT++ A+ ++ ++ F+ M+ +SP +Y+IL+ G
Sbjct: 352 KLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDG 411
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R E A + +EM ++ P + +LI L R D A +L +++
Sbjct: 412 FCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCG-SS 470
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
A+V+A +IK L G L A+ +EM R
Sbjct: 471 SARVYAVMIKHLGKAGRLDDAVDLFDEMNR 500
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 113/234 (48%), Gaps = 15/234 (6%)
Query: 8 SPFRLASLLRLQKDPKL---ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
+P L+ ++R+ + K+ A+ +F +A+ +P + Y+ +I L
Sbjct: 154 TPMELSDIIRMLGNAKMISKAVAIFYQ-------IKARKCQPTAHA---YNSMIIMLMHE 203
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+++V ++ +++ ++ + P+ + + +IS + + + A+ + +EM +Q T K
Sbjct: 204 GEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKI 263
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ L+ + + LF+ M +Y PD +Y L+ G + RL++A+ F EM
Sbjct: 264 YTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMR 323
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ +P V +I L R+D+A+KL E+M + + P + ++IK L
Sbjct: 324 REGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCI-PSVVTYNTIIKAL 376
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + ++ Y +I L + + E+ +++ ++ + V + ++I G A+++
Sbjct: 113 RNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMIS 172
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNIL 162
A+ +F ++ + Q T ++N+++ ++ G+ +++ +L+ M E PD +Y+ L
Sbjct: 173 KAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSAL 232
Query: 163 MHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRV 220
+ C + R+ W + +EM +QPT + T++ L +L V AL L E+M
Sbjct: 233 ISAFCKLGRQDSAIW-LLNEMKDNGMQPTAKIY-TMLMALLFKLDNVHGALGLFEEMRHQ 290
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
Y +PD + LI+GL G L A F EM R D
Sbjct: 291 Y-CRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPD 330
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK +D ++ +LK + + + +I G+A L+ A+ +FDEM
Sbjct: 440 YCSLIDALGKAKRYDLANELFQELKENCGSSSARV-YAVMIKHLGKAGRLDDAVDLFDEM 498
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V ++N L++ + G +D +T + ++ + PD SYNI+++ +
Sbjct: 499 NRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGP 558
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A + M + ++P V++ T++ L +EA KL ++M + D ++S
Sbjct: 559 DRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAI-GFDYDLITYSS 617
Query: 233 LIKGLCAVGE 242
+++ + V +
Sbjct: 618 ILEAIGKVDQ 627
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 98/204 (48%), Gaps = 8/204 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+D ++ + +M DE + + +K E CN ++S R +E+A + +
Sbjct: 159 FDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTET--CNHILSLLSRLNRIENAWVFYAD 216
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M ++ V +FN ++N + GK+ + IME + + P +YN L+ G + R
Sbjct: 217 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGR 276
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + EM + QP L T+ ++ +C E R E L+ M+ + PD+ +
Sbjct: 277 IEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLR----EMKGIGLVPDSVSYN 332
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LI+G G+L A +++EMV+
Sbjct: 333 ILIRGCSNNGDLETAFAYRDEMVK 356
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + + ++ Y +E A + EM S Q ++++N +L+ M G R +
Sbjct: 257 IKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RAS 313
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++ + M+ + PD+ SYNIL+ GC + LE A+ DEM+K+ + PT T+ TLI+GL
Sbjct: 314 EVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGL 373
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+E +++ A L + +R + D+ + +I G C G+ A +EM+ + I+
Sbjct: 374 FMENKIEAAEILIRE-IREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIK 430
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Query: 45 KPFRYNLLHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
K F+ +L Y+ I++ + GRA ++L ++K +VP+ + + +I
Sbjct: 290 KGFQPDLQTYNPILSWMCNEGRA------SEVLREMK-GIGLVPDSVSYNILIRGCSNNG 342
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
LE A DEM + T ++NTL++ + KI+ L +I EK + D+ +YN
Sbjct: 343 DLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 402
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I+++G + A+ + DEM+ ++PT T+ +LIY LC + EA +L E ++
Sbjct: 403 IVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVG- 461
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+KPD + +L+ G CA G + A +EM R I+ D
Sbjct: 462 KGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPD 502
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 2/187 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +IL + + +V + + + VI+ Y + + A + DEM + ++ T ++ +L
Sbjct: 380 EAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSL 439
Query: 129 LNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + K +LF+ ++ K + PD N LM G + ++ A+ + EM + +
Sbjct: 440 IYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNI 499
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P VT+ L+ GLC E + +EA +L +M R +KPD + +LI G G+ A
Sbjct: 500 DPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 558
Query: 248 GFKEEMV 254
++EM+
Sbjct: 559 IVRDEML 565
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
++ A + EM N+ ++N L+ + GK + +L M++ + PD SYN
Sbjct: 484 MDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNT 543
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + A+ V DEML PTL+T+ L+ GL + A +L + M+
Sbjct: 544 LISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLRE-MKSE 602
Query: 222 NVKPDAQVFASLIKGL 237
+ P+ F S+I+ +
Sbjct: 603 GIVPNDSSFCSVIEAM 618
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 101/216 (46%), Gaps = 42/216 (19%)
Query: 85 PEEIIFCNVISFY----GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
P + F N++ G RL A VFD ++ + ++ +V SFNTL+N + G +D
Sbjct: 133 PASLYFFNILMHRFCKEGEIRL---AQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDE 189
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L M PD +Y++L++G ++++A ++FDEML++ L P VTF TLI
Sbjct: 190 GFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLID 249
Query: 200 GLCLELRVDEALKLKE----------------------------------DMMRVYNVKP 225
G C ++D A+++ + D M + +KP
Sbjct: 250 GHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKP 309
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D + +LI G C G+L A ++++M+ I +D
Sbjct: 310 DKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLD 345
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
H + P+ + +I+ + ++ A ++FDEM + +F TL++ GK+
Sbjct: 198 HASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKL 257
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D +++ QI+ + +SPD +YN L++G L+ + DEM + L+P +T+ TL
Sbjct: 258 DLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTL 317
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
I G C E ++ A + ++ M+ N++ D V+ +LI GLC G
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEE-NIRLDDVVYTALISGLCKEG 360
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 6/221 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N A +P Y Y ++I L + DE ++ ++ + +VP + F +I
Sbjct: 195 NAMHASGAQPDVYT---YSVLINGLCKESKMDEAHELFDEML-EKGLVPNGVTFTTLIDG 250
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPD 155
+ + L+ A++++ ++ S + + ++NTL+ G + + DL M K + PD
Sbjct: 251 HCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPD 310
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y L+ G LE A++ +M++ ++ V + LI GLC E R +A K+
Sbjct: 311 KITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLR 370
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+M+ V +KPD+ + ++ C G+++ +EM R+
Sbjct: 371 EMLSV-GLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRD 410
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 103/208 (49%), Gaps = 3/208 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L R ++ +E I +K + P+ + ++I + + A +
Sbjct: 232 NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKG-ISPDIFTYTSLIQGLCKFSRWKEASAL 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
+EM+S N+ + +FN L++ GK+ + + M E V P+ +Y+ LM+G +
Sbjct: 291 LNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSL 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+F M+ + +P + ++ LI G C R+DEA++L +M+ + P+
Sbjct: 351 WTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIH-QGLTPNNV 409
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +LI G C +G+L A M N
Sbjct: 410 SYNTLIHGFCQLGKLREAQDLFRNMCTN 437
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 106/209 (50%), Gaps = 6/209 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
+A+ + P ++ Y +I L + + E +L+++ ++P+ + F ++ + +
Sbjct: 260 KAKGISP---DIFTYTSLIQGLCKFSRWKEASALLNEMT-SLNIMPDIVTFNVLVDTFCK 315
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
+ AL V M+ V+ V ++++L+ + LF +M K P+ S
Sbjct: 316 EGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFS 375
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNIL++G ++R+++A ++F+EM+ + L P V++ TLI+G C ++ EA L +M
Sbjct: 376 YNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMC 435
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLAL 247
N+ PD ++ L+ G C G L A
Sbjct: 436 TNGNL-PDLFTYSILLDGFCKQGYLGKAF 463
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N+ Y+++I +AK DE Q+ +++ H + P + + +I + + L
Sbjct: 367 KGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG-LTPNNVSYNTLIHGFCQLGKLR 425
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILM 163
A +F M + + +++ LL+ G + + LF+ M+ Y+ P+ Y IL+
Sbjct: 426 EAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILV 485
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
H S +DA K+F E+ + LQP + + T+I GLC E +DEAL+ + M
Sbjct: 486 HAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRN-MEADGC 544
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD + +I+GL + S AL EM
Sbjct: 545 PPDEISYNVIIRGLLQHKDESRALLLVGEM 574
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I+ + A+++FD+M + Q V ++NT++N + G+ L
Sbjct: 161 PTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGL 220
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ ME+ P+ +Y+ L+ R + +A +F M + + P + T+ +LI GLC
Sbjct: 221 LKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCK 280
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R EA L +M + N+ PD F L+ C G++S ALG + M +E
Sbjct: 281 FSRWKEASALLNEMTSL-NIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVE 335
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 2/157 (1%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
V ++ +Q T+ +F TL+N + G+ + +LF M K PD +YN +++
Sbjct: 147 GFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIIN 206
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G A + +M + QP +VT+ TLI LC + V+EAL + M+ +
Sbjct: 207 GLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFS-YMKAKGIS 265
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD + SLI+GLC A EM I D
Sbjct: 266 PDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPD 302
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKY-VSPDACS 158
R ++ AL F+ M + F LL+A++ G+ D + L + ME +SP+ +
Sbjct: 71 RNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYT 130
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+I M+ +R++ + V +++K LQPT+VTF TLI GLC +A++L +DM+
Sbjct: 131 LSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMV 190
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+PD + ++I GLC +GE + A G ++M
Sbjct: 191 -AKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM 224
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 109/215 (50%), Gaps = 5/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
++Q LKP + + Y +I L +A E +++ Q++ + R VP + +I YG
Sbjct: 279 KSQGLKP---DDVSYTSMIWVLCKAGRLSEAEELFGQMETE-RAVPCAYAYNTMIMGYGS 334
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A E+A ++ D++ +V SFN++L + K+D LF+ M+K P++ +Y
Sbjct: 335 AGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTY 394
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NI++ ++ ++E+A+ + DEM L P L+T ++ LC + + A ++ E +
Sbjct: 395 NIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQ 454
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
P++ + SLI GL G + A E M+
Sbjct: 455 -RGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENML 488
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+A +E +F+++ + V+S++ L++ + G+ + +F M ++ + DA
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR 602
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN ++ G S +L+ A++V +EM +R+ PT+ T+G++I GL R+DEA L E+
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE- 661
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + V++SLI G VG + A EEM++ +
Sbjct: 662 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL 702
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 3/217 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + Y+ ++ ++ D+ ++L ++K RV P + ++I + L+ A
Sbjct: 597 FALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVK-RVPPTVATYGSIIDGLAKIDRLDEA 655
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+F+E S ++ V +++L++ G+ID + ++M+K ++P+ ++N LM
Sbjct: 656 YMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 715
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
V + + +A F M + + P T+ LI GLC + ++A ++M + + P
Sbjct: 716 LVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQK-QGLVP 774
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + ++I GL VG ++ A E N DA
Sbjct: 775 NVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDA 811
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y II L + DE + + K + I++ ++I +G+ ++ A + +EM
Sbjct: 639 YGSIIDGLAKIDRLDEAYMLFEEAKSKG-IELNVIVYSSLIDGFGKVGRIDEAYLILEEM 697
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V ++N+L++A++ +I+ FQ M E SP+ +Y+IL++G ++
Sbjct: 698 MKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKY 757
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A+ + EM K+ L P +VT+ T+I GL + +A L E + PDA F +
Sbjct: 758 NKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFE-RFKANGGTPDAASFNA 816
Query: 233 LIKGL 237
LI+G+
Sbjct: 817 LIEGM 821
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 27/257 (10%)
Query: 15 LLRLQKDPKLALQLF-----KNPNPNPNNTEAQPLKPFRYNL------------LHYDL- 56
+LR ++P LA F +P+P P + L ++L L Y +
Sbjct: 87 VLRTLRNPSLAAPFFLASSAASPHPLPADAYNAVLPFLSHDLAAMEKVLEEMSVLGYGVP 146
Query: 57 ------IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
+++ L R + D+ ++++ ++ + P + +I AR E AL++
Sbjct: 147 NPACADLVSALVRTRRLDDAERVIAAMRR-LKFRPAFSAYTVLIGAMAEARQPERALELL 205
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVS 169
+M + V F TL+ A+ G+++ L ++ + PD YN+ + +
Sbjct: 206 RQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKA 265
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
++ AWK F E+ + L+P V++ ++I+ LC R+ EA +L M P A
Sbjct: 266 GNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELF-GQMETERAVPCAYA 324
Query: 230 FASLIKGLCAVGELSLA 246
+ ++I G + G+ A
Sbjct: 325 YNTMIMGYGSAGQFENA 341
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N Y++II L A +E I +++H + P + ++ +A+ E A ++
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEH-AGLFPNLLTVNIMVDRLCKAKKFEPAYEM 448
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F+ S ++ +L++ + G +D LF+ +++ + + Y L+ +
Sbjct: 449 FETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFM 508
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R ED K+F EM +R QP L T + + V++ + ED ++ Y PD +
Sbjct: 509 HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFED-IKGYGFLPDVR 567
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ LI GL G+ M + +DA
Sbjct: 568 SYSILIHGLTKAGQARETSSIFHAMKQQGFALDA 601
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++ ++ L +A+ +E +K + + P + +I+ R + A
Sbjct: 705 NVYTWNSLMDALVKAEEINEALICFQSMK-EMKCSPNTYTYSILINGLCRVQKYNKAFVF 763
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
+ EM + V ++ T++ + G I LF+ +PDA S+N L+ G
Sbjct: 764 WQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSH 823
Query: 169 SRRLEDAWKVFDE 181
+ R +A+ VF+E
Sbjct: 824 ANRAIEAYHVFEE 836
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 5/195 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
Y ++I LG + DE + Q K P E+ CN V+ Y RA EHA ++ DE
Sbjct: 343 YCMLINGLGSEERLDEALKYFEQYKKSG--FPMEVPTCNAVVGAYCRASKFEHAFKMVDE 400
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M + ++++ +L+ ++ K + ++FQ M P +Y +++ + R
Sbjct: 401 MRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGR 460
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
++ A V+ +M +R + P + F LI GLC E R++EA ++M+ ++P Q+F+
Sbjct: 461 VDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLD-KGIRPPGQLFS 519
Query: 232 SLIKGLCAVGELSLA 246
+L + L G +SLA
Sbjct: 520 NLKEALVEGGRISLA 534
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 108/214 (50%), Gaps = 7/214 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y ++I+ ++ DE ++ ++++ + +P ++C +I+ G L+ AL
Sbjct: 302 RPDVVAYGMLISAFCKSGKCDEAIKVFYEMEA-SGCMPSPHVYCMLINGLGSEERLDEAL 360
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMH 164
+ F++ V + N ++ A K + +M D ++ E + P++ +Y++++H
Sbjct: 361 KYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVD--EMRECKIGPNSRTYDVILH 418
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ S++ E+A+ VF M +P L T+ ++ C RVD AL + + M V
Sbjct: 419 YLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGE-RGVL 477
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P +F++LI GLC L A + +EM+ I
Sbjct: 478 PCMHMFSALINGLCFENRLEEACVYFQEMLDKGI 511
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 118/289 (40%), Gaps = 50/289 (17%)
Query: 8 SPFRLASLLR-LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM 66
SP +A +L+ L LAL F+ A+ + F Y + +I LG+ K
Sbjct: 130 SPELVAEVLKNLSNAGMLALAFFR---------WAERQEGFSYTAEGFHNLIEALGKIKQ 180
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F V ++ ++ R + + F ++ Y RAR ++ A++ F++MS F ++ + +N
Sbjct: 181 FKLVWSLVETMR--CRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYN 238
Query: 127 TLLNAMLTCGKIDRMTDLFQ-----------------IMEKY------------------ 151
L++ + ++ + +++ +ME +
Sbjct: 239 WLIDTLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMID 298
Query: 152 --VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+ PD +Y +L+ S + ++A KVF EM P+ + LI GL E R+DE
Sbjct: 299 AGIRPDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDE 358
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
ALK E + + +++ C + A +EM KI
Sbjct: 359 ALKYFEQYKKS-GFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKI 406
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E + +I +R LE AL + EM R V +NTL++ +I+ ++
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME + VS D+ +YN L+ G S+R+EDA ++ D+M+ L+P T+ +L+ C
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ +A + + M PD +A+LI GLC G + +A
Sbjct: 566 TGDIKKAADIVQTMTS-SGCNPDIVTYATLISGLCKAGRVQVA 607
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ II+ L + DE +I L ++P+ F ++I + + A+ +
Sbjct: 377 NAVTYNAIISSLCKENRVDEATEIARLLTSKG-ILPDVCTFNSLIQGLCLSSNHKSAMDL 435
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + ++N L++++ + K++ +L + ME + + YN L+ G
Sbjct: 436 FEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCK 495
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++R+E+A ++FDEM + + VT+ TLI GLC RV++A +L D M + ++PD
Sbjct: 496 NKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM-DQMIMEGLRPDKF 554
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ SL+ C G++ A + M + D
Sbjct: 555 TYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPD 587
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 128/284 (45%), Gaps = 34/284 (11%)
Query: 8 SPFRLASLLRLQKDPKLALQLF----KNPNPNPNNT----------------------EA 41
+P +L LR Q D AL++F K PN P+++ E
Sbjct: 63 TPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRRVLEE 122
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF---CNVISFYG 98
L ++ + + + G+ +++DEV I+ ++ + R+ P+ + NV+
Sbjct: 123 MKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDAN 182
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDAC 157
+ +L+E A M ++ V +FN L+ A+ ++ + + M Y +SPD
Sbjct: 183 KLKLVESA---HSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDET 239
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++ +M G + L+ A ++ ++M++ T VT LI G C + R+D+AL ++
Sbjct: 240 TFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEA 299
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +PD + +L+ GLC +G A+ + M+ ++ D
Sbjct: 300 VS-EGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPD 342
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 38/243 (15%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
R+++ ++++I L +A ++ ++ + P+E F ++ Y L+ A
Sbjct: 199 IRHDVSTFNILIKALCKAHQVRPAILMMEEMP-SYGLSPDETTFTTIMQGYIEGGNLDGA 257
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKY------------- 151
L++ ++M + T + N L+N G+ID+ Q + E +
Sbjct: 258 LRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNG 317
Query: 152 ---------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ PD +YN L+ G +E+A K+ D+M+ R P
Sbjct: 318 LCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPN 377
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ +I LC E RVDEA ++ ++ + PD F SLI+GLC A+
Sbjct: 378 AVTYNAIISSLCKENRVDEATEIAR-LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLF 436
Query: 251 EEM 253
EEM
Sbjct: 437 EEM 439
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 8/217 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F YN L L K+G AK EV + D P+ + ++IS + +E A
Sbjct: 309 FTYNTLVNGL--CKIGHAKHAMEVVDAMLLGGLD----PDIYTYNSLISGLCKLGEIEEA 362
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+++ D+M S + ++N +++++ ++D T++ +++ K + PD C++N L+ G
Sbjct: 363 VKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQG 422
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+S + A +F+EM + +P T+ LI LC +++EAL L ++ M +
Sbjct: 423 LCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKE-MELNGCAR 481
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ ++ +LI G C + A +EM + D+
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDS 518
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 117/278 (42%), Gaps = 53/278 (19%)
Query: 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH 75
L L + K A+ LF E K R + Y+++I L ++ +E +L
Sbjct: 423 LCLSSNHKSAMDLF----------EEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLK 472
Query: 76 QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+++ + +I+ +I + + + +E A ++FDEM V R ++NTL++ +
Sbjct: 473 EMELNG-CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLC-- 529
Query: 136 GKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
K R+ D Q+M++ + PD +YN L+ + ++ A + M P +
Sbjct: 530 -KSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDI 588
Query: 192 VTFGTLIYGLCLELRVDEALKL----------------------------KEDMMRVY-- 221
VT+ TLI GLC RV A +L + MR++
Sbjct: 589 VTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFRE 648
Query: 222 ----NVKPDAQVFASLIKGLC-AVGELSLALGFKEEMV 254
+ PDA + + +GLC G + A+ F EM+
Sbjct: 649 MLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMI 686
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L ++K ++ Q++ Q+ + + P++ + ++++ + + ++ A + M
Sbjct: 521 YNTLIDGLCKSKRVEDAAQLMDQMIMEG-LRPDKFTYNSLLTHFCKTGDIKKAADIVQTM 579
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI---DRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
+S + ++ TL++ + G++ R+ Q+ ++P A YN ++
Sbjct: 580 TSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHA--YNPVIQALFKRN 637
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMRVYNVKPDAQV 229
R +A ++F EML + P +T+ + GLC + EA+ +M+ N+ P+
Sbjct: 638 RTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNI-PEFSS 696
Query: 230 FASLIKGLCAV 240
F L +GLC +
Sbjct: 697 FVMLAEGLCTL 707
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 15/183 (8%)
Query: 42 QPLKP--FRYN--LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97
+ L+P F YN L H+ K G K ++ Q + + P+ + + +IS
Sbjct: 547 EGLRPDKFTYNSLLTHF----CKTGDIKKAADIVQTMTS----SGCNPDIVTYATLISGL 598
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDA 156
+A ++ A ++ + + T ++N ++ A+ + LF ++++K PDA
Sbjct: 599 CKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDA 658
Query: 157 CSYNILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+Y I+ G C + +A EM++R P +F L GLC L +D+ L
Sbjct: 659 ITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLC-TLSMDDTLVKLV 717
Query: 216 DMM 218
DM+
Sbjct: 718 DMI 720
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 120/257 (46%), Gaps = 11/257 (4%)
Query: 3 KAKPTSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K P +P + S+L RL ALQ F + + + + ++ +DL I
Sbjct: 44 KTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH--------REYVHDASSFDLAIDIA 95
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + V ++H+++ R+ P F V Y A + A+++F M +
Sbjct: 96 ARLHLHPTVWSLIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQD 154
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ SFNT+L+ + ++++ +LF+ + S D +YN++++G + +R +V E
Sbjct: 155 LASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKE 214
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++R + P L T+ T++ G ++ A + +M + + + D + +++ G G
Sbjct: 215 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGFGVAG 273
Query: 242 ELSLALGFKEEMVRNKI 258
E+ A +EM+R +
Sbjct: 274 EIKRARNVFDEMIREGV 290
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ I+ L ++K ++ ++ L+ R + + + +++ + + L+V
Sbjct: 154 DLASFNTILDVLCKSKRVEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKTLEV 211
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + + ++NT+L G+I + F M+K D +Y ++HG V
Sbjct: 212 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 271
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A VFDEM++ + P++ T+ +I LC + V+ A+ + E+M+R +P+
Sbjct: 272 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR-RGYEPNVT 330
Query: 229 VFASLIKGLCAVGELS 244
+ LI+GL GE S
Sbjct: 331 TYNVLIRGLFHAGEFS 346
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 4/192 (2%)
Query: 72 QILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
Q H L H V + F I R L + M S + + K+F +
Sbjct: 69 QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 128
Query: 131 AMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ GK D+ LF M ++ D S+N ++ S+R+E A+++F L+ R
Sbjct: 129 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 187
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
VT+ ++ G CL R + L++ ++M+ + P+ + +++KG G++ A F
Sbjct: 188 DTVTYNVILNGWCLIKRTPKTLEVLKEMVE-RGINPNLTTYNTMLKGFFRAGQIRHAWEF 246
Query: 250 KEEMVRNKIEMD 261
EM + E+D
Sbjct: 247 FLEMKKRDCEID 258
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 75/161 (46%), Gaps = 2/161 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ G A + + ++ + V+P + +I + +E+A+ +
Sbjct: 258 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVM 316
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + V ++N L+ + G+ R +L Q ME + P+ +YN+++
Sbjct: 317 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 376
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
+E A +F++M P L T+ LI G+ + R ++
Sbjct: 377 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSED 417
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I + E ILH++ V P+ + +++ Y + L+ A +
Sbjct: 383 NLFVYNIMINGYCKLGRMVEAHNILHEMT-GVGVRPDTYSYNSLVDGYCKKGLMNKAFET 441
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
++ M T ++N LL + G ID L F +++K ++P+ S + L+ G
Sbjct: 442 YNTMLRNGFAATTLTYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFK 501
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S + E A ++ E L R L TF T+I GLC R+ EA +L D M+ + PD
Sbjct: 502 SGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELV-DKMKQWRCPPDII 560
Query: 229 VFASLIKGLCAVGELSLA 246
+ +L G C +G++ A
Sbjct: 561 TYRTLFSGYCKIGDMDRA 578
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 98/184 (53%), Gaps = 3/184 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I L + ++ + +L LK D V + + ++I + ++ A + D M
Sbjct: 728 WNIVIFGLCKLGRIEDAKNLLADLK-DKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTM 786
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S + + ++N+L+ + G++ R LF+ + K +SP+A +YN L+ +
Sbjct: 787 LSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYI 846
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A+K+ M++ + PT+ T+ LI GLC + ++EA+KL + M+ NV P+ + +
Sbjct: 847 TEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLLDQMIE-NNVDPNYVTYWT 905
Query: 233 LIKG 236
LI+G
Sbjct: 906 LIQG 909
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 134/315 (42%), Gaps = 69/315 (21%)
Query: 1 MNKAKPTSPFRL-ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIIT 59
++ + P +P L A+L R++ D A+ LF+ L PF +LL + ++
Sbjct: 84 LSSSAPLTPALLHAALRRVRLDADAAVHLFR-------------LAPFPPSLLAHAQLLH 130
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY-----------------GRARL 102
L RA+ + + IL L P +F +++ Y A
Sbjct: 131 ILVRARRSADARAILASLLSARPPAPP--LFPHLVEVYKEFSFSAASFDLLLRALANAGQ 188
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDA----- 156
L+ ALQVFDEM + + +++S N++LN + G + +F+ M++ + PD
Sbjct: 189 LDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAGALPDKFTVAI 248
Query: 157 ------------------------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
+Y+ +M+G + DA ++ D + R
Sbjct: 249 MAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRG 308
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P +VT+ L+ G C E ++EA + +++ + + D VF ++I G C +G + A
Sbjct: 309 FSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDA 368
Query: 247 LGFKEEMVRNKIEMD 261
EMV ++++++
Sbjct: 369 ARLLNEMVDSRLQVN 383
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 43/248 (17%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R ++ + I+ +L + + Q++ +P++ + Y + + + HAL
Sbjct: 205 RLSMRSCNSILNRLAQTGDLGATVAVFEQMQR-AGALPDKFTVAIMAKAYCKVKGVVHAL 263
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMH 164
+ +EM+ V+ + +++ ++N G+ + RM D + + SP+ +Y +L+
Sbjct: 264 EFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDARRMLD--SLPGRGFSPNIVTYTLLVK 321
Query: 165 GCVVSR------------------------------------RLEDAWKVFDEMLKRRLQ 188
G + R+EDA ++ +EM+ RLQ
Sbjct: 322 GYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQ 381
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
L + +I G C R+ EA + +M V V+PD + SL+ G C G ++ A
Sbjct: 382 VNLFVYNIMINGYCKLGRMVEAHNILHEMTGV-GVRPDTYSYNSLVDGYCKKGLMNKAFE 440
Query: 249 FKEEMVRN 256
M+RN
Sbjct: 441 TYNTMLRN 448
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N ++ +I L + + E ++++ ++K R P+ I + + S Y + ++ A ++
Sbjct: 523 NTTTFNTVINGLCKIERMPEAEELVDKMKQ-WRCPPDIITYRTLFSGYCKIGDMDRASRI 581
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
+E+ + T++ FN+L+ + ++ D LF++ + +SP+ +Y L+ G
Sbjct: 582 LNELENLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCK 641
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
L A+ ++ EM+++ L P L +L+ + + DEA
Sbjct: 642 EGDLHTAYNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEA 683
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 83/182 (45%), Gaps = 12/182 (6%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P EI ++ + ++ E AL ++ E + + + +FNT++N + KI+RM
Sbjct: 485 IAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLC---KIERMP 541
Query: 143 DLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+ ++++K PD +Y L G ++ A ++ +E+ PT+ F +LI
Sbjct: 542 EAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLI 601
Query: 199 YGLCLELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
G + K+ + + + N + P+ + +LI G C G+L A EM+
Sbjct: 602 TG---HFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEK 658
Query: 257 KI 258
+
Sbjct: 659 GL 660
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+NI++ G R+EDA + ++ + T+ +LI+G VD A L++ M+
Sbjct: 728 WNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTML 787
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
V + P+ + SLI GLC GELS A+ +++ I +A
Sbjct: 788 SV-GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNA 830
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
F VI+ + + A ++ D+M + + ++ TL + G +DR + + +E
Sbjct: 527 FNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELE 586
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
