BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037499
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 295 bits (754), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/262 (54%), Positives = 195/262 (74%), Gaps = 4/262 (1%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+ K S FRLASLLR + DP A++LF+NP+P N P +PFRY+LL YD+IITK
Sbjct: 1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
LG +KMFDE+ Q+L LK DTR+VP EIIFCNVI+F+GR +L AL +FDEM + QR
Sbjct: 57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
TVKS N+LL+A+L CG++++M + ++++ PDAC+YNIL+HGC S +DA K+FD
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFD 176
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
EM+K++++PT VTFGTLI+GLC + RV EALK+K DM++VY V+P ++ASLIK LC +
Sbjct: 177 EMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQI 236
Query: 241 GELSLALGFKEEMVRNKIEMDA 262
GELS A K+E KI++DA
Sbjct: 237 GELSFAFKLKDEAYEGKIKVDA 258
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 83/170 (48%), Gaps = 6/170 (3%)
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
++ ++ + I+ +IS +A + +EMS + ++N L+N C +
Sbjct: 250 YEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGF--CVEN 307
Query: 139 DRMTD---LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
D + L +++EK + PD SYN+++ ++ E+A +F++M +R P +++
Sbjct: 308 DSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYR 367
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+ GLC L+ +EA + ++M+ KP ++ LC G+L +
Sbjct: 368 IVFDGLCEGLQFEEAAVILDEML-FKGYKPRRDRLEGFLQKLCESGKLEI 416
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 138/243 (56%), Gaps = 13/243 (5%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP + L+ +DP+ AL LF + Q + FR++ Y +I KL ++
Sbjct: 45 KPWEEVPFLTDLKEIEDPEEALSLFH---------QYQEMG-FRHDYPSYSSLIYKLAKS 94
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
+ FD V QIL +++ V E +F +I YG+A ++ A+ VF +++SF+ RT++S
Sbjct: 95 RNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQS 153
Query: 125 FNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
NTL+N ++ G++++ F + + P++ S+NIL+ G + E A KVFDEML
Sbjct: 154 LNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEML 213
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+ +QP++VT+ +LI LC + +A L EDM++ ++P+A F L+KGLC GE
Sbjct: 214 EMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIK-KRIRPNAVTFGLLMKGLCCKGEY 272
Query: 244 SLA 246
+ A
Sbjct: 273 NEA 275
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
K+FDE+ ++ V P + + ++I F R + A + ++M ++
Sbjct: 206 CKVFDEMLEM--------EVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAV 257
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+F L+ + G+ + L ME + P +Y ILM R+++A + EM
Sbjct: 258 TFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEM 317
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
KRR++P +V + L+ LC E RV EA ++ + M++ KP+A + +I G C + +
Sbjct: 318 KKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTE-MQMKGCKPNAATYRMMIDGFCRIED 376
Query: 243 LSLALGFKEEMVRNK 257
L M+ ++
Sbjct: 377 FDSGLNVLNAMLASR 391
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 3/195 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R N + + L++ L ++E ++++ +++ P + + ++S G+ ++
Sbjct: 250 KRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRG-CKPGLVNYGILMSDLGKRGRID 308
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILM 163
A + EM ++ V +N L+N + T C + L ++ K P+A +Y +++
Sbjct: 309 EAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMI 368
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G + V + ML R PT TF ++ GL +D A + E +M N+
Sbjct: 369 DGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLE-VMGKKNL 427
Query: 224 KPDAQVFASLIKGLC 238
+ + +L+ LC
Sbjct: 428 SFGSGAWQNLLSDLC 442
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 135/254 (53%), Gaps = 12/254 (4%)
Query: 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68
P RL S++ Q++ LALQ+F ++ P F +N Y I+ KL RA+ FD
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 100
Query: 69 EVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127
V+ ++ L++ + E +F +++ YG A E ++++F + F V+R+V+S NT
Sbjct: 101 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 160
Query: 128 LLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LLN ++ + D + +F+ ++ ++P+ + N+L+ +E A+KV DE+
Sbjct: 161 LLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSM 220
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
L P LVT+ T++ G ++ A ++ E+M+ PDA + L+ G C +G S
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSE 279
Query: 246 ALGFKEEMVRNKIE 259
A ++M +N+IE
Sbjct: 280 AATVMDDMEKNEIE 293
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
FD V + K + P I CN+ + + +E A +V DE+ S + + ++
Sbjct: 171 FDLVHAMFKNSKESFGITPN-IFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTY 229
Query: 126 NTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
T+L + G ++ + + ++++ PDA +Y +LM G R +A V D+M K
Sbjct: 230 TTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 289
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
++P VT+G +I LC E + EA + ++M+ + PD+ + +I LC ++
Sbjct: 290 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLE-RSFMPDSSLCCKVIDALCEDHKVD 348
Query: 245 LALGFKEEMVRN 256
A G +M++N
Sbjct: 349 EACGLWRKMLKN 360
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 5/206 (2%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
++ E ++P N + Y ++I L + K E + + ++ + +P+ + C VI
Sbjct: 285 DDMEKNEIEP---NEVTYGVMIRALCKEKKSGEARNMFDEMLERS-FMPDSSLCCKVIDA 340
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156
++ A ++ +M N +TL++ + G++ LF EK P
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSIPSL 400
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G L +A +++D+M +R+ +P T+ LI GL V E +++ E+
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEE 460
Query: 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242
M+ + P+ F L +GL +G+
Sbjct: 461 MLEI-GCFPNKTTFLILFEGLQKLGK 485
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 6/215 (2%)
Query: 50 NLLHYDLIITK-LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
NL+ Y I+ + R M + +++L ++ D P+ + ++ Y + A
Sbjct: 225 NLVTYTTILGGYVARGDM-ESAKRVLEEM-LDRGWYPDATTYTVLMDGYCKLGRFSEAAT 282
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
V D+M ++ ++ ++ A+ K ++F +++E+ PD+ ++
Sbjct: 283 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALC 342
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
++++A ++ +MLK P TLI+ LC E RV EA KL ++ + P
Sbjct: 343 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEK--GSIPSL 400
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI G+C GEL+ A ++M K + +A
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNA 435
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 136/291 (46%), Gaps = 49/291 (16%)
Query: 4 AKPTSPF-RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
A P+ P L +L+ ++DPK + FK +A + FR N+ Y+ + +L
Sbjct: 32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
AK F+ V++IL + + E + +I+ YGR + E+A +VFDEM N +RT
Sbjct: 83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180
SFN LLNA + K D + +F+ + +S PD SYN L+ G +A + D
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALID 201
Query: 181 EMLKRRLQPTLVTFGTLIY-----------------------------------GLCLEL 205
E+ + L+P +TF L++ GL +E
Sbjct: 202 EIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMEN 261
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +E + L D ++ +KPD F ++IKG + G+L A+ + +E+ +N
Sbjct: 262 KSEEMVSLF-DKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKN 311
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 108/221 (48%), Gaps = 4/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRAR 101
P + + L ++ ++ +K FD V+ I +L + P+ + +I G+
Sbjct: 133 PERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGS 192
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
E A+ + DE+ + ++ +FN LL+ T GK + ++ +++EK V D SYN
Sbjct: 193 FTE-AVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYN 251
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+ G + + E+ +FD++ L+P + TF +I G E ++DEA+ +++ +
Sbjct: 252 ARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEK- 310
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+P VF SL+ +C G+L A +E+ ++ +D
Sbjct: 311 NGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVD 351
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 3/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
Y L+I K G+AKM+DE+++++ +K + R E F N++ YG A + A+++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M F + KSFN +LN +++ D + +F K V DAC NIL+ G S
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGN 217
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
LE A ++ DE +++ +P ++TF LI G C + + +EA KL E M + ++PD F
Sbjct: 218 LEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK-ERIEPDTITFN 276
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
LI GL G + + E M
Sbjct: 277 ILISGLRKKGRVEEGIDLLERM 298
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV---ISFYGRARLLEHALQVF 110
++ I+ L AK+FDE+ +I + EI C + I + LE ALQ+
Sbjct: 170 FNFILNLLVSAKLFDEIHKIFVSAPK----LGVEIDACCLNILIKGLCESGNLEAALQLL 225
Query: 111 DEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVS 169
DE + V +F+ L+ GK + L + MEK + PD ++NIL+ G
Sbjct: 226 DEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKK 285
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
R+E+ + + M + +P T+ ++YGL + R EA ++ M+ + ++P
Sbjct: 286 GRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQMIS-WGMRPSFLS 344
Query: 230 FASLIKGLC 238
+ ++ GLC
Sbjct: 345 YKKMVLGLC 353
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 8/221 (3%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQ----LKHDTRVVP-EEIIFCNVISFYGRARL 102
R L+ +D T + KM EV ++ H L + VP +E +F +I YG+A +
Sbjct: 142 RSGLIRHDRD-THMKMIKMLGEVSKLNHARCILLDMPEKGVPWDEDMFVVLIESYGKAGI 200
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ ++++F +M V+RT+KS+N+L +L G+ F +++ + V P +YN+
Sbjct: 201 VQESVKIFQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNL 260
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G +S RLE A + F++M R + P TF T+I G C ++DEA KL + M+
Sbjct: 261 MLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVE-MKGN 319
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ P + ++IKG AV + L EEM + IE +A
Sbjct: 320 KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNA 360
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 1/145 (0%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
LE AL+ F++M + + +FNT++N K+D LF M+ + P SY
Sbjct: 271 LETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTT 330
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ G + R++D ++F+EM ++P T+ TL+ GLC ++ EA + ++MM +
Sbjct: 331 MIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKH 390
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
D +F L+ G+++ A
Sbjct: 391 IAPKDNSIFLKLLVSQSKAGDMAAA 415
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
++ +I R K DE +++ ++K + ++ P + + +I Y ++ L++F+EM
Sbjct: 293 FNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEM 351
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ +++TLL + GK+ ++ + +M K+++P S I + V +
Sbjct: 352 RSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNS--IFLKLLVSQSKA 409
Query: 173 ED---AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR---V 220
D A +V M + +G LI C + A+KL KE ++R
Sbjct: 410 GDMAAATEVLKAMATLNVPAEAGHYGVLIENQCKASAYNRAIKLLDTLIEKEIILRHQDT 469
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLA-LGFKEEMVRNKIEMDA 262
++P A + +I+ LC G+ + A + F++ M R + DA
Sbjct: 470 LEMEPSA--YNPIIEYLCNNGQTAKAEVLFRQLMKRGVQDQDA 510
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 15/247 (6%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K+ SP R+ L+ Q DP LA ++F + PN FR++ + ++I KLG
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPN---------FRHSRSSHLILILKLG 95
Query: 63 RAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + F+ + +L KH + P IF +I Y A+L E L F +M FN
Sbjct: 96 RGRYFNLIDDVL--AKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQ 153
Query: 122 VKSFNTLLNAMLTC-GKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVF 179
K N +L+ +++ G + + +LF+ + V P+ SYN+LM ++ L A+++F
Sbjct: 154 PKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLF 213
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+ML+R + P + ++ LI G C + +V+ A++L +DM+ V PD + +L+ LC
Sbjct: 214 GKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFV-PDRLSYTTLLNSLCR 272
Query: 240 VGELSLA 246
+L A
Sbjct: 273 KTQLREA 279
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP+ + +I + R + A+++ D+M + S+ TLLN++ ++
Sbjct: 221 VVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAY 280
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ K +PD YN ++ G R DA KV D+ML P V++ TLI GL
Sbjct: 281 KLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
C + DE K E+M+ P V L+KG C+ G++ A E +++N
Sbjct: 341 CDQGMFDEGKKYLEEMIS-KGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKN 394
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 7/210 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
Y+++I + +E ++ ++ V P F +I Y + L + A V DE
Sbjct: 276 YNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDE 333
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + + T ++N + A+ G+ID D +++ +PD SYN LMHG + +
Sbjct: 334 MLNAGIYPTTSTYNIYICALCDFGRID---DARELLSSMAAPDVVSYNTLMHGYIKMGKF 390
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A +FD++ + P++VT+ TLI GLC ++ A +LKE+M + PD + +
Sbjct: 391 VEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQL-IFPDVITYTT 449
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
L+KG G LS+A +EM+R I+ D
Sbjct: 450 LVKGFVKNGNLSMATEVYDEMLRKGIKPDG 479
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 105/206 (50%), Gaps = 12/206 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++ I L D+ +++L + P+ + + ++ Y + A +FD++
Sbjct: 346 YNIYICALCDFGRIDDARELLSSM-----AAPDVVSYNTLMHGYIKMGKFVEASLLFDDL 400
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ ++ ++ ++NTL++ + G ++ L + M + + PD +Y L+ G V + L
Sbjct: 401 RAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNL 460
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV---DEALKLKEDMMRVYNVKPDAQV 229
A +V+DEML++ ++P + T G ELR+ D+A +L E+M+ + PD +
Sbjct: 461 SMATEVYDEMLRKGIKPDGYAYTTRAVG---ELRLGDSDKAFRLHEEMVATDHHAPDLTI 517
Query: 230 FASLIKGLCAVGELSLALGFKEEMVR 255
+ I GLC VG L A+ F+ ++ R
Sbjct: 518 YNVRIDGLCKVGNLVKAIEFQRKIFR 543
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
++P I F ++ +A LE +++ EM N++ + ++N L+N GK++
Sbjct: 234 IMPTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEAR 293
Query: 143 DLFQIMEKY---VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
M + V+P S+N L+ G +DAW V DEML + PT T+ I
Sbjct: 294 RFHGDMRRSGFAVTP--YSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYIC 351
Query: 200 GLCLELRVDEALKLKEDM------------------------------MRVYNVKPDAQV 229
LC R+D+A +L M +R ++ P
Sbjct: 352 ALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVT 411
Query: 230 FASLIKGLCAVGELSLALGFKEEMV 254
+ +LI GLC G L A KEEM
Sbjct: 412 YNTLIDGLCESGNLEGAQRLKEEMT 436
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 10/144 (6%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
++ T++ L G+ +L+ +++ K + P +Y +L++G + RLE A++ EM
Sbjct: 552 TYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM 611
Query: 183 LKRRLQPTLVTFGTLIYGLCLELRVDEAL----KLKEDMMRVYNVKPDAQVFASLIKGLC 238
KR ++P ++T L+YG+C +DEA K++E+ + P+ + LI C
Sbjct: 612 KKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEE-----GIPPNKYSYTMLISKNC 666
Query: 239 AVGELSLALGFKEEMVRNKIEMDA 262
+ + +EM+ +IE D
Sbjct: 667 DFEKWEEVVKLYKEMLDKEIEPDG 690
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +Y ++ G + + + + A ++DEML++RL P+++T+ LIYG R+++A +
Sbjct: 548 PDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQY 607
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+M + V+P+ +L+ G+C G + A
Sbjct: 608 STEMKK-RGVRPNVMTHNALLYGMCKAGNIDEA 639
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
Y + + E L F++M +V++ N +L + +++ + +++ M E + P
Sbjct: 178 YTKKSMAEKFLLSFEKMIRKGFLPSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPT 237
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
++N ++ C + LE K++ EM +R ++ + VT+ LI G +++EA +
Sbjct: 238 VITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHG 297
Query: 216 DMMRV-YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
DM R + V P + F LI+G C G A G +EM+ I
Sbjct: 298 DMRRSGFAVTPYS--FNPLIEGYCKQGLFDDAWGVTDEMLNAGI 339
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 3/210 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I + +A + + L Q++ + P E + ++ + + + A +V
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
EM+ +V ++N L+N GK+ D + L + EK +SPD SY+ ++ G
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
S +++A +V EM+++ ++P +T+ +LI G C + R EA L E+M+RV + PD
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV-GLPPDEF 521
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +LI C G+L AL EMV +
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 6/208 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLEHALQVFDE 112
+DL++ R + D+ I+H L +P + + V+ R+ R + A VF E
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M V V ++N L+ G ID LF ME K P+ +YN L+ G R+
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDMMRVYNVKPDAQVF 230
++D +K+ M + L+P L+++ +I GLC E R+ E + L E R Y++ D +
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL--DEVTY 313
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKI 258
+LIKG C G AL EM+R+ +
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGL 341
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +L Y+ ++ R+K + + + +++V P + +I + A ++ A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHG 165
L +FD+M + V ++NTL++ KID L + M K + P+ SYN++++G
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
R+++ V EM +R VT+ TLI G C E +AL + +M+R + + P
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLTP 343
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEM 253
+ SLI +C G ++ A+ F ++M
Sbjct: 344 SVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 87/175 (49%), Gaps = 3/175 (1%)
Query: 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLF-Q 146
+F V+ Y R L++ AL + + V S+N +L+A + + I ++F +
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206
++E VSP+ +YNIL+ G + ++ A +FD+M + P +VT+ TLI G C +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+ KL M + ++P+ + +I GLC G + EM R +D
Sbjct: 256 IDDGFKLLRSMA-LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y+ +I ++ +L +K + + P+ + + V+S + R+ ++ A
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHG 165
L+V EM ++ ++++L+ + DL++ M + + PD +Y L++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ LE A ++ +EM+++ + P +VT+ LI GL + R EA +L + +V
Sbjct: 530 YCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
Query: 226 DA--------------QVFASLIKGLCAVGELSLALGFKEEMV 254
D + SLIKG C G ++ A E M+
Sbjct: 590 DVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESML 632
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I + + D+ ++L + + P I + VI+ R ++ V
Sbjct: 239 NVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG-LEPNLISYNVVINGLCREGRMKEVSFV 297
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCV- 167
EM+ ++NTL+ G + + M ++ ++P +Y L+H
Sbjct: 298 LTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 168 ---VSRRLE-------------------------------DAWKVFDEMLKRRLQPTLVT 193
++R +E +A++V EM P++VT
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVT 417
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ LI G C+ ++++A+ + ED M+ + PD +++++ G C ++ AL K EM
Sbjct: 418 YNALINGHCVTGKMEDAIAVLED-MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 254 VRNKIEMDA 262
V I+ D
Sbjct: 477 VEKGIKPDT 485
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 51/176 (28%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM------------ 132
P+E + +I+ Y LE ALQ+ +EM V V +++ L+N +
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Query: 133 --------------------LTCGKID---------------RMTDLFQIMEKYVS---- 153
C I+ MT+ Q+ E +
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK 637
