Query 037499
Match_columns 262
No_of_seqs 410 out of 1434
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 12:53:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.6E-46 1.4E-50 320.2 29.9 247 4-261 505-753 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.9E-45 4E-50 317.4 30.1 250 3-262 539-789 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.2E-42 2.5E-47 296.1 26.2 238 3-261 256-493 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.2E-41 4.8E-46 288.2 24.0 252 1-262 184-462 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.4E-40 1.4E-44 285.2 23.2 241 1-261 147-388 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.5E-39 5.5E-44 281.5 25.4 235 3-256 219-453 (857)
7 PRK11788 tetratricopeptide rep 99.9 7.6E-22 1.6E-26 158.5 27.0 235 10-261 111-352 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.1E-21 2.4E-26 157.5 26.1 243 2-256 65-311 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.9E-19 6.2E-24 157.6 28.9 236 3-256 564-799 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-19 7.9E-24 156.9 27.3 235 3-254 632-898 (899)
11 PRK15174 Vi polysaccharide exp 99.8 5.9E-17 1.3E-21 137.2 28.8 236 2-254 106-345 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 4.5E-17 9.7E-22 137.9 27.5 236 5-256 330-571 (615)
13 PRK15174 Vi polysaccharide exp 99.8 1.3E-16 2.9E-21 135.1 27.6 237 2-256 140-381 (656)
14 KOG4626 O-linked N-acetylgluco 99.8 2E-17 4.2E-22 131.7 18.5 239 2-261 248-488 (966)
15 PF13429 TPR_15: Tetratricopep 99.8 1.8E-17 3.9E-22 127.1 13.6 234 3-254 41-275 (280)
16 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-15 1.1E-19 125.5 28.7 163 89-255 333-495 (615)
17 KOG4626 O-linked N-acetylgluco 99.7 7.4E-16 1.6E-20 122.8 19.3 233 4-255 216-450 (966)
18 PRK09782 bacteriophage N4 rece 99.7 2.3E-14 5E-19 124.9 27.7 234 5-261 476-709 (987)
19 TIGR02521 type_IV_pilW type IV 99.7 1.2E-13 2.5E-18 102.9 26.8 201 49-255 29-231 (234)
20 PRK11447 cellulose synthase su 99.7 4.7E-14 1E-18 127.1 28.2 239 9-261 464-746 (1157)
21 TIGR02521 type_IV_pilW type IV 99.7 7.3E-14 1.6E-18 104.0 23.3 198 8-219 33-231 (234)
22 PRK11447 cellulose synthase su 99.7 7.6E-14 1.7E-18 125.8 27.5 238 2-256 381-700 (1157)
23 PF13429 TPR_15: Tetratricopep 99.7 1.4E-15 3E-20 116.7 13.7 202 3-219 75-276 (280)
24 PRK12370 invasion protein regu 99.7 9.6E-14 2.1E-18 115.9 25.5 217 20-255 275-501 (553)
25 COG2956 Predicted N-acetylgluc 99.7 6.2E-14 1.3E-18 103.7 21.1 231 16-260 45-282 (389)
26 KOG4422 Uncharacterized conser 99.7 7.6E-14 1.6E-18 107.0 21.9 241 2-258 203-464 (625)
27 PRK09782 bacteriophage N4 rece 99.7 2.1E-13 4.5E-18 119.1 27.1 225 11-255 514-739 (987)
28 PRK12370 invasion protein regu 99.7 9.3E-14 2E-18 116.0 23.8 236 2-257 291-536 (553)
29 KOG1126 DNA-binding cell divis 99.7 9.5E-15 2E-19 117.2 16.4 243 7-255 354-619 (638)
30 COG2956 Predicted N-acetylgluc 99.6 4.8E-13 1E-17 99.1 23.0 210 2-220 65-278 (389)
31 PRK10747 putative protoheme IX 99.6 1.1E-12 2.4E-17 105.3 26.6 221 14-255 126-389 (398)
32 TIGR00540 hemY_coli hemY prote 99.6 3.2E-12 6.8E-17 103.2 26.6 230 11-254 123-397 (409)
33 PRK10747 putative protoheme IX 99.6 2.4E-12 5.3E-17 103.3 25.4 221 17-261 95-360 (398)
34 PRK10049 pgaA outer membrane p 99.6 1.4E-12 3E-17 112.9 25.3 233 8-256 51-339 (765)
35 KOG1155 Anaphase-promoting com 99.6 9.1E-13 2E-17 102.0 21.2 228 14-255 235-494 (559)
36 KOG1129 TPR repeat-containing 99.6 3.8E-13 8.3E-18 99.9 17.9 233 10-261 227-461 (478)
37 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.7E-18 110.9 15.9 205 1-220 416-620 (638)
38 PRK14574 hmsH outer membrane p 99.6 1.2E-11 2.5E-16 106.3 27.9 230 11-255 73-395 (822)
39 PRK10049 pgaA outer membrane p 99.6 8.4E-12 1.8E-16 108.2 26.8 232 9-256 18-301 (765)
40 PF13041 PPR_2: PPR repeat fam 99.5 2.4E-14 5.2E-19 79.2 6.2 49 154-202 1-49 (50)
41 KOG1155 Anaphase-promoting com 99.5 1.9E-11 4E-16 94.9 23.4 235 6-253 262-533 (559)
42 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.6E-15 88.8 26.2 227 19-261 97-395 (400)
43 TIGR00540 hemY_coli hemY prote 99.5 7.6E-11 1.6E-15 95.2 27.0 228 16-261 94-369 (409)
44 PF13041 PPR_2: PPR repeat fam 99.5 8.7E-14 1.9E-18 77.0 6.4 49 85-133 1-49 (50)
45 COG3063 PilF Tfp pilus assembl 99.5 5.1E-11 1.1E-15 84.5 21.2 196 52-253 36-233 (250)
46 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-10 3E-15 89.5 25.3 224 18-257 38-266 (296)
47 COG3063 PilF Tfp pilus assembl 99.5 3.1E-10 6.7E-15 80.6 24.3 169 87-258 35-204 (250)
48 KOG1840 Kinesin light chain [C 99.5 1.4E-11 3.1E-16 99.5 19.8 243 7-254 200-477 (508)
49 KOG1173 Anaphase-promoting com 99.5 2.7E-11 5.9E-16 96.0 20.0 220 2-239 308-534 (611)
50 KOG2003 TPR repeat-containing 99.5 2.1E-11 4.5E-16 94.8 18.9 210 15-242 499-709 (840)
51 PRK11189 lipoprotein NlpI; Pro 99.5 7E-11 1.5E-15 91.1 21.6 205 7-232 65-275 (296)
52 PRK14574 hmsH outer membrane p 99.4 5.6E-10 1.2E-14 96.2 27.1 168 3-186 31-199 (822)
53 KOG4422 Uncharacterized conser 99.4 2.2E-10 4.9E-15 88.4 21.0 208 49-261 205-432 (625)
54 KOG1173 Anaphase-promoting com 99.4 3.7E-10 7.9E-15 89.8 21.7 242 2-261 274-521 (611)
55 KOG0547 Translocase of outer m 99.4 1.3E-10 2.9E-15 90.8 19.0 222 15-254 335-564 (606)
56 KOG1129 TPR repeat-containing 99.4 7.3E-11 1.6E-15 88.0 15.3 201 50-256 222-424 (478)
57 KOG2076 RNA polymerase III tra 99.4 2E-09 4.3E-14 90.0 24.7 61 194-255 417-477 (895)
58 KOG2076 RNA polymerase III tra 99.4 1.1E-09 2.5E-14 91.4 23.2 239 1-254 202-510 (895)
59 KOG2002 TPR-containing nuclear 99.4 1.5E-10 3.3E-15 97.2 18.2 173 46-219 559-744 (1018)
60 KOG0495 HAT repeat protein [RN 99.3 6.8E-10 1.5E-14 89.9 20.9 235 3-255 615-879 (913)
61 PF04733 Coatomer_E: Coatomer 99.3 3.2E-10 7E-15 86.5 17.4 223 10-255 39-264 (290)
62 KOG2002 TPR-containing nuclear 99.3 3.4E-10 7.5E-15 95.1 18.0 232 10-255 500-744 (1018)
63 KOG4318 Bicoid mRNA stability 99.3 4E-10 8.7E-15 93.9 16.8 228 4-262 23-271 (1088)
64 KOG1125 TPR repeat-containing 99.3 5.8E-09 1.3E-13 83.4 22.1 229 6-248 285-563 (579)
65 PF12569 NARP1: NMDA receptor- 99.3 2.3E-08 5E-13 81.9 26.2 227 12-258 10-293 (517)
66 KOG2003 TPR repeat-containing 99.3 2.4E-09 5.3E-14 83.5 19.2 185 64-255 503-688 (840)
67 KOG1070 rRNA processing protei 99.3 3.9E-09 8.4E-14 92.0 21.9 209 48-260 1455-1667(1710)
68 TIGR03302 OM_YfiO outer membra 99.2 9.1E-09 2E-13 77.0 20.7 188 48-256 30-232 (235)
69 COG5010 TadD Flp pilus assembl 99.2 2.1E-09 4.5E-14 77.9 16.0 164 50-218 66-229 (257)
70 TIGR03302 OM_YfiO outer membra 99.2 1.3E-08 2.7E-13 76.2 21.0 151 52-220 71-232 (235)
71 KOG0495 HAT repeat protein [RN 99.2 1.2E-08 2.7E-13 82.9 21.1 237 4-256 582-846 (913)
72 cd05804 StaR_like StaR_like; a 99.2 2E-08 4.4E-13 79.9 22.5 205 2-219 2-214 (355)
73 KOG0547 Translocase of outer m 99.2 3.5E-09 7.6E-14 83.1 17.1 195 9-219 363-565 (606)
74 COG3071 HemY Uncharacterized e 99.2 1.3E-08 2.7E-13 78.0 19.5 206 1-220 182-390 (400)
75 KOG1070 rRNA processing protei 99.2 2.8E-08 6.1E-13 86.9 23.8 237 2-250 1454-1694(1710)
76 KOG1128 Uncharacterized conser 99.2 2.8E-09 6.1E-14 87.3 16.8 221 3-255 395-615 (777)
77 PLN02789 farnesyltranstransfer 99.2 6.3E-08 1.4E-12 75.0 23.5 228 10-254 41-300 (320)
78 KOG1174 Anaphase-promoting com 99.2 1.6E-08 3.4E-13 78.0 19.4 235 4-255 230-499 (564)
79 COG5010 TadD Flp pilus assembl 99.1 3E-08 6.5E-13 72.0 19.0 162 86-252 66-227 (257)
80 cd05804 StaR_like StaR_like; a 99.1 1.3E-07 2.8E-12 75.3 24.5 204 50-255 5-214 (355)
81 PRK10370 formate-dependent nit 99.1 5.2E-08 1.1E-12 70.5 19.3 156 58-230 23-181 (198)
82 KOG1840 Kinesin light chain [C 99.1 7.9E-08 1.7E-12 78.2 22.2 206 50-255 198-437 (508)
83 PRK15179 Vi polysaccharide bio 99.1 1E-07 2.2E-12 81.1 22.2 148 83-234 82-229 (694)
84 PF04733 Coatomer_E: Coatomer 99.1 1.4E-08 3E-13 77.7 15.4 190 10-220 70-265 (290)
85 PRK10370 formate-dependent nit 99.1 2.9E-08 6.3E-13 71.8 16.2 157 13-195 23-182 (198)
86 PRK15179 Vi polysaccharide bio 99.1 2.7E-08 5.8E-13 84.5 18.0 149 46-198 81-229 (694)
87 KOG1174 Anaphase-promoting com 99.0 1.2E-07 2.7E-12 73.3 19.3 225 14-255 204-466 (564)
88 PF12854 PPR_1: PPR repeat 99.0 5.1E-10 1.1E-14 55.9 3.9 32 222-253 2-33 (34)
89 PRK15359 type III secretion sy 99.0 5.4E-08 1.2E-12 66.7 15.1 95 90-185 27-121 (144)
90 PF12854 PPR_1: PPR repeat 99.0 5.9E-10 1.3E-14 55.6 3.8 32 117-148 2-33 (34)
91 KOG1128 Uncharacterized conser 99.0 2.2E-08 4.8E-13 82.2 14.7 211 6-238 424-634 (777)
92 KOG4318 Bicoid mRNA stability 99.0 2.6E-08 5.6E-13 83.5 15.0 197 45-261 19-238 (1088)
93 KOG1915 Cell cycle control pro 99.0 9.9E-07 2.1E-11 69.6 22.6 230 14-260 81-354 (677)
94 COG4783 Putative Zn-dependent 99.0 5.2E-07 1.1E-11 71.3 21.0 153 55-230 310-462 (484)
95 PF12569 NARP1: NMDA receptor- 99.0 2.1E-06 4.5E-11 70.7 25.4 196 56-257 9-258 (517)
96 PRK15359 type III secretion sy 98.9 1E-07 2.3E-12 65.3 14.4 94 125-219 27-120 (144)
97 TIGR02552 LcrH_SycD type III s 98.9 1.4E-07 3E-12 64.2 14.8 97 88-185 18-114 (135)
98 KOG1915 Cell cycle control pro 98.9 2.7E-06 5.8E-11 67.3 22.6 235 2-254 318-583 (677)
99 PLN02789 farnesyltranstransfer 98.9 2.8E-06 6.1E-11 66.0 22.6 198 53-256 39-250 (320)
100 PRK14720 transcript cleavage f 98.9 3.2E-07 7E-12 79.1 19.0 204 2-238 27-268 (906)
101 COG4783 Putative Zn-dependent 98.9 5.8E-06 1.3E-10 65.6 23.8 168 46-219 269-436 (484)
102 TIGR02552 LcrH_SycD type III s 98.9 2.9E-07 6.3E-12 62.5 14.8 118 109-231 5-122 (135)
103 KOG1125 TPR repeat-containing 98.9 6.4E-07 1.4E-11 72.0 18.2 191 57-254 291-525 (579)
104 KOG4162 Predicted calmodulin-b 98.9 3.7E-06 8.1E-11 70.0 22.4 241 2-255 474-782 (799)
105 KOG1156 N-terminal acetyltrans 98.8 3.5E-06 7.6E-11 68.9 21.4 233 3-253 38-280 (700)
106 KOG3081 Vesicle coat complex C 98.8 7.4E-06 1.6E-10 60.1 20.5 145 89-244 110-258 (299)
107 KOG3060 Uncharacterized conser 98.8 1.1E-05 2.3E-10 58.8 20.9 192 19-220 25-220 (289)
108 TIGR00756 PPR pentatricopeptid 98.8 2.3E-08 4.9E-13 50.5 4.5 34 229-262 2-35 (35)
109 KOG3081 Vesicle coat complex C 98.7 6.2E-06 1.3E-10 60.5 17.7 160 50-220 107-271 (299)
110 KOG1156 N-terminal acetyltrans 98.7 4E-06 8.7E-11 68.5 18.3 237 4-256 5-248 (700)
111 PF09976 TPR_21: Tetratricopep 98.7 2.8E-06 6.2E-11 58.4 15.4 115 135-252 24-143 (145)
112 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.2E-06 2.7E-11 69.4 15.2 127 51-183 169-295 (395)
113 KOG2047 mRNA splicing factor [ 98.7 2.8E-05 6E-10 63.9 22.2 203 8-219 389-614 (835)
114 KOG4340 Uncharacterized conser 98.7 3.1E-06 6.7E-11 63.1 15.5 198 54-260 13-211 (459)
115 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.2E-06 4.7E-11 68.1 15.8 124 88-217 170-294 (395)
116 KOG4340 Uncharacterized conser 98.7 4.3E-06 9.3E-11 62.4 16.1 224 9-254 13-268 (459)
117 KOG2047 mRNA splicing factor [ 98.7 3E-05 6.5E-10 63.7 22.1 28 8-35 250-277 (835)
118 PF13812 PPR_3: Pentatricopept 98.7 6E-08 1.3E-12 48.6 4.5 33 228-260 2-34 (34)
119 KOG0624 dsRNA-activated protei 98.7 8.1E-05 1.7E-09 56.9 22.4 230 9-256 41-298 (504)
120 KOG3060 Uncharacterized conser 98.6 6.8E-05 1.5E-09 54.8 21.6 186 65-255 26-219 (289)
121 PF09976 TPR_21: Tetratricopep 98.6 7.1E-06 1.5E-10 56.4 15.3 114 64-180 24-142 (145)
122 KOG0624 dsRNA-activated protei 98.6 2E-05 4.2E-10 60.1 17.9 186 64-255 168-369 (504)
123 KOG2376 Signal recognition par 98.6 1.4E-05 2.9E-10 64.9 18.0 219 12-257 18-254 (652)
124 PRK14720 transcript cleavage f 98.6 1.9E-05 4.1E-10 68.6 20.2 201 49-256 29-252 (906)
125 KOG4162 Predicted calmodulin-b 98.6 1.7E-05 3.6E-10 66.3 19.0 236 5-253 322-573 (799)
126 cd00189 TPR Tetratricopeptide 98.6 2.2E-06 4.7E-11 53.8 11.1 17 61-77 10-26 (100)
127 KOG1914 mRNA cleavage and poly 98.6 7.4E-05 1.6E-09 60.3 21.2 103 156-261 366-469 (656)
128 KOG2053 Mitochondrial inherita 98.6 0.00012 2.6E-09 62.4 23.4 227 16-257 19-256 (932)
129 TIGR00756 PPR pentatricopeptid 98.6 1.2E-07 2.6E-12 47.8 4.0 33 158-190 2-34 (35)
130 PRK04841 transcriptional regul 98.6 6.6E-05 1.4E-09 67.4 23.8 242 10-256 495-760 (903)
131 PF05843 Suf: Suppressor of fo 98.6 8.8E-06 1.9E-10 62.4 15.7 131 52-185 2-136 (280)
132 PF10037 MRP-S27: Mitochondria 98.5 3.1E-06 6.7E-11 67.6 13.2 121 119-240 63-186 (429)
133 cd00189 TPR Tetratricopeptide 98.5 4E-06 8.8E-11 52.5 11.3 96 89-185 2-97 (100)
134 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.1E-05 2.3E-10 53.3 13.6 104 53-156 4-110 (119)
135 PF13812 PPR_3: Pentatricopept 98.5 2.4E-07 5.1E-12 46.4 4.2 32 158-189 3-34 (34)
136 PRK15363 pathogenicity island 98.5 2E-05 4.2E-10 53.8 14.1 94 91-185 39-132 (157)
137 KOG3785 Uncharacterized conser 98.5 6.6E-06 1.4E-10 62.9 12.6 205 6-230 285-497 (557)
138 TIGR02795 tol_pal_ybgF tol-pal 98.5 2E-05 4.4E-10 52.0 13.9 94 91-185 6-105 (119)
139 KOG1127 TPR repeat-containing 98.5 7E-06 1.5E-10 70.4 13.7 167 6-184 492-658 (1238)
140 PLN03088 SGT1, suppressor of 98.5 1.5E-05 3.2E-10 63.4 14.8 93 58-153 9-101 (356)
141 PF05843 Suf: Suppressor of fo 98.5 8.2E-06 1.8E-10 62.5 13.0 143 88-235 2-148 (280)
142 PF10037 MRP-S27: Mitochondria 98.5 5.2E-06 1.1E-10 66.3 12.1 122 83-204 62-186 (429)
143 PRK15363 pathogenicity island 98.4 3.3E-05 7.1E-10 52.7 14.0 89 131-220 44-132 (157)
144 PRK02603 photosystem I assembl 98.4 5.4E-05 1.2E-09 53.7 16.0 92 87-178 35-128 (172)
145 PRK02603 photosystem I assembl 98.4 3.2E-05 7E-10 54.8 14.7 97 47-144 31-128 (172)
146 PRK04841 transcriptional regul 98.4 0.00048 1E-08 62.0 25.4 231 15-255 383-640 (903)
147 PLN03088 SGT1, suppressor of 98.4 2.3E-05 5E-10 62.2 15.2 105 93-200 8-112 (356)
148 CHL00033 ycf3 photosystem I as 98.4 1.5E-05 3.3E-10 56.3 12.9 82 86-167 34-117 (168)
149 PF12895 Apc3: Anaphase-promot 98.4 1.5E-06 3.2E-11 53.7 6.7 82 64-147 2-83 (84)
150 PF01535 PPR: PPR repeat; Int 98.4 4.5E-07 9.7E-12 44.3 3.0 30 229-258 2-31 (31)
151 PRK10866 outer membrane biogen 98.4 0.00048 1E-08 51.6 20.5 185 50-254 31-239 (243)
152 KOG0985 Vesicle coat protein c 98.4 0.0001 2.2E-09 63.8 18.0 209 5-251 1103-1336(1666)
153 PF12895 Apc3: Anaphase-promot 98.4 1.9E-06 4.2E-11 53.2 6.2 79 101-180 3-82 (84)
154 KOG3785 Uncharacterized conser 98.3 6.6E-05 1.4E-09 57.6 15.1 199 54-260 288-494 (557)
155 KOG2376 Signal recognition par 98.3 0.0004 8.6E-09 56.8 19.6 187 52-254 13-202 (652)
156 KOG1914 mRNA cleavage and poly 98.3 0.0004 8.7E-09 56.3 19.1 152 67-220 347-501 (656)
157 PF08579 RPM2: Mitochondrial r 98.3 3E-05 6.5E-10 49.3 10.4 79 160-239 29-116 (120)
158 KOG0548 Molecular co-chaperone 98.3 0.00032 6.8E-09 56.6 18.2 195 10-219 228-454 (539)
159 PF01535 PPR: PPR repeat; Int 98.2 1.6E-06 3.5E-11 42.2 3.4 28 158-185 2-29 (31)
160 PF12688 TPR_5: Tetratrico pep 98.2 0.00019 4E-09 47.2 13.9 87 95-181 9-100 (120)
161 KOG1127 TPR repeat-containing 98.2 0.00034 7.4E-09 60.6 18.5 218 21-255 473-699 (1238)
162 COG4700 Uncharacterized protei 98.2 0.0007 1.5E-08 47.4 18.3 133 83-217 85-219 (251)
163 CHL00033 ycf3 photosystem I as 98.2 0.00014 3.1E-09 51.3 13.7 95 50-145 34-136 (168)
164 KOG3617 WD40 and TPR repeat-co 98.2 0.00011 2.3E-09 62.5 14.5 216 6-252 757-992 (1416)
165 KOG3616 Selective LIM binding 98.2 8.4E-05 1.8E-09 62.4 13.8 77 58-146 739-815 (1636)
166 PRK10153 DNA-binding transcrip 98.2 0.00036 7.7E-09 58.1 17.6 141 83-229 333-488 (517)
167 PF14938 SNAP: Soluble NSF att 98.2 0.00076 1.6E-08 52.0 18.3 200 51-252 35-262 (282)
168 PF08579 RPM2: Mitochondrial r 98.2 0.00012 2.6E-09 46.6 10.9 80 54-134 28-116 (120)
169 PRK10153 DNA-binding transcrip 98.1 0.00047 1E-08 57.4 17.5 137 117-256 332-482 (517)
170 KOG0985 Vesicle coat protein c 98.1 0.00061 1.3E-08 59.3 18.1 164 11-214 1053-1217(1666)
171 KOG0553 TPR repeat-containing 98.1 7E-05 1.5E-09 56.1 11.2 101 96-199 90-190 (304)
172 KOG0553 TPR repeat-containing 98.1 0.00013 2.8E-09 54.7 12.4 131 57-190 87-220 (304)
173 KOG3617 WD40 and TPR repeat-co 98.1 0.0012 2.6E-08 56.4 18.6 30 154-183 965-994 (1416)
174 KOG2796 Uncharacterized conser 98.1 0.0016 3.4E-08 48.3 16.8 131 54-185 180-315 (366)
175 PF13414 TPR_11: TPR repeat; P 98.1 3.8E-05 8.2E-10 45.3 7.4 59 53-113 5-64 (69)
176 PF13432 TPR_16: Tetratricopep 98.1 3.7E-05 8.1E-10 44.8 7.2 53 60-114 6-58 (65)
177 KOG3616 Selective LIM binding 98.1 0.00027 5.7E-09 59.6 14.3 78 94-181 739-816 (1636)
178 PRK10866 outer membrane biogen 98.1 0.0024 5.2E-08 47.9 20.7 66 87-153 32-100 (243)
179 PF14559 TPR_19: Tetratricopep 98.1 2.7E-05 5.9E-10 45.8 6.5 50 135-184 4-53 (68)
180 PF12688 TPR_5: Tetratrico pep 98.0 0.0011 2.3E-08 43.7 14.2 108 54-167 4-117 (120)
181 PF14559 TPR_19: Tetratricopep 98.0 3.4E-05 7.3E-10 45.4 6.5 53 62-116 2-54 (68)
182 PF14938 SNAP: Soluble NSF att 98.0 0.0012 2.6E-08 50.9 16.3 167 89-256 37-225 (282)
183 COG4235 Cytochrome c biogenesi 98.0 0.00093 2E-08 50.4 15.0 100 119-219 153-255 (287)
184 PF06239 ECSIT: Evolutionarily 98.0 0.00016 3.5E-09 51.9 10.5 49 119-167 44-98 (228)
185 PF13432 TPR_16: Tetratricopep 98.0 5.5E-05 1.2E-09 44.0 6.8 47 135-181 10-56 (65)
186 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.0057 1.2E-07 48.9 20.1 68 2-80 38-105 (660)
187 KOG2053 Mitochondrial inherita 98.0 0.0095 2.1E-07 51.4 23.4 191 15-220 52-255 (932)
188 PF13414 TPR_11: TPR repeat; P 97.9 7.1E-05 1.5E-09 44.1 7.0 59 89-148 5-64 (69)
189 PRK10803 tol-pal system protei 97.9 0.00085 1.8E-08 50.8 13.2 97 124-220 145-246 (263)
190 PRK10803 tol-pal system protei 97.8 0.0012 2.6E-08 50.0 13.5 100 157-256 144-246 (263)
191 PF13525 YfiO: Outer membrane 97.8 0.0056 1.2E-07 44.7 20.6 179 50-247 4-198 (203)
192 COG4235 Cytochrome c biogenesi 97.8 0.0031 6.7E-08 47.6 15.1 102 84-186 153-257 (287)
193 PF06239 ECSIT: Evolutionarily 97.8 0.00075 1.6E-08 48.5 10.8 34 138-171 119-153 (228)
194 PF12921 ATP13: Mitochondrial 97.8 0.00087 1.9E-08 44.5 10.6 54 186-239 47-100 (126)
195 PF13525 YfiO: Outer membrane 97.8 0.002 4.3E-08 47.0 13.3 177 9-211 8-198 (203)
196 KOG0548 Molecular co-chaperone 97.8 0.014 3E-07 47.6 18.6 180 9-203 260-471 (539)
197 PF13281 DUF4071: Domain of un 97.8 0.013 2.8E-07 46.4 19.8 186 69-256 121-334 (374)
198 COG4700 Uncharacterized protei 97.7 0.0069 1.5E-07 42.6 18.8 148 96-248 65-214 (251)
199 PF03704 BTAD: Bacterial trans 97.7 0.00036 7.9E-09 48.0 8.6 57 126-182 66-122 (146)
200 PF13371 TPR_9: Tetratricopept 97.7 0.00043 9.3E-09 41.2 7.7 54 131-184 4-57 (73)
201 PF13371 TPR_9: Tetratricopept 97.7 0.00053 1.1E-08 40.8 7.9 57 96-153 4-60 (73)
202 PF09205 DUF1955: Domain of un 97.7 0.0057 1.2E-07 40.3 14.3 140 98-259 13-152 (161)
203 PF04053 Coatomer_WDAD: Coatom 97.7 0.0041 8.9E-08 50.8 14.8 134 51-217 295-428 (443)
204 PF04840 Vps16_C: Vps16, C-ter 97.6 0.02 4.3E-07 44.8 18.7 107 124-250 179-285 (319)
205 KOG2796 Uncharacterized conser 97.6 0.006 1.3E-07 45.3 13.2 133 10-153 181-317 (366)
206 PF03704 BTAD: Bacterial trans 97.6 0.0019 4.1E-08 44.4 10.4 58 90-148 65-122 (146)
207 PF08631 SPO22: Meiosis protei 97.6 0.021 4.6E-07 43.9 24.9 229 16-254 3-273 (278)
208 PRK15331 chaperone protein Sic 97.5 0.0091 2E-07 41.2 12.9 90 94-184 44-133 (165)
209 KOG0543 FKBP-type peptidyl-pro 97.5 0.0057 1.2E-07 48.1 13.3 96 123-220 258-355 (397)
210 KOG2041 WD40 repeat protein [G 97.5 0.0046 1E-07 52.1 12.9 30 3-32 689-718 (1189)
211 PF10300 DUF3808: Protein of u 97.5 0.024 5.2E-07 47.0 16.9 161 93-255 194-375 (468)
212 PF12921 ATP13: Mitochondrial 97.4 0.0039 8.4E-08 41.5 10.0 81 50-130 1-96 (126)
213 PF13424 TPR_12: Tetratricopep 97.4 0.0014 3E-08 39.6 7.4 64 192-255 6-74 (78)
214 KOG1538 Uncharacterized conser 97.4 0.016 3.4E-07 48.6 15.2 192 46-257 630-847 (1081)
215 PF13424 TPR_12: Tetratricopep 97.4 0.0013 2.8E-08 39.8 7.1 25 89-113 7-31 (78)
216 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.017 3.6E-07 46.6 14.9 68 46-116 70-141 (453)
217 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.012 2.5E-07 47.5 13.9 103 2-118 71-176 (453)
218 PF10300 DUF3808: Protein of u 97.4 0.037 8.1E-07 45.9 17.5 161 56-219 193-375 (468)
219 PF04840 Vps16_C: Vps16, C-ter 97.4 0.021 4.5E-07 44.7 14.7 110 89-217 179-288 (319)
220 COG3898 Uncharacterized membra 97.3 0.054 1.2E-06 42.8 24.2 223 18-256 132-392 (531)
221 COG1729 Uncharacterized protei 97.3 0.0078 1.7E-07 45.0 11.0 98 53-153 144-246 (262)
222 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.04 8.7E-07 44.3 15.2 145 88-237 398-545 (660)
223 KOG0550 Molecular chaperone (D 97.3 0.035 7.6E-07 44.1 14.5 156 95-256 177-350 (486)
224 COG1729 Uncharacterized protei 97.2 0.0094 2E-07 44.5 11.0 88 168-255 153-243 (262)
225 KOG2610 Uncharacterized conser 97.2 0.023 4.9E-07 43.9 12.8 153 63-217 115-273 (491)
226 KOG0543 FKBP-type peptidyl-pro 97.2 0.02 4.4E-07 45.2 12.8 62 157-219 258-319 (397)
227 PRK15331 chaperone protein Sic 97.2 0.038 8.3E-07 38.2 15.0 90 129-219 44-133 (165)
228 PF13512 TPR_18: Tetratricopep 97.1 0.038 8.2E-07 37.3 12.3 57 97-153 20-78 (142)
229 KOG2280 Vacuolar assembly/sort 97.1 0.13 2.7E-06 44.1 17.0 222 5-251 506-794 (829)
230 COG4105 ComL DNA uptake lipopr 97.1 0.072 1.6E-06 39.7 20.5 168 50-218 33-231 (254)
231 PRK11906 transcriptional regul 97.1 0.11 2.3E-06 42.3 15.9 164 52-217 252-433 (458)
232 COG3898 Uncharacterized membra 97.1 0.11 2.3E-06 41.2 20.1 202 18-242 96-309 (531)
233 KOG2041 WD40 repeat protein [G 97.1 0.041 8.8E-07 46.7 13.9 184 48-252 689-903 (1189)
234 smart00299 CLH Clathrin heavy 97.0 0.048 1E-06 37.1 13.0 128 90-239 10-137 (140)
235 KOG1130 Predicted G-alpha GTPa 97.0 0.011 2.4E-07 46.8 10.0 133 124-256 197-344 (639)
236 KOG2610 Uncharacterized conser 97.0 0.1 2.2E-06 40.5 15.3 155 15-183 112-274 (491)
237 COG3118 Thioredoxin domain-con 97.0 0.11 2.3E-06 39.6 14.2 153 96-251 143-296 (304)
238 KOG4555 TPR repeat-containing 96.9 0.054 1.2E-06 35.9 10.7 89 97-186 53-145 (175)
239 KOG2114 Vacuolar assembly/sort 96.9 0.07 1.5E-06 46.2 14.1 181 8-217 336-516 (933)
240 PF04053 Coatomer_WDAD: Coatom 96.9 0.045 9.9E-07 44.9 12.8 130 9-181 298-427 (443)
241 KOG3941 Intermediate in Toll s 96.9 0.031 6.8E-07 42.1 10.7 102 46-148 62-185 (406)
242 PF13281 DUF4071: Domain of un 96.8 0.17 3.7E-06 40.3 19.8 170 50-220 140-334 (374)
243 PF13428 TPR_14: Tetratricopep 96.8 0.0076 1.7E-07 31.7 5.3 29 128-156 7-35 (44)
244 COG4785 NlpI Lipoprotein NlpI, 96.7 0.13 2.8E-06 37.4 17.1 160 87-257 99-267 (297)
245 PF13170 DUF4003: Protein of u 96.7 0.19 4.1E-06 39.0 19.0 129 103-234 78-224 (297)
246 COG3629 DnrI DNA-binding trans 96.7 0.036 7.9E-07 42.1 10.4 78 123-200 154-236 (280)
247 PRK11906 transcriptional regul 96.6 0.28 6.2E-06 39.9 16.0 145 102-251 273-431 (458)
248 COG3118 Thioredoxin domain-con 96.6 0.2 4.4E-06 38.2 18.8 120 62-184 145-264 (304)
249 PF07079 DUF1347: Protein of u 96.6 0.25 5.3E-06 40.1 14.4 138 60-203 15-179 (549)
250 KOG3941 Intermediate in Toll s 96.6 0.03 6.6E-07 42.2 8.9 33 209-242 141-173 (406)
251 PF13428 TPR_14: Tetratricopep 96.6 0.0092 2E-07 31.4 4.7 27 90-116 4-30 (44)
252 COG0457 NrfG FOG: TPR repeat [ 96.5 0.19 4.1E-06 36.7 24.6 202 50-255 58-264 (291)
253 KOG0550 Molecular chaperone (D 96.5 0.3 6.5E-06 39.1 15.2 165 49-220 166-350 (486)
254 KOG1941 Acetylcholine receptor 96.5 0.12 2.6E-06 40.6 12.0 237 9-253 9-272 (518)
255 KOG4555 TPR repeat-containing 96.4 0.14 3E-06 34.0 11.4 91 60-152 52-145 (175)
256 smart00299 CLH Clathrin heavy 96.4 0.17 3.7E-06 34.4 15.5 127 54-203 10-137 (140)
257 PF04184 ST7: ST7 protein; In 96.3 0.46 1E-05 39.1 20.7 140 56-200 173-340 (539)
258 COG1747 Uncharacterized N-term 96.3 0.48 1E-05 39.1 18.3 166 84-255 63-233 (711)
259 PF08631 SPO22: Meiosis protei 96.3 0.36 7.8E-06 37.2 23.7 164 61-227 3-192 (278)
260 KOG0276 Vesicle coat complex C 96.3 0.15 3.3E-06 42.7 11.8 152 16-217 596-747 (794)
261 KOG1550 Extracellular protein 96.2 0.65 1.4E-05 39.7 18.2 183 67-258 228-428 (552)
262 PF10602 RPN7: 26S proteasome 96.2 0.15 3.2E-06 36.3 10.6 61 89-149 38-100 (177)
263 PF13512 TPR_18: Tetratricopep 96.2 0.22 4.8E-06 33.7 13.1 86 50-135 9-95 (142)
264 COG3629 DnrI DNA-binding trans 96.1 0.078 1.7E-06 40.4 9.1 79 157-236 154-236 (280)
265 PF09205 DUF1955: Domain of un 95.9 0.27 5.9E-06 32.7 13.9 134 62-220 13-149 (161)
266 KOG2114 Vacuolar assembly/sort 95.9 0.58 1.3E-05 40.9 14.2 180 52-253 335-516 (933)
267 PF10602 RPN7: 26S proteasome 95.9 0.2 4.3E-06 35.7 10.0 60 158-217 38-99 (177)
268 PF13431 TPR_17: Tetratricopep 95.9 0.0041 8.8E-08 30.7 1.0 27 1-27 8-34 (34)
269 COG4649 Uncharacterized protei 95.8 0.4 8.8E-06 33.6 13.1 137 87-225 59-200 (221)
270 COG0457 NrfG FOG: TPR repeat [ 95.7 0.52 1.1E-05 34.3 24.0 191 64-256 36-231 (291)
271 PF04184 ST7: ST7 protein; In 95.7 0.83 1.8E-05 37.7 13.5 138 98-241 179-345 (539)