+P +N L+ G ++++ + EM R L P V +G LI G C E +
Sbjct: 587 NLGFAPTIEFFNSLITGHFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLH 646
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIK 235
A L +M+ + P+ + +SL+
Sbjct: 647 TAYNLYLEMIE-KGLVPNLFICSSLVS 672
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+ +I L + +EVQ++L +++ D + P++ + +I Y R + A ++
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEME-DVGMRPDKYSYNTLIDGYCREGSMRKAFEM 416
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
M + T ++NTLL + ID L F ++++ V+P+ S + L+ G
Sbjct: 417 CRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFK 476
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + E A ++ E L R L ++TF T+I GLC R+ EA +L D M+ PD+
Sbjct: 477 AGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELL-DRMKELRCPPDSL 535
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +L G C +G+L A +M
Sbjct: 536 TYRTLFDGYCKLGQLGTATHLMNKM 560
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 112/219 (51%), Gaps = 3/219 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ K N++ Y L++ + +E ++++ ++K +V +E+ + +I+ Y +
Sbjct: 277 ESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQ 336
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
++ A +V +EM + + +NT++N + G+++ + + Q ME + PD S
Sbjct: 337 RGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYS 396
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + A+++ M++ L T +T+ TL+ G C +D+AL+L M+
Sbjct: 397 YNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLML 456
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALG-FKEEMVRN 256
+ V P+ ++L+ GL G+ AL +KE + R
Sbjct: 457 K-RGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARG 494
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGC 166
V D ++ N +N ++ + G+I LF+ + K PD +Y+ L+HGC
Sbjct: 686 HVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGC 745
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S +++A+ + D ML L P ++T+ +LIYGLC ++ A+ L + ++ + P+
Sbjct: 746 AASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLF-NKLQSKGISPN 804
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +LI C G+ + A K++MV
Sbjct: 805 GITYNTLIDEYCKEGKTTEAFKLKQKMV 832
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 64/309 (20%)
Query: 3 KAKPTSPFRL-ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
+ P +P L A+L R++ DP AL LF+ L P R +L+ + ++ L
Sbjct: 64 SSSPLTPALLQAALRRVRLDPDAALHLFR-------------LAPSRPSLVSHAQLLHIL 110
Query: 62 GRAKMFDEVQQILHQLK-HDTRVVPE------EIIFCNVISF------YGRARLLEHALQ 108
RA+ F + + +L L H + P + F + +SF + A L AL
Sbjct: 111 ARARRFHDARALLSSLPPHAEPLFPHLAEVYRDFTF-SAVSFDLLLRAHADAGQLSSALN 169
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------QIMEKYVS 153
VFD M + +++S N LLN ++ G ++ IM K
Sbjct: 170 VFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYC 229
Query: 154 PDA---------------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
D +Y+ +M EDA ++ + + ++ L P +V
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVV 289
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ L+ G C + R++EA ++ ++M ++ D + +I G C G + A + E
Sbjct: 290 TYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNE 349
Query: 253 MVRNKIEMD 261
M I ++
Sbjct: 350 MRDAGIHVN 358
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P N++ +++II L ++ + + + L+ + R +P+ + ++I + ++
Sbjct: 696 PHSANVM-WNVIIFGLCKSGRIADAKSLFESLR-NKRFLPDNFTYSSLIHGCAASGSIDE 753
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM- 163
A + D M S + + ++N+L+ + GK+ R +LF ++ K +SP+ +YN L+
Sbjct: 754 AFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813
Query: 164 ---------------HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
V +E+A K+ D+M++ + P +T+ TLI+G ++
Sbjct: 814 EYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNME 873
Query: 209 EALKLKEDM 217
E KL ++M
Sbjct: 874 EISKLYDEM 882
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ + V+ Y E A ++ + + + V ++ L+ G+++ + +
Sbjct: 254 VAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKE 313
Query: 148 MEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M++ + D +Y ++++G R++DA +V +EM + L + T+I GLC
Sbjct: 314 MKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLG 373
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
R++E K+ ++M V ++PD + +LI G C G + A MVRN +
Sbjct: 374 RMEEVQKVLQEMEDV-GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGL 425
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P EI ++ +A E AL ++ E + + + V +FNT++N + G++
Sbjct: 460 VAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAE 519
Query: 143 DLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L M E PD+ +Y L G +L A + ++M P++ F + I G
Sbjct: 520 ELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGH 579
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + + + +M + P+ + +LI G C G L A EMV N +
Sbjct: 580 FIAKQWHKVNDIHSEM-SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGM 635
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
I F VI+ + + A ++ D M ++ TL + G++ T L
Sbjct: 500 ITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNK 559
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
ME +P +N + G ++++ + EM R L P LVT+G LI G C E
Sbjct: 560 MEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGN 619
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ EA L +M+ + P+ + ++L+
Sbjct: 620 LHEACNLYFEMVN-NGMNPNVFICSALMS 647
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I L + E +++L ++K + R P+ + + + Y + L A +
Sbjct: 498 NVITFNTVINGLCKIGRMAEAEELLDRMK-ELRCPPDSLTYRTLFDGYCKLGQLGTATHL 556
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
++M +V+ FN+ + + ++ D+ M + +SP+ +Y L+ G
Sbjct: 557 MNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
L +A ++ EM+ + P + L+ E +VDEA
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEA 658
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 38/283 (13%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPK---------------------LALQLFKNPNPNPNNT 39
+ K KP PF L ++ LQ + K LAL FK+ N N+
Sbjct: 11 LKKQKPLVPFVLNTINPLQNEQKDLNLLKESEVLNKLKNEPNILLALHFFKSI-ANSNS- 68
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
F++ L Y +I +LG + D +Q +L +K + + E +F VI+ Y R
Sbjct: 69 -------FKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEG-ISCNEDLFVIVINAYRR 120
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACS 158
A L E AL+ F + F + +VK +N +L+A+L+ K + ++ M++ + + +
Sbjct: 121 AGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYT 180
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+ + R++ A K+ EM + P V++ T++ +C +V+EA +L M
Sbjct: 181 YNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELS---M 237
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
R+ + P V+ +LI G C ++ EM I+ D
Sbjct: 238 RIKSFVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPD 277
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 107/206 (51%), Gaps = 8/206 (3%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y +++ + R +E +++ ++K VP ++ +I+ + R +E ++F+
Sbjct: 214 VSYTTVVSSMCRLGKVEEARELSMRIK---SFVP---VYNALINGFCREHKMEEVFELFN 267
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
EM+ + V +++T++N + G ++ + L ++ + SP+ ++ LM G +
Sbjct: 268 EMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGG 327
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
RL +A +++ M++ +P V + TLI+GLC ++ EA+ + + M R V P+ +
Sbjct: 328 RLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMER-NGVFPNETTY 386
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRN 256
++LI G G+L A +M+ N
Sbjct: 387 STLIDGFAKAGDLVGASEIWNKMITN 412
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 96/203 (47%), Gaps = 3/203 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I +A +I +++ + +P +++ ++ R + HAL + + M
Sbjct: 386 YSTLIDGFAKAGDLVGASEIWNKMITNG-CLPNVVVYTCMVDVLCRNSMFNHALHLIENM 444
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
++ N +FNT + + GK + + M +Y +P+ +YN ++ G ++R
Sbjct: 445 ANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRT 504
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ E+ + ++ LVT+ T++ G C AL++ ++ V KPD+ + +
Sbjct: 505 REALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLL-VGGTKPDSITYNT 563
Query: 233 LIKGLCAVGELSLALGFKEEMVR 255
+I C GE+ A+ + + +
Sbjct: 564 VIYAYCKQGEVKTAIQLVDRLTK 586
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 3/160 (1%)
Query: 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VS 153
++ RL E AL +++ M + ++NTL++ + + GK+ + Q ME+ V
Sbjct: 322 GYFMGGRLCE-ALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVF 380
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ +Y+ L+ G + L A +++++M+ P +V + ++ LC + AL L
Sbjct: 381 PNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHL 440
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E+M N P+ F + IKGLC G+ A+ +M
Sbjct: 441 IENMANG-NCPPNTITFNTFIKGLCCSGKTEWAMKVLNQM 479
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 88/190 (46%), Gaps = 2/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y ++ L R MF+ ++ + + P I F I + E A++V
Sbjct: 417 NVVVYTCMVDVLCRNSMFNHALHLIENMA-NGNCPPNTITFNTFIKGLCCSGKTEWAMKV 475
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
++M + V ++N +L+ + + + + + +I E + + +YN ++ G
Sbjct: 476 LNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCH 535
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + A ++ ++L +P +T+ T+IY C + V A++L + + + PD
Sbjct: 536 AGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVF 595
Query: 229 VFASLIKGLC 238
+ SL+ G+C
Sbjct: 596 TYTSLLWGVC 605
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 90/190 (47%), Gaps = 4/190 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++ I L + + ++L+Q++ P + V+ A+ ALQ+
Sbjct: 452 NTITFNTFIKGLCCSGKTEWAMKVLNQMRQ-YGCAPNVTTYNEVLDGLFNAKRTREALQI 510
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
E+ ++ + ++NT+L+ G + +++ PD+ +YN +++
Sbjct: 511 VGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCK 570
Query: 169 SRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++ A ++ D + K+ P + T+ +L++G+C + VDEA+ + D M + P+
Sbjct: 571 QGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAV-VHLDKMINEGICPNR 629
Query: 228 QVFASLIKGL 237
+ +L++GL
Sbjct: 630 ATWNALVRGL 639
>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 706
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 4/202 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P N + Y ++ L R +++V Q++ ++ + P+E++F +I + L++
Sbjct: 389 PCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRND-CAPDEMVFGLIIDCLCQRGLVDC 447
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
L+V E+ ++ V + +LLN G++D LF+ M P+ +YN ++ G
Sbjct: 448 GLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMT--CKPNTVTYNYVLMG 505
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
EDA K+ DEM+ + P +TF LI LC + V+ A+ + E M++Y P
Sbjct: 506 LCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVFEK-MQMYGCTP 564
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ ++++L GL G + AL
Sbjct: 565 NVIIYSTLNNGLSEKGCVDNAL 586
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 99/202 (49%), Gaps = 4/202 (1%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P N Y+ ++ L AK + + ++++ ++ + P+++ F +I + ++ L++
Sbjct: 185 PPAPNSYAYNTLLKGLCSAKQWGDAEELVEEMTRNDSP-PDDLTFGMLIHSFCQSGLVDR 243
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165
A+ + D MS +N +++ G++ LF M PD SYN ++ G
Sbjct: 244 AMGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMP--CKPDIFSYNAVLKG 301
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ R EDA ++ EM+++ P VTF T+I LC + VD AL++ D M Y KP
Sbjct: 302 LCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVV-DQMPKYGRKP 360
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
D +++LI G + AL
Sbjct: 361 DNFTYSALINAFSEQGCVEDAL 382
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
+L+LFK+ PN + Y+ ++ L + +++++ +++ ++
Sbjct: 483 SLKLFKSMTCKPNT-------------VTYNYVLMGLCKVELWEDAGKLIDEMVGQ-ECP 528
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P E+ F +IS + L+E A+ VF++M + V ++TL N + G +D L
Sbjct: 529 PNEMTFSILISSLCQKGLVECAIDVFEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNALKL 588
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
M D Y+ + G + EDA ++ EM ++ P VTF +I LC +
Sbjct: 589 LNNMS--CKADTICYSSALKGLCRAELWEDAGELIVEMFRKDCPPDEVTFSIIITNLCQQ 646
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
V+ A ++ D+M Y P+ +++SLI G G L AL M
Sbjct: 647 GFVEYATEVS-DLMLKYECTPNIVIYSSLINGFSEHGHLEDALKLLRSM 694
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
L+I KL A + + +L + + + +++ Y RA L A ++ +++
Sbjct: 98 LLIKKLCAAGRLADAEGVLRASE-----AADAVDHNTLVAGYCRAGRLADAERMLRSLAA 152
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
V ++NTL+ G+++ L M +P++ +YN L+ G +++ DA
Sbjct: 153 SGAADVV-TYNTLIAGYCRGGRLEDARLLVASMPP--APNSYAYNTLLKGLCSAKQWGDA 209
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++ +EM + P +TFG LI+ C VD A+ + + M + P A V+ +I
Sbjct: 210 EELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRAMGILDRMSKC-GCTPGAIVYNEIIS 268
Query: 236 GLCAVGELSLAL 247
+G + AL
Sbjct: 269 CFAELGRVKEAL 280
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
L+ ALQ+ MS V L+ + G R+ D ++ + DA +N L
Sbjct: 77 LDAALQLVGSMSE---PPAVVPCTLLIKKLCAAG---RLADAEGVLRASEAADAVDHNTL 130
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + RL DA ++ L +VT+ TLI G C R+++A L M
Sbjct: 131 VAGYCRAGRLADAERML-RSLAASGAADVVTYNTLIAGYCRGGRLEDARLLVASMPPA-- 187
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
P++ + +L+KGLC+ + A EEM RN
Sbjct: 188 --PNSYAYNTLLKGLCSAKQWGDAEELVEEMTRN 219
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 5/213 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHA 106
+ ++ Y II L R D + ++ +T+ + ++ N ++ +A
Sbjct: 215 KADVFTYSTIIDSLCRDGCIDAAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGKWNDG 272
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG 165
+ +M S + V +FN LL+ + GK+ +L+ +++ + +SP+ +YN LM G
Sbjct: 273 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDG 332
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ RL +A + D M++ + P +VTF +LI G C+ RVD+ +K+ ++ + +
Sbjct: 333 YCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISK-RGLVA 391
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+A ++ L++G C G++ LA +EMV + +
Sbjct: 392 NAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 424
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 103/192 (53%), Gaps = 3/192 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ + R+ +L +++ + V + + +I R ++ A+ +
Sbjct: 182 DVVTYNSIVNGICRSGDTSLALDLLRKME-ERNVKADVFTYSTIIDSLCRDGCIDAAISL 240
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ +V ++N+L+ + GK + L + M + + P+ ++N+L+ V
Sbjct: 241 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 300
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L++A +++ EM+ R + P ++T+ TL+ G C++ R+ EA + + M+R PD
Sbjct: 301 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR-NKCSPDIV 359
Query: 229 VFASLIKGLCAV 240
F SLIKG C V
Sbjct: 360 TFTSLIKGYCMV 371
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 98/198 (49%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ E +L + + + P+ + F ++I Y + ++ ++V
Sbjct: 322 NIITYNTLMDGYCMQNRLSEANNMLDLMVRN-KCSPDIVTFTSLIKGYCMVKRVDDGMKV 380
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +S + +++ L+ GKI +LFQ M + V PD +Y IL+ G
Sbjct: 381 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 440
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +LE A ++F+++ K ++ +V + T+I G+C +V++A L + VKP+
Sbjct: 441 NGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS-LPCKGVKPNVM 499
Query: 229 VFASLIKGLCAVGELSLA 246
+ +I GLC G LS A
Sbjct: 500 TYTVMISGLCKKGSLSEA 517
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + ++++ R+ AL + +M NV+ V +++T+++++ G ID L
Sbjct: 181 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 240
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ ME K + +YN L+ G + + D + +M+ R + P ++TF L+
Sbjct: 241 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 300
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
E ++ EA +L ++M+ + P+ + +L+ G C LS A + MVRNK D
Sbjct: 301 EGKLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F S R + L ++ + + + N ++N C K
Sbjct: 72 SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCF 131
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD ++N L+ G + ++ +A + D M++ QP +VT+ +++
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 191
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
G+C AL L M NVK D ++++I LC G + A+ +EM
Sbjct: 192 GICRSGDTSLALDLLRKMEE-RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM 244
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+V + + ++ + ++ ++ A ++F EM S V V ++ LL+ + GK+++
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++F+ ++K + Y ++ G ++EDAW +F + + ++P ++T+ +I GL
Sbjct: 449 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 508
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
C + + EA L M N P+ + +LI+ G+L+ + EEM D
Sbjct: 509 CKKGSLSEANILLRKMEEDGNA-PNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 567
Query: 262 A 262
A
Sbjct: 568 A 568
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 110/240 (45%), Gaps = 42/240 (17%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + +++ Y+ ++ L +A +++ +L + +VP I F ++ + + L+
Sbjct: 247 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDVFVKEGKLQ 305
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A +++ EM + + + ++NTL++ ++ ++ +M SPD ++ L+
Sbjct: 306 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 365
Query: 164 HGCVVSRRLEDAWKVF-----------------------------------DEMLKRRLQ 188
G + +R++D KVF EM+ +
Sbjct: 366 KGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVL 425
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV--FASLIKGLCAVGELSLA 246
P ++T+G L+ GLC ++++AL++ ED+ + K D + + ++I+G+C G++ A
Sbjct: 426 PDVMTYGILLDGLCDNGKLEKALEIFEDLQK---SKMDLGIVMYTTIIEGMCKGGKVEDA 482
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A+ V +++K +P TF TLI GL LE +V EA+ L + M+ +PD + S++
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVE-NGCQPDVVTYNSIV 190
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
G+C G+ SLAL +M ++ D
Sbjct: 191 NGICRSGDTSLALDLLRKMEERNVKAD 217
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ A+ + D M Q V ++N+++N + G DL + ME + V D +Y+
Sbjct: 164 VSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYST 223
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ ++ A +F EM + ++ ++VT+ +L+ GLC + ++ L +DM+
Sbjct: 224 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-R 282
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ P+ F L+ G+L A +EM+ I
Sbjct: 283 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGI 319
>gi|225430810|ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680,
mitochondrial-like [Vitis vinifera]
Length = 414
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEV 70
R S+LR + DP AL+++ + + + + PL RY DL + +L +++ F ++
Sbjct: 39 RAKSILRSEFDPDRALEIYSSVSKHYTS----PLAS-RYA---QDLTVKRLAKSRRFADI 90
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
+ ++ K+D ++ +E +I YG A + +HAL+ F++M R+ SFN LL+
Sbjct: 91 ETLIESHKNDPKIT-QEPYLSTLIRSYGIAGMFQHALRTFNQMEELGTPRSSISFNALLS 149
Query: 131 AMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188
A D++ F +I +Y V PD SY IL+ S + A + EM ++ ++
Sbjct: 150 ACNQSKLFDQVPKFFEEIPRRYGVLPDKISYGILVKSYCESGLSDKAISMLKEMEEKGVE 209
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------VYNVK 224
T VTF T++ L + + D A K+ +M + YNVK
Sbjct: 210 ITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVK 252
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ ++ +++ ++K+FD+V + ++ V+P++I + ++ Y + L + A+ +
Sbjct: 142 ISFNALLSACNQSKLFDQVPKFFEEIPRRYGVLPDKISYGILVKSYCESGLSDKAISMLK 201
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVV 168
EM V+ T +F T+L+A+ G+ DR ++ M K D +YN+ HG
Sbjct: 202 EMEEKGVEITAVTFTTILDALYKQGQSDRAEKVWHEMAKKGCLDVGAYNVKIMFAHGG-- 259
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
E+ + DEM L+P +++ L+ C VDEA K+ ++ P+A
Sbjct: 260 --DPENVKALIDEMSNAGLKPDTISYNYLMTSYCKSGMVDEAKKVYAELEET-GCHPNAA 316
Query: 229 VFASLIKGLCAVGELSLALG-FKEEMVRNKI 258
F +LI LC G+ FK+ R KI
Sbjct: 317 TFRTLIYYLCRSGDFETGYKVFKQSAFRRKI 347
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ I+ L + D +++ H++ + ++ NV + E+ + DEM
Sbjct: 215 FTTILDALYKQGQSDRAEKVWHEMAKKGCL---DVGAYNVKIMFAHGGDPENVKALIDEM 271
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
S+ ++ S+N L+ + G +D ++ ++ E P+A ++ L++ S
Sbjct: 272 SNAGLKPDTISYNYLMTSYCKSGMVDEAKKVYAELEETGCHPNAATFRTLIYYLCRSGDF 331
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
E +KVF + RR P T L+ GL + + EA L
Sbjct: 332 ETGYKVFKQSAFRRKIPDFGTLRHLVEGLVQKKKTKEAKGL 372
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++T L +MF+ + +L +++ V P+ I F +I+ + A+ + A+
Sbjct: 101 SLVTYTILLTALTNQRMFESIPSLLAEVEL-AGVRPDSIFFNALINAFVEAKRMGEAINT 159
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F +M T +FNTL+ GK + +F +M E V P+ +YNIL+
Sbjct: 160 FWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWC 219
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKPD 226
R LE+AW V +M +P +VT+ T+ DE + +E ++ + V+
Sbjct: 220 DHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYA---NNDETWRAEELIVEIQTRVRTS 276
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +I G C G L AL ++M
Sbjct: 277 ERTWGIIIGGYCREGRLEEALRCVQQM 303
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +II R +E + + Q+K D VP +IF ++ + A + ++ M
Sbjct: 280 WGIIIGGYCREGRLEEALRCVQQMK-DAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLM 338
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
F ++ + +++ LN + G + + +F +++E + PD Y+IL G V +++
Sbjct: 339 EKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQP 398
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + +M L P +VTF T+I G C ++ A+++ + M + V P+ + F +
Sbjct: 399 EKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKS-GVYPNLRTFET 457
Query: 233 LIKG 236
I G
Sbjct: 458 PIWG 461
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 91/208 (43%), Gaps = 1/208 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I G +E Q++ + + V P + ++ + R LE A V +M
Sbjct: 175 FNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKM 234
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + + ++NT+ +A + R +L ++ V ++ I++ G RLE
Sbjct: 235 QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLE 294
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + +M P +V F TL+ G L+ A+ +M + +KPD ++
Sbjct: 295 EALRCVQQMKDAGSVPNVVIFNTLLKGF-LDANDMAAVNKILGLMEKFGIKPDIVTYSHQ 353
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++G ++ + ++M+ IE D
Sbjct: 354 LNTFSSLGHMAKCMHVFDKMIEAGIEPD 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A VF + + ++ ++ LL A+ + + L +E V PD+ +N L+
Sbjct: 85 QAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALI 144
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YN 222
+ V ++R+ +A F +M PT TF TLI G + + +E+ ++ DMM V +
Sbjct: 145 NAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVF-DMMGVEGS 203
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ + L+K C L A G +M E D
Sbjct: 204 VRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPD 242
>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 507
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 14/243 (5%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+A L +L LAL F+ A+ + F +N + +I LG+ + F +
Sbjct: 90 VAVLNKLSNAGILALSFFR---------WAEKQQGFNHNTEIFHALIEALGKIRQFKMIW 140
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++ ++K R + F + Y RA++++ AL+ F+ M + ++ + FN L++
Sbjct: 141 NLVDEMKQ--RKLLNGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISDFNKLIDV 198
Query: 132 MLTCG-KIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ +++ +LF M ++ + P+ SY IL+ G + L +V EM QP
Sbjct: 199 LCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREMKDDGFQP 258
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
+VT+G +I C + DEA+ + DM+ NV P ++ + I GL + A F
Sbjct: 259 DVVTYGIIINAYCKAKKYDEAIGIYHDMLS-KNVNPSPHIYCTFITGLGNGSRMDEAFEF 317
Query: 250 KEE 252
E+
Sbjct: 318 FEK 320
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 19/228 (8%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87
L KN NP+P+ Y IT LG DE + + K + PE
Sbjct: 287 LSKNVNPSPHI---------------YCTFITGLGNGSRMDEAFEFFEKSK-ASGFPPEA 330
Query: 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ V+S Y + ++ A ++ EM + ++++ +L ++ G+ +FQ
Sbjct: 331 PTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQR 390
Query: 148 M--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M E P +Y I++ +L+ A V++EM + + P + F TLI LC E
Sbjct: 391 MSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHEN 450
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++D+A + + M+ V ++P A +F++ + L A G + + F +++
Sbjct: 451 KLDDACRYFQQMLDV-GIRPTANMFSAFKRALMAAGMENTVIHFAKKV 497
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 99/208 (47%), Gaps = 8/208 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y ++I + + +V ++ ++K D P+ + + +I+ Y +A+ + A+ +
Sbjct: 224 NLKSYTILIEGWSQQQNLLKVDEVCREMKDDG-FQPDVVTYGIIINAYCKAKKYDEAIGI 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
+ +M S NV + + T + + G RM + F+ EK + P+A +YN ++
Sbjct: 283 YHDMLSKNVNPSPHIYCTFITGL---GNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSA 339
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
S R++DA+++ EM + + P T+ ++ L R EA + + M +P
Sbjct: 340 YCWSMRIDDAYRIVGEMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEP 399
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+A +++ C +L +A+ EM
Sbjct: 400 SVSTYAIMVRMFCNENQLDMAMVVWNEM 427
>gi|255564122|ref|XP_002523058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537620|gb|EEF39243.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 286
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 126/253 (49%), Gaps = 16/253 (6%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ ++R +KD + A +F ++ A+ F+++ + II+KL
Sbjct: 10 SKKITPSQVEQVIRAEKDIEKAKLVF-------DSATAEYSHGFKHDNSTFSAIISKLLS 62
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F V+ +L+++K + + E+I F ++ YGR +++VF +M F + T K
Sbjct: 63 ANQFTLVEDMLNRMKQEKCNITEDI-FLSICRAYGRVHRPLDSIRVFHKMKDFECKATQK 121
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
S+ T+ ++ ++ +Q M E +S S N+L+ C S ++ A+++F+E
Sbjct: 122 SYITVFAILVEENRLKDAMRFYQHMREMGISASVVSLNVLIKALCKNSSTIDAAFRIFNE 181
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M R P T+GTLI GLC ++ EA +L + M P ++ LI G
Sbjct: 182 MPNRGCNPDSYTYGTLINGLCRFGKIWEAKELFIE-METKCCSPSVVTYSCLIH-----G 235
Query: 242 ELSLALGFKEEMV 254
+L A+ +EMV
Sbjct: 236 DLHKAIRLVDEMV 248
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A ++F+EM + ++ TL+N + GKI +LF ME CS +++
Sbjct: 172 IDAAFRIFNEMPNRGCNPDSYTYGTLINGLCRFGKIWEAKELFIEME----TKCCSPSVV 227
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+ C++ L A ++ DEM+ P +T+ ++ G +V EA +L
Sbjct: 228 TYSCLIHGDLHKAIRLVDEMVLDGCVPDQLTWTVVLCGFLDRRKVWEASEL 278
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 114/218 (52%), Gaps = 3/218 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K + +++ Y +I L +D+ ++L ++ ++P+ + F +I + + L
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 360
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A ++++EM + + ++N+L++ + +F +M K PD +Y+IL
Sbjct: 361 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ ++R++D ++F E+ + L P +T+ TL+ G C +++ A +L ++M+
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RG 479
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
V P + L+ GLC GEL+ AL E+M ++++ +
Sbjct: 480 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 517
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + ++I + + L A Q+FD M S + + +++ L+N+ ++D
Sbjct: 375 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 434
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +I K + P+ +YN L+ G S +L A ++F EM+ R + P++VT+G L+ GL
Sbjct: 435 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 494
Query: 202 CLELRVDEALKLKEDMMR--------VYN--------------------------VKPDA 227
C +++AL++ E M + +YN VKPD
Sbjct: 495 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 554
Query: 228 QVFASLIKGLCAVGELSLA 246
+ +I GLC G LS A
Sbjct: 555 VTYNVMIGGLCKKGSLSEA 573
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 108/215 (50%), Gaps = 3/215 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + +++ Y ++I L + FD+ + ++++ + + + + ++I +
Sbjct: 268 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG-IKADVVTYSSLIGGLCNDGKWD 326
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
++ EM N+ V +F+ L++ + GK+ +L+ +++ + ++PD +YN L+
Sbjct: 327 DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 386
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L +A ++FD M+ + +P +VT+ LI C RVD+ ++L + + +
Sbjct: 387 DGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE-ISSKGL 445
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+ + +L+ G C G+L+ A +EMV +
Sbjct: 446 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + V++ ++ AL +F +M N++ +V ++ +++++ G D L
Sbjct: 237 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 296
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME K + D +Y+ L+ G + +D K+ EM+ R + P +VTF LI
Sbjct: 297 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 356
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA +L +M+ + PD + SLI G C
Sbjct: 357 EGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFC 390
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +++ L++G + R+ +A + D M++ + +P LVT TLI GLCL+ RV EAL L
Sbjct: 167 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 226
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ M+ Y +PD + ++ LC G +LAL +M I+
Sbjct: 227 IDRMVE-YGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 271
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-K 150
N + GR + AL + D M + Q ++ +LN + G DLF+ ME +
Sbjct: 212 NGLCLKGR---VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 268
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ Y+I++ +DA +F+EM + ++ +VT+ +LI GLC + + D+
Sbjct: 269 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 328
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K+ +M+ N+ PD F++LI G+L A EM+ I D
Sbjct: 329 AKMLREMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 379
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ A+ +F+ M T FN L +A+ + D + + ME + D + I
Sbjct: 80 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 139
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++L A+ V K +P +TF TL+ G CLE RV EA+ L + M+ +
Sbjct: 140 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 199
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD ++LI GLC G +S AL + MV + D
Sbjct: 200 Q-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 238
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
N + Y+ ++ ++ + +++ ++ +R VP ++ ++ L AL+
Sbjct: 448 NTITYNTLVLGFCQSGKLNAAKELFQEMV--SRGVPPSVVTYGILLDGLCDNGELNKALE 505
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+F++M + + +N +++ M K+D LF + +K V PD +YN+++ G
Sbjct: 506 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 565
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L +A +F +M + P T+ LI
Sbjct: 566 KKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + P+ + + +IS YG+AR E AL VF+EM ++ T K++N
Sbjct: 294 YKEVSKIYDQMQR-AGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYN 352
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M++ SPD CSY ++ V + +E A F + +
Sbjct: 353 ILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQD 412
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+P +VT+GTLI G +++ +K E+ M+V ++ + + +++
Sbjct: 413 GFRPNVVTYGTLIKGYAKINNLEKMIKRYEE-MKVNGIRVNQTILTTIM 460
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV--PEEIIFCNVISFYGRARLLEHALQV 109
L Y +++ F E +++ L + + V P++ +F +I + +A E A +V
Sbjct: 209 LTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKV 268
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F EM++ V +T ++N+L++ ++ ++ D Q+ + PD SY +L+ +
Sbjct: 269 FAEMAARGVPQTTVTYNSLMSFETNYKEVSKIYD--QMQRAGLQPDVVSYALLISAYGKA 326
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR E+A VF+EML ++PT + L+ + V++A K+ M+ PD
Sbjct: 327 RREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQA-KIVFKSMKRDRCSPDICS 385
Query: 230 FASLIKGLCAVGELSLALGF 249
+ +++ ++ A F
Sbjct: 386 YTTMLSAYVNASDMEGAENF 405