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209
PD +YNI++HG + + A+ ++ EM+K VT L+ L E +V+E
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 135/286 (47%), Gaps = 46/286 (16%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
L SL+ +++PK ++ FK +A + FR N+ YD + +L AK V+
Sbjct: 44 LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
+IL + K R + +E +IS YG+A + E+A +VF+EM + + +R+V SFN LL+A
Sbjct: 95 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153
Query: 132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
K D + +LF + +S PD SYN L+ L +A + DE+ + L+P
Sbjct: 154 YRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKP 213
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDM--------MRVYN------------------- 222
+VTF TL+ L+ + + ++ M +R YN
Sbjct: 214 DIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLF 273
Query: 223 -------VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+KPD F ++I+G G++ A + +E+V++ D
Sbjct: 274 GELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPD 319
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 111/214 (51%), Gaps = 3/214 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E P + + ++L ++ +++ +K FD V+++ ++L + P+ + + +I
Sbjct: 133 EEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCE 192
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACS 158
L A+ + DE+ + ++ + +FNTLL + G+ + +++ +++EK V+ D +
Sbjct: 193 KDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRT 252
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN + G + ++ +F E+ L+P + +F +I G E ++DEA ++++
Sbjct: 253 YNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIV 312
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALG-FKE 251
+ + +PD FA L+ +C G+ A+ FKE
Sbjct: 313 K-HGYRPDKATFALLLPAMCKAGDFESAIELFKE 345
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 95.1 bits (235), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 11/258 (4%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR 63
+K +P ++ L+R +KD + ++ +F + N F Y +L +L
Sbjct: 11 SKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVL-------RLVS 63
Query: 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123
A F + ++ ++K + VV E+I+ ++ YGR +L+VF +M F+ + K
Sbjct: 64 ANKFKAAEDLIVRMKIENCVVSEDILL-SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQK 122
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG-CVVSRRLEDAWKVFDE 181
++ T+L ++ +++ ++ M E + P S N+L+ C ++ K+F E
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 182
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M KR P T+GTLI GLC R+DEA KL +M+ + P + SLI GLC
Sbjct: 183 MPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVE-KDCAPTVVTYTSLINGLCGSK 241
Query: 242 ELSLALGFKEEMVRNKIE 259
+ A+ + EEM IE
Sbjct: 242 NVDEAMRYLEEMKSKGIE 259
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%), Gaps = 2/175 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTD 143
P+ + +IS R ++ A ++F EM + TV ++ +L+N + +D M
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L ++ K + P+ +Y+ LM G R A ++F+ M+ R +P +VT+ TLI GLC
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
E ++ EA++L D M + +KPDA ++ +I G CA+ + A F +EM+ I
Sbjct: 310 EQKIQEAVELL-DRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGI 363
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ L++F EM ++ TL++ + G+ID LF +++EK +P +Y
Sbjct: 173 VDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L++G S+ +++A + +EM + ++P + T+ +L+ GLC + R +A++L E MM
Sbjct: 233 LINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFE-MMMAR 291
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+P+ + +LI GLC ++ A+ + M ++ DA
Sbjct: 292 GCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 106/244 (43%), Gaps = 42/244 (17%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I+ L R DE +++ ++ + P + + ++I+ ++ ++ A++ +EM
Sbjct: 195 YGTLISGLCRFGRIDEAKKLFTEMV-EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRL 172
S ++ V ++++L++ + G+ + +LF++M + P+ +Y L+ G +++
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM--------------- 217
++A ++ D M + L+P +G +I G C + EA ++M
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIH 373
Query: 218 -------------------------MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
MR + + + SL+K LC GE A+ +E
Sbjct: 374 VKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDE 433
Query: 253 MVRN 256
+V +
Sbjct: 434 IVTD 437
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 107/213 (50%), Gaps = 10/213 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y I +L AK F + ++L K + E+ + ++ YG + + EHA ++FDEM
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIKSEDFVI-RIMLLYGYSGMAEHAHKLFDEM 148
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY-VSPDACSYNILMHGCVVSRR 171
N +RTVKSFN LL+A + K+D F ++ EK ++PD +YN ++
Sbjct: 149 PELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGS 208
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLI---YGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
++D +F+E+ K +P L++F TL+ Y L + D D+M+ N+ P+ +
Sbjct: 209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIW----DLMKSKNLSPNIR 264
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ S ++GL + + AL + M I D
Sbjct: 265 SYNSRVRGLTRNKKFTDALNLIDVMKTEGISPD 297
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y+ +I L R D++ I +L+ + P+ I F ++ + R L ++
Sbjct: 192 DLVTYNTMIKALCRKGSMDDILSIFEELEKNG-FEPDLISFNTLLEEFYRRELFVEGDRI 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
+D M S N+ ++S+N+ + + K +L +M+ + +SPD +YN L+ V
Sbjct: 251 WDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRV 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
LE+ K ++EM ++ L P VT+ LI LC + +D A+++ E+ ++
Sbjct: 311 DNNLEEVMKCYNEMKEKGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIK 361
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 12/229 (5%)
Query: 26 LQLFKNPNPNPNNTE----AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
+++ +NP P + + A + F+ +I + FD V+++L +++ +
Sbjct: 48 MEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLEN 107
Query: 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQRTVKSFNTLLNAMLTCGKIDR 140
RV+ E F V YG+A L + A+ +F M F +R+VKSFN++LN ++ G R
Sbjct: 108 RVIIERS-FIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHR 166
Query: 141 MTDLFQI-----MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
+ + M +SP+ S+N+++ R ++ A +VF M +R+ P T+
Sbjct: 167 GLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYC 226
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
TL+ GLC E R+DEA+ L D M+ P ++ LI GLC G+L+
Sbjct: 227 TLMDGLCKEERIDEAVLLL-DEMQSEGCSPSPVIYNVLIDGLCKKGDLT 274
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 5/206 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N L ++L+I L + + D ++ + + + +P+ +C ++ + ++ A+ +
Sbjct: 186 NGLSFNLVIKALCKLRFVDRAIEVFRGMP-ERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
DEM S + +N L++ + G + R+T L M K P+ +YN L+HG +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM-MRVYNVKPDA 227
+L+ A + + M+ + P VT+GTLI GL + R +A++L M R Y++ +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHL--NQ 362
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+++ LI GL G+ A+ +M
Sbjct: 363 HIYSVLISGLFKEGKAEEAMSLWRKM 388
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P + F VI + R ++ A++VF M ++ TL++ + +ID
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 143 DLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
L M+ + SP YN+L+ G L K+ D M + P VT+ TLI+GL
Sbjct: 243 LLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
CL+ ++D+A+ L E M+ + P+ + +LI GL
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCI-PNDVTYGTLINGL 337
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + N Y ++I+ L + +E + ++ + P +++ ++ R
Sbjct: 356 RGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA-EKGCKPNIVVYSVLVDGLCREGKPN 414
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A ++ + M + ++++L+ G + +++ M+K S + Y++L+
Sbjct: 415 EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLI 474
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G R+++A V+ +ML ++P V + ++I GLC +D ALKL +M+
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEP 534
Query: 224 K--PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
K PD + L+ GLC ++S A+ M+ + D
Sbjct: 535 KSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPD 574
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 101/263 (38%), Gaps = 62/263 (23%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K + N++ Y +++ L R +E ++IL+++ + +P + +++ + + L E
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA-SGCLPNAYTYSSLMKGFFKTGLCE 449
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-------------------------- 138
A+QV+ EM R ++ L++ + G++
Sbjct: 450 EAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSII 509
Query: 139 ---------DRMTDLFQIM----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
D L+ M E PD +YNIL+ G + + + A + + ML R
Sbjct: 510 KGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDR 569
Query: 186 RLQPTLVTFGT---------------------LIYGLCLELRVDEALKLKEDMMRVYNVK 224
P ++T T L+ L RV A + E M+ Y +
Sbjct: 570 GCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKY-LA 628
Query: 225 PDAQVFASLIKGLCAVGELSLAL 247
P +A +++ +C +++ A+
Sbjct: 629 PKTSTWAMIVREICKPKKINAAI 651
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLL 103
K R N++ Y ++ L + + + ++L + ++ P I + ++ +F ++L
Sbjct: 219 KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVL 277
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
E A ++F+EM ++ + ++++L+N + +ID +F +M K D SYN L
Sbjct: 278 E-AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++G ++R+ED K+F EM +R L VT+ TLI G VD+A + M +
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM-DFFG 395
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD + L+ GLC GEL AL E+M + ++++D
Sbjct: 396 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLD 434
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 102/195 (52%), Gaps = 3/195 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y +I L DE Q + L + + + + +I+ + +A+ +E +++
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQ-MFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKL 352
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F EMS + ++NTL+ G +D+ + F M+ + +SPD +YNIL+ G
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCD 412
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ LE A +F++M KR + +VT+ T+I G+C +V+EA L + + +KPD
Sbjct: 413 NGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-LSLKGLKPDIV 471
Query: 229 VFASLIKGLCAVGEL 243
+ +++ GLC G L
Sbjct: 472 TYTTMMSGLCTKGLL 486
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + ++++ + R + A+ + D+M + + ++N +++++ +++ D
Sbjct: 153 PDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF 212
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ +E K + P+ +Y L++G S R DA ++ +M+K+++ P ++T+ L+
Sbjct: 213 FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVK 272
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+V EA +L E+M+R+ ++ PD ++SLI GLC
Sbjct: 273 NGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLC 306
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 2/170 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTD 143
P+ + + +I + + + A F E+ ++ V ++ L+N + + D
Sbjct: 188 PDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L +++K ++P+ +Y+ L+ V + ++ +A ++F+EM++ + P +VT+ +LI GLCL
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
R+DEA ++ D+M D + +LI G C + + EM
Sbjct: 308 HDRIDEANQM-FDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM 356
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 119/251 (47%), Gaps = 27/251 (10%)
Query: 20 KDPKL--ALQLFKN---PNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
+D KL A+ LF + P P+ + L L YD++I+ LG+ KM EV I
Sbjct: 62 RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVIS-LGK-KM--EVLGIR 117
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+ L + +V C +S AL + +M + + +L+N
Sbjct: 118 NDL-YTFNIVINCFCCCFQVSL---------ALSILGKMLKLGYEPDRVTIGSLVNGFC- 166
Query: 135 CGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
+ +R++D +++K V PD +YN ++ ++R+ DA+ F E+ ++ ++P
Sbjct: 167 --RRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+VT+ L+ GLC R +A +L DM++ + P+ +++L+ G++ A
Sbjct: 225 VVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLDAFVKNGKVLEAKELF 283
Query: 251 EEMVRNKIEMD 261
EEMVR I+ D
Sbjct: 284 EEMVRMSIDPD 294
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK ++ ++ ++ +V + + +I + +A ++ A +
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQ-RGLVSNTVTYNTLIQGFFQAGDVDKAQEF 387
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M F + + ++N LL + G++++ +F+ M+K + D +Y ++ G
Sbjct: 388 FSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCK 447
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLK---EDMMRVYNV 223
+ ++E+AW +F + + L+P +VT+ T++ GLC + L EAL K E +M+
Sbjct: 448 TGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCT 507
Query: 224 KPDAQVF--ASLIKGLCAVG 241
D + A LIK + + G
Sbjct: 508 LSDGDITLSAELIKKMLSCG 527
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 28/235 (11%)
Query: 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK 60
M+KAK S LR +DP AL ++K+ + N PL RY + +L + +
Sbjct: 33 MSKAK--------SKLRKVQDPDKALAIYKSVS----NNSTSPLSS-RYAM---ELTVQR 76
Query: 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120
L +++ F +++ ++ K++ ++ E +I YGRA + +HA+++F+EM R
Sbjct: 77 LAKSQRFSDIEALIESHKNNPKI-KTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPR 135
Query: 121 TVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWK 177
TV SFN LL A L +R+ LF + ++Y ++PD SY +L+ S + E A +
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAME 195
Query: 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
+ +M + ++ T++ F T++ L VDEA L +M+ VYNV+
Sbjct: 196 IMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVR 250
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 99/235 (42%), Gaps = 41/235 (17%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
++ ++ ++ + +F+ V Q+ + + + P++I + +I Y + E A++
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAME 195
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF----------------------- 145
+ +M V+ T+ +F T+L ++ G +D L+
Sbjct: 196 IMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAA 255
Query: 146 --------QIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
++ME+ S PD SYN LM V + +A KV++ + QP T
Sbjct: 256 KESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEGLE----QPNAAT 311
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248
F TLI+ LC+ D+ L + + V+ + PD + L +GL + A G
Sbjct: 312 FRTLIFHLCINGLYDQGLTVFKKSAIVHKI-PDFKTCKHLTEGLVKNNRMEDARG 365
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 3/210 (1%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+++ Y ++ LGRAK F E+ ++L ++ D P + + +I YGRA L+ A
Sbjct: 355 FKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDG-CKPNTVTYNRLIHSYGRANYLKEA 413
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHG 165
+ VF++M + ++ TL++ G +D D++Q M E +SPD +Y+++++
Sbjct: 414 MNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINC 473
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ L A ++F EM+ + P LVTF +I + ALKL DM +P
Sbjct: 474 LGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA-GFQP 532
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVR 255
D ++ +++ L G L A G EM R
Sbjct: 533 DKVTYSIVMEVLGHCGFLEEAEGVFAEMQR 562
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +II LG+A ++ ++ P + F +I+ + +AR E AL+++ +M
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQG-CTPNLVTFNIMIALHAKARNYETALKLYRDM 525
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ Q +++ ++ + CG ++ +F M+ K PD Y +L+ + +
Sbjct: 526 QNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNV 585
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+ AW+ + ML+ L+P + T +L+ R+ EA L + M+ + + P Q + +
Sbjct: 586 DKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLAL-GLHPSLQTY-T 643
Query: 233 LIKGLCAVGELSLALGF 249
L+ C + +GF
Sbjct: 644 LLLSCCTDARSNFDMGF 660
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F+ + + Y +++ LG +E + + +++ VP+E ++ ++ +G+A ++ A
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKN-WVPDEPVYGLLVDLWGKAGNVDKA 588
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNIL 162
Q + M ++ V + N+LL+ L ++ RM++ + +++ ++ P +Y +L
Sbjct: 589 WQWYQAMLQAGLRPNVPTCNSLLSTFL---RVHRMSEAYNLLQSMLALGLHPSLQTYTLL 645
Query: 163 MHGCVVSR 170
+ C +R
Sbjct: 646 LSCCTDAR 653
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 3/213 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K F + + Y+++I L D ++L+QL D P I + +I ++
Sbjct: 187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN-CQPTVITYTILIEATMLEGGVD 245
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILM 163
AL++ DEM S ++ + ++NT++ M G +DR ++ + +E K PD SYNIL+
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
+ + E+ K+ +M + P +VT+ LI LC + +++EA+ L + +M+ +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK-LMKEKGL 364
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
PDA + LI C G L +A+ F E M+ +
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISD 397
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 125/278 (44%), Gaps = 31/278 (11%)
Query: 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR--------------- 48
+K P+ +S L + +L F N NPN +N + R
Sbjct: 17 SKTQKPYSNSSHGLLLSHNRSSLLTFSNSNPNNDNGRSFSSSGARNLQTTTTTDATLPTE 76
Query: 49 ------YNLLHYDLIITKL-GRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGR 99
+L D + K+ R+ + LH L+ R P+ I+ +I +
Sbjct: 77 RRQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFT 136
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
R + A++V + + F Q V ++N L+N +ID T + M K SPD +
Sbjct: 137 LRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVT 195
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YNI++ +L+ A KV +++L QPT++T+ LI LE VDEALKL ++M+
Sbjct: 196 YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEML 255
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+KPD + ++I+G+C G + A EMVRN
Sbjct: 256 S-RGLKPDMFTYNTIIRGMCKEGMVDRAF----EMVRN 288
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 103/215 (47%), Gaps = 6/215 (2%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P Y+ YD +I R D + L + D +P+ + + V++ +
Sbjct: 362 KGLTPDAYS---YDPLIAAFCREGRLDVAIEFLETMISDG-CLPDIVNYNTVLATLCKNG 417
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYN 160
+ AL++F ++ S+NT+ +A+ + G KI + + ++M + PD +YN
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
++ +++A+++ +M P++VT+ ++ G C R+++A+ + E M+
Sbjct: 478 SMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG- 536
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
+P+ + LI+G+ G + A+ ++VR
Sbjct: 537 NGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVR 571
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTD 143
P+ + +I+ + + ++ A +V D M S + ++N ++ ++ + GK+D +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215
Query: 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
L Q++ P +Y IL+ ++ +++A K+ DEML R L+P + T+ T+I G+C
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242
E VD A ++ + + + +PD + L++ L G+
Sbjct: 276 EGMVDRAFEMVRN-LELKGCEPDVISYNILLRALLNQGK 313
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
++ LKP ++ Y+ II + + M D +++ L + + ++I N++ RA
Sbjct: 256 SRGLKP---DMFTYNTIIRGMCKEGMVDRAFEMVRNL--ELKGCEPDVISYNILL---RA 307
Query: 101 RL----LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPD 155
L E ++ +M S V +++ L+ + GKI+ +L ++M EK ++PD
Sbjct: 308 LLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPD 367
Query: 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE 215
A SY+ L+ RL+ A + + M+ P +V + T++ LC + D+AL++
Sbjct: 368 AYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 216 DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ V P++ + ++ L + G+ AL EM+ N I+ D
Sbjct: 428 KLGEV-GCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPD 472
>sp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800,
mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2
SV=2
Length = 442
