BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037499
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGB|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 972
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P +P+R +I R K+++ ++ H L H +PEE ++ NV F L
Sbjct: 367 PTEPYR--------VILGDVRDKLYNTRERSRHLLAHGISDIPEEAVYTNVEQFLEPLEL 418
Query: 103 LEHAL-----QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+L +V + S + R V +F L + + DR TD+ + +++
Sbjct: 419 CYRSLCDCGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHL 473
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG------------KIDRMTDLF-QIMEKY 151
AL+++DE VQ + +N LL C + R D+F Q++
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLL---YVCSLAEAATESSPNPGLSRGFDIFKQMIVDK 100
Query: 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211
V P+ ++ V E A+ + +M +QP L ++G ++G C + D+A
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160
Query: 212 KLKEDM 217
++ M
Sbjct: 161 EVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 24/126 (19%)
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG------------KIDRMTDLFQ--IMEK 150
AL+++DE VQ + +N LL C + R D+F+ I++K
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLL---YVCSLAEAATESSPNPGLSRGFDIFKQXIVDK 100
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR---LQPTLVTFGTLIYGLCLELRV 207
V +A +G ++ +D FD + + + +QP L ++G ++G C +
Sbjct: 101 VVPNEA----TFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 208 DEALKL 213
D+A ++
Sbjct: 157 DKAYEV 162
>pdb|2JBR|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBR|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumanni
pdb|2JBS|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBS|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|A Chain A, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|B Chain B, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|C Chain C, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
pdb|2JBT|D Chain D, Structure Of The Monooxygenase Component Of P-
Hydroxyphenylacetate Hydroxylase From Acinetobacter
Baumannii
Length = 422
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
E R+ +A + E + + PD+++F + + A G +++LG E M+
Sbjct: 232 EYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLGIAERMI 282
>pdb|2Y7C|A Chain A, Atomic Model Of The Ocr-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534.
pdb|2Y7H|A Chain A, Atomic Model Of The Dna-Bound Methylase Complex From The
Type I Restriction-Modification Enzyme Ecoki (M2s1).
Based On Fitting Into Em Map 1534
Length = 464
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R+ L DL+ T+ + F V +L +L+H + P+++I RARL + AL
Sbjct: 280 RHKLQDGDLLFTRYNGSLEFVGVCGLLKKLQHQNLLYPDKLI---------RARLTKDAL 330
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137
+ E+ S + NAM+ C K
Sbjct: 331 PEYIEI--------FFSSPSARNAMMNCVK 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,266,072
Number of Sequences: 62578
Number of extensions: 275373
Number of successful extensions: 726
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 9
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)