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 55 DLIITKLGRAKM---FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
DL++ L R K ++ V +IL L+ + E+ F +I+ YG+ A +V +
Sbjct: 103 DLVLGTLVRFKQLKKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLN 162
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSR 170
M+ V S L+ A + + +F+ M+ P A +Y I++ V
Sbjct: 163 LMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGS 222
Query: 171 RLEDAWKVFDEMLKRR---LQPTLVTFGTLIY 199
+ ++A ++FD +L + L+P F +IY
Sbjct: 223 KFKEAEELFDSLLNKEKPVLKPDQKMFHMIIY 254
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++T L +MF+ + +L +++ V P+ I F +I+ + A+ + A+
Sbjct: 101 SLVTYTILLTALTNQRMFESIPSLLAEVEL-AGVRPDSIFFNALINAFVEAKRMGEAINT 159
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F +M T +FNTL+ GK + +F +M E V P+ +YNIL+
Sbjct: 160 FWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWC 219
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKPD 226
R LE+AW V +M +P +VT+ T+ DE + +E ++ + V+
Sbjct: 220 DHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYA---NNDETWRAEELIVEIQTRVRTS 276
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +I G C G L AL ++M
Sbjct: 277 ERTWGIIIGGYCREGRLEEALRCVQQM 303
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +II R +E + + Q+K D VP +IF ++ + A + ++ M
Sbjct: 280 WGIIIGGYCREGRLEEALRCVQQMK-DAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLM 338
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
F ++ + +++ LN + G + + +F +++E + PD Y+IL G V +++
Sbjct: 339 KKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQP 398
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + +M L P +VTF T+I G C ++ A+++ + M + V P+ + F +
Sbjct: 399 EKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKS-GVYPNLRTFET 457
Query: 233 LIKG 236
LI G
Sbjct: 458 LIWG 461
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I G +E Q++ + + V P + ++ + R LE A V +M
Sbjct: 175 FNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKM 234
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + + ++NT+ +A + R +L ++ V ++ I++ G RLE
Sbjct: 235 QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLE 294
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + +M P +V F TL+ G L+ A+ +M+ + +KPD ++
Sbjct: 295 EALRCVQQMKDAGSVPNVVIFNTLLKGF-LDANDMAAVNKILGLMKKFGIKPDIVTYSHQ 353
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++G ++ + ++M+ IE D
Sbjct: 354 LNTFSSLGHMAKCMHVFDKMIEAGIEPD 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A VF + + ++ ++ LL A+ + + L +E V PD+ +N L+
Sbjct: 85 QAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALI 144
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YN 222
+ V ++R+ +A F +M PT TF TLI G + + +E+ ++ DMM V +
Sbjct: 145 NAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVF-DMMGVEGS 203
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ + L+K C L A G +M E D
Sbjct: 204 VRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPD 242
>gi|62320586|dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana]
Length = 778
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 7/223 (3%)
Query: 26 LQLFKNPNPNPNNTEAQP-LKPFRY---NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
+ +FK PN + +P L P + + ++ L+ + ++ D + + + D
Sbjct: 386 VDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDD 445
Query: 82 RVV-PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
R P+E+ + V+S + A L++ A QV EM+ V ++N LL +IDR
Sbjct: 446 RNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDR 505
Query: 141 MTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DL + M + + PD SYNI++ GC++ A F+EM R + PT +++ TL+
Sbjct: 506 AEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLM 565
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ + A ++ ++MM VK D + L++G C +G
Sbjct: 566 KAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLG 608
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ + D + +L ++ D + P+ + + +I AL
Sbjct: 486 NRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAF 545
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+EM + + T S+ TL+ A G+ +F M + V D ++N+L+ G
Sbjct: 546 FNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYC 605
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+EDA +V M + P + T+G+L G+ + +AL L +++ VK
Sbjct: 606 RLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVK 662
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +LNA G D+ LF+ M ++ PD +YN+++ C R E V + +
Sbjct: 238 AFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERI 297
Query: 183 LKRRLQPTLVTFGTLI 198
+ + ++ + T +L+
Sbjct: 298 IDKGIKVCMTTMHSLV 313
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 112/214 (52%), Gaps = 5/214 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + ++V L Q++ + V P+ + + +IS Y L+E A ++
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY-NILMHGCV 167
+ M V ++NT++N + GK +R ++F +++ +SPD+ +Y ++LM C
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+E KVF +M R + P LV F +++ +D+AL + + ++ + PD
Sbjct: 353 KGDVVETE-KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDN 410
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI+G C G +S+A+ + EM++ MD
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ +++ + + P+ +I + + L++A+++
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M ++ V ++NTLL+ G ID +++ M K + P SY+IL++
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A++V+DEM+ + ++PT++ ++I G C + E M+ V PD
Sbjct: 563 KGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCI 621
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI G +S A G ++M
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKM 646
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 5/192 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+DL+I +A+ E + L+ V I CN +I R +E A V+ E
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTV--SIDACNALIGSLVRIGWVELAWGVYQE 225
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRM-TDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+S V V + N ++NA+ GK++++ T L Q+ EK V PD +YN L+
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E+A+++ + M + P + T+ T+I GLC + + A ++ +M+R + PD+ +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR-SGLSPDSTTYR 344
Query: 232 SLIKGLCAVGEL 243
SL+ C G++
Sbjct: 345 SLLMEACKKGDV 356
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 11/223 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R +++ Y+ ++ G+ D ++I + ++P I + +++ L
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSILVNALCSKGHLA 567
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYN 160
A +V+DEM S N++ TV N+++ G +D +EK +S PD SYN
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN---ASDGESFLEKMISEGFVPDCISYN 624
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
L++G V + A+ + +M + + L P + T+ ++++G C + ++ EA + M+
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMI 684
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + +I G + L+ A +EM++ D
Sbjct: 685 E-RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ ++L A ++F+EM+ + + L++ G + +LFQ M EK + D
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN L+ G ++ A +++ +M+ + + PT +++ L+ LC + + EA ++ ++M
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ N+KP + S+IKG C G S F E+M+
Sbjct: 577 IS-KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 108/211 (51%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ + +++ R+ D+ + +K + ++P+ +I+ +I Y R ++ A+ +
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVK-EAGLIPDNVIYTILIQGYCRKGMISVAMNL 432
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+EM V ++NT+L+ + + LF ++ E+ + PD+ + IL+ G
Sbjct: 433 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCK 492
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L++A ++F +M ++R++ +VT+ TL+ G +D A ++ DM+ + P
Sbjct: 493 LGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS-KEILPTPI 551
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ L+ LC+ G L+ A +EM+ I+
Sbjct: 552 SYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A P K F + Y+ +I L + ++ +++ ++ + + P+ + +++ +
Sbjct: 295 AMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR-SGLSPDSTTYRSLLMEACKK 353
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
+ +VF +M S +V + F+++++ G +D+ F + E + PD Y
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL+ G + A + +EML++ +VT+ T+++GLC + EA KL +M
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD+ LI G C +G L A+ ++M +I +D
Sbjct: 474 -RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP+ + F +++S + R+ L+ AL F+ + + + L+ G I
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L +++++ + D +YN ++HG + L +A K+F+EM +R L P T LI G
Sbjct: 431 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + A++L + M+ ++ D + +L+ G VG++ A +MV +I
Sbjct: 491 CKLGNLQNAMELFQK-MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 107/219 (48%), Gaps = 4/219 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + + + Y +I +AKM + ++ Q+ VV + + ++ +A +
Sbjct: 251 RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVV-STVTYNIILDGLCKAGRVA 309
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
A F M TV +++ L++ + G + +LF+ ++++ P+ SYNI++
Sbjct: 310 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIII 369
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-RVDEALKLKEDMMRVYN 222
G + +L A+ F+++L+RRL P + TF ++GLC L V + ++L E M+
Sbjct: 370 RGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVS-QG 428
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P+ ++ L+ G+C G L +AL EMV + D
Sbjct: 429 TSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPD 467
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 107/218 (49%), Gaps = 6/218 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y++ I L +A+ D+ Q+L ++ + + +P + + ++ +A L+ A+ V
Sbjct: 41 DYVTYNVFIDGLCKAERVDDAFQLLKKMD-EKKCLPTTVTYTALVDGLLKAGRLDEAMAV 99
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
++M T+K++ +++ + G+++ +F ++ PDA Y L+ G
Sbjct: 100 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCK 159
Query: 169 SRRLEDAWKVFDEMLKRRLQ----PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
S + E+A+ ++ E R+ P +VT+ +LI GLC R+ EA ++ +D
Sbjct: 160 SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI 219
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PDA + S+I GLC +G + EM E DA
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDA 257
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 5/202 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
P +++ + ++I L R K DE +L + P+ + + I +A ++
Sbjct: 2 PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVR-AGCEPDYVTYNVFIDGLCKAERVDD 60
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMH 164
A Q+ +M T ++ L++ +L G++D M L Q++EK SP +Y +++
Sbjct: 61 AFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVID 120
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNV 223
G + R+E+A ++F +ML +P + LI GLC + +EA L KE R ++
Sbjct: 121 GLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHA 180
Query: 224 K--PDAQVFASLIKGLCAVGEL 243
PD + SLI GLC G +
Sbjct: 181 TAVPDVVTYTSLIDGLCKAGRI 202
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I RA L A F+++ + V +FN L+ + C ++D ++D
Sbjct: 360 PNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGL--CQRLDTVSDG 417
Query: 145 FQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
++ E VS P+ SY+ILM G + LE A ++F EM+ R + P +V F TLI
Sbjct: 418 VELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRW 477
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
LC+ RVDEAL++ ++ R PDA + SL+ GL
Sbjct: 478 LCIAGRVDEALEVFRELER--RSAPDAWSYWSLLDGL 512
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVF 179
+F ++N + + R+ + F ++E+ V PD +YN+ + G + R++DA+++
Sbjct: 9 AFTVVINGLC---REKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+M +++ PT VT+ L+ GL R+DEA+ + E M+ N P + + +I GL
Sbjct: 66 KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGN-SPTLKTYTVVIDGLSK 124
Query: 240 VGELSLALGFKEEMVRNKIEMDA 262
G + A +M+ N DA
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDA 147
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
SPD ++ ++++G +RL++A+ V + ++ +P VT+ I GLC RVD+A +
Sbjct: 4 SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
L + M P + +L+ GL G L A+ E+MV
Sbjct: 64 LLKKMDE-KKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMV 104
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 94/204 (46%), Gaps = 10/204 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
L Y ++I L +A +E ++I + L + R P+ ++ +I ++ E A
Sbjct: 111 TLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR--PDAFVYTALIKGLCKSGKPEEAYA 168
Query: 109 VFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNIL 162
++ E ++ T V ++ +L++ + G+I +F + +E+ PDA +Y +
Sbjct: 169 LYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSI 228
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G R+E+ + F EM R +P VT+ LI G + +A ++ M++
Sbjct: 229 IDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGT 288
Query: 223 VKPDAQVFASLIKGLCAVGELSLA 246
V + ++ GLC G ++ A
Sbjct: 289 VVSTV-TYNIILDGLCKAGRVAEA 311
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS 158
RA LE AL++F EM S V V FNTL+ + G++D ++F+ +E+ +PDA S
Sbjct: 445 RAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWS 504
Query: 159 YNILMHGCVVSRRLEDA 175
Y L+ G R+E+A
Sbjct: 505 YWSLLDGLSRCERMEEA 521
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L R + + +L ++K + P F ++ L+ AL
Sbjct: 246 NAVTYNILIGGLCRKGQVSKAEGLLERMKR-AHINPTTRTFNMLMDGLCNTGQLDKALSY 304
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+++ + T+ ++N L++ G +++L + ME + +SP +Y ILM+ V
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +E A+++F M + L P T+G LI+GLC++ + EA KL + M+ ++ ++P+
Sbjct: 365 SDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMH-LQPNDV 423
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ ++I G C AL F EEMV+N +
Sbjct: 424 IYNTMINGYCKECNSYKALKFLEEMVKNGV 453
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L D+ L +LK + P + + +IS + + ++ EM
Sbjct: 285 FNMLMDGLCNTGQLDKALSYLEKLKL-IGLCPTLVTYNILISGFSKVGNSSVVSELVREM 343
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + ++ L+N + I++ ++F +M++ + PD +Y +L+HG + +
Sbjct: 344 EDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNM 403
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K++ M++ LQP V + T+I G C E +ALK E+M++ V P+ + S
Sbjct: 404 VEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVK-NGVTPNVASYIS 462
Query: 233 LIKGLCAVGE 242
I+ LC G+
Sbjct: 463 TIQILCKDGK 472
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P I+ +I R ++ A +F M + + ++N G
Sbjct: 138 VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGF 197
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L+Q M+ V P+ +YN L+ +L A+KVFDE+ KR + VT+ LI GL
Sbjct: 198 ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGL 257
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C + +V +A L E M R + + P + F L+ GLC G+L AL + E++
Sbjct: 258 CRKGQVSKAEGLLERMKRAH-INPTTRTFNMLMDGLCNTGQLDKALSYLEKL 308
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L+Q V+P + ++I+ Y R L A +VFDE+S V ++N L+ +
Sbjct: 199 LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258
Query: 134 TCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++ + L + M++ +++P ++N+LM G + +L+ A +++ L PTLV
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318
Query: 193 TFGTLIYGLC--------------LE------------------LRVDEALKLKE--DMM 218
T+ LI G +E +R D+ K E +M
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + PD + LI GLC G + A + MV
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I R D+ + + ++ D + + I+ +I+ + + + ++
Sbjct: 141 NVFIYTILIEACCRNGDIDQAKVMFSRM-DDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ +M V + ++N+L+ GK+ +F +I ++ V+ +A +YNIL+ G
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A + + M + + PT TF L+ GLC ++D+AL E +++ + P
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEK-LKLIGLCPTLV 318
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
+ LI G VG S+ E+VR
Sbjct: 319 TYNILISGFSKVGNSSVV----SELVR 341
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P F N + ++ L+ F E Q V SF + A G + + +L
Sbjct: 71 PSSFSFNNALDLLAKSGNLDRTWGFFTEYLG-RTQFDVYSFWITIKAFCENGNVSKGFEL 129
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
ME VSP+ Y IL+ C + ++ A +F M L + +I G
Sbjct: 130 LAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFK 189
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + +L + M ++ V P+ + SLI C G+LSLA +E+ + + +A
Sbjct: 190 KGYKKDGFELYQKM-KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNA 247
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+ ++NA L +++ D F++M K SP + S+N + S L+ W F E L
Sbjct: 42 DAVINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLG 101
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R Q + +F I C V + +L M V P+ ++ LI+ C G++
Sbjct: 102 RT-QFDVYSFWITIKAFCENGNVSKGFELLAQ-METMGVSPNVFIYTILIEACCRNGDID 159
Query: 245 LA 246
A
Sbjct: 160 QA 161
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 3/218 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F L+ Y +I LG+ +++ + +++ P I+ +VI + R
Sbjct: 1211 KGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG-FSPNVQIYNSVIDALCKCRSAT 1269
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILM 163
A+ + +M + + +FNTL+ + G + + L + + + ++P+ SY L+
Sbjct: 1270 QAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLI 1329
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + L A + EM+ R P +VTFG LI+GL + +V EAL ++E M V
Sbjct: 1330 HGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE-RQV 1388
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD ++ LI GLC L A EEM+ ++ D
Sbjct: 1389 FPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1426
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 23/241 (9%)
Query: 35 NPNNTEAQPLKP---FRYNLL-HYDLIITKLGRAKMFDEVQ--QILHQL----------- 77
NPN PL R L+ DL++ +GR D V ++H L
Sbjct: 1319 NPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALI 1378
Query: 78 ----KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ +V P+ I+ +IS + R+L A + +EM NVQ + TL++ +
Sbjct: 1379 VREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFI 1438
Query: 134 TCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
+ +F+ ME K + PD S N ++ G + +A M K P
Sbjct: 1439 RSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEF 1498
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ T+I G + ++ AL+ DM++ KP+ ++SLI G C G+ A G
Sbjct: 1499 TYTTVISGYAKQGNLNGALRWLCDMIK-RKCKPNVVTYSSLINGYCKTGDTDFAEGLFAN 1557
Query: 253 M 253
M
Sbjct: 1558 M 1558
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHAL 107
+++ ++ +IT L V++ H L+ R + P ++ + +I + L A
Sbjct: 1286 DIITFNTLITGLCHE---GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVAS 1342
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
+ EM V +F L++ ++ GK+ + + M E+ V PD YN+L+ G
Sbjct: 1343 DLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 1402
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R L A + +EML++ +QP + TLI G + +A K+ E M + PD
Sbjct: 1403 CKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFE-FMEHKGICPD 1461
Query: 227 AQVFASLIKGLCAVGELSLAL 247
++IKG C G +S A+
Sbjct: 1462 IVSCNAMIKGYCQFGMMSEAI 1482
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I+ L + +M + IL ++ + V P+E ++ +I + R+ L A ++F+ M
Sbjct: 1395 YNVLISGLCKKRMLPAAKNILEEML-EKNVQPDEFVYATLIDGFIRSENLGDARKIFEFM 1453
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172
+ + S N ++ G + M K PD +Y ++ G L
Sbjct: 1454 EHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNL 1513
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A + +M+KR+ +P +VT+ +LI G C D A L + M+ + P+ +
Sbjct: 1514 NGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFAN-MQAEALSPNVVTYTI 1572
Query: 233 LIKGL 237
LI L
Sbjct: 1573 LIGSL 1577
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + F +I A + AL V ++M+ V V +N L++ + C K RM
Sbjct: 1354 TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL--CKK--RMLP 1409
Query: 144 -----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L +++EK V PD Y L+ G + S L DA K+F+ M + + P +V+ +I
Sbjct: 1410 AAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMI 1469
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
G C + EA+ +M +V + PD + ++I G G L+ AL + +M++ K
Sbjct: 1470 KGYCQFGMMSEAILCMSNMRKVGCI-PDEFTYTTVISGYAKQGNLNGALRWLCDMIKRK 1527
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVS-PDACSYNILMHGCVVS 169
MS T L+ A G + + T + + + E+Y S P+ N L+ V
Sbjct: 1066 SMSLAGAAPTRACLGALVAAYADAGMLGKATKMCERVREQYGSLPEVTHCNRLLKLLVEQ 1125
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR +DA K++DEML + + L+ GLCLE RV+E LKL E + P
Sbjct: 1126 RRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCI-PHVVF 1184
Query: 230 FASLIKGLCAVGELSLALGFKEEM 253
+ LI G C G++ L EM
Sbjct: 1185 YNVLIDGYCRRGDMGRGLLLLGEM 1208
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P+E + VIS Y + L AL+ +M + V ++++L+N G D
Sbjct: 1494 IPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEG 1553
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL- 201
LF M+ + +SP+ +Y IL+ ++ A F+ ML P VT L+ GL
Sbjct: 1554 LFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGLT 1613
Query: 202 -CLELRVD------EALKLKEDMMRVYN------VKPDAQVFASLIKGLCAVGELSLALG 248
C ++ + K+ ++ V+ P + ++I LC L AL
Sbjct: 1614 SCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPRNSAYNAIIFSLCRHNMLREALD 1673
Query: 249 FKEEMVR 255
FK M +
Sbjct: 1674 FKNRMAK 1680
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 4/207 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSS 115
++ A M + ++ +++ +PE + CN ++ R + A +++DEM
Sbjct: 1082 LVAAYADAGMLGKATKMCERVREQYGSLPE-VTHCNRLLKLLVEQRRWDDARKLYDEMLG 1140
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRLED 174
+ S L+ + +++ L + P YN+L+ G +
Sbjct: 1141 KDSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGR 1200
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
+ EM + PTLVT+G+LI L + +++ L + MR P+ Q++ S+I
Sbjct: 1201 GLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLE-MRKRGFSPNVQIYNSVI 1259
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
LC + A+ ++M + + D
Sbjct: 1260 DALCKCRSATQAMVILKQMFASGCDPD 1286
>gi|15232734|ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g09650, chloroplastic; AltName: Full=Protein HIGH
CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor
gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical protein [Arabidopsis thaliana]
gi|332641272|gb|AEE74793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 778
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 7/223 (3%)
Query: 26 LQLFKNPNPNPNNTEAQP-LKPFRY---NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
+ +FK PN + +P L P + + ++ L+ + ++ D + + + D
Sbjct: 386 VDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDD 445
Query: 82 RVV-PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
R P+E+ + V+S + A L++ A QV EM+ V ++N LL +IDR
Sbjct: 446 RNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDR 505
Query: 141 MTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DL + M + + PD SYNI++ GC++ A F+EM R + PT +++ TL+
Sbjct: 506 AEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLM 565
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ + A ++ ++MM VK D + L++G C +G
Sbjct: 566 KAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLG 608
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ + D + +L ++ D + P+ + + +I AL
Sbjct: 486 NRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAF 545
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+EM + + T S+ TL+ A G+ +F M + V D ++N+L+ G
Sbjct: 546 FNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYC 605
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+EDA +V M + P + T+G+L G+ + +AL L +++ VK
Sbjct: 606 RLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVK 662
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +LNA G D+ LF+ M ++ PD +YN+++ C R E V + +
Sbjct: 238 AFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERI 297
Query: 183 LKRRLQPTLVTFGTLI 198
+ + ++ + T +L+
Sbjct: 298 IDKGIKVCMTTMHSLV 313
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 5/182 (2%)
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
RV P+ F VIS + L A V ++ ++ + +V ++NT+++ G+ RM
Sbjct: 180 RVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRM 239
Query: 142 TD----LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
L +++E +SP+ ++N+L++G A +VF+EM ++ + ++VT+ L
Sbjct: 240 YHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSAL 299
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
++GLC E +V+E +KL D M+ + P+ S++ G C G ++ A G+ + M +
Sbjct: 300 VWGLCSEGKVEEGVKLV-DEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKN 358
Query: 258 IE 259
++
Sbjct: 359 VK 360
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 106/216 (49%), Gaps = 6/216 (2%)
Query: 50 NLLHYDLII---TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+++ Y+ II K GRA V +L ++ + + P E+ F +++ Y + A
Sbjct: 219 SVVTYNTIIDGYCKRGRAGRMYHVDALLKEMV-EAGISPNEVTFNVLVNGYCKDSNTAAA 277
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
++VF+EM + +V +++ L+ + + GK++ L M+ + P+ + N +++G
Sbjct: 278 VRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNG 337
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ DA D M ++ ++P +VT+ L+ G ++ +AL +KE M V+P
Sbjct: 338 FCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKE-AMSGKGVRP 396
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+A+++ LI G G+ G +EM + D
Sbjct: 397 NARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRAD 432
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 88/195 (45%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL + ++ + M + + + ++ V P + + ++ Y R ++ AL V
Sbjct: 327 NLATLNSVLNGFCKKGMMTDAEGWIDSMEQKN-VKPNVVTYTILVDGYRRLDKMKDALAV 385
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+ MS V+ + +N L+ G ++ L M K V D +YN+L+ V
Sbjct: 386 KEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCV 445
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A K+ DEML L+P +T+ T+I G C + + A +++ M + + +
Sbjct: 446 KGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKK-RANVV 504
Query: 229 VFASLIKGLCAVGEL 243
+ IK LC +G++
Sbjct: 505 TYNVFIKCLCRMGKM 519
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
S N LL+A++ ++D F+ + + VSPD ++NI++ G + +L A V ++
Sbjct: 152 SVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDI 211
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVD-----EALKLKEDMMRVYNVKPDAQVFASLIKGL 237
L P++VT+ T+I G C R +AL LKE M + P+ F L+ G
Sbjct: 212 RAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDAL-LKE--MVEAGISPNEVTFNVLVNGY 268
Query: 238 CAVGELSLALGFKEEMVRNKI 258
C + A+ EEM + I
Sbjct: 269 CKDSNTAAAVRVFEEMKQQGI 289
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P A S N L+ V + R++ A + F L+RR+ P L TF +I GLC ++ +A +
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+D +R + + P + ++I G C G
Sbjct: 208 AKD-IRAWGLAPSVVTYNTIIDGYCKRG 234
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI----S 95
EA K R N Y+ +I R + V +L +++ + V +I+ NV+
Sbjct: 387 EAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMR--MKGVRADIVTYNVLIGALC 444
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-P 154
G R A+++ DEM ++ ++NT++N G I ++ MEK
Sbjct: 445 VKGEVR---KAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRA 501
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ +YN+ + ++E+ ++ +EML++ L P VT+ T+ G+
Sbjct: 502 NVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGM 548
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 2/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + ++V ++ +++ + P+ + + +IS +G+ + A+++FDEM
Sbjct: 198 YNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEM 257
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+Q T K + TL+ GK++ +L M + P +Y L+ G S R+
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRV 317
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA+ V+ MLK +P +V LI L R+ EA++L E+ MR+ N P+ + +
Sbjct: 318 EDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEE-MRLLNCTPNVVTYNT 376
Query: 233 LIKGL 237
+IK L
Sbjct: 377 IIKSL 381
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 121/251 (48%), Gaps = 17/251 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+L++ + + +Q FK N F ++ Y +I L ++ E+ + +
Sbjct: 98 VLKIDVEVHVKIQFFKWAGKKRN---------FEHDSTTYMALIRCLDENRLVGELWRTI 148
Query: 75 HQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ K + P E+ ++ GR +++ AL +F ++ + T ++N+++ ++
Sbjct: 149 QDMVKSPCAIGPSEL--SEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLM 206
Query: 134 TCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G +++ +L+ M E + PD +Y+ L+ R + A ++FDEM + LQPT
Sbjct: 207 QEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTA 266
Query: 192 VTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+ TL+ G+ +L +V+EAL L +M R+ P + LI+GL G + A G
Sbjct: 267 KIYTTLM-GIYFKLGKVEEALNLVHEM-RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVY 324
Query: 251 EEMVRNKIEMD 261
+ M+++ + D
Sbjct: 325 KNMLKDGCKPD 335
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK ++ ++ +LK + + + +I +G+ A+ +F+EM
Sbjct: 445 YCSLINSLGKAKRYEAANELFQELKENCGSSSVRV-YAVMIKHFGKCGRFNEAMGLFNEM 503
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
V ++N L+ M+ +D LF+ ME+ +PD S+NI+++G +
Sbjct: 504 KKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGP 563
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A ++F +M ++P V++ T++ L +EA KL ++ M + D ++S
Sbjct: 564 KRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKE-MNSKGFEYDLITYSS 622
Query: 233 LIKGLCAVGE 242
+++ + V E
Sbjct: 623 ILEAVGKVDE 632
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 4/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG++ ++ + + D P+ ++ N+I+ GR+ L+ A+++F+EM
Sbjct: 304 YTELIRGLGKSGRVEDAYGVYKNMLKDG-CKPDVVLMNNLINILGRSDRLKEAVELFEEM 362
Query: 114 SSFNVQRTVKSFNTLLNAML--TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
N V ++NT++ ++ + + L ++ + V P + +Y+IL+ G + R
Sbjct: 363 RLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNR 422
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + +EM ++ P + +LI L R + A +L +++ +V+A
Sbjct: 423 VEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCG-SSSVRVYA 481
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
+IK G + A+G EM
Sbjct: 482 VMIKHFGKCGRFNEAMGLFNEM 503
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 2/173 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+C++I+ G+A+ E A ++F E+ +V+ + ++ CG+ + LF M+
Sbjct: 445 YCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMK 504
Query: 150 KYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K PD +YN L+ G V + +++A+ +F M + P + + ++ GL
Sbjct: 505 KLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPK 564
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
A+++ M + +KPDA + +++ L G A +EM E D
Sbjct: 565 RAMEMFAKM-KSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYD 616
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 3/212 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y+ I+ L + ++ E + +L +K + P + + ++ Y R LL+ A +V +
Sbjct: 249 VSYNTILDALLKRRLLQEARDLLLDMK-SKGLSPNKHTYNMLVCGYCRLGLLKEATKVIE 307
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSR 170
M+ N+ TV ++N L+N GKID + MEK V PD +YN L+ GC R
Sbjct: 308 IMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWR 367
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+ + + +EM K+ ++ VT+ ++ +C + + EA D M + PD +
Sbjct: 368 DSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTL-DKMEENGLSPDCVTY 426
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+LI C G++ A +EM +++D
Sbjct: 427 NTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDT 458
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 4/219 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLE 104
+R NLL + ++ L R + LK + VVP F +I Y ++
Sbjct: 171 YRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVK 230
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL ++MS F S+NT+L+A+L + DL M+ K +SP+ +YN+L+
Sbjct: 231 DALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLV 290
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L++A KV + M + L PT+ T+ L+ G C + ++DEA +++++M ++ NV
Sbjct: 291 CGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKM-NV 349
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + +LI G + S EEM + ++ +A