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 134/267 (50%), Gaps = 24/267 (8%)
Query: 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67
+P LA + L++DP L LF N QP F + Y + I KLG AKM+
Sbjct: 138 TPEELADAITLEEDPFLCFHLF-------NWASQQP--RFTHENCSYHIAIRKLGAAKMY 188
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM-SSFNVQ--RTVKS 124
E+ I++Q+ R + E ++ ++I ++ +A L A+ +F M +S N++ T+++
Sbjct: 189 QEMDDIVNQVL-SVRHIGNENLYNSIIFYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRT 247
Query: 125 FNTLLNAMLTCGK--------IDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
++ L A+L G ++ + LF Q+++ + PD + N L+ G V+S + DA
Sbjct: 248 YHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDA 307
Query: 176 WKVFDEM-LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
++F +M + +P T+ LI+GLC + R A +L +M + P+ + + SL+
Sbjct: 308 LRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEM-KGKGFVPNGKSYNSLV 366
Query: 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261
GE+ A+ EM+ N +D
Sbjct: 367 NAFALSGEIDDAVKCLWEMIENGRVVD 393
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFN 126
+ V+ + Q+ D+ + P+ ++ Y + + AL++F +MS ++ + +++
Sbjct: 270 ETVRSLFRQMV-DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYD 328
Query: 127 TLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
L++ + G+ +L M+ K P+ SYN L++ +S ++DA K EM++
Sbjct: 329 YLIHGLCAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIEN 388
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
+++ TL+ C + + DEA +L E M+R
Sbjct: 389 GRVVDFISYRTLVDESCRKGKYDEATRLLE-MLR 421
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 20/222 (9%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S LR + DP AL+++ N ++ A P+ RY +L + +L + + F +++ +
Sbjct: 38 STLRKEHDPDKALKIY----ANVSDHSASPVSS-RY---AQELTVRRLAKCRRFSDIETL 89
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ K+D ++ EE + +I YG+A + HA++ F++M + R+ SFN LLNA L
Sbjct: 90 IESHKNDPKI-KEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148
Query: 134 TCGKIDRMTDLF-QIMEKY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
D++ LF +I ++Y + PD SY IL+ S E A ++ +M + ++ T
Sbjct: 149 HSKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVT 208
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMR--------VYNVK 224
+ F T++ L + ++ A L +M++ YNV+
Sbjct: 209 TIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVR 250
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 37/210 (17%)
Query: 64 AKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
+K FD+V Q+ ++ + +++P++I + +I Y + E A+++ +M ++ T
Sbjct: 150 SKNFDKVPQLFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTT 209
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------------------- 151
+F T+L+++ G+++ +L+ M K
Sbjct: 210 IAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQKESPERVKELIEEM 269
Query: 152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SYN LM L++A KV++ + P TF TLI+ LC
Sbjct: 270 SSMGLKPDTISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLY 329
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
++ + + + ++ + PD L+ GL
Sbjct: 330 EQGYAIFKKSVYMHKI-PDFNTLKHLVVGL 358
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG 62
K K S SL++ ++DP+ L +F +A K F +N Y +++ L
Sbjct: 50 KTKFISHESAVSLMKRERDPQGVLDIF---------NKASQQKGFNHNNATYSVLLDNLV 100
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRT 121
R K F V ILHQ+K++T +E +F N++ + R+ L + +++F+ + V+ +
Sbjct: 101 RHKKFLAVDAILHQMKYET-CRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 159
Query: 122 VKSFNTLLNAMLTCGKID--RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
+ + +T LN ++ G+++ R L+ + P+ C +NIL+ + + A+ V
Sbjct: 160 LNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVV 219
Query: 180 DEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+EM + + P +T+ TL+ L R EA++L EDM+ + PD F +I G C
Sbjct: 220 EEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFC 279
Query: 239 AVGELSLALGFKEEMVRN 256
GE+ A + M +N
Sbjct: 280 RAGEVERAKKILDFMKKN 297
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 6/196 (3%)
Query: 71 QQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM--SSFNVQRTVKSFNTL 128
+++L KH+ + P IF ++ + + + A V +EM S + ++ +++TL
Sbjct: 180 RKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSI-TYSTL 238
Query: 129 LNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186
++ + + +LF+ I ++ +SPD ++N++++G + +E A K+ D M K
Sbjct: 239 MDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNG 298
Query: 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
P + + L+ G C ++ EA K D ++ +K D + +L+ C GE A
Sbjct: 299 CNPNVYNYSALMNGFCKVGKIQEA-KQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEA 357
Query: 247 LGFKEEMVRNKIEMDA 262
+ EM ++ D
Sbjct: 358 MKLLGEMKASRCRADT 373
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 2/210 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y ++ L E ++ + + P+ + F +I+ + RA +E A ++
Sbjct: 231 NSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKI 290
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
D M V +++ L+N GKI F ++ + + D Y LM+
Sbjct: 291 LDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCR 350
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++A K+ EM R + +T+ ++ GL E R +EAL++ D V +
Sbjct: 351 NGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQML-DQWGSEGVHLNKG 409
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ LC GEL A+ F M I
Sbjct: 410 SYRIILNALCCNGELEKAVKFLSVMSERGI 439
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI----SFYGRARLLEHALQV 109
Y ++ R DE ++L ++K +R + + + NVI S GR+ E ALQ+
Sbjct: 341 YTTLMNCFCRNGETDEAMKLLGEMK-ASRCRADTLTY-NVILRGLSSEGRS---EEALQM 395
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
D+ S V S+ +LNA+ G++++ +M E+ + P ++N L+
Sbjct: 396 LDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCE 455
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
S E +V L+ L P ++G ++ +C E ++ +L + ++
Sbjct: 456 SGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLV 505
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 3/188 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ EV +I Q++ + + P+ + + +I YGRAR E AL VF+EM V+ T K++N
Sbjct: 295 YKEVSKIYDQMQR-SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYN 353
Query: 127 TLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
LL+A G +++ +F+ M + + PD SY ++ V + +E A K F +
Sbjct: 354 ILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVD 413
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+GTLI G V++ +++ E MR+ +K + + +++
Sbjct: 414 GFEPNIVTYGTLIKGYAKANDVEKMMEVYEK-MRLSGIKANQTILTTIMDASGRCKNFGS 472
Query: 246 ALGFKEEM 253
ALG+ +EM
Sbjct: 473 ALGWYKEM 480
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 5/200 (2%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQV 109
+ Y +I+ F E +++ L + + + P++ ++ +I Y +A E A +V
Sbjct: 210 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 269
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169
F M V ++ ++N+L++ + ++ ++ D Q+ + PD SY +L+ +
Sbjct: 270 FSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYD--QMQRSDIQPDVVSYALLIKAYGRA 327
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
RR E+A VF+EML ++PT + L+ + V++A + + M R + PD
Sbjct: 328 RREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-RIFPDLWS 386
Query: 230 FASLIKGLCAVGELSLALGF 249
+ +++ ++ A F
Sbjct: 387 YTTMLSAYVNASDMEGAEKF 406
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 96/212 (45%), Gaps = 9/212 (4%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
+ ++ + + ++IT G+ F+ +++L L P I + ++ YGR +A
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSK-MGSTPNVISYTALMESYGRGGKCNNA 193
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKY--VSPDACSYNIL 162
+F M S + + ++ +L + K ++F+ + EK + PD Y+++
Sbjct: 194 EAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMM 253
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ + E A KVF M+ + + + VT+ +L + E E K+ + M R +
Sbjct: 254 IYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSL---MSFETSYKEVSKIYDQMQRS-D 309
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
++PD +A LIK AL EEM+
Sbjct: 310 IQPDVVSYALLIKAYGRARREEEALSVFEEML 341
>sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525,
mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2
SV=2
Length = 626
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
QK AL+ F+ + P F ++ Y + KL + FD V Q+L ++
Sbjct: 53 QKSASGALETFRWASTFPG---------FIHSRSTYRALFHKLCVFRRFDTVYQLLDEMP 103
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ P++ IF +I +GRARL++ + V D +S F ++ ++K FN++L+ ++ I
Sbjct: 104 DSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVK-EDI 162
Query: 139 DRMTDLF--QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196
D + F ++M + D +Y ILM G ++ R+ D +K+ M + P V + T
Sbjct: 163 DIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYNT 222
Query: 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
L++ LC +V A L +M +P+ F LI C
Sbjct: 223 LLHALCKNGKVGRARSLMSEMK-----EPNDVTFNILISAYC 259
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 11/219 (5%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLK-----HDTRVVPEEIIFCNVISFYGRARL 102
R+N ++ +I L D+ +IL ++ H R+ P C + FY R
Sbjct: 385 RWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGARIDPYN---CVIYGFYKENRW 441
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162
E AL+ +M + +SF L++ G D T Q++ + P + L
Sbjct: 442 -EDALEFLLKMEKLFPRAVDRSFK-LISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCL 499
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H ++E++ ++ ++M+ R P TF +I G C + +V +K EDM
Sbjct: 500 IHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIKFVEDMAERGC 559
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + + L++ LC G++ A MV I D
Sbjct: 560 V-PDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVPD 597
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
M + V +NTLL+A+ GK+ R L M++ P+ ++NIL+ ++L
Sbjct: 208 MKTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEMKE---PNDVTFNILISAYCNEQKL 264
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA- 231
+ + ++ P +VT ++ LC E RV EAL++ E RV + V A
Sbjct: 265 IQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLE---RVESKGGKVDVVAC 321
Query: 232 -SLIKGLCAVGELSLALGFKEEMVR 255
+L+KG CA+G++ +A F EM R
Sbjct: 322 NTLVKGYCALGKMRVAQRFFIEMER 346
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP+ + V+ + AL+V + + S + V + NTL+ GK+
Sbjct: 280 VPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQR 339
Query: 144 LFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202
F ME K P+ +YN+L+ G L+ A F++M ++ TF TLI GL
Sbjct: 340 FFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLS 399
Query: 203 LELRVDEALKLKEDM 217
+ R D+ LK+ E M
Sbjct: 400 IGGRTDDGLKILEMM 414
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 39/198 (19%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+I+ Y +L+ AL F++M + ++ +FNTL+ + G+ D + ++M+
Sbjct: 359 LIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSD 418
Query: 153 SPDACS---YNILMHGCVVSRRLEDAWK-------------------------------- 177
+ YN +++G R EDA +
Sbjct: 419 TVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDRSFKLISLCEKGGMDDLK 478
Query: 178 -VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-RVYNVKPDAQVFASLIK 235
+D+M+ P+++ LI+ +++E+L+L DM+ R Y P + F ++I
Sbjct: 479 TAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVTRGY--LPRSSTFNAVII 536
Query: 236 GLCAVGELSLALGFKEEM 253
G C ++ + F E+M
Sbjct: 537 GFCKQDKVMNGIKFVEDM 554
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143
VP I+ +I Y + +E +L++ ++M + +FN ++ K+
Sbjct: 490 VPSIIVSHCLIHRYSQHGKIEESLELINDMVTRGYLPRSSTFNAVIIGFCKQDKVMNGIK 549
Query: 144 LFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ M E+ PD SYN L+ V ++ AW +F M+++ + P + +L++ L
Sbjct: 550 FVEDMAERGCVPDTESYNPLLEELCVKGDIQKAWLLFSRMVEKSIVPDPSMWSSLMFCL 608
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 279 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 327
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A +++D+M ++ + ++N+L+N ++D+ +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 448 DGDCDNAQKVFKQMVS-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 504
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 107/190 (56%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 282
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 283 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 342
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K++D+M+KR + P + T+ +L+ G C+ R+D+A ++ E M+ + PD
Sbjct: 343 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS-KDCFPDVV 401
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 402 TYNTLIKGFC 411
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 398 PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 457
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 458 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 517
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 518 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 552
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 102/205 (49%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + K FD V + +++ +V + +I+ + R + AL +
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQR-LEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVV 168
+M + ++ + ++LLN +I D + + Q++E PD ++ L+HG +
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A + D M++R QP LVT+G ++ GLC D AL L + M ++ D
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL-NKMEAAKIEADVV 261
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+F ++I LC + AL +EM
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEM 286
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ D LAL L N EA ++ +++ ++ II L + + D+ + +++
Sbjct: 238 RGDTDLALNLL-------NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ P + + ++IS YGR A Q+ +M + + +FN L++A +
Sbjct: 288 TKG-IRPNVVTYSSLISCLCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 136 GKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK L+ M ++ + PD +YN L++G + RL+ A ++F+ M+ + P +VT+
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
TLI G C RV++ +L +M + D + +LI+GL G+ A ++MV
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMV 462
Query: 255 RNKIEMD 261
+ + D
Sbjct: 463 SDGVPPD 469
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + ++M + + ++N L+N +I
Sbjct: 79 SRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISL 138
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + + L++G +R+ DA + D+M++ +P +TF TLI+
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 198
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +P+ + ++ GLC G+ LAL +M KIE
Sbjct: 199 GLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257
Query: 260 MD 261
D
Sbjct: 258 AD 259
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLI 582
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
S + Y ++ + +L+DA +F M+K R P++V F L+ + + D +
Sbjct: 47 SSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVIS 106
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
L E M R+ + + LI C ++SLAL +M++
Sbjct: 107 LGEKMQRL-EIVHGLYTYNILINCFCRRSQISLALALLGKMMK 148
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 109/190 (57%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L++++ ++ P +I+ +I + + ++ AL +
Sbjct: 220 DLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNTIIDGLCKYKHMDDALNL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + G+ + L M E+ ++PD +++ L+ V
Sbjct: 279 FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P++VT+ +LI G C+ R+DEA ++ E M+ + PD
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF-PDVV 397
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 398 TYNTLIKGFC 407
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + ++L + + ++
Sbjct: 275 ALNLFKE-------METKGIRP---NVVTYSSLISCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ F +I + + L A +++DEM ++ ++ ++++L+N ++D +
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K+ PD +YN L+ G +R+E+ +VF EM +R L VT+ LI GL
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
D A ++ ++M+ V P+ + +L+ GLC G+L A+ E + R+K+E
Sbjct: 444 AGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQL--KHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
+++ Y +I DE +Q+ + KH P+ + + +I + + + +E +
Sbjct: 360 SIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH---CFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGC 166
+VF EMS + ++N L+ + G D ++F +++ V P+ +YN L+ G
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 476
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ +LE A VF+ + + +++PT+ T+ +I G+C +V++ L + + + VKPD
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN-LSLKGVKPD 535
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ ++I G C G A +EM
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N E L+P +L Y+ II L + K D+ + +++ + P + + ++IS
Sbjct: 245 NKMEQGKLEP---GVLIYNTIIDGLCKYKHMDDALNLFKEMETKG-IRPNVVTYSSLISC 300
Query: 97 ---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV 152
YGR A ++ +M + V +F+ L++A + GK+ L+ +++++ +
Sbjct: 301 LCNYGR---WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 357
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
P +Y+ L++G + RL++A ++F+ M+ + P +VT+ TLI G C RV+E ++
Sbjct: 358 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 417
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ +M + + + + LI+GL G+ +A +EMV + +
Sbjct: 418 VFREMSQ-RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 90/178 (50%), Gaps = 2/178 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + ++++ Y ++ + A+ + D+M Q +FNTL++ + K L
Sbjct: 149 PNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMAL 208
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+++ K PD +Y ++++G + A+ + ++M + +L+P ++ + T+I GLC
Sbjct: 209 IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 268
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+D+AL L ++M ++P+ ++SLI LC G S A +M+ KI D
Sbjct: 269 YKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q++ + + + +I+ + R L
Sbjct: 76 RPFP-SIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSILINCFCRRSQLP 133
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
AL V +M + + + ++LLN +I L Q+ P+ ++N L+
Sbjct: 134 LALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG + + +A + D M+ + QP LVT+G ++ GLC D A L M + +
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KL 252
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P ++ ++I GLC + AL +EM
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEM 282
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R P I F ++S + + + + ++M + + +++ L+N ++
Sbjct: 75 SRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPL 134
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P+ + + L++G S+R+ +A + D+M QP VTF TLI+
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 194
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + ++ GLC G+ LA +M + K+E
Sbjct: 195 GLFLHNKASEAMALI-DRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L +A D Q+I ++ D V P + + ++ + LE A+ V
Sbjct: 430 NTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F+ + ++ T+ ++N ++ M GK++ DLF + K V PD +YN ++ G
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
E+A +F EM + P + TLI
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRR 171
SF + T K F + +++ G ++ F + SY+ L + +
Sbjct: 4 SFAIASTAKRF--VHRSLVVRGNAATVSPSFSFFWRRAFSGKTSYDYREKLSRNGLSELK 61
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L+DA +F EM+K R P+++ F L+ + + D + L E M + + + ++
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNL-GIPHNHYTYS 120
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LI C +L LAL +M++
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMK 144
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ K GR M + +++ V P+ F +I+ + + +++ A ++F +M +
Sbjct: 182 ILLKRGRTGM---AHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELY 238
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSPDACSYNILMHGCVVSRRLE 173
+ V ++NT+++ + GK+ ++ M K V P+ SY L+ G + + ++
Sbjct: 239 HCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEID 298