272 COG4785 NlpI Lipoprotein NlpI, 95.6 0.58 1.2E-05 34.2 11.0 161 50-220 98-266 (297)
273 PF13170 DUF4003: Protein of u 95.6 0.83 1.8E-05 35.5 14.6 154 67-224 78-254 (297)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 95.6 0.18 3.8E-06 31.4 7.3 61 173-235 24-84 (103)
275 KOG1941 Acetylcholine receptor 95.6 0.36 7.7E-06 38.1 10.6 168 9-183 86-273 (518)
276 PF02284 COX5A: Cytochrome c o 95.5 0.23 5E-06 31.3 7.9 60 174-235 28-87 (108)
277 PF13929 mRNA_stabil: mRNA sta 95.5 0.81 1.8E-05 35.0 13.2 146 90-238 134-289 (292)
278 KOG1920 IkappaB kinase complex 95.4 1.7 3.8E-05 39.7 15.5 147 60-218 860-1026(1265)
279 COG4105 ComL DNA uptake lipopr 95.4 0.81 1.8E-05 34.3 22.0 170 85-255 33-232 (254)
280 KOG1538 Uncharacterized conser 95.4 1.5 3.3E-05 37.5 14.3 176 10-219 636-845 (1081)
281 PF13176 TPR_7: Tetratricopept 95.3 0.059 1.3E-06 26.8 4.1 26 229-254 1-26 (36)
282 KOG4570 Uncharacterized conser 95.3 0.45 9.8E-06 36.7 10.2 99 119-219 61-163 (418)
283 PF13176 TPR_7: Tetratricopept 95.2 0.061 1.3E-06 26.8 4.1 23 90-112 2-24 (36)
284 KOG1258 mRNA processing protei 95.2 1.6 3.6E-05 36.7 21.1 188 48-241 294-489 (577)
285 KOG1258 mRNA processing protei 95.1 1.7 3.7E-05 36.6 14.5 186 4-205 295-489 (577)
286 PF00515 TPR_1: Tetratricopept 95.0 0.092 2E-06 25.5 4.3 27 229-255 3-29 (34)
287 PF13431 TPR_17: Tetratricopep 95.0 0.034 7.4E-07 27.4 2.6 20 122-141 13-32 (34)
288 COG4649 Uncharacterized protei 94.9 0.88 1.9E-05 32.0 15.4 24 161-184 172-195 (221)
289 PF07079 DUF1347: Protein of u 94.8 1.9 4E-05 35.3 19.4 144 15-167 15-178 (549)
290 PF11207 DUF2989: Protein of u 94.8 0.48 1E-05 34.2 8.7 78 168-247 119-198 (203)
291 KOG1920 IkappaB kinase complex 94.7 0.77 1.7E-05 41.8 11.5 183 13-217 858-1052(1265)
292 KOG2280 Vacuolar assembly/sort 94.6 0.6 1.3E-05 40.3 10.2 126 73-216 670-795 (829)
293 PF07719 TPR_2: Tetratricopept 94.5 0.15 3.2E-06 24.7 4.3 26 230-255 4-29 (34)
294 KOG4570 Uncharacterized conser 94.4 0.48 1E-05 36.6 8.5 108 46-155 59-168 (418)
295 KOG0276 Vesicle coat complex C 94.4 2.5 5.5E-05 35.9 13.0 133 7-182 615-747 (794)
296 PF09613 HrpB1_HrpK: Bacterial 94.2 1.2 2.7E-05 30.8 13.5 55 96-152 19-74 (160)
297 PF02259 FAT: FAT domain; Int 94.1 2.4 5.2E-05 33.8 16.3 192 57-255 4-212 (352)
298 KOG1585 Protein required for f 94.0 1.9 4.1E-05 32.3 16.1 114 134-248 122-248 (308)
299 PRK15180 Vi polysaccharide bio 93.9 0.9 1.9E-05 37.4 9.5 52 61-114 333-384 (831)
300 PF02284 COX5A: Cytochrome c o 93.9 0.94 2E-05 28.7 7.6 46 69-115 28-73 (108)
301 COG4455 ImpE Protein of avirul 93.8 0.83 1.8E-05 33.4 8.3 75 90-165 4-81 (273)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.97 2.1E-05 28.3 7.5 45 69-114 25-69 (103)
303 KOG1464 COP9 signalosome, subu 93.8 2.3 4.9E-05 32.4 16.4 202 47-248 22-252 (440)
304 KOG4648 Uncharacterized conser 93.5 0.45 9.7E-06 37.2 7.0 93 130-226 105-197 (536)
305 COG4455 ImpE Protein of avirul 93.5 1 2.2E-05 33.0 8.3 77 53-131 3-81 (273)
306 KOG4234 TPR repeat-containing 93.5 2.1 4.6E-05 31.0 11.1 92 94-186 102-198 (271)
307 KOG4234 TPR repeat-containing 93.3 2 4.3E-05 31.1 9.4 105 103-220 88-197 (271)
308 PF00515 TPR_1: Tetratricopept 93.3 0.33 7.2E-06 23.5 4.3 23 160-182 5-27 (34)
309 COG2976 Uncharacterized protei 93.2 0.75 1.6E-05 33.0 7.2 93 55-152 93-189 (207)
310 PF08424 NRDE-2: NRDE-2, neces 93.2 3.5 7.5E-05 32.6 17.2 100 84-184 16-130 (321)
311 PF07721 TPR_4: Tetratricopept 93.2 0.14 3.1E-06 23.3 2.6 25 7-31 2-26 (26)
312 PF13374 TPR_10: Tetratricopep 93.2 0.34 7.5E-06 24.6 4.5 28 228-255 3-30 (42)
313 PF13374 TPR_10: Tetratricopep 93.1 0.33 7.3E-06 24.6 4.4 26 89-114 4-29 (42)
314 COG3947 Response regulator con 93.1 3.2 6.9E-05 32.0 13.8 73 158-231 281-357 (361)
315 PF11207 DUF2989: Protein of u 92.8 2.3 5E-05 30.8 9.3 77 133-211 118-198 (203)
316 PF13181 TPR_8: Tetratricopept 92.8 0.28 6.1E-06 23.7 3.6 26 230-255 4-29 (34)
317 PF06552 TOM20_plant: Plant sp 92.8 2.3 4.9E-05 30.2 9.0 29 67-97 7-35 (186)
318 PF00637 Clathrin: Region in C 92.6 0.051 1.1E-06 37.1 0.9 128 93-242 13-140 (143)
319 PF02259 FAT: FAT domain; Int 92.4 4.6 0.0001 32.1 19.9 192 12-219 4-212 (352)
320 PF07719 TPR_2: Tetratricopept 92.4 0.61 1.3E-05 22.4 4.5 24 91-114 5-28 (34)
321 COG2976 Uncharacterized protei 92.3 3.1 6.8E-05 29.9 13.4 89 163-257 96-189 (207)
322 PF00637 Clathrin: Region in C 92.2 0.044 9.5E-07 37.4 0.2 129 56-206 12-140 (143)
323 PF07163 Pex26: Pex26 protein; 92.2 3.5 7.6E-05 31.5 9.9 131 14-145 43-181 (309)
324 PRK15180 Vi polysaccharide bio 92.0 6.4 0.00014 32.7 15.4 128 56-186 294-421 (831)
325 TIGR02561 HrpB1_HrpK type III 91.7 3.1 6.6E-05 28.5 11.9 52 99-152 22-74 (153)
326 TIGR03504 FimV_Cterm FimV C-te 91.7 0.44 9.5E-06 25.0 3.5 25 233-257 5-29 (44)
327 KOG4077 Cytochrome c oxidase, 91.4 2.4 5.2E-05 28.1 7.3 59 174-234 67-125 (149)
328 PF13174 TPR_6: Tetratricopept 91.3 0.5 1.1E-05 22.4 3.5 24 197-220 6-29 (33)
329 PF13174 TPR_6: Tetratricopept 91.3 0.88 1.9E-05 21.5 4.4 24 232-255 5-28 (33)
330 KOG4648 Uncharacterized conser 91.3 2.4 5.1E-05 33.5 8.4 47 96-143 106-152 (536)
331 PF07163 Pex26: Pex26 protein; 91.3 5.4 0.00012 30.5 10.0 123 57-179 41-181 (309)
332 PF07035 Mic1: Colon cancer-as 91.1 4 8.6E-05 28.7 13.9 22 82-103 24-45 (167)
333 PF13181 TPR_8: Tetratricopept 91.1 0.92 2E-05 21.8 4.3 27 89-115 3-29 (34)
334 PF13934 ELYS: Nuclear pore co 91.0 5.2 0.00011 29.8 10.6 54 93-149 114-167 (226)
335 KOG0991 Replication factor C, 90.9 5.4 0.00012 29.8 12.0 58 167-226 203-272 (333)
336 KOG1130 Predicted G-alpha GTPa 90.6 0.98 2.1E-05 36.4 5.9 128 56-183 200-342 (639)
337 COG1747 Uncharacterized N-term 90.5 9.5 0.00021 32.0 20.7 179 49-237 64-249 (711)
338 PF07035 Mic1: Colon cancer-as 90.3 4.8 0.0001 28.3 15.8 135 107-256 14-149 (167)
339 PF09613 HrpB1_HrpK: Bacterial 90.3 4.7 0.0001 28.1 14.0 52 62-115 21-72 (160)
340 KOG1586 Protein required for f 90.2 6.2 0.00013 29.5 13.8 22 199-220 162-183 (288)
341 PF04097 Nic96: Nup93/Nic96; 90.2 9.6 0.00021 33.3 12.1 21 11-31 263-283 (613)
342 TIGR03504 FimV_Cterm FimV C-te 89.8 1.1 2.3E-05 23.6 3.9 23 93-115 5-27 (44)
343 KOG0686 COP9 signalosome, subu 89.7 9.7 0.00021 30.9 14.1 177 9-198 153-351 (466)
344 PF11846 DUF3366: Domain of un 89.7 3.4 7.3E-05 29.9 7.9 52 168-219 120-172 (193)
345 TIGR02561 HrpB1_HrpK type III 89.5 5.1 0.00011 27.5 11.3 52 133-186 21-74 (153)
346 KOG1586 Protein required for f 89.3 7.6 0.00016 29.0 13.7 25 233-257 160-184 (288)
347 PF13877 RPAP3_C: Potential Mo 89.1 3.9 8.4E-05 25.6 7.6 89 3-112 1-90 (94)
348 PRK10941 hypothetical protein; 89.0 8.9 0.00019 29.5 10.6 78 125-202 184-262 (269)
349 PRK09687 putative lyase; Provi 88.7 9.5 0.00021 29.5 21.8 218 4-255 35-262 (280)
350 PRK09687 putative lyase; Provi 88.6 9.7 0.00021 29.5 24.4 17 226-242 205-221 (280)
351 PF06552 TOM20_plant: Plant sp 88.4 7.2 0.00016 27.8 12.2 42 207-257 96-137 (186)
352 KOG4507 Uncharacterized conser 88.0 10 0.00022 32.5 10.1 114 84-198 604-717 (886)
353 PF10579 Rapsyn_N: Rapsyn N-te 87.8 2.5 5.5E-05 25.3 5.0 47 203-249 18-65 (80)
354 KOG0890 Protein kinase of the 87.8 33 0.00072 34.7 14.6 152 56-214 1388-1541(2382)
355 PF14689 SPOB_a: Sensor_kinase 87.5 3.1 6.7E-05 23.7 5.2 45 173-219 7-51 (62)
356 PF11817 Foie-gras_1: Foie gra 87.5 5 0.00011 30.4 7.8 62 193-254 180-245 (247)
357 PF13762 MNE1: Mitochondrial s 87.2 7.6 0.00016 26.6 10.4 79 125-203 42-127 (145)
358 KOG1585 Protein required for f 87.1 11 0.00024 28.4 14.1 177 51-253 31-216 (308)
359 PF11846 DUF3366: Domain of un 86.9 4.8 0.0001 29.1 7.2 32 84-115 141-172 (193)
360 PF10579 Rapsyn_N: Rapsyn N-te 86.7 3.4 7.3E-05 24.8 5.0 46 99-144 18-65 (80)
361 KOG0890 Protein kinase of the 86.6 39 0.00085 34.2 15.0 154 11-180 1388-1542(2382)
362 COG2909 MalT ATP-dependent tra 86.5 24 0.00053 31.8 22.2 26 232-257 623-648 (894)
363 COG2909 MalT ATP-dependent tra 86.4 25 0.00053 31.8 15.0 195 16-216 468-684 (894)
364 PF08424 NRDE-2: NRDE-2, neces 86.1 15 0.00033 29.1 20.2 103 44-149 12-129 (321)
365 PRK10941 hypothetical protein; 85.9 14 0.0003 28.4 10.7 82 158-240 183-264 (269)
366 KOG2471 TPR repeat-containing 85.7 14 0.0003 30.9 9.6 108 130-240 248-382 (696)
367 COG3947 Response regulator con 85.7 15 0.00032 28.6 11.2 61 193-255 281-341 (361)
368 KOG1464 COP9 signalosome, subu 85.4 15 0.00032 28.2 17.0 184 18-211 39-251 (440)
369 KOG0376 Serine-threonine phosp 85.2 3.6 7.8E-05 33.9 6.2 89 58-150 11-100 (476)
370 PF14689 SPOB_a: Sensor_kinase 84.3 4.9 0.00011 22.9 4.9 18 129-146 30-47 (62)
371 KOG2396 HAT (Half-A-TPR) repea 83.8 25 0.00054 29.6 15.9 195 50-255 357-558 (568)
372 cd00280 TRFH Telomeric Repeat 83.5 14 0.0003 26.5 7.8 65 67-134 85-155 (200)
373 KOG2066 Vacuolar assembly/sort 83.0 34 0.00073 30.5 12.1 155 12-184 362-533 (846)
374 COG5108 RPO41 Mitochondrial DN 82.4 8.5 0.00018 33.4 7.4 82 10-99 32-115 (1117)
375 smart00028 TPR Tetratricopepti 82.3 3.4 7.4E-05 18.5 3.7 19 94-112 8-26 (34)
376 PF07575 Nucleopor_Nup85: Nup8 81.4 6 0.00013 34.2 6.5 21 240-260 508-528 (566)
377 PF14853 Fis1_TPR_C: Fis1 C-te 81.3 5.4 0.00012 21.9 4.2 27 197-226 7-33 (53)
378 KOG2396 HAT (Half-A-TPR) repea 81.0 32 0.0007 29.0 17.6 202 48-260 312-530 (568)
379 KOG2908 26S proteasome regulat 80.9 26 0.00057 27.8 10.1 64 128-191 81-155 (380)
380 PRK10564 maltose regulon perip 80.9 5.7 0.00012 30.8 5.5 43 83-125 252-295 (303)
381 PF11663 Toxin_YhaV: Toxin wit 80.7 2.6 5.6E-05 28.2 3.2 32 167-200 106-137 (140)
382 KOG2062 26S proteasome regulat 80.6 19 0.0004 31.8 8.8 120 132-255 511-634 (929)
383 KOG1550 Extracellular protein 80.4 38 0.00082 29.3 20.6 178 22-219 228-425 (552)
384 PF08311 Mad3_BUB1_I: Mad3/BUB 80.2 15 0.00032 24.5 8.3 41 140-180 81-123 (126)
385 KOG4521 Nuclear pore complex, 80.0 54 0.0012 30.9 13.7 162 10-179 924-1125(1480)
386 KOG1308 Hsp70-interacting prot 80.0 4.2 9.1E-05 32.1 4.6 92 99-191 126-217 (377)
387 PRK09857 putative transposase; 79.9 27 0.00058 27.3 9.1 65 194-260 209-273 (292)
388 PF11817 Foie-gras_1: Foie gra 79.8 13 0.00028 28.2 7.2 77 69-148 163-244 (247)
389 COG5108 RPO41 Mitochondrial DN 79.8 21 0.00045 31.2 8.8 89 127-218 33-130 (1117)
390 TIGR02508 type_III_yscG type I 79.7 13 0.00028 23.6 8.7 51 131-186 48-98 (115)
391 TIGR02508 type_III_yscG type I 79.6 13 0.00029 23.6 8.1 85 138-230 21-105 (115)
392 PHA02875 ankyrin repeat protei 79.3 26 0.00057 28.7 9.5 13 249-261 217-229 (413)
393 COG2178 Predicted RNA-binding 79.2 21 0.00046 25.8 10.5 64 93-156 35-103 (204)
394 PF10345 Cohesin_load: Cohesin 78.7 45 0.00098 29.2 20.5 196 49-254 28-252 (608)
395 smart00386 HAT HAT (Half-A-TPR 78.6 5.3 0.00011 18.5 3.9 12 139-150 4-15 (33)
396 COG5159 RPN6 26S proteasome re 78.4 30 0.00064 26.9 10.6 160 93-252 9-190 (421)
397 KOG4077 Cytochrome c oxidase, 78.2 17 0.00038 24.2 7.3 38 112-149 74-111 (149)
398 cd08819 CARD_MDA5_2 Caspase ac 78.0 14 0.00029 22.8 7.3 36 168-208 48-83 (88)
399 PF05476 PET122: PET122; Inte 78.0 28 0.0006 26.4 22.4 227 14-259 18-266 (267)
400 PF09986 DUF2225: Uncharacteri 77.6 25 0.00055 26.0 8.0 51 103-153 141-196 (214)
401 KOG4642 Chaperone-dependent E3 77.5 28 0.00061 26.3 10.8 119 59-182 18-143 (284)
402 PF07575 Nucleopor_Nup85: Nup8 77.5 47 0.001 28.8 11.3 92 124-219 374-466 (566)
403 KOG0686 COP9 signalosome, subu 77.4 38 0.00083 27.7 13.0 65 87-151 150-216 (466)
404 KOG4567 GTPase-activating prot 77.3 24 0.00053 27.6 7.8 70 176-251 263-342 (370)
405 KOG2063 Vacuolar assembly/sort 77.2 59 0.0013 29.8 15.8 189 8-204 506-745 (877)
406 TIGR01228 hutU urocanate hydra 76.5 43 0.00094 28.2 9.4 177 65-258 208-424 (545)
407 PRK10564 maltose regulon perip 76.5 6.9 0.00015 30.3 4.8 38 158-195 259-296 (303)
408 KOG0376 Serine-threonine phosp 76.2 14 0.00031 30.6 6.7 106 94-203 11-117 (476)
409 KOG4642 Chaperone-dependent E3 76.0 32 0.00068 26.0 10.9 121 95-217 18-143 (284)
410 COG0735 Fur Fe2+/Zn2+ uptake r 75.7 23 0.0005 24.3 7.3 26 128-153 26-51 (145)
411 PF11838 ERAP1_C: ERAP1-like C 75.7 37 0.0008 26.7 14.8 180 19-216 53-262 (324)
412 KOG4814 Uncharacterized conser 75.5 43 0.00094 29.3 9.4 87 61-150 364-456 (872)
413 COG0790 FOG: TPR repeat, SEL1 75.0 37 0.00079 26.3 21.1 182 63-259 53-269 (292)
414 cd00280 TRFH Telomeric Repeat 75.0 28 0.00061 25.0 8.0 22 163-184 118-139 (200)
415 KOG4507 Uncharacterized conser 74.6 35 0.00075 29.5 8.6 115 104-220 590-705 (886)
416 PF12862 Apc5: Anaphase-promot 74.2 18 0.0004 22.5 8.0 23 198-220 48-70 (94)
417 PF09454 Vps23_core: Vps23 cor 73.7 7.8 0.00017 22.4 3.5 47 86-133 7-53 (65)
418 COG0735 Fur Fe2+/Zn2+ uptake r 73.4 27 0.00058 24.0 6.8 61 74-136 9-69 (145)
419 PF11838 ERAP1_C: ERAP1-like C 73.4 43 0.00093 26.3 13.9 146 67-217 146-305 (324)
420 PRK14956 DNA polymerase III su 73.1 57 0.0012 27.6 12.9 38 154-191 246-283 (484)
421 PF13929 mRNA_stabil: mRNA sta 72.6 43 0.00094 26.0 21.3 220 16-251 6-262 (292)
422 PF09477 Type_III_YscG: Bacter 72.3 23 0.00051 22.8 8.9 80 101-186 20-99 (116)
423 KOG3807 Predicted membrane pro 72.0 49 0.0011 26.4 11.8 56 162-217 281-337 (556)
424 PF11848 DUF3368: Domain of un 71.8 13 0.00029 19.8 4.9 31 203-234 14-44 (48)
425 PF11123 DNA_Packaging_2: DNA 71.7 14 0.0003 21.9 4.1 37 17-64 8-44 (82)
426 KOG0687 26S proteasome regulat 71.2 50 0.0011 26.2 14.2 39 157-195 105-147 (393)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 71.1 28 0.0006 23.2 9.2 94 51-147 22-124 (126)
428 PF09868 DUF2095: Uncharacteri 71.0 24 0.00051 23.0 5.4 31 94-125 68-98 (128)
429 PF09477 Type_III_YscG: Bacter 70.9 25 0.00055 22.7 11.7 74 138-217 22-95 (116)
430 KOG2300 Uncharacterized conser 70.7 64 0.0014 27.3 17.8 166 60-228 332-522 (629)
431 KOG0292 Vesicle coat complex C 69.9 73 0.0016 29.2 9.7 130 97-256 653-782 (1202)
432 PF12862 Apc5: Anaphase-promot 69.7 24 0.00052 21.9 7.7 15 134-148 53-67 (94)
433 KOG3677 RNA polymerase I-assoc 69.4 63 0.0014 26.6 9.5 90 14-115 209-300 (525)
434 KOG2582 COP9 signalosome, subu 69.2 60 0.0013 26.3 12.9 165 90-257 143-346 (422)
435 PF02847 MA3: MA3 domain; Int 69.1 28 0.0006 22.4 7.9 24 126-149 6-29 (113)
436 KOG2063 Vacuolar assembly/sort 69.0 96 0.0021 28.6 15.5 166 90-255 507-712 (877)
437 COG5159 RPN6 26S proteasome re 68.9 54 0.0012 25.6 11.4 127 56-183 8-152 (421)
438 PF13762 MNE1: Mitochondrial s 68.8 35 0.00076 23.5 8.7 79 90-169 42-128 (145)
439 PF14561 TPR_20: Tetratricopep 68.8 25 0.00054 21.8 8.9 30 86-115 21-50 (90)
440 COG4259 Uncharacterized protei 68.5 28 0.0006 22.1 7.0 46 106-151 56-101 (121)
441 PF12554 MOZART1: Mitotic-spin 68.1 6.5 0.00014 21.1 2.2 25 237-261 14-38 (48)
442 KOG3364 Membrane protein invol 67.9 36 0.00077 23.2 8.8 67 154-220 30-100 (149)
443 PF07064 RIC1: RIC1; InterPro 67.9 53 0.0011 25.2 16.6 60 196-255 184-248 (258)
444 PF09454 Vps23_core: Vps23 cor 67.7 20 0.00044 20.7 4.4 49 154-203 6-54 (65)
445 PF10255 Paf67: RNA polymerase 67.1 16 0.00035 29.9 5.2 67 10-79 126-192 (404)
446 KOG1308 Hsp70-interacting prot 67.0 14 0.00031 29.3 4.7 94 132-228 124-218 (377)
447 PF10345 Cohesin_load: Cohesin 66.7 91 0.002 27.4 21.5 191 64-255 374-605 (608)
448 PF02847 MA3: MA3 domain; Int 66.6 29 0.00064 22.3 5.7 24 91-114 6-29 (113)
449 PF10366 Vps39_1: Vacuolar sor 66.5 24 0.00053 22.8 5.1 26 90-115 42-67 (108)
450 KOG2066 Vacuolar assembly/sort 65.9 1E+02 0.0022 27.7 11.3 100 59-168 364-467 (846)
451 PLN03025 replication factor C 65.5 66 0.0014 25.4 10.1 92 166-260 155-257 (319)
452 PF04762 IKI3: IKI3 family; I 65.3 1.2E+02 0.0026 28.4 13.7 139 44-185 688-843 (928)
453 PRK05414 urocanate hydratase; 65.2 71 0.0015 27.1 8.4 179 65-258 217-433 (556)
454 COG5187 RPN7 26S proteasome re 64.8 66 0.0014 25.2 12.6 134 47-184 77-220 (412)
455 PF11663 Toxin_YhaV: Toxin wit 64.0 6.2 0.00014 26.5 2.0 23 239-261 107-129 (140)
456 PF09670 Cas_Cas02710: CRISPR- 63.7 81 0.0018 25.8 12.7 53 97-150 141-197 (379)
457 KOG2659 LisH motif-containing 63.6 60 0.0013 24.3 8.1 100 46-148 21-129 (228)
458 PRK08691 DNA polymerase III su 63.4 1.1E+02 0.0025 27.4 10.9 20 241-260 259-278 (709)
459 smart00804 TAP_C C-terminal do 63.2 7.3 0.00016 22.3 2.0 23 65-87 39-61 (63)
460 cd07153 Fur_like Ferric uptake 62.8 30 0.00065 22.4 5.2 46 162-207 6-51 (116)
461 PRK14956 DNA polymerase III su 62.7 96 0.0021 26.3 10.9 74 185-260 196-281 (484)
462 PF09670 Cas_Cas02710: CRISPR- 62.1 87 0.0019 25.6 11.2 57 58-116 138-198 (379)
463 PRK11639 zinc uptake transcrip 61.0 56 0.0012 23.1 7.1 56 82-138 21-76 (169)
464 KOG0128 RNA-binding protein SA 60.7 1.3E+02 0.0029 27.3 15.7 201 3-219 110-340 (881)
465 PF14561 TPR_20: Tetratricopep 60.6 38 0.00082 21.0 8.7 29 155-183 21-49 (90)
466 COG5191 Uncharacterized conser 59.8 51 0.0011 26.1 6.4 77 84-161 104-181 (435)
467 PF01475 FUR: Ferric uptake re 59.8 30 0.00064 22.7 4.8 45 161-205 12-56 (120)
468 PRK07003 DNA polymerase III su 59.2 1.4E+02 0.0031 27.2 12.6 35 154-189 244-278 (830)
469 PRK11639 zinc uptake transcrip 59.2 61 0.0013 22.9 7.6 46 127-172 30-76 (169)
470 PRK12356 glutaminase; Reviewed 58.9 90 0.002 24.8 10.4 26 192-217 232-257 (319)
471 KOG4814 Uncharacterized conser 58.6 1.3E+02 0.0029 26.6 10.0 86 98-184 365-456 (872)
472 COG4003 Uncharacterized protei 58.5 39 0.00085 20.5 5.0 24 94-117 38-61 (98)
473 PRK13184 pknD serine/threonine 57.9 1.7E+02 0.0036 27.5 12.8 203 27-252 677-896 (932)
474 PF03745 DUF309: Domain of unk 57.7 34 0.00073 19.5 6.0 15 204-218 12-26 (62)
475 PF04762 IKI3: IKI3 family; I 57.1 1.7E+02 0.0037 27.4 15.6 130 11-151 699-843 (928)
476 KOG2471 TPR repeat-containing 57.1 79 0.0017 26.8 7.4 115 10-133 244-380 (696)
477 PF11768 DUF3312: Protein of u 56.9 1.3E+02 0.0028 25.9 11.0 23 92-114 413-435 (545)
478 KOG3636 Uncharacterized conser 56.4 1.2E+02 0.0026 25.4 8.8 85 82-167 178-271 (669)
479 KOG0403 Neoplastic transformat 56.3 1.2E+02 0.0026 25.5 15.4 59 160-219 513-571 (645)
480 PF14649 Spatacsin_C: Spatacsi 56.3 95 0.0021 24.4 7.5 79 142-220 5-88 (296)
481 PF09868 DUF2095: Uncharacteri 55.9 55 0.0012 21.4 5.4 35 128-162 67-101 (128)
482 TIGR01503 MthylAspMut_E methyl 55.5 17 0.00038 30.1 3.5 84 101-188 68-166 (480)
483 PF08870 DUF1832: Domain of un 55.5 56 0.0012 21.4 5.3 21 68-88 6-27 (113)
484 PRK07003 DNA polymerase III su 55.5 1.7E+02 0.0036 26.8 10.7 19 241-259 259-277 (830)
485 KOG1498 26S proteasome regulat 55.1 1.2E+02 0.0026 24.9 16.7 185 64-256 25-241 (439)
486 PRK09857 putative transposase; 55.0 1E+02 0.0022 24.2 9.9 62 127-188 211-272 (292)
487 PF04097 Nic96: Nup93/Nic96; 54.6 1.5E+02 0.0033 26.1 12.9 65 49-116 110-181 (613)
488 PRK06645 DNA polymerase III su 54.6 1.4E+02 0.003 25.7 11.1 20 241-260 271-290 (507)
489 COG0790 FOG: TPR repeat, SEL1 54.5 99 0.0021 23.9 23.1 151 18-187 53-222 (292)
490 KOG0687 26S proteasome regulat 54.1 1.1E+02 0.0024 24.4 10.2 102 154-257 68-174 (393)
491 PF08542 Rep_fac_C: Replicatio 54.1 25 0.00054 21.5 3.5 49 189-240 3-51 (89)
492 PF09986 DUF2225: Uncharacteri 53.1 92 0.002 23.1 10.6 90 131-220 86-194 (214)
493 PF04090 RNA_pol_I_TF: RNA pol 52.7 90 0.0019 22.9 10.3 59 123-181 42-101 (199)
494 PF10475 DUF2450: Protein of u 52.5 1.1E+02 0.0024 23.9 11.6 169 57-237 104-275 (291)
495 TIGR03184 DNA_S_dndE DNA sulfu 52.3 62 0.0013 20.9 5.3 22 68-89 5-27 (105)
496 KOG4567 GTPase-activating prot 52.1 1.2E+02 0.0026 24.1 8.0 71 142-217 263-344 (370)
497 PF10366 Vps39_1: Vacuolar sor 52.0 63 0.0014 20.9 7.5 26 125-150 42-67 (108)
498 KOG1114 Tripeptidyl peptidase 51.9 2.1E+02 0.0045 26.8 16.5 81 174-255 1214-1294(1304)
499 PRK08691 DNA polymerase III su 51.7 1.8E+02 0.004 26.1 12.8 31 158-189 248-278 (709)
500 PF11768 DUF3312: Protein of u 50.6 1.7E+02 0.0036 25.3 11.9 59 54-115 411-472 (545)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-46 Score=320.16 Aligned_cols=247 Identities=18% Similarity=0.273 Sum_probs=162.7
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD-TR 82 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 82 (262)
|+..+|+.+|.+|++.|++++|+++|+.|... +..||..+|+.+|.+|++.|++++|.++|++|... .|
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~----------Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSK----------NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 55666666666666666666666666666443 55666666666666666666666666666666542 24
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI 161 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 161 (262)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|...+. ||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666665 66666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence 66666666666666666666666666666666666666666666666666666666554 66666666666666666666
Q ss_pred ChhHHHHHHHHHHHcCCCCC
Q 037499 242 ELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 242 ~~~~a~~~~~~m~~~g~~pd 261 (262)
++++|.++|++|.+.|+.||
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 66666666666666666665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-45 Score=317.40 Aligned_cols=250 Identities=16% Similarity=0.271 Sum_probs=241.5
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
+|+..+|+.|+.+|++.|++++|.++|+.|.... .+..||..+|++++.+|++.|++++|.++|++|.+. |
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~--------~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g 609 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N 609 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--------CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C
Confidence 5788999999999999999999999999996532 378899999999999999999999999999999996 8
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI 161 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 161 (262)
++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.+. ||..+|++
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999877 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCC
Q 037499 242 ELSLALGFKEEMVRNKIEMDA 262 (262)
Q Consensus 242 ~~~~a~~~~~~m~~~g~~pd~ 262 (262)
++++|.+++++|.+.|+.||.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999983
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=296.06 Aligned_cols=238 Identities=17% Similarity=0.229 Sum_probs=226.0
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
.++..+++.|+.+|++.|++++|.++|+.|.. +|..+|++++.+|++.|++++|+++|++|.+. |
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g 320 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G 320 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 36778899999999999999999999999932 48999999999999999999999999999886 8
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+|++|+.+|++.|++++|.++|++|.+ +|..+||++
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~l 397 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNAL 397 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 899999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|+.++.+|++.|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998877999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCC
Q 037499 243 LSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 243 ~~~a~~~~~~m~~~g~~pd 261 (262)
+++|.+++++| ++.||
T Consensus 478 ~~eA~~~~~~~---~~~p~ 493 (697)
T PLN03081 478 LDEAYAMIRRA---PFKPT 493 (697)
T ss_pred HHHHHHHHHHC---CCCCC
Confidence 99999998765 56666
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=288.23 Aligned_cols=252 Identities=16% Similarity=0.169 Sum_probs=196.9
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCC-------------------------CCCCCCCCCHHHHH
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEA-------------------------QPLKPFRYNLLHYD 55 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~ 55 (262)
|..|+..+|+.++.+|++.|++++|+++|++|...+..... ....+..+|..+|+
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 34567777888888888888888888888877544211000 00123455666677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 135 (262)
+++.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 777777777777777777777753 467788888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499 136 GKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 214 (262)
|++++|.+++..|.+.+. +|..+|++++.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888776 8888888888888888888888888888754 67888888888888888888899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCC
Q 037499 215 EDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR-NKIEMDA 262 (262)
Q Consensus 215 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~pd~ 262 (262)
++|.+. |+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.||.