Sbjct: 350 LPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNA 388
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-L 144
+E+ + +I Y + + AL ++DEM + + ++N+++ + K+D+ D L
Sbjct: 492 DEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKL 551
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204
+++E + PD +YNI++HG + +E A++ +EM++ +P + T L+ GLC E
Sbjct: 552 NEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCRE 611
Query: 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ALKL ++ D + ++I LC G+ A EM K+ D
Sbjct: 612 GMLEKALKLFNTLVS-KGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPD 667
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 40/253 (15%)
Query: 48 RYNLL----HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
R NLL Y++++ DE +I +++ V+P+ + + +I + R
Sbjct: 311 RNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEK-MNVLPDVVTYNTLIDGCSQWRDS 369
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ +EM V+ ++N +L M G + T ME+ +SPD +YN L
Sbjct: 370 SEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTL 429
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL--------- 213
+ + ++ A+++ DEM + L+ T T+++ LC+E ++DEA L
Sbjct: 430 IGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGY 489
Query: 214 ---------------KE----------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
K+ D M+ + P + S+I GLC ++ A+
Sbjct: 490 ILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAID 549
Query: 249 FKEEMVRNKIEMD 261
EM+ N + D
Sbjct: 550 KLNEMLENGLVPD 562
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 8/195 (4%)
Query: 71 QQILHQLK-HDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
Q LH+L H TR +PE + + I Y + A Q+F++M N + + + NT
Sbjct: 121 QHELHKLILHPTRDLPEPSKELLDTSIGAYVQMDQPHLATQIFNKMKRLNYRPNLLTCNT 180
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEML 183
L+N+++ + Q+++ + P+ S+NIL++G + +++DA ++M
Sbjct: 181 LMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMS 240
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ P V++ T++ L + EA L D M+ + P+ + L+ G C +G L
Sbjct: 241 EFGCVPDTVSYNTILDALLKRRLLQEARDLLLD-MKSKGLSPNKHTYNMLVCGYCRLGLL 299
Query: 244 SLALGFKEEMVRNKI 258
A E M RN +
Sbjct: 300 KEATKVIEIMTRNNL 314
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 100/207 (48%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++T L +MF+ + +L +++ V P+ I F +I+ + A+ + A+
Sbjct: 101 SLVTYTILLTALTNQRMFESIPSLLAEVEL-AGVRPDSIFFNALINAFVEAKRMGEAINT 159
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F +M T +FNTL+ GK + +F +M E V P+ +YNIL+
Sbjct: 160 FWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWC 219
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKPD 226
R LE+AW V +M +P +VT+ T+ DE + +E ++ + V+
Sbjct: 220 DHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYA---NNDETWRAEELIVEIQTRVRTS 276
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +I G C G L AL ++M
Sbjct: 277 ERTWGIIIGGYCREGRLEEALRCVQQM 303
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 91/184 (49%), Gaps = 3/184 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ +II R +E + + Q+K D VP +IF ++ + A + ++ M
Sbjct: 280 WGIIIGGYCREGRLEEALRCVQQMK-DAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLM 338
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
F ++ + +++ LN + G + + +F +++E + PD Y+IL G V +++
Sbjct: 339 EKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQP 398
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A + +M L P +VTF T+I G C ++ A+++ + M + V P+ + F +
Sbjct: 399 EKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKS-GVYPNLRTFET 457
Query: 233 LIKG 236
LI G
Sbjct: 458 LIWG 461
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 91/208 (43%), Gaps = 1/208 (0%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I G +E Q++ + + V P + ++ + R LE A V +M
Sbjct: 175 FNTLIKGYGIVGKPEESQRVFDMMGVEGSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKM 234
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173
+ + + ++NT+ +A + R +L ++ V ++ I++ G RLE
Sbjct: 235 QAGGFEPDIVTYNTIASAYANNDETWRAEELIVEIQTRVRTSERTWGIIIGGYCREGRLE 294
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A + +M P +V F TL+ G L+ A+ +M + +KPD ++
Sbjct: 295 EALRCVQQMKDAGSVPNVVIFNTLLKGF-LDANDMAAVNKILGLMEKFGIKPDIVTYSHQ 353
Query: 234 IKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++G ++ + ++M+ IE D
Sbjct: 354 LNTFSSLGHMAKCMHVFDKMIEAGIEPD 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
A VF + + ++ ++ LL A+ + + L +E V PD+ +N L+
Sbjct: 85 QAHSVFKHLMDEGHKPSLVTYTILLTALTNQRMFESIPSLLAEVELAGVRPDSIFFNALI 144
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV-YN 222
+ V ++R+ +A F +M PT TF TLI G + + +E+ ++ DMM V +
Sbjct: 145 NAFVEAKRMGEAINTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVF-DMMGVEGS 203
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+P+ + L+K C L A G +M E D
Sbjct: 204 VRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPD 242
>gi|449479638|ref|XP_004155660.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 41/256 (16%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLL 103
K FR YD + L K F +++I+ Q K+D + EE +I YG+A +
Sbjct: 68 KQFRRKNDTYDSTVRFLAVRKKFSMIEEIIEAQKKYDE--IKEEGFVIRLIRLYGKAGMF 125
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNI 161
A ++FDE+ +RTV+SFN LL + + + D++ +F+ + E + D SYNI
Sbjct: 126 SQARKLFDELPELKCERTVRSFNALLVSCVKSKEFDQVEKIFREVPQELSIEADVSSYNI 185
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY---------------------- 199
+++ + A F+ M K ++P LVTF TL+
Sbjct: 186 VINAYCEMDDFDKAILFFNHMEKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKN 245
Query: 200 -------------GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
G+ L+ R+ + ++L M +KPD ++ +LI C G+L A
Sbjct: 246 IAPDLVSYNARLRGMVLDKRIQDGIELLAKMEE-KEIKPDVHIYNTLITSFCKDGDLEEA 304
Query: 247 LGFKEEMVRNKIEMDA 262
+ ++ ++++ +A
Sbjct: 305 KKWYYKLKESEVDPNA 320
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 105/210 (50%), Gaps = 10/210 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ ++ ++K FD+V++I ++ + + + + VI+ Y + A+ F+ M
Sbjct: 147 FNALLVSCVKSKEFDQVEKIFREVPQELSIEADVSSYNIVINAYCEMDDFDKAILFFNHM 206
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + +FNTLL A+ G+ ++ ME K ++PD SYN + G V+ +R+
Sbjct: 207 EKNGMEPDLVTFNTLLTALYRKGQFLDGESMWARMENKNIAPDLVSYNARLRGMVLDKRI 266
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVKPDAQ 228
+D ++ +M ++ ++P + + TLI C + ++EA KLKE V P+A
Sbjct: 267 QDGIELLAKMEEKEIKPDVHIYNTLITSFCKDGDLEEAKKWYYKLKES-----EVDPNAT 321
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +L+ LC G+ L +E + +
Sbjct: 322 TYRTLLPLLCEKGDFDSGLQLCKEAINKRF 351
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 2/174 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ VP + + +I ++ ++ A +V D M V V +++ L++ ++D
Sbjct: 248 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDE 307
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L Q++ + ++P +YNIL++ + +LEDA+K+F M +RR PT+VT+ TL+
Sbjct: 308 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLR 367
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
LC ++D A +L +M+ PDA + +L GL G++ A E+M
Sbjct: 368 ALCHHKQLDGAHRLYAEMI-AKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 5/211 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
+ L Y I+ +L + K D+ + ++ TR + P+ I+ V+S + +E A
Sbjct: 113 DALTYGPIVERLCKTKRIDDALATVEEMA--TRGIKPDAFIYNFVLSGLCQEEKVEEARL 170
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+F++M + V ++NTL+N + +I+ +LF+ M K P SYN L+ G
Sbjct: 171 LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 230
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ L A VFD+M++ P +VT+ TLI GL +V A ++ + M++ V P+
Sbjct: 231 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVK-KGVTPNV 289
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ LI G C V + A E+MV I
Sbjct: 290 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGI 320
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I+ L + FDE ++LH ++ R + I + +I++ + +E A ++ ++M
Sbjct: 48 YGILISCLCKVGNFDEAYKLLHTMRLK-RFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + + ++ ++ + +I D + + ++ + + PDA YN ++ G ++
Sbjct: 107 ARYAPPDAL-TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 165
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A +F++M+K+R+ P +VT+ TLI GLC R++ A +L ++M V P + +
Sbjct: 166 EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV-PTEVSYNT 224
Query: 233 LIKGLCAVGELSLALGFKEEMVRN 256
LI G C +L A ++MVR+
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRS 248
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 110/216 (50%), Gaps = 4/216 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LK F+ + Y II L + +E ++++ ++ P+ + + ++ + + +
Sbjct: 73 LKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR--YAPPDALTYGPIVERLCKTKRI 130
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNIL 162
+ AL +EM++ ++ +N +L+ + K++ LF+ M K ++P+ +YN L
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTL 190
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + R+E A+++F EM + PT V++ TLI G C + + A + + M+R N
Sbjct: 191 INGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS-N 249
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+ + +LI GL G++ A + MV+ +
Sbjct: 250 CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGV 285
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 11/199 (5%)
Query: 59 TKLGRAKMFDEVQQILHQLKHDTRVVPEEII---FCNVISFYGRARLLEHALQVFDEMSS 115
K GR + EV Q + + + R I+ C V +F + A ++ M
Sbjct: 21 AKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNF-------DEAYKLLHTMRL 73
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+R +++T++N + +++ +L + M +Y PDA +Y ++ ++R++DA
Sbjct: 74 KRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDA 133
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+EM R ++P + ++ GLC E +V+EA L E M++ + P+ + +LI
Sbjct: 134 LATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVK-QRINPNVVTYNTLIN 192
Query: 236 GLCAVGELSLALGFKEEMV 254
GLC + A +EM
Sbjct: 193 GLCKAWRIETAYELFKEMA 211
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 85/169 (50%), Gaps = 2/169 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L ++ ++L + V P + +I + + R ++ A ++
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG-VTPNVATYSCLIDGFCKVRRVDEAHKL 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
++M + + TV ++N LLN++ K++ LF+ M ++ P +YN L+
Sbjct: 312 LEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCH 371
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++L+ A +++ EM+ + P +T+ TL +GL +V EA +L E M
Sbjct: 372 HKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FNT+ + G+++++ +++Q M E + A Y IL+ ++A+K+ M
Sbjct: 12 TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+R + + + T+I LC RV+EA +L E M R PDA + +++ LC
Sbjct: 72 RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARY--APPDALTYGPIVERLCKTKR 129
Query: 243 LSLALGFKEEMVRNKIEMDA 262
+ AL EEM I+ DA
Sbjct: 130 IDDALATVEEMATRGIKPDA 149
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V P A ++N + G + RLE +V+ M++ +G LI LC DEA
Sbjct: 6 VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
KL MR+ K A ++++I LC + + A E+M R
Sbjct: 66 KLLH-TMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR 108
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 31/271 (11%)
Query: 8 SPFRLAS-LLRLQKDPKLALQLF---KNPNPNPNNTEAQPLKPFRYNLLHYDLIITK--- 60
+P+R+ +L+++KD L+ + F K NPN E + +LH I+TK
Sbjct: 156 TPYRMKHIMLKIKKDHVLSFEFFNWVKAQNPNCQTLETYSI------ILH---ILTKNHK 206
Query: 61 -----------LGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQ 108
LG + D ++ + + R+ +F ++ Y + + L +A+
Sbjct: 207 FKSAESVLKGILGSGSI-DHPSKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKLRNAID 265
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
VF +M + V+S N ++A ++ + D ++ M++Y +SP+ + N++M
Sbjct: 266 VFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMVMCAFC 325
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+LE A +VF M PT+ ++ TLI G C + ++ +KLK +M V+PD
Sbjct: 326 KWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLK-ILMEKNGVRPDD 384
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
F +LI G C G+L A EM N +
Sbjct: 385 VTFNTLINGFCRGGKLHEANKIFSEMKANDV 415
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + +I+ Y LL +++ M V+ +FNTL+N GK+ +
Sbjct: 347 PTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKI 406
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M+ V P+ +YN L++G E ++ DEML+ ++ ++T+ LI GLC+
Sbjct: 407 FSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNALILGLCM 466
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
E R +A L +++ R N+ P++ F++LI G C A + M+R+
Sbjct: 467 EGRTKKAAYLVKELDR-ENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRS 518
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 97/201 (48%), Gaps = 3/201 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I R E +I ++K + VVP I + +I+ Y + E ++ DEM
Sbjct: 387 FNTLINGFCRGGKLHEANKIFSEMKAND-VVPNTITYNTLINGYSQVGNSEMGGRLHDEM 445
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
++ + ++N L+ + G+ + L + +++ + P++ +++ L+ G V +
Sbjct: 446 LRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNS 505
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E A++++ M++ P TF LI C D A+++ +M ++ PD+ +
Sbjct: 506 ERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSE-RSIAPDSDTLSE 564
Query: 233 LIKGLCAVGELSLALGFKEEM 253
L +GL G+ LAL +EM
Sbjct: 565 LCRGLWLSGKEELALKLCKEM 585
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 6/183 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID--- 139
V P+++ F +I+ + R L A ++F EM + +V ++NTL+N G +
Sbjct: 380 VRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGG 439
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
R+ D +++ + D +YN L+ G + R + A + E+ + L P TF LI
Sbjct: 440 RLHD--EMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALIT 497
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C+ + A +L + M+R P+ F LI C + A+ EM I
Sbjct: 498 GQCVRKNSERAFQLYKSMIRS-GCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIA 556
Query: 260 MDA 262
D+
Sbjct: 557 PDS 559
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 110/210 (52%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L R + + +L ++K + P F ++ L+ AL
Sbjct: 246 NAVTYNILIGGLCRKGQVSKAEGLLERMKR-AHINPTTRTFNMLMDGLCNTGQLDKALSY 304
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+++ + T+ ++N L++ G +++L + ME + +SP +Y ILM+ V
Sbjct: 305 LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +E A+++F M + L P T+G LI+GLC++ + EA KL + M+ ++ ++P+
Sbjct: 365 SDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMH-LQPNDV 423
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
++ ++I G C AL F EEMV+N +
Sbjct: 424 IYNTMINGYCKECNSYKALKFLEEMVKNGV 453
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+++++ L D+ L +LK + P + + +IS + + ++ EM
Sbjct: 285 FNMLMDGLCNTGQLDKALSYLEKLKL-IGLCPTLVTYNILISGFSKVGNSSVVSELVREM 343
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ + ++ L+N + I++ ++F +M++ + PD +Y +L+HG + +
Sbjct: 344 EDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNM 403
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A K++ M++ LQP V + T+I G C E +ALK E+M++ V P+ + S
Sbjct: 404 VEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVK-NGVTPNVASYIS 462
Query: 233 LIKGLCAVGE 242
I+ LC G+
Sbjct: 463 TIQILCKDGK 472
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 2/172 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P I+ +I R ++ A +F M + + ++N G
Sbjct: 138 VSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGF 197
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L+Q M+ V P+ +YN L+ +L A+KVFDE+ KR + VT+ LI GL
Sbjct: 198 ELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGL 257
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
C + +V +A L E M R + + P + F L+ GLC G+L AL + E++
Sbjct: 258 CRKGQVSKAEGLLERMKRAH-INPTTRTFNMLMDGLCNTGQLDKALSYLEKL 308
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
L+Q V+P + ++I+ Y R L A +VFDE+S V ++N L+ +
Sbjct: 199 LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258
Query: 134 TCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G++ + L + M++ +++P ++N+LM G + +L+ A +++ L PTLV
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLV 318
Query: 193 TFGTLIYGLC--------------LE------------------LRVDEALKLKE--DMM 218
T+ LI G +E +R D+ K E +M
Sbjct: 319 TYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM 378
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + PD + LI GLC G + A + MV
Sbjct: 379 KRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMV 414
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I R D+ + + ++ D + + I+ +I+ + + + ++
Sbjct: 141 NVFIYTILIEACCRNGDIDQAKVMFSRM-DDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+ +M V + ++N+L+ GK+ +F +I ++ V+ +A +YNIL+ G
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++ A + + M + + PT TF L+ GLC ++D+AL E +++ + P
Sbjct: 260 KGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEK-LKLIGLCPTLV 318
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
+ LI G VG S+ E+VR
Sbjct: 319 TYNILISGFSKVGNSSVV----SELVR 341
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P F N + ++ L+ F E Q V SF + A G + + +L
Sbjct: 71 PSSFSFNNALDLLAKSGNLDRTWGFFTEYLG-RTQFDVYSFGITIKAFCENGNVSKGFEL 129
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
ME VSP+ Y IL+ C + ++ A +F M L + +I G
Sbjct: 130 LAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFK 189
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + +L + M ++ V P+ + SLI C G+LSLA +E+ + + +A
Sbjct: 190 KGYKKDGFELYQKM-KLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNA 247
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
+ ++NA +++ D F++M K SP + S+N + S L+ W F E L
Sbjct: 42 DAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLG 101
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R Q + +FG I C V + +L M V P+ ++ LI+ C G++
Sbjct: 102 RT-QFDVYSFGITIKAFCENGNVSKGFELLAQ-METMGVSPNVFIYTILIEACCRNGDID 159
Query: 245 LA 246
A
Sbjct: 160 QA 161
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 35/191 (18%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A VFD ++ + ++ +V S+NTL+N + G ++ L M V PD +Y++L++
Sbjct: 161 AQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLIN 220
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----- 219
G +++DA ++FDEML + L P VTF TLI G C RVD A+++ + M+
Sbjct: 221 GLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLP 280
Query: 220 ---VYN--------------------------VKPDAQVFASLIKGLCAVGELSLALGFK 250
YN +KPD + +LI G C G+L A +
Sbjct: 281 DLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHR 340
Query: 251 EEMVRNKIEMD 261
+ M++ I +D
Sbjct: 341 KRMIQENIRLD 351
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 2/162 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
+ V P+ + +I+ + ++ A ++FDEM + +F TL++ G++D
Sbjct: 206 SGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDL 265
Query: 141 MTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+++ Q++ + + PD +YN L++G L+ A + DEM + L+P T+ TLI
Sbjct: 266 AMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLID 325
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
G C E +D A + ++ M++ N++ D + +LI GLC G
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQE-NIRLDDVAYTALISGLCQEG 366
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 105/217 (48%), Gaps = 6/217 (2%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A ++P Y Y ++I L + D+ ++ ++ ++P + F +I + +
Sbjct: 205 ASGVQPDVYT---YSVLINGLCKESKMDDANELFDEMLVKG-LIPNGVTFTTLIDGHCKN 260
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSY 159
++ A++++ +M S + + ++NTL+ + G + + DL M K + PD +Y
Sbjct: 261 GRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTY 320
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ GC L+ A++ M++ ++ V + LI GLC E R +A K+ +M+
Sbjct: 321 XTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
V +KPD + + +I C G++ +EM R+
Sbjct: 381 V-GLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRD 416
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
++ VI+ + +A ++ A ++ DEM V+ V +TL+ + G+ID + F+ M
Sbjct: 1 MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----RLQPTLVTFGTLIYGLCL 203
+ SP+ +YN +++G + R+++ ++FD+M KR +P ++++ T+I LC
Sbjct: 61 GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCK 120
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
RVD+A + + MR P+ ++SLI GLC V + A
Sbjct: 121 AQRVDKAYEYFK-RMRAVGCAPNVVTYSSLIDGLCKVDRVDEA 162
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++ + L +A DE +IL ++ +++V P+ I + ++I + +A ++ A V
Sbjct: 247 NVVTYNVAVHGLCKAGKVDEAYRILLEMV-ESKVTPDVITYSSIIDGFCKAGRMDKADDV 305
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHG 165
F M +F TLL+ + + + F++ E V+ P +YN+LM
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGF---SEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDC 362
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +E A +++ +M +++ QP T+ LI LC RVDEA + D+M NV P
Sbjct: 363 VCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFL-DVMEADNVVP 421
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + +L++ LC GE+ A + +V
Sbjct: 422 NGAICHALVEVLCKQGEVDEACSVLDNVV 450
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 102/206 (49%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + DE +L QLK + +VP + + V++ + R L++
Sbjct: 142 NVVTYSSLIDGLCKVDRVDEAYSLLMQLKGED-MVPRAMYYNAVVNGFKRQGKPSECLEL 200
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
M + FN +L+A+ + ++ F+ +++ P+ +YN+ +HG
Sbjct: 201 LLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCK 260
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++++A+++ EM++ ++ P ++T+ ++I G C R+D+A + MM V+ P
Sbjct: 261 AGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMM-VHECIPHPV 319
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
F +L+ G + A E+MV
Sbjct: 320 TFMTLLHGFSEHKKSREAFRVHEDMV 345
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I +A D+ ++L ++K + V + ++ +I R ++ AL+ F M
Sbjct: 2 YTTVINGFCKAGQVDQAFELLDEMK-ERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCV 167
V ++NT++N + +ID +LF MEK PD SY+ ++
Sbjct: 61 GE-ECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-----KEDMMRVYN 222
++R++ A++ F M P +VT+ +LI GLC RVDEA L EDM+
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMV---- 175
Query: 223 VKPDAQVFASLIKGL 237
P A + +++ G
Sbjct: 176 --PRAMYYNAVVNGF 188
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 99/219 (45%), Gaps = 10/219 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQIL------HQLKHDTRVVPEEIIFCNVISFYGRARLL 103
N++ Y+ ++ L +A DE ++ ++ H P+ I + VI +A+ +
Sbjct: 67 NVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCE--PDVISYSTVIDALCKAQRV 124
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A + F M + V ++++L++ + ++D L Q+ + + P A YN +
Sbjct: 125 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAV 184
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G + + ++ M ++ ++ F +++ L ++A + E +++
Sbjct: 185 VNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLK-SG 243
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
KP+ + + GLC G++ A EMV +K+ D
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPD 282
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 29/229 (12%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
L Y++++ + A + +I H++K R P+ + +I RAR ++ A +
Sbjct: 352 GLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQ-PDANTYAPLIQCLCRARRVDEAKEF 410
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------------------QIME 149
D M + NV + L+ + G++D + Q++
Sbjct: 411 LDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVL 470
Query: 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
K V PD +Y ++ R++ A F++M R P LVT+ LI C D+
Sbjct: 471 KGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADD 530
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
A ++ E M+ P AQ +L L G+++ +VR +I
Sbjct: 531 AFRIFEAMVAA-GFTPQAQTMRTLSSCL-------RDAGYQDLLVRQRI 571
>gi|359492357|ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 476
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 129/256 (50%), Gaps = 13/256 (5%)
Query: 7 TSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK 65
SP + ++L R + LA Q F+ N T +++ Y +I L + +
Sbjct: 41 VSPIVVENVLKRFENAGMLAYQFFEWAGKQRNYT---------HSIRAYHTMIESLAKIR 91
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+ + ++++++ +++ E FC ++ Y R++ ++ A+ F+ M ++V + +F
Sbjct: 92 QYQIMWDLVNKMRS-LKILNVET-FCIIMRKYARSQKVKEAVYTFNIMEKYDVPPNLAAF 149
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
N+LL+A+ + + ++F M+ PD+ +Y+IL+ G + L A ++F EM+
Sbjct: 150 NSLLSALCKSKNVVKAQEIFNGMKDQFIPDSKTYSILLEGWGKAPNLPKAREIFREMVDM 209
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
P +VT+G ++ LC RVDEA+ + ++M KP + +++ L+ +
Sbjct: 210 GCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSV-CKPTSFIYSVLVHTYGIENRIED 268
Query: 246 ALGFKEEMVRNKIEMD 261
A+ +M RN+IE D
Sbjct: 269 AVYTFLDMERNEIEAD 284
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 106/214 (49%), Gaps = 12/214 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV-PEEIIFCNVISFYGRARLLEHALQ 108
+++ Y +++ L +A DE I+ ++ D+ V P I+ ++ YG +E A+
Sbjct: 214 DIVTYGIMVDILCKAGRVDEAVGIVKEM--DSSVCKPTSFIYSVLVHTYGIENRIEDAVY 271
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNILMH 164
F +M ++ V +N L+ A K++++ + ++++ K + P++ + NI+++
Sbjct: 272 TFLDMERNEIEADVAVYNALIGAFC---KVNKLKNAYRVLNEMDCKGIRPNSRTCNIILN 328
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+ ++A++VF M+K P T+ +I C +++ ALK+ + MR+
Sbjct: 329 SLISCGDTDEAFRVFRRMIKV-CDPDADTYTMMIKMFCENDKLEMALKVWK-YMRLKQFV 386
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P F+ LI GLC G S A EEM+ I
Sbjct: 387 PSMHTFSVLINGLCKKGNASKACILLEEMIEKGI 420
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148
++ +I + + L++A +V +EM ++ ++ N +LN++++CG D +F+ M
Sbjct: 287 VYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRM 346
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K PDA +Y +++ + +LE A KV+ M ++ P++ TF LI GLC +
Sbjct: 347 IKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNAS 406
Query: 209 EALKLKEDMMRVYNVKPDAQVFASL 233
+A L E+M+ ++P + F L
Sbjct: 407 KACILLEEMIE-KGIRPSSVTFGKL 430
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 100/207 (48%), Gaps = 4/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++ +++ L ++K + Q+I + +K + +P+ + ++ +G+A L A ++
Sbjct: 145 NLAAFNSLLSALCKSKNVVKAQEIFNGMKD--QFIPDSKTYSILLEGWGKAPNLPKAREI 202
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVV 168
F EM + ++ +++ + G++D + + M+ V P + Y++L+H +
Sbjct: 203 FREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGI 262
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+EDA F +M + ++ + + LI C ++ A ++ + M ++P+++
Sbjct: 263 ENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNE-MDCKGIRPNSR 321
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVR 255
++ L + G+ A M++
Sbjct: 322 TCNIILNSLISCGDTDEAFRVFRRMIK 348
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 105/208 (50%), Gaps = 3/208 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y +II +L + + DE + ++ + P+ + + ++S + L A+
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMV-GKGISPDVVTYSILVSGFCIVGQLNRAI 253
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
+ +EM N+ + ++ L++A+ GK+ ++ +M K V+ D Y+ LM G
Sbjct: 254 DLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + +A +VF M + + P + + +I GLC RVDEAL L E++ + N+ PD
Sbjct: 314 CLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQ-KNMVPD 372
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMV 254
+ SLI LC G +S +EM+
Sbjct: 373 TVTYTSLIDCLCKSGRISYVWDLFDEML 400
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +++ L + E + +L + V + +++ ++ Y + +A +V
Sbjct: 267 DIYTYTILVDALCKEGKVKEAENVLAVMVKAC-VNLDVVVYSTLMDGYCLVNEVNNAKRV 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F M+ V V ++ ++N + ++D +LF+ I +K + PD +Y L+
Sbjct: 326 FYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCK 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S R+ W +FDEML R P ++T+ LI LC +D A+ L + M+ ++P+
Sbjct: 386 SGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALF-NKMKDQAIRPNVY 444
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
F L+ GLC VG L AL F ++++
Sbjct: 445 TFTILLDGLCKVGRLKNALEFFQDLL 470
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 2/165 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I L + K DE + ++ H +VP+ + + ++I ++ + + +FDEM
Sbjct: 341 YSIMINGLCKIKRVDEALNLFEEI-HQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEM 399
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
V ++N L++A+ G +DR LF M ++ + P+ ++ IL+ G RL
Sbjct: 400 LDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRL 459
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
++A + F ++L + + T+ +I GLC E +DEAL L+ M
Sbjct: 460 KNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRM 504
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ FR + + Y ++I + + ++L +++ + + P +I+ +I + L++
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWS-IRPNVVIYSMIIDRLCKDTLVD 215
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A ++ EM + V +++ L++ G+++R DL +++ + ++PD +Y IL+
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILV 275
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
++++A V M+K + +V + TL+ G CL V+ A ++ M ++ V
Sbjct: 276 DALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM-GV 334
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
PD ++ +I GLC + + AL EE+
Sbjct: 335 TPDVHCYSIMINGLCKIKRVDEALNLFEEI 364
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI---IFCNVISFYGRARLLEHALQ 108
H++ I+ L K + + Q++ + V P+ I N +G+ L A
Sbjct: 59 FHFNKILISLVNVKRYPTAISLYKQMEL-SEVEPDYFTLNIIINCFCHFGQVVL---AFS 114
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHG 165
++ Q + NTL+ + GK+ R D +++ + SY IL++G
Sbjct: 115 GVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHD--KVLAQGFRLSGISYGILING 172
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
A ++ + + ++P +V + +I LC + VDEA L +M+ + P
Sbjct: 173 VCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVG-KGISP 231
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D ++ L+ G C VG+L+ A+ EMV I D
Sbjct: 232 DVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPD 267
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 104 EHALQVFDEMSSFNVQRTVKSF--NTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYN 160
+ A+ F+ M F+V T +F N +L +++ + L++ ME V PD + N
Sbjct: 40 DDAVSQFNHM--FHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLN 97
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
I+++ ++ A+ ++LK QP +T TL+ GLCLE +V EAL+ D +
Sbjct: 98 IIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRF-HDKVLA 156
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLAL 247
+ + LI G+C +GE A+
Sbjct: 157 QGFRLSGISYGILINGVCKIGETRAAI 183
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I +A D I + + + P +++ N++ + + + A + D+M
Sbjct: 370 YSTLIDGFSKAGDLDVAMSIWNDMT-NAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKM 428
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S N +FNTL+ ++ G+ R ++F M +Y P+ +YN L+HG
Sbjct: 429 SLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNC 488
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
EDA ++ EML + +LV++ T I GLC + EA+ L M+ + ++PDA F +
Sbjct: 489 EDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMI-IQGIQPDAFTFNA 547
Query: 233 LIKGLCAVGELSLA 246
+I C G + A
Sbjct: 548 IIHAYCKEGNVRAA 561
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 41/257 (15%)
Query: 30 KNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89
++ +P PN EA ++ + +L A D VQ L +++ PE +
Sbjct: 42 RSRSPAPNAGEALARA--------HEATVRRLAAAGDLDGVQYTLQEMRLRGVACPEGAL 93
Query: 90 FCNVISFYGRARLLEHALQVFDEMSS--FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147
+ +F RA + AL+ F TV+ +N LL+A+L + + ++
Sbjct: 94 VAAICAF-ARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDN 152
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
M K V P+ +YN+L+ + R+ A ++ DEM ++ +P V+ T+I LC R
Sbjct: 153 MRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDR 212
Query: 207 VDEALKLKEDMMRV---YN--------------------------VKPDAQVFASLIKGL 237
+DEA + +M V YN ++PD + S++
Sbjct: 213 LDEARGILAEMTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAF 272
Query: 238 CAVGELSLALGFKEEMV 254
C EL +A MV