Query: 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL---KEDMMRVYNVKPDAQVF 230
+A VF +ML R L+P VT+ TLI GL R DE + D + PDA F
Sbjct: 299 EAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTF--APDACTF 356
Query: 231 ASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LIK C G L A+ +EM+ K+ D+
Sbjct: 357 NILIKAHCDAGHLDAAMKVFQEMLNMKLHPDS 388
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 118/223 (52%), Gaps = 5/223 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARL 102
K F + + L++ LGRA+ + + L ++ + V ++ F ++I YG A L
Sbjct: 94 KGFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNAGL 153
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--VSPDACSYN 160
+ ++++F M + +V +FN+LL+ +L G+ DLF M + V+PD+ ++N
Sbjct: 154 FQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFN 213
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM-R 219
L++G + +++A+++F +M P +VT+ T+I GLC +V A + M+ +
Sbjct: 214 TLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKK 273
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+V P+ + +L++G C E+ A+ +M+ ++ +A
Sbjct: 274 ATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNA 316
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 10/207 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILH-QLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ II L RA +L LK T V P + + ++ Y + ++ A+
Sbjct: 243 DVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVL 302
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---QIMEKYVSPDACSYNILMHG 165
VF +M S ++ ++NTL+ + + D + D+ +PDAC++NIL+
Sbjct: 303 VFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKA 362
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL------KEDMMR 219
+ L+ A KVF EML +L P ++ LI LC+ D A L KE ++
Sbjct: 363 HCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLG 422
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLA 246
KP A + + + LCA G+ A
Sbjct: 423 KDECKPLAAAYNPMFEYLCANGKTKQA 449
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TRVVPEEIIFCNVISFYGR 99
++ LKP N + Y+ +I L A +DE++ IL T P+ F +I +
Sbjct: 309 SRGLKP---NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCD 365
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYV------ 152
A L+ A++VF EM + + S++ L+ + + DR LF ++ EK V
Sbjct: 366 AGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFEKEVLLGKDE 425
Query: 153 -SPDACSYNILMHGCVVSRRLEDAWKVFDE------------------------------ 181
P A +YN + + + + A KVF +
Sbjct: 426 CKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQDPPSYKTLITGHCREGKFKPAYE 485
Query: 182 ----MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK--PDAQVFASLIK 235
ML+R P L T+ LI GL L++ EAL + + R+ P A F S++
Sbjct: 486 LLVLMLRREFVPDLETYELLIDGL---LKIGEALLAHDTLQRMLRSSYLPVATTFHSVLA 542
Query: 236 GL 237
L
Sbjct: 543 EL 544
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 9/212 (4%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI--SFYGRARLLEHALQVFD 111
+D + K F Q+K D +P + CN S G+ R+ + AL+ +
Sbjct: 171 FDSLFKTFAHLKKFRNATDTFMQMK-DYGFLPT-VESCNAYMSSLLGQGRV-DIALRFYR 227
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVS 169
EM + + N +++ GK+D+ +L Q ME+ + + D SYN L+ G
Sbjct: 228 EMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDV-SYNTLIAGHCEK 286
Query: 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229
L A K+ + M K LQP +VTF TLI+G C +++ EA K+ +M V NV P+
Sbjct: 287 GLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV-NVAPNTVT 345
Query: 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ +LI G G+ +A F E+MV N I+ D
Sbjct: 346 YNTLINGYSQQGDHEMAFRFYEDMVCNGIQRD 377
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 2/179 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + RA L+ A +VF EM + NV ++NTL+N G +
Sbjct: 306 PNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRF 365
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M + D +YN L+ G + A + E+ K L P TF LI G C+
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
D +L + M+R P+ Q F L+ C + A EMVR I +D+
Sbjct: 426 RKNADRGFELYKSMIRS-GCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVRRSIPLDS 483
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Query: 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146
++ + +I+ + LL AL++ + M +Q V +FNTL++ K+ + +F
Sbjct: 273 DVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFG 332
Query: 147 IMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205
M+ V+P+ +YN L++G E A++ +++M+ +Q ++T+ LI+GLC +
Sbjct: 333 EMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQA 392
Query: 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ +A + +++ + N+ P++ F++LI G C + M+R+
Sbjct: 393 KTRKAAQFVKELDK-ENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRS 442
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 95/205 (46%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ ++ +I RA E ++ ++K V P + + +I+ Y + E A +
Sbjct: 307 NVVTFNTLIHGFCRAMKLQEASKVFGEMKA-VNVAPNTVTYNTLINGYSQQGDHEMAFRF 365
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
+++M +QR + ++N L+ + K + + ++K + P++ +++ L+ G V
Sbjct: 366 YEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCV 425
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ + ++++ M++ P TF L+ C D A ++ +M+R ++ D++
Sbjct: 426 RKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLREMVR-RSIPLDSR 484
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ GL G+ L +EM
Sbjct: 485 TVHQVCNGLKHQGKDQLVKKLLQEM 509
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+L+I L A M + Q + Q+K T +P+ + ++ YG++ ++ +++ EM
Sbjct: 788 YNLLIGGLLEADMIEIAQDVFLQVKS-TGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCVVSRR 171
S+ + + N +++ ++ G +D DL+ + ++ SP AC+Y L+ G S R
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L +A ++F+ ML +P + LI G D A L + M++ V+PD + ++
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVK-EGVRPDLKTYS 965
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L+ LC VG + L + +E+ + + D
Sbjct: 966 VLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 24/242 (9%)
Query: 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ 71
+ LLR+ + AL+LF N E+ +KP Y Y + I G++ D V
Sbjct: 405 ICGLLRVHRLDD-ALELF-------GNMESLGVKPTAYT---YIVFIDYYGKSG--DSVS 451
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFY-----GRARLLEHALQVFDEMSSFNVQRTVKSFN 126
+ K T+ + I+ CN S Y GR R A Q+F + + ++N
Sbjct: 452 ALETFEKMKTKGIAPNIVACNA-SLYSLAKAGRDR---EAKQIFYGLKDIGLVPDSVTYN 507
Query: 127 TLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
++ G+ID L ++ME PD N L++ + R+++AWK+F M +
Sbjct: 508 MMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEM 567
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+L+PT+VT+ TL+ GL ++ EA++L E M++ P+ F +L LC E++L
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQ-KGCPPNTITFNTLFDCLCKNDEVTL 626
Query: 246 AL 247
AL
Sbjct: 627 AL 628
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 3/215 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E K N++ + + L +A E +QI + LK D +VP+ + + ++ Y +
Sbjct: 457 EKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLK-DIGLVPDSVTYNMMMKCYSK 515
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACS 158
++ A+++ EM + V N+L+N + ++D +F M E + P +
Sbjct: 516 VGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 575
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN L+ G + ++++A ++F+ M+++ P +TF TL LC V ALK+ MM
Sbjct: 576 YNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM 635
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ V PD + ++I GL G++ A+ F +M
Sbjct: 636 DMGCV-PDVFTYNTIIFGLVKNGQVKEAMCFFHQM 669
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + ++++I+ L +A D+ + + L D P + +I ++ L A Q+
Sbjct: 854 NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQL 913
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVV 168
F+ M + + +N L+N G+ D LF+ M K V PD +Y++L+ +
Sbjct: 914 FEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCM 973
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R+++ F E+ + L P +V + +I GL R++EAL L +M + PD
Sbjct: 974 VGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLY 1033
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ SLI L G + A E+ R +E
Sbjct: 1034 TYNSLILNLGIAGMVEEAGKIYNEIQRAGLE 1064
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E LKP N+ + + I LGRA +E +IL ++ D P+ + + +I
Sbjct: 250 ETLGLKP---NVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCT 305
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACS 158
AR L+ A +VF++M + + ++ TLL+ +D + + MEK PD +
Sbjct: 306 ARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVT 365
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ IL+ + +A+ D M + + P L T+ TLI GL R+D+AL+L +M
Sbjct: 366 FTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ VKP A + I G+ AL E+M
Sbjct: 426 SL-GVKPTAYTYIVFIDYYGKSGDSVSALETFEKM 459
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 91/207 (43%), Gaps = 3/207 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL DLI + L A + D +L + + I +I + + + A +
Sbjct: 713 NLFWEDLIGSILAEAGI-DNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTL 771
Query: 110 FDEMS-SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
F++ + VQ + ++N L+ +L I+ D+F Q+ PD +YN L+
Sbjct: 772 FEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYG 831
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
S ++++ ++++ EM + +T +I GL VD+AL L D+M + P A
Sbjct: 832 KSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTA 891
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ LI GL G L A E M+
Sbjct: 892 CTYGPLIDGLSKSGRLYEAKQLFEGML 918
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
KP R + Y ++ + + D V+Q +++ D V P+ + F ++ +A
Sbjct: 325 KPDR---VTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV-PDVVTFTILVDALCKAGNFG 380
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILM 163
A D M + + ++NTL+ +L ++D +LF ME V P A +Y + +
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
S A + F++M + + P +V +Y L R EA ++ + + +
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI-GL 499
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
PD+ + ++K VGE+ A+ EM+ N E D
Sbjct: 500 VPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 82/173 (47%), Gaps = 3/173 (1%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N Y+++I G+A D + ++ + V P+ + ++ ++ L
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEG-VRPDLKTYSVLVDCLCMVGRVDEGL 981
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME--KYVSPDACSYNILMHG 165
F E+ + V +N ++N + +++ LF M+ + ++PD +YN L+
Sbjct: 982 HYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILN 1041
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
++ +E+A K+++E+ + L+P + TF LI G L + + A + + M+
Sbjct: 1042 LGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMV 1094
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNI 161
LE VFD M ++R ++ T+ ++ G + + + M ++ +A SYN
Sbjct: 134 LEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNG 193
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+H + SR +A +V+ M+ +P+L T+ +L+ GL +D + L ++ M
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE-METL 252
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+KP+ F I+ L G+++ A
Sbjct: 253 GLKPNVYTFTICIRVLGRAGKINEA 277
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 5/214 (2%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP ++ Y+ ++ LG+ E ++ + P I F + + +
Sbjct: 569 LKP---TVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG-CPPNTITFNTLFDCLCKNDEV 624
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163
AL++ +M V ++NT++ ++ G++ F M+K V PD + L+
Sbjct: 625 TLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVTLCTLL 684
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
G V + +EDA+K+ L QP + + LI + E +D A+ E ++
Sbjct: 685 PGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFSERLVANGI 744
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256
+ + +I+ C +S A E+ ++
Sbjct: 745 CRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKD 778
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P +I+ +I + +E A +F EM + +++ L+N + G + ++
Sbjct: 196 PNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEM 255
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
++ M E V P+ +YN +M+ R +DA++VFDEM +R + +VT+ TLI GLC
Sbjct: 256 YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCR 315
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
E++++EA K+ D M+ + P+ + +LI G C VG+L AL
Sbjct: 316 EMKLNEANKVV-DQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 105/246 (42%), Gaps = 38/246 (15%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I L R +E +++ Q+K D + P I + +I + L AL +
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG-INPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------------------ 151
++ S + ++ ++N L++ G + + ME+
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420
Query: 152 ------------------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ PD +Y++L+HG + ++ +A ++F M+++ +P V
Sbjct: 421 SDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVI 480
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ T+I G C E ALKL ++M + P+ + +I+ LC + A E+M
Sbjct: 481 YNTMILGYCKEGSSYRALKLLKEMEE-KELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539
Query: 254 VRNKIE 259
+ + I+
Sbjct: 540 IDSGID 545
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 38/197 (19%)
Query: 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDA 156
GR + A QVFDEM V + ++NTL+ + K++ + Q+ ++P+
Sbjct: 282 GRTK---DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNL 338
Query: 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216
+YN L+ G +L A + ++ R L P+LVT+ L+ G C + A K+ ++
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 217 M----------------------------------MRVYNVKPDAQVFASLIKGLCAVGE 242
M M + PD ++ LI G C G+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 243 LSLALGFKEEMVRNKIE 259
++ A + MV E
Sbjct: 459 MNEASRLFKSMVEKNCE 475
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152
+I+ Y +++ L ++ F+EM FN LL ++ ++ F + V
Sbjct: 100 IINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKV 159
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
D S+ IL+ GC + +E ++ + E+ + P +V + TLI G C + +++A
Sbjct: 160 VLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGL 237
L +M ++ + + + + LI GL
Sbjct: 220 LFFEMGKL-GLVANERTYTVLINGL 243
>sp|Q9SJN2|PP187_ARATH Pentatricopeptide repeat-containing protein At2g36240
OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
Length = 497
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-------QLKHDTRVVPE-EIIFCN 92
A L FR++ + + L FD++ ++L PE E IF +
Sbjct: 103 AATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSSGIFSCPELEPIFRS 162
Query: 93 VISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK- 150
I Y RAR +++AL FD M + + V +NT++N + G +D+ +Q M K
Sbjct: 163 AIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKE 222
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
PD C++NIL++G S + + A +F EM ++ +P +V+F TLI G +++E
Sbjct: 223 RAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEG 282
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+K+ +M+ + + L+ GLC G + A G +++ ++
Sbjct: 283 VKMAYEMIEL-GCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRV 329
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 2/194 (1%)
Query: 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV 122
RA+ D +K P ++ V++ Y ++ ++ AL+ + M + V
Sbjct: 169 RARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDV 228
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+FN L+N K D DLF+ M EK P+ S+N L+ G + S ++E+ K+ E
Sbjct: 229 CTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYE 288
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++ + + T L+ GLC E RVD+A L D++ V P + SL++ LC
Sbjct: 289 MIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLN-KRVLPSEFDYGSLVEKLCGEN 347
Query: 242 ELSLALGFKEEMVR 255
+ A+ EE+ +
Sbjct: 348 KAVRAMEMMEELWK 361
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ Y+ ++ ++ D+ + ++ + R P+ F +I+ Y R+ + AL +
Sbjct: 192 NVGVYNTVVNGYVKSGDMDKALRFYQRMGKE-RAKPDVCTFNILINGYCRSSKFDLALDL 250
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACSYNILMHGCVV 168
F EM + V SFNTL+ L+ GKI+ + ++++E + IL+ G
Sbjct: 251 FREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA + ++L +R+ P+ +G+L+ LC E + A+++ E++ + P
Sbjct: 311 EGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQT-PCFI 369
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+L++GL G A GF E+M+ I D+
Sbjct: 370 ACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDS 403
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI----MEKYVSPDACSY 159
E A ++M + + +FN LL + + D TD ++ K PD +Y
Sbjct: 385 EKASGFMEKMMNAGILPDSVTFNLLLRDLCSS---DHSTDANRLRLLASSKGYEPDETTY 441
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
++L+ G R ++ + +EML + + P + T+ L+ GL
Sbjct: 442 HVLVSGFTKEGRRKEGEVLVNEMLDKDMLPDIFTYNRLMDGL 483
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 7/209 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I + FD+ + + D P+ + F +I Y RA+ ++ +Q+ E+
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMF-----DLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREI 458
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
S + ++NTL++ ++ DLFQ M + V PD + NIL++G + +L
Sbjct: 459 SRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKL 518
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
E+A ++F+ + ++ V + +I+G+C +VDEA L + ++ V+PD Q +
Sbjct: 519 EEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCS-LPIHGVEPDVQTYNV 577
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+I G C +S A +M N E D
Sbjct: 578 MISGFCGKSAISDANVLFHKMKDNGHEPD 606
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 91 CN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
CN VI + R + A+ ++ +M + + SFN L+ C K+ F +
Sbjct: 109 CNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT 168
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAW---------------KVFDEMLKRRLQPTLVT 193
K PD ++N L+HG + R+ +A +FD+M++ L P ++T
Sbjct: 169 KLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVIT 228
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
F TLI GLCLE RV EA L M+ + D + +++ G+C +G+ AL +M
Sbjct: 229 FNTLINGLCLEGRVLEAAALVNKMVG-KGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKM 287
Query: 254 VRNKIEMD 261
I+ D
Sbjct: 288 EETHIKPD 295
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 9/213 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQI-LHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
K +++ Y I+ G KM D + L +T + P+ +I+ +I +
Sbjct: 255 KGLHIDVVTYGTIVN--GMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHH 312
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A +F EM + V ++N +++ + G+ L + M E+ ++PD ++N L
Sbjct: 313 SDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNAL 372
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ V +L +A K+ DEML R + P VT+ ++IYG C R D+A K D+M
Sbjct: 373 ISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA-KHMFDLM---- 427
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
PD F ++I C + + E+ R
Sbjct: 428 ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISR 460
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 78 KHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136
K + R +P I N+ I + L +L F +++ Q V +FNTLL+ +
Sbjct: 131 KMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLED 190
Query: 137 KIDRMTDLF----------------QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180
+I LF Q++E ++P ++N L++G + R+ +A + +
Sbjct: 191 RISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVN 250
Query: 181 EMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240
+M+ + L +VT+GT++ G+C AL L M + +KPD +++++I LC
Sbjct: 251 KMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH-IKPDVVIYSAIIDRLCKD 309
Query: 241 GELSLALGFKEEMVRNKI 258
G S A EM+ I
Sbjct: 310 GHHSDAQYLFSEMLEKGI 327
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115
LI + K+F E +++ ++ H + P+ + + ++I + + + A +FD M+S
Sbjct: 372 LISASVKEGKLF-EAEKLCDEMLHRC-IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 429
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174