T Consensus 415 ~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 415 ERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred HHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 888776 8889999999999999999999999999999876 5888873
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.4e-40 Score=285.19 Aligned_cols=241 Identities=17% Similarity=0.138 Sum_probs=140.7
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
|.+|+..+|+.++.+|++.|++++|+++|+.|... +..||..+|+.++.+|++.+++..+.+++..+.+.
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~----------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA----------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc----------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 34566677777777777777777777777776543 44555555544444444444444444444444442
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY 159 (262)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 159 (262)
|+.|+..+++.|+.+|++.|+++.|.++|++|. .||..+||+++.+|++.|+.++|+++|++|...+. ||..||
T Consensus 217 -g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 217 -GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred -CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 444444455555555555555555555555554 34555566666666666666666666666655555 566666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 239 (262)
+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHh
Confidence 66666666666665566666555555555666666666666666666666666665553 2455556666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCC
Q 037499 240 VGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 240 ~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.|++++|.++|++|.+.|+.||
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCC
Confidence 6666666666666666666665
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-39 Score=281.46 Aligned_cols=235 Identities=16% Similarity=0.146 Sum_probs=201.5
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
+|+..+++.|+..|++.|+++.|.++|+.|. .+|..+|+++|.+|++.|++++|+++|.+|.+. |
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g 283 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP--------------RRDCISWNAMISGYFENGECLEGLELFFTMREL-S 283 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC--------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 4677788889999999999999999999983 247888999999999999999999999999886 7
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. +|..+|+++
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~l 360 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAM 360 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHH
Confidence 88999999999999999999999999999999888889999999999999999999999999888864 788888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+.+|++.|+
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCC
Confidence 8888888888888888888888888888888888888888888888888888888776 888888888888888888888
Q ss_pred hhHHHHHHHHHHHc
Q 037499 243 LSLALGFKEEMVRN 256 (262)
Q Consensus 243 ~~~a~~~~~~m~~~ 256 (262)
+++|.++|++|.+.
T Consensus 440 ~~~A~~vf~~m~~~ 453 (857)
T PLN03077 440 IDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCC
Confidence 87777777776543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.6e-22 Score=158.49 Aligned_cols=235 Identities=13% Similarity=0.057 Sum_probs=123.7
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE--- 86 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 86 (262)
..++..+.+.|++++|..+|+.+.. ..+.+..++..++..+.+.|++++|++.++.+.+.....+.
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 179 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVD-----------EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI 179 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHc-----------CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH
Confidence 3444444444555555555444422 12234445555555555555555555555555443111111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHG 165 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~ 165 (262)
...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+.+.|++++|.++|+++....+ ....+++.++.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH
Confidence 1123344445555555555555555555443 33344555555556666666666666666554433 223445556666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCC
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA---VGE 242 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~ 242 (262)
|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~ 333 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGR 333 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCcc
Confidence 66666666666666666554 234444455666666666666666666666543 4666666655555443 345
Q ss_pred hhHHHHHHHHHHHcCCCCC
Q 037499 243 LSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 243 ~~~a~~~~~~m~~~g~~pd 261 (262)
.+++..++++|.+.++.||
T Consensus 334 ~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 334 AKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred chhHHHHHHHHHHHHHhCC
Confidence 6666666666666666655
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=1.1e-21 Score=157.52 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=199.5
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.+..++..++..+.+.|++++|..+++.+...+. .........+..++..+.+.|+++.|+.+|+++.+.
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~- 136 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-------LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE- 136 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-
Confidence 455666788999999999999999999998855321 000112357888999999999999999999999874
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (262)
-+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+..+.+..
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 215 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR 215 (389)
T ss_pred -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH
Confidence 356678899999999999999999999999987652221 124566777888999999999999999887766777
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
.+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .|+...+..+...+
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~ 292 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHH
Confidence 888899999999999999999999998643333567888999999999999999999999864 57777778889999
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 037499 238 CAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~~ 256 (262)
.+.|++++|..+++++.+.
T Consensus 293 ~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh
Confidence 9999999999999998774
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=2.9e-19 Score=157.57 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=177.4
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|.+...+..++..+.+.|++++|.++++.+.. ..+.+...|..++.++...|++++|+..|+++.+..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAAD-----------AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 44455566677777777777777777777632 344567778888888888888888888888877642
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+.+...+..+..++.+.|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++.+....+.+...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 4556667777788888888888888888877664 55667777888888888888888888888877777777778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
...+.+.|++++|...|+.+...+ |+..++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|...|+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888887754 44466667777788888888888888887763 34567777778888888888
Q ss_pred hhHHHHHHHHHHHc
Q 037499 243 LSLALGFKEEMVRN 256 (262)
Q Consensus 243 ~~~a~~~~~~m~~~ 256 (262)
+++|.++|+++.+.
T Consensus 786 ~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 786 YDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888764
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=3.6e-19 Score=156.91 Aligned_cols=235 Identities=17% Similarity=0.100 Sum_probs=127.0
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|.++..+..++..+.+.|++++|...|+.+.. ..+.+..++..++..+...|++++|.++++.+.+.
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-- 698 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALE-----------LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-- 698 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 44555666667777777777777777766632 22334555555666666666666666666655553
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
.+.+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+....+.+...+..+
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 776 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL 776 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 23444455555555555555555555555555432 2234444444555555555555555555544444444455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC--------------------------------CCchHHHHHHHHHHHhhCCHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRL--------------------------------QPTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~--------------------------------~~~~~~~~~li~~~~~~g~~~~a 210 (262)
...|.+.|++++|...|+++.+... +.+..++..+...+...|++++|
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555555444321 11233444455555556666666
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
.++++++.+. + +.+..++..+..++.+.|+.++|.+++++|+
T Consensus 857 ~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 857 LPLLRKAVNI-A-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHhh-C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666553 1 2255566666666666666666666666654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=5.9e-17 Score=137.16 Aligned_cols=236 Identities=14% Similarity=0.043 Sum_probs=117.5
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++..+..++..+.+.|++++|++.|+.... ..+.+...+..+...+...|++++|...++.+....
T Consensus 106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~-----------l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWL-----------AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 456666667777777777777777777777633 223355666666777777777777777666665432
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+.+...+..+ ..+...|++++|...++.+.+..-.++...+..+..++.+.|++++|+..+++.....+.+...+..
T Consensus 175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2222222222 2244555555555555555443211222223333444445555555555555554444444444444
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 162 LMHGCVVSRRLED----AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 162 l~~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
+...+...|++++ |...|++..+... .+...+..+...+.+.|++++|...+++..+. .+.+...+..+..+|
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 5555555555443 4444554444321 13334444444444455555555555444432 111233333444444
Q ss_pred HhcCChhHHHHHHHHHH
Q 037499 238 CAVGELSLALGFKEEMV 254 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~ 254 (262)
.+.|++++|.+.++++.
T Consensus 329 ~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 329 RQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44444444444444444
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=4.5e-17 Score=137.86 Aligned_cols=236 Identities=12% Similarity=0.002 Sum_probs=194.3
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
....+..++..+...|++++|+..|+.... ..+.+...|..+...+...|++++|+..|++..+.. +
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p 396 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIE-----------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--S 396 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 344577888889999999999999999844 333467788999999999999999999999998753 5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
.+..++..+..++...|++++|++.|++..+.. +.+...+..+..++.+.|++++|+..|++.....+.+...++.+..
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGE 475 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 567889999999999999999999999999875 5667888889999999999999999999999887788899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchH------HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLV------TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
.+...|++++|...|++........+.. .++..+..+...|++++|.+++++..+. .+.+...+..+...+.
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 9999999999999999988763321111 1222223344569999999999998763 2334557889999999
Q ss_pred hcCChhHHHHHHHHHHHc
Q 037499 239 AVGELSLALGFKEEMVRN 256 (262)
Q Consensus 239 ~~g~~~~a~~~~~~m~~~ 256 (262)
+.|++++|+..|++..+.
T Consensus 554 ~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 554 QQGDVDEALKLFERAAEL 571 (615)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999998653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.3e-16 Score=135.06 Aligned_cols=237 Identities=10% Similarity=-0.040 Sum_probs=194.3
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++..+..++.++...|++++|...++.+... .+.+...+..+. .+...|++++|+..++.+.+..
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----------~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----------VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----------CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC
Confidence 5677778899999999999999999999877332 222444444443 4788999999999999987752
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCChh
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR----MTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 157 (262)
-.++......+..++.+.|++++|+..|++..+.. +.+...+..+...+...|++++ |+..|++.....+.+..
T Consensus 208 -~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 208 -ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred -CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 12334455566788899999999999999999875 6677888899999999999986 89999999998888889
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-VFASLIKG 236 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~ 236 (262)
.+..+...+.+.|++++|...+++..+... .+...+..+..++.+.|++++|...++++... .|+.. .+..+..+
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~a 361 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 999999999999999999999999998743 34567777889999999999999999999864 45543 34445678
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 037499 237 LCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~~ 256 (262)
+...|+.++|...|++..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999998774
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=2e-17 Score=131.67 Aligned_cols=239 Identities=13% Similarity=0.093 Sum_probs=165.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.-+..|..|+..|...+.+++|+..|.+... --+.....|..+...|..+|.++.|+..+++..+..
T Consensus 248 dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-----------lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 248 DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-----------LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh-----------cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 344445555566666666666666665555422 112244555555556666666666666666666532
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+--+..|+.|..++-..|++.+|...|.+..... +....+.+.|...|.+.|.+++|..+|....+..+.-...++.
T Consensus 317 --P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 317 --PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred --CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 2235667777777777777777777777777654 4445667777777777888888888877777766656667788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHh
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCA 239 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 239 (262)
+...|-+.|++++|...|++... +.|+ ...|+.+...|-..|+.+.|++.+.+... +.|. ...++.|...|..
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKD 468 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhc
Confidence 88888888888888888887776 4454 35777787888888888888888887773 4554 4567888888889
Q ss_pred cCChhHHHHHHHHHHHcCCCCC
Q 037499 240 VGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 240 ~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.|++.+|++-+++.++ ++||
T Consensus 469 sGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred cCCcHHHHHHHHHHHc--cCCC
Confidence 9999999999988877 6776
No 15
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.8e-17 Score=127.10 Aligned_cols=234 Identities=14% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|.++.-|..++......++++.|++.++.+... .+.++..+..++.. ...+++++|.+++....++
T Consensus 41 ~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-----------~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-- 106 (280)
T PF13429_consen 41 PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-----------DKANPQDYERLIQL-LQDGDPEEALKLAEKAYER-- 106 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-----------cccccccccccccc-ccccccccccccccccccc--
Confidence 334444555555666666666666666666432 12244445555555 5667777777776665543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
.+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++++++..+..|.|......
T Consensus 107 -~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 107 -DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp ------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred -ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 2445556666677777777777777777765422 23455666777777777777777777777777776666777777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|++..+. .+.|......+..++...|
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccc
Confidence 7777777777777777777766653 345556667777777777777777777777653 2336666667777777777
Q ss_pred ChhHHHHHHHHHH
Q 037499 242 ELSLALGFKEEMV 254 (262)
Q Consensus 242 ~~~~a~~~~~~m~ 254 (262)
+.++|.++..+..
T Consensus 263 ~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 263 RKDEALRLRRQAL 275 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 7777777766654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=4.9e-15 Score=125.54 Aligned_cols=163 Identities=12% Similarity=0.034 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
.+..+..++...|++++|+..|++..+.. +.....|..+..++...|++++|+..|+......+.+..+|..+...+..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445555556667777777777666543 33345666666677777777777777777766666666777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+. .+.+...|..+..++...|++++|++
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 777777777777777653 224555666666777777777777777777653 23345667777777777888888887
Q ss_pred HHHHHHH
Q 037499 249 FKEEMVR 255 (262)
Q Consensus 249 ~~~~m~~ 255 (262)
.|++..+
T Consensus 489 ~~~~Al~ 495 (615)
T TIGR00990 489 KFDTAIE 495 (615)
T ss_pred HHHHHHh
Confidence 7777665
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=7.4e-16 Score=122.85 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=200.7
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
--.+.|..|+..+-.+|+...|+..|++... -.+.=...|..|...|...+.+++|+..+.......
T Consensus 216 ~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk-----------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-- 282 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK-----------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-- 282 (966)
T ss_pred ceeeeehhcchHHhhcchHHHHHHHHHHhhc-----------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--
Confidence 3456789999999999999999999999844 333345688899999999999999999999988643
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.....+..+...|...|+.+.|+..|++..+.. +.-..+|+.|..++-..|+..+|...|.+.....+.-....+.+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 4456788889999999999999999999998864 445688999999999999999999999999988887788899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVG 241 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 241 (262)
.+|...|.++.|.++|....+- .|. ...++.|...|-++|++++|+..+++.. .+.|+. ..|+.+...|...|
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhh
Confidence 9999999999999999998874 343 4578889999999999999999999988 568864 57889999999999
Q ss_pred ChhHHHHHHHHHHH
Q 037499 242 ELSLALGFKEEMVR 255 (262)
Q Consensus 242 ~~~~a~~~~~~m~~ 255 (262)
+.+.|.+.+.+.+.
T Consensus 437 ~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999988876
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=2.3e-14 Score=124.91 Aligned_cols=234 Identities=9% Similarity=-0.034 Sum_probs=182.6
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
++..+..++.++.. +++++|+..|...... .|+......+...+...|++++|+..|+++... +
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~------------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR------------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH---D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---C
Confidence 55667888888876 8888999977776332 234444444555667899999999999988653 4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
|+...+..+..++.+.|++++|...+++..+.. +.+...+..+.......|++++|+..+++..+..+ +...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP-SANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 555556777888899999999999999998765 44444444444455566999999999999987655 5888999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 244 (262)
++.+.|++++|...+++..... +.+...+..+..++...|++++|+..+++..+. .+-+...+..+..++...|+++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999874 235667788888899999999999999999864 2346678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 037499 245 LALGFKEEMVRNKIEMD 261 (262)
Q Consensus 245 ~a~~~~~~m~~~g~~pd 261 (262)
+|+..+++..+ +.|+
T Consensus 695 eA~~~l~~Al~--l~P~ 709 (987)
T PRK09782 695 ATQHYARLVID--DIDN 709 (987)
T ss_pred HHHHHHHHHHh--cCCC
Confidence 99999999887 3454
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=1.2e-13 Score=102.92 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=171.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 34678888999999999999999999999874 25567788889999999999999999999998875 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (262)
...+...|++++|.+.+++...... .....+..+...+...|++++|...+++...... .+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 9999999999999999999987543 3456778889999999999999999999988642 346678888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 185 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999875 344667777888889999999999999888765
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=4.7e-14 Score=127.12 Aligned_cols=239 Identities=12% Similarity=0.005 Sum_probs=179.9
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
+..++..+...|++++|++.|++... ..+.+...+..+...+.+.|++++|+..++++.+.. +.+..
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~-----------~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~ 530 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLA-----------LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPE 530 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHH
Confidence 34566778889999999999999844 344577788899999999999999999999998743 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhc---------------------------------------CCCCChhhHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSF---------------------------------------NVQRTVKSFNTLL 129 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll 129 (262)
.+..+...+...++.++|+..++.+... ..+.+...+..+.
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 4443333444455555555544432110 1245556777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
..+.+.|++++|++.|++.....+.+...+..++..+...|++++|...++...+.. +.+..++..+..++...|++++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~e 689 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAA 689 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHH
Confidence 899999999999999999999888889999999999999999999999999887652 2345566777888889999999
Q ss_pred HHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCC
Q 037499 210 ALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVR-NKIEMD 261 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~pd 261 (262)
|.++++++.....-.| +...+..+...+...|+.++|++.|++... .|+.|+
T Consensus 690 A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 690 AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 9999999986422222 234666678889999999999999998753 456553
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=7.3e-14 Score=104.02 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=168.4
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
.+..++..+...|++++|.+.|+.... ..+.+...+..+...+...|++++|.+.+++..+.. +.+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~ 99 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALE-----------HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNG 99 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH
Confidence 467788999999999999999998843 334467888999999999999999999999998753 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
..+..+...+...|++++|.+.+++..+... +.....+..+..++...|++++|...+.+.....+.+...+..+...+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 7888899999999999999999999986432 223456777888999999999999999999888777788899999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999887 344667777788888899999999999888764
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.68 E-value=7.6e-14 Score=125.78 Aligned_cols=238 Identities=8% Similarity=-0.032 Sum_probs=169.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH-------------------------
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDL------------------------- 56 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 56 (262)
+|.++..+..++.++...|++++|++.|+.+... .+.+...+..
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-----------~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-----------DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 4566667788999999999999999999998542 1223333322
Q ss_pred -----------------HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 037499 57 -----------------IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ 119 (262)
Q Consensus 57 -----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (262)
+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 3344556788889999998888743 4567778888888999999999999999887653 3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------------------------cCCCChhHH
Q 037499 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK----------------------------------------YVSPDACSY 159 (262)
Q Consensus 120 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------------------------------~~~~~~~~~ 159 (262)
.+...+..+...+...++.++|+..++.+.. ..+.+...+
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~ 606 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID 606 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence 3444433333333444444444444333210 123555667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 239 (262)
..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|.+.++.+.+. -+.+..++..+..++..
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHh
Confidence 778888889999999999999988864 336778888888999999999999999987642 22345566777788889
Q ss_pred cCChhHHHHHHHHHHHc
Q 037499 240 VGELSLALGFKEEMVRN 256 (262)
Q Consensus 240 ~g~~~~a~~~~~~m~~~ 256 (262)
.|++++|.++++++.+.
T Consensus 684 ~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999988764
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.4e-15 Score=116.71 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=119.3
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
+.++..+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++++.++++.+.....
T Consensus 75 ~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 75 KANPQDYERLIQL-LQDGDPEEALKLAEKAYER------------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred ccccccccccccc-ccccccccccccccccccc------------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 4456667777777 7999999999999877433 24667788899999999999999999999887555
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
.+.+...|..+...+.+.|+.++|++.+++..+.. |.+......++..+...|+.+++.+++.......+.|+..+..+
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 56788899999999999999999999999999875 55688899999999999999999999999988777788889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..+|...|+.++|...|++..+.. +.|+.+...+..++...|+.++|.++..++.+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 999999999999999999999863 34788889999999999999999999887754
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=9.6e-14 Score=115.91 Aligned_cols=217 Identities=11% Similarity=0.018 Sum_probs=167.4
Q ss_pred CChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 20 KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR---------AKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 20 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
+++++|++.|++..+ ..+.+...|..+..++.. .+++++|...+++..+.. +.+...+
T Consensus 275 ~~~~~A~~~~~~Al~-----------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~ 341 (553)
T PRK12370 275 YSLQQALKLLTQCVN-----------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQAL 341 (553)
T ss_pred HHHHHHHHHHHHHHh-----------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHH
Confidence 456899999999844 333456677766665542 245889999999999853 5677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|+..+++..+..+.+...+..++..+...|
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 889999999999999999999999886 6667888999999999999999999999999988755555555555677789
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
++++|...++++.....+-+...+..+..++...|+.++|...+.++... .|+. ...+.+...|...| ++|...
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~ 495 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPT 495 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHH
Confidence 99999999999887632224555777778888999999999999998653 4543 34455555677777 477777
Q ss_pred HHHHHH
Q 037499 250 KEEMVR 255 (262)
Q Consensus 250 ~~~m~~ 255 (262)
++.+.+
T Consensus 496 l~~ll~ 501 (553)
T PRK12370 496 IREFLE 501 (553)
T ss_pred HHHHHH
Confidence 777654
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.2e-14 Score=103.67 Aligned_cols=231 Identities=15% Similarity=0.124 Sum_probs=186.2
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCNV 93 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 93 (262)
+.-+.+.++|+++|-.|. ...+.+..+.-+|.+.|.+.|.+++|+++.+.+.++++.+.+. .....|
T Consensus 45 fLLs~Q~dKAvdlF~e~l-----------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 45 FLLSNQPDKAVDLFLEML-----------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHhhcCcchHHHHHHHHH-----------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334788999999999994 3555677888899999999999999999999999875544443 345668
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----hhHHHHHHHHHHh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD----ACSYNILMHGCVV 168 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 168 (262)
..-|...|-+|.|+.+|..+.+.+ .--..+..-|+..|-...+|++|+++-+++.+.+. +. ...|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 888999999999999999999866 45567888899999999999999999998887766 22 3456777788888
Q ss_pred cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
..+.++|...+.+..+.+.+ .+..=-.+.+.....|+++.|++.++.+.++ ....-..+...|..+|...|+.++...
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 89999999999999886432 2333334567788999999999999999876 333345678889999999999999999
Q ss_pred HHHHHHHcCCCC
Q 037499 249 FKEEMVRNKIEM 260 (262)
Q Consensus 249 ~~~~m~~~g~~p 260 (262)
++.++.+..-.+
T Consensus 271 fL~~~~~~~~g~ 282 (389)
T COG2956 271 FLRRAMETNTGA 282 (389)
T ss_pred HHHHHHHccCCc
Confidence 999988764433
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=7.6e-14 Score=107.03 Aligned_cols=241 Identities=15% Similarity=0.195 Sum_probs=196.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
.|..+.++..+|..+++-...++|.++++..... ..+.+..+||.+|.+-+-... .+++.+|...
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~----------k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq- 267 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAA----------KGKVYREAFNGLIGASSYSVG----KKLVAEMISQ- 267 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh----------hheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-
Confidence 5788899999999999999999999999988654 557799999999976654433 7888899887
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhc-----
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEH----ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR-MTDLFQIMEKY----- 151 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----- 151 (262)
.+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ |..++..+...
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 599999999999999999998765 56778899999999999999999999998877644 44444444332
Q ss_pred ----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 152 ----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 152 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+.|...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....|+....+...+.|+.|...
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 12456677888888999999999999887766431 33332 33566777888999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499 221 YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 221 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
-+-|+..+...++++....|.++-.-+++.+++..|-
T Consensus 428 -~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 428 -AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred -eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 6778999999999999999999999999999888773
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=2.1e-13 Score=119.09 Aligned_cols=225 Identities=7% Similarity=-0.103 Sum_probs=183.7
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.++..+...|++++|...|+.+... +|+...+..+...+.+.|++++|.+.+++..+.. +.+...+
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~ 579 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALY 579 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHH
Confidence 3345556899999999999987332 3344556778889999999999999999998752 4444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+.....+.|++++|+..|++..+.. |+...|..+..++.+.|++++|+..+++.....+.+...++.+..++...|
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 444555556799999999999999864 678899999999999999999999999999999989999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA-QVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
++++|+..+++..+... -+...+..+..++...|++++|+..+++..+. .|+. .+.........+..+++.+.+-
T Consensus 658 ~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 658 DIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999998743 36678888999999999999999999999853 5654 4555556667777778888887
Q ss_pred HHHHHH
Q 037499 250 KEEMVR 255 (262)
Q Consensus 250 ~~~m~~ 255 (262)
+.+...
T Consensus 734 ~~r~~~ 739 (987)
T PRK09782 734 VGRRWT 739 (987)
T ss_pred HHHHhh
Confidence 776655
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=9.3e-14 Score=116.01 Aligned_cols=236 Identities=14% Similarity=-0.006 Sum_probs=174.1
Q ss_pred CCCCCCCHHHHHHHHh---------hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 2 NKAKPTSPFRLASLLR---------LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQ 72 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (262)
+|.++..+..++.++. ..+++++|...+++... -.+.+...|..+...+...|++++|+.
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~-----------ldP~~~~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE-----------LDHNNPQALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4555566666665544 33558999999999844 445588899999999999999999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
.|++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..++..+...|++++|+..+++.....
T Consensus 360 ~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 360 LFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 999999853 5567788889999999999999999999999875 3334444445556777899999999999987765
Q ss_pred C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499 153 S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231 (262)
Q Consensus 153 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 231 (262)
+ .++..+..+..++...|++++|...++++.... +.+....+.+...|...| +.|...++.+.+.....|....+.
T Consensus 437 ~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~ 513 (553)
T PRK12370 437 LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL 513 (553)
T ss_pred cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence 4 456667888899999999999999999976652 223344555555667767 478887877776544444444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 232 SLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
.++ |.-.|+-+.+..+ +++.+.|
T Consensus 514 ~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 514 PLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHH--HHHHhhhHHHHHH-HHhhccc
Confidence 444 5666676666665 7776654
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=9.5e-15 Score=117.16 Aligned_cols=243 Identities=14% Similarity=-0.005 Sum_probs=168.1
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCC----------------------CCC-CCCCCCCCHHHHHHHHHHHHh
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNT----------------------EAQ-PLKPFRYNLLHYDLIITKLGR 63 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~~~-~~~~~~~~~~~~~~l~~~~~~ 63 (262)
.....++.+|...+++++|.++|+.+++..... ..+ -+.-.+-.+.+|-++.++|+-
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 345678999999999999999999886542111 000 011123456677777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
+++.+.|++.|++..+-+ +-...+|+.+..-+.....+|.|...|+..+... +.+..+|-.+...|.+.++++.|+-
T Consensus 434 Qkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHH
Confidence 777888888777777632 2256777777777777777777777777776543 3344455556677778888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 037499 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223 (262)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (262)
-|++..+..+.+.+....+...+.+.|+.++|++++++......+ |+..--.-+..+...+++++|+..++++.+ -+
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~v 587 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LV 587 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hC
Confidence 888888777777777777777888888888888888887776544 333323344556667888888888888864 23
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 224 KPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 224 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+-+...|..+...|.+.|+.+.|+.-|--+.+
T Consensus 588 P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 33455677777788888888888776666554
No 30
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.8e-13 Score=99.05 Aligned_cols=210 Identities=16% Similarity=0.185 Sum_probs=168.8
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|....+...|++.|.+.|..++|+.+-+.+..+++ . .+.--......|..-|...|-+|+|..+|..+.+..
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd------l-T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD------L-TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC------C-chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence 345556678999999999999999999999977643 1 222233456678889999999999999999998853
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (262)
..-......|+..|-..++|++|+++-+++.+.+-.+.. ..|--+...+....+.+.|..++.+..+..+....
T Consensus 138 --efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR 215 (389)
T COG2956 138 --EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR 215 (389)
T ss_pred --hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence 344566888999999999999999999999887644432 23555666666778899999999999888777777
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.--.+.+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+.
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777888899999999999999999998866555677888889999999999999888887653
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=1.1e-12 Score=105.28 Aligned_cols=221 Identities=15% Similarity=0.056 Sum_probs=158.1
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHY--DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
.+..+.|+++.|.+.|..+.+. .|+.... ......+...|+++.|.+.++.+.+.. |-++....
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~------------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ 191 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAEL------------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLR 191 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc------------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 3336777888888877777332 2232222 233567777777778877777777642 55566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC-----------------------------------------CCChhhHHHHHH
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFNV-----------------------------------------QRTVKSFNTLLN 130 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------------~~~~~~~~~ll~ 130 (262)
.+...|.+.|++++|.+++..+.+.+. +.+......+..
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~ 271 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH
Confidence 777777777777777777777665432 223344555667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 210 (262)
.+...|+.++|.+++++..+ ..++... .++.+....++.+++.+..+...+.. +-|...+..+.+.|.+.+++++|
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 77788888888888888876 3344422 23344445688888888888888763 33566778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+.|+...+ ..|+...|..+...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999985 479999999999999999999999999998754
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.2e-12 Score=103.16 Aligned_cols=230 Identities=13% Similarity=0.028 Sum_probs=137.4
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
..+.+..+.|+++.|.+.++...+. ...+...........+...|+++.|.+.++.+.+.. |-+..++
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~----------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l 190 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAEL----------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVL 190 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 3345555566666666666665221 000111223334555566666666666666666542 4445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----------------------------------------CChhhHHHHH
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQ-----------------------------------------RTVKSFNTLL 129 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------------------------------~~~~~~~~ll 129 (262)
..+...+.+.|++++|.+.+..+.+.+.. .+...+..+.