Sbjct: 273 CKARELRMACAILARMV 289
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 34 PNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93
P +N ++P N+ Y+L+I L + +++L ++ P+E+ +
Sbjct: 148 PVYDNMRKAGVEP---NVYTYNLLIKALCQNDRVGAARRMLDEMARKG-CRPDEVSHTTI 203
Query: 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153
IS + L+ A + EM+ S+N +++A+ CG+ RM ++F ++++ V
Sbjct: 204 ISALCKLDRLDEARGILAEMTPVGA-----SYNAVVHAL--CGQF-RMREVFLVVDEMVH 255
Query: 154 ----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
PD +Y ++ +R L A + M+ P + TF L+ G + +V +
Sbjct: 256 RGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHD 315
Query: 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
AL + + M P + LI+GLC +G+L AL
Sbjct: 316 ALGM-WNWMVAEGWAPSTISYNVLIRGLCHIGDLKRAL 352
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 39/232 (16%)
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I RA D + ++ +HD P ++ +++ R L+ + V+D M
Sbjct: 97 ICAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDNMRKA 156
Query: 117 NVQRTVKSFNTLLNAML--------------------------------TCGKIDRMTDL 144
V+ V ++N L+ A+ K+DR+ +
Sbjct: 157 GVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDRLDEA 216
Query: 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-- 202
I+ + ++P SYN ++H R+ + + V DEM+ R L+P V + +++ C
Sbjct: 217 RGILAE-MTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKA 275
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
ELR+ A+ + M P+ Q F L+KG G++ ALG MV
Sbjct: 276 RELRMACAILAR---MVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMV 324
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 3/186 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ ++ L EV ++ ++ H + P+ + + +++ + +AR L A + M
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRG-LRPDTVAYTSIVGAFCKARELRMACAILARM 288
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
+ V++F L+ GK+ ++ M + +P SYN+L+ G L
Sbjct: 289 VTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDL 348
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A VF M K P + T+ TLI G +D A+ + DM KP+ V+ +
Sbjct: 349 KRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNA-GCKPNVVVYTN 407
Query: 233 LIKGLC 238
++ LC
Sbjct: 408 MVDVLC 413
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 3/212 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ R + + Y I+ +A+ IL ++ + VP F ++ + +
Sbjct: 256 RGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEG-CVPNVQTFTVLVKGFFDDGKVH 314
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
AL +++ M + + S+N L+ + G + R +F M K PD +Y+ L+
Sbjct: 315 DALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLI 374
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + L+ A ++++M +P +V + ++ LC ++ D+A L D M + N
Sbjct: 375 DGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLI-DKMSLENC 433
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
P+ F +LI+ LC +G AL M R
Sbjct: 434 PPNTLTFNTLIRSLCDLGRAGRALNVFHGMRR 465
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNIL 162
E AL++ EM + + ++ S+NT ++ + I + M L +++ + + PDA ++N +
Sbjct: 489 EDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQGIQPDAFTFNAI 548
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H + A + M +V + +L+ GLC + ++D+A+ M+
Sbjct: 549 IHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGLCSQHKLDDAMVYLLKML-YEG 607
Query: 223 VKPDAQVFASLIKGL 237
+ P+ + L++G+
Sbjct: 608 ICPNEATWNVLVRGI 622
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 5/199 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ ++ + DE +I VP+ + + +I+ + +A L+ A ++
Sbjct: 44 DVVTYNTLLHGFCKVGELDEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRI 102
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-CVV 168
M S N+ V ++N+L+N + G++D L I++K SP+ +Y+ L+ G C
Sbjct: 103 LQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARML--IVDKGFSPNVITYSTLISGLCRE 160
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + +A K+F +LK+ +P + T+ LI GL E RV+EA +L +++ + ++PDA
Sbjct: 161 LRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVK-HGLEPDAI 219
Query: 229 VFASLIKGLCAVGELSLAL 247
+ I GLC G + AL
Sbjct: 220 TYTVFIDGLCKAGRVEDAL 238
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+++I L + +E ++ L KH P+ I + I +A +E AL + +
Sbjct: 186 YNILIDGLLKEDRVNEAFELFSGLVKHGLE--PDAITYTVFIDGLCKAGRVEDALLMLKD 243
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M V S N ++N + ++D L ME K SP+A S+N L+ G + +
Sbjct: 244 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC---LELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A F EMLKR ++PT+VT+ L+ GLC E R+ EA+ L + M+ V PD
Sbjct: 304 WKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVV 362
Query: 229 VFASLIKGLCAVGELSLA 246
+++LI GL G+L A
Sbjct: 363 TYSALIDGLGKAGKLDDA 380
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 7/212 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLEHALQ 108
+++ Y+ ++ L + DE + ++ D P I + +IS R R + AL+
Sbjct: 114 DVVTYNSLVNGLCKNGRVDEARMLIV----DKGFSPNVITYSTLISGLCRELRGVSEALK 169
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV 167
+F + + V ++N L++ +L +++ +LF + K+ + PDA +Y + + G
Sbjct: 170 LFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLC 229
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R+EDA + +M ++ P +V+ +I GLC E RVDEA L M P+A
Sbjct: 230 KAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSG-MEAKGCSPNA 288
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
F +LI G C G+ A+ +EM++ ++
Sbjct: 289 ISFNTLICGQCRAGKWKKAMTTFKEMLKRGVK 320
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++N LL+ + G++ L++ M K SPD +YN L+HG L++A K+FD
Sbjct: 12 TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGA 71
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
+KR P +VT+ LI G C ++DEA ++ + M+ N+ PD + SL+ GLC G
Sbjct: 72 VKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS-ENLVPDVVTYNSLVNGLCKNGR 130
Query: 243 LSLA 246
+ A
Sbjct: 131 VDEA 134
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 6/189 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +I L + K DE + +L ++ P I F +I RA + A+
Sbjct: 252 DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG-CSPNAISFNTLICGQCRAGKWKKAMTT 310
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTC---GKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
F EM V+ TV ++N L++ + G+I LF M EK PD +Y+ L+ G
Sbjct: 311 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 370
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ +L+DA ++ M + P + T+ +LI GLC +VDEAL+L M+ V P
Sbjct: 371 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCV-P 429
Query: 226 DAQVFASLI 234
D + ++I
Sbjct: 430 DTITYGTII 438
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + ++S + A +++ M V ++NTLL+ G++D +
Sbjct: 8 PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F +++ PD +YN L++G + +L++A ++ M+ L P +VT+ +L+ GLC
Sbjct: 68 FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
RVDEA L D P+ +++LI GLC
Sbjct: 128 NGRVDEARMLIVDK----GFSPNVITYSTLISGLC 158
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 110/199 (55%), Gaps = 13/199 (6%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLL 103
+ F +++ Y+ +I +A DE Q+IL ++ + +VP+ + + ++++ + R+
Sbjct: 74 RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN-LVPDVVTYNSLVNGLCKNGRVD 132
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ----IMEKYVSPDACSY 159
E + + D+ S NV +++TL++ + C ++ +++ + ++++ P+ +Y
Sbjct: 133 EARMLIVDKGFSPNVI----TYSTLISGL--CRELRGVSEALKLFGSVLKQGYEPEVPTY 186
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NIL+ G + R+ +A+++F ++K L+P +T+ I GLC RV++AL + +DM
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE 246
Query: 220 VYNVKPDAQVFASLIKGLC 238
V PD ++I GLC
Sbjct: 247 KGCV-PDVVSHNAVINGLC 264
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 6/202 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+ + Y + I L +A ++ +L + + VP+ + VI+ + + ++ A +
Sbjct: 217 DAITYTVFIDGLCKAGRVEDALLMLKDM-DEKGCVPDVVSHNAVINGLCKEKRVDEAEVL 275
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
M + SFNTL+ GK + MT +++++ V P +YNIL+ G
Sbjct: 276 LSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCK 335
Query: 169 SR---RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+R R+++A +FD M+++ P +VT+ LI GL ++D+A +L M P
Sbjct: 336 ARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL-GAMEAKGCIP 394
Query: 226 DAQVFASLIKGLCAVGELSLAL 247
+ + SLI GLC + ++ AL
Sbjct: 395 NVYTYNSLISGLCGLEKVDEAL 416
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
P+ +YN L+ G R+ DA +++ M+K P +VT+ TL++G C +DEALK+
Sbjct: 8 PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ V PD + +LI G C +L A + MV + D
Sbjct: 68 FDGAVKRGFV-PDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPD 114
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M K P +T+ L+ GLC R+ +A L E M++ PD + +L+ G C VG
Sbjct: 1 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKA-GYSPDVVTYNTLLHGFCKVG 59
Query: 242 ELSLAL 247
EL AL
Sbjct: 60 ELDEAL 65
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +++ Y+++I L + ++L QL D +P I + +I +
Sbjct: 166 RGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDN-CMPTVITYTILIEATIVEGGIN 224
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
A+++ +EM + + + ++N ++ M G ++R +L + K PD SYNIL+
Sbjct: 225 EAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILL 284
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + ++ K+ EM R +P VT+ LI LC R+DEA+ + + M+ +
Sbjct: 285 RAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIE-KEL 343
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PD + LI LC G L LA+G + M+ N
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 108/221 (48%), Gaps = 7/221 (3%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
L P Y+ YD +I+ L + D I+ + + +P+ + + +++ +
Sbjct: 343 LTPDTYS---YDPLISALCKEGRLDLAIGIMDYMISNG-CLPDIVNYNTILAALCKNGNA 398
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
AL++F+++ V S+NT+++A+ +CG R + M K V PD +YN L
Sbjct: 399 NQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSL 458
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ +E+A + D+M + +PT++++ ++ GLC R+D+A+ + +M+
Sbjct: 459 ISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIE-KG 517
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV-RNKIEMDA 262
+P+ + LI+G+ G + A+ + R+ I D+
Sbjct: 518 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVISQDS 558
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 105/215 (48%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHAL 107
++ Y+ II + + M + +++ L ++ ++I N++ +F + + +
Sbjct: 241 DMYTYNAIIRGMCKEGMVERAAELITSLT--SKGCKPDVISYNILLRAFLNQGKW-DEGE 297
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGC 166
++ EM S + +++ L++++ G+ID + ++M EK ++PD SY+ L+
Sbjct: 298 KLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL 357
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
RL+ A + D M+ P +V + T++ LC ++AL++ + +R P+
Sbjct: 358 CKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIF-NKLRGMGCPPN 416
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++I L + G+ S ALG M+ ++ D
Sbjct: 417 VSSYNTMISALWSCGDRSRALGMVPAMISKGVDPD 451
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++I+ L R DE +L ++ + + P+ + +IS + L+ A+ +
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVL-KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
D M S + ++NT+L A+ G ++ ++F + P+ SYN ++
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
A + M+ + + P +T+ +LI LC + V+EA+ L +DM + +P
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQS-GFRPTVI 488
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
+ ++ GLC V + A+G EM+
Sbjct: 489 SYNIVLLGLCKVRRIDDAIGMFAEMI 514
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 87/196 (44%), Gaps = 4/196 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K ++ +++ L+ T P+ + VIS + + +E A QV + M + + +
Sbjct: 117 KNIEKASRVMEILESHTE--PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVT 174
Query: 125 FNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+N ++ ++ K+ + L Q++ P +Y IL+ +V + +A K+ +EML
Sbjct: 175 YNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEML 234
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
R L P + T+ +I G+C E V+ A +L + KPD + L++ G+
Sbjct: 235 ARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTS-KGCKPDVISYNILLRAFLNQGKW 293
Query: 244 SLALGFKEEMVRNKIE 259
EM E
Sbjct: 294 DEGEKLVAEMFSRGCE 309
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 121/250 (48%), Gaps = 16/250 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L R + D + AL + K A+ K +++ YD+ + LG+AK +D +++ +
Sbjct: 94 LHRFRDDWRSALGILK---------WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFV 144
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++ D V + ++ + A E A+ +FD + F +++ +S N LL+ +
Sbjct: 145 ERMRGDKLVTLNTV--AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++++ + ++ +++P+A ++NI +HG + R+E+A EM +P ++++
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262
Query: 195 GTLIYGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+I C + E +K+ E M P++ + +++ L A E AL
Sbjct: 263 TTIIRCYCQQF---EFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319
Query: 253 MVRNKIEMDA 262
M R+ + D+
Sbjct: 320 MKRSGCKPDS 329
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 3/200 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+L++ L + K ++ + +L QLK + + P F I + +A +E AL EM
Sbjct: 194 NLLLDTLCKEKRVEQARVVLLQLK--SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMK 251
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLE 173
+ V S+ T++ + ++ ++ ME SP ++ +Y +M + E
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFE 311
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A +V M + +P + + LI+ L R++EA ++ M V + + S+
Sbjct: 312 EALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSM 371
Query: 234 IKGLCAVGELSLALGFKEEM 253
I C E A+ +EM
Sbjct: 372 IAMYCHHDEEDKAIELLKEM 391
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 4/215 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR ++ Y II + F +V ++L +++ + P I + ++S + E A
Sbjct: 255 FRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSP-PNSITYTTIMSSLNAQKEFEEA 313
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMH 164
L+V M + +N L++ + G+++ +F++ E VS + +YN ++
Sbjct: 314 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 373
Query: 165 GCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ A ++ EM L P + T+ L+ V E KL ++M+ +++
Sbjct: 374 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + LI+ LC A EEM+ I
Sbjct: 434 SLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 468
>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
Length = 632
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 3/207 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F + + Y ++ LG+A+ F + ++ ++ + + + F I + A +++A
Sbjct: 217 FAHTTITYCKMVHILGKARQFQSMVALIQEMGKEGALCMD--AFKIAIKSFAAAGEIKNA 274
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
+ VF+ M + V+SFN LL A+ G +F M +PD SY LM
Sbjct: 275 VGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTALMLAW 334
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+R L +A +V++EML+ L+P +V T+I GL R EA+K+ E +M+ P+
Sbjct: 335 CNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFE-LMKAKGPAPN 393
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI+ C G++ +A+ EEM
Sbjct: 394 VWTYTMLIRDHCKRGKMDMAMRCFEEM 420
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A++ F+EM Q V ++ LL ++DR+T L + M +K PD +YN
Sbjct: 410 MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNA 469
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-VDEALKLKEDMMRV 220
L+ +DA +++ +M+K+ L+PT+ T+ ++ L R + E+M R
Sbjct: 470 LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHR- 528
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ PD + I G G A + EEM++ ++
Sbjct: 529 KGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMK 567
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 26/216 (12%)
Query: 12 LASLLRLQKDPKLA--LQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM--- 66
+ LLR Q+ P+ +L K P PN + Y +L D K G+ M
Sbjct: 366 IEGLLRGQRRPEAVKMFELMKAKGPAPN--------VWTYTMLIRDHC--KRGKMDMAMR 415
Query: 67 -FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
F+E+Q + Q P+ + ++ YG A+ ++ + +EM+ +++
Sbjct: 416 CFEEMQDVGCQ--------PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTY 467
Query: 126 NTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV-SRRLEDAWKVFDEML 183
N L+ + D +++ M +K + P +YN++M + R V++EM
Sbjct: 468 NALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMH 527
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
++ + P + ++ I G R +EA K E+M++
Sbjct: 528 RKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQ 563
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ G AK D V +L ++ P+ + +I + + A +++ +M
Sbjct: 432 YTCLLVGYGNAKRMDRVTALLEEMTQKG-CPPDGRTYNALIKLLTNRNMPDDAARIYKKM 490
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRR 171
++ T+ ++N ++ + G+ M ++ K + PD SY + ++G + R
Sbjct: 491 IKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGR 550
Query: 172 LEDAWKVFDEMLKRRLQPTLVTF 194
E+A K +EM+++ ++ + +
Sbjct: 551 PEEACKYIEEMIQKGMKTPQIDY 573
>gi|15223927|ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g71060, mitochondrial; Flags: Precursor
gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical protein; 31939-30407 [Arabidopsis thaliana]
gi|332197036|gb|AEE35157.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L +L LAL +FK A+ K F++ +Y+ +I LG+ K F + ++
Sbjct: 101 LKKLSNAGVLALSVFK---------WAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLV 151
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+K + E F + Y RAR ++ A+ F +M F + FN +L+ +
Sbjct: 152 DDMKAKKLLSKE--TFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSK 209
Query: 135 CGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ +F M+K PD SY IL+ G L +V EM +P +V
Sbjct: 210 SRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVA 269
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+G +I C + +EA++ +M + N KP +F SLI GL + +L+ AL F E
Sbjct: 270 YGIIINAHCKAKKYEEAIRFFNEMEQ-RNCKPSPHIFCSLINGLGSEKKLNDALEFFE 326
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 12/212 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y +II +AK ++E + ++++ P IFC++I+ G + L A
Sbjct: 263 FEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRN-CKPSPHIFCSLINGLGSEKKLNDA 321
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNIL 162
L+ F+ S ++N L+ A RM D ++ ++ K V P+A +Y+I+
Sbjct: 322 LEFFERSKSSGFPLEAPTYNALVGAYCWS---QRMEDAYKTVDEMRLKGVGPNARTYDII 378
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H + +R ++A++V+ M +PT+ T+ ++ C + R+D A+K+ D M+
Sbjct: 379 LHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKI-WDEMKGKG 434
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +F+SLI LC +L A + EM+
Sbjct: 435 VLPGMHMFSSLITALCHENKLDEACEYFNEML 466
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLK-HDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ ++ R D+ ++L +++ +P ++ + VI+ R LE A Q
Sbjct: 230 SIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQ 289
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCV 167
+ D M + + + +FN L+ G +++ L ME + + P +YN ++HG
Sbjct: 290 LVDRMR-MSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMF 348
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S +E A F EM L P L+T+ +LI G C + EAL L D+ R + P
Sbjct: 349 RSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRA-GLAPSV 407
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ G C +G+L A FK+EMV + D
Sbjct: 408 LTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPD 441
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++L Y++++ R +E ++ ++ + P+ + +++ + R L +
Sbjct: 406 SVLTYNILLDGYCRLGDLEEARRFKQEMV-EQGCQPDVSTYTILMNGSRKVRNLAMVREF 464
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
FDEM S +Q ++NT ++A L G L ++M + +S D +YNI + G
Sbjct: 465 FDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCK 524
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S L+DA+ ++ +M+ LQP +T+ LI+ C R+ EA + + M+ V + P A
Sbjct: 525 SGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGML-VSGLPPSAV 583
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ I C G L A G+ ++M+ +
Sbjct: 584 TYTVFIHAYCRRGNLYSAYGWFQKMLEEGV 613
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 5/172 (2%)
Query: 85 PEEIIF-CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ I + C + + R RL E A +FD M + + ++ ++A G +
Sbjct: 545 PDCITYTCLIHAHCERGRLRE-ARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYG 603
Query: 144 LFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
FQ ++E+ V P+ +YN+L+H R A++ F EML+R L P T+ LI G C
Sbjct: 604 WFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNC 663
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E +EA++L +M + + + PD +L KG G+ A+ + E +V
Sbjct: 664 KEGNWEEAIRLYSEMHQ-HGIHPDHCTHNALFKGF-DEGQSKHAIQYMENVV 713
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 45/205 (21%)
Query: 84 VPEEIIFCNVI--SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141
VP I CN++ + AR + V+ EM ++ ++ ++NTLL++ G++D+
Sbjct: 192 VPPFIKECNLVLRALRDEARW-DDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQA 250
Query: 142 TDLFQIMEKYVSPDAC-----SYNILMHGCVVSRRLEDAWKVFD---------------- 180
L + ME P C +YN++++G LE A ++ D
Sbjct: 251 AKLLREME--ARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNPL 308
Query: 181 ------------------EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
EM + PT+VT+ T+I+G+ V EA ++K MR
Sbjct: 309 ITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNV-EAARMKFVEMRAMG 367
Query: 223 VKPDAQVFASLIKGLCAVGELSLAL 247
+ PD + SLI G C G L AL
Sbjct: 368 LLPDLITYNSLINGYCKAGNLKEAL 392
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+VP + + +I R+ +E A F EM + + + ++N+L+N G +
Sbjct: 333 IVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEAL 392
Query: 143 DLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +++ ++P +YNIL+ G LE+A + EM+++ QP + T+ L+ G
Sbjct: 393 WLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNG- 451
Query: 202 CLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+V ++E D M ++PD + + I +G S A E M+ I
Sbjct: 452 --SRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGIS 509
Query: 260 MD 261
D
Sbjct: 510 SD 511
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDAQV 229
R +D V+ EML+ ++P++VT+ TL+ E RVD+A KL +M R P
Sbjct: 211 RWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVT 270
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNK 257
+ +I GL GEL A + M +K
Sbjct: 271 YNVVINGLARKGELEKAAQLVDRMRMSK 298
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +I+ +I + +E A +F EM F + ++ L++ + G + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEM 255
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M+++ V P+ +YN +M+ R +DA+KVFDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E++ +EA ++ D M+ + P+ + +LI G C V +L AL
Sbjct: 316 EMKANEANEVM-DQMKSDGINPNLITYNTLIDGFCGVRKLGKAL 358
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 29/224 (12%)
Query: 50 NLLHYDLIITKL---GRAK----MFDEVQQILHQLKHDTRVVPEEIIFCNVISFY----G 98
NL Y+ ++ +L GR K +FDE++ E + CN++++ G
Sbjct: 267 NLHTYNCVMNQLCKDGRTKDAFKVFDEMR--------------ERGVSCNIVTYNTLIGG 312
Query: 99 RARLLE--HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPD 155
R ++ A +V D+M S + + ++NTL++ K+ + L + + + +SP
Sbjct: 313 LCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPS 372
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YNIL+ G A KV EM +R ++P+ VT+ LI +++A++L+
Sbjct: 373 LVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRS 432
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
M + + PD ++ LI G C G ++ A + MV K E
Sbjct: 433 SMEEL-GLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFE 475
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 38/245 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L R +E +++ Q+K D + P I + +I + R L AL +
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSDG-INPNLITYNTLIDGFCGVRKLGKALSL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAML------TCGKI------------------------- 138
++ S + ++ ++N L++ GK+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 139 -DRMTDLFQI---MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
D M Q+ ME+ ++PD +Y++L+HG + R+ +A ++F M++++ +P V
Sbjct: 421 SDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVI 480
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T++ G C E AL+L +M + P+ + +I+ LC + A G E+M
Sbjct: 481 YNTMVLGYCKEGSSYRALRLFREMEE-KELPPNVASYRYMIEVLCKERKSKEAEGLVEKM 539
Query: 254 VRNKI 258
+ + I
Sbjct: 540 IDSGI 544
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 1/171 (0%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F +LH L + ++ +I+ Y +++ L+ ++ F+EM FN
Sbjct: 74 FFTSSSLLHYLTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFN 133
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
LL ++ ++ F + V D S+ I++ GC + +E ++ + E+ +
Sbjct: 134 NLLTFVVGSSSFNQWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFG 193
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
P +V + TLI G C + +++A L +M + + + + + LI GL
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK-FGLVANEWTYTVLIHGL 243
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 125 FNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
+ ++NA + +D F ++++K P + +N L+ V S W F+E
Sbjct: 97 YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNES- 155
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
K ++ + +FG +I G C ++++ L ++ R + P+ ++ +LI G C GE+
Sbjct: 156 KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVEL-REFGFSPNVVIYTTLIDGCCKKGEI 214
Query: 244 SLA 246
A
Sbjct: 215 EKA 217
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 114/218 (52%), Gaps = 3/218 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K + +++ Y +I L +D+ ++L ++ ++P+ + F +I + + L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 331
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A ++++EM + + ++N+L++ + +F +M K PD +Y+IL
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ ++R++D ++F E+ + L P +T+ TL+ G C +++ A +L ++M+
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RG 450
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
V P + L+ GLC GEL+ AL E+M ++++ +
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + ++I + + L A Q+FD M S + + +++ L+N+ ++D
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +I K + P+ +YN L+ G S +L A ++F EM+ R + P++VT+G L+ GL
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Query: 202 CLELRVDEALKLKEDMMR--------VYN--------------------------VKPDA 227
C +++AL++ E M + +YN VKPD
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 525
Query: 228 QVFASLIKGLCAVGELSLA 246
+ +I GLC G LS A
Sbjct: 526 VTYNVMIGGLCKKGSLSEA 544
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 108/215 (50%), Gaps = 3/215 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + +++ Y ++I L + FD+ + ++++ + + + + ++I +
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG-IKADVVTYSSLIGGLCNDGKWD 297
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
++ EM N+ V +F+ L++ + GK+ +L+ +++ + ++PD +YN L+
Sbjct: 298 DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L +A ++FD M+ + +P +VT+ LI C RVD+ ++L + + +
Sbjct: 358 DGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE-ISSKGL 416
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+ + +L+ G C G+L+ A +EMV +
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + V++ ++ AL +F +M N++ +V ++ +++++ G D L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME K + D +Y+ L+ G + +D K+ EM+ R + P +VTF LI
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA +L +M+ + PD + SLI G C
Sbjct: 328 EGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFC 361
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +++ L++G + R+ +A + D M++ + +P LVT TLI GLCL+ RV EAL L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ M+ Y +PD + ++ LC G +LAL +M I+
Sbjct: 198 IDRMVE-YGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-K 150
N + GR + AL + D M + Q ++ +LN + G DLF+ ME +
Sbjct: 183 NGLCLKGR---VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ Y+I++ +DA +F+EM + ++ +VT+ +LI GLC + + D+
Sbjct: 240 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 299
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K+ +M+ N+ PD F++LI G+L A EM+ I D
Sbjct: 300 AKMLREMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ A+ +F+ M T FN L +A+ + D + + ME + D + I
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 110
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++L A+ V K +P +TF TL+ G CLE RV EA+ L + M+ +
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD ++LI GLC G +S AL + MV + D
Sbjct: 171 Q-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 209
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
N + Y+ ++ ++ + +++ ++ +R VP ++ ++ L AL+
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMV--SRGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+F++M + + +N +++ M K+D LF + +K V PD +YN+++ G
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L +A +F +M + P T+ LI
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ F +++ Y+++I L + +++ +L D P I + +I +
Sbjct: 160 RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG-CKPSVITYTILIEATILEGRIN 218
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILM 163
AL++FDE+ S ++ + ++N ++ + G DR D + + + +PD SYNIL+
Sbjct: 219 EALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILL 278
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ R ED ++ +M+ +P +VT LI C E RV EA+ + E +M+ +
Sbjct: 279 RSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLE-VMKEKGL 337
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PD+ + LI C G L LA+ + E+MV +
Sbjct: 338 TPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD 370
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 106/215 (49%), Gaps = 6/215 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y+ YD +I+ + D + L ++ D +P+ + + +++ +
Sbjct: 335 KGLTPDSYS---YDPLISAFCKEGRLDLAIEYLEKMVSDG-CLPDIVNYNTILATLCKFG 390
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYN 160
+ AL VF+++ TV+++NT+ +A+ +CG KI + + +++ K + PD +YN
Sbjct: 391 CADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYN 450
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ +++A + +M R QPT+++F ++ G+C RV E ++L M+
Sbjct: 451 SLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVE- 509
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
P+ + LI+G+ G + A+ + R
Sbjct: 510 KGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYR 544
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +IS + +A ++ A QVFD M S V ++N ++ ++ + GK++ ++
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++++ P +Y IL+ ++ R+ +A ++FDE++ R L+P L T+ +I G+C
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248
Query: 204 ELRVDEAL 211
E D AL
Sbjct: 249 EGMEDRAL 256
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +I+E Y PD SYN ++ G + +++ A +VFD M R P +VT+ +I LC
Sbjct: 119 VMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCS 178
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+++ A ++ +++++ KP + LI+ G ++ AL +E+V + D
Sbjct: 179 RGKLELAFEVMDELLK-DGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD 235
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 7/220 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARL 102
+ R +L Y+ II + + M D + L R +++ N++ SF ++R
Sbjct: 230 RGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLS--ARGCNPDVVSYNILLRSFLNKSRW 287
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
E ++ +M + V + + L+++ G++ ++ ++M EK ++PD+ SY+
Sbjct: 288 -EDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDP 346
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ RL+ A + ++M+ P +V + T++ LC D AL + E + V
Sbjct: 347 LISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEV- 405
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
P + + ++ L + G AL EM+R I+ D
Sbjct: 406 GCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPD 445
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 106/196 (54%), Gaps = 4/196 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ + ++I+ L R + + Q+ LK + P+ I++ N++ + RA + A +VF
Sbjct: 165 IAFSILISILCRERRASQAQEFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFG 222
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSR 170