+V +FNT+++ ++D M L +I + + + +YN L+HG L
Sbjct: 430 PDVV----TFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNA 485
Query: 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234
A +F EM+ + P +T L+YG C +++EAL+L E ++++ + D + +I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIII 544
Query: 235 KGLC 238
G+C
Sbjct: 545 HGMC 548
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
L+ A+ FD M T N ++ + + D L++ ME + + + S+NI
Sbjct: 87 LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE------ 215
L+ +L + F ++ K QP +VTF TL++GLCLE R+ EAL L
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206
Query: 216 --------DMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D M + P F +LI GLC G + A +MV + +D
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG--RARLLEHAL 107
N Y+ +I + Q + ++ + V + I CN++ YG LE AL
Sbjct: 466 NTTTYNTLIHGFCEVDNLNAAQDLFQEMI--SHGVCPDTITCNIL-LYGFCENEKLEEAL 522
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
++F+ + + ++N +++ M K+D DLF + + V PD +YN+++ G
Sbjct: 523 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGF 582
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+ DA +F +M +P T+ TLI G +D++++L +M
Sbjct: 583 CGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEM 633
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 47/294 (15%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
K SP + LL+ +K+P+ A LF + +P + ++ + Y I+ +L
Sbjct: 6 KSLSPKHVLKLLKSEKNPRAAFALFDSATRHPG---------YAHSAVVYHHILRRLSET 56
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVK 123
+M + V +I+ ++ E++ +VI YG+ + + AL VF M F + ++
Sbjct: 57 RMVNHVSRIVELIRSQECKCDEDVAL-SVIKTYGKNSMPDQALDVFKRMREIFGCEPAIR 115
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIME---------------------------------- 149
S+NTLLNA + + ++ LF E
Sbjct: 116 SYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWM 175
Query: 150 --KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207
+ PD SY+ +++ + +L+DA ++FDEM +R + P + + LI G E
Sbjct: 176 WKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDH 235
Query: 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
A++L + ++ +V P+ + +I GL G + L E M +N+ E D
Sbjct: 236 KTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 121/244 (49%), Gaps = 11/244 (4%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+KD K A++L+ E + P N+ ++++I+ L + D+ +I ++K
Sbjct: 232 EKDHKTAMELWDRL------LEDSSVYP---NVKTHNIMISGLSKCGRVDDCLKIWERMK 282
Query: 79 HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138
+ R + + ++I A ++ A VF+E+ V ++NT+L CGKI
Sbjct: 283 QNERE-KDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKI 341
Query: 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
+L++IME S + SYNIL+ G + + ++++A ++ M + T+G I
Sbjct: 342 KESLELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFI 401
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+GLC+ V++AL + ++ + D +AS+I LC L A +EM ++ +
Sbjct: 402 HGLCVNGYVNKALGVMQE-VESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGV 460
Query: 259 EMDA 262
E+++
Sbjct: 461 ELNS 464
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 98/200 (49%), Gaps = 4/200 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL Y+++I + K F++ + L + + P+ + VI+ +A L+ AL++
Sbjct: 148 NLQTYNVLIKMSCKKKEFEKARGFLDWMWKEG-FKPDVFSYSTVINDLAKAGKLDDALEL 206
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ--IMEKYVSPDACSYNILMHGCV 167
FDEMS V V +N L++ L +L+ + + V P+ ++NI++ G
Sbjct: 207 FDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLS 266
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
R++D K+++ M + + L T+ +LI+GLC VD+A + ++ D
Sbjct: 267 KCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDE-RKASIDV 325
Query: 228 QVFASLIKGLCAVGELSLAL 247
+ +++ G C G++ +L
Sbjct: 326 VTYNTMLGGFCRCGKIKESL 345
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 2/159 (1%)
Query: 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149
+ ++I + + LE A + EMS V+ N L+ ++ ++ + + M
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 150 KY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208
K P SYNIL+ G + + +A EML+ +P L T+ L+ GLC + ++D
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID 551
Query: 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
AL+L ++ ++ D + LI GLC+VG+L A+
Sbjct: 552 LALELWHQFLQS-GLETDVMMHNILIHGLCSVGKLDDAM 589
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 7/215 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHAL 107
N++ Y+++I L DE I + + IF + + G + AL
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNG---YVNKAL 414
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGC 166
V E+ S V ++ ++++ + +++ ++L + M K+ V ++ N L+ G
Sbjct: 415 GVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGL 474
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ RL +A EM K +PT+V++ LI GLC + EA ++M+ KPD
Sbjct: 475 IRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE-NGWKPD 533
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ ++ L+ GLC ++ LAL + +++ +E D
Sbjct: 534 LKTYSILLCGLCRDRKIDLALELWHQFLQSGLETD 568
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQL-----KHDTRVVPEEIIFCNVISFYGRARL 102
R ++ Y+++I L +A F E + ++ K D + I+ C + R R
Sbjct: 496 RPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYS--ILLCGLC----RDRK 549
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNI 161
++ AL+++ + ++ V N L++ + + GK+D MT + + + + + +YN
Sbjct: 550 IDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNT 609
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
LM G A ++ M K LQP ++++ T++ GLC+ V A++ +D R +
Sbjct: 610 LMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD-ARNH 668
Query: 222 NVKPDAQVFASLIKGL 237
+ P + L++ +
Sbjct: 669 GIFPTVYTWNILVRAV 684
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFD 111
Y II L + K +E ++ ++ KH + CN +I R L A
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSH---VCNALIGGLIRDSRLGEASFFLR 488
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSR 170
EM + TV S+N L+ + GK + +++E PD +Y+IL+ G R
Sbjct: 489 EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
+++ A +++ + L+ L+ ++ LI+GLC ++D+A+ + +M N + +
Sbjct: 549 KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEH-RNCTANLVTY 607
Query: 231 ASLIKGLCAVGELSLA 246
+L++G VG+ + A
Sbjct: 608 NTLMEGFFKVGDSNRA 623
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 13/194 (6%)
Query: 59 TKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
++LG A F + K+ R VV I+ C + +A A EM
Sbjct: 478 SRLGEASFF-----LREMGKNGCRPTVVSYNILICGLC----KAGKFGEASAFVKEMLEN 528
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDA 175
+ +K+++ LL + KID +L+ Q ++ + D +NIL+HG +L+DA
Sbjct: 529 GWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDA 588
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
V M R LVT+ TL+ G + A + M ++ ++PD + +++K
Sbjct: 589 MTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKM-GLQPDIISYNTIMK 647
Query: 236 GLCAVGELSLALGF 249
GLC +S A+ F
Sbjct: 648 GLCMCRGVSYAMEF 661
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 120/238 (50%), Gaps = 13/238 (5%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL LFK E + ++P N++ Y +I+ L + + Q+L + + ++
Sbjct: 204 ALNLFKE-------METKGIRP---NVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKIN 252
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + A ++ D+M ++ + ++N+L+N ++D+ +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F+ M K PD +YN L+ G S+R+ED ++F EM R L VT+ TLI GL
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ D A K+ + M+ V PD ++ L+ GLC G+L AL + M +++I++D
Sbjct: 373 DGDCDNAQKVFKQMVS-DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLD 429
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 106/190 (55%), Gaps = 3/190 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL+ Y +++ L + D +L++++ ++ + +IF +I + R ++ AL +
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIFNTIIDSLCKYRHVDDALNL 207
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++++L++ + + G+ + L M EK ++P+ ++N L+ V
Sbjct: 208 FKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVK 267
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ +A K+ D+M+KR + P + T+ +LI G C+ R+D+A ++ E M+ + PD
Sbjct: 268 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS-KDCFPDLD 326
Query: 229 VFASLIKGLC 238
+ +LIKG C
Sbjct: 327 TYNTLIKGFC 336
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + +I + +++ +E ++F EMS + ++ TL+ + G D +
Sbjct: 323 PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKV 382
Query: 145 F-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F Q++ V PD +Y+IL+ G + +LE A +VFD M K ++ + + T+I G+C
Sbjct: 383 FKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCK 442
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
+VD+ L + + VKP+ + ++I GLC+
Sbjct: 443 AGKVDDGWDLFCS-LSLKGVKPNVVTYNTMISGLCS 477
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P F ++S + + + + + ++M + + ++N L+N +I
Sbjct: 4 SRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISL 63
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ P + + L++G +R+ DA + D+M++ +P +TF TLI+
Sbjct: 64 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L + M++ +P+ + ++ GLC G++ LA +M KIE
Sbjct: 124 GLFLHNKASEAVALVDRMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182
Query: 260 MD 261
D
Sbjct: 183 AD 184
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 101/206 (49%), Gaps = 5/206 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQ 108
++ ++ +++ + + K FD V + +++ + + N+ I+ + R + AL
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQR--LGISHNLYTYNILINCFCRRSQISLALA 66
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCV 167
+ +M + ++ + ++LLN +I D + + Q++E PD ++ L+HG
Sbjct: 67 LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ + +A + D M++R QP LVT+G ++ GLC +D A L + M ++ D
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL-NKMEAAKIEADV 185
Query: 228 QVFASLIKGLCAVGELSLALGFKEEM 253
+F ++I LC + AL +EM
Sbjct: 186 VIFNTIIDSLCKYRHVDDALNLFKEM 211
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 37 NNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96
N EA ++ +++ ++ II L + + D+ + +++ + P + + ++IS
Sbjct: 174 NKMEAAKIEA---DVVIFNTIIDSLCKYRHVDDALNLFKEMETKG-IRPNVVTYSSLISC 229
Query: 97 ---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYV 152
YGR A Q+ +M + + +FN L++A + GK L M ++ +
Sbjct: 230 LCSYGR---WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI 286
Query: 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212
PD +YN L++G + RL+ A ++F+ M+ + P L T+ TLI G C RV++ +
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTE 346
Query: 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
L +M + D + +LI+GL G+ A ++MV + + D
Sbjct: 347 LFREMSH-RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I L D Q++ Q+ D V P+ + + ++ LE AL+VFD M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDG-VPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
++ + + T++ M GK+D DLF + K V P+ +YN ++ G R L
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 481
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLI 198
++A+ + +M + P T+ TLI
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTYNTLI 507
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 6/221 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E Q +KP + L Y+ +I + + ++ ++++K V P + +I YGR
Sbjct: 416 EKQGMKP---DHLAYNCLIRRFCELGEMENAEKEVNKMKLKG-VSPSVETYNILIGGYGR 471
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACS 158
+ + EM V S+ TL+N + K+ + + ME + VSP
Sbjct: 472 KYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRI 531
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
YN+L+ GC ++EDA++ EMLK+ ++ LVT+ TLI GL + ++ EA L ++
Sbjct: 532 YNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R +KPD + SLI G G + + EEM R+ I+
Sbjct: 592 R-KGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIK 631
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 3/203 (1%)
Query: 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111
Y L+ L +KM E + L+++ + P ++ + + + VF
Sbjct: 110 FSYLLLSVLLNESKMISEAADLFFALRNEG-IYPSSDSLTLLLDHLVKTKQFRVTINVFL 168
Query: 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSR 170
+ + + + + + A + + + +LF M+ + P YN+L+ G +
Sbjct: 169 NILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGK 228
Query: 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230
R+ DA ++FDEML RRL P+L+T+ TLI G C +++ K++E M+ +++P F
Sbjct: 229 RMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE-RMKADHIEPSLITF 287
Query: 231 ASLIKGLCAVGELSLALGFKEEM 253
+L+KGL G + A +EM
Sbjct: 288 NTLLKGLFKAGMVEDAENVLKEM 310
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 7/213 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y +I L + E Q I+ + D V P+ I+ +I +E A +
Sbjct: 493 NVVSYGTLINCLCKGSKLLEAQ-IVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRF 551
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
EM ++ + ++NTL++ + GK+ DL +I K + PD +YN L+ G
Sbjct: 552 SKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGF 611
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ +++EM + ++PTL T+ LI LC E ++L E + ++KPD
Sbjct: 612 AGNVQRCIALYEEMKRSGIKPTLKTYHLLI-SLC----TKEGIELTERLFGEMSLKPDLL 666
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V+ ++ G++ A +++M+ I +D
Sbjct: 667 VYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLD 699
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 101/192 (52%), Gaps = 5/192 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I L + K ++ +Q+ ++ R++P I + +I Y +A E + +V + M
Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLA-RRLLPSLITYNTLIDGYCKAGNPEKSFKVRERM 275
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ +++ ++ +FNTLL + G ++ ++ + M+ PDA +++IL G + +
Sbjct: 276 KADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKA 335
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK-LKEDMMRVYNVKPDAQVFA 231
E A V++ + ++ T L+ LC E ++++A + L +M + + P+ ++
Sbjct: 336 EAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK--GLVPNEVIYN 393
Query: 232 SLIKGLCAVGEL 243
++I G C G+L
Sbjct: 394 TMIDGYCRKGDL 405
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 105/211 (49%), Gaps = 9/211 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K NL+ Y+ +I L E + +L ++ + P+ + ++IS YG A ++
Sbjct: 558 KGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG-LKPDVFTYNSLISGYGFAGNVQ 616
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164
+ +++EM ++ T+K+++ LL ++ T I+ LF M + PD YN ++H
Sbjct: 617 RCIALYEEMKRSGIKPTLKTYH-LLISLCTKEGIELTERLFGEMS--LKPDLLVYNGVLH 673
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRVYN 222
V +E A+ + +M+++ + T+ +LI G +L+V + +++ D M
Sbjct: 674 CYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG---QLKVGKLCEVRSLIDEMNARE 730
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++P+A + ++KG C V + A + EM
Sbjct: 731 MEPEADTYNIIVKGHCEVKDYMSAYVWYREM 761
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 1/140 (0%)
Query: 72 QILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131
++ +L + + P+ +++ V+ Y +E A + +M ++ ++N+L+
Sbjct: 650 ELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILG 709
Query: 132 MLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
L GK+ + L M + + P+A +YNI++ G + A+ + EM ++
Sbjct: 710 QLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLD 769
Query: 191 LVTFGTLIYGLCLELRVDEA 210
+ L+ GL E R EA
Sbjct: 770 VCIGNELVSGLKEEWRSKEA 789
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
++P ++F ++ + +AR L A +F M F V + +N L++ G +
Sbjct: 298 AELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLE 357
Query: 141 MTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
L ME +SPD +Y IL++G + ++ +A ++F +M R+ P+ T+ +LI+
Sbjct: 358 AVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIH 417
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
G C E +++AL L +M V+P+ F++LI G C V ++ A+G EM I
Sbjct: 418 GYCKEYNMEQALDLCSEMT-ASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIV 476
Query: 260 MD 261
D
Sbjct: 477 PD 478
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116
I+ L R + FD V + +QL +VP+ I+ + + L ++ DEM+S
Sbjct: 170 ILNGLVRRRRFDSVW-VDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSL 228
Query: 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDA 175
++ V + + + K++ +F++M+K+ V P+ +Y+ ++ G + + A
Sbjct: 229 GIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQA 288
Query: 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235
+ ++ E+L L P +V FGTL+ G C + A L M++ + V P+ V+ LI
Sbjct: 289 YGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK-FGVDPNLYVYNCLIH 347
Query: 236 GLCAVGELSLALGFKEEM 253
G C G + A+G EM
Sbjct: 348 GHCKSGNMLEAVGLLSEM 365
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 100/215 (46%), Gaps = 6/215 (2%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E+ L P ++ Y ++I L E ++ ++K++ R+ P + ++I Y +
Sbjct: 366 ESLNLSP---DVFTYTILINGLCIEDQVAEANRLFQKMKNE-RIFPSSATYNSLIHGYCK 421
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL-FQIMEKYVSPDACS 158
+E AL + EM++ V+ + +F+TL++ I L F++ K + PD +
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVT 481
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y L+ +++A +++ +ML+ + P TF L+ G E R+ A+ ++
Sbjct: 482 YTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENN 541
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ + F LI+GLC G + A F +M
Sbjct: 542 QQRSCWNHVG-FTCLIEGLCQNGYILRASRFFSDM 575
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197
+D MT L + P+ Y I + ++E+A K+F+ M K + P L T+ +
Sbjct: 222 LDEMTSLG------IKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275
Query: 198 IYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257
I G C V +A L ++++ V + P+ VF +L+ G C EL A MV+
Sbjct: 276 IDGYCKTGNVRQAYGLYKEIL-VAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFG 334
Query: 258 IE 259
++
Sbjct: 335 VD 336
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 36/141 (25%)
Query: 149 EKYVSPDACSYNILMHGCVVSRRLEDAW-------------------------------- 176
E SPD+ + +++G V RR + W
Sbjct: 157 EMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYS 216
Query: 177 ---KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233
K+ DEM ++P + + I LC + +++EA K+ E +M+ + V P+ ++++
Sbjct: 217 KKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFE-LMKKHGVLPNLYTYSAM 275
Query: 234 IKGLCAVGELSLALGFKEEMV 254
I G C G + A G +E++
Sbjct: 276 IDGYCKTGNVRQAYGLYKEIL 296
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS---FNTLLNAMLTCGKIDRMTDLFQI 147
C V F+ RL A+ + E N QR+ + F L+ + G I R + F
Sbjct: 519 CLVDGFWKEGRL-SVAIDFYQEN---NQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSD 574
Query: 148 MEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
M ++PD CSY ++ G + +R+ D + +M+K + P L+
Sbjct: 575 MRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLV 621
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL +KN N N K R N++ Y+ +I L + + ++L + + ++
Sbjct: 264 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKIN 322
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + L A +++DEM ++ + ++++L+N ++D +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++M K P+ +YN L+ G ++R+E+ ++F EM +R L VT+ TLI GL
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D A K+ + M+ V PD ++ L+ GLC G+L AL E + ++K+E D
Sbjct: 443 AGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPD 499
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L Y ++ L + D +L +++ ++ + +I+ +I + + AL +
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEADVVIYTTIIDALCNYKNVNDALNL 277
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + G+ + L M E+ ++P+ +++ L+ V
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 337
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 338 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 396
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 397 TYNTLIKGFCKAKRVEEGMELFREM 421
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID- 139
+R +P + F ++S + + + + + M + + + S+N L+N ++
Sbjct: 74 SRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPL 133
Query: 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY 199
+ L ++M+ PD + + L++G +R+ +A + D+M QP VTF TLI+
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 193