T Consensus 191 ~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a 270 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence 66666666666666666666655544311 1444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch--HHHHHHHHHHHhhC
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACS--YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL--VTFGTLIYGLCLEL 205 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g 205 (262)
..+...|+.++|.+++++..+..+.+... ...........++.+.+.+.++...+.. +-|. ....++...+.+.|
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcc
Confidence 66666777777777777776655533321 1111222233466667777776666542 2233 45567778888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 206 RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 350 ~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 350 EFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988853322 447888888888888888999888988888754
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=2.4e-12 Score=103.32 Aligned_cols=221 Identities=12% Similarity=0.030 Sum_probs=169.5
Q ss_pred hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH--HH
Q 037499 17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLH-YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC--NV 93 (262)
Q Consensus 17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 93 (262)
.-.|++++|.+.+...... .+++.. |........+.|+++.|.+.+.++.+. .|+..... ..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~------------~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~ 159 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH------------AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITR 159 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc------------ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHH
Confidence 3479999999999876332 112333 444455558999999999999999874 45554332 34
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------------------
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------------------- 153 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------- 153 (262)
...+...|++++|.+.++++.+.. |-+......+...|.+.|++++|.+++..+.+...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999886 66788999999999999999999988888875433
Q ss_pred ----------------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499 154 ----------------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211 (262)
Q Consensus 154 ----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 211 (262)
.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHH
Confidence 13334456677788999999999999998884 4454322 233444669999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 212 KLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 212 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+..+...+. .+-|...+..+...|.+.|++++|.+.|+...+. .|+
T Consensus 315 ~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~ 360 (398)
T PRK10747 315 KVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPD 360 (398)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 999999874 3446667888999999999999999999999874 454
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=1.4e-12 Score=112.94 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=161.3
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
.+..++.++...|++++|.++|+.... ..+.+...+..++..+...|++++|+..++++.+. .+.+.
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~-----------~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~ 117 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALS-----------LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKA 117 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 467888889999999999999998733 33446777778888889999999999999998875 35556
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH----------------------
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLF---------------------- 145 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~---------------------- 145 (262)
. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..++|++.+
T Consensus 118 ~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~ 195 (765)
T PRK10049 118 N-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELV 195 (765)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6 8888888889999999999999988865 445556666666666666655444333
Q ss_pred ------------------------HHHHhcCC--CChh-HHH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHH
Q 037499 146 ------------------------QIMEKYVS--PDAC-SYN----ILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVT 193 (262)
Q Consensus 146 ------------------------~~~~~~~~--~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~ 193 (262)
+.+.+..+ |+.. .+. ..+.++...|++++|...|+.+.+.+.. |+. .
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a 274 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A 274 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence 33333211 2211 111 1123445678889999999998877532 332 2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP--DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...+..+|...|++++|+..|+++.+.....+ ....+..+..++...|++++|.++++++.+.
T Consensus 275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 275 QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 22246678889999999999998875311111 1345666677788899999999999888764
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.1e-13 Score=101.96 Aligned_cols=228 Identities=13% Similarity=0.120 Sum_probs=183.2
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCN 92 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 92 (262)
.++....+.+++++-.+..... |++.+...-+....+.-...+++.|+.+|+++.+.+.... |..+|+.
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~----------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSV----------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 4444555666776666666433 4555555555555666667788888888888877543332 2334443
Q ss_pred -------------------------------HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037499 93 -------------------------------VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141 (262)
Q Consensus 93 -------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 141 (262)
+.+-|+-.++.++|..+|++..+.+ +....+|+.+.+-|....+...|
T Consensus 305 ~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 305 VLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3445566778999999999999987 66778999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 037499 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221 (262)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 221 (262)
++.++...+..+.|-..|--+..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+...-
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~- 461 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL- 461 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999999999863 447889999999999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 222 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
-..+...+..|.+.|-+.++.++|...|++.++
T Consensus 462 -~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 462 -GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 234667899999999999999999999988765
No 36
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.8e-13 Score=99.89 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=199.3
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..++..|.+.|-+.+|.+-|+..... .|.+.||..|-+.|.+-.+...|+.++.+-.+. ++-++..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh
Confidence 57889999999999999999987543 457889999999999999999999999999874 4556655
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
..-..+.+...++.+.|.++|+...+.. +.++....++...|.-.++.+-|+..|+++...|..++..|+.+.-+|.-.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya 371 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA 371 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence 6678888999999999999999998876 678888888888999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 247 (262)
++++-++.-|++....-..|+ ...|-.+-......|++..|.+.|+-... .-.-+...++.|.-.-.+.|++++|.
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHH
Confidence 999999999999887644444 34666677778889999999999998875 33446778998888889999999999
Q ss_pred HHHHHHHHcCCCCC
Q 037499 248 GFKEEMVRNKIEMD 261 (262)
Q Consensus 248 ~~~~~m~~~g~~pd 261 (262)
.++..... +.||
T Consensus 450 sll~~A~s--~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHhhh--hCcc
Confidence 99998765 4443
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.2e-13 Score=110.88 Aligned_cols=205 Identities=15% Similarity=0.044 Sum_probs=177.3
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
.+|.+|.+|-.+++.|..+++.+.|++.|++... -.+....+|..+..-+.....+|.|...|+.....
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3688999999999999999999999999999843 34447889999999999999999999999988753
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160 (262)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 160 (262)
. +-+-..|.-+...|.+.++++.|+-.|++..+.+ |.+.+....+...+.+.|+.|+|+.++++.....+.|+-.--
T Consensus 485 ~--~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 D--PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred C--chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 2 2223355667888999999999999999999987 677788888889999999999999999999998888888877
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..+..+...+++++|+..++++++. ++.+...|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 8888888999999999999999996 3345667888889999999999999999988753
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=1.2e-11 Score=106.32 Aligned_cols=230 Identities=9% Similarity=-0.009 Sum_probs=125.0
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.++..+...|+.++|+..+++... +.+........+...+...|++++|+++|+++.+.. +.++..+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~-----------p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l 139 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS-----------SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLI 139 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc-----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Confidence 555556666666666666666521 222233333333456666666666666666666642 4445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-----
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG----- 165 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~----- 165 (262)
..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|++.++++.+..+.+...+..+..+
T Consensus 140 ~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 140 SGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 55666666666666666666666654 34444443333333334444446666666655544333333333333
Q ss_pred --------------------------------------------------------------------------------
Q 037499 166 -------------------------------------------------------------------------------- 165 (262)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (262)
T Consensus 218 ~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 218 IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence
Q ss_pred ----HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHH
Q 037499 166 ----CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDAQVFASLIKGL 237 (262)
Q Consensus 166 ----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~ 237 (262)
+...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+++.+....+ ..++......|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 334455555555555555554433344555556666666666666666666654321 122333345666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 037499 238 CAVGELSLALGFKEEMVR 255 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~ 255 (262)
...+++++|..+++++.+
T Consensus 378 ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HhcccHHHHHHHHHHHHh
Confidence 677777777777776665
No 39
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.56 E-value=8.4e-12 Score=108.17 Aligned_cols=232 Identities=8% Similarity=-0.018 Sum_probs=175.8
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
..-.+.+....|+.++|++++..... ..+.+...+..+...+...|++++|.++|++..+.. +.+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~-----------~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~ 84 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRV-----------HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDD 84 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH
Confidence 34556778889999999999999833 234466679999999999999999999999998753 56677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
.+..++.++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.+...+..+..++..
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 78889999999999999999999998874 55666 88899999999999999999999999888788777777777777
Q ss_pred cCChhHHHHHHH----------------------------------------------HHHHC-CCCCchH-HHHH----
Q 037499 169 SRRLEDAWKVFD----------------------------------------------EMLKR-RLQPTLV-TFGT---- 196 (262)
Q Consensus 169 ~g~~~~a~~~~~----------------------------------------------~m~~~-~~~~~~~-~~~~---- 196 (262)
.+..++|++.++ .+.+. ...|+.. .+..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 777665554444 33322 1112211 1111
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.+.++...|++++|+..|+++.+.....|+. ....+..+|...|++++|+.+|+++.+.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 1234567799999999999998752112432 2222567899999999999999998764
No 40
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.4e-14 Score=79.24 Aligned_cols=49 Identities=43% Similarity=0.805 Sum_probs=28.3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (262)
||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.9e-11 Score=94.88 Aligned_cols=235 Identities=13% Similarity=0.039 Sum_probs=187.3
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHH--------------------------
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLII-------------------------- 58 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-------------------------- 58 (262)
+.-.+..+.+.-...|+++|+.+|+.+.++ .+.+ .|..+|..++
T Consensus 262 ~~i~~~~A~~~y~~rDfD~a~s~Feei~kn---------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ET 332 (559)
T KOG1155|consen 262 MYIKTQIAAASYNQRDFDQAESVFEEIRKN---------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPET 332 (559)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccc
Confidence 333455667777899999999999999775 1333 2444544433
Q ss_pred -----HHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 59 -----TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 59 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
+-|+-.++.+.|...|+...+-. +-....|+.+..-|...++...|.+-|+...+.+ |.|-..|-.|.++|.
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 33344477889999999998753 4556788999999999999999999999999987 889999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499 134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
-.+...-|+-.|++.....|.|...|.++..+|.+.++.++|.+.|.+....|-. +...+..+...|-+.++.++|...
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987633 568899999999999999999999
Q ss_pred HHHHHHhc---C-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 214 KEDMMRVY---N-VKP-DAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 214 ~~~~~~~~---~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
|++..+.. | +.| .......|...+.+.+++++|.......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 98876631 2 233 2223334556677778877777654444
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.2e-10 Score=88.85 Aligned_cols=227 Identities=15% Similarity=0.107 Sum_probs=183.6
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (262)
.|+|.+|.++...-.+.+ +.....|..-+.+..+.|+.+.+-+++.+..+.. -.++....-+......
T Consensus 97 eG~~~qAEkl~~rnae~~-----------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-----------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLL 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-----------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHH
Confidence 799999999999875442 2345667777788888999999999999998752 2456666777788888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------------
Q 037499 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------------------------- 153 (262)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------- 153 (262)
..|+.+.|..-.+++.+.+ +.+.........+|.+.|++.....++..+.+.+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998887 77788889999999999999999999988877653
Q ss_pred -----------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------
Q 037499 154 -----------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP--------------------------- 189 (262)
Q Consensus 154 -----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--------------------------- 189 (262)
.++..-.+++.-+.++|+.++|.++.++..+.+..|
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 233334566677778999999999988877654332
Q ss_pred ---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 190 ---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 190 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
++..+.+|...|.+.+.|.+|...|+... ...|+..+|..+..++.+.|+..+|.+..++..-.-.+|+
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 45567788889999999999999999877 4589999999999999999999999999998775544443
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=7.6e-11 Score=95.21 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=166.4
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCN 92 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 92 (262)
....|+++.|.+.+....+. .|+ ...+-.....+.+.|+++.|.+.+.+..+.. |+. .....
T Consensus 94 a~~~g~~~~A~~~l~~~~~~------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~ 158 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIA 158 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHH
Confidence 34689999999999887332 233 3445556788888999999999999987642 443 34444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------------
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------------------- 153 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------- 153 (262)
....+...|+++.|.+.++.+.+.. |.+..++..+...+.+.|++++|.+.+..+.+.+.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5788889999999999999999886 66778899999999999999999998887775432
Q ss_pred ------------------C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH--H-HHHHHHHHhhCCH
Q 037499 154 ------------------P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT--F-GTLIYGLCLELRV 207 (262)
Q Consensus 154 ------------------~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~-~~li~~~~~~g~~ 207 (262)
| +...+..++..+...|+.++|.+++++..+.. ||... + ..........++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 1 44455566677778888999999999888863 33321 1 1111222345778
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+.+.+.++...+...-.|+.....++...|.+.|++++|.+.|+........||
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 888888888876522222225667888999999999999999995444334555
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.50 E-value=8.7e-14 Score=76.98 Aligned_cols=49 Identities=29% Similarity=0.522 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 45
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=5.1e-11 Score=84.51 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 131 (262)
.+...+.-.|.+.|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+.|++..+.. +-+-.+.|....-
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 345556667777777777777777777653 4455667777777777777777777777776654 4455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
+|..|++++|...|+....... .-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 7777777777777777766544 33556777777777777777777777777765322 34455556666677777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
|..+++..... ..++.......|+.-...|+.+.+-++=..+
T Consensus 192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777553 3366666666666666777766665544433
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.49 E-value=1.4e-10 Score=89.49 Aligned_cols=224 Identities=9% Similarity=-0.027 Sum_probs=161.1
Q ss_pred hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97 (262)
Q Consensus 18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (262)
..+..+.++.-+.++..... ....-....|..+...+.+.|++++|+..|++..+.. +.+...|+.+...+
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~ 108 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYL 108 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 34566677777766643210 0111235668888899999999999999999999853 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
...|++++|.+.|++..+.. +-+..+|..+..++...|++++|++.|+......+.+.. .......+...+++++|..
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~ 186 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKE 186 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHH
Confidence 99999999999999999875 556788899999999999999999999999887664442 2222233456788999999
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-----DAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
.|.+..... .|+...+ .+ .....|+...+ +.+..+.+.....+ ....|..+...+.+.|+.++|+..|++
T Consensus 187 ~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 187 NLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 997765432 3332222 22 23345666554 35555543211111 235788999999999999999999999
Q ss_pred HHHcC
Q 037499 253 MVRNK 257 (262)
Q Consensus 253 m~~~g 257 (262)
..+.+
T Consensus 262 Al~~~ 266 (296)
T PRK11189 262 ALANN 266 (296)
T ss_pred HHHhC
Confidence 98754
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.48 E-value=3.1e-10 Score=80.64 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
..+...|.-.|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+-|++.....+.+..+.|.....+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 3446667788889999999999999988876 556678888888999999999999999998888888888888888888
Q ss_pred HhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499 167 VVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 245 (262)
|..|.+++|...|++.... ...--..+|..+.-+..+.|+.+.|...|++..+. .+-...+...+.....+.|+...
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999888875 22223457777877788889999999999888763 23345567777888888888888
Q ss_pred HHHHHHHHHHcCC
Q 037499 246 ALGFKEEMVRNKI 258 (262)
Q Consensus 246 a~~~~~~m~~~g~ 258 (262)
|..++++....|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 8888888766543
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=1.4e-11 Score=99.46 Aligned_cols=243 Identities=13% Similarity=0.085 Sum_probs=177.9
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLL-HYDLIITKLGRAKMFDEVQQILHQLKHDT--- 81 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 81 (262)
.+...|...|..+|+++.|..++++..+.-.. ..| ..|.+. ..+.+...|...+++++|..+|+++....
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k-----~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEK-----TSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-----ccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999987543100 011 123333 33447778899999999999999887531
Q ss_pred -C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 82 -R--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N-VQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 82 -~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
| .+--..+++.|..+|.+.|++++|..++++..+. | ..|.+ ..++.+...+...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 1223557888899999999999999888876431 1 12222 34667778889999999999999866432
Q ss_pred -----CCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC--CC-chHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 152 -----VSP---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL--QP-TLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 152 -----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
+.. -..+++.+...|.+.|++++|.++++...+. +- .+ ....++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 222 2468999999999999999999999998753 11 12 245677888899999999999999887
Q ss_pred HH---HhcCC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 217 MM---RVYNV-KPD-AQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 217 ~~---~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
.. +..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 43 22232 233 4579999999999999999999988875
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.7e-11 Score=96.04 Aligned_cols=220 Identities=14% Similarity=0.037 Sum_probs=174.6
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
.|.++.+|..++.-|.-.|.+.+|.+.|...... .+.=...|-.....|+-.+..+.|+..+....+-
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-----------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl- 375 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-----------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL- 375 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-----------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence 5888999999999999999999999999887332 2223457888999999999999999999887763
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------C
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-------P 154 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~ 154 (262)
++-...-+--+..-|.+.++.+.|.+.|.+..... |-|+...+-+.-.....+.+.+|..+|+....... .
T Consensus 376 -~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 376 -MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred -ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 22222223334556888999999999999988765 66778888888888888999999999987763221 2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
-..+++.+..+|.+.+.+++|+..+++..... +-|..++.++.-.|...|+++.|++.|.+.. .+.|+-.+...++
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELL 529 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHH
Confidence 34568899999999999999999999998873 4588899999999999999999999999887 6789887777777
Q ss_pred HHHHh
Q 037499 235 KGLCA 239 (262)
Q Consensus 235 ~~~~~ 239 (262)
..+..
T Consensus 530 ~~aie 534 (611)
T KOG1173|consen 530 KLAIE 534 (611)
T ss_pred HHHHH
Confidence 65543
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.1e-11 Score=94.76 Aligned_cols=210 Identities=13% Similarity=0.096 Sum_probs=172.9
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 94 (262)
.....|++++|.+.|+....+ ...-+.....+.-.+-..|++++|+..|-.+..- +..+..+...+.
T Consensus 499 ~~f~ngd~dka~~~ykeal~n-----------dasc~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qia 565 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNN-----------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIA 565 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcC-----------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHH
Confidence 344579999999999998543 2222333334455678889999999999988763 456788888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 174 (262)
+.|....+..+|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-.--.-.+-+..+..-+...|....-+++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999888765 467788999999999999999999998776665566788888889999999999999
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHH-HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 175 AWKVFDEMLKRRLQPTLVTFGTLIYGL-CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
+...|++..- +.|+..-|..++..| .+.|++..|..+++...+ .++-|......|++.+...|.
T Consensus 645 ai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 645 AINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 9999998766 689999999888665 467999999999999976 677789999999999888775
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=7e-11 Score=91.15 Aligned_cols=205 Identities=9% Similarity=-0.097 Sum_probs=148.9
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (262)
..|..++..+.+.|+.++|...|++... ..+.+...|+.+...+...|+++.|+..|++..+.. +-+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~-----------l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~ 131 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALA-----------LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTY 131 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 3478888999999999999999999844 445578999999999999999999999999999743 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
..++..+..++...|++++|++.|++..+.. |+..........+...++.++|...|.+......++...+ ....
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~ 206 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVE 206 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHH
Confidence 7788889999999999999999999998864 4332222223334567889999999976554333332222 2333
Q ss_pred HhcCChhHHHHHHHHHHHC---CC--C-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKR---RL--Q-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~---~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 232 (262)
...|+...+ ..+..+.+. .+ . .....|..+...+.+.|++++|+..|++..+. .+||..-+..
T Consensus 207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~--~~~~~~e~~~ 275 (296)
T PRK11189 207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN--NVYNFVEHRY 275 (296)
T ss_pred HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCchHHHHHH
Confidence 345666554 355555432 11 1 12357888899999999999999999999863 3456554444
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=5.6e-10 Score=96.16 Aligned_cols=168 Identities=10% Similarity=0.033 Sum_probs=128.7
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
|..+.+...-+....+.|+++.|++.|++..+. .+.+. ..+ .++..+...|+.++|+..+++....
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p- 97 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKA-----------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS- 97 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-
Confidence 455556667777888999999999999999543 22232 233 7888889999999999999999832
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
-+........+...+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++....+ +...+..
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~ 174 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMT 174 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHH
Confidence 24445555556778999999999999999999876 56677888888999999999999999999987644 3444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
++..+...++..+|++.++++.+..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhC
Confidence 4445545666666999999888763
No 53
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=2.2e-10 Score=88.39 Aligned_cols=208 Identities=13% Similarity=0.195 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
-+..+|..+|.++++-...++|.+++++..+. ..+.+..+||.+|.+-.- ....+++.+|......||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 36789999999999999999999999999987 468889999999876432 2337889999999999999999999
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH-HHHHHHHHHHC--C--CC---C-chHHH
Q 037499 129 LNAMLTCGKIDR----MTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED-AWKVFDEMLKR--R--LQ---P-TLVTF 194 (262)
Q Consensus 129 l~~~~~~g~~~~----a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~--~--~~---~-~~~~~ 194 (262)
+.+..+.|+++. |++++.+|++.|. |...+|..+|..+++.++..+ +..++.++... | .+ | |...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 4667788999999 999999999999999998865 44445554432 2 22 2 44567
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 195 GTLIYGLCLELRVDEALKLKEDMMRVYN---VKPD---AQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
...+..|.+..+.+.|.++-.-+....+ +.|+ ..-|..+....++....+....+|+.|+-+-+-|+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 7788889999999999988766643211 2233 23466777788888889999999999877655554
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.7e-10 Score=89.81 Aligned_cols=242 Identities=10% Similarity=0.004 Sum_probs=163.5
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|+++..+-.=|..+...|+..+-..+=.++ ....+..+.+|.++.--|.-.|+..+|.+.|.+...-+
T Consensus 274 dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~L-----------V~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD 342 (611)
T KOG1173|consen 274 DPFHLPCLPLHIACLYELGKSNKLFLLSHKL-----------VDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD 342 (611)
T ss_pred CCCCcchHHHHHHHHHHhcccchHHHHHHHH-----------HHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 3444444444444555566655555555555 22445566666666666666666677776666665432
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+.-...|-.....|+-.+..++|...|...-+.= +-..--+.-+.--|.+.+.++.|.+.|.+.....|.|+...+-
T Consensus 343 --~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 343 --PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred --ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 1223456666666666666666666665554320 0000111222335667778888888888888887888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC--CC---C-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKR--RL---Q-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~--~~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
+.-.....+.+.+|...|+..... .+ . .-..+++.|..+|.+.+.+++|+..+++.... .+-+..++.++.-
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~ 497 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGY 497 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHH
Confidence 888888899999999999887732 01 1 12456888999999999999999999999863 4558889999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 236 GLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 236 ~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.|...|+++.|.+.|.+.+- +.||
T Consensus 498 iy~llgnld~Aid~fhKaL~--l~p~ 521 (611)
T KOG1173|consen 498 IYHLLGNLDKAIDHFHKALA--LKPD 521 (611)
T ss_pred HHHHhcChHHHHHHHHHHHh--cCCc
Confidence 99999999999999998765 5554
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.3e-10 Score=90.82 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=176.2
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 94 (262)
.+.-.|+.-.|..-|+.... -.+.+...|--+...|....+.++....|.....-+ +-++.+|..-.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~-----------l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRg 401 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIK-----------LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRG 401 (606)
T ss_pred hhhhcCCchhhhhhHHHHHh-----------cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHH
Confidence 34457788888888887743 233344447788889999999999999999998754 55666788778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 174 (262)
..+.-.+++++|..-|++..... +-+...|--+..+..+.+++++++..|++.++..|.-+.+|+.....+...+++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH
Confidence 88888899999999999999876 55677777777788889999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHCCCC-------CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHH
Q 037499 175 AWKVFDEMLKRRLQ-------PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLA 246 (262)
Q Consensus 175 a~~~~~~m~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 246 (262)
|.+.|+..++.... +.+.+-..++..-. .+++..|++++.+..+ +.| ....|..|...-.+.|+.++|
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999998875322 11222223332222 3899999999999984 355 456899999999999999999
Q ss_pred HHHHHHHH
Q 037499 247 LGFKEEMV 254 (262)
Q Consensus 247 ~~~~~~m~ 254 (262)
+++|++..
T Consensus 557 ielFEksa 564 (606)
T KOG0547|consen 557 IELFEKSA 564 (606)
T ss_pred HHHHHHHH
Confidence 99999864
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=7.3e-11 Score=88.02 Aligned_cols=201 Identities=15% Similarity=0.095 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
|..--+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+.++++.|+.+|.+-.+.- +-++....-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhH
Confidence 4445577899999999999999999999875 5788899999999999999999999999988763 45555556677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
+.+-..++.++|.++|+...+..+.+......+...|.-.++++-|++.++++.+.|+. ++..|..+.-+|...+++|-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 88889999999999999999988888888889999999999999999999999999976 78888888888999999999
Q ss_pred HHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 210 ALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
++.-|++.... .-.|+ ..+|..+-...+..|++..|.+.|+-....
T Consensus 377 ~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 377 VLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred hHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 99999998775 44454 456878887888889998888888766543
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=2e-09 Score=90.01 Aligned_cols=61 Identities=23% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
|.-+..+|...|++.+|+.+|..+... ...-+...|..+..+|...|..++|.+.|+..+.
T Consensus 417 ~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 417 YLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344455555666666666666666543 2222345566666666666666666666666554
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=1.1e-09 Score=91.39 Aligned_cols=239 Identities=14% Similarity=0.056 Sum_probs=163.8
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
|+|.+..-|..+.....+.|.+++|.-.|.+.. ...+++...+.--+..|-+.|+...|+..|.++.+.
T Consensus 202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-----------~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAI-----------QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-----------hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 456666666666666667777777777776662 234445555555666666777777777777777664
Q ss_pred CCCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 037499 81 TRVVPE-----EIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--- 151 (262)
Q Consensus 81 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 151 (262)
. +|. .......++.+...++.+.|.+.++..... +-..+...++.++..|.+...++.|......+...
T Consensus 271 ~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e 348 (895)
T KOG2076|consen 271 D--PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE 348 (895)
T ss_pred C--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC
Confidence 2 222 112223445555666667777776665542 11334456677777777777777777666555440
Q ss_pred ----------------------------------------------------------C--C-CChhHHHHHHHHHHhcC
Q 037499 152 ----------------------------------------------------------V--S-PDACSYNILMHGCVVSR 170 (262)
Q Consensus 152 ----------------------------------------------------------~--~-~~~~~~~~l~~~~~~~g 170 (262)
. + .+...|.-+..++...|
T Consensus 349 ~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 349 KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG 428 (895)
T ss_pred CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc
Confidence 0 1 23445567788888999
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (262)
++..|..+|..+.....--+...|..+.++|...|.+++|.+.|+.+... .+-+...--+|...+.+.|+.++|.+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 99999999999998755556789999999999999999999999999863 2334556667778899999999999999
Q ss_pred HHHH
Q 037499 251 EEMV 254 (262)
Q Consensus 251 ~~m~ 254 (262)
..+.
T Consensus 507 ~~~~ 510 (895)
T KOG2076|consen 507 EQII 510 (895)
T ss_pred hccc
Confidence 8865
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.5e-10 Score=97.16 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=91.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR------------ARLLEHALQVFDEM 113 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~ 113 (262)
....++..+..+...+.+...+..|.+-|..+.+.....+|..+...|.+.|.+ .+..++|++.|.+.
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444444432223444444444444432 12345555555555
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchH
Q 037499 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLV 192 (262)
Q Consensus 114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~ 192 (262)
++.. |-|..+-|-+.-+++..|++.+|..+|.++.+.......+|..+.++|...|++..|+++|+...+. ....+..
T Consensus 639 L~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 639 LRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred HhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 5544 4455555555555666666666666666665554445555666666666666666666666554443 3333455
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
+...|.+++.+.|++.+|.+.+.....
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555666666666666655555543
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=6.8e-10 Score=89.93 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=156.0
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|++...|..-+.......++++|..+|.+... ..++...|..-+....-.++.++|++++++..+.
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~------------~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-- 680 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARS------------ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-- 680 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc------------cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--
Confidence 45555566666667777777777777777633 2346666666666666677777777777777763
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
++.-...|..+.+.+.+.++++.|.+.|..-.+. ++..+..|-.+...--+.|..-+|..+++..+...+.+...|...
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 3445566777777777777777777777665544 355666777777777777777888888887777777777888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC-----------------------------CCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRR-----------------------------LQPTLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
|.+-.+.|+.+.|..++.+..+.- +.-|+...-.+...|....+++.|.+.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777776665431 112344444555556666677777777
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 214 KEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 214 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
|.+..+. .| +-.+|..+...+.+.|.-+.-.+++.....
T Consensus 840 f~Ravk~---d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 840 FERAVKK---DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHcc---CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7776642 33 334666666666777766666666665544
No 61
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=3.2e-10 Score=86.51 Aligned_cols=223 Identities=15% Similarity=0.109 Sum_probs=148.2
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
.-+.+++...|+++.++.-...- . .|.......+...+...++-+.++.-+++.........+...
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~-------------~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~ 104 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKS-------------S-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIV 104 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TT-------------S-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH
T ss_pred HHHHHHHHHcCChhHHHHHhccC-------------C-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHH
Confidence 35667777888888766555443 2 455556555555554445556666666555443212234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh--HHHHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC--SYNILMHGCV 167 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~ 167 (262)
.......+...|++++|+++++.. .+.......+.+|.+.++++.|.+.++.|.+....++. ...+++..+.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 444456677789999999888643 35566777889999999999999999999876432222 2233333333
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh-hHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL-SLA 246 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a 246 (262)
-.+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+.... -+-+..+...++-+....|+. +.+
T Consensus 179 g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp TTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred CchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHH
Confidence 345799999999998765 5678889999999999999999999999987653 233566777788777888887 567
Q ss_pred HHHHHHHHH
Q 037499 247 LGFKEEMVR 255 (262)
Q Consensus 247 ~~~~~~m~~ 255 (262)
.+++.++..
T Consensus 256 ~~~l~qL~~ 264 (290)
T PF04733_consen 256 ERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 778887765
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.4e-10 Score=95.11 Aligned_cols=232 Identities=13% Similarity=0.063 Sum_probs=187.2
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..++..+-..++++.|.+.|..+.. -.+--+..|--++......+...+|...++....-. ..++..
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilk-----------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~a 566 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILK-----------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNA 566 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH-----------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHH
Confidence 4567777788999999999999843 334455566666655556688999999999998854 555666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCh
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLT------------CGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
++.+...+.+...+..|.+-|....+.- ..+|..+.-.|.+.|.+ .+..++|+.+|.++....+.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 7777878888899999999887776532 13455555566665543 3467899999999999988898
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 236 (262)
..-|-+.-.++..|++..|..+|.+.++... ....+|..+..+|...|++..|+++|+...+.+.-.-+..+...|.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 8889999999999999999999999998743 355688889999999999999999999999987767788899999999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 037499 237 LCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~ 255 (262)
+.+.|.+.+|.+.+...+.
T Consensus 726 ~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 9999999999998877665
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=4e-10 Score=93.95 Aligned_cols=228 Identities=13% Similarity=0.061 Sum_probs=108.1
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
|+..|+.++|.-|+..|+.+.|- +|..|+.. ..+.+...++.++....+.++.+.+.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~k----------sLpv~e~vf~~lv~sh~~And~Enpk------------ 79 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK----------SLPVREGVFRGLVASHKEANDAENPK------------ 79 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcc----------cccccchhHHHHHhcccccccccCCC------------
Confidence 55588888888899888888887 77777543 33334455555555555555443332
Q ss_pred CccHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----hcCCCC--------------ChhhHHHHHHHHHhcCCHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEH---ALQVFDEMS----SFNVQR--------------TVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~--------------~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
.|.+.+|.+|..+|...||... +.+.+..+. ..|+-. ....-.+.+....-.|.++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666665432 222111111 111100 0000111222222233344444
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 037499 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 222 (262)
+++..+.......+... +++-+.. ......++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+. |
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-g 234 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-G 234 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-C
Confidence 44333322111111111 1221111 11222333332222211356666666666666666666666666666554 6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 037499 223 VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262 (262)
Q Consensus 223 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 262 (262)
++.+..-|..|+-+ .++...+..+++-|.+.||.|++
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCc
Confidence 65555555555532 55555566666666666666653
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=5.8e-09 Score=83.36 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=168.1
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
.+..+.-+..+.+.|++.+|.-.|+... +..+-+...|..|.......++-..|+..+++..+-+ +-
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAV-----------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~ 351 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAV-----------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PT 351 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHH-----------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--Cc
Confidence 3445677888899999999999999983 3556689999999999999999999999999999853 55
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------------------------------------cCCCCChh
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSS------------------------------------------FNVQRTVK 123 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~ 123 (262)
+....-.|.-.|...|.-..|++.++.-+. .+..+|..
T Consensus 352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 677777888778777776677766655432 12224556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
+...|.-.|.-.|++++|...|+......|.|...||.+...++...+.++|+..|++.++....--..-||.-| .|..