EM ++ V +++ +++++ CG+I R D+F ++++ P++ +YN LM V +
Sbjct: 223 EMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAG 282
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R E +V+++M + +P VT+ LI C + +++A+K+ +M P+A F
Sbjct: 283 RTEKVLQVYNQMKRLGCEPDTVTYNFLIETHCKDENLEDAIKVI-GLMAKKGCAPNASTF 341
Query: 231 ASLIKGLCAVGELSLA 246
+L + +G+++ A
Sbjct: 342 NTLFGCIAKLGDVNAA 357
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 2/216 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR + Y+ ++ G+ MFD + +K V E F ++ Y RA L A
Sbjct: 90 FRKSPEAYNEMVDFSGQVMMFDVAWYFIDLMKARNVDVTVET-FLILMRRYVRAGLAAEA 148
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
+ F+ M +N + +F+ L++ + + + + F ++ PD Y L+ G
Sbjct: 149 IHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSLKDKFEPDVIVYTNLVRGW 208
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + +A +VF EM ++P + T+ +I LC ++ A + +M+ +P+
Sbjct: 209 CRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDA-GCQPN 267
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + SL++ G L +M R E D
Sbjct: 268 SITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDT 303
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ ++ +A ++V Q+ +Q+K P+ + + +I + + LE A++V
Sbjct: 267 NSITYNSLMRIHVKAGRTEKVLQVYNQMKR-LGCEPDTVTYNFLIETHCKDENLEDAIKV 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M+ +FNTL + G ++ +++ M E + +YN LM V
Sbjct: 326 IGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVA 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S+ + K+ EM + +++P + T+ LI C + A K +M+ ++P
Sbjct: 386 SKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGHWNNAYKFFREMIDEKCLRPSLP 445
Query: 229 VFASLIKGLCAVGELSLALGFKEEMV 254
V+ +++ L G+L E+MV
Sbjct: 446 VYDMVLQQLRKAGQLKKHEELVEKMV 471
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 6/216 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E KP N Y ++I + M D +L+++K + + P+ + +I +
Sbjct: 205 EQGSTKP---NTRTYTIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDALCK 260
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
E+ +F EM N+ V +FN++++ + GK++ ++ + M EK V PD +
Sbjct: 261 LSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVIT 320
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+++ G + +++ A ++FD M+ + ++P ++++ LI G + ++DEA+++ ++
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREIS 380
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ +KP L+ GL +G A F +EM+
Sbjct: 381 Q-KGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEML 415
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++ +I L + ++ ++I+ + + V P+ I + +I YG ++ A ++
Sbjct: 282 NVCTFNSVIDGLCKEGKVEDAEEIMRYMI-EKGVDPDVITYNMIIDGYGLRGQVDRAREI 340
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVV 168
FD M + +++ + S+N L+N KID M +I +K + P + N+L+HG
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R + A FDEML P L T TL+ G V+EA+ + R + Q
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQ 459
Query: 229 VFASLIKGLCAVGELSLA 246
++ ++I GLC G+L A
Sbjct: 460 IYTAVIDGLCKNGKLDKA 477
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K YN + + +I L + + +L + P E+++ V++ + +
Sbjct: 136 KGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQ 195
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + M + + +++ +++A G +D T L M +K + PD +Y+ L+
Sbjct: 196 KAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLI 255
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY-- 221
+ E+ +F EM+ + P + TF ++I GLC E +V++A E++MR
Sbjct: 256 DALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDA----EEIMRYMIE 311
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + +I G G++ A + M+ IE D
Sbjct: 312 KGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPD 352
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 8/184 (4%)
Query: 79 HDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTVKSFNTLLNAMLTCG 136
H + +P E+ F +I ++ A+ +F ++ N+ + + T++N + G
Sbjct: 133 HFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKG 192
Query: 137 KIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ DL ++ME+ P+ +Y I++ L+ A + +EM ++ + P + T+
Sbjct: 193 HTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYS 252
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
TLI LC + + L +M+ + N+ P+ F S+I GLC G++ A EE++R
Sbjct: 253 TLIDALCKLSQWENVRTLFLEMIHL-NIYPNVCTFNSVIDGLCKEGKVEDA----EEIMR 307
Query: 256 NKIE 259
IE
Sbjct: 308 YMIE 311
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-- 102
K +++ Y+++I R K DE Q+ ++ + + I+ CNV+ +G L
Sbjct: 347 KSIEPDIISYNILINGYARQKKIDEAMQVCREISQ--KGLKPSIVTCNVL-LHGLFELGR 403
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS-YNI 161
+ A FDEM S + + TLL G ++ F +E+ Y
Sbjct: 404 TKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTA 463
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + +L+ A F+++ L P ++T+ +I G C E +DEA +DM+R
Sbjct: 464 VIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEA----KDMLRKM 519
Query: 222 ---NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D + + +++G ++S F EE+ +A
Sbjct: 520 EDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEA 563
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-D 155
+ + L+ A +F +M +V SF+ LL AM+ + LF+ + K P
Sbjct: 47 FQNVKCLDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVH 106
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+I+++ C + R + + V K+ + VTF TLI GL E +V +A+ L +
Sbjct: 107 EFILSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFK 166
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++R +P+ ++ +++ GLC G A
Sbjct: 167 KLVRENICEPNEVMYGTVMNGLCKKGHTQKAF 198
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 121/250 (48%), Gaps = 16/250 (6%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L R + D + AL + K A+ K +++ YD+ + LG+AK +D +++ +
Sbjct: 94 LHRFRDDWRSALGILK---------WAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFV 144
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+++ D V + ++ + A E A+ +FD + F +++ +S N LL+ +
Sbjct: 145 ERMRGDKLVTLNTV--AKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTLCK 202
Query: 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
++++ + ++ +++P+A ++NI +HG + R+E+A EM +P ++++
Sbjct: 203 EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISY 262
Query: 195 GTLIYGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+I C + E +K+ E M P++ + +++ L A E AL
Sbjct: 263 TTIIRCYCQQF---EFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATR 319
Query: 253 MVRNKIEMDA 262
M R+ + D+
Sbjct: 320 MKRSGCKPDS 329
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 3/200 (1%)
Query: 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114
+L++ L + K ++ + +L QLK + + P F I + +A +E AL EM
Sbjct: 194 NLLLDTLCKEKRVEQARVVLLQLK--SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMK 251
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHGCVVSRRLE 173
+ V S+ T++ + ++ ++ ME SP ++ +Y +M + E
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFE 311
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
+A +V M + +P + + LI+ L R++EA ++ M V + + S+
Sbjct: 312 EALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSM 371
Query: 234 IKGLCAVGELSLALGFKEEM 253
I C E A+ +EM
Sbjct: 372 IAMYCHHDEEDKAIELLKEM 391
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 4/215 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
FR ++ Y II + F +V ++L +++ + P I + ++S + E A
Sbjct: 255 FRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSP-PNSITYTTIMSSLNAQKEFEEA 313
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMH 164
L+V M + +N L++ + G+++ +F++ E VS + +YN ++
Sbjct: 314 LRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIA 373
Query: 165 GCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ A ++ EM L P + T+ L+ V E KL ++M+ +++
Sbjct: 374 MYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHL 433
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
D + LI+ LC A EEM+ I
Sbjct: 434 SLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDI 468
>gi|255660992|gb|ACU25665.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 376
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNI 161
L+ A+ V + M + +NTL+N ++ K + +F+ M + SP +YN
Sbjct: 145 LDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTVHCSPTIITYNT 204
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G + +A+ + E+L + L P ++T+ L+ GLCL+ +V+ AL+L + +
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQL-WNQVTSK 263
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
KPD Q+ LI GLC+VG++ LAL +M R K
Sbjct: 264 GFKPDVQMLNILIHGLCSVGKMQLALSLYFDMNRWK 299
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
++ Y+ +I L + +MF E ++ +L D + P I + ++ +E ALQ++
Sbjct: 199 IITYNTLINGLCKNEMFGEAYNLVKELL-DKGLNPGVITYSMLMKGLCLDHKVERALQLW 257
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
++++S + V+ N L++ + + GK+ L+ M ++ +P+ S+N LM G
Sbjct: 258 NQVTSKGFKPDVQMLNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+ +A ++ +L+ L+P ++++ + GLC R+ +A+ D
Sbjct: 318 GDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAILFLHD 364
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 38/241 (15%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L + D+ +L+ + + P ++ +++ E A++VF EM
Sbjct: 132 YSAMINGLCKEANLDKAVSVLNGMIK-SGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREM 190
Query: 114 SSFNVQRTVKSFNTLLN------------------------------AMLTCG-----KI 138
+ + T+ ++NTL+N +ML G K+
Sbjct: 191 GTVHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKV 250
Query: 139 DRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+R L+ Q+ K PD NIL+HG +++ A ++ +M + + P LV+ TL
Sbjct: 251 ERALQLWNQVTSKGFKPDVQMLNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTL 310
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+ G + + AL + ++R ++PD + +KGLC+ +S A+ F + V K
Sbjct: 311 MEGFYKDGDIRNALVIWARILR-NGLEPDIISYNITLKGLCSCNRISDAILFLHDAVTKK 369
Query: 258 I 258
I
Sbjct: 370 I 370
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 76/160 (47%), Gaps = 1/160 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
++ A +V+ E+ V +N +LN KI +L+++M + S+NI+
Sbjct: 6 IDSAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSKGNRSVSSFNIM 65
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
M G + ++ + +++ M K +T+G L++G C ++++L + E M
Sbjct: 66 MRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGFCKNGYINKSLHVLE-MAEQKG 124
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
DA ++++I GLC L A+ M+++ + +A
Sbjct: 125 GVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNA 164
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 16/198 (8%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ L+I L D Q L +LK V + FC +IS Y + + E A++ F M
Sbjct: 95 FGLVIDMLSEDNGCDLYWQTLEELKSGG-VSVDSYCFCVLISAYAKMGMAEKAVESFGRM 153
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF--------QIMEKYVSPDACSYNILMHG 165
F+ + V ++N +L M+ R F ++++ SP+ ++ ILM G
Sbjct: 154 KEFDCRPDVFTYNVILRVMM------REEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDG 207
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R DA K+FD+M R + P VT+ LI GLC D+A KL +M N P
Sbjct: 208 LYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNY-P 266
Query: 226 DAQVFASLIKGLCAVGEL 243
D+ +L+ G C +G +
Sbjct: 267 DSVAHNALLDGFCKLGRM 284
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 11/218 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL + +++ L + + Q++ + + P + + +IS + + A ++
Sbjct: 197 NLYTFGILMDGLYKKGRTSDAQKMFDDMTGRG-ISPNRVTYTILISGLCQRGSADDARKL 255
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-----SYNILMH 164
F EM + + N LL+ G++ +L ++ EK D Y+ L+
Sbjct: 256 FYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEK----DGFVLGLRGYSSLID 311
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G +RR A++++ MLK+ ++P ++ + LI GL ++++ALKL M +
Sbjct: 312 GLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPS-KGIS 370
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD + ++IK LC G L + EM + DA
Sbjct: 371 PDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDA 408
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQIL-HQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
F L Y +I L RA+ + + ++ + LK + + P+ I++ +I +A +E
Sbjct: 299 FVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIK--PDIILYTILIQGLSKAGKIED 356
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMH 164
AL++ M S + +N ++ A+ G ++ L ++ E PDAC++ IL+
Sbjct: 357 ALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILIC 416
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ + +A ++F E+ K P++ TF LI GLC + EA
Sbjct: 417 SMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEA 462
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
RAR A +++ M N++ + + L+ + GKI+ L M K +SPD
Sbjct: 315 RARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTY 374
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
YN ++ LE+ + EM + P T LI +C V EA ++ ++
Sbjct: 375 CYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEI 434
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ P F +LI GLC GEL A
Sbjct: 435 EKS-GCSPSVATFNALIDGLCKSGELKEA 462
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 11/208 (5%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P K + Y+ +I L + +E + + ++ +T P+ +I R
Sbjct: 363 SMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMS-ETESFPDACTHTILICSMCRN 421
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
L+ A ++F E+ +V +FN L++ + G++ L ME V A +
Sbjct: 422 GLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKME--VGRPASLFL 479
Query: 161 ILMHGC-------VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
L H V S + A++ P +V++ LI G C +D ALKL
Sbjct: 480 RLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKL 539
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+++++ + PD+ + +LI GL VG
Sbjct: 540 L-NVLQLKGLSPDSVTYNTLINGLHRVG 566
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM-TDLFQIMEKYVSPDACS 158
ARLL H ++V S F R S N + M+ G I + DL + SPD S
Sbjct: 462 ARLLLHKMEVGRPASLF--LRLSHSGNRSFDTMVESGSILKAYRDLAHFADTGSSPDIVS 519
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
YN+L++G + ++ A K+ + + + L P VT+ TLI GL R +EA KL
Sbjct: 520 YNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKL 574
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
+ S+N L+N G ID L +++ K +SPD+ +YN L++G R E+A+K+F
Sbjct: 517 IVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLF 575
>gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g77405-like [Glycine max]
Length = 477
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 17/200 (8%)
Query: 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129
++ + H LKH V + +I L + AL F M F + S+NTL+
Sbjct: 177 LKPLWHFLKHSPHVTTATVTC--LIKLLSEQGLADEALLTFHRMKQFRCRPDTHSYNTLI 234
Query: 130 NAMLTCGKIDRMTDLFQIMEK---YVSPDACSYNILM-----HGCVVS------RRLEDA 175
+A+ G + + Q ME PD +Y+IL+ HG + RR+ +A
Sbjct: 235 HALCRVGNFAKARSILQQMELPGFRCPPDTFTYSILISSYCRHGILTGCWKATRRRIYEA 294
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
++F ML R+L P +VT+ LI G C LR++ AL+L +DM R V P+ + +
Sbjct: 295 GRLFRLMLFRKLVPDVVTYNALIDGCCKTLRMERALELFDDMKRS-GVVPNRVTYGCFVS 353
Query: 236 GLCAVGELSLALGFKEEMVR 255
CAV E+ + EM R
Sbjct: 354 YYCAVNEIDKGVEMLREMQR 373
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
+FDE+ D ++P +II+ V+S +A+ + A ++F +M + R + ++
Sbjct: 220 LFDEMT--------DRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITY 271
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV-----SRRLEDAWKVFD 180
N LLN G +D L Q++ K D ++ +GC++ +RR E+A +
Sbjct: 272 NVLLNGFCKSGYLDDAFTLLQLLTK----DGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+ML+ ++P ++ + +I GL E RV EAL L +M ++PD + +LIKG C +
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTE-RGLRPDTICYNALIKGFCDM 386
Query: 241 GELSLALGFKEEMVRN 256
G L A + E+ ++
Sbjct: 387 GYLDEAESLRLEISKH 402
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 15/240 (6%)
Query: 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHY-DLIITKLGRAKMFD 68
+ + S+L+ Q D +L +LF LK + DLII KL + F+
Sbjct: 62 YTITSVLQEQPDTRLGFRLF-----------IWSLKSWHLRCRTVQDLIIGKLIKENAFE 110
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
++L +LK+ + E F +I Y A + E A++ F M F+ + + +FN +
Sbjct: 111 LYWKVLQELKNSAIKISSEA-FSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLI 169
Query: 129 LNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
L+ ++ ++ Q+++ ++PD +Y IL+HG + + +DA +FDEM R +
Sbjct: 170 LHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGI 229
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P + + ++ GLC ++ +A +L MR D + L+ G C G L A
Sbjct: 230 LPNQIIYSIVLSGLCQAKKIFDAQRLFSK-MRASGCNRDLITYNVLLNGFCKSGYLDDAF 288
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 27/227 (11%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++I + + + ++ Q I +++ +P + F ++I+ +A LE A +F +M
Sbjct: 411 YSILICGMCKNGLINKAQHIFKEMEK-LGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469
Query: 114 SSFN--------VQRTVKSFN-----TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
Q T K F+ ++ + G I + L Q+++ V PD +Y
Sbjct: 470 EIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTY 529
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NIL++G + A+K+F EM + P VT+GTLI GL R ++AL++ E M++
Sbjct: 530 NILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVK 589
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLAL-----------GFKEEMVR 255
V P++ + +++ C +SLAL G+++E VR
Sbjct: 590 KGCV-PESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDEKVR 635
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++LI+ L R + F + +Q+ + P+ + + +I + + AL +
Sbjct: 162 DLFAFNLILHFLVRKEAFLLALAVYNQMLK-CNLNPDVVTYGILIHGLCKTCKTQDALVL 220
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
FDEM+ + ++ +L+ + KI LF M + D +YN+L++G
Sbjct: 221 FDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCK 280
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S L+DA+ + + K ++ +G LI GL R +EA + M+R N+KPD
Sbjct: 281 SGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLR-ENIKPDVM 339
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++ +I+GL G ++ AL EM + D
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDT 373
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y++++ ++ D+ +L L D ++ C + + RAR E A
Sbjct: 267 DLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLF-RARRYEEAHMW 325
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+ +M N++ V + ++ + G++ + +T L ++ E+ + PD YN L+ G
Sbjct: 326 YQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCD 385
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L++A + E+ K P T+ LI G+C +++A + ++M ++ P
Sbjct: 386 MGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKL-GCLPSVV 444
Query: 229 VFASLIKGLCAVGELSLA--LGFKEEMVR 255
F SLI GLC L A L ++ E+VR
Sbjct: 445 TFNSLINGLCKANRLEEARLLFYQMEIVR 473
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 49/252 (19%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L RA+ ++E ++ + + P+ +++ +I + + AL +
Sbjct: 302 GVIGYGCLINGLFRARRYEEAHMWYQKMLREN-IKPDVMLYTIMIRGLSQEGRVTEALTL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
EM+ ++ +N L+ G +D L +I + P+ +Y+IL+ G
Sbjct: 361 LGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCK 420
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----------------LK 212
+ + A +F EM K P++VTF +LI GLC R++EA L+
Sbjct: 421 NGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLR 480
Query: 213 LKEDMMRVYNVK-------------------------------PDAQVFASLIKGLCAVG 241
L + +V+++ PD + + LI G C G
Sbjct: 481 LSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFG 540
Query: 242 ELSLALGFKEEM 253
++ A +EM
Sbjct: 541 NINGAFKLFKEM 552
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 3/210 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRA+ F + ++L ++ D P + + +I YGRA L A
Sbjct: 384 FKHDGHTYTTMVGILGRARQFGAINKLLAEMVRDG-CQPNVVTYNRLIHSYGRANYLNEA 442
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+ VFD M Q ++ TL++ G +D ++Q M E ++SPD +Y+++++
Sbjct: 443 VSVFDRMQEAGCQPDRVTYCTLIDIHAKAGFLDVALHMYQKMQEAHLSPDTFTYSVIINC 502
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A K+F EM+ + P LVT+ +I AL+L DM +P
Sbjct: 503 LGKAGHLTSAHKLFCEMVDQGCVPNLVTYNIMIALQAKARNYPTALELYRDMQNA-GFQP 561
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D ++ +++ L G L A EM R
Sbjct: 562 DKVTYSIVMEVLGHCGHLEEAEAIFTEMKR 591
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+++I +A+ + ++ ++ + P+++ + V+ G LE A +
Sbjct: 527 NLVTYNIMIALQAKARNYPTALELYRDMQ-NAGFQPDKVTYSIVMEVLGHCGHLEEAEAI 585
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM N + L++ G +++ + +Q M + P+ + N L+ +
Sbjct: 586 FTEMKRKNWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLR 645
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
RL DA+ + ML+ LQP+L T+ TL+ C E R + ++M V
Sbjct: 646 VHRLSDAYNLLQSMLRLGLQPSLQTY-TLLLSCCTEARSSFDMGFCGELMAV 696
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 97/185 (52%), Gaps = 3/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ + L R E + +LH + + V P + + +IS + + + A ++F EM
Sbjct: 345 YNTLACGLCRVNRMAEAKTLLH-IMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREM 403
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRL 172
+ +V ++N +++ + G I + MEK + PD +Y L+HG V+ ++
Sbjct: 404 AGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKV 463
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ A K+F+EM R +P +V + LI GL E R +EA +L +DM++ + PD ++++
Sbjct: 464 DVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQLYDDMLKA-GLTPDDSLYSA 522
Query: 233 LIKGL 237
L+ L
Sbjct: 523 LVGSL 527
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 7/207 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RVVPEEIIFCNVISFYGRA 100
P R N L Y+ ++ R K VQ++L +++ V I + +S G
Sbjct: 159 PRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVGTYTILVDSLSTAGDI 218
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
+E V DEM + NV V + ++NA G + R +++F + + + P+ +Y
Sbjct: 219 SKVE---AVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTY 275
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+L++G ++E A + +M R + + F T+I G C + VD ALK+K M +
Sbjct: 276 GVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEK 335
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
+ ++ D + +L GLC V ++ A
Sbjct: 336 M-GIELDVYTYNTLACGLCRVNRMAEA 361
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 106/218 (48%), Gaps = 5/218 (2%)
Query: 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLE 104
P + L +++ ++ D+ + +L ++ +H R+ + + +++ Y R +
Sbjct: 127 PGSVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRL--NALCYNSLLDCYVRRKDDA 184
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
++ + M + ++ TV ++ L++++ T G I ++ + M+ K V+ D Y ++
Sbjct: 185 RVQELLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVI 244
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + + A +VFDE + ++P T+G LI G C +++ A L DM + V
Sbjct: 245 NAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADM-QGRGV 303
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +F ++I G C G + AL K M + IE+D
Sbjct: 304 GHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELD 341
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 101/276 (36%), Gaps = 71/276 (25%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE- 112
Y +++ L A +V+ ++ ++K V + ++ VI+ Y RA + A +VFDE
Sbjct: 205 YTILVDSLSTAGDISKVEAVVDEMKAKN-VAGDVYLYTAVINAYCRAGNVRRASEVFDEC 263
Query: 113 ----------------------------------MSSFNVQRTVKSFNTLLNAMLTCGKI 138
M V FNT+++ G +
Sbjct: 264 VGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGMV 323
Query: 139 DRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
D + MEK + D +YN L G R+ +A + M+++ + P VT+ TL
Sbjct: 324 DNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTL 383
Query: 198 IYGLCLELRVDEALKLKEDMMR--------VYNVK------------------------- 224
I C E + EA +L +M YNV
Sbjct: 384 ISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGL 443
Query: 225 -PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD +ASL+ G C G++ +AL EEM E
Sbjct: 444 VPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTE 479
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 117/226 (51%), Gaps = 6/226 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E + ++P ++ Y+ +I+ L + + ++L + + ++ P + F +I
Sbjct: 279 NKMETKGIRP---DVFTYNSLISCLCNYGRWSDASRLLSNM-IERKINPNVVTFSALIDA 334
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
+ + L A +++DEM ++ + ++++L+N ++D +F++M K P+
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
+YN L+ G ++R+E+ ++F EM +R L VT+ TLI GL D A K+ +
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
M+ V PD ++ L+ GLC G+L AL E + ++K+E D
Sbjct: 455 KMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 98/182 (53%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + + M + + + S+N L+N ++
Sbjct: 74 SRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL 133
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD + + L++G S+R+ DA + D+M++ +P VTF TLI+
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIH 193
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +PD + +++ GLC G++ LAL ++M + KIE
Sbjct: 194 GLFLHNKASEAVALVDQMVQ-RGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 260 MD 261
D
Sbjct: 253 AD 254
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 109/205 (53%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L + D +L +++ ++ + +I+ +I + + ++ A +
Sbjct: 219 DLVTYGAVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYNTIIDGLCKYKHIDDAFAL 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVV 168
F++M + ++ V ++N+L++ + G+ + L ++E+ ++P+ +++ L+ V
Sbjct: 278 FNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVK 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREM 421
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 108/213 (50%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + K FD V + ++++ R+ + + +I+ + R L AL V
Sbjct: 79 SIVEFNKLLSAIAKMKKFDLVISLGERMQN-LRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M + + + ++LLN +I D + + Q++E PD ++N L+HG +
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFL 197
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A + D+M++R QP LVT+G ++ GLC +D AL L + M + ++ D
Sbjct: 198 HNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKG-KIEADVV 256
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ ++I GLC + A +M I D
Sbjct: 257 IYNTIIDGLCKYKHIDDAFALFNKMETKGIRPD 289
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK +E ++ ++ +V + + +I +A + A ++
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK+++ +F+ ++K + PD +YNI++ G
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P ++ + T+I G C + +EA L + M+ PD+
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE-MKEDGTLPDSG 571
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+ G+ + + +EM
Sbjct: 572 CYNTLIRARLRDGDKAASAELIKEM 596
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 136 GKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ + + LF + Y S A SY+ L +++ +L+DA +F EM++ R P++V
Sbjct: 24 AQLRKASPLFSLRGVYFS--AASYDYREKLSRNALLNLKLDDAIGLFGEMVQSRPLPSIV 81
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
F L+ + + D + L E M + + D + LI C +L LAL +
Sbjct: 82 EFNKLLSAIAKMKKFDLVISLGERMQNL-RISYDLYSYNILINCFCRRSQLPLALAVLGK 140
Query: 253 MVRNKIEMD 261
M++ E D
Sbjct: 141 MMKLGYEPD 149
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 7/212 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P+ P Y Y+ ++ L AK ++E ++++ ++ + R P E+ F I + + L
Sbjct: 2 PVAPDTYT---YNTVLKGLCIAKKWEEAEELMAEMIRN-RCPPNEVTFATQIRSFCQNGL 57
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
L+ A+Q+ D+M + V ++TL+N G +D+ DL M P+ YN
Sbjct: 58 LDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM--LCKPNTVCYNAA 115
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G ++ R ED ++ EM+++ P TF LI LC VD A+++ E M + Y
Sbjct: 116 LKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEK-YG 174
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+PD + +I L G + AL MV
Sbjct: 175 CEPDTVNYNIIINSLSERGRVDDALRLLNSMV 206
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 6/203 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ ++ RA+ + + +++ Q+ + D ++ E+ F +I + L+ +A QVF
Sbjct: 212 LGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI--EMTFNILIDMLCQNGLVNYATQVF 269
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
++M + + ++++LLN G ++ LF+ M PD SYN ++ G +
Sbjct: 270 EQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP--CKPDIFSYNAVLKGLCRAA 327
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R EDA ++ EM+ + P VTF LI LC + VD A+++ E M Y PD +
Sbjct: 328 RWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPN-YGSTPDIFTY 386
Query: 231 ASLIKGLCAVGELSLALGFKEEM 253
+LI G G L AL M
Sbjct: 387 NALINGFSEQGRLDDALKLLSTM 409
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 4/198 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ + L A+ ++++ +++ ++ P E F +IS + L++ A++V
Sbjct: 108 NTVCYNAALKGLCIAERWEDIGELMAEMVRKG-CSPNEATFSMLISSLCQNNLVDSAVEV 166
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
++M + + ++N ++N++ G++D L M PDA +N ++ G +
Sbjct: 167 LEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM--VCKPDALGFNAVLKGFCRA 224
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R DA ++ +M + +TF LI LC V+ A ++ E M R Y PD
Sbjct: 225 ERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPR-YRCTPDIVT 283
Query: 230 FASLIKGLCAVGELSLAL 247
++SL+ G G + +A+
Sbjct: 284 YSSLLNGFSEQGLVEVAI 301
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82
++A+QLF+ + P KP ++ Y+ ++ L RA +++ +++ ++
Sbjct: 298 EVAIQLFR----------SMPCKP---DIFSYNAVLKGLCRAARWEDAGELIAEMVGKD- 343
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
P E+ F +I+ + L++ A++V ++M ++ + ++N L+N G++D
Sbjct: 344 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 403
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
L M PDA SYN + G + R +DA ++ EML+ + P VTF
Sbjct: 404 KLLSTMS--CKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 453
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F T + + G +DR L M +Y +PD Y+ L++G ++ A + + M
Sbjct: 44 TFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM 103
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L +P V + + GLC+ R ++ +L +M+R P+ F+ LI LC
Sbjct: 104 L---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVR-KGCSPNEATFSMLISSLCQNNL 159
Query: 243 LSLALGFKEEMVRNKIEMDA 262
+ A+ E+M + E D
Sbjct: 160 VDSAVEVLEQMEKYGCEPDT 179
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 18/241 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ P LA++LF + + + + PL ++ ++ L +++ + ++ L+
Sbjct: 152 HRRPDLAIRLFLSLHRSHGIAQDLPL---------FNSLLDALVKSRRASKAASLVRALE 202
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
R P+ + + + + R + AL + +M + T ++N +L G++
Sbjct: 203 Q--RFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQL 260
Query: 139 DRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
D F M++ S PD SY ++HG V+ +L+ A KVFDEM +P+
Sbjct: 261 QHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTA 320
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
T+ LI C + +++A+ + +DM+R + P+ + LI+GLC G++ A+ +
Sbjct: 321 TYNALIQVTCKKGNLEDAVAVFDDMVRKGYI-PNVVTYTVLIRGLCHAGKVVRAMKLLDR 379
Query: 253 M 253
M
Sbjct: 380 M 380
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++NTL + R D+ Q++E ++P +YNI++ G S +L+ AW F +M
Sbjct: 211 TYNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQM 270
Query: 183 LKR-----RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+R +P +V++ T+++GL + ++D+A K+ D M + KP + +LI+
Sbjct: 271 KRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKV-FDEMSIEGCKPSTATYNALIQVT 329
Query: 238 CAVGELSLALGFKEEMVR 255
C G L A+ ++MVR
Sbjct: 330 CKKGNLEDAVAVFDDMVR 347
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
+P + + +I A + A+++ D M S + V+++N L+ L G+I++ D
Sbjct: 351 IPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLD 410
Query: 144 LFQIMEKYVS--PDACSYNILMHGCVVSRRLED---AWKVFDEMLKRRLQPTLVTFGTLI 198
LF+ M K P+ +YNI++ V +R ED A ++ EM+ R P F ++
Sbjct: 411 LFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVL 470
Query: 199 YGLCLELRVD---EALKLKEDMMRV 220
GL L + E L+++E R+
Sbjct: 471 NGLMLTGNQELSRELLRMQEKYTRL 495
>gi|297823431|ref|XP_002879598.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
gi|297325437|gb|EFH55857.1| hypothetical protein ARALYDRAFT_902735 [Arabidopsis lyrata subsp.