Query: 200 GLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
GL L + EA+ L D M +PD + +++ GLC G++ LAL ++M + KIE
Sbjct: 194 GLFLHNKASEAVALI-DRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 260 MD 261
D
Sbjct: 253 AD 254
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK +E ++ ++ +V + + +I +A + A ++
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK+++ +F+ ++K + PD +YNI++ G
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P ++ + T+I G C + +EA L + M+ P++
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE-MKEDGTLPNSG 571
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI+ G+ + + +EM
Sbjct: 572 TYNTLIRARLRDGDKAASAELIKEM 596
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ ++ +++ + + FD V + ++++ R+ + + +I+ + R L AL V
Sbjct: 79 SIVEFNKLLSAIAKMNKFDLVISLGERMQN-LRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLFQIMEKYVSPDACSYNILMHGC 166
+M + + + ++LLN +I + D +ME P+ ++N L+HG
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME--YQPNTVTFNTLIHGL 195
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
+ + +A + D M+ R QP L T+GT++ GLC +D AL L + M + ++ D
Sbjct: 196 FLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKG-KIEAD 254
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
++ ++I LC ++ AL EM
Sbjct: 255 VVIYTTIIDALCNYKNVNDALNLFTEM 281
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 136 GKIDRMTDLFQIMEKYVSPDACSYNI---LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
++ + + LF + Y S A SY+ L ++ +L+DA +F EM++ R P++V
Sbjct: 24 AQLRKASPLFSLRGVYFS--AASYDYREKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIV 81
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
F L+ + + D + L E M + + D + LI C +L LAL +
Sbjct: 82 EFNKLLSAIAKMNKFDLVISLGERMQNL-RISYDLYSYNILINCFCRRSQLPLALAVLGK 140
Query: 253 MVRNKIEMD 261
M++ E D
Sbjct: 141 MMKLGYEPD 149
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 125/251 (49%), Gaps = 14/251 (5%)
Query: 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQI 73
S+L + + + +Q FK N F+++ Y +I L A+++ E+ +
Sbjct: 98 SILEIDVEINVKIQFFKWAGKRRN---------FQHDCSTYMTLIRCLEEARLYGEMYRT 148
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
+ ++ +T V + ++ GRA+++ AL VF + + T ++N+++ ++
Sbjct: 149 IQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLM 208
Query: 134 TCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191
G+ +++ +++ M E PD +Y+ L+ R + A ++FDEM +QPT
Sbjct: 209 QEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTE 268
Query: 192 VTFGTLIYGLCLEL-RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
+ TL+ G+ ++ +V++AL L E+M R P + LIKGL G + A GF
Sbjct: 269 KIYTTLL-GIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 251 EEMVRNKIEMD 261
++M+R+ + D
Sbjct: 327 KDMLRDGLTPD 337
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 95/185 (51%), Gaps = 2/185 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+ +I L + ++V ++ ++ ++ P+ I + +IS Y + + A+++FDEM
Sbjct: 200 YNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM 259
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+Q T K + TLL GK+++ DLF+ M++ SP +Y L+ G + R+
Sbjct: 260 KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRV 319
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A+ + +ML+ L P +V L+ L RV+E + + M ++ P + +
Sbjct: 320 DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSE-MGMWRCTPTVVSYNT 378
Query: 233 LIKGL 237
+IK L
Sbjct: 379 VIKAL 383
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+A DE + D + P+ + N+++ G+ +E VF EM
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDG-LTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Query: 114 SSFNVQRTVKSFNTLLNAMLTC-GKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRR 171
+ TV S+NT++ A+ + ++ F M+ VSP +Y+IL+ G + R
Sbjct: 365 GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNR 424
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + +EM ++ P + +LI L R + A +L +++ + ++V+A
Sbjct: 425 VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG-NVSSRVYA 483
Query: 232 SLIKGLCAVGELSLALGFKEEM 253
+IK G+LS A+ EM
Sbjct: 484 VMIKHFGKCGKLSEAVDLFNEM 505
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 93/188 (49%), Gaps = 3/188 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I LG+AK ++ ++ +LK + V + + +I +G+ L A+ +F+EM
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEAVDLFNEM 505
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
+ V ++N L++ M+ G I+ L + ME+ D S+NI+++G +
Sbjct: 506 KNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP 565
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
A ++F+ + ++P VT+ TL+ +EA ++ + M+ + DA ++S
Sbjct: 566 RRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE-MKDKGFEYDAITYSS 624
Query: 233 LIKGLCAV 240
++ + V
Sbjct: 625 ILDAVGNV 632
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 95/232 (40%), Gaps = 53/232 (22%)
Query: 50 NLLHYDLIIT---KLGR----AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
+ + Y +I+ KLGR ++FDE++ D + P E I+ ++ Y +
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMK--------DNCMQPTEKIYTTLLGIYFKVGK 283
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNI 161
+E AL +F+EM TV ++ L+ + G++D ++ ++ ++PD N
Sbjct: 284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNN 343
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT------------------------- 196
LM+ R+E+ VF EM R PT+V++ T
Sbjct: 344 LMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKAD 403
Query: 197 -----------LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237
LI G C RV++AL L E+M P + SLI L
Sbjct: 404 SVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDE-KGFPPCPAAYCSLINAL 454
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
EA LKP + + Y +I L +A DE ++ L+ + RV P + +I YG
Sbjct: 265 EANGLKP---DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGS 320
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159
A + A + + + +V ++N +L + GK+D +F+ M+K +P+ +Y
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTY 380
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
NIL+ + +L+ A+++ D M K L P + T ++ LC ++DEA + E+M
Sbjct: 381 NILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM-- 438
Query: 220 VYNV-KPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
Y V PD F SLI GL VG + A E+M+
Sbjct: 439 DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKML 474
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y+++I + ++ Q+L ++K P + + +VI + L+ A +F+E
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 648
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRL 172
S ++ V +++L++ G+ID + + +M+K ++P+ ++N L+ V + +
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEI 708
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
+A F M + + P VT+G LI GLC + ++A ++M + +KP + +
Sbjct: 709 NEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQK-QGMKPSTISYTT 767
Query: 233 LIKGLCAVGELSLA 246
+I GL G ++ A
Sbjct: 768 MISGLAKAGNIAEA 781
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 28 LFKNPNPNPNNTEAQPLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85
+FK P + +K R+ + Y ++I L +A +E ++ + +K V+
Sbjct: 527 MFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLD 586
Query: 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF 145
+ VI + + + A Q+ +EM + + TV ++ ++++ + KIDR+ + +
Sbjct: 587 TRA-YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGL---AKIDRLDEAY 642
Query: 146 QIME----KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+ E K + + Y+ L+ G R+++A+ + +E++++ L P L T+ +L+ L
Sbjct: 643 MLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
++EAL + M + P+ + LI GLC V + + A F +EM
Sbjct: 703 VKAEEINEALVCFQSMKEL-KCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 123/280 (43%), Gaps = 73/280 (26%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ +L +++ DE + ++ + P+EI FC++I G+ ++ A +V
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFCSLIDGLGKVGRVDDAYKV 469
Query: 110 FDEM-------SSFNVQRTVKSF----------------------------NTLLNAMLT 134
+++M +S +K+F NT ++ M
Sbjct: 470 YEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFK 529
Query: 135 CGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG---------------------CVVSRR- 171
G+ ++ +F+ I + PDA SY+IL+HG CV+ R
Sbjct: 530 AGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRA 589
Query: 172 -------------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+ A+++ +EM + +PT+VT+G++I GL R+DEA L E+
Sbjct: 590 YNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE-A 648
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ ++ + +++SLI G VG + A EE+++ +
Sbjct: 649 KSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGL 688
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 4/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+T L + DE ++ ++K D P + +I RA L+ A ++
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKD--AAPNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
D M + V++ N +++ + K+D +F+ M+ K +PD ++ L+ G
Sbjct: 400 RDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
R++DA+KV+++ML + + + +LI R ++ K+ +DM+ N PD Q
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMIN-QNCSPDLQ 518
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ + + + GE EE+ + DA
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 95/205 (46%), Gaps = 16/205 (7%)
Query: 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDE 112
H D+++T +F ++Q++ ++ P +F +I + + ++ AL + DE
Sbjct: 183 HSDMMLT------LFQQMQELGYE--------PTVHLFTTLIRGFAKEGRVDSALSLLDE 228
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
M S ++ + +N +++ GK+D F +E + PD +Y ++ + R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
L++A ++F+ + K R P + T+I G + DEA L E R P +
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE-RQRAKGSIPSVIAYN 347
Query: 232 SLIKGLCAVGELSLALGFKEEMVRN 256
++ L +G++ AL EEM ++
Sbjct: 348 CILTCLRKMGKVDEALKVFEEMKKD 372
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 23/259 (8%)
Query: 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64
KP F + L RL KD A++ F+ TE P P YN L L++ + R
Sbjct: 62 KPQPEFVIGVLRRL-KDVNRAIEYFR---WYERRTEL-PHCPESYNSL---LLV--MARC 111
Query: 65 KMFDEVQQILHQLK-----HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
+ FD + QIL ++ E ++ C +A L V M F +
Sbjct: 112 RNFDALDQILGEMSVAGFGPSVNTCIEMVLGCV------KANKLREGYDVVQMMRKFKFR 165
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKV 178
++ TL+ A D M LFQ M++ P + L+ G R++ A +
Sbjct: 166 PAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSL 225
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM L +V + I +VD A K + + +KPD + S+I LC
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE-IEANGLKPDEVTYTSMIGVLC 284
Query: 239 AVGELSLALGFKEEMVRNK 257
L A+ E + +N+
Sbjct: 285 KANRLDEAVEMFEHLEKNR 303
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 123 KSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+S+N+LL M C D + + M P + ++ GCV + +L + + V
Sbjct: 99 ESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQM 158
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M K + +P + TLI D L L + M + +P +F +LI+G G
Sbjct: 159 MRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQEL-GYEPTVHLFTTLIRGFAKEG 217
Query: 242 ELSLALGFKEEMVRNKIEMD 261
+ AL +EM + ++ D
Sbjct: 218 RVDSALSLLDEMKSSSLDAD 237
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
NL ++ ++ L +A+ +E +K + + P ++ + +I+ + R A
Sbjct: 691 NLYTWNSLLDALVKAEEINEALVCFQSMK-ELKCTPNQVTYGILINGLCKVRKFNKAFVF 749
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168
+ EM ++ + S+ T+++ + G I LF + PD+ YN ++ G
Sbjct: 750 WQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSN 809
Query: 169 SRRLEDAWKVFDEMLKRRL----QPTLVTFGTLIYGLCLE 204
R DA+ +F+E +R L + +V TL CLE
Sbjct: 810 GNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLE 849
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 2/181 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E K N++ Y +I G+ DE IL +L + P + +++ +
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNLYTWNSLLDALVK 704
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACS 158
A + AL F M ++ L+N + K ++ +Q M+K + P S
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
Y ++ G + + +A +FD P + +I GL R +A L E+
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824
Query: 219 R 219
R
Sbjct: 825 R 825
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 121/257 (47%), Gaps = 11/257 (4%)
Query: 3 KAKPTSPFRLASLL-RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL 61
K P +P + S+L RL ALQ F + + + + ++ +DL I
Sbjct: 50 KTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDNHH--------REYVHDASSFDLAIDIA 101
Query: 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT 121
R + V ++H+++ R+ P F V Y A + A+++F M +
Sbjct: 102 ARLHLHPTVWSLIHRMR-SLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQD 160
Query: 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181
+ SFNT+L+ + ++++ +LF+ + S D +YN++++G + +R A +V E
Sbjct: 161 LASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKE 220
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
M++R + P L T+ T++ G ++ A + +M + + + D + +++ G G
Sbjct: 221 MVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKK-RDCEIDVVTYTTVVHGFGVAG 279
Query: 242 ELSLALGFKEEMVRNKI 258
E+ A +EM+R +
Sbjct: 280 EIKRARNVFDEMIREGV 296
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L ++ I+ L ++K ++ ++ L+ R + + + +++ + + AL+V
Sbjct: 160 DLASFNTILDVLCKSKRVEKAYELFRALR--GRFSVDTVTYNVILNGWCLIKRTPKALEV 217
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
EM + + ++NT+L G+I + F M+K D +Y ++HG V
Sbjct: 218 LKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGV 277
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ A VFDEM++ + P++ T+ +I LC + V+ A+ + E+M+R +P+
Sbjct: 278 AGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVR-RGYEPNVT 336
Query: 229 VFASLIKGLCAVGELS 244
+ LI+GL GE S
Sbjct: 337 TYNVLIRGLFHAGEFS 352
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 4/192 (2%)
Query: 72 QILHQL-KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130
Q H L H V + F I R L + M S + + K+F +
Sbjct: 75 QFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAE 134
Query: 131 AMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189
+ GK D+ LF M ++ D S+N ++ S+R+E A+++F L+ R
Sbjct: 135 RYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELF-RALRGRFSV 193
Query: 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249
VT+ ++ G CL R +AL++ ++M+ + P+ + +++KG G++ A F
Sbjct: 194 DTVTYNVILNGWCLIKRTPKALEVLKEMVE-RGINPNLTTYNTMLKGFFRAGQIRHAWEF 252
Query: 250 KEEMVRNKIEMD 261
EM + E+D
Sbjct: 253 FLEMKKRDCEID 264
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 6/201 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y ++ G A + + ++ + V+P + +I + +E+A+ +
Sbjct: 264 DVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVATYNAMIQVLCKKDNVENAVVM 322
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F+EM + V ++N L+ + G+ R +L Q ME + P+ +YN+++
Sbjct: 323 FEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSE 382
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE---ALKLKEDMMRVYNVKP 225
+E A +F++M P L T+ LI G+ + R ++ A KL +M+ P
Sbjct: 383 CSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVE-RGFIP 441
Query: 226 DAQVFASLIKGLCAVGELSLA 246
F ++ GL G + A
Sbjct: 442 RKFTFNRVLNGLLLTGNQAFA 462
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHAL 107
R N++ Y+ ++T L + + +L + R+ P I F +I + + L A
Sbjct: 220 RPNVVTYNALVTGLCEIGRWGDAAWLLRDMM-KRRIEPNVITFTALIDAFVKVGKLMEAK 278
Query: 108 QVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-YVSPDACSYNILMHGC 166
++++ M +V V ++ +L+N + G +D +F +ME+ P+ Y L+HG
Sbjct: 279 ELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGF 338
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
S+R+ED K+F EM ++ + +T+ LI G CL R D A ++ + M PD
Sbjct: 339 CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEV-FNQMSSRRAPPD 397
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ + L+ GLC G++ AL E M K EMD
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYM--RKREMD 430
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y +I L + DE +Q+ + ++ + P E+I+ +I + +++ +E +++
Sbjct: 292 DVFTYGSLINGLCMYGLLDEARQMFYLMERNG-CYPNEVIYTTLIHGFCKSKRVEDGMKI 350
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
F EMS V ++ L+ G+ D ++F Q+ + PD +YN+L+ G
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++E A +F+ M KR + +VT+ +I G+C +V++A L + +KP+
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFS-KGMKPNVI 469
Query: 229 VFASLIKGLCAVG 241
+ ++I G C G
Sbjct: 470 TYTTMISGFCRRG 482
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
Query: 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126
F++ + ++ H +R +P I F ++S + + + +F++M + + + N
Sbjct: 64 FNDALDLFTRMVH-SRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122
Query: 127 TLLNAMLTCGKIDRMTD-LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185
+++ + + R + L ++M+ PD ++ L++G R+EDA +FD++L
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182
Query: 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245
+P +VT+ TLI LC ++ A++L + M +P+ + +L+ GLC +G
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVEL-FNQMGTNGSRPNVVTYNALVTGLCEIGRWGD 241
Query: 246 ALGFKEEMVRNKIE 259
A +M++ +IE
Sbjct: 242 AAWLLRDMMKRRIE 255
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + + +I + R L HA+++F++M + + V ++N L+ + G+ L
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245
Query: 145 FQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
+ +M++ + P+ ++ L+ V +L +A ++++ M++ + P + T+G+LI GLC+
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCM 305
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
+DEA ++ M R P+ ++ +LI G C
Sbjct: 306 YGLLDEARQMFYLMER-NGCYPNEVIYTTLIHGFC 339
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I ++K ++ +I +++ VV I + +I Y + A +VF++M
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKG-VVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRL 172
SS ++++N LL+ + GK+++ +F+ M K + + +Y I++ G ++
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKV 449
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKED 216
EDA+ +F + + ++P ++T+ T+I G C + EA K+KED
Sbjct: 450 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKED 497
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
+LG+ + ++ +IL + VP+ I + +IS Y +A + +AL V D MS V
Sbjct: 149 RLGKTRKAAKILEILE----GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VS 201
Query: 120 RTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178
V ++NT+L ++ GK+ + M L +++++ PD +Y IL+ + A K+
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261
Query: 179 FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
DEM R P +VT+ L+ G+C E R+DEA+K DM +P+ +++ +C
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS-SGCQPNVITHNIILRSMC 320
Query: 239 AVGELSLALGFKEEMVR 255
+ G A +M+R
Sbjct: 321 STGRWMDAEKLLADMLR 337
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 109/207 (52%), Gaps = 5/207 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQL-KHDTRVVPEEIIFCNVISFYGRARLL 103
K F +++ ++++I L R + IL ++ +H + P + + ++ + + + +
Sbjct: 338 KGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQ--PNSLSYNPLLHGFCKEKKM 395
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
+ A++ + M S + ++NT+L A+ GK++ ++ Q+ K SP +YN +
Sbjct: 396 DRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTV 455
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+ G + + A K+ DEM + L+P +T+ +L+ GL E +VDEA+K + R+
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM-G 514
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGF 249
++P+A F S++ GLC + A+ F
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDF 541
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 3/221 (1%)
Query: 43 PLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102
P + N++ +++I+ + + + +++L + P + F +I+F R L
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGL 359
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNI 161
L A+ + ++M Q S+N LL+ K+DR + + M + PD +YN
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNT 419
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
++ ++EDA ++ +++ + P L+T+ T+I GL + +A+KL D MR