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI-S~mN 510 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI-SCMN 510 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh-hhhh
Confidence 667777777778888888888888888888888888888888888888888888888888853222233455444 6788
Q ss_pred hCCHHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 204 ELRVDEALKLKEDMMRVY--------NVKPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
.|.+++|.+.|-...... ...++...|.+|=.++.-.++.|.+.+
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 888888888776654321 111234567766666666666664443
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.3e-08 Score=81.95 Aligned_cols=227 Identities=16% Similarity=0.120 Sum_probs=134.6
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
...++...|++++|++.++.-.. .+.............+.+.|+.++|..+|..+.++. |.+..-|.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~-----------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~ 76 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK-----------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYR 76 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh-----------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH
Confidence 34667889999999999987632 334456667778889999999999999999999863 33444444
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHhh----------------------------------cCCCCChhhHHHHHHHH
Q 037499 92 NVISFYGRA-----RLLEHALQVFDEMSS----------------------------------FNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 92 ~l~~~~~~~-----~~~~~a~~~~~~~~~----------------------------------~~~~~~~~~~~~ll~~~ 132 (262)
.+..+.+-. .+.+...++|+++.. .|+| .+|+.+-..|
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly 153 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLY 153 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 444444222 234555555555533 2211 1333333334
Q ss_pred HhcCCHHHHHHHHHHHHhc---------------CCCChhHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHH
Q 037499 133 LTCGKIDRMTDLFQIMEKY---------------VSPDACSY--NILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTF 194 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~ 194 (262)
....+.+-...++...... .+|+...| .-+...|-..|++++|+.++++.++. +|+ +..|
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely 231 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELY 231 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 3333333333444333211 01333333 44456666777777777777777775 343 4566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
..-.+.+-+.|++.+|.+.++..+.. -.-|...=+-.+..+.++|++++|.+++....+.+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 66667777777777777777777542 122444444555566677777777776666555543
No 66
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2.4e-09 Score=83.50 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=145.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.|+++.|.+.+++....+ .........+.-.+...|++++|++.|-++-..- ..+..+.-.+.+.|....+...|++
T Consensus 503 ngd~dka~~~ykeal~nd--asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNND--ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCc--hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 377888888888877642 2222333334445677889999999887765432 3456677777888888889999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCC
Q 037499 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNV 223 (262)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 223 (262)
++.+.....+.|+.....+...|-+.|+-..|++.+-+--.. .+-+..+...|...|....-+++++.+|++.. -+
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---li 655 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LI 655 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hc
Confidence 998888777788899999999999999999998887665554 55678888888888888888999999999885 57
Q ss_pred CCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHH
Q 037499 224 KPDAQVFASLIKGL-CAVGELSLALGFKEEMVR 255 (262)
Q Consensus 224 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~ 255 (262)
.|+..-|..++..| .+.|++.+|+++++....
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 89999999888655 578999999999998765
No 67
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.26 E-value=3.9e-09 Score=92.02 Aligned_cols=209 Identities=11% Similarity=0.081 Sum_probs=173.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
+-+...|-..|....+.++.+.|.+++++....-++.-. .-+|.++++.-...|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 347788999999999999999999999999874322222 2357777777777788899999999999863 23567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHh
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCL 203 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 203 (262)
|..|...|.+.+.+++|.++++.|.+........|...+..+.+..+-++|.+++.+..+.=.+ -........+..-.+
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8999999999999999999999998876678889999999999999999999999999875211 134455556666778
Q ss_pred hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
.|+.+.+..+|+..... .+-....|+..++.-.+.|+.+.++.+|++.+..++.|
T Consensus 1613 ~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999874 33356689999999999999999999999999988875
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.23 E-value=9.1e-09 Score=76.99 Aligned_cols=188 Identities=9% Similarity=-0.017 Sum_probs=131.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE---IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK- 123 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 123 (262)
......+..++..+...|+++.|...|+++.... +.+. ..+..+..++.+.|++++|...++++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 4567788888889999999999999999988743 3332 466778888999999999999999988754 22222
Q ss_pred --hHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH
Q 037499 124 --SFNTLLNAMLTC--------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT 193 (262)
Q Consensus 124 --~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 193 (262)
++..+..++... |+.++|.+.|+.+....+.+...+..+...... . .... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~------~~~~--------~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----R------NRLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----H------HHHH--------HH
Confidence 455555666554 678888888888887666444444332221110 0 0000 01
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...+...+.+.|++++|...+++..+.+.-.| ....+..+..++.+.|+.++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455668889999999999999887633233 3568888999999999999999998888764
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.22 E-value=2.1e-09 Score=77.93 Aligned_cols=164 Identities=14% Similarity=0.054 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
|... ..+-..+...|+-+....+..+.... .+.+.......+....+.|++..|+..|.+..... ++|..+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 5555 66777888889999999998887653 45666777778999999999999999999998776 88999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
-+|.+.|++++|..-|.+..+..+.++...+.+...+.-.|+++.|..++......+.. |..+-..+.......|++++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 99999999999999999999988888888999999999999999999999999887543 55566667778889999999
Q ss_pred HHHHHHHHH
Q 037499 210 ALKLKEDMM 218 (262)
Q Consensus 210 a~~~~~~~~ 218 (262)
|.++...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 999876554
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.22 E-value=1.3e-08 Score=76.21 Aligned_cols=151 Identities=8% Similarity=-0.074 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCCCh
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGRA--------RLLEHALQVFDEMSSFNVQRTV 122 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 122 (262)
.++..+..++.+.|++++|+..++++.+...-.+. ..++..+..++.+. |++++|.+.|+.+.+.. +-+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~ 149 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSE 149 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCCh
Confidence 46788889999999999999999999875421122 12456666666654 78999999999998764 3333
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYG 200 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~ 200 (262)
..+..+..... .... . ......+...|.+.|++++|...++...+... +.....+..+..+
T Consensus 150 ~~~~a~~~~~~----~~~~------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 150 YAPDAKKRMDY----LRNR------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred hHHHHHHHHHH----HHHH------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 33332221111 0000 0 01123566778899999999999999887632 2235678888899
Q ss_pred HHhhCCHHHHHHHHHHHHHh
Q 037499 201 LCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~~ 220 (262)
+...|++++|..+++.+...
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999888764
No 71
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.21 E-value=1.2e-08 Score=82.87 Aligned_cols=237 Identities=11% Similarity=0.001 Sum_probs=191.9
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
..+.-|...+......||+..|..++....+ ..+.+...|...+....+...+++|..+|.+....
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~-----------~~pnseeiwlaavKle~en~e~eraR~llakar~~--- 647 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFE-----------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--- 647 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---
Confidence 3444566667777788999999999988743 44558889999999999999999999999998864
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
.|+..+|.--++.---.++.++|++++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-.+..+..+..|..+.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 5788888877777777899999999999888762 444567888889999999999999999888877777888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----------------------
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---------------------- 221 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------- 221 (262)
..--+.|++-+|..++++.+..+.. +...|-..|++-.+.|+.+.|..+..+..+.+
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 9999999999999999999887643 77889999999999999999998887776541
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 222 ------NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 222 ------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...-|..+...+...+-...++++|.+.|.+.++.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 12224555566667777788899999999988773
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.20 E-value=2e-08 Score=79.94 Aligned_cols=205 Identities=12% Similarity=-0.003 Sum_probs=132.6
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
+|..+..+..++..+...|+.+.+.+.+....... ....+ ..........+...|++++|.+.+++..+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL---------AARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh---------ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56667777788888888888888766666653321 11112 223333445667778888888888888774
Q ss_pred CCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499 81 TRVVPEEIIFCNVISFYG----RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
.|.+...+.. ...+. ..+....+.+.+..... ..+........+...+...|++++|...+++..+..+.+.
T Consensus 73 --~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~ 148 (355)
T cd05804 73 --YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA 148 (355)
T ss_pred --CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 2444444442 22222 23445555555544211 1122233444556677888888888888888888777777
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCch--HHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTL--VTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7888888888888888888888888776532 1222 2455677778888888888888888753
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.5e-09 Score=83.11 Aligned_cols=195 Identities=10% Similarity=0.059 Sum_probs=158.7
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
+-.+..+|....+.++-.+.|....+ -.+-++.+|..-.+...-.+++++|..=|++...-. +-+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~-----------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--pe~~~ 429 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAED-----------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--PENAY 429 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHh-----------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--hhhhH
Confidence 88899999999999999999999844 344477788888888888899999999999998743 44566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHH--H
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP------DACSY--N 160 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~--~ 160 (262)
.|..+.-+..+.++++++...|++.++. +|..+..|+.....+...+++++|.+.|+......+. ++.++ -
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 7777888888999999999999999876 4777899999999999999999999999988765442 22221 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.++. +.-.+++..|..++++..+.+.+ ....|..|.+.-.+.|+.++|+++|++...
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 22448999999999999987543 567899999999999999999999998654
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=1.3e-08 Score=78.04 Aligned_cols=206 Identities=10% Similarity=0.028 Sum_probs=166.4
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP---FRYNLLHYDLIITKLGRAKMFDEVQQILHQL 77 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 77 (262)
+.|.++........+|.+.|++.....+...+.+.+- +.. ...-..+|..+++-....+..+.-...|++.
T Consensus 182 ~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~------l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 182 MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL------LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC------CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 3567777788889999999999999999999976532 000 0112346777787777777777777788888
Q ss_pred HhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499 78 KHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (262)
... .+-++..-..++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-++..++-.+..+.++.
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 764 466777788889999999999999999999988876665 22233456778888888888888777777789
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+.++...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999987774 789999999999999999999999999887643
No 75
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.19 E-value=2.8e-08 Score=86.92 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=189.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.+...|-.-+......++.++|.++++++...-+ .+.-.--...|-++++.-..-|.-+...++|+++.+.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN------~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN------FREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC------cchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence 467778899999999999999999999999865421 1122223457888888888889999999999999984
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSY 159 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~ 159 (262)
-..-.+|..|...|.+...+++|.++|+.|.+.- ......|...+..+.+..+-+.|.+++.+..+.-+ ......
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 2334568899999999999999999999998763 35678999999999999999999999998887655 345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA--QVFASLIKGL 237 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~ 237 (262)
.-.+..-.+.|+.+.+..+|+....... --...|+.+|..-.++|+.+.+..+|+++... ++.|.. ..|..-+..=
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHH
Confidence 6677777899999999999999998743 35679999999999999999999999999876 766642 3566666555
Q ss_pred HhcCChhHHHHHH
Q 037499 238 CAVGELSLALGFK 250 (262)
Q Consensus 238 ~~~g~~~~a~~~~ 250 (262)
-+.|+-..+..+=
T Consensus 1682 k~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYVK 1694 (1710)
T ss_pred HhcCchhhHHHHH
Confidence 5667755444443
No 76
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=2.8e-09 Score=87.31 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=148.3
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
||-......+...+.+.|-...|+.+|+++ ..|...+.+|...|+-..|..+..+..++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek-- 453 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK-- 453 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--
Confidence 455556678899999999999999999987 35778899999999999999999888874
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+|++..|..+.+......-+++|.++++..... +-..+.....++++++++.+.|+.-.+..+....+|-..
T Consensus 454 -~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~ 525 (777)
T KOG1128|consen 454 -DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL 525 (777)
T ss_pred -CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc
Confidence 688989998888777766777777777654322 111111122235666666666666666555566666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
..+..+.++++.|.+.|....... +.+...||.+-.+|.+.|+-.+|...+.+..+- . .-+-..|...+-.-.+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhccc
Confidence 666666666666666666666542 223456666666666666666666666666553 2 3333445555555566666
Q ss_pred hhHHHHHHHHHHH
Q 037499 243 LSLALGFKEEMVR 255 (262)
Q Consensus 243 ~~~a~~~~~~m~~ 255 (262)
++.|.+.+.++.+
T Consensus 603 ~eda~~A~~rll~ 615 (777)
T KOG1128|consen 603 FEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 77
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=6.3e-08 Score=75.03 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=172.0
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCccHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
..+-.++...++.++|+.+...+.. -.+-+..+|+.-..++...| ++++++..++++.+.. +-+..
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~-----------lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyq 107 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIR-----------LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQ 107 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchH
Confidence 3455666778899999999999843 34446778887777788887 6899999999998853 55666
Q ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 89 IFCNVISFYGRARLL--EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
+|+....++.+.++. ++++.+++++.+.. +-+..+|+....++...|+++++++.+.++.+.++.|...|+.....+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 777666556666653 67899999999876 778899999999999999999999999999999998888898887776
Q ss_pred Hhc---CCh----hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh----CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 167 VVS---RRL----EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE----LRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 167 ~~~---g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
.+. |.. ++.......++... +-|...|+-+...+... ++..+|..++.+..+. -..+......|+.
T Consensus 187 ~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d 263 (320)
T PLN02789 187 TRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLD 263 (320)
T ss_pred HhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHH
Confidence 655 333 46777777777663 33677888777777663 4456788888887652 2446778888899
Q ss_pred HHHhcC------------------ChhHHHHHHHHHH
Q 037499 236 GLCAVG------------------ELSLALGFKEEMV 254 (262)
Q Consensus 236 ~~~~~g------------------~~~~a~~~~~~m~ 254 (262)
.|+... ..++|..++..+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 264 LLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 888632 2367888888873
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-08 Score=78.03 Aligned_cols=235 Identities=15% Similarity=0.091 Sum_probs=141.0
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
.|..-...++..+...|+.++|+..|+..+- ..+.++.......-.+.+.|++++...+...+......
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----------~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ 298 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----------ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY 298 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----------CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc
Confidence 3444456788889999999999999998743 22223333334444455666666655555554432101
Q ss_pred --------------------------------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499 84 --------------------------------VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131 (262)
Q Consensus 84 --------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 131 (262)
+.+...+..-...+...+++++|.-.|+...... |.+...|..|+.+
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 1122222222334445555555555555554432 3445556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH-HHHH-hcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILM-HGCV-VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 208 (262)
|...|++.+|..+-+...+.-+.+..+.+.+. ..+. ...--++|.++++.-.+. .|+ ....+.+...+...|..+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccc
Confidence 66666666655555544444334444433331 1111 112234555555555443 343 335666777788999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+++.++++.... .||....+.|.+.+...+.+++|++.|.....
T Consensus 456 D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 456 DIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999998854 78999999999999999999999998887665
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.15 E-value=3e-08 Score=72.04 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
|..+ ..+-+.+...|+-+....+........ +.+.......+....+.|++.+|+..|++.....++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence 4445 667778888888888888887765432 44555666688888899999999999999998888999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 245 (262)
|.+.|+++.|..-|.+..+... -+...++.+.-.+.-.|+.+.|..++...... -.-|..+-..+.-+....|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999888632 25567777877888899999999999888653 23367777778888889999999
Q ss_pred HHHHHHH
Q 037499 246 ALGFKEE 252 (262)
Q Consensus 246 a~~~~~~ 252 (262)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 8877543
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=1.3e-07 Score=75.29 Aligned_cols=204 Identities=11% Similarity=-0.021 Sum_probs=142.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH-
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT- 127 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 127 (262)
....|..+...+...|+.+.+.+.+....+.....++. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 45667777778888888888877777766543222232 223333455678899999999999988764 445545542
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 128 --LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 128 --ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
........+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22222234556666666655222222344555677788899999999999999999974 335667788888999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 206 RVDEALKLKEDMMRVYNVKPDA--QVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++++|..++++..+.....|+. ..|..+...+...|++++|.+++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999987642222333 3466788889999999999999999854
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.12 E-value=5.2e-08 Score=70.47 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=123.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 137 (262)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 3578888998887555432221 11 12223677788888888888776 7888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHH-HHhcCC--hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVSPDACSYNILMHG-CVVSRR--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 214 (262)
+++|...|++.....+.+...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+.+.|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988899999999887 467777 59999999999997543 6778888888999999999999999
Q ss_pred HHHHHhcCCCCCHHHH
Q 037499 215 EDMMRVYNVKPDAQVF 230 (262)
Q Consensus 215 ~~~~~~~~~~p~~~~~ 230 (262)
+++.+ ..+|+..-+
T Consensus 168 ~~aL~--l~~~~~~r~ 181 (198)
T PRK10370 168 QKVLD--LNSPRVNRT 181 (198)
T ss_pred HHHHh--hCCCCccHH
Confidence 99987 445555444
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=7.9e-08 Score=78.17 Aligned_cols=206 Identities=12% Similarity=0.069 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD----TR-VVPEEII-FCNVISFYGRARLLEHALQVFDEMSSF-----N- 117 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 117 (262)
-..+...+...|...|+++.|..++++..+. .| ..|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666999999999999999999888764 12 1344443 344778899999999999999988642 2
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 037499 118 -VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--PD-ACSYNILMHGCVVSRRLEDAWKVFDEMLKR--- 185 (262)
Q Consensus 118 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--- 185 (262)
.+.-..+++.|..+|.+.|++++|...++...+. +. +. ...++.++..+...++++.|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122356788888999999999988887765432 11 22 234677888899999999999999876642
Q ss_pred CCCCc----hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 186 RLQPT----LVTFGTLIYGLCLELRVDEALKLKEDMMRVY----N-VKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 186 ~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
-+.++ ..+++.|...|...|++++|.++++++.... + ..+. -..++.|...|.+.++..+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 3578999999999999999999999876642 1 1222 34678888999999999999999988643
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=1e-07 Score=81.11 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=123.1
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
++.+...+..|.....+.|++++|+.+++...+.. |.+......+...+.+.+++++|+..+++.....+.+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45668888888999999999999999999998874 55667788888999999999999999999999888888899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|...-|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH
Confidence 999999999999999999999843 234778888888889999999999999998874 445555555443
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.4e-08 Score=77.68 Aligned_cols=190 Identities=16% Similarity=0.092 Sum_probs=133.3
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
..+...+...++-+.++.-++..... ... .+..........+...|++++|++++... .+..
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~----------~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE 132 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLAD----------QAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLE 132 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCT----------S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHh----------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------Cccc
Confidence 33444444435666677666554332 222 23334444445677789999999998643 3466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML----TCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
.....+.+|.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+.+.+|..+|+++.....+++.+.+.+..
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 67778899999999999999999998753 33 33333444433 3457999999999998876688999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH-HHHHHHHHHHHHh
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEALKLKEDMMRV 220 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~ 220 (262)
++...|++++|.+++.+....+. -+..+...++.+....|+. +.+.+++.++...
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999887653 3677888888888888888 6788899888764
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.07 E-value=2.9e-08 Score=71.77 Aligned_cols=157 Identities=8% Similarity=0.122 Sum_probs=126.3
Q ss_pred HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH
Q 037499 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN 92 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
+..|.+.|+++.+....+.+... . . .+...++.++++..++...+.. +.+...|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~-----------~--~---------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~ 78 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP-----------L--H---------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL 78 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc-----------c--c---------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 35677899998876665443111 0 0 1223677788888888888753 788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM-LTCGK--IDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+..+.+..++..+...+.+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 9999999999999999999999886 66788888888864 67777 59999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
|++++|...|+++.+.. +|+..-+.
T Consensus 158 g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred CCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 99999999999999874 44554443
No 86
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.06 E-value=2.7e-08 Score=84.51 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
.+..++..+..|.....+.|.+++|..+++...+. .|.+......++..+.+.+++++|+..+++..... +-+....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 45667999999999999999999999999999985 35567788899999999999999999999999876 6667788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHH
Q 037499 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 198 (262)
..+..++.+.|++++|.++|+++...++.+..++..+..++...|+.++|...|+...+. ..|....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 888899999999999999999999866677899999999999999999999999999876 233445555443
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.2e-07 Score=73.27 Aligned_cols=225 Identities=12% Similarity=0.014 Sum_probs=121.9
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCN 92 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 92 (262)
.+.+..++...|..++-.+.. ...++-|+.....+..++...|+.++|+..|++..-. .|... ....
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~---------~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~ 271 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHD---------NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDL 271 (564)
T ss_pred HHHHHhcccchhhhHHHHHHh---------hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHH
Confidence 344445666666655554433 2356678999999999999999999999999998753 33322 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
....+.+.|+.+....+...+.... ..+...|-.-+..+....+++.|+.+-++.....+.+...+-.-...+...++.
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence 2233345556555555555544322 122223333333333444444444444444444333334443334444444444
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH------------------------------------HHHHHHHH
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD------------------------------------EALKLKED 216 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~------------------------------------~a~~~~~~ 216 (262)
++|.-.|+...... +-+..+|.-|+..|...|++. +|.++++.
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 44444444444321 113344444444444444444 44455444
Q ss_pred HHHhcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 217 MMRVYNVKPDA-QVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 217 ~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
-. .+.|+. ...+.+...|...|..+.++.++++...
T Consensus 430 ~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 430 SL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred hh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 43 335543 3456666778888888889988888765
No 88
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=5.1e-10 Score=55.87 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 222 NVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 222 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666655
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.01 E-value=5.4e-08 Score=66.73 Aligned_cols=95 Identities=6% Similarity=-0.103 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+...|++++|...|+...... +.+..+|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3345556666667777777776666654 455666666666666677777777777766666666666666666666677
Q ss_pred CChhHHHHHHHHHHHC
Q 037499 170 RRLEDAWKVFDEMLKR 185 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~ 185 (262)
|++++|...|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777666664
No 90
>PF12854 PPR_1: PPR repeat
Probab=99.01 E-value=5.9e-10 Score=55.63 Aligned_cols=32 Identities=28% Similarity=0.573 Sum_probs=15.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 117 NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 117 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=2.2e-08 Score=82.23 Aligned_cols=211 Identities=11% Similarity=0.052 Sum_probs=171.2
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
+..|..++..|...|+.++|..+..+..+ .+||+..|..+++......-++.|.++.+....+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le------------k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar----- 486 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE------------KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR----- 486 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc------------CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-----
Confidence 34577889999999999999999988733 4678999999999988888899999998877653
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
.-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|.+.|.......+.+...||++-.+
T Consensus 487 ---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 487 ---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred ---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 12222333345799999999999888765 66788999999999999999999999999998888889999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
|.+.++..+|+..+.+..+.+ .-+...|...+....+.|.+++|++.+.++.......-|..+...++....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999999987 446677777888889999999999999998765333335555544444433
No 92
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.99 E-value=2.6e-08 Score=83.53 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=131.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
.|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-+ ..+.+...++.++.+...+++.+.+. .|...|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 478899999999999999999999999 99988886 58888999999999988888887765 678889
Q ss_pred HHHHHHHHHhcCCHHH---HHHHHHHHH----hcCCCChhHHHH---------------HHHHHHhcCChhHHHHHHHHH
Q 037499 125 FNTLLNAMLTCGKIDR---MTDLFQIME----KYVSPDACSYNI---------------LMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~---a~~~~~~~~----~~~~~~~~~~~~---------------l~~~~~~~g~~~~a~~~~~~m 182 (262)
|+.|+.+|...|+... ..+.+.... ..|......|-. .+.-..-.|-++.+.+++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998654 222222221 122222222211 122222333344444444333
Q ss_pred HHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 183 LKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 183 ~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
-... ..|..+ +++-+.... ....++........+ .|+..+|..++.+-...|+.+.|..++.+|+++|++.+
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 2221 111111 233333222 223344433333223 69999999999999999999999999999999999865
No 93
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=9.9e-07 Score=69.63 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=154.1
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 93 (262)
.--..++++.+|..+|++.. .....+...|...+.+-.+...+..|..+++..... +|--...|.-.
T Consensus 81 qwEesq~e~~RARSv~ERAL-----------dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 81 QWEESQKEIQRARSVFERAL-----------DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHhHHHHHHHHHHHHHHH-----------hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 33345788888899998883 355667778888888888888888888888888763 34444556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
+.+=...|++..|.++|++-.+- .|+...|++.++.-.+...++.|..+++...-.. |+..+|-.....-.++|+..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHH
Confidence 66666778888888888877663 7888888888888888888888888888776432 77777877777777888888
Q ss_pred HHHHHHHHHHHC-CC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH-------------------h------------
Q 037499 174 DAWKVFDEMLKR-RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMR-------------------V------------ 220 (262)
Q Consensus 174 ~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------------------~------------ 220 (262)
.+..+|+...+. |- ..+...+.++...=.++..++.|.-+|+-..+ +
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 888887777654 20 01112222222222233333333333332211 0
Q ss_pred -----------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 221 -----------YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 221 -----------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
...+.|..+|--.+..-...|+.+...++|++.+.. ++|
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 123346667777777778889999999999998763 555
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=5.2e-07 Score=71.29 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
.-....+...|+++.|+..+..+... .|-|++.+......+.+.++..+|.+.++++.... +......-++..+|.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 33334555566677777777766653 35555555666666667777777777777666653 2224555556666677
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 214 (262)
.|++.+|+.+++......+.|+..|..+..+|...|+..++....- ..+...|+++.|+..+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHH
Confidence 7777777777776666666666777777777776666655544332 2344567777777777
Q ss_pred HHHHHhcCCCCCHHHH
Q 037499 215 EDMMRVYNVKPDAQVF 230 (262)
Q Consensus 215 ~~~~~~~~~~p~~~~~ 230 (262)
....+ .++++..+|
T Consensus 449 ~~A~~--~~~~~~~~~ 462 (484)
T COG4783 449 MRASQ--QVKLGFPDW 462 (484)
T ss_pred HHHHH--hccCCcHHH
Confidence 77665 334444443
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=2.1e-06 Score=70.71 Aligned_cols=196 Identities=12% Similarity=0.125 Sum_probs=136.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 135 (262)
-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |.+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 3455778899999999999887653 55667777888999999999999999999999987 55555556666655222
Q ss_pred -----CCHHHHHHHHHHHHhcCC------------CC--------------------hhHHHHHHHHHHhcCChhHHHHH
Q 037499 136 -----GKIDRMTDLFQIMEKYVS------------PD--------------------ACSYNILMHGCVVSRRLEDAWKV 178 (262)
Q Consensus 136 -----g~~~~a~~~~~~~~~~~~------------~~--------------------~~~~~~l~~~~~~~g~~~~a~~~ 178 (262)
...+...++++++....+ .+ +.+|+.+-..|......+-...+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 246677777777654321 01 12233343444433334444455
Q ss_pred HHHHHHC----C----------CCCchH--HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcC
Q 037499 179 FDEMLKR----R----------LQPTLV--TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVG 241 (262)
Q Consensus 179 ~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 241 (262)
+...... + -.|+.. ++..+.+.|...|++++|++++++..+. .|+ +..|..-...+-+.|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCC
Confidence 5444322 1 124443 4455677888999999999999999864 554 668888889999999
Q ss_pred ChhHHHHHHHHHHHcC
Q 037499 242 ELSLALGFKEEMVRNK 257 (262)
Q Consensus 242 ~~~~a~~~~~~m~~~g 257 (262)
++.+|.+.++..++..
T Consensus 243 ~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD 258 (517)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 9999999999887643
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=1e-07 Score=65.33 Aligned_cols=94 Identities=10% Similarity=-0.109 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 204 (262)
+..+...+...|++++|...|+......+.+...|..+..++.+.|++++|...|++..... +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33455566666677777777766666666666666666666667777777777776666653 23555666666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 037499 205 LRVDEALKLKEDMMR 219 (262)
Q Consensus 205 g~~~~a~~~~~~~~~ 219 (262)
|++++|+..|+...+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777776666654
No 97
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.94 E-value=1.4e-07 Score=64.15 Aligned_cols=97 Identities=11% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
.....+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|..++++.....+.+..++..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555556666666666666655544 4455555556666666666666666666655555555555555566666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 037499 168 VSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~ 185 (262)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655553
No 98
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=2.7e-06 Score=67.30 Aligned_cols=235 Identities=14% Similarity=0.085 Sum_probs=178.6
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHH-----HHH---HhcCChhHHH
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL--LHYDLII-----TKL---GRAKMFDEVQ 71 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-----~~~---~~~~~~~~a~ 71 (262)
+|.|-.+|...++.-...|+.++..++|+....+ ++|-. ..|.-.| -++ ....+++.+.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-----------vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-----------VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5677788999999999999999999999999554 34321 1222222 122 2358999999
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHH----HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499 72 QILHQLKHDTRVVPEEIIFCNVISF----YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 147 (262)
++++...+- +|-...|+.-+--. -.++.++..|.+++..... .-|-..+|...|..-.+.+++|....++++
T Consensus 387 ~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 387 QVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999873 55556666554433 4577899999999987764 468888999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
..+.+|.+..+|......-...|+.+.|..+|.-..+.. .......|.+.|..=...|.++.|..+++++.+. .+.
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h 539 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQH 539 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---ccc
Confidence 999999999999999999999999999999999998762 2233556777777778899999999999999876 334
Q ss_pred HHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 037499 227 AQVFASLIKGLC-----AVG-----------ELSLALGFKEEMV 254 (262)
Q Consensus 227 ~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 254 (262)
..+|-.+..--. +.| .+..|..+|++..
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 445555443222 233 4556777777653
No 99
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=2.8e-06 Score=65.99 Aligned_cols=198 Identities=8% Similarity=-0.014 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 131 (262)
++..+-..+...++.++|+.+..++.+.. +-+..+|+.-..++...+ ++++++..++++.+.. +-+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 45555566677889999999999999853 444556666666667777 6899999999999876 5666778877666
Q ss_pred HHhcCCH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh---CC
Q 037499 132 MLTCGKI--DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE---LR 206 (262)
Q Consensus 132 ~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~ 206 (262)
+.+.|+. ++++.+++++.+..+-|..+|+...-++.+.|+++++++.++++++.++. |...|+.....+.+. |+
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 6666763 77899999999988899999999999999999999999999999998654 556666665555444 22
Q ss_pred H----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHc
Q 037499 207 V----DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV----GELSLALGFKEEMVRN 256 (262)
Q Consensus 207 ~----~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~ 256 (262)
. ++.+.+..++... .+-|...|+.+...+... ++..+|.+.+.+..+.
T Consensus 195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 2 4567777666653 234667787777777763 3445677777776553
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=3.2e-07 Score=79.15 Aligned_cols=204 Identities=6% Similarity=0.015 Sum_probs=132.4
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.+...+..|+..+...+++++|.++.+.... ..+-....|..+...+.+.++.+.+..+ .+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~-----------~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~- 92 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK-----------EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS- 92 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-
Confidence 466677788899999899999999999886533 2333445555555577777776666665 33321
Q ss_pred CCCccH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499 82 RVVPEE-------------------IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 82 ~~~~~~-------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
++.+. ..+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +.++|+
T Consensus 93 -~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 -FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred -cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222 456667777777888888888888888776 66777888888888877 888888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------------------CCCCchHHHHHHHHHHHh
Q 037499 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-------------------RLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------------------~~~~~~~~~~~li~~~~~ 203 (262)
+++.+.... +...+++.++..++.++... |..--..++..+-..|..
T Consensus 170 ~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 170 TYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 887776543 22333344444444433332 222223344445566777
Q ss_pred hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
..+|++++.+++.+.+. -+-|.....-++.+|.
T Consensus 236 ~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 236 LEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 77888888888888763 2336667777777776
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=5.8e-06 Score=65.56 Aligned_cols=168 Identities=9% Similarity=-0.046 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
...|+...+...+........-..+-.++....+. -......-....+...|+++.|+..++.+.+.- |-|+..+
T Consensus 269 ~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~ 343 (484)
T COG4783 269 LDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR----GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYL 343 (484)
T ss_pred CCCccHHHHHHHHHHHhccccccchHHHHHHHhCc----cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHH
Confidence 44556666666666555544444343333333321 112222233334557899999999999988763 5566667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
......+.+.++..+|.+.++.+....+.....+-.+..++.+.|++.+|..+++...... +-|+..|..|.++|...|
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 7778899999999999999999998877668888889999999999999999999888773 558889999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 037499 206 RVDEALKLKEDMMR 219 (262)
Q Consensus 206 ~~~~a~~~~~~~~~ 219 (262)
+..++.....+...
T Consensus 423 ~~~~a~~A~AE~~~ 436 (484)
T COG4783 423 NRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHH
Confidence 99888776655543
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.88 E-value=2.9e-07 Score=62.52 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=94.5
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499 109 VFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188 (262)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 188 (262)
.|++..... +.+......+...+...|++++|.+.|+.....++.+...+..+...+.+.|++++|...++...+.+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 455555543 33456677788888999999999999999988888888999999999999999999999999988764 3
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231 (262)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 231 (262)
.+...+..+...+...|++++|...|+...+. .|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI---CGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccccchHH
Confidence 35667777888899999999999999998864 45544433
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=6.4e-07 Score=72.04 Aligned_cols=191 Identities=12% Similarity=0.054 Sum_probs=134.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
...-+.+.|++.+|.-.|+...++. |-+...|..|...-...++-..|+..+++..+.. +.+..+.-.|.-.|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 3446678899999999999998864 6678899999999999999999999999999876 667788888888888888
Q ss_pred CHHHHHHHHHHHHhcC-----------------------------------------C--CChhHHHHHHHHHHhcCChh
Q 037499 137 KIDRMTDLFQIMEKYV-----------------------------------------S--PDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~-----------------------------------------~--~~~~~~~~l~~~~~~~g~~~ 173 (262)
.-..|++.++.-.... + .|+.+...|.-.|--.|+++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888888776653321 1 34455555555555666677
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 037499 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-VFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
+|.+.|+...... +-|...||.|...++...+.++|+..|.+..+ +.|+.+ +...|.-+|...|.+++|...|-+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 7777777666643 22455666666666666666777777776663 355532 344455566666666666666655
Q ss_pred HH
Q 037499 253 MV 254 (262)
Q Consensus 253 m~ 254 (262)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 43
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=3.7e-06 Score=69.98 Aligned_cols=241 Identities=16% Similarity=0.053 Sum_probs=177.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.||.+.+.+.--|+..++.+.|.+..+...+- +...++..|..+.-.+...+++.+|+.+.+......
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l----------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL----------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh----------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 6788889999999999999999999999988554 234589999999999999999999999998887754
Q ss_pred CCC------------------ccHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHHh------
Q 037499 82 RVV------------------PEEIIFCNVISFYGRA-----------------------RLLEHALQVFDEMS------ 114 (262)
Q Consensus 82 ~~~------------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~------ 114 (262)
|.. -...|+..++..+-.. .+..++.+....+.