lyrata]
Length = 497
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 4/177 (2%)
Query: 85 PE-EIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMT 142
PE E IF + I Y RA +++AL FD M + + V +NT++N + G +D+
Sbjct: 154 PELEPIFRSAIDAYCRAGKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKAL 213
Query: 143 DLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+Q M K PD C++N L++G S + + A +F EM ++ +P +V+F TLI G
Sbjct: 214 RFYQRMGKERAKPDVCTFNTLINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGF 273
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+++E +K+ +M+ + + L+ GLC G + A G ++ +++
Sbjct: 274 LSRGKIEEGIKMAYEMIEI-GCRFSEATCEILVDGLCREGRVDDACGLVIDLSNSRV 329
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNTLINGYCRSSKFDLALDL 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
F EM + V SFNTL+ L+ GKI+ + ++++E + IL+ G
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSRGKIEEGIKMAYEMIEIGCRFSEATCEILVDGLCR 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + ++ R+ P+ +G+L+ LC E + D A+++ E++ + P
Sbjct: 311 EGRVDDACGLVIDLSNSRVLPSGFDYGSLVEKLCGENKADRAMEMVEELWKKGKT-PCFI 369
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L++GL G A GF EEM+ I D+
Sbjct: 370 ACTTLVEGLRKSGRTEKASGFMEEMMNAGILPDS 403
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 2/172 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P ++ V++ Y ++ ++ AL+ + M + V +FNTL+N K D DL
Sbjct: 191 PNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNTLINGYCRSSKFDLALDL 250
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M EK P+ S+N L+ G + ++E+ K+ EM++ + + T L+ GLC
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSRGKIEEGIKMAYEMIEIGCRFSEATCEILVDGLCR 310
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
E RVD+A L D+ V P + SL++ LC + A+ EE+ +
Sbjct: 311 EGRVDDACGLVIDLSNS-RVLPSGFDYGSLVEKLCGENKADRAMEMVEELWK 361
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y ++ KL D +++ +L + P I ++ ++ E A +EM
Sbjct: 336 YGSLVEKLCGENKADRAMEMVEELWKKGKT-PCFIACTTLVEGLRKSGRTEKASGFMEEM 394
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI----MEKYVSPDACSYNILMHGCVVS 169
+ + +FN LL + + DR TD + K PD +Y++L+ G
Sbjct: 395 MNAGILPDSVTFNLLLRDLCSS---DRSTDANSLRLLASSKGYEPDETTYHVLVSGFTKE 451
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
R ++ + +EML + + P + T+ L+ GL
Sbjct: 452 GRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGL 483
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y+ +I + + DE + + + + H + P ++ + +I + + L+ AL
Sbjct: 354 SLFVYNALINSMCKDGKLDEAESLFNNMGHKG-LFPNDVTYSILIDSFCKRGKLDVALHF 412
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+M+ ++ TV +++L++ GK+ LF +++ + P+ Y L+ G
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A++++ EM + + P TF LI GLC R+ EA KL +M+ +NV P+
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVE-WNVIPNEV 531
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ LI+G C G A +EMV + D
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 101/196 (51%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + + D+ + + ++ + +P + + + + +E A+Q+
Sbjct: 607 NVVTYTALINGLCKIGLMDKAELLCREMLA-SNSLPNQNTYACFLDYLTSEGNIEKAIQL 665
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
D + + TV ++N L+ G+I + L +++ +SPD SY+ +++
Sbjct: 666 HDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L++A K+++ ML R + P V + LIYG C+ + +A +L++DMMR VKP+
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMR-RGVKPNRA 783
Query: 229 VFASLIKGLCAVGELS 244
+ SLI G C + +S
Sbjct: 784 TYNSLIHGTCLMSSVS 799
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 60 KLGRAK----MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
KLG+ + +FDE+ I + LK P +I+ ++IS Y + L +A +++ EM+
Sbjct: 437 KLGKLRAAKSLFDEM--IANGLK------PNVVIYTSLISGYCKEGELHNAFRLYHEMTG 488
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
+ +F L++ + ++ LF +++E V P+ +YN+L+ G
Sbjct: 489 KGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVR 548
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-------RVYNVKPDA 227
A+++ DEM+++ L P T+ LI GLC RV EA + D+ + P+
Sbjct: 549 AFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNV 608
Query: 228 QVFASLIKGLCAVG 241
+ +LI GLC +G
Sbjct: 609 VTYTALINGLCKIG 622
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTR-------VVPEEIIFCNVISFYGRARLLEHA 106
Y +I+ L E ++ ++ L+ + + +P + + +I+ + L++ A
Sbjct: 568 YRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKA 627
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166
+ EM + N ++ L+ + + G I++ L ++ + + +YNIL+ G
Sbjct: 628 ELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGF 687
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R+++A +V M+ + P +++ T+IY C + EA+KL E M+ V PD
Sbjct: 688 CKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLN-RGVNPD 746
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ LI G C GEL+ A +++M+R ++
Sbjct: 747 TVAYNFLIYGCCVTGELTKAFELRDDMMRRGVK 779
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R ++ Y ++ L + + F+ +++++++ + VP E N++ + +
Sbjct: 279 KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI-EFGFVPSEAAVSNLVDGLRKKGNIG 337
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILM 163
A + +++ F V ++ +N L+N+M GK+D LF M K + P+ +Y+IL+
Sbjct: 338 SAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILI 397
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+L+ A +M + ++ T+ + +LI G C ++ A L ++M+ +
Sbjct: 398 DSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI-ANGL 456
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
KP+ ++ SLI G C GEL A EM I
Sbjct: 457 KPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGIS 492
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 94/201 (46%), Gaps = 11/201 (5%)
Query: 52 LHYDLII-TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L +DL+I T + + D + ++ +L D ++P+ V++ R R AL +F
Sbjct: 146 LGFDLLIQTYVQNRRELDGL--VVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLF 203
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVS 169
DE+ S ++ V + ++ ++ R ++ ME +YN+ + G +
Sbjct: 204 DEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKN 263
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR---VYNVKPD 226
+R+ +A ++ + + + L+ + T+ TL+ GLC +V+E + E+MM + P
Sbjct: 264 QRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLC---KVEE-FEAGEEMMNEMIEFGFVPS 319
Query: 227 AQVFASLIKGLCAVGELSLAL 247
++L+ GL G + A
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAF 340
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQR---------TVKSFNTLLNAMLTCGKIDRM 141
CN + G L++ +Q E+ V R +++ + +LN ++ +
Sbjct: 140 CNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMA 199
Query: 142 TDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200
LF +I+ + PD Y ++ + A +V M ++ T+ I G
Sbjct: 200 LHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRG 259
Query: 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
LC RV EA+++K +++ ++ D + +L+ GLC V E EEM+ IE
Sbjct: 260 LCKNQRVWEAVEIK-NLLSYKGLRADVGTYCTLVLGLCKVEEFEAG----EEMMNEMIE 313
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFD 180
V ++ L+N + G +D+ L + M S P+ +Y + +E A ++ D
Sbjct: 608 VVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHD 667
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+L+ L T VT+ LI G C R+ EA ++ +M+ + PD ++++I C
Sbjct: 668 VLLEGFLANT-VTYNILIRGFCKLGRIQEAAEVLVNMIDS-GISPDCISYSTIIYEYCRR 725
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
G+L A+ E M+ + D
Sbjct: 726 GDLKEAIKLWESMLNRGVNPDT 747
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
+ P+ P Y Y+ ++ L AK ++E ++++ ++ + R P E+ F I + +
Sbjct: 183 SMPVAPDTYT---YNTVLKGLCIAKKWEEAEELMAEMIRN-RCPPNEVTFATQIRSFCQN 238
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LL+ A+Q+ D+M + V ++TL+N G +D+ DL M P+ YN
Sbjct: 239 GLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM--LCKPNTVCYN 296
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G ++ R ED ++ EM+++ P TF LI LC VD A+++ E M +
Sbjct: 297 AALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEK- 355
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y +PD + +I L G + AL MV
Sbjct: 356 YGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV 389
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 100/203 (49%), Gaps = 6/203 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVF 110
L ++ ++ RA+ + + +++ Q+ + D ++ E+ F +I + L+ +A QVF
Sbjct: 395 LGFNAVLKGFCRAERWHDASELIAQMFRDDCPLI--EMTFNILIDTLCQNGLVNYATQVF 452
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170
++M + + ++++LLN G ++ LF+ M PD SYN ++ G +
Sbjct: 453 EQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMP--CKPDIFSYNAVLKGLCRAA 510
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R EDA ++ EM+ + P VTF LI LC + VD A+++ E M Y PD +
Sbjct: 511 RWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPN-YGSTPDIFTY 569
Query: 231 ASLIKGLCAVGELSLALGFKEEM 253
+LI G G L AL M
Sbjct: 570 NALINGFSEQGRLDDALKLLSTM 592
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 96/198 (48%), Gaps = 4/198 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+ + L A+ ++++ +++ ++ P E F +IS + L++ A++V
Sbjct: 291 NTVCYNAALKGLCIAERWEDIGELMAEMVRKG-CSPNEATFSMLISSLCQNNLVDSAVEV 349
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
++M + + ++N ++N++ G++D L M PDA +N ++ G +
Sbjct: 350 LEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSM--VCKPDALGFNAVLKGFCRA 407
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R DA ++ +M + +TF LI LC V+ A ++ E M R Y PD
Sbjct: 408 ERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPR-YRCTPDIVT 466
Query: 230 FASLIKGLCAVGELSLAL 247
++SL+ G G + +A+
Sbjct: 467 YSSLLNGFSEQGLVEVAI 484
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82
++A+QLF+ + P KP ++ Y+ ++ L RA +++ +++ ++
Sbjct: 481 EVAIQLFR----------SMPCKP---DIFSYNAVLKGLCRAARWEDAGELIAEMVGKD- 526
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
P E+ F +I+ + L++ A++V ++M ++ + ++N L+N G++D
Sbjct: 527 CPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDAL 586
Query: 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
L M PDA SYN + G + R +DA ++ EML+ + P VTF
Sbjct: 587 KLLSTMS--CKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+++ Y R L A +V + V ++ L++ G++D L M V
Sbjct: 130 LVAGYCRDGRLADAERVLGAARATGAANVV-TYTALIDGYCRSGRLDDALRLIASMP--V 186
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
+PD +YN ++ G ++++ E+A ++ EM++ R P VTF T I C +D A++
Sbjct: 187 APDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQ 246
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
L + M R Y PD ++++LI G G + AL M+
Sbjct: 247 LLDQMPR-YGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML 287
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F T + + G +DR L M +Y +PD Y+ L++G ++ A + + M
Sbjct: 227 TFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM 286
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
L +P V + + GLC+ R ++ +L +M+R P+ F+ LI LC
Sbjct: 287 L---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVR-KGCSPNEATFSMLISSLCQNNL 342
Query: 243 LSLALGFKEEMVRNKIEMD 261
+ A+ E+M + E D
Sbjct: 343 VDSAVEVLEQMEKYGCEPD 361
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
S N L+ + G++ + ++ + DA S+N L+ G RL DA +V
Sbjct: 92 SCNILIKKLCATGRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLGAA- 150
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +VT+ LI G C R+D+AL+L M V PD + +++KGLC +
Sbjct: 151 RATGAANVVTYTALIDGYCRSGRLDDALRLIASM----PVAPDTYTYNTVLKGLCIAKKW 206
Query: 244 SLALGFKEEMVRNK 257
A EM+RN+
Sbjct: 207 EEAEELMAEMIRNR 220
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 91 CNVI-SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIM 148
CN+I + + ++ A +F+ + V+ V ++N L+ + G R D++ +++
Sbjct: 304 CNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEML 363
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K + P +YN ++ G RLE+A ++ D M+ P +VTF TLI G C RVD
Sbjct: 364 CKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVD 423
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ L+L +M + + D + +LI G C VG+L+ A EEMV + +
Sbjct: 424 DGLELFSEMCQ-RGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGV 472
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 4/195 (2%)
Query: 70 VQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
V Q L Q V P+ I+ CN +++ LE AL++F + + N +
Sbjct: 249 VAQDLFQEMISNGVSPD-IVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNII 307
Query: 129 LNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+N M K+D DLF + V D +YNIL+ V A ++ EML + +
Sbjct: 308 INGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGI 367
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P+ VT+ +++ G C + R++EA ++ + M+ PD F++LIKG C G + L
Sbjct: 368 IPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS-EGCSPDVVTFSTLIKGYCKAGRVDDGL 426
Query: 248 GFKEEMVRNKIEMDA 262
EM + + D
Sbjct: 427 ELFSEMCQRGLVADT 441
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 88/178 (49%), Gaps = 2/178 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P+ +++ Y+++I + F + I ++ ++P + + +++ + +
Sbjct: 328 PVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLC-KGIIPSTVTYNSMVDGFCKQNR 386
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
LE A Q+ D M S V +F+TL+ G++D +LF M ++ + D +YN
Sbjct: 387 LEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNA 446
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+HG L A +F+EM+ + P +TF +++ GLC + + + L + ED+ +
Sbjct: 447 LIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQK 504
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMH 164
A +F EM + V ++N +++ + GK L + M E+ + PD +++ L++
Sbjct: 99 AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALIN 158
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
V ++ A +++ EML+R + PT +T+ ++I G C R+++A K D+M
Sbjct: 159 AFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDA-KHMFDLMVSKGCS 217
Query: 225 PDAQVFASLIK-----------GLCAVGELSLALGFKEEMVRNKIEMD 261
PD +LI G C VG +++A +EM+ N + D
Sbjct: 218 PDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPD 265
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 13/164 (7%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA----------- 131
+ P I + ++I + + LE A +FD M S + + NTL++
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHG 240
Query: 132 MLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
G ++ DLFQ ++ VSPD + N L+ G + +LE A ++F K ++
Sbjct: 241 FCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLD 300
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
T +I G+C +VDEA L + + V V+ D + LI
Sbjct: 301 TATCNIIINGMCKGNKVDEAWDLF-NSLPVNGVETDVVTYNILI 343
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ +VTF TL+ GLC E RV +AL L + M+ + +PDA + +++ G+C +G
Sbjct: 1 MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGH-QPDAVTYGTIVNGMCKLG 59
Query: 242 ELSLALGFKEEMVRNKIE 259
+ AL +M ++I+
Sbjct: 60 DTVSALNMLRKMDESQIK 77
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E + ++ LM+G R+ A + D M++ QP VT+GT++ G+C
Sbjct: 1 MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
AL + M +K + ++++++ LC G
Sbjct: 61 TVSALNMLRKMDE-SQIKANVVIYSAIVDRLCKDG 94
>gi|297836596|ref|XP_002886180.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332020|gb|EFH62439.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 421
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 20/222 (9%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S LR DP AL ++K+ + + RY + +L + +L +++ F +++ +
Sbjct: 34 SKLRKVHDPDKALAIYKS-----VSNNSSSPLSSRYAM---ELTVQRLAKSQRFSDIEAL 85
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ K++ ++ E +I YGRA + +HA+++F+EM RTV SFN LL A L
Sbjct: 86 IESHKNNPKI-KTETFLSTLIRSYGRASMFDHAMKMFEEMDQIGTPRTVVSFNALLAACL 144
Query: 134 TCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+R+ LF +I ++Y ++PD SY +L+ S E A ++ +M + ++ T
Sbjct: 145 HSDLFERVPQLFDEIPQRYNNITPDKVSYGMLIKSYCDSGSPEKAMEIMRDMEVKGVEVT 204
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
++ F T++ L VD A L +M+ VYNV+
Sbjct: 205 IIAFTTILGSLYKNGLVDVAESLWTEMVNKGCELDNTVYNVR 246
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 100/235 (42%), Gaps = 41/235 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++ ++ ++ + +F+ V Q+ ++ + + P+++ + +I Y + E A++
Sbjct: 132 TVVSFNALLAACLHSDLFERVPQLFDEIPQRYNNITPDKVSYGMLIKSYCDSGSPEKAME 191
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----------------------- 145
+ +M V+ T+ +F T+L ++ G +D L+
Sbjct: 192 IMRDMEVKGVEVTIIAFTTILGSLYKNGLVDVAESLWTEMVNKGCELDNTVYNVRLMNAA 251
Query: 146 --------QIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ME+ S PD SYN LM V + +A KV++ + QP T
Sbjct: 252 KESPERVEELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMGEAKKVYEGLE----QPNAAT 307
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
F TLI+ LC+ D+ L + + V+ + PD + L +GL + A G
Sbjct: 308 FRTLIFRLCINGLYDQGLTVFKKSAIVHKI-PDFKTCKHLTEGLVKNNRMEDARG 361
>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 5/211 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+DL++ +A M E + Q+ + VP +I CN +++ ++ + V+ E
Sbjct: 185 FDLLLKAYVKAGMIKEGFRTFMQIL-EVGYVPS-VIACNYLLNGLLKSNHIHLCWHVYGE 242
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M V +FN L + G ID+M D + ME+ PD +YN L++G R
Sbjct: 243 MGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGR 302
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L DA+ ++ M +R + P LV++ L+ GLC E RV EA +L M+ + PD +
Sbjct: 303 LSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVH-RGLNPDVVSYN 361
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+LI G C G++ + EM+ N I D+
Sbjct: 362 TLICGYCKEGKMLESKSLLYEMIGNGIFPDS 392
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++ L + E Q+LH++ H + P+ + + +I Y + + + +
Sbjct: 321 DLVSYTALMNGLCKEGRVREAHQLLHRMVHRG-LNPDVVSYNTLICGYCKEGKMLESKSL 379
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGC 166
EM + + L+ G + +L +EK+ +SPD Y+ L+
Sbjct: 380 LYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDI--YDYLVASL 437
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
R A + + M +R P + + LI LC V +AL LK +++ V N+ P+
Sbjct: 438 CEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIV-VGNINPN 496
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI+ LC +G A EEM+ ++ D
Sbjct: 497 LLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPD 531
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 91/193 (47%), Gaps = 9/193 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I + E + +L+++ + + P+ +I Y + L AL +
Sbjct: 356 DVVSYNTLICGYCKEGKMLESKSLLYEMIGNG-IFPDSFTCRVLIQGYRKEGWLISALNL 414
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR----MTDLFQIMEKYVSPDACSYNILMHG 165
E+ F V + ++ L+ ++ C + DR T L ++ ++ P YN L+
Sbjct: 415 VVELEKFGVSISPDIYDYLVASL--CEE-DRPFAAKTLLERMSQRGYIPHVEIYNKLIES 471
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ DA + E++ + P L+T+ LI LC R EA KL E+M+ + ++P
Sbjct: 472 LCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLH-FGLQP 530
Query: 226 DAQVFASLIKGLC 238
D ++ ++I G C
Sbjct: 531 DPEICRAMIHGYC 543
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 85 PEEIIFCNVISFY-GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
P+ + + +I+ Y GR RL + A ++ M V + S+ L+N + G++
Sbjct: 285 PDIVTYNTLINGYCGRGRLSD-AFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQ 343
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
L M + ++PD SYN L+ G ++ ++ + EM+ + P T LI G
Sbjct: 344 LLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYR 403
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E + AL L ++ + + V ++ L+ LC
Sbjct: 404 KEGWLISALNLVVELEK-FGVSISPDIYDYLVASLC 438
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 7/213 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N++ Y+ II L + + E + ++ T+ + +I N + + L E
Sbjct: 246 KNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI--TKGISPDIFTYNSL-IHALCNLCE 302
Query: 105 --HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
H + +EM + + V F+T+++A+ G I D+ +M ++ V PD +Y
Sbjct: 303 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 362
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM G + +++A KVFD M+ + P + ++ LI G C R+D+A+ L E M +
Sbjct: 363 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ-MSLQ 421
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ D + +LI GLC VG L A+ EMV
Sbjct: 422 GLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 454
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 5/204 (2%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSS 115
++T + + K + V + Q+ D+ +P ++ N+ I+ + R L +A V ++
Sbjct: 118 LLTSIAKMKHYSTVLSLSTQM--DSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLK 175
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLED 174
Q +FNTL+ + GKI LF + + + PD +Y LM+G
Sbjct: 176 LGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSA 235
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A ++ M+++ +P ++ + T+I LC + +V EA L +M+ + PD + SLI
Sbjct: 236 AIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMI-TKGISPDIFTYNSLI 294
Query: 235 KGLCAVGELSLALGFKEEMVRNKI 258
LC + E EMV +KI
Sbjct: 295 HALCNLCEWKHVTTLLNEMVNSKI 318
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 2/154 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
L+ AL F+ M + + F LL ++ + L M+ + + PD + NI
Sbjct: 93 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 152
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++ RRL A+ V ++LK QP TF TLI GLC+E ++ EAL L + +
Sbjct: 153 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG-E 211
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+PD + +L+ GLC VG S A+ MV+
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQ 245
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + AL +FD+ Q V ++ TL+N + G L
Sbjct: 180 PDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRL 239
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ M +K P+ +YN ++ R++ +A+ +F EM+ + + P + T+ +LI+ LC
Sbjct: 240 LRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCN 299
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L +M+ + P+ VF++++ LC G +++A + M++ +E D
Sbjct: 300 LCEWKHVTTLLNEMVN-SKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD 356
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 2/165 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
V P+ + + ++ + ++ A++VFD M V+S+N L+N ++D+
Sbjct: 353 VEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAM 412
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L + M + + D +YN L+HG RL+ A +F EM+ P LVT+ L+ L
Sbjct: 413 GLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 472
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
C + EA+ L + + N+ D V+ I G+C GEL A
Sbjct: 473 CKNHHLAEAMVLLK-AIEGSNLDADILVYNIAIDGMCRAGELEAA 516
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 111/209 (53%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++I + + DEV + +++ + P + + VI + L+ A+ F++M
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQG-LTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ V + +L++A+ T K ++ +L F+I+++ ++P+ +N ++ R+
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRV 303
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++ K+FD + + P ++T+ TLI G CL ++D A+KL M+ V +KPD+ +++
Sbjct: 304 IESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSV-GLKPDSVTYST 362
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
LI G C + + AL +EM N + D
Sbjct: 363 LINGYCKINRMEDALALFKEMESNGVNPD 391
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 113/240 (47%), Gaps = 40/240 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ II L + D+ H++ D RV P+ + + ++I+ +A+ ++ A++V
Sbjct: 10 DVVSYNTIIDGLFKEGDVDKAYITYHEML-DRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
M V ++N++++ + G+ ++ +F+ M + PD +YN LM
Sbjct: 69 LTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-----------LELRVDEALKLKEDM 217
+ + +A K+FD M+KR L+P + T+GTL++G L L V ++L +
Sbjct: 125 NGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHV 184
Query: 218 -----------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
MR + P+A + ++I GLC +G L A+ E+M+
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 91/185 (49%), Gaps = 4/185 (2%)
Query: 77 LKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
+ D R P+ + + +I + ++ A + EM V ++N+++ A+
Sbjct: 1 MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQ 60
Query: 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
+DR ++ +M V P+ +YN +MHG S + E A +F +M ++P +VT+ +
Sbjct: 61 AMDRAMEVLTVM---VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNS 117
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
L+ LC + EA K+ + M++ +KPD + +L+ G + G L MV+N
Sbjct: 118 LMDYLCKNGKCTEARKIFDSMVK-RGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQN 176
Query: 257 KIEMD 261
+++D
Sbjct: 177 GMQLD 181
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQI 147
+F +I Y + ++ + VF +M + ++ T+++ + G++D M + Q+
Sbjct: 184 VFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQM 243
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
++K ++P+ Y L+H + E A ++ E+L + + P +V F T++ LC E RV
Sbjct: 244 IDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRV 303
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
E+ KL D++ V PD +++LI G C G++ A+ MV ++ D+
Sbjct: 304 IESKKLF-DLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDS 357
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 38 NTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--S 95
N E K N++ Y +I L +++ ++++ ++ D + P I+F N I S
Sbjct: 239 NFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEIL-DQGINPN-IVFFNTILDS 296
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSP 154
R++E + ++FD + V V +++TL++ GK+D L M + P
Sbjct: 297 LCKEGRVIE-SKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKP 355
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
D+ +Y+ L++G R+EDA +F EM + P ++T+ +++GL
Sbjct: 356 DSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGL 402
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q + P N++ ++ I+ L + E +++ L H V P+ I + +I Y A
Sbjct: 281 QGINP---NIVFFNTILDSLCKEGRVIESKKLFDLLGH-IGVNPDVITYSTLIDGYCLAG 336
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD---LFQIMEK-YVSPDAC 157
++ A+++ M S ++ +++TL+N KI+RM D LF+ ME V+PD
Sbjct: 337 KMDGAMKLLTGMVSVGLKPDSVTYSTLINGYC---KINRMEDALALFKEMESNGVNPDII 393
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+YNI++HG +RR A +++ + + Q L T+ ++
Sbjct: 394 TYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL 434
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 107/205 (52%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y+ II + + K+ ++ + ++ R+ P+ + +I+ + L+ A+ +
Sbjct: 240 NLVMYNTIIDSMCKDKLDNDAFDLYSEMVS-KRIFPDVNTYNALINGFCIVGKLKDAIGL 298
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
F++M+S N+ V +FN L++A G++ + L +M++ + PD +YN LM +
Sbjct: 299 FNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCL 358
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ A +F+ M R + + ++ +I C VD+A+KL ++M + P+
Sbjct: 359 VNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHH-KQIFPNVI 417
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
++SLI GLC G +S AL +EM
Sbjct: 418 TYSSLIDGLCKSGRISYALELNDEM 442
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y ++I + + KM D+ ++ ++ H ++ P I + ++I ++ + +AL++
Sbjct: 380 NVRSYSIMINRFCKIKMVDQAMKLFKEMHH-KQIFPNVITYSSLIDGLCKSGRISYALEL 438
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
DEM Q D +T Q+ ++ + P+ +Y IL+ G
Sbjct: 439 NDEMHDRGQQP------------------DIITLTRQLKDQGIRPNMFTYTILIDGLCKG 480
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RLEDA +F+++L + T+ T+ +I+G C + DEA+ L M + P+A
Sbjct: 481 GRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCI-PNAVT 539
Query: 230 FASLIKGL 237
+ +I+ L
Sbjct: 540 YEIIIRSL 547
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMM--RVYNVKPDAQVFASLIKGLCAVGELS 244
LQP LV + T+I +C + ++A L +M+ R++ PD + +LI G C VG+L
Sbjct: 237 LQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIF---PDVNTYNALINGFCIVGKLK 293
Query: 245 LALGFKEEMVRNKIEMDA 262
A+G +M I D
Sbjct: 294 DAIGLFNKMTSENINPDV 311
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 3/170 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKY 151