Sbjct: 420 MLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLL-DEMRAK 478
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
++KPD ++SL+ GL G++ A+ F E R I +A
Sbjct: 479 DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNA 519
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQ-LKHDTRVVPEEIIFCNVISFYGRARLLEHALQ 108
+++ Y+ I+ L + + ++L + L+ D P+ I + +I R + HA++
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD--CYPDVITYTILIEATCRDSGVGHAMK 260
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCV 167
+ DEM V ++N L+N + G++D M P+ ++NI++
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+ R DA K+ +ML++ P++VTF LI LC + + A+ + E M + + +P++
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQ-HGCQPNS 379
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMV 254
+ L+ G C ++ A+ + E MV
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMV 406
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226
V + LE+ +K + M+ P ++ TLI G C + +A K+ E ++ PD
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE-ILEGSGAVPD 171
Query: 227 AQVFASLIKGLCAVGELSLALGFKEEM 253
+ +I G C GE++ AL + M
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM 198
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSYNILMHGCVVSRRLEDAWKVFDE 181
N L M+ G+++ + F+ +E V PD L+ G + A K+ +
Sbjct: 106 NNHLRQMVRTGELE---EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162
Query: 182 MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ P ++T+ +I G C ++ AL + + M +V PD + ++++ LC G
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSG 218
Query: 242 ELSLALGFKEEMVR 255
+L A+ + M++
Sbjct: 219 KLKQAMEVLDRMLQ 232
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 103/199 (51%), Gaps = 15/199 (7%)
Query: 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125
MFD++ + ++ P +I+ +I +++ +++AL + + M + V ++
Sbjct: 173 MFDQMVGMGYK--------PNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTY 224
Query: 126 NTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184
N+L++ + + G+ T + M K + PD ++N L+ CV R+ +A + ++EM++
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR 284
Query: 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244
R L P +VT+ LIYGLC+ R+DEA ++ M+ PD ++ LI G C ++
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSK-GCFPDVVTYSILINGYCKSKKVE 343
Query: 245 LALGFKEEM-----VRNKI 258
+ EM VRN +
Sbjct: 344 HGMKLFCEMSQRGVVRNTV 362
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
++ N++ Y+ II L ++K D +L++++ D + P+ + + ++IS + A
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDG-IGPDVVTYNSLISGLCSSGRWSDA 240
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHG 165
++ M+ + V +FN L++A + G++ + ++ ++ + + PD +Y++L++G
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300
Query: 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
+ RL++A ++F M+ + P +VT+ LI G C +V+ +KL +M + V
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ-RGVVR 359
Query: 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
+ + LI+G C G+L++A EE+ R +
Sbjct: 360 NTVTYTILIQGYCRAGKLNVA----EEIFRRMV 388
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQVFDEMSS 115
+++ + + K +D V + Q++ +P + CN++ + + R L AL +M
Sbjct: 87 LLSAISKMKKYDVVIYLWEQMQ--MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIK 144
Query: 116 FNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRR 171
+ ++ +F +LLN + DR+ D + ++ V P+ YN ++ G S++
Sbjct: 145 LGHEPSIVTFGSLLNGFC---RGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQ 201
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+++A + + M K + P +VT+ +LI GLC R +A ++ M + + PD F
Sbjct: 202 VDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYPDVFTFN 260
Query: 232 SLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+LI G +S A F EEM+R ++ D
Sbjct: 261 ALIDACVKEGRVSEAEEFYEEMIRRSLDPD 290
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y L+I L DE +++ + P+ + + +I+ Y +++ +EH +++
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG-CFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
F EMS V R ++ L+ GK++ ++F+ M V P+ +YN+L+HG
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCD 408
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++E A + +M K + +VT+ +I G+C V +A + + + PD
Sbjct: 409 NGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCS-LNCQGLMPDIW 467
Query: 229 VFASLIKGL 237
+ +++ GL
Sbjct: 468 TYTTMMLGL 476
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 95/199 (47%), Gaps = 4/199 (2%)
Query: 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124
K+ D + H ++ R +P F ++S + + + + ++++M + + +
Sbjct: 61 KLDDSLDLFFHMVQ--CRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCT 118
Query: 125 FNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
N LLN C ++ ++ L ++++ P ++ L++G R+ DA +FD+M+
Sbjct: 119 CNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV 178
Query: 184 KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243
+P +V + T+I GLC +VD AL L M + + PD + SLI GLC+ G
Sbjct: 179 GMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKD-GIGPDVVTYNSLISGLCSSGRW 237
Query: 244 SLALGFKEEMVRNKIEMDA 262
S A M + +I D
Sbjct: 238 SDATRMVSCMTKREIYPDV 256
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
L+ A ++F M S V +++ L+N K++ LF ++ ++ V + +Y I
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G + +L A ++F M+ + P ++T+ L++GLC ++++AL + DM +
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK-N 425
Query: 222 NVKPDAQVFASLIKGLCAVGELSLA 246
+ D + +I+G+C GE++ A
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADA 450
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 106/205 (51%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ Y +++ L + D +L +++ ++ P +I+ +I + + AL +
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQG-KIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F EM + ++ V ++N+L+ + G+ + L M E+ ++P+ +++ L+ V
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+L +A K++DEM+KR + P + T+ +LI G C+ R+DEA + E +M + P+
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVV 397
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LIKG C + + EM
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREM 422
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 119/238 (50%), Gaps = 3/238 (1%)
Query: 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84
AL +KN N N K R N++ Y+ +I L + + ++L + + ++
Sbjct: 265 ALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI-ERKIN 323
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P + F +I + + L A +++DEM ++ + ++++L+N ++D +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 145 FQIM-EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F++M K P+ +YN L+ G ++R+++ ++F EM +R L VT+ TLI+G
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
D A + + M+ V PD ++ L+ GLC G++ AL E + R+K+E D
Sbjct: 444 ARECDNAQIVFKQMVS-DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPD 500
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 110/214 (51%), Gaps = 3/214 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y+ +I +AK DE ++ ++ +V + + +I + +AR ++A V
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQ-RGLVGNTVTYTTLIHGFFQARECDNAQIV 453
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + +++ LL+ + GK++ +F+ +++ + PD +YNI++ G
Sbjct: 454 FKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCK 513
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
+ ++ED W +F + + ++P +VT+ T++ G C + +EA L + M+ PD+
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE-MKEEGPLPDSG 572
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
+ +LI+ G+ + + EM + DA
Sbjct: 573 TYNTLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 7/215 (3%)
Query: 49 YNLLHYD---LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEH 105
++ + YD + I +L K+ D V +K +R P + F ++S + +
Sbjct: 42 FSGVRYDYRKISINRLNDLKLDDAVNLFGDMVK--SRPFPSIVEFSKLLSAIAKMNKFDL 99
Query: 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID-RMTDLFQIMEKYVSPDACSYNILMH 164
+ + ++M + + + +++ L+N ++ + L ++M+ PD + N L++
Sbjct: 100 VISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
G R+ DA + +M++ QP TF TLI+GL R EA+ L D M V +
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV-DRMVVKGCQ 218
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
PD + ++ GLC G++ LAL ++M + KIE
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+PF +++ + +++ + + FD V + Q++ + + + +I+ + R L
Sbjct: 76 RPFP-SIVEFSKLLSAIAKMNKFDLVISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLS 133
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILM 163
AL V +M + + + N+LLN +I D ++ + Q++E PD+ ++N L+
Sbjct: 134 LALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLI 193
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
HG R +A + D M+ + QP LVT+G ++ GLC +D AL L + M + +
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQ-GKI 252
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+P ++ ++I LC ++ AL EM
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEM 282
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + + V++ + ++ AL + +M ++ V +NT+++A+ ++ +L
Sbjct: 219 PDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNL 278
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F M+ K + P+ +YN L+ R DA ++ +M++R++ P +VTF LI
Sbjct: 279 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK 338
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA KL ++M++ ++ PD ++SLI G C
Sbjct: 339 EGKLVEAEKLYDEMIK-RSIDPDIFTYSSLINGFC 372
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Query: 137 KIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195
K+D +LF M K P ++ L+ + + + ++M + L T+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255
LI C ++ AL + MM++ +PD SL+ G C +S A+ +MV
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 256 NKIEMDA 262
+ D+
Sbjct: 180 MGYQPDS 186
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+DL++ + +M DE + + +K E CN +++ R +E+A + +
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTET--CNHILTLLSRLNRIENAWVFYAD 215
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRR 171
M ++ V +FN ++N + GK+ + IME + + P +YN L+ G + R
Sbjct: 216 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGR 275
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E A + EM + QP + T+ ++ +C E R E L+ M+ + PD+ +
Sbjct: 276 IEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLR----EMKEIGLVPDSVSYN 331
Query: 232 SLIKGLCAVGELSLALGFKEEMVR 255
LI+G G+L +A +++EMV+
Sbjct: 332 ILIRGCSNNGDLEMAFAYRDEMVK 355
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 10/200 (5%)
Query: 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119
KL +AK F + ++ + P + + ++ + +E A + EM S Q
Sbjct: 240 KLKKAKGFLGIMEVFG-------IKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292
Query: 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179
++++N +L+ M G+ + L ++ E + PD+ SYNIL+ GC + LE A+
Sbjct: 293 PDMQTYNPILSWMCNEGRASEV--LREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYR 350
Query: 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239
DEM+K+ + PT T+ TLI+GL +E +++ A L + +R + D+ + LI G C
Sbjct: 351 DEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIRE-IREKGIVLDSVTYNILINGYCQ 409
Query: 240 VGELSLALGFKEEMVRNKIE 259
G+ A +EM+ + I+
Sbjct: 410 HGDAKKAFALHDEMMTDGIQ 429
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 12/213 (5%)
Query: 45 KPFRYNLLHYDLIITKL---GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
K F+ ++ Y+ I++ + GRA ++L ++K + +VP+ + + +I
Sbjct: 289 KGFQPDMQTYNPILSWMCNEGRA------SEVLREMK-EIGLVPDSVSYNILIRGCSNNG 341
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYN 160
LE A DEM + T ++NTL++ + KI+ L +I EK + D+ +YN
Sbjct: 342 DLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
IL++G + A+ + DEM+ +QPT T+ +LIY LC + + EA +L E ++
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVG- 460
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+KPD + +L+ G CA+G + A +EM
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 2/187 (1%)
Query: 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128
E +IL + + +V + + + +I+ Y + + A + DEM + +Q T ++ +L
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSL 438
Query: 129 LNAMLTCGKIDRMTDLFQ-IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187
+ + K +LF+ ++ K + PD N LM G ++ A+ + EM +
Sbjct: 439 IYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSI 498
Query: 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247
P VT+ L+ GLC E + +EA +L +M R +KPD + +LI G G+ A
Sbjct: 499 NPDDVTYNCLMRGLCGEGKFEEARELMGEMKR-RGIKPDHISYNTLISGYSKKGDTKHAF 557
Query: 248 GFKEEMV 254
++EM+
Sbjct: 558 MVRDEML 564
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 6/183 (3%)
Query: 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133
LH + P + + ++I R A ++F+++ ++ + NTL++
Sbjct: 419 LHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHC 478
Query: 134 TCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV 192
G +DR L + M+ ++PD +YN LM G + E+A ++ EM +R ++P +
Sbjct: 479 AIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHI 538
Query: 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252
++ TLI G + A ++++M+ + P + +L+KGL E LA EE
Sbjct: 539 SYNTLISGYSKKGDTKHAFMVRDEMLSL-GFNPTLLTYNALLKGLSKNQEGELA----EE 593
Query: 253 MVR 255
++R
Sbjct: 594 LLR 596
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 10/213 (4%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
LKP N Y I+ A F + + +++ + V+P +++ +I+ Y + +
Sbjct: 518 LKP---NAFTYGAFISGYIEASEFASADKYVKEMR-ECGVLPNKVLCTGLINEYCKKGKV 573
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNIL 162
A + M + K++ L+N + K+D ++F+ M K ++PD SY +L
Sbjct: 574 IEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVL 633
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKE--DMMRV 220
++G ++ A +FDEM++ L P ++ + L+ G C R E K KE D M V
Sbjct: 634 INGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFC---RSGEIEKAKELLDEMSV 690
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253
+ P+A + ++I G C G+L+ A +EM
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEM 723
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI 161
++ A ++F EM + V S+ L+N G + + + +F +++E+ ++P+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
L+ G S +E A ++ DEM + L P VT+ T+I G C + EA +L D M++
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLF-DEMKLK 726
Query: 222 NVKPDAQVFASLIKGLCAVGELSLAL 247
+ PD+ V+ +L+ G C + ++ A+
Sbjct: 727 GLVPDSFVYTTLVDGCCRLNDVERAI 752
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +++ L + D+ ++I +++ + P+ + +I+ + + ++ A +FDEM
Sbjct: 595 YTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRRL 172
+ V +N LL G+I++ +L M K + P+A +Y ++ G S L
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
+A+++FDEM + L P + TL+ G C V+ A+ +
Sbjct: 714 AEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI 754
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 108/243 (44%), Gaps = 41/243 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N++ Y++++ R+ ++ +++L ++ + P + +C +I Y ++ L A ++
Sbjct: 661 NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG-LHPNAVTYCTIIDGYCKSGDLAEAFRL 719
Query: 110 FDEM-------SSF-------------NVQRTV--------------KSFNTLLNAMLTC 135
FDEM SF +V+R + FN L+N +
Sbjct: 720 FDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKF 779
Query: 136 GKIDRMTDLFQIM-----EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190
GK + T++ + +++ P+ +YNI++ LE A ++F +M L PT
Sbjct: 780 GKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPT 839
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
++T+ +L+ G R E + ++ + ++PD +++ +I G + AL
Sbjct: 840 VITYTSLLNGYDKMGRRAEMFPVFDEAIAA-GIEPDHIMYSVIINAFLKEGMTTKALVLV 898
Query: 251 EEM 253
++M
Sbjct: 899 DQM 901
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 3/210 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y +I R K + ++L ++K +V + V+ + L+ A + EM
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEM 443
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172
+ + V + TL+ L + D M L ++ E+ ++PD YN L+ G ++R+
Sbjct: 444 IASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503
Query: 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232
++A EM++ L+P T+G I G A K ++ MR V P+ +
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE-MRECGVLPNKVLCTG 562
Query: 233 LIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
LI C G++ A MV I DA
Sbjct: 563 LINEYCKKGKVIEACSAYRSMVDQGILGDA 592
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 90/195 (46%), Gaps = 6/195 (3%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
+ L P +Y YD++I L + K ++ + +L ++ V + + +I + R
Sbjct: 271 KGLVPLKYT---YDVLIDGLCKIKRLEDAKSLLVEM-DSLGVSLDNHTYSLLIDGLLKGR 326
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
+ A + EM S + ++ + M G +++ LF M + P A +Y
Sbjct: 327 NADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYA 386
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
L+ G + + +++ EM KR + + T+GT++ G+C +D A + ++M+
Sbjct: 387 SLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI-A 445
Query: 221 YNVKPDAQVFASLIK 235
+P+ ++ +LIK
Sbjct: 446 SGCRPNVVIYTTLIK 460
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/251 (19%), Positives = 94/251 (37%), Gaps = 41/251 (16%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
++ Y ++I + + I ++ + + P II+ ++ + R+ +E A ++
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVV 168
DEMS + ++ T+++ G + LF M+ K + PD+ Y L+ GC
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
Query: 169 SRRLEDAWKVF--------------------------------------DEMLKRRLQPT 190
+E A +F D R +P
Sbjct: 745 LNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPN 804
Query: 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250
VT+ +I LC E ++ A +L M N+ P + SL+ G +G +
Sbjct: 805 DVTYNIMIDYLCKEGNLEAAKELFHQMQNA-NLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
Query: 251 EEMVRNKIEMD 261
+E + IE D
Sbjct: 864 DEAIAAGIEPD 874
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 42/219 (19%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A PF L+++ + K G+ ++ EV L D P ++ + +I + +
Sbjct: 763 ASSTAPFN-ALINW---VFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKE 818
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160
LE A ++F +M + N+ TV ++ +LLN D+M
Sbjct: 819 GNLEAAKELFHQMQNANLMPTVITYTSLLNGY------DKM------------------- 853
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
RR E + VFDE + ++P + + +I E +AL L + M
Sbjct: 854 --------GRRAE-MFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 221 YNVKPDAQVFAS----LIKGLCAVGELSLALGFKEEMVR 255
V ++ S L+ G VGE+ +A E MVR
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVR 943
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 42 QPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101
Q + P ++ Y+ +I L +AK DE + L ++ + + P + IS Y A
Sbjct: 481 QGIAP---DIFCYNSLIIGLSKAKRMDEARSFLVEMVENG-LKPNAFTYGAFISGYIEAS 536
Query: 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYN 160
A + EM V L+N GK+ ++ M ++ + DA +Y
Sbjct: 537 EFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYT 596
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220
+LM+G + +++DA ++F EM R
Sbjct: 597 VLMNGLFKNDKVDDAEEIFREM------------------------------------RG 620
Query: 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ PD + LI G +G + A +EMV
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV 654
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 72/160 (45%), Gaps = 7/160 (4%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y+++I L + + +++ HQ+++ ++P I + ++++ Y + V
Sbjct: 804 NDVTYNIMIDYLCKEGNLEAAKELFHQMQN-ANLMPTVITYTSLLNGYDKMGRRAEMFPV 862
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNI-----LM 163
FDE + ++ ++ ++NA L G + L Q+ K D C +I L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
G +E A KV + M++ + P T LI C+
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCI 962
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 23/159 (14%)
Query: 125 FNTLLNAMLTCGKIDRMTDLFQI-MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183
F L + + G I+ +F M + P +L+ + RL+ W V+ M+
Sbjct: 154 FGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213
Query: 184 KRRLQPTLVTFGTLIYGLC---------------------LELRVDEALKLKEDMMRVYN 222
+R + + T+ LI C L VD ALKLKE M+