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 220 0122233333322210 01111111111110
Q ss_pred --hcC---------CCC--C------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499 115 --SFN---------VQR--T------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175 (262)
Q Consensus 115 --~~~---------~~~--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 175 (262)
..| ..| + ...|......+.+.+..++|...+.+.....+.....|......+...|.+++|
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence 001 001 1 123455666778888999999898888887778888888888999999999999
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK--LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
...|......+. .++.+.+++..++.+.|+...|.+ ++..+.+. -+.+...|..+...+.+.|+.++|.+.|...
T Consensus 704 ~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 999999888632 245688889999999999888888 88888863 3457889999999999999999999999887
Q ss_pred HH
Q 037499 254 VR 255 (262)
Q Consensus 254 ~~ 255 (262)
.+
T Consensus 781 ~q 782 (799)
T KOG4162|consen 781 LQ 782 (799)
T ss_pred Hh
Confidence 65
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=3.5e-06 Score=68.85 Aligned_cols=233 Identities=15% Similarity=0.073 Sum_probs=161.8
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|..+.|....+-.+...|+-++|.+..+... +...-+.++|+.+.-.+....++++|++.|.......
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~gl-----------r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~- 105 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGL-----------RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE- 105 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHh-----------ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-
Confidence 3445555666667778888999988888873 3455678899999988888899999999999998753
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYN 160 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 160 (262)
+.|..++.-+.-.-.+.++++.......++.+.. +.....|..+..++.-.|++..|..+++..++... |+...+.
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 6778888888888888899998888888888764 44566788888888899999999999988887763 6666654
Q ss_pred HHH------HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH-H
Q 037499 161 ILM------HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS-L 233 (262)
Q Consensus 161 ~l~------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-l 233 (262)
... ......|.++.|.+.+..-... +......-.+-...+.+.+++++|..++..+... .||..-|.. +
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l 259 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHH
Confidence 332 2334667777777766654432 1111222233445677889999999999988864 565554444 4
Q ss_pred HHHHHhcCChhHHH-HHHHHH
Q 037499 234 IKGLCAVGELSLAL-GFKEEM 253 (262)
Q Consensus 234 ~~~~~~~g~~~~a~-~~~~~m 253 (262)
..++.+.-+.-++. .+|...
T Consensus 260 ~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 260 EKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHHhhhHHHHHHHHHHH
Confidence 44443333323333 444444
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=7.4e-06 Score=60.06 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV- 167 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~- 167 (262)
....-...|...+++++|++...... +......=+..+.+..+++-|...+++|... .+..|.+.+..++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--ded~tLtQLA~awv~ 181 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--DEDATLTQLAQAWVK 181 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHH
Confidence 33344456777888888887776522 2223333345566777788888888888764 44445554544444
Q ss_pred ---hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499 168 ---VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244 (262)
Q Consensus 168 ---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 244 (262)
-.+.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++....+ -.-++.+...++-+-...|...
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCCh
Confidence 345677888888888765 5677778888877888888888888888887764 2334555555554444555543
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.1e-05 Score=58.82 Aligned_cols=192 Identities=12% Similarity=0.042 Sum_probs=147.4
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (262)
..+.++.++++..+..... .....++. ..|..++-+....|+.+.|..+++++..+ ++-+..+-..-...+
T Consensus 25 ~rnseevv~l~~~~~~~~k------~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~l 96 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSK------SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLL 96 (289)
T ss_pred ccCHHHHHHHHHHHHHHhh------hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHH
Confidence 5677888888877754321 11133444 45666777888899999999999999986 444444444444456
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
-..|++++|+++|+.+.+.+ |.|..++---+...-..|+.-+|++-+....+..+.|...|.-+...|...|++++|.-
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 67899999999999999887 77778888778888888998899999999999888999999999999999999999999
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhC---CHHHHHHHHHHHHHh
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLEL---RVDEALKLKEDMMRV 220 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 220 (262)
.++++.-.. +.++..+..+...+.-.| +.+-+.++|.+..+.
T Consensus 176 ClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 176 CLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999863 234555566665555444 566678888888754
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.75 E-value=2.3e-08 Score=50.55 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEMVRNKIEMDA 262 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd~ 262 (262)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888874
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=6.2e-06 Score=60.47 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+......-...|.+.+++++|++...... +......=...+.+..+++.|.+.+++|.+. .+..|.+-|.
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA 176 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLA 176 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHH
Confidence 33344444567888889999988887622 2222333345566778888899999888874 3455666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 130 NAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 130 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++.+ .+...+|.-+|++|.+..+|++.+.+-...++...|++++|..+++....+... ++.+...+|.+-...|
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 66554 456888899999998877788888888888888999999999999988887543 5667777776666666
Q ss_pred CHHH-HHHHHHHHHHh
Q 037499 206 RVDE-ALKLKEDMMRV 220 (262)
Q Consensus 206 ~~~~-a~~~~~~~~~~ 220 (262)
...+ ..+.+.++...
T Consensus 256 kd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKLS 271 (299)
T ss_pred CChHHHHHHHHHHHhc
Confidence 6544 45566666543
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=4e-06 Score=68.53 Aligned_cols=237 Identities=12% Similarity=0.073 Sum_probs=181.8
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
|.....+.=+.-+...+++...+++.+.+ +..++-...+.....-.+...|+-++|......-... -
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~i-----------L~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--d 71 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQI-----------LKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--D 71 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHhCCccchhHHhccchhhcccchHHHHHHHHHHhcc--C
Confidence 33334444444555688888888888888 3455556667777777788889999999998887763 3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
.-+...|+.+.-.+-..+++++|++.|......+ +.|...+.-+.-.=++.|+++..........+..+.....|..++
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5667788988888888899999999999999877 777888888877778889999999998888887777888999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHH------HHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLI------YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 236 (262)
.++.-.|++..|..+++...+.. ..|+...|.... ....+.|..++|.+.+..-... +.-....-.+-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 99999999999999999998874 356666665443 2345678888888887766542 22233333445566
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 037499 237 LCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~~ 256 (262)
+.+.++.++|..++..++..
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhh
Confidence 88999999999999999874
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=2.8e-06 Score=58.40 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch--HHHHHHHHHHHhhCCHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPD---ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL--VTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~ 209 (262)
.++...+...++.+....+.+ ....-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555544422 222233445555556666666666665554322211 122334455555666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
|+..++... +-......+......|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666664432 1122333444555566666666666666554
No 112
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=1.2e-06 Score=69.41 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...-.+++..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++++..+.. +.+......-..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444556677777888999999999888753 553 4457777778888888888888888654 556666666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
.+.+.++++.|+.+.+++....|.+-.+|..|..+|.+.|+++.|+..++.+-
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888889999999988888877778888899999999999999988887764
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=2.8e-05 Score=63.94 Aligned_cols=203 Identities=13% Similarity=0.072 Sum_probs=136.5
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT------ 81 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 81 (262)
.|-.++..|...|+.+.|..+|++...-+ -+.+..-..+|......=.+..+++.|+++++....-+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~-------y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVP-------YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCC-------ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 36788899999999999999999985541 12222335678888888888899999999988775421
Q ss_pred ----CCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 82 ----RVVP------EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 82 ----~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
+.++ +..+|...+..-...|-++....+|+++.+..+ .++...-.....+-.+..++++.++|++-...
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 1111 133455566666677889999999999988764 33433333444455677788999999887776
Q ss_pred CC-CCh-hHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCchHHHHHH--HHHHHhhCCHHHHHHHHHHHHH
Q 037499 152 VS-PDA-CSYNILMHGCVV---SRRLEDAWKVFDEMLKRRLQPTLVTFGTL--IYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 152 ~~-~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.+ |+. ..|+..+.-+.+ .-.++.|..+|++..+ |++|...-+--| ...=-+.|-...|+.++++...
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66 554 356666555543 3457899999999998 565543322222 1222245777788888887644
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=3.1e-06 Score=63.14 Aligned_cols=198 Identities=9% Similarity=0.080 Sum_probs=146.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH-HHHH
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL-LNAM 132 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~ 132 (262)
+.+.+..+.+..++++|++++..-.++. +.+....+.|..+|....++..|-..|+++... .|...-|... ...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 4456666778899999999999888863 447888999999999999999999999999875 4655555543 4667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499 133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 212 (262)
.+.+.+.+|+++...|......-..+...-....-..+++-.+..++++....| +..+.+.......+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 788999999999998875421111111111222336788888888888776443 44455555556678999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 213 LKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 213 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
-|+...+-.|..|- ..|+..+ +..+.|+.+.|+.+..+++++|++-
T Consensus 166 kFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 166 KFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 99999887676654 4566554 4556788999999999999999863
No 115
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.69 E-value=2.2e-06 Score=68.05 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
.....|+..+...++++.|+++|+++.+.. |+ ....++..+...++..+|.+++.+.....+.+......-...+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344567777778889999999999998764 44 44557888888889999999999998877778888888888899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
+.++++.|..+.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999986 344 559999999999999999999888765
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.3e-06 Score=62.41 Aligned_cols=224 Identities=16% Similarity=0.037 Sum_probs=159.7
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
+...+..+.+..+++.|++++....+ ..+.+......+..+|....++..|-..++++... .|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~E-----------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~ 78 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELE-----------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELE 78 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHh-----------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHH
Confidence 56777778899999999999988743 33347788889999999999999999999999874 45554
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 89 IFCN-VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA--MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 89 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
-|.. -...+.+++.+..|+.+...|.+. ++...-..-+.+ ....+++..+..++++.... .+..+.+...-.
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchhe
Confidence 4432 345677889999999999888752 333222222222 34567888888888876532 344455555556
Q ss_pred HHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-------------CH----
Q 037499 166 CVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-------------DA---- 227 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-------------~~---- 227 (262)
..+.|+++.|.+-|+...+- |.. ....|+..+ +..+.|+++.|+++..++.++ |++- |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhccc
Confidence 67999999999999998886 554 467888776 456689999999999998876 4432 11
Q ss_pred -----------HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 228 -----------QVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 228 -----------~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
..++.-...+.+.|+++.|.+-+-+|.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP 268 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMP 268 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCC
Confidence 112222333557888888888777664
No 117
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.68 E-value=3e-05 Score=63.74 Aligned_cols=28 Identities=11% Similarity=-0.087 Sum_probs=24.2
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCC
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPN 35 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 35 (262)
.|.+|+.-|.+.|.+++|.++|+.....
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4788999999999999999999886443
No 118
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.67 E-value=6e-08 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 228 QVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.65 E-value=8.1e-05 Score=56.89 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=170.1
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
...|+..+...|++..|+..|....+ +.+.+..++.--...|...|+-..|+.=+....+. +||-.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve-----------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~ 106 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE-----------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFM 106 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc-----------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHH
Confidence 45678888899999999999999833 54555556666667889999999999999988874 57643
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--Chhh------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 89 -IFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKS------------FNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 89 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.-..-...+.+.|.+++|..-|+..++..-.. ...+ ....+..+..+|+...|++....+.+..+
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 23334567789999999999999998764111 1111 12234455678999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH----
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV---- 229 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---- 229 (262)
.|...+..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...++.. .+.||...
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~ 262 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPF 262 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHH
Confidence 999999999999999999999998888877763 3456666667788889999999999988887 45776542
Q ss_pred HHHH---------HHHHHhcCChhHHHHHHHHHHHc
Q 037499 230 FASL---------IKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 230 ~~~l---------~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
|..| +......++|.++++-.+...+.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 2111 12234556677777776666553
No 120
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=6.8e-05 Score=54.80 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=142.6
Q ss_pred CChhHHHHHHHHHHhcC--C-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499 65 KMFDEVQQILHQLKHDT--R-VVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 140 (262)
.+.++.++++.++.... | ..++.+ .|-.++-+....++.+.|...++.+.+.- +-+..+-..-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 56788888888876543 3 445654 45667778888999999999999988763 3333333333334556899999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
|+++++.+.+.++.|..++-.-+......|+--+|++-+....+. +..|...|.-+...|...|+++.|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 999999999999999999988888888888888888888888876 566999999999999999999999999999984
Q ss_pred cCCCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHHHH
Q 037499 221 YNVKP-DAQVFASLIKGLCAVG---ELSLALGFKEEMVR 255 (262)
Q Consensus 221 ~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 255 (262)
+.| ++..+..+.+.+.-.| +...+..+|.+.++
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344 5556666666554433 56677778877765
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=7.1e-06 Score=56.41 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=47.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKI 138 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~ 138 (262)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........++ ......+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 444555555555554432 222 12222233444455555555555555544331111 11222334444445555
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 180 (262)
++|+..++.... .......+......|.+.|++++|...|+
T Consensus 102 d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555433211 11333344444455555555555555444
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.61 E-value=2e-05 Score=60.11 Aligned_cols=186 Identities=12% Similarity=0.123 Sum_probs=80.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.|+...|+..+..+.+- .+-+...+..-..+|...|.+..|+.-+....+.. ..+..++-.+-..+...|+.+.++.
T Consensus 168 ~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred CCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444444442 23344444444444444444444444444443332 2233333334444444444444444
Q ss_pred HHHHHHhcCCCChhHHH---HH---------HHHHHhcCChhHHHHHHHHHHHCCCCCchHH---HHHHHHHHHhhCCHH
Q 037499 144 LFQIMEKYVSPDACSYN---IL---------MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT---FGTLIYGLCLELRVD 208 (262)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---~l---------~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~ 208 (262)
..++..+.++.....|. .+ +......++|.++.+..+...+......... +..+-.++...|++.
T Consensus 245 ~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 245 EIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence 44444443321111110 00 0111223334444444444443322211111 222334444555666
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 209 EALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+|++...++.+ +.|+ +.++.-=..+|.-...++.|++=|+...+
T Consensus 325 eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 325 EAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66666666653 2443 55555555566666666666666665554
No 123
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.4e-05 Score=64.92 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=137.4
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
=++.+.+.|++++|++....+. ...+.+...+..-+-++.+.++|++|+.+.+.-.. ...+...+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil-----------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~f 83 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKIL-----------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFF 83 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHH-----------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhH
Confidence 3455667899999999999984 35566777888888889999999999966554432 112222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhc
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA--CSYNILMHGCVVS 169 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 169 (262)
.-..+..+.+..++|++.++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.+.++. ..-..++.+-..
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~- 158 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA- 158 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-
Confidence 33455668899999999988322 22334666667788899999999999999977665332 222233222111
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHH---HHHHHhhCCHHHHHHHHHHHHHh----c--CCCC------CH-HHHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTL---IYGLCLELRVDEALKLKEDMMRV----Y--NVKP------DA-QVFASL 233 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~----~--~~~p------~~-~~~~~l 233 (262)
... +.+......| ..+|..+ ...+...|++.+|+++++...+. . +-.- .. ..-.-|
T Consensus 159 ------l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 159 ------LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred ------hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 111 1122222233 2344433 34566789999999999988321 0 0000 11 122334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC
Q 037499 234 IKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
.-++-..|+.++|.+++...++..
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhc
Confidence 456678999999999999988763
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=1.9e-05 Score=68.63 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=141.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----------
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN----------- 117 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------- 117 (262)
.+...|..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++...+..+ .+...-
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 467889999999999999999999999877643 33334444444466666666555544 222211
Q ss_pred -------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---
Q 037499 118 -------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--- 187 (262)
Q Consensus 118 -------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--- 187 (262)
..-+..++..+..+|-+.|+.++|..+|+++.+..+.|+.+.|.+...|+.. ++++|.+++.+....-+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k 183 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK 183 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh
Confidence 1123357778888999999999999999999999999999999999999999 99999999998876411
Q ss_pred CCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 188 QPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 188 ~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+++ ...|..++ .+...+++.-.++.+.+....+..--+.++..+-..|...++++++..+++.+.+.
T Consensus 184 q~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 184 QYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred cchHHHHHHHHHH--hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 000 11122221 12234444555555555544344444566777778899999999999999999873
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.60 E-value=1.7e-05 Score=66.26 Aligned_cols=236 Identities=12% Similarity=0.015 Sum_probs=154.1
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
++..|..|.-++.+.|+++.+.+.|++.. +..--....|+.+...+...|.-..|+.+++.-.....-+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~-----------~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQAL-----------PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 34456777788888999999999998873 3444466788888888888998888888888776542223
Q ss_pred ccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhc--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 037499 85 PEEIIFCNVISFYG-RARLLEHALQVFDEMSSF--N--VQRTVKSFNTLLNAMLTC-----------GKIDRMTDLFQIM 148 (262)
Q Consensus 85 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~ 148 (262)
++...+-..-..|. +.+.+++++.+-.+.... + -......|..+.-+|... ....+++..+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 34444444444444 456677777776666541 1 012334555555555432 2345777788888
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 228 (262)
.+.++.|+.+...+.--|+-.++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....+|.. ..
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~ 548 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HV 548 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hh
Confidence 7777755555555555667788899999999998888666788888888888888899999999988887764432 11
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
....-+..=...++.++++.....+
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHH
Confidence 1111122222355555555554444
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=2.2e-06 Score=53.80 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=6.4
Q ss_pred HHhcCChhHHHHHHHHH
Q 037499 61 LGRAKMFDEVQQILHQL 77 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~ 77 (262)
+...|++++|...+++.
T Consensus 10 ~~~~~~~~~A~~~~~~~ 26 (100)
T cd00189 10 YYKLGDYDEALEYYEKA 26 (100)
T ss_pred HHHHhcHHHHHHHHHHH
Confidence 33333333333333333
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.58 E-value=7.4e-05 Score=60.30 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
+.+|..+++.-.+...+..|..+|.+.++.+..+ ++.++.+++..+| +++..-|.++|+-=.+.+|-.| .--...+
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yl 442 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYL 442 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHH
Confidence 4567778888888889999999999999987777 6778888887766 6888899999988777544333 3334556
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 235 KGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.-+...|+-..+..+|++....++.||
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChh
Confidence 667778888888888888888866654
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.57 E-value=0.00012 Score=62.37 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=148.6
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (262)
....+++.+|+.....+.+. .|..+-..++.+ -...+.|+.++|..+++...... ..|..|...+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk---------~Pn~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---------HPNALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQN 85 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---------CCCcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHH
Confidence 34578888888888887443 122222222222 24567899999998888887643 337888899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC----
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR---- 171 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 171 (262)
+|...++.++|..+|++..+. .|+......+..+|.+.+.+.+-.++--++-+..+.++..+-++++...+.-.
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999999876 46677777788888888887776666656655555555555566655543321
Q ss_pred ------hhHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499 172 ------LEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244 (262)
Q Consensus 172 ------~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 244 (262)
..-|.+.++.+.+.+ .--+..-.-.....+...|++++|..++..-....-..-+...-+.-+..+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 234666667776654 2223333333344556788999999998443332133334444455566677777777
Q ss_pred HHHHHHHHHHHcC
Q 037499 245 LALGFKEEMVRNK 257 (262)
Q Consensus 245 ~a~~~~~~m~~~g 257 (262)
+..++..++...|
T Consensus 244 ~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 244 ELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776654
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.2e-07 Score=47.79 Aligned_cols=33 Identities=39% Similarity=0.776 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 190 (262)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455556666666666666666666655555554
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=6.6e-05 Score=67.44 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=144.0
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC--
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD---TRVV-- 84 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-- 84 (262)
..+...+...|++++|...++....... ..........++..+...+...|+++.|...+++.... .+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~-----~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMAR-----QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 4455666778888888888777643210 00011112234555666777888888888887766542 1111
Q ss_pred c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChh
Q 037499 85 P-EEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC 157 (262)
Q Consensus 85 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~ 157 (262)
+ ....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|.+.++....... ....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 1 22334455566667788888888887765421 111 223444456667778888888888877654311 1111
Q ss_pred HH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cCCCCC
Q 037499 158 SY-----NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRV---YNVKPD 226 (262)
Q Consensus 158 ~~-----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~p~ 226 (262)
.+ ...+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... .+..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11 11224445578888888887665442111111 11345666788889999999999887653 122222
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 227 -AQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 227 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235666677888999999999999888764
No 131
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.56 E-value=8.8e-06 Score=62.38 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
.+|-.+++..-+.+..+.|..+|.+..+...+..+. |...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 356666777777767777777777776543222333 3333333 22245555677777766654 3555666666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.+.+.++.+.|..+|++....-.. ....|...+..-.+.|+++.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777777766655331 2346666676666777777777776666664
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.55 E-value=3.1e-06 Score=67.57 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=80.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
+.+......+++.+....+.+++..++.+.+.... .-..|..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555666666666666677777777776665532 223444577777777777777777777777777777777777
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 240 (262)
.||..+.+.|++..|.++...|+.+ ....+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776665 5555556655555555544
No 133
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=4e-06 Score=52.51 Aligned_cols=96 Identities=15% Similarity=0.226 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
++..+...+...|++++|.+++++..+.. +.+...+..+..++...|++++|.+.++......+.+..++..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 35667788889999999999999998764 44557788889999999999999999999988777777889999999999
Q ss_pred cCChhHHHHHHHHHHHC
Q 037499 169 SRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~ 185 (262)
.|+++.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999988764
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=1.1e-05 Score=53.33 Aligned_cols=104 Identities=10% Similarity=-0.009 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLL 129 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll 129 (262)
++..++..+.+.|++++|.+.|..+.+...- +.....+..+..++.+.|+++.|.+.|+.+.... .+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555555566666666666555543100 1112344445555556666666666665555432 011123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
.++.+.|+.++|...++.+....+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 555555555555555555555444333
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.52 E-value=2.4e-07 Score=46.39 Aligned_cols=32 Identities=31% Similarity=0.678 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=2e-05 Score=53.78 Aligned_cols=94 Identities=5% Similarity=-0.026 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+...+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|.......+.|+..+-.+..++...|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 334444445555555555555555443 3344445555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHHC
Q 037499 171 RLEDAWKVFDEMLKR 185 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~ 185 (262)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555443
No 137
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=6.6e-06 Score=62.87 Aligned_cols=205 Identities=13% Similarity=0.147 Sum_probs=137.6
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----HHHHhcCChhHHHHHHHHHHhc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLII-----TKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
|..-..|+--|.+++++++|..+.+.+. +..|.......+. +-........-|.+.|+..-+.
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~------------PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S 352 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLD------------PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES 352 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcC------------CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence 3444567778889999999999999983 3334333322222 2222223455566666655443
Q ss_pred CCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH
Q 037499 81 TRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY 159 (262)
Q Consensus 81 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (262)
+..-| ..--..+.+++.-..+++.++-+++.+...-...|...+ .+.++++..|.+.+|+++|-.+......|..+|
T Consensus 353 -a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y 430 (557)
T KOG3785|consen 353 -ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILY 430 (557)
T ss_pred -ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence 33322 222345566666677899999999988876544444444 478999999999999999988876555666666
Q ss_pred H-HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH-HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 037499 160 N-ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF-GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVF 230 (262)
Q Consensus 160 ~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 230 (262)
. .+.++|.+.+.++.|++++-.+... .+..+. ..+.+-|.+.+.+--|.+.|+.+.. ..|++.-|
T Consensus 431 ~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 431 KSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCcccc
Confidence 5 4578899999999999987665442 233433 3445678899999999999998864 45655443
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.47 E-value=2e-05 Score=51.99 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHH
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRT---VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMH 164 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 164 (262)
..++..+.+.|++++|.+.|..+.+.. +.+ ...+..+..++.+.|++++|...|+.+....+. ....+..+..
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444444455555555554444321 111 123333444444444444444444444433221 1233444444
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 037499 165 GCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~ 185 (262)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444444444444444444443
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.46 E-value=7e-06 Score=70.37 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
.+.|..|+..|+...|..+|.+.|+...+ -...+...+......|++..+++.|..+.-...+......
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-----------LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFE-----------LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 44566777777777777777777777633 2334667777777778888888777777333332211111
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
-..-|....-.|.+.++..+|...|+...+.. |-|...|..+..+|.++|++..|+++|.+.....|.+...---....
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM 639 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence 12223334445667777777777777777665 55677777788888888888888888877766555444333333444
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 037499 166 CVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~ 184 (262)
-+..|.+.++...+.....
T Consensus 640 ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4567777777777766554
No 140
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.45 E-value=1.5e-05 Score=63.36 Aligned_cols=93 Identities=5% Similarity=-0.038 Sum_probs=47.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 137 (262)
...+...|+++.|++.|.+..+.. +.+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 344444555555555555555432 3344445555555555555555555555555443 3344455555555555555
Q ss_pred HHHHHHHHHHHHhcCC
Q 037499 138 IDRMTDLFQIMEKYVS 153 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~ 153 (262)
+++|+..|+......+
T Consensus 86 ~~eA~~~~~~al~l~P 101 (356)
T PLN03088 86 YQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5555555555554444
No 141
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.45 E-value=8.2e-06 Score=62.54 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
.+|..+++..-+.+..+.|.++|.+..+.+ ..+..+|-.....-.. .++.+.|.++|+...+..+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 468889999999999999999999998654 4455666666666444 56777799999999998889999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
.+.++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~---~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL---FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH---TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---hhhhhHHHHHHH
Confidence 9999999999999999876 33333 58999999999999999999999999875 444333444443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.45 E-value=5.2e-06 Score=66.33 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=73.5
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY 159 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 159 (262)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+++++++..=..-|. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555555666666666666666666666543 1112233455666667777777777766666666666 677777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE 204 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 204 (262)
+.++..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777666666666655555555555555544443
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=3.3e-05 Score=52.72 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 210 (262)
.+...|++++|..+|+.+....+.+..-|..+..++-..|++++|+..|......++ .|+..+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 334445555555555555444444444455555555555555555555555444432 2344444444444555555555
Q ss_pred HHHHHHHHHh
Q 037499 211 LKLKEDMMRV 220 (262)
Q Consensus 211 ~~~~~~~~~~ 220 (262)
.+.|+.....
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.43 E-value=5.4e-05 Score=53.68 Aligned_cols=92 Identities=7% Similarity=-0.013 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++.....+.+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44677778888888999999999988876532221 3577888888888999999999988888776666777777788
Q ss_pred HHHhcCChhHHHHH
Q 037499 165 GCVVSRRLEDAWKV 178 (262)
Q Consensus 165 ~~~~~g~~~~a~~~ 178 (262)
.+...|+...+..-
T Consensus 115 ~~~~~g~~~~a~~~ 128 (172)
T PRK02603 115 IYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHcCChHhHhhC
Confidence 88777775554433
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.42 E-value=3.2e-05 Score=54.84 Aligned_cols=97 Identities=10% Similarity=0.033 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
.......+..+...+...|++++|+..|++..+...-++ ....+..+..++.+.|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 334667788899999999999999999999986421122 24678899999999999999999999998864 4456777
Q ss_pred HHHHHHHHhcCCHHHHHHH
Q 037499 126 NTLLNAMLTCGKIDRMTDL 144 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~ 144 (262)
..+..++...|+...+..-
T Consensus 110 ~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHHHcCChHhHhhC
Confidence 7788888888875554433
No 146
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.42 E-value=0.00048 Score=62.02 Aligned_cols=231 Identities=15% Similarity=0.019 Sum_probs=145.8
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Cc--cH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-----VP--EE 87 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~--~~ 87 (262)
.+...|+++.+...++.+... ....+..........+...|+++++...+........- .+ ..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~----------~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~ 452 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE----------VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA 452 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH----------HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH
Confidence 344567777777776665211 01112223344555667789999999999887553110 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--Chh
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----SP--DAC 157 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~--~~~ 157 (262)
.....+...+...|++++|...+++....--..+ ....+.+...+...|++++|...+++..... .+ ...
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 2223344556688999999999998765311112 1244556667788999999999998876432 21 223
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CCC--CH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQ--P-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VKP--DA 227 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~p--~~ 227 (262)
+...+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+...... ..+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 4566677888999999999998886652 211 1 123344555667778999999999988755311 112 23
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
..+..+...+...|+.++|.+.+.+...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566678889999999998888754
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.42 E-value=2.3e-05 Score=62.24 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=89.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
....+...|+++.|++.|++..+.. +.+...|..+..+|...|++++|+..+++.....+.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3556678899999999999999876 667788999999999999999999999999998888889999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
++|...|++..+.+ |+.......+..
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l~~ 112 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 99999999999863 444444444433
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.42 E-value=1.5e-05 Score=56.26 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
....+..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+..++......+....++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35556667777777788888888887776543111 2246777777777777777777777777765555555555555
Q ss_pred HHHH
Q 037499 164 HGCV 167 (262)
Q Consensus 164 ~~~~ 167 (262)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.42 E-value=1.5e-06 Score=53.73 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=41.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|++++++ .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666666666665421111333444456666666666666666665 2221 1222333344556666666666666
Q ss_pred HHHH
Q 037499 144 LFQI 147 (262)
Q Consensus 144 ~~~~ 147 (262)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.37 E-value=4.5e-07 Score=44.27 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777664
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.36 E-value=0.00048 Score=51.64 Aligned_cols=185 Identities=10% Similarity=-0.019 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF---CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (262)
+...+......+.+.|++++|++.|+.+.... +-+.... -.++.++.+.+++++|...+++..+..-.....-|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 55555566677788899999999999998753 3333332 456778889999999999999888763111122333
Q ss_pred HHHHHHHh--cC---------------C---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 127 TLLNAMLT--CG---------------K---IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 127 ~ll~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
..+.+.+. .+ + ..+|+..|+.+.+.-| ...-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--------------~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--------------NSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--------------CChhHHHHHHHHHHHHHH-
Confidence 33333321 11 1 1234444444444322 222334444444444332
Q ss_pred CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 187 LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 187 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
.-..-+ .+.+.|.+.|.+..|+.-++.+.+.+.-.| .......++.+|...|..++|..+...+.
T Consensus 174 --la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111122 455678889999999999999887654333 44567778889999999999988776654
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0001 Score=63.83 Aligned_cols=209 Identities=12% Similarity=0.053 Sum_probs=125.6
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
.|..|..++.+-.+.|.+.+|++-|-+. .|+..|..++....+.|.|++-.+.+...++. .-.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika----------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA----------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VRE 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc----------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcC
Confidence 4566888888888888888888887666 16777888888888888888888888777664 334
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
|.. =+.||-+|++.++..+.++++ .-|+......+.+-|...|.++.|.-+|..+.. |..+..
T Consensus 1166 ~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN--------~a~La~ 1228 (1666)
T KOG0985|consen 1166 PYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN--------FAKLAS 1228 (1666)
T ss_pred ccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh--------HHHHHH
Confidence 444 356778888888876655443 135665666666666666666666666554432 455555
Q ss_pred HHHhcCChhHHHHHHHHHH------------------------HCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 165 GCVVSRRLEDAWKVFDEML------------------------KRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~------------------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+...|+++.|...-++.- -.++.....-..-++..|-..|-+++.+.+++...
T Consensus 1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L-- 1306 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL-- 1306 (1666)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--
Confidence 5555555555544433221 11112223334455666666666666666665544
Q ss_pred cCCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499 221 YNVK-PDAQVFASLIKGLCAVGELSLALGFKE 251 (262)
Q Consensus 221 ~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (262)
|+. .....|+-|.-.|.+- +.++..+.++
T Consensus 1307 -GLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1307 -GLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred -chhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 332 2334455555555544 3444444443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=1.9e-06 Score=53.20 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037499 101 RLLEHALQVFDEMSSFNVQ-RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 179 (262)
|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|..+++. .+.++.+......+..++.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444555555554443210 1222233344444455555555555444 2111122222223344444444444444444
Q ss_pred H
Q 037499 180 D 180 (262)
Q Consensus 180 ~ 180 (262)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 3
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=6.6e-05 Score=57.61 Aligned_cols=199 Identities=12% Similarity=0.068 Sum_probs=132.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH-----HhcCCHHHHHHHHHHHhhcCCCCCh-hhHHH
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY-----GRARLLEHALQVFDEMSSFNVQRTV-KSFNT 127 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 127 (262)
-..++--|.+.+++.+|..+.+++.. ..|-..+...+..+- .......-|.+.|+-.-..+...|. .--.+
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 33455577888999999988877642 345444433333221 1122345566666655555544443 34566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-HHHHHHHhhCC
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-TLIYGLCLELR 206 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~ 206 (262)
+..++.-..++++++..+..++.-...|...-..+..+++..|++.+|+++|-++....++ |..+|. .|.++|.+.++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 7777778888999999998888766655555556888999999999999999877665555 455554 55678889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 207 VDEALKLKEDMMRVYNVKPDAQV-FASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
++.|+.++-.+. .+.+..+ ...+..-|.+.+.+--|-..|+.+...+-.|
T Consensus 444 P~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 444 PQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred chHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 999988876552 2233333 3344567888888888888888887654433
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0004 Score=56.78 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA 131 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 131 (262)
....+=++.+...+++++|.+...++.. ..+.+...+..-+-+..+.+.++.|+++.+.-... ..+...+.--..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence 3444556778888999999999999997 34667778888888999999999999655433211 1111111122344
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH-HHhhCCHHHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG-LCLELRVDEA 210 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a 210 (262)
..+.++.++|+..++... ..+..+...-...+-+.|++++|+.+|+.+.+.+.. .+..-+++ +...+-.-.+
T Consensus 89 ~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhhH
Confidence 557899999999998332 244556666677888999999999999999887432 22222221 1111111111
Q ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 211 LKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
. +.+.. ...|. ...+......+...|++.+|+++++...