V + GR E AL + +M V ++NTL+ A G++D L +M E
Sbjct: 197 VRALCGRGHRKE-ALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGG 255
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
+ P+ ++N +++G + ++EDA KVFDEM++ L P V++ TL+ G C EAL
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEAL 315
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +M + + PD F SLI +C G L A+ +M ++M+
Sbjct: 316 SVFAEMTQ-KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMN 364
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ ++ RA D ++++ ++ + + P + F ++++ +A +E A +V
Sbjct: 224 NVVTYNTLVAAFFRAGEVDGAERLVGMMR-EGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
FDEM + S+NTL+ G +F ++ +K + PD ++ L+H
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 342
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A + +M +R LQ VTF LI G C + +D+AL L M+ +KP
Sbjct: 343 AGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDAL-LAVRGMKQCRIKPSVV 401
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G C VG + A EM ++ D
Sbjct: 402 CYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 7/196 (3%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N + + +I + D+ + +K R+ P + + +I+ Y ++
Sbjct: 359 RGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQ-CRIKPSVVCYNALINGYCMVGRMD 417
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNI 161
A ++ EM + ++ V +++T+++A C D + Q++EK V PDA +Y+
Sbjct: 418 EARELLHEMEAKGLKPDVVTYSTIISAY--CKNCDTHSAFELNQQMLEKGVLPDAITYSS 475
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ +RL DA +F M+K LQP T+ +LI G C E V+ AL L + M++
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKA- 534
Query: 222 NVKPDAQVFASLIKGL 237
V PD ++ LI GL
Sbjct: 535 GVLPDVVTYSVLINGL 550
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 100/199 (50%), Gaps = 3/199 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y++++ L E IL ++ P + + +++ + RA ++ A ++
Sbjct: 189 NVYTYNILVRALCGRGHRKEALSILRDMR-GAGCGPNVVTYNTLVAAFFRAGEVDGAERL 247
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
M ++ + +FN+++N M GK++ +F +++ + ++PD SYN L+ G
Sbjct: 248 VGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCK 307
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A VF EM ++ + P +VTF +LI+ +C ++ A+ L MR ++ +
Sbjct: 308 AGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ-MRERGLQMNEV 366
Query: 229 VFASLIKGLCAVGELSLAL 247
F +LI G C G L AL
Sbjct: 367 TFTALIDGFCKKGFLDDAL 385
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 28/230 (12%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I DE +++LH+++ + P+ + + +IS Y + A ++ +M
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKG-LKPDVVTYSTIISAYCKNCDTHSAFELNQQM 461
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTD---LFQIMEKY-VSPDACSYNILMHGCVVS 169
V ++++L+ + CG+ R++D LF+ M K + PD +Y L+ G
Sbjct: 462 LEKGVLPDAITYSSLIRVL--CGE-KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE 518
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY-------N 222
+E A + D+M+K + P +VT+ LI GL R EA +L + ++Y N
Sbjct: 519 GNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL---LFKLYHEDPIPAN 575
Query: 223 VKPDA----------QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K DA + +L+KG C G ++ A + M+ +D
Sbjct: 576 TKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDG 625
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+V ++N +L A+ ++ V+P+ +YNIL+ ++A +
Sbjct: 155 SVLAYNAVLLALSDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILR 214
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M P +VT+ TL+ VD A +L MMR +KP+ F S++ G+C
Sbjct: 215 DMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLV-GMMREGGLKPNLVTFNSMVNGMCKA 273
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
G++ A +EMVR + D
Sbjct: 274 GKMEDARKVFDEMVREGLAPDG 295
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTD 143
P+E + ++I + + +E AL + D+M V V +++ L+N + + ++
Sbjct: 503 PDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQL 562
Query: 144 LFQIMEKYVSPDACSYNILMHGC---------------VVSRRLEDAWKVFDEMLKRRLQ 188
LF++ + P Y+ LMH C + + +A KV+ ML R
Sbjct: 563 LFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 622
Query: 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+ LI+G C V +AL + M++ P++ SLI+GL
Sbjct: 623 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQ-GGFAPNSTSTISLIRGL 670
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 38/249 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L +A+M D + + + D V P + +I Y + +Q+
Sbjct: 201 NVVTYTTVIDGLCKAQMVDRAKGVFQHMI-DKGVRPNNHTYTCLIHGYLSIGKWKEVVQM 259
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHG--- 165
EMS+ +Q + LL+ + G+ ++F ++ K + P+ Y IL+HG
Sbjct: 260 LQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYAT 319
Query: 166 ------------------------------CVVSRR--LEDAWKVFDEMLKRRLQPTLVT 193
C +++ +++A +FD+M ++RL P +VT
Sbjct: 320 EGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVT 379
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+G LI LC RVD+A+ LK + M + PD VF+SL+ GLC V + A E+
Sbjct: 380 YGALIDALCKLGRVDDAV-LKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEV 438
Query: 254 VRNKIEMDA 262
+ I +D
Sbjct: 439 LDQGIRLDT 447
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-I 147
+ CN+ R++E A ++ D M V+ V S+NTL++ G+ID L I
Sbjct: 453 LMCNLCR---EGRVME-AQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVI 508
Query: 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ + PD +YN L+HG +RR++DA+ +F EML + L P +VT+ T+++GL R
Sbjct: 509 VSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRF 568
Query: 208 DEALKLKEDMMRVYNVKPDAQVFAS--LIKGLC 238
EA KE + + N + ++ +I GLC
Sbjct: 569 SEA---KELYLSMINSRTQMNIYTYNIIINGLC 598
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 105/209 (50%), Gaps = 3/209 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++++ + M DE I +++ R+ P + + +I + ++ A+ F++M
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIFDKMRQQ-RLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + F++L+ + T K ++ +LF +++++ + D +N LM R+
Sbjct: 404 IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A ++ D ML+ ++P ++++ TL+ G CL R+DEA KL + ++ + +KPD + +
Sbjct: 464 MEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSI-GLKPDKVTYNT 522
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ G C + A EM+ + D
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPD 551
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 5/212 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
+ ++ L AK DE IL + + P+ + ++ + + E AL++ M
Sbjct: 131 FSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMM 190
Query: 114 SSFNVQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVS 169
+ V ++ T+++ + +DR +FQ M +K V P+ +Y L+HG +
Sbjct: 191 ADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSI 250
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
+ ++ ++ EM LQP + L+ LC R EA + + ++R +KP+ +
Sbjct: 251 GKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIR-KGIKPNVTI 309
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ L+ G G LS F + MV N + D
Sbjct: 310 YGILLHGYATEGSLSEMHSFLDLMVGNGVSPD 341
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAM--LTCGKIDRMT-DLFQIMEK----YVSPD 155
L AL++FDEM + +V++FN LL A+ C + LF M + V+P
Sbjct: 32 LNDALKLFDEMLTHARPASVRAFNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPS 91
Query: 156 ACSYNILMHGCVVS-RRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEALK 212
+ +Y IL+ GC RL+ + F +LK R+ T++ F L+ GLC RVDEA
Sbjct: 92 SFTYTILI-GCFCRMGRLKHGFAAFGLILKTGWRVNDTVI-FSQLLKGLCDAKRVDEATD 149
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLC 238
+ M + PD ++ L+KG C
Sbjct: 150 ILLRRMPEFGCTPDVFSYSILLKGFC 175
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R +++ Y+ ++ DE ++L + + P+++ + ++ Y +AR ++ A
Sbjct: 479 RPDVISYNTLVDGHCLTGRIDEAAKLLDVIV-SIGLKPDKVTYNTLLHGYCKARRIDDAY 537
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+F EM + V ++NT+L+ + G+ +L+ ++ + +YNI+++G
Sbjct: 538 SLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGL 597
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +++A+K+F + + LQ + T +I L R ++A+ L + Y + PD
Sbjct: 598 CKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFA-TISAYGLVPD 656
Query: 227 AQVFASLIKGLCAVGEL 243
+ + + + L G L
Sbjct: 657 VETYCLIAENLIKEGSL 673
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I R ++ A +VF +M SF V ++NTL+N + ++ R +L
Sbjct: 176 PDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCEL 235
Query: 145 FQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F+ ++ SPD +Y ++ G S ++++A +F+EM++ +QP ++TF LI G
Sbjct: 236 FKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFG 295
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ EA + M ++ D F SLI G C G+++ L F M
Sbjct: 296 KIGNIAEAEAMYRKMA-YFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVM 345
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 100/209 (47%), Gaps = 6/209 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L++ L + D V + + D + P+ + ++++ +A + ++ E+
Sbjct: 76 YNLLMRSLCQMGHHDLVNIVFDYMGSDGHL-PDSKLLGFLVTWMAQASDFDMVKKLLAEV 134
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ---IMEKYVSPDACSYNILMHGCVVSR 170
V+ +N LL+ ++ ++ LF+ +M+ PD ++NIL+ G
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQS--PPDTWTFNILIRGLCRVG 192
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
++ A++VF +M P +VT+ TLI GLC V +L +++ + PD +
Sbjct: 193 GVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTY 252
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIE 259
S+I G C G++ A EEM+R+ I+
Sbjct: 253 TSIISGFCKSGKMKEASNLFEEMMRSGIQ 281
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I L +A ++ +++ + P+ + + ++IS + ++ ++ A +
Sbjct: 212 DVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNL 271
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F+EM +Q V +FN L++ G I +++ M + S D ++ L+ G
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCR 331
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ K ++ M R + PT+ T+ LI LC E R++EA ++ ++ P
Sbjct: 332 AGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFL-GQIKNSSIIPKPF 390
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ +I G C G + +EM + + D
Sbjct: 391 MYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPD 423
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 93/193 (48%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++++I G+ E + + ++ + + + F ++I Y RA + H L+
Sbjct: 283 NVITFNVLIDGFGKIGNIAEAEAMYRKMAY-FDCSADVVTFTSLIDGYCRAGQVNHGLKF 341
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVV 168
++ M + NV TV ++ L+NA+ +++ D L QI + P YN ++ G
Sbjct: 342 WNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCK 401
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +++ + EM ++R P VTF LI G C++ R+ EA+ + M+ PD
Sbjct: 402 AGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT-RCAPDNI 460
Query: 229 VFASLIKGLCAVG 241
SLI L G
Sbjct: 461 TVNSLISCLLKAG 473
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 11/211 (5%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E QP ++ + +II +A + +++ V P E + V++ +
Sbjct: 2 ECQP------TVVTWTIIIDGFCKANQLKQALACFEKMRE--FVAPNERTYNVVVNGLCK 53
Query: 100 ARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDA 156
ARL A +V EM +V + +++T++N G++DR ++ + + ++PD
Sbjct: 54 ARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDV 113
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+Y ++ G +++ A ++ EM + ++P TF LI G C +VDEALKL ++
Sbjct: 114 VTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKE 173
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
++ + KPD + +LI G C G L A+
Sbjct: 174 ILTSSSWKPDVVTYTALIDGFCKSGNLEKAM 204
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 9/216 (4%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
+ Y ++ A +E + +L +K + P+ + + V++ Y RA+ A +
Sbjct: 325 ITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQ 384
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSR 170
EM + NV ++++L++ + G++D ++ + M K V P ++N ++
Sbjct: 385 EMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLG 444
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-------MRVYNV 223
+++AWK+ M L+P +VT+ TL+ G R++ A +L E M N+
Sbjct: 445 DMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANL 504
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
P+ Q F++LI+GLC E+ A+ EE+ + E
Sbjct: 505 VPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECE 539
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 105/212 (49%), Gaps = 4/212 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L A D + ++ ++ T P+ + + ++ Y R +E A Q+
Sbjct: 253 NVVTYTTLIHGLCAAHKVDAARLLMDEMTA-TCCPPDTVSYNALLDGYCRLGRIEEAKQL 311
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCV 167
F EM++ + ++ L+ +++ L + M+ + PD +Y+I++ G
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 371
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++R +A + EM+ R + P VT+ +LI GLC RVD A+++ ++M+ V+P
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVN-KRVEPSV 430
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
F S+I LC +G++ A M + +E
Sbjct: 431 GTFNSVIGALCRLGDMDEAWKLLVAMAAHGLE 462
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 3/206 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +I + D +IL ++ + P+ + + +V+ R ++ A ++
Sbjct: 76 DLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEM 135
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
EM V+ +F+ L+ K+D L++ + PD +Y L+ G
Sbjct: 136 VREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFC 195
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S LE A K+ M R+ P +VT+ +L++GLC +D+AL L M V P+
Sbjct: 196 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV-PNV 254
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+ +LI GLCA ++ A +EM
Sbjct: 255 VTYTTLIHGLCAAHKVDAARLLMDEM 280
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 109/249 (43%), Gaps = 37/249 (14%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
++ +++ Y +I ++ ++ ++L ++ + VP + + +++ +A L+ A
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEG-RKCVPNVVTYSSLLHGLCKAGDLDQA 238
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-DACSYNILMHG 165
L +F M+S V ++ TL++ + K+D L M P D SYN L+ G
Sbjct: 239 LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDG 298
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-------- 217
R+E+A ++F EM + P +T+ L+ G C R++EA L E+M
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDP 358
Query: 218 ---------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
M NV P+A ++SLI GLC G + A+
Sbjct: 359 DVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVL 418
Query: 251 EEMVRNKIE 259
+ MV ++E
Sbjct: 419 KNMVNKRVE 427
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
Query: 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
Q TV ++ +++ ++ + F+ M ++V+P+ +YN++++G +R A++V
Sbjct: 4 QPTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEV 63
Query: 179 FDEML-KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
EM + + P LVT+ T+I G C + +D A ++ +M+ + PD + S++ GL
Sbjct: 64 LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123
Query: 238 CAVGELSLALGFKEEMVRNKIEMD 261
C G++ A EM +E D
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPD 147
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 94/173 (54%), Gaps = 5/173 (2%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + +A L+ AL F++M F V +++N ++N + + ++
Sbjct: 5 PTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEV 63
Query: 145 FQIME--KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGL 201
+ M K V+PD +Y+ +++G ++ A ++ EM+ R + P +VT+ +++ GL
Sbjct: 64 LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
C + ++D A ++ +M ++ V+PD F++LI G C ++ AL +E++
Sbjct: 124 CRDGKMDRACEMVREM-KLKGVEPDKFTFSALITGWCNARKVDEALKLYKEIL 175
>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 500
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 10/156 (6%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT--CGKIDRMTDLFQIMEKYVSPDACSYN 160
L H+L +M + T ++N LL A + ID LF+ + K PDACSYN
Sbjct: 168 LAHSL--LADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIPK---PDACSYN 222
Query: 161 ILMHG-CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
L+ G C SRR+E A ++F EM++ + PT+VT+ T+I L E +D+AL++ ++M R
Sbjct: 223 TLIDGLCRRSRRVE-AQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGR 281
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+ P+ ++SLI GLC G + AL E + +
Sbjct: 282 -RGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAK 316
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
R+R +E A ++F EM + TV ++ T++N + G +D ++F M + ++P+
Sbjct: 231 RSRRVE-AQELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVV 289
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y+ L+ G R A + + + K P + + ++I GLC E + EA+++ D
Sbjct: 290 TYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVL-DR 348
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
MR+ KPDA +F LI GLC G A + +EMV ++
Sbjct: 349 MRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQ 390
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 15/141 (10%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSP-----DACSYNILMHGCVVSRRLEDAWKVF 179
F TLL A + R D Q+ S A SY ++ G V L A +
Sbjct: 117 FLTLLRAFC---RTHRPLDALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPLAHSLL 173
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLEL--RVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
+M PT T+ L+ C + +D+A++L ++ KPDA + +LI GL
Sbjct: 174 ADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNI-----PKPDACSYNTLIDGL 228
Query: 238 CAVGELSLALGFKEEMVRNKI 258
C A EMV N I
Sbjct: 229 CRRSRRVEAQELFSEMVENGI 249
>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
Length = 647
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 36 PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
P+ E +P PF L Y L +F L L H R + V++
Sbjct: 195 PSPGELEP--PFLSLLRAYSRAHQPLAALHLFRSAPSAL-GLPHSARS------YTAVLA 245
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD 155
L A + +M + T ++N L+ A + + + D ++ PD
Sbjct: 246 ALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVP-IDDAVRVFRNIPKPD 304
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
ACSYN ++ G RL +A +F EM+ PT+VT+ TLI+ L E D+ALKL +
Sbjct: 305 ACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFD 364
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+M R + P+ ++SLI GLC G + A+ + MV+ +
Sbjct: 365 EMAR-RGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 405
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + VI R L A +F EM + TV ++ TL++ + D L
Sbjct: 303 PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKL 362
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++ + + P+ +Y+ L+ G R A ++ D M+K R P +T+ ++I GLC
Sbjct: 363 FDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCK 422
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E + +A+++ D MR+ KPDA +F LI GLC G A + +EM
Sbjct: 423 EGCLGQAMEIL-DRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEM 471
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 7/194 (3%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P K ++ Y+++ + LG+ K + + ++K + ++P+ + +IS YGR L
Sbjct: 420 PEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNG-IIPDVFTYNIMISSYGRVGL 478
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
++ A ++F+ M + + + V ++N+L+N + G +D LF+ M EK PD +Y+I
Sbjct: 479 VDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSI 538
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMR 219
L+ S ++E A +FDEM+ P +VT+ L+ CLE R +EA KL E M+
Sbjct: 539 LIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLD--CLERRGKTEEAHKLYE-TMK 595
Query: 220 VYNVKPDAQVFASL 233
+ PD+ ++ L
Sbjct: 596 QQGLIPDSITYSIL 609
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 2/152 (1%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKY 151
++ + R+R + QV++EM + + ++N LL+A+ G +D+ +F+ M +K+
Sbjct: 192 IVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKH 251
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
PDA +Y IL+ + R FDEM+ + L+ F T+I L VD+ +
Sbjct: 252 CVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVI 311
Query: 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ M+ + +P+ ++ + L G+L
Sbjct: 312 FVLSKMVE-NDCQPNQFTYSITLDILATEGQL 342
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K ++ ++ Y++++ L +A M D+ Q+ +K VP+ + +I G+A
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQ-KHCVPDAYTYTILIRMSGKAGRTS 273
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT-DLFQIMEKYVSPDACSYNILM 163
L FDEM S + +FNT++ A+ +D++ L +++E P+ +Y+I +
Sbjct: 274 KFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITL 333
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+L +V D + R + ++ ++ L+ LC EA + R++N
Sbjct: 334 DILATEGQLHRLNEVLD-ICSRFMNRSIYSY--LVKSLCKSGHASEAHNV---FCRMWNS 387
Query: 224 --KPDAQVFASLIKGLC 238
K D F S+++ LC
Sbjct: 388 HEKGDRDAFVSMLEVLC 404
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +LH + + +V + ++ V S G+ + + +FD+M + + V ++N +
Sbjct: 411 EAIDLLHMMP-EKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIM 469
Query: 129 LNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+++ G +D+ ++LF++ME PD +YN L++ L++A +F EM ++
Sbjct: 470 ISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGY 529
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
P + T+ LI +V+ A L ++M+
Sbjct: 530 DPDVFTYSILIECFGKSNKVEMACSLFDEMI 560
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+Y ++ + SR + ++V++EM ++ + + + L+ L VD+A ++ EDM
Sbjct: 188 TYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDM 247
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ + V PDA + LI+ G S L F +EMV
Sbjct: 248 KQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMV 283
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 34/235 (14%)
Query: 50 NLLHYDLIITKLGRAKMFDEV--------------QQILHQLKHDTRVVPEEI------- 88
NL+ ++ II LG+ KM D+V Q + + D ++
Sbjct: 290 NLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLNEVL 349
Query: 89 ----------IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
I+ ++ ++ A VF M + + + +F ++L + K
Sbjct: 350 DICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKT 409
Query: 139 DRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
DL +M EK + D YN++ +++ +FD+M + P + T+ +
Sbjct: 410 LEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIM 469
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA-LGFKE 251
I VD+A +L E +M + KPD + SLI L G+L A + FKE
Sbjct: 470 ISSYGRVGLVDKASELFE-VMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKE 523
>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
Length = 571
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 36 PNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95
P+ E +P PF L Y L +F L L H R + V++
Sbjct: 96 PSPGELEP--PFLSLLRAYSRAHQPLAALHLFRSAPSAL-GLPHSARS------YTAVLA 146
Query: 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD 155
L A + +M + T ++N L+ A + + + D ++ PD
Sbjct: 147 ALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVP-IDDAVRVFRNIPKPD 205
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
ACSYN ++ G RL +A +F EM+ PT+VT+ TLI+ L E D+ALKL +
Sbjct: 206 ACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKLFD 265
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
+M R + P+ ++SLI GLC G + A+ + MV+ +
Sbjct: 266 EMAR-RGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 306
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + VI R L A +F EM + TV ++ TL++ + D L
Sbjct: 204 PDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLAREACFDDALKL 263
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ++ + + P+ +Y+ L+ G R A ++ D M+K R P +T+ ++I GLC
Sbjct: 264 FDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGLCK 323
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
E + +A+++ D MR+ KPDA +F LI GLC G A + +EM
Sbjct: 324 EGCLGQAMEIL-DRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEM 372
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 105/206 (50%), Gaps = 11/206 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y ++T L R K F + ++ +++ + + P+ I+F +I+ + L+ A+++
Sbjct: 353 SLITYTTLVTALTRQKHFHSLLSLISKVEKNG-LKPDTILFNAIINASSESGNLDQAMKI 411
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F++M + T +FNTL+ GK++ + L +M ++ + P+ + NIL+
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM----MRVYNV 223
R++E+AW + +M ++P +VTF TL R+ EDM M V
Sbjct: 472 NQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYA---RIGSTCT-AEDMIIPRMLHNKV 527
Query: 224 KPDAQVFASLIKGLCAVGELSLALGF 249
KP+ + +++ G C G++ AL F
Sbjct: 528 KPNVRTCGTIVNGYCEEGKMEEALRF 553
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 7/184 (3%)
Query: 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132
I+ ++ H+ +V P +++ Y +E AL+ F M V + FN+L+
Sbjct: 518 IIPRMLHN-KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGF 576
Query: 133 LTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
L +D + ++ +ME++ V PD +++ LM+ ++ +++ +ML+ + P +
Sbjct: 577 LNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDI 636
Query: 192 VTFGTLIYGLCLELRVDEALKLKE--DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
F L G R E K K+ + MR + V+P+ ++ +I G C+ GE+ A+
Sbjct: 637 HAFSILAKGYA---RAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQV 693
Query: 250 KEEM 253
++M
Sbjct: 694 YKKM 697
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
+E + +++K + V P +F ++I + ++ +V D M F V+ V +F+T
Sbjct: 548 EEALRFFYRMK-ELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 128 LLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
L+NA + G + R +++ ++E + PD +++IL G + E A ++ ++M K
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFG 666
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++P +V + +I G C + +A+++ + M + + P+ + +LI G
Sbjct: 667 VRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGF 717
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P I + +++ R + L + ++ ++ FN ++NA G +D+ +
Sbjct: 352 PSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKI 411
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLC 202
F+ M E P A ++N L+ G +LE++ ++ D ML+ LQP T L+ C
Sbjct: 412 FEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWC 471
Query: 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ +++EA + M+ Y VKPD F +L K +G A
Sbjct: 472 NQRKIEEAWNIVYK-MQSYGVKPDVVTFNTLAKAYARIGSTCTA 514
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNIL 162
+ A +F+ + + ++ ++ TL+ A+ + L +EK + PD +N +
Sbjct: 336 QEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAI 395
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ S L+ A K+F++M + +PT TF TLI G +++E+ +L + M+R
Sbjct: 396 INASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEM 455
Query: 223 VKPDAQVFASLIKGLC 238
++P+ + L++ C
Sbjct: 456 LQPNDRTCNILVQAWC 471
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
V+S L+N ++ G+ +F ++E+ P +Y L+ + +
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
++ K L+P + F +I +D+A+K+ E M + KP A F +LIKG +
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKM-KESGCKPTASTFNTLIKGYGKI 437
Query: 241 GELSLALGFKEEMVRNKI 258
G+L + + M+R+++
Sbjct: 438 GKLEESSRLLDMMLRDEM 455
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214
D S LM+G + R ++A +F+ +++ +P+L+T+ TL+ L + L L
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + +KPD +F ++I G L A+ E+M
Sbjct: 378 SKVEK-NGLKPDTILFNAIINASSESGNLDQAMKIFEKM 415
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,701,984
Number of Sequences: 23463169
Number of extensions: 146612285
Number of successful extensions: 532642
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4541
Number of HSP's successfully gapped in prelim test: 5220
Number of HSP's that attempted gapping in prelim test: 443349
Number of HSP's gapped (non-prelim): 47513
length of query: 262
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 122
effective length of database: 9,074,351,707
effective search space: 1107070908254
effective search space used: 1107070908254
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)