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI-CKG 272
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ P + LI GLC + L A EM + +D
Sbjct: 273 LVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 80/334 (23%)
Query: 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNN----TEAQPLKP-FRYNLLHYDLI 57
K+ +S F L SL QK + L L K+ N NP+ + L P + + + + +
Sbjct: 23 KSSSSSIFTLKSLTSKQKKSRDTLSLLKSEN-NPDRILEICRSTSLSPDYHVDRIIFSVA 81
Query: 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN 117
+ L R K F V Q+L + E I YGRA +L+ ++Q F + +
Sbjct: 82 VVTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYE 141
Query: 118 VQRTVKSFNTLLNAMLTCGKIDRMTDLF-------------------------------- 145
+ RTVKS N LL A L ++
Sbjct: 142 IPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSS 201
Query: 146 -----QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV---------------------- 178
++ K++ P A S+ +++ G + ++ KV
Sbjct: 202 YSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQC 261
Query: 179 -------------FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225
D ++ R++P VT+ LI+G C E +DEA+ L E +M KP
Sbjct: 262 LCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFE-VMVCNGYKP 320
Query: 226 DAQVFASLIKGLCAVGELSLALGF-KEEMVRNKI 258
D++ + +LI LC G+ AL +E M +N +
Sbjct: 321 DSECYFTLIHCLCKGGDFETALILCRESMEKNWV 354
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 4/162 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLLEHALQVFDE 112
+ L+I + + FDEV++++ + D V + N+ I + + A + D
Sbjct: 220 FGLMIDGFYKEEKFDEVRKVMRMM--DEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDG 277
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNILMHGCVVSRR 171
+ S ++ +++ L++ + +D +LF++M PD+ Y L+H
Sbjct: 278 VMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGD 337
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
E A + E +++ P+ L+ GL +VDEA +L
Sbjct: 338 FETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKEL 379
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 109/200 (54%), Gaps = 3/200 (1%)
Query: 40 EAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99
E +K + +L+ Y +I L + D +L++++ ++ + +I+ VI +
Sbjct: 194 ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG-KIEADVVIYSTVIDSLCK 252
Query: 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ-IMEKYVSPDACS 158
R ++ AL +F EM + ++ V ++++L++ + G+ + L ++E+ ++P+ +
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVT 312
Query: 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
+N L+ +L +A K+FDEM++R + P +VT+ +LI G C+ R+DEA ++ +M
Sbjct: 313 FNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LM 371
Query: 219 RVYNVKPDAQVFASLIKGLC 238
+ PD + +LI G C
Sbjct: 372 VSKDCLPDVVTYNTLINGFC 391
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 110/218 (50%), Gaps = 11/218 (5%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ +I +AK + ++ + +V + + +I + +A ++A V
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSR-RGLVGNTVTYTTLIHGFFQASDCDNAQMV 437
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVV 168
F +M S V + ++NTLL+ + GK+++ +F+ ++K + PD +YNI+ G
Sbjct: 438 FKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCK 497
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA----LKLKEDMMRVYNVK 224
+ ++ED W +F + + ++P ++ + T+I G C + +EA +K+KED
Sbjct: 498 AGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED-----GPL 552
Query: 225 PDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
PD+ + +LI+ G+ + + +EM + DA
Sbjct: 553 PDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDA 590
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 127/281 (45%), Gaps = 52/281 (18%)
Query: 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLK 78
+ +P LAL L N E ++ +++ Y +I L + + D+ + ++
Sbjct: 218 RGEPDLALNLL-------NKMEKGKIEA---DVVIYSTVIDSLCKYRHVDDALNLFTEMD 267
Query: 79 HDTRVVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135
+ + P+ + ++IS YGR A ++ +M + V +FN+L++A
Sbjct: 268 -NKGIRPDVFTYSSLISCLCNYGR---WSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 136 GKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194
GK+ LF +++++ + P+ +YN L++G + RL++A ++F M+ + P +VT+
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 195 GTLIYGLCLELRVDEALKLKEDMMR--------VY------------------------- 221
TLI G C +V + ++L DM R Y
Sbjct: 384 NTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 222 -NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V P+ + +L+ GLC G+L A+ E + ++K+E D
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD 484
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 6/219 (2%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-ISFYGRARLL 103
+PF +++ + +++ + + K FD V I K + V + N+ I+ R L
Sbjct: 60 RPFP-SIVEFSKLLSAIAKMKKFDLV--ISFGEKMEILGVSHNLYTYNIMINCLCRRSQL 116
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNIL 162
AL + +M ++ + N+LLN +I L Q++E PD ++ L
Sbjct: 117 SFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTL 176
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+HG + +A + + M+ + QP LVT+G +I GLC D AL L M +
Sbjct: 177 VHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG-K 235
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ D +++++I LC + AL EM I D
Sbjct: 236 IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 2/176 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+ + F ++ + A+ + + M Q + ++ ++N + G+ D +L
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227
Query: 145 FQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
MEK + D Y+ ++ R ++DA +F EM + ++P + T+ +LI LC
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
R +A +L DM+ + P+ F SLI G+L A +EM++ I+
Sbjct: 288 YGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 112/214 (52%), Gaps = 5/214 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N+ ++++ L + ++V L Q++ + V P+ + + +IS Y L+E A ++
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDIVTYNTLISAYSSKGLMEEAFEL 292
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY-NILMHGCV 167
+ M V ++NT++N + GK +R ++F +++ +SPD+ +Y ++LM C
Sbjct: 293 MNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACK 352
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227
+E KVF +M R + P LV F +++ +D+AL + + ++ + PD
Sbjct: 353 KGDVVETE-KVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDN 410
Query: 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
++ LI+G C G +S+A+ + EM++ MD
Sbjct: 411 VIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 104/205 (50%), Gaps = 3/205 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+++ Y+ I+ L + KM E ++ +++ + + P+ +I + + L++A+++
Sbjct: 444 DVVTYNTILHGLCKRKMLGEADKLFNEMT-ERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNILMHGCVV 168
F +M ++ V ++NTLL+ G ID +++ M K + P SY+IL++
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCS 562
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L +A++V+DEM+ + ++PT++ ++I G C + E M+ V PD
Sbjct: 563 KGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCI 621
Query: 229 VFASLIKGLCAVGELSLALGFKEEM 253
+ +LI G +S A G ++M
Sbjct: 622 SYNTLIYGFVREENMSKAFGLVKKM 646
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 5/192 (2%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-VISFYGRARLLEHALQVFDE 112
+DL+I +A+ E + L+ V I CN +I R +E A V+ E
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRSKGFTV--SIDACNALIGSLVRIGWVELAWGVYQE 225
Query: 113 MSSFNVQRTVKSFNTLLNAMLTCGKIDRM-TDLFQIMEKYVSPDACSYNILMHGCVVSRR 171
+S V V + N ++NA+ GK++++ T L Q+ EK V PD +YN L+
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231
+E+A+++ + M + P + T+ T+I GLC + + A ++ +M+R + PD+ +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR-SGLSPDSTTYR 344
Query: 232 SLIKGLCAVGEL 243
SL+ C G++
Sbjct: 345 SLLMEACKKGDV 356
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 11/223 (4%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
K R +++ Y+ ++ G+ D ++I + ++P I + +++ L
Sbjct: 509 KRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV-SKEILPTPISYSILVNALCSKGHLA 567
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYN 160
A +V+DEM S N++ TV N+++ G +D +EK +S PD SYN
Sbjct: 568 EAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN---ASDGESFLEKMISEGFVPDCISYN 624
Query: 161 ILMHGCVVSRRLEDAWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218
L++G V + A+ + +M + + L P + T+ ++++G C + ++ EA + M+
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMI 684
Query: 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
V PD + +I G + L+ A +EM++ D
Sbjct: 685 E-RGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDAC 157
+ ++L A ++F+EM+ + + L++ G + +LFQ M EK + D
Sbjct: 457 KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVV 516
Query: 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217
+YN L+ G ++ A +++ +M+ + + PT +++ L+ LC + + EA ++ ++M
Sbjct: 517 TYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576
Query: 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
+ N+KP + S+IKG C G S F E+M+
Sbjct: 577 IS-KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMI 612
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 108/211 (51%), Gaps = 3/211 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
+L+ + +++ R+ D+ + +K + ++P+ +I+ +I Y R ++ A+ +
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVK-EAGLIPDNVIYTILIQGYCRKGMISVAMNL 432
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVV 168
+EM V ++NT+L+ + + LF ++ E+ + PD+ + IL+ G
Sbjct: 433 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCK 492
Query: 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228
L++A ++F +M ++R++ +VT+ TL+ G +D A ++ DM+ + P
Sbjct: 493 LGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS-KEILPTPI 551
Query: 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
++ L+ LC+ G L+ A +EM+ I+
Sbjct: 552 SYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 3/222 (1%)
Query: 41 AQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100
A P K F + Y+ +I L + ++ +++ ++ + + P+ + +++ +
Sbjct: 295 AMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLR-SGLSPDSTTYRSLLMEACKK 353
Query: 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSY 159
+ +VF +M S +V + F+++++ G +D+ F + E + PD Y
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
Query: 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219
IL+ G + A + +EML++ +VT+ T+++GLC + EA KL +M
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473
Query: 220 VYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+ PD+ LI G C +G L A+ ++M +I +D
Sbjct: 474 -RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLD 514
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 87/177 (49%), Gaps = 2/177 (1%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
VVP+ + F +++S + R+ L+ AL F+ + + + L+ G I
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAM 430
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
+L +++++ + D +YN ++HG + L +A K+F+EM +R L P T LI G
Sbjct: 431 NLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGH 490
Query: 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
C + A++L + M+ ++ D + +L+ G VG++ A +MV +I
Sbjct: 491 CKLGNLQNAMELFQK-MKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 7/223 (3%)
Query: 26 LQLFKNPNPNPNNTEAQP-LKPFRY---NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81
+ +FK PN + +P L P + + ++ L+ + ++ D + + + D
Sbjct: 386 VDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDD 445
Query: 82 RVV-PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140
R P+E+ + V+S + A L++ A QV EM+ V ++N LL +IDR
Sbjct: 446 RNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDR 505
Query: 141 MTDLFQIM--EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
DL + M + + PD SYNI++ GC++ A F+EM R + PT +++ TL+
Sbjct: 506 AEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLM 565
Query: 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241
+ + A ++ ++MM VK D + L++G C +G
Sbjct: 566 KAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLG 608
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 2/177 (1%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQV 109
N + Y++++ + D + +L ++ D + P+ + + +I AL
Sbjct: 486 NRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAF 545
Query: 110 FDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM--EKYVSPDACSYNILMHGCV 167
F+EM + + T S+ TL+ A G+ +F M + V D ++N+L+ G
Sbjct: 546 FNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYC 605
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224
+EDA +V M + P + T+G+L G+ + +AL L +++ VK
Sbjct: 606 RLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVK 662
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182
+FN +LNA G D+ LF+ M ++ PD +YN+++ C R E V + +
Sbjct: 238 AFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERI 297
Query: 183 LKRRLQPTLVTFGTLI 198
+ + ++ + T +L+
Sbjct: 298 IDKGIKVCMTTMHSLV 313
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD ++N +++ C + WK+F+EM + +P ++T+ +I LC + E +
Sbjct: 234 PDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIK-LCARVGRKELIVF 292
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246
+ + +K SL+ G+L A
Sbjct: 293 VLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTA 325
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQIL 74
L +L LAL +FK A+ K F++ +Y+ +I LG+ K F + ++
Sbjct: 101 LKKLSNAGVLALSVFK---------WAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLV 151
Query: 75 HQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134
+K + E F + Y RAR ++ A+ F +M F + FN +L+ +
Sbjct: 152 DDMKAKKLLSKE--TFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSK 209
Query: 135 CGKIDRMTDLFQIMEK-YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193
+ +F M+K PD SY IL+ G L +V EM +P +V
Sbjct: 210 SRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVA 269
Query: 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251
+G +I C + +EA++ +M + N KP +F SLI GL + +L+ AL F E
Sbjct: 270 YGIIINAHCKAKKYEEAIRFFNEMEQ-RNCKPSPHIFCSLINGLGSEKKLNDALEFFE 326
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 109/212 (51%), Gaps = 12/212 (5%)
Query: 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHA 106
F +++ Y +II +AK ++E + ++++ P IFC++I+ G + L A
Sbjct: 263 FEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRN-CKPSPHIFCSLINGLGSEKKLNDA 321
Query: 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----KYVSPDACSYNIL 162
L+ F+ S ++N L+ A RM D ++ ++ K V P+A +Y+I+
Sbjct: 322 LEFFERSKSSGFPLEAPTYNALVGAYCWS---QRMEDAYKTVDEMRLKGVGPNARTYDII 378
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
+H + +R ++A++V+ M +PT+ T+ ++ C + R+D A+K+ D M+
Sbjct: 379 LHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKI-WDEMKGKG 434
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254
V P +F+SLI LC +L A + EM+
Sbjct: 435 VLPGMHMFSSLITALCHENKLDEACEYFNEML 466
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113
Y++++ + D +I ++K V+P +F ++I+ L+ A + F+EM
Sbjct: 407 YEIMVRMFCNKERLDMAIKIWDEMKGKG-VLPGMHMFSSLITALCHENKLDEACEYFNEM 465
Query: 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK 150
++ F+ L +L G+ D++TDL M++
Sbjct: 466 LDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKMDR 502
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 114/218 (52%), Gaps = 3/218 (1%)
Query: 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLL 103
+K + +++ Y +I L +D+ ++L ++ ++P+ + F +I + + L
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG-RNIIPDVVTFSALIDVFVKEGKL 331
Query: 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM-EKYVSPDACSYNIL 162
A ++++EM + + ++N+L++ + +F +M K PD +Y+IL
Sbjct: 332 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391
Query: 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222
++ ++R++D ++F E+ + L P +T+ TL+ G C +++ A +L ++M+
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS-RG 450
Query: 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260
V P + L+ GLC GEL+ AL E+M ++++ +
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTL 488
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
Query: 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142
+ P+ I + ++I + + L A Q+FD M S + + +++ L+N+ ++D
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 143 DLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201
LF +I K + P+ +YN L+ G S +L A ++F EM+ R + P++VT+G L+ GL
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL 465
Query: 202 CLELRVDEALKLKEDMMR--------VYN--------------------------VKPDA 227
C +++AL++ E M + +YN VKPD
Sbjct: 466 CDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDV 525
Query: 228 QVFASLIKGLCAVGELSLA 246
+ +I GLC G LS A
Sbjct: 526 VTYNVMIGGLCKKGSLSEA 544
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 108/215 (50%), Gaps = 3/215 (1%)
Query: 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104
+ + +++ Y ++I L + FD+ + ++++ + + + + ++I +
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG-IKADVVTYSSLIGGLCNDGKWD 297
Query: 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILM 163
++ EM N+ V +F+ L++ + GK+ +L+ +++ + ++PD +YN L+
Sbjct: 298 DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357
Query: 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223
G L +A ++FD M+ + +P +VT+ LI C RVD+ ++L + + +
Sbjct: 358 DGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE-ISSKGL 416
Query: 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258
P+ + +L+ G C G+L+ A +EMV +
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Query: 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDL 144
P+E+ + V++ ++ AL +F +M N++ +V ++ +++++ G D L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 145 FQIME-KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203
F ME K + D +Y+ L+ G + +D K+ EM+ R + P +VTF LI
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238
E ++ EA +L +M+ + PD + SLI G C
Sbjct: 328 EGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFC 361
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213
PD +++ L++G + R+ +A + D M++ + +P LVT TLI GLCL+ RV EAL L
Sbjct: 138 PDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVL 197
Query: 214 KEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIE 259
+ M+ Y +PD + ++ LC G +LAL +M I+
Sbjct: 198 IDRMVE-YGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIK 242
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-K 150
N + GR + AL + D M + Q ++ +LN + G DLF+ ME +
Sbjct: 183 NGLCLKGR---VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239
Query: 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210
+ Y+I++ +DA +F+EM + ++ +VT+ +LI GLC + + D+
Sbjct: 240 NIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDG 299
Query: 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262
K+ +M+ N+ PD F++LI G+L A EM+ I D
Sbjct: 300 AKMLREMIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDT 350
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%)
Query: 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME-KYVSPDACSYNI 161
+ A+ +F+ M T FN L +A+ + D + + ME + D + I
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTI 110
Query: 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221
+++ ++L A+ V K +P +TF TL+ G CLE RV EA+ L + M+ +
Sbjct: 111 MINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMK 170
Query: 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261
+PD ++LI GLC G +S AL + MV + D
Sbjct: 171 Q-RPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPD 209
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 70/151 (46%), Gaps = 4/151 (2%)
Query: 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI-SFYGRARLLEHALQ 108
N + Y+ ++ ++ + +++ ++ +R VP ++ ++ L AL+
Sbjct: 419 NTITYNTLVLGFCQSGKLNAAKELFQEMV--SRGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCV 167
+F++M + + +N +++ M K+D LF + +K V PD +YN+++ G
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198
L +A +F +M + P T+ LI
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,790,357
Number of Sequences: 539616
Number of extensions: 3614994
Number of successful extensions: 15806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 11090
Number of HSP's gapped (non-prelim): 2283
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)