T Consensus 162 ~-~~q~v----~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 162 Q-LLQSV----PEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred H-HHHhc----cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1 22222 22332 2223333445678999999999999883
No 156
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0004 Score=56.27 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLF 145 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~ 145 (262)
.+.....++++.....+.|+. +|...++.-.+..-+..|..+|.+..+.+..+ .+.++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 667777777777655455554 57788888889999999999999999887666 67788888877664 6778899999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+--.+....++.--...+..+...++-..+..+|++....+..|+ ..+|..+|..=..-|+...+.++-+++...
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 887766556667777888999999999999999999998865554 468999999888999999999998887664
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.29 E-value=3e-05 Score=49.31 Aligned_cols=79 Identities=9% Similarity=0.286 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCchHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHhcCCCCCHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLEL--------RVDEALKLKEDMMRVYNVKPDAQVF 230 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~ 230 (262)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+.+.+++.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3445555666788888888888888777 777888888777766542 344556777777766 788888888
Q ss_pred HHHHHHHHh
Q 037499 231 ASLIKGLCA 239 (262)
Q Consensus 231 ~~l~~~~~~ 239 (262)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 158
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00032 Score=56.62 Aligned_cols=195 Identities=12% Similarity=0.019 Sum_probs=128.9
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..+++...+..++..|++.+...... . -+..-++....++...|.+.++...-....+.. - -...-
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el-----------~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-r-e~rad 293 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALEL-----------A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-R-ELRAD 293 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhH-----------h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-H-HHHHH
Confidence 46788888999999999999887443 2 466667778888999988888777766655542 1 11122
Q ss_pred HH-------HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH-------------------------HHHHHHHHhcCC
Q 037499 90 FC-------NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF-------------------------NTLLNAMLTCGK 137 (262)
Q Consensus 90 ~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~ll~~~~~~g~ 137 (262)
|+ .+..+|.+.++++.++++|.+.......|+...- ..-.+.+.+.|+
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence 22 2444667778899999999887654434432211 112344556777
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
+..|++.|.++.+..|.|...|....-+|.+.|.+..|+.-.+...+.. ++....|..=..++....+++.|.+.|++.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877777777777778888778888888877777777766652 122333443344445556777777777776
Q ss_pred HH
Q 037499 218 MR 219 (262)
Q Consensus 218 ~~ 219 (262)
.+
T Consensus 453 le 454 (539)
T KOG0548|consen 453 LE 454 (539)
T ss_pred Hh
Confidence 64
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.6e-06 Score=42.22 Aligned_cols=28 Identities=43% Similarity=0.703 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=0.00019 Score=47.24 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVS 169 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 169 (262)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.+++......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344444555555555555554443322 122333344444455555555555444433221 222222223344444
Q ss_pred CChhHHHHHHHH
Q 037499 170 RRLEDAWKVFDE 181 (262)
Q Consensus 170 g~~~~a~~~~~~ 181 (262)
|+.++|+..+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 555554444433
No 161
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=0.00034 Score=60.58 Aligned_cols=218 Identities=13% Similarity=0.052 Sum_probs=149.1
Q ss_pred ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 037499 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA 100 (262)
Q Consensus 21 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (262)
+...|+..|=+..+ -...=...|..|...|....+..+|.+.|+..-+-+ .-+......+...|++.
T Consensus 473 ~~~~al~ali~alr-----------ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 473 NSALALHALIRALR-----------LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEE 539 (1238)
T ss_pred hHHHHHHHHHHHHh-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhcc
Confidence 35566666655422 223345678889999998889999999999888753 45566778888999999
Q ss_pred CCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499 101 RLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 178 (262)
.+++.|..+.-..-+.. +.- ...|.-..-.|.+.++..+|..-|+......|.|...|..+..+|...|++..|.++
T Consensus 540 ~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv 618 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV 618 (1238)
T ss_pred ccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh
Confidence 99999998843332221 111 122333444567788999999999999998889999999999999999999999999
Q ss_pred HHHHHHCCCCCchHHHHHH--HHHHHhhCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499 179 FDEMLKRRLQPTLVTFGTL--IYGLCLELRVDEALKLKEDMMRVYN-----VKPDAQVFASLIKGLCAVGELSLALGFKE 251 (262)
Q Consensus 179 ~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (262)
|.+.... .|+ .+|... ...-+..|.+.+|...+..+...+. ..--..++-.+...+...|-..+|.++++
T Consensus 619 F~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~e 695 (1238)
T KOG1127|consen 619 FTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFE 695 (1238)
T ss_pred hhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9988875 443 233322 2235678999999988887765421 11123344444455555555556666665
Q ss_pred HHHH
Q 037499 252 EMVR 255 (262)
Q Consensus 252 ~m~~ 255 (262)
+-++
T Consensus 696 ksie 699 (1238)
T KOG1127|consen 696 KSIE 699 (1238)
T ss_pred HHHH
Confidence 5443
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.0007 Score=47.40 Aligned_cols=133 Identities=11% Similarity=0.016 Sum_probs=89.8
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYN 160 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 160 (262)
..|+...-..|..+....|+..+|...|++...--+..|......+.++....+++..|...++.+-+..+ .++.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35666666677777888888888888888777655556666777777777778888888888877776655 5566667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.+.+.+...|.+..|+..|+.....- |+...-......+.+.|+.+++..-+..+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 77777888888888888888877753 33333222333445666666554433333
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=0.00014 Score=51.30 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
....|..+...+...|++++|+..|+.......-++ ...++..+..++...|++++|++.+++..... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 567788889999999999999999999976421111 24578899999999999999999999998764 4445566666
Q ss_pred HHHHH-------hcCCHHHHHHHH
Q 037499 129 LNAML-------TCGKIDRMTDLF 145 (262)
Q Consensus 129 l~~~~-------~~g~~~~a~~~~ 145 (262)
...+. ..|++++|+..+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH
Confidence 66666 556655444443
No 164
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.00011 Score=62.47 Aligned_cols=216 Identities=11% Similarity=0.092 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
...|..+++.+.+..+.+-|.-.+..|...++.. ........++ ..=....-...+.|.+++|..+|.+.++
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-AlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-ALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-HHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3568999999999999999998888885432200 0000000111 2222344455667889999999988876
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----------hcCC--
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME----------KYVS-- 153 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------~~~~-- 153 (262)
|..|=+.|-..|.+++|.++-+.=-...+ ..||.....-+...++.+.|++.|++.. ...+
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 23344556677888888887665443322 3456666666666777777777776531 1111
Q ss_pred --------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499 154 --------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225 (262)
Q Consensus 154 --------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p 225 (262)
.|...|.-........|+.+.|+.+|...++. -.+++..|-.|+.++|-++-++- -
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~es-------g 965 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEES-------G 965 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhc-------c
Confidence 34455555566666778888888887765542 22333444444444444443221 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 226 DAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
|......|.+.|-..|++.+|..+|-+
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 223333444445555555555444443
No 165
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.19 E-value=8.4e-05 Score=62.38 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=33.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 137 (262)
+.+......|..|+.+++.+..+. ....-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 334444445555555555444321 112223444444555555555554443221 12333444555555
Q ss_pred HHHHHHHHH
Q 037499 138 IDRMTDLFQ 146 (262)
Q Consensus 138 ~~~a~~~~~ 146 (262)
|+.|.++-+
T Consensus 807 w~da~kla~ 815 (1636)
T KOG3616|consen 807 WEDAFKLAE 815 (1636)
T ss_pred HHHHHHHHH
Confidence 555544433
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.18 E-value=0.00036 Score=58.12 Aligned_cols=141 Identities=9% Similarity=0.058 Sum_probs=91.1
Q ss_pred CCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRAR-----LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------GKIDRMTDLFQIME 149 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~ 149 (262)
.+.+...|...+++..... +...|..+|++..+.. |-....|..+..++... ++...+.+..+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4556677777776644322 3668888888888764 33344555544433221 12334444444433
Q ss_pred hc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499 150 KY--VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227 (262)
Q Consensus 150 ~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 227 (262)
.. .+.+...|.++...+...|++++|...+++....+ |+...|..+...+...|+.++|...+++.... .|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---RPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC
Confidence 32 33556777777777777888888888888888864 57778888888888888888888888888744 4544
Q ss_pred HH
Q 037499 228 QV 229 (262)
Q Consensus 228 ~~ 229 (262)
.+
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 44
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.18 E-value=0.00076 Score=51.96 Aligned_cols=200 Identities=12% Similarity=0.066 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCCh
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRTV 122 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ 122 (262)
...|......|...+++++|.+.|.+...-. +-+. -...|.....+|.+. ++++|.+.+++... .| .++.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 3456677888889999999999998775421 1111 233455666666554 99999999987653 45 3333
Q ss_pred --hhHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----
Q 037499 123 --KSFNTLLNAMLTC-GKIDRMTDLFQIMEKY----VS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ----- 188 (262)
Q Consensus 123 --~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----- 188 (262)
..+..+...|... |++++|++.|++..+. +. .-..++..+...+.+.|++++|.++|++....-..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 4677788888888 9999999999887553 22 22456678889999999999999999998875322
Q ss_pred CchH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHhc--CChhHHHHHHHH
Q 037499 189 PTLV-TFGTLIYGLCLELRVDEALKLKEDMMRVY-NVKPD--AQVFASLIKGLCAV--GELSLALGFKEE 252 (262)
Q Consensus 189 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~--g~~~~a~~~~~~ 252 (262)
.+.. .|...+-++...||...|.+.+++..... ++..+ ......|+.+|-.. ..++.++.-|+.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 2222 22233335666899999999999986431 22223 34566777777543 345555554443
No 168
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.15 E-value=0.00012 Score=46.61 Aligned_cols=80 Identities=15% Similarity=0.291 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhcCCCCChhh
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRAR--------LLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
-...|..+...+++...-.+|+.+++. |+ .|+..+|+.++.+..+.. ++-..+.+|+.|...+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666668888888888888775 67 778888888887766532 24456677778877778888888
Q ss_pred HHHHHHHHHh
Q 037499 125 FNTLLNAMLT 134 (262)
Q Consensus 125 ~~~ll~~~~~ 134 (262)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.15 E-value=0.00047 Score=57.45 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=101.3
Q ss_pred CCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--------hhHHHHHHHHHH
Q 037499 117 NVQRTVKSFNTLLNAMLTC-----GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--------LEDAWKVFDEML 183 (262)
Q Consensus 117 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~m~ 183 (262)
+.+.+...|...+.+.... +....|..+|++..+..+.+...|..+..++..... +..+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3466778999998875442 237799999999999888777777766555543322 233444444433
Q ss_pred HC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 184 KR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 184 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.. ....+...|..+.-.....|++++|...+++.... .|+...|..+...|...|+.++|.+.+++....
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 12335567777766667789999999999999864 688889999999999999999999999998763
No 170
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00061 Score=59.35 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=92.1
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.++......+-+++|..+|+...- +....+.++. .-+..++|.+.-+... .+.+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~---------------n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vW 1107 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDM---------------NVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVW 1107 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcc---------------cHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHH
Confidence 445555566667777777766511 2333333332 1244555555444332 24457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhc
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVS 169 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 169 (262)
+.+..+-.+.|.+.+|++-|-+. .|+..|...++...+.|.|++-.+.+...++... |... +.+|-+|++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 77777777777777777665432 2455677777777788888877777776665444 4333 4566777777
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 214 (262)
++..+.++++. .||......+..-|...|.++.|.-+|
T Consensus 1180 ~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1180 NRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred chHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 77665554432 234444444444444444444444333
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=7e-05 Score=56.06 Aligned_cols=101 Identities=11% Similarity=0.124 Sum_probs=69.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 175 (262)
-+.+.+++.+|+..|.+.++.. +.|.+-|..-..+|++.|.++.|++-.+.....++....+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456677777777777777764 455566666677777777777777777777776666677777777777777777777
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHH
Q 037499 176 WKVFDEMLKRRLQPTLVTFGTLIY 199 (262)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~ 199 (262)
.+.|++..+ +.|+-.+|..=+.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 777777666 3455555554443
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00013 Score=54.68 Aligned_cols=131 Identities=16% Similarity=0.113 Sum_probs=100.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
=..-+.+.++|.+|+..|.+..+- .+-|+..|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccC
Confidence 345566779999999999999984 36678888899999999999999999999998876 556789999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCc
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE---DAWKVFDEMLKRRLQPT 190 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~ 190 (262)
++++|++.|++..+..+.+...+..|=.+--+.+... .+..-++.....|..|+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd 220 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD 220 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence 9999999999999877766655555554444444444 33334443334444344
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=0.0012 Score=56.44 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
.|......+.+.|...|++.+|..+|.+..
T Consensus 965 gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345556667777777777777777776543
No 174
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0016 Score=48.25 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH-----
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL----- 128 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 128 (262)
.+.++.++...+.+.-.+..+.+..+. .-+.++.....|++.-.+.|+.+.|..+|++..+..-..+..+.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555555556666666666666654 23445555566666666666666666666655443223333333222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
...|.-+.++..|...+.+....++.|+...|.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223334455555666665555555555555555444445556666666666666554
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=3.8e-05 Score=45.32 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR-LLEHALQVFDEM 113 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~ 113 (262)
+|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444443321 223333333444444443 344444444333
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=3.7e-05 Score=44.75 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
.+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|..+|+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444321 2233444444444444444444444444443
No 177
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.06 E-value=0.00027 Score=59.55 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
+.+...++.|.+|+.+++.+.... .-..-|..+.+-|...|+++.|.++|-+.. .++-.|.+|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 344445555666666655555432 122234445555555666666655554322 2344455555555555
Q ss_pred HHHHHHHH
Q 037499 174 DAWKVFDE 181 (262)
Q Consensus 174 ~a~~~~~~ 181 (262)
.|.++-.+
T Consensus 809 da~kla~e 816 (1636)
T KOG3616|consen 809 DAFKLAEE 816 (1636)
T ss_pred HHHHHHHH
Confidence 55555433
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0024 Score=47.92 Aligned_cols=66 Identities=6% Similarity=-0.075 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF---NTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
...+-.....+.+.|++++|.+.|+++.... +-+..+. -.+..++.+.+++++|...+++..+..|
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3334445556677899999999999998753 3233332 4456788899999999999999988877
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.05 E-value=2.7e-05 Score=45.77 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=21.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.|++++|+++|+++....+.+...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=0.0011 Score=43.70 Aligned_cols=108 Identities=8% Similarity=-0.054 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHH
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNT 127 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 127 (262)
...+..++-..|+.++|+.+|++.... |.... ...+..+.+.+...|++++|+.+|++..... |+ ......
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f 80 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF 80 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH
Confidence 344667888899999999999999985 55544 4467778899999999999999999988652 33 223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
+..++...|+.++|++.+-.... ++..-|..-|..|.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la---~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA---ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44577889999999999876654 33335555555554
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.02 E-value=3.4e-05 Score=45.38 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=32.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
.+.|++++|+++|+++.... |-+..++..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566666666666666542 445556666666666666666666666666654
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0012 Score=50.90 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC--hh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSS----FNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEK----YVSPD--AC 157 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~--~~ 157 (262)
.|......|-..+++++|.+.|.+..+ .+-+.. ...|.....+|.+. ++++|.+.+++... .|.++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345556666777777777777776532 221111 12344444555444 88888888776643 23322 34
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHHHHC----CC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCH
Q 037499 158 SYNILMHGCVVS-RRLEDAWKVFDEMLKR----RL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDA 227 (262)
Q Consensus 158 ~~~~l~~~~~~~-g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~ 227 (262)
.+..+...|... |+++.|.+.|++..+. |. ..-..++..+...+.+.|++++|.++|+++....- ...+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 677788888888 9999999999988753 21 11134566778889999999999999999876421 11222
Q ss_pred H-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 228 Q-VFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 228 ~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
. .|...+-++...|+...|...+++....
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 3334455777889999999999988653
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00093 Score=50.38 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=72.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
+-|...|-.|...|...|+.+.|...|.+..+..++++..+..+..++.... .-.++..+|+++...+. -|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 5567778888888888888888888888887777777777776666655443 24567778888777642 2556666
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 666777788888888888888875
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.00 E-value=0.00016 Score=51.85 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHH
Q 037499 119 QRTVKSFNTLLNAMLT-----CGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCV 167 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~ 167 (262)
..+..+|..+++.|.+ .|..+=....+..|.+-|. .|..+|+.|++.+=
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 3455566666666543 2445555555555555555 56666666666554
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.98 E-value=5.5e-05 Score=44.03 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 181 (262)
.|++++|.+.|+.+.+..+.+...+..+..++...|++++|...|++
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.0057 Score=48.92 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
+|.+..+|..|+.-+..+|..++..++++++ ..+++.-..+|...++.-...+++..+..+|.+....
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~-----------~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQL-----------SSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHh-----------cCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 5778889999999999999999999999999 4577777788988888888888999999999888774
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.96 E-value=0.0095 Score=51.43 Aligned_cols=191 Identities=11% Similarity=0.083 Sum_probs=130.7
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 94 (262)
.+.+.|+.++|..+++..... ...|..+...+-.+|.+.++.++|..+|+..... .|+......+.
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~-----------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~---~P~eell~~lF 117 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGL-----------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK---YPSEELLYHLF 117 (932)
T ss_pred HHHHhcCchhHHHHHhhhccC-----------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---CCcHHHHHHHH
Confidence 455899999999999988442 2238999999999999999999999999999975 47788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHHHHhcC-C-CChhHHHHH
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG----------KIDRMTDLFQIMEKYV-S-PDACSYNIL 162 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~a~~~~~~~~~~~-~-~~~~~~~~l 162 (262)
.+|.+.+.+.+-.++--++-+. ++-+...+=++++.+.+.- -..-|.+.++.+.+.+ . .+..-....
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 9999998887655555555442 2333333333334433321 1234556666665544 3 333333344
Q ss_pred HHHHHhcCChhHHHHHHHH-HHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 163 MHGCVVSRRLEDAWKVFDE-MLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.......|.+++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 4555678899999999943 333333334455556677788889999998888888875
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=7.1e-05 Score=44.13 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIM 148 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~ 148 (262)
+|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444432 223334444444444444 344444444433
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.87 E-value=0.00085 Score=50.82 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD---ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLI 198 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li 198 (262)
.|...+..+.+.|++++|...|+.+....+.+ ...+..+..+|...|++++|...|+.+.+.-. ......+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45555555556677777777777777665522 35666777777777777777777777775411 11233444455
Q ss_pred HHHHhhCCHHHHHHHHHHHHHh
Q 037499 199 YGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..+...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777777777777777764
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.0012 Score=50.05 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASL 233 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 233 (262)
..|...+....+.|++++|...|+.+.+...... ...+-.+...|...|++++|...|+.+.+.+...| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555778999999999999998632211 35677788899999999999999999987633222 34456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 037499 234 IKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
..++...|+.++|..+|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888999999999999999874
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.84 E-value=0.0056 Score=44.70 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNT 127 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 127 (262)
+...+......+...|++.+|++.|+.+.....- +-.....-.++.++.+.|+++.|...++++.+.- |-+. .-+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHH
Confidence 4455666777888899999999999999875321 2234556678889999999999999999988753 2221 22222
Q ss_pred HHHHHHhcC-------------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH
Q 037499 128 LLNAMLTCG-------------KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194 (262)
Q Consensus 128 ll~~~~~~g-------------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (262)
.+.+.+... ...+|... +..++.-|=...-..+|...+..+... .-..-+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~ 145 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH
Confidence 222222111 11223333 344444444555555665555555442 111122
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 037499 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 247 (262)
.+...|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.+.
T Consensus 146 -~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 -YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2567788999999999999999887432222 245677888999999877543
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0031 Score=47.64 Aligned_cols=102 Identities=9% Similarity=0.011 Sum_probs=88.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCChhHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEKYVSPDACSYN 160 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 160 (262)
+-|...|-.|...|...|+.+.|...|....+.. +++...+..+..++..+. ...++..+|+++...++.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5678889999999999999999999999998875 677777877777665443 467899999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
-+...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999973
No 193
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.78 E-value=0.00075 Score=48.54 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCC
Q 037499 138 IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRR 171 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 171 (262)
.+-|++++++|+..|. ||..++..++..+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4455566666666555 666666666665554443
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.78 E-value=0.00087 Score=44.54 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=47.3
Q ss_pred CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239 (262)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 239 (262)
...|+..+..+++.+|+..|++..|.++++...+.++++.+..+|..|++-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999988889999999875443
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.002 Score=47.01 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH-
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE- 87 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 87 (262)
....+..+...|++++|.+.|+.+...- +.-+.-......++.++.+.|+++.|...+++..+...-.|..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRY--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 4566778889999999999999996541 2223345667788999999999999999999998864222222
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499 88 IIFCNVISFYGRA-----------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 88 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
..+-.+..++... +...+|... +..++.-|=.+....+|...+..+... -.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la 141 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR---LA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HH
Confidence 1222222222111 112233333 444455555556666666655555431 11
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLELRVDEAL 211 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~ 211 (262)
..--.+...|.+.|.+..|..-++.+.+. +.+........++.+|.+.|..+.+.
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 12234677788999999999999998886 22222345667778888888877543
No 196
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.014 Score=47.58 Aligned_cols=180 Identities=8% Similarity=-0.017 Sum_probs=128.8
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLI-------ITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
++....++...|.+.+....-....+.+. -...-|+.+ ..++.+.++++.++..|.+.....
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-----------e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGR-----------ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhH-----------HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 34556677777777776666655433211 122233333 335556788899999988876642
Q ss_pred CCCccHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 82 RVVPEEII-------------------------FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 82 ~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
..|+... ...-.+.+.+.|++..|++.|.++++.. |-|...|.....+|.+.|
T Consensus 329 -Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 329 -RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 2333221 1112456778899999999999999987 778899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
.+..|++-.+...+..++....|..=..++....++++|.+.|++..+.+ |+..-+.--+.-|..
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 99999999988888878888888888888888899999999999999864 555544444444444
No 197
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.75 E-value=0.013 Score=46.44 Aligned_cols=186 Identities=13% Similarity=0.110 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHh---cCCHHH
Q 037499 69 EVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFN---VQRTVKSFNTLLNAMLT---CGKIDR 140 (262)
Q Consensus 69 ~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~ 140 (262)
+..+.+..+..+-+ -..+..+...++-+|-...+++..+++.+.+...- +.-+..+-....-++.+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 33444445554321 11234445566667999999999999999998741 12223333344556667 899999
Q ss_pred HHHHHHH-HHhcCCCChhHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH--
Q 037499 141 MTDLFQI-MEKYVSPDACSYNILMHGCVV---------SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD-- 208 (262)
Q Consensus 141 a~~~~~~-~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-- 208 (262)
|+.++.. +.....+++.++..+...|.. ....++|...|.+.-+. .||...=-.++..+...|...
T Consensus 201 Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 201 ALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccc
Confidence 9999999 555555999999998888753 22467788888877664 355433222333333333211
Q ss_pred --HHHHHH---HHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 209 --EALKLK---EDMMRVYN---VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 209 --~a~~~~---~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+..++- ..+....| -..+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222222 22221213 2245667788899999999999999999999875
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0069 Score=42.62 Aligned_cols=148 Identities=16% Similarity=0.055 Sum_probs=109.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 174 (262)
+..+.=+++...+-..+-.+ ..|++..--.|..++.+.|+..+|...|++...... .|......+..+....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33344455444433322222 368888888899999999999999999999987666 888899999999999999999
Q ss_pred HHHHHHHHHHCCC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 175 AWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 175 a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
|...++++.+... .-++.+...+.+.+...|++.+|...|+..... .|+...-......+.++|+.+++..
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 9999999988632 112335566778899999999999999999864 5665544444455678887666554
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.73 E-value=0.00036 Score=47.98 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 126 NTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 182 (262)
..++..+...|++++|..+.+.+....|.+...|..+|.+|...|+...|.++|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555544
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00043 Score=41.23 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.|.+.+++++|.++++.+....+.+...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.69 E-value=0.00053 Score=40.83 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.|.+.+++++|+++++.+...+ |.+...+.....++.+.|++++|.+.|+...+..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 3445555555555555555543 34444555555555555555555555555554433
No 202
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.68 E-value=0.0057 Score=40.34 Aligned_cols=140 Identities=9% Similarity=0.133 Sum_probs=73.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
.-.|.+++..++..+.... .+..-+|-++--....-+-+-..++++.+-+. .|... +|++.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki--FDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI--FDISK----------CGNLKRVIE 77 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG--S-GGG-----------S-THHHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCchh----------hcchHHHHH
Confidence 3457777777777777653 23444444444444444444444444444332 33332 233333333
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
.+-.+- .+...+...+.....+|+-+.-.+++..+.+ .-.+++.....+..+|.+.|+..++.+++.+..+.|
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 222211 1344555666777788888888888877764 346677777778888888888888888888888877
Q ss_pred CC
Q 037499 258 IE 259 (262)
Q Consensus 258 ~~ 259 (262)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 63
No 203
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.66 E-value=0.0041 Score=50.81 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
....+.++..+.+.|..+.|+++-..-..+ .....+.|+++.|.++.++. .+...|..|..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~ 355 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGD 355 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHH
Confidence 444666666777777777776664332221 33444667776666554332 24557777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 210 (262)
...+.|+++-|.+.|.+... |..++-.|.-.|+.++-.++.+.....| -++....++...|+.++.
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 77777777777777777654 5666666777777777666666666554 234444455556777776
Q ss_pred HHHHHHH
Q 037499 211 LKLKEDM 217 (262)
Q Consensus 211 ~~~~~~~ 217 (262)
.+++.+.
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6666543
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.61 E-value=0.02 Score=44.78 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
+.+.-+.-+...|+...|.++-.+.+ .|+...|...+.+++..++|++-..+... +-++.-|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 34555666778888888888766653 49999999999999999999887776432 1246888999999999
Q ss_pred hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (262)
.|+..+|.+++.++. +..-+..|.+.|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 999999998887632 244456677888877776653
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.006 Score=45.30 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=103.7
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCc
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT----RVVP 85 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~ 85 (262)
..++..+...|.+.-.+++++.+... ..+-++.....+++...+.|+.+.|...|+...+.. ++.-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~----------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY----------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh----------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch
Confidence 45667777889999999999998653 335577888899999999999999999999776542 2333
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
..-+..+....|.-++++..|...|.+....+ +.+....|.-.-+..-.|+..+|++.++.|....|
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33344445556777889999999999998776 66777777777777788999999999999988655
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.0019 Score=44.42 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+..+|+++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445555566666666666666666554 555566666666666666666666666555
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.57 E-value=0.021 Score=43.93 Aligned_cols=229 Identities=15% Similarity=0.116 Sum_probs=136.6
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHhcC-ChhHHHHHHHHHHhc----C---C
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-----LHYDLIITKLGRAK-MFDEVQQILHQLKHD----T---R 82 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~---~ 82 (262)
..++|+++.|..++.+..... ....|+. ..+..+.......+ +++.|...+++..+- . .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~--------~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLL--------NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHH--------hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 467899999999999985531 0222222 12333334444556 888888877766542 1 1
Q ss_pred CCcc-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499 83 VVPE-----EIIFCNVISFYGRARLLE---HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154 (262)
Q Consensus 83 ~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (262)
..|+ ..++..++.+|...+..+ +|.++++.+.... +-...++..-+..+.+.++.+++.+++.+|......
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~ 153 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH 153 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc
Confidence 2233 346777888888877654 5666666675443 333556666678888899999999999999887654
Q ss_pred ChhHHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCCchH-HHHHH-HHH---HHhh------CCHHHHHHHHHHHHHh
Q 037499 155 DACSYNILMHGC---VVSRRLEDAWKVFDEMLKRRLQPTLV-TFGTL-IYG---LCLE------LRVDEALKLKEDMMRV 220 (262)
Q Consensus 155 ~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i~~---~~~~------g~~~~a~~~~~~~~~~ 220 (262)
....+..++..+ ... ....+...+..+....+.|... ....+ +.. ..+. .+++....+++.+.+.
T Consensus 154 ~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~ 232 (278)
T PF08631_consen 154 SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHS 232 (278)
T ss_pred ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHH
Confidence 445555555555 333 3455666666666554555443 21111 111 1121 1255566666655554
Q ss_pred cCCCCCHHHHH---HHH----HHHHhcCChhHHHHHHHHHH
Q 037499 221 YNVKPDAQVFA---SLI----KGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 221 ~~~~p~~~~~~---~l~----~~~~~~g~~~~a~~~~~~m~ 254 (262)
.+.+.+..+-. +++ ..+.+.++++.|.++|+-..
T Consensus 233 ~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 233 LGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44444544422 222 34567899999999998544
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.54 E-value=0.0091 Score=41.24 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
..-+...|++++|..+|.-+.-.+ +.+..-|..|..++-..+++++|+..|...-.....|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334456788888888888777655 4455556667777777788888888887776665666666667777788888888
Q ss_pred HHHHHHHHHHH
Q 037499 174 DAWKVFDEMLK 184 (262)
Q Consensus 174 ~a~~~~~~m~~ 184 (262)
.|+..|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888877776
No 209
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0057 Score=48.11 Aligned_cols=96 Identities=11% Similarity=0.010 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH-HHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV-TFGTLIYGL 201 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~ 201 (262)
.+++.+..++.+.+++.+|++.-.+.....+.|....-.-..++...|+++.|+..|+.+.+. .|+-. +-+.++.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 356666677777777777777777777777777777777777777777777777777777764 33333 333343333
Q ss_pred HhhCCHH-HHHHHHHHHHHh
Q 037499 202 CLELRVD-EALKLKEDMMRV 220 (262)
Q Consensus 202 ~~~g~~~-~a~~~~~~~~~~ 220 (262)
.+..+.. ...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 3333333 335666666553
No 210
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.0046 Score=52.06 Aligned_cols=30 Identities=17% Similarity=0.001 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNP 32 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 32 (262)
.|.|..|..|+......-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 355555666655555555555555555555
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.45 E-value=0.024 Score=47.01 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=108.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChh------hHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVK------SFNTLLNAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
++...+-.|+-+.+++.+.+..+.+--..+. .|...+..++. ....+.|.+++..+...-|.+....-.-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4455566789999999998876643222222 34444444433 4568899999999988654444444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK-GLC 238 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~-~~~ 238 (262)
.+.+...|++++|.+.|++..... .+.....+--+...+.-.++|++|.+.|.++.+. -..+..+|..+.. ++.
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 778889999999999999766421 1223344445566788899999999999999874 2345555555554 445
Q ss_pred hcCCh-------hHHHHHHHHHHH
Q 037499 239 AVGEL-------SLALGFKEEMVR 255 (262)
Q Consensus 239 ~~g~~-------~~a~~~~~~m~~ 255 (262)
..|+. ++|.++|.+...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 67777 888888887654
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.44 E-value=0.0039 Score=41.48 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh-
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHD--------------TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS- 114 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 114 (262)
|..++..++.++++.|+.+....+++..-.- ....|+..+..+++.+|+..+++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567778888888888888888887655321 1233445555555555555555555555555443
Q ss_pred hcCCCCChhhHHHHHH
Q 037499 115 SFNVQRTVKSFNTLLN 130 (262)
Q Consensus 115 ~~~~~~~~~~~~~ll~ 130 (262)
..+++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2234444445555544
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.44 E-value=0.0014 Score=39.58 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VK---PD-AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+|+.+...|...|++++|+..|++..+... .. |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3555666666666666666666666543211 11 11 34556666666677777777766666543
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.44 E-value=0.016 Score=48.64 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN-----VISFYGRARLLEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (262)
+..|+... +...++-.|++.+|-++|.+--... .-...|+. ..+-+...|..++-..+.++-.+ ...
T Consensus 630 ge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr 701 (1081)
T KOG1538|consen 630 GETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WAR 701 (1081)
T ss_pred CCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--Hhh
Confidence 44455543 4455666777777777776543210 01111111 22333344443333333222111 001
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHH----------HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499 121 TVKSFNTLLNAMLTCGKIDRMTDLFQ----------IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190 (262)
Q Consensus 121 ~~~~~~~ll~~~~~~g~~~~a~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 190 (262)
+..-=......+...|+.++|..+.- ...+....+..+...+...+.+...+.-|-++|..|-+.
T Consensus 702 ~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----- 776 (1081)
T KOG1538|consen 702 NIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----- 776 (1081)
T ss_pred hcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence 11111223445556677666665431 112222255566666666667777888888888877543
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ-----------VFASLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
..+++.....++|++|..+-++.. ...|++. -|.-.-++|.+.|+..+|.++++++....
T Consensus 777 ----ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 777 ----KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ----HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 246667778889999888887765 3345432 23445567888898889998888876543
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.42 E-value=0.0013 Score=39.76 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEM 113 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (262)
+++.+..+|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.42 E-value=0.017 Score=46.64 Aligned_cols=68 Identities=6% Similarity=-0.170 Sum_probs=59.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
..+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|.++..+|...|+.++|++.+++..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34557889999999999999999999999998874 3553 45899999999999999999999999875
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.41 E-value=0.012 Score=47.50 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=70.4
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL-LHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
+|.++..+..++.+|.+.|++++|+..|+...+. .+..+.. .+|+.+..+|...|++++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667778999999999999999999999997442 1221111 46999999999999999999999999874
Q ss_pred CCCCccHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCC
Q 037499 81 TRVVPEEIIFCNVIS--FYGRARLLEHALQVFDEMSSFNV 118 (262)
Q Consensus 81 ~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 118 (262)
. .+ .|..+.. .+...++.....++++.+.+.|.
T Consensus 142 s--n~---~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 142 Y--NL---KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred c--ch---hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11 1221111 01122233456666666666663
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.41 E-value=0.037 Score=45.92 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=109.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-----HHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-----IFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFN 126 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (262)
.++....=.|+-+..++.+.+..+..++.-... .|+..+..+.. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 334444456999999999998877554443322 34444443333 45678999999999986 57766665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHH-H
Q 037499 127 TL-LNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIY-G 200 (262)
Q Consensus 127 ~l-l~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~ 200 (262)
.. .+.+...|+.++|++.|+....... .....+--+.-.+.-.++|++|.+.|..+.+.. ..+..+|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 54 4567788999999999997653221 334445566777888999999999999999863 334445544433 3
Q ss_pred HHhhCCH-------HHHHHHHHHHHH
Q 037499 201 LCLELRV-------DEALKLKEDMMR 219 (262)
Q Consensus 201 ~~~~g~~-------~~a~~~~~~~~~ 219 (262)
+...|+. ++|.++|.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4456777 888888887644
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.021 Score=44.70 Aligned_cols=110 Identities=10% Similarity=0.013 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... .-++..|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHH
Confidence 45556677778899888888877765 68899999999999999999987775432 2456889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999998872 1245667788999999998775444
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.32 E-value=0.054 Score=42.81 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=108.9
Q ss_pred hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97 (262)
Q Consensus 18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (262)
-.|+++.|.+-|+.|...+ +.-..-...|.-...+.|..+.|.+.-+..... -+--.+.+...+...
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-----------EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r 198 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-----------ETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEAR 198 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-----------HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHH
Confidence 4677777777777774321 111122223333444556777777766666553 233455666677777
Q ss_pred HhcCCHHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499 98 GRARLLEHALQVFDEMSSFN-VQRTVK--SFNTLLNAMLT---CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 171 (262)
+..|+++.|+++++.-+... +.+++. .-..|+.+-.. .-+...|...-.+..+..+.-...-.....++.+.|+
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~ 278 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN 278 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc
Confidence 77777777777776544321 122211 11111111110 1122233333222222222111122333455666666
Q ss_pred hhHHHHHHHHHHHCCCCCch-------------------------------HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 172 LEDAWKVFDEMLKRRLQPTL-------------------------------VTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~-------------------------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..++-.+++.+-+...+|+. .....+..+....|++..|..--+...
T Consensus 279 ~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~-- 356 (531)
T COG3898 279 LRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA-- 356 (531)
T ss_pred hhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh--
Confidence 66666666666665444432 222223333334444444444443333
Q ss_pred cCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHc
Q 037499 221 YNVKPDAQVFASLIKGLCA-VGELSLALGFKEEMVRN 256 (262)
Q Consensus 221 ~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 256 (262)
...|....|..|.+.-.. .|+-.++.+++.+.++.
T Consensus 357 -r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 -REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 335666666666665443 47777777777766654
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.0078 Score=44.96 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNT 127 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 127 (262)
.|+.-+ .+.+.|++..|...|....+. .|-+ ...+..|..++...|+++.|..+|..+.+.- .+--+.+.-.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 555555 455566688888888877764 2322 3345667778888888888888887776531 1112355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
+..+..+.|+.++|..+|+++.+.-|
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 77777778888888888888777655
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.28 E-value=0.04 Score=44.32 Aligned_cols=145 Identities=15% Similarity=0.213 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFN-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
.+|...++.-.+..-++.|..+|-++.+.| +.+++.++++++.-++ .|+..-|..+|+.-....+.++.--+..+..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345666777777778888888888888877 5677778888887665 46667788888765554444444446667777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
...++-+.|..+|+..... +..+ ..+|..+|..-..-|+...+..+=+++... .|...+......-|
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHH
Confidence 7888888888888855543 2222 457888888777888888888777777643 45444444444333
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.035 Score=44.05 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=90.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhH----------HHHH
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACS----------YNIL 162 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~----------~~~l 162 (262)
.++...|++++|.+.--..++.. +.+....-.-..++-..++.+.|..-|++....++ .+..+ |..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34455677777776666555543 22332222222334456677777777777666554 12211 1222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH---HHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKR---RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV---FASLIKG 236 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~ 236 (262)
.+-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.-.+...+ .|... |..-..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c 330 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-----IDSSYIKALLRRANC 330 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHH
Confidence 23345778888888888887764 3345555666666667777888888877776653 23322 2222345
Q ss_pred HHhcCChhHHHHHHHHHHHc
Q 037499 237 LCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~~ 256 (262)
+...++|++|.+-++...+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56677778887777776553
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.0094 Score=44.55 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=38.5
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChh
Q 037499 168 VSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELS 244 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 244 (262)
+.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.++-.|- +..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555555444321 111223333444455555555555555554444333332 234444444444555555
Q ss_pred HHHHHHHHHHH
Q 037499 245 LALGFKEEMVR 255 (262)
Q Consensus 245 ~a~~~~~~m~~ 255 (262)
+|...|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.023 Score=43.90 Aligned_cols=153 Identities=7% Similarity=-0.079 Sum_probs=109.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHhcCCHH
Q 037499 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF---NVQRTVKSFNTLLNAMLTCGKID 139 (262)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 139 (262)
..|++.+|-..++++.++ .|.|...+...=.+|.-.|+.+.-...++++... ++|........+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356777777788888874 5778878887888888889998888888888754 22222333444455667889999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR---LQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
+|++.-++..+.++.|.-...+....+...|++.++.++..+-...- .-.-...|-...-.+...+.++.|+.+|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999999888888888888888888888899999888876644321 111122333334455667899999998876
Q ss_pred H
Q 037499 217 M 217 (262)
Q Consensus 217 ~ 217 (262)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.02 Score=45.16 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.+++.+..+|.+.+++..|++.-++....+ ++|....-.=..++...|+++.|...|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344555555555556655555555555543 23444444444555555666666666655553
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=97.17 E-value=0.038 Score=38.24 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=75.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
..-+...|++++|..+|+-+.--++.+..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456789999999999999888888888899999999999999999999998877643 24444555677899999999
Q ss_pred HHHHHHHHHHH
Q 037499 209 EALKLKEDMMR 219 (262)
Q Consensus 209 ~a~~~~~~~~~ 219 (262)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.13 E-value=0.038 Score=37.33 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 97 YGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
..+.|++++|.+.|+.+...- -+-...+-..++.+|.+.+++++|...+++..+..|
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 335566666666665555431 011233444455555556666666666555555544
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.13 Score=44.12 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--- 81 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 81 (262)
...++..+++-....|+++.|..+++.-..... .-+.-.+..-+...+.-+.+.|+.+....++-.+....
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~------qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGE------QVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccc------hhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 446777888888899999999999987644321 11111244445667777888888888887776665531
Q ss_pred -------CCCccHHHHHHHHHH--------HHhcCCHHHHHHHH--HHHh----hcCCCCC-------------------
Q 037499 82 -------RVVPEEIIFCNVISF--------YGRARLLEHALQVF--DEMS----SFNVQRT------------------- 121 (262)
Q Consensus 82 -------~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~--~~~~----~~~~~~~------------------- 121 (262)
..+.....|..+++- +.+.++-.++...| +... ..|..|+
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHH
Confidence 111222222222220 00111111111111 0000 0011111
Q ss_pred ------------------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 122 ------------------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 122 ------------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
..+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..++|++-++
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1122223333344455555555444332 2777777777788888888776665
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (262)
+-+.++ ++.-|.-++.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--
T Consensus 737 fAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 737 FAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHH
Confidence 544332 255667788888888888888888766632 11 45667777888777766543
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.08 E-value=0.072 Score=39.67 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.+..+..-+..-.+.|++++|.+.|+.+..+... +-...+.-.++.++.+.++++.|+..+++..+..-.....-|-..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3445555666778889999999999999875422 223556667788888999999999999988765322222345555
Q ss_pred HHHHHh-------cCCHHHHHHHHHHH---HhcCC-----CChhHH------------HHHHHHHHhcCChhHHHHHHHH
Q 037499 129 LNAMLT-------CGKIDRMTDLFQIM---EKYVS-----PDACSY------------NILMHGCVVSRRLEDAWKVFDE 181 (262)
Q Consensus 129 l~~~~~-------~g~~~~a~~~~~~~---~~~~~-----~~~~~~------------~~l~~~~~~~g~~~~a~~~~~~ 181 (262)
|.+++. ..+...+...|..+ ...-| +|...- ..+.+.|.+.|.+..|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555543 23444444444444 33322 121111 2344556666666666666666
Q ss_pred HHHCCCCCc---hHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499 182 MLKRRLQPT---LVTFGTLIYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 182 m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~ 218 (262)
|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+.
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 6665 2111 2334445556666666666666655553
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=97.06 E-value=0.11 Score=42.25 Aligned_cols=164 Identities=14% Similarity=0.101 Sum_probs=111.5
Q ss_pred HHH--HHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHh
Q 037499 52 LHY--DLIITKLGRA-----KMFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGR---------ARLLEHALQVFDEMS 114 (262)
Q Consensus 52 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 114 (262)
..| ..++++.... ...+.|+.+|.+......+.|+ ...|..+..++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5566655552 3466788899998843334454 3444444433322 234567778888888
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCchHH
Q 037499 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPTLVT 193 (262)
Q Consensus 115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~ 193 (262)
+.+ +.|..+...+..++.-.++++.|..+|++.....+....+|....-.+.-.|+.++|.+.+++..+..+ +.-...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 877 778888888888888888899999999999998887777777777777889999999999999776522 112233
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
....+..|+. ...++|++++-+-
T Consensus 411 ~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 411 IKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHcC-CchhhhHHHHhhc
Confidence 3344445654 4567777776443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.11 Score=41.24 Aligned_cols=202 Identities=14% Similarity=0.084 Sum_probs=127.2
Q ss_pred hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHH
Q 037499 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIIT--KLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNV 93 (262)
Q Consensus 18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l 93 (262)
..||-..|.++-.+... -...|....-.++. ...-.|+++.|.+-|+-|... |... -...|
T Consensus 96 gAGda~lARkmt~~~~~-----------llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL 160 (531)
T COG3898 96 GAGDASLARKMTARASK-----------LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL 160 (531)
T ss_pred ccCchHHHHHHHHHHHh-----------hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence 46788888887776532 22234433333433 334469999999999999863 2222 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhH--HHHHHHHHH--
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACS--YNILMHGCV-- 167 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~--~~~l~~~~~-- 167 (262)
.-..-+.|+.+.|..+-+..-..- +.-...+...+...+..|+|+.|+++++.-+.... ++..- -..++.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 444457789999998888876653 34457888999999999999999999987765543 33221 112222211
Q ss_pred -hcCChhHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 168 -VSRRLEDAWKVFDEMLKRRLQPTLV-TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 168 -~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
-..+...|...-.+..+ ..||.. .-.....++.+.|+..++-++++.+.+. .|.+..+...+ +.+.|+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd 309 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD 309 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC
Confidence 12345556666555555 345533 3334557789999999999999999975 56555543322 445555
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.041 Score=46.74 Aligned_cols=184 Identities=10% Similarity=-0.007 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH--------HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--------FCNVISFYGRARLLEHALQVFDEMSSFNVQ 119 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (262)
.|.+..|..+.......-.++.|...|-+...-.|++.--.. -.+=+.+ --|++++|+++|-++-.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 468889999998888888888888888777654444322111 1111222 24889999999888765432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHH-------------HHH
Q 037499 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDE-------------MLK 184 (262)
Q Consensus 120 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~-------------m~~ 184 (262)
.+..+.+.|+|-.+.++++.-..... .-...|+.+...+.....|+.|.+.|.. +..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 23444555555555444433111100 1123344444444444444444433332 111
Q ss_pred --------CCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 185 --------RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 185 --------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
...+-+....-.+..++...|.-++|.+.+-+.. .| ...+..|...+++.+|.++-++
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1133355556667777777777777777664432 12 2234567777777777766544
No 234
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.05 E-value=0.048 Score=37.10 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
...++..+.+.+.+.....+++.+.+.+ ..+...++.++..|++.+. .+.++.+.. . .+......+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c---cccCCHHHHHHHHHHc
Confidence 3457788888899999999999998887 4777889999999987643 444444442 1 3344456688888888
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA 239 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 239 (262)
+-++++..++.++.. .......++. ..++++.|.+++.+. .+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ-------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC-------CCHHHHHHHHHHHHc
Confidence 999999888887643 2233333332 227888888877652 256678888776654
No 235
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.04 E-value=0.011 Score=46.85 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCchH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIME----KYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL-QPTLV 192 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~ 192 (262)
.|..|.+.|.-.|+++.|+..-+.-. +-|. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555556688888877654322 2222 44567888999999999999999998875432 21 12334
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMRV----YNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+..+|...|.-..+++.|+.++.+-..- ....-....+.+|..+|...|..++|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566788888888999999988765432 011224567889999999999999999877765543
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.1 Score=40.51 Aligned_cols=155 Identities=9% Similarity=-0.007 Sum_probs=115.1
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIF 90 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 90 (262)
.+...|.+.+|...++++ +..++-|...+.-.=.++.-.|+.......++++... ..++. .+.
T Consensus 112 i~~~~g~~h~a~~~wdkl-----------L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKL-----------LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVH 178 (491)
T ss_pred HhhccccccHHHHHHHHH-----------HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHH
Confidence 345577888888788887 5577789889888889999999999999999888753 23443 333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHH
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGC 166 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~ 166 (262)
....-++..+|-+++|++.-++..+.+ +.|..+-.+....+-..|+..++.+...+-...-. .-..-|-...-.+
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 344455668999999999999999887 67778888888999999999999998876554322 1112233334455
Q ss_pred HhcCChhHHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEML 183 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~ 183 (262)
...+.++.|+++|++=.
T Consensus 258 iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREI 274 (491)
T ss_pred hcccchhHHHHHHHHHH
Confidence 66699999999997643
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.11 Score=39.62 Aligned_cols=153 Identities=11% Similarity=0.020 Sum_probs=98.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 174 (262)
.....|++..|...|....... +-+...-..+..+|...|+.+.|..++..+..... ........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888877654 44556677778888888888888888887765433 222222334555555555555
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251 (262)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (262)
...+-++.... +-|...-..+...+...|+.+.|.+.+-.+.+...-.-|...-..|++.+.-.|.-+.+.--++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555555543 2255555566777888888888887766665543334466677788888887775554443333
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.90 E-value=0.054 Score=35.87 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=42.1
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC---hhHHHHHHHHHHhcCCh
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD---ACSYNILMHGCVVSRRL 172 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~---~~~~~~l~~~~~~~g~~ 172 (262)
....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..- .+ ...|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555544432 33444555555555555555555555544433222 11 11222333445555555
Q ss_pred hHHHHHHHHHHHCC
Q 037499 173 EDAWKVFDEMLKRR 186 (262)
Q Consensus 173 ~~a~~~~~~m~~~~ 186 (262)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55655555555544
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.07 Score=46.16 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=119.2
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
+...-+..+.+..-++-|+.+-+.-.. +...-..........+.+.|++++|...|-+...- +.|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-----------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~ 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-----------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH
Confidence 445567788888889999888877621 11112234455556667789999999988877652 44543
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
+|.-|....+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.+..+... .|.. ..-....+..+.
T Consensus 403 -----Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~-~fd~e~al~Ilr 474 (933)
T KOG2114|consen 403 -----VIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW-FFDVETALEILR 474 (933)
T ss_pred -----HHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce-eeeHHHHHHHHH
Confidence 46667777777788888888888885 456666788999999999888777776654 2220 112345566666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
+.+-.+.|..+-..... +......++ -..|++++|++++..+
T Consensus 475 ~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 475 KSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777777666554433 333444443 3567788888877654
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.88 E-value=0.045 Score=44.89 Aligned_cols=130 Identities=20% Similarity=0.233 Sum_probs=96.6
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
.+.++..+.+.|..+.|+.+-+.- ..-.....+.|+++.|.++.++. .+..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~----------------------~~rFeLAl~lg~L~~A~~~a~~~-------~~~~ 348 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP----------------------DHRFELALQLGNLDIALEIAKEL-------DDPE 348 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H----------------------HHHHHHHHHCT-HHHHHHHCCCC-------STHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh----------------------HHHhHHHHhcCCHHHHHHHHHhc-------CcHH
Confidence 467788888999999999887664 13456778899999998875433 4677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
.|..|.....+.|+++.|++.|.+..+ |..|+-.|.-.|+.++-.++.+.....+. ++....++.-
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~ 414 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHH
Confidence 899999999999999999999988764 66788888999999888888877766543 4555666667
Q ss_pred cCChhHHHHHHHH
Q 037499 169 SRRLEDAWKVFDE 181 (262)
Q Consensus 169 ~g~~~~a~~~~~~ 181 (262)
.|+.++..+++.+
T Consensus 415 lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 415 LGDVEECVDLLIE 427 (443)
T ss_dssp HT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 7888887777654
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.87 E-value=0.031 Score=42.13 Aligned_cols=102 Identities=12% Similarity=0.167 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----------------CHH
Q 037499 46 PFRYNLLHYDLIITKLGRA-----KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR----------------LLE 104 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~ 104 (262)
+.+.|-.+|.+.+..+... +.++-....++.|.+ .|+.-|..+|..|++.+-+-. +-+
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 4566888888888888765 678888888888988 489999999999998775532 235
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 037499 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI-DRMTDLFQIM 148 (262)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 148 (262)
-+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 6889999999999999999999999999988753 3334444344
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.85 E-value=0.17 Score=40.30 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChhh
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV--VPEEIIFCNVISFYGR---ARLLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
+..+...++-.|....+++..+++.+.+...... .-+..+-....-++.+ .|+.++|++++..+....-.++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3333446666899999999999999999875322 2223333345556667 8999999999999655555788889
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-hh---HHHHHH----HHHHHCC-
Q 037499 125 FNTLLNAMLT---------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR-LE---DAWKVF----DEMLKRR- 186 (262)
Q Consensus 125 ~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~m~~~~- 186 (262)
|..+...|-. ....++|+..|.+.-+.. ++...--.++..+...|. .+ +..++- ..+.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~-~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE-PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC-ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 9888887642 224788888888776544 222221122222222222 22 222222 1222333
Q ss_pred --CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 187 --LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 187 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
-..|-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2345566778888999999999999999999864
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.77 E-value=0.0076 Score=31.74 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
+...|.+.|++++|.++|++..+..+.|.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 33334444444444444444433333333
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.13 Score=37.40 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMH 164 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~ 164 (262)
+.+||-|.--+...|+++.|.+.|+...+.. +....+...-.-++.--|++.-|.+=|...-..++ |-...|.-++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5567777777778888888888888887764 22222322222334456778888777777666655 33334443333
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHH
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-------AQVFASLIKGL 237 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~ 237 (262)
..-++.+|..-+.+--+. .|..-|...|-.|. .|++.+ ..+++++.. +-.-+ ..||-.|.+-|
T Consensus 178 ---~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a--~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFY-LGKISE-ETLMERLKA--DATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHH-HhhccH-HHHHHHHHh--hccchHHHHHHHHHHHHHHHHHH
Confidence 333455554443332221 24344444443332 344332 344555543 22222 34677788888
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 037499 238 CAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~~g 257 (262)
...|+.++|..+|+-.+...
T Consensus 248 l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 248 LSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccccHHHHHHHHHHHHHHh
Confidence 89999999999998766543
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.72 E-value=0.19 Score=39.00 Aligned_cols=129 Identities=13% Similarity=0.217 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCCh
Q 037499 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT--C----GKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 172 (262)
+.+.+.+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++..+ ++-.++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45666788999999999888777664444433 2 235689999999998876 344455555443 44443
Q ss_pred ----hHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 173 ----EDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 173 ----~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
+.++.+|+.+.+.|...+ ......++..+..... ...+..+++.+.+. ++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 567888888888776543 3455555544333222 45788889999777 9988887776554
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.72 E-value=0.036 Score=42.11 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTLVTFGTL 197 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~l 197 (262)
.++..++..+...|+.+.+.+.++.+....+.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35666777777888888888888888888888888888888888888888888888887765 4777777776666
Q ss_pred HHH
Q 037499 198 IYG 200 (262)
Q Consensus 198 i~~ 200 (262)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=96.64 E-value=0.28 Score=39.94 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHhh-cCCCCC-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 102 LLEHALQVFDEMSS-FNVQRT-VKSFNTLLNAMLT---------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 102 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+.|+.+|.+... ..+.|+ ...|..+..++.. .....+|.++-+...+.++.|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 35688889998882 122443 3455544444332 234667888888889988999999999999889999
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD---AQVFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 247 (262)
+++.|...|++....+.. ...+|......+.-.|+.++|.+.+++..+. .|. .......+..|+..+ ++.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL---sP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL---EPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 999999999999986422 3445555555667789999999999997743 553 333344444566554 46666
Q ss_pred HHHH
Q 037499 248 GFKE 251 (262)
Q Consensus 248 ~~~~ 251 (262)
.++-
T Consensus 428 ~~~~ 431 (458)
T PRK11906 428 KLYY 431 (458)
T ss_pred HHHh
Confidence 6654
No 248
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.2 Score=38.16 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=51.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037499 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRM 141 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 141 (262)
...|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 33455555555555555532 2333444455555666666666666665554321111111111122233333332222
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 142 TDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
..+-+..-. .+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222221 223444444555555555555555555444433
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.59 E-value=0.25 Score=40.06 Aligned_cols=138 Identities=11% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH--
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEE------IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-- 131 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-- 131 (262)
.+.+++++.+|.++|.++.++. ..++ ...+.++++|.. ++.+.....+..+.+.. | ...|-.+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHH
Confidence 4556799999999999998753 3332 233456777754 66777777777776542 2 3345555443
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC---------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCchH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVS---------------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTLV 192 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~ 192 (262)
+.+.+++++|++.+..-.+... +|-..=+..+.++...|++.+++.+++++... ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 3578899999998876654411 12222256778888999999999999998764 3347888
Q ss_pred HHHHHHHHHHh
Q 037499 193 TFGTLIYGLCL 203 (262)
Q Consensus 193 ~~~~li~~~~~ 203 (262)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88876544443
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.57 E-value=0.03 Score=42.19 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
-+++++++|... |+.||..+-..|+.++.+.+-
T Consensus 141 C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 455666666443 666666666666666655543
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.56 E-value=0.0092 Score=31.42 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.54 E-value=0.19 Score=36.69 Aligned_cols=202 Identities=16% Similarity=0.086 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
....+......+...+.+..+...+...............+......+...+++..+.+.+.........+ ........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 35677788888999999999999988887521134556667777888888889999999999888754222 22333333
Q ss_pred H-HHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 130 N-AMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 130 ~-~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
. .+...|+++.|...+.......+ .....+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 3 78899999999999998855322 2334444455557788999999999999988632213667777888888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 206 RVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+++.+...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 217 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999998764 443 44455555555577778888888877665
No 253
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.3 Score=39.05 Aligned_cols=165 Identities=13% Similarity=0.004 Sum_probs=110.9
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh---
Q 037499 49 YNLLHYDLII-TKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS--- 124 (262)
Q Consensus 49 ~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 124 (262)
|....|-.+- .++.-.+++++|.+.--.+.+.. ..+......-..++.-.++.+.|...|++.+..+ |+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~ 241 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS 241 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh
Confidence 3334444433 45566799999999888887753 2233222222334445678899999999888754 33221
Q ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499 125 ----------FNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190 (262)
Q Consensus 125 ----------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 190 (262)
+..-.+-..+.|++.+|.+.|.+.....| ++...|........+.|+..+|+.--+...+.+ +
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~ 318 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---S 318 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---H
Confidence 22223344678999999999999988776 666778888888899999999999988887742 2
Q ss_pred hHH--HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 191 LVT--FGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 191 ~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..+ |..-..++...++|++|.+-++...+.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 222234455678899999988887765
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.53 E-value=0.12 Score=40.57 Aligned_cols=237 Identities=12% Similarity=0.048 Sum_probs=148.0
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HH---HhcCCCC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH-QL---KHDTRVV 84 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~---~~~~~~~ 84 (262)
...-+.-+..+.+.++|+..+.....+. .....-..+|..+..+.++.|.+++++..-- +| .+...-.
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l--------~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKL--------SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHH--------HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667788888888877664441 1222344577788888899999888766431 11 1110001
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----C-C
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV-----S-P 154 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~ 154 (262)
.-...|..+.+++.+.-++.+++.+-..-... |..| .-....++..+....+.++++++.|+...+.. + .
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L 160 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML 160 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee
Confidence 12345666777777777777777766554432 1111 12344556777888889999999998775432 1 4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCch-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---C
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTL-----VTFGTLIYGLCLELRVDEALKLKEDMMRVY---N 222 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~ 222 (262)
...++..+.+.|.+..++++|.-+..+..+. ++..=. .....+.-++...|+...|.+..++..+.. |
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 4568899999999999999998877665542 222111 122334456777888888888888765531 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 223 VKP-DAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 223 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
-.+ -......+.+.|...|+.+.|+.-|+..
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222 2334556677888999999888776653
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.44 E-value=0.14 Score=34.04 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=53.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH---HHHHHhcC
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL---LNAMLTCG 136 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g 136 (262)
+++..|+.+.|++.|.+...- .+-....||.-..++--.|+.++|++-+++..+..-..+...+.+. ...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 555667777777777666652 3455666777777776677777777766666554323333333222 33455566
Q ss_pred CHHHHHHHHHHHHhcC
Q 037499 137 KIDRMTDLFQIMEKYV 152 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~ 152 (262)
+-+.|..=|+..-..|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666655444
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.38 E-value=0.17 Score=34.39 Aligned_cols=127 Identities=8% Similarity=0.125 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
...++..+.+.+.......+++.+... + ..+...++.++..|++.+ ..+..+.+.. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 346788888889999999999999886 3 467778999999998764 4444555542 123344566888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
+.+.++++..++.++.. +...+..+... ++++.|.+++.+- .+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 99999999999888753 23334444444 7888888887751 256677777766553
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.34 E-value=0.46 Score=39.05 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcC---C-------------
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSFN---V------------- 118 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~------------- 118 (262)
.+|...-+..+...-++.-++..+. .|+.. .|..| +-..+....+|+++|++..+.| +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei---~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI---NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh---hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 4566666777777777777777653 34432 22222 2223556778888887765432 0
Q ss_pred ----CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-
Q 037499 119 ----QRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL- 187 (262)
Q Consensus 119 ----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~- 187 (262)
..+ ..+-..+..++-+.|+.++|++.|++|.+..+ .+......++.++...+.+.++..++.+-.+...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 001 12223455666678999999999999977655 3556788999999999999999999988754322
Q ss_pred CCchHHHHHHHHH
Q 037499 188 QPTLVTFGTLIYG 200 (262)
Q Consensus 188 ~~~~~~~~~li~~ 200 (262)
+.-...|+..+--
T Consensus 328 kSAti~YTaALLk 340 (539)
T PF04184_consen 328 KSATICYTAALLK 340 (539)
T ss_pred chHHHHHHHHHHH
Confidence 2234567765533
No 258
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.33 E-value=0.48 Score=39.12 Aligned_cols=166 Identities=10% Similarity=0.115 Sum_probs=113.9
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.|.....+++..++....+.-++.+-.+|...| -+...|..++.+|..+ .-++-..+|+++.+....|.+.-..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4566667778888888888888888888888765 5677888888888888 556677888877776666666666677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC--Cc---hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQ--PT---LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
..|.+ ++.+++..+|.+....=++ .+ ...|..+... -..+.+....+...+....|..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66666 7777777777777654211 01 1244444421 145666777777777666565556666677777777
Q ss_pred hcCChhHHHHHHHHHHH
Q 037499 239 AVGELSLALGFKEEMVR 255 (262)
Q Consensus 239 ~~g~~~~a~~~~~~m~~ 255 (262)
...++++|++++..+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 78888888888775544
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.29 E-value=0.36 Score=37.22 Aligned_cols=164 Identities=10% Similarity=0.113 Sum_probs=103.2
Q ss_pred HHhcCChhHHHHHHHHHHhcC-CCCccHH-----HHHHHHHHHHhcC-CHHHHHHHHHHHhhc--------CCCCC----
Q 037499 61 LGRAKMFDEVQQILHQLKHDT-RVVPEEI-----IFCNVISFYGRAR-LLEHALQVFDEMSSF--------NVQRT---- 121 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 121 (262)
..+.|+++.|..++.+..... ...|+.. ++..+.....+.+ +++.|..++++..+. ...++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999998753 2344421 2223334444566 888888888765433 11222
Q ss_pred -hhhHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499 122 -VKSFNTLLNAMLTCGKID---RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197 (262)
Q Consensus 122 -~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 197 (262)
..+...++.+|...+..+ +|..+++.+....+..+.++..-+..+.+.++.+.+.+.+.+|... +......+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 235677788888877654 5666666675554444667767788888899999999999999987 22233455555
Q ss_pred HHHH---HhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499 198 IYGL---CLELRVDEALKLKEDMMRVYNVKPDA 227 (262)
Q Consensus 198 i~~~---~~~g~~~~a~~~~~~~~~~~~~~p~~ 227 (262)
+..+ .... ...|...++.+... .+.|..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHH-HhCCCh
Confidence 5444 4333 34555655555544 444443
No 260
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.15 Score=42.67 Aligned_cols=152 Identities=15% Similarity=0.100 Sum_probs=105.6
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS 95 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (262)
+.-.|+++.|..++..+. ....+.++..+.+.|-.++|+++-. .|+.. ..
T Consensus 596 ~vmrrd~~~a~~vLp~I~-----------------k~~rt~va~Fle~~g~~e~AL~~s~--------D~d~r-----Fe 645 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-----------------KEIRTKVAHFLESQGMKEQALELST--------DPDQR-----FE 645 (794)
T ss_pred HhhhccccccccccccCc-----------------hhhhhhHHhHhhhccchHhhhhcCC--------Chhhh-----hh
Confidence 334677777777665551 3344567778888888888876521 22221 23
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 175 (262)
...+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+..
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHH
Confidence 3457788888887765543 456689999999999999999999988765 67777788888888777
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
..+-....+.|.. |...-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777766532 33444667789999988887654
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.24 E-value=0.65 Score=39.71 Aligned_cols=183 Identities=13% Similarity=0.056 Sum_probs=115.1
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhh-------cCCCCChhhHHHHHHHHHhcC--
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISF-YGRARLLEHALQVFDEMSS-------FNVQRTVKSFNTLLNAMLTCG-- 136 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g-- 136 (262)
...+...++...+...+.+-...=.....+ +....+.+.|+.+|+...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 457888888888763221111111122222 4467799999999998876 55 2335666777777643
Q ss_pred ---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH----hhCCHH
Q 037499 137 ---KIDRMTDLFQIMEKYVSPDACSYNILMHGCVV-SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC----LELRVD 208 (262)
Q Consensus 137 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~ 208 (262)
+.+.|+.++...-..+.|+.......+..... ..+...|.++|....+.|..+ .+-.+..+|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCHH
Confidence 67889999999988888877766555544444 356789999999999988532 2222222222 224788
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
.|..++.+..+. + .|...--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 999999998775 5 3332222233333444 677777766666666554
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.22 E-value=0.15 Score=36.32 Aligned_cols=61 Identities=11% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
.+..+...|.+.|+.+.|++.|.++.+....+. ...+-.++......+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544332222 1223444444444455555444444443
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.17 E-value=0.22 Score=33.71 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
+...+..-.....+.|++++|.+.|+.+..+....+ ....--.|+.+|.+.+++++|...+++.++.+-.....-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 344455566678889999999999999998642222 2455667899999999999999999999987522223445555
Q ss_pred HHHHHhc
Q 037499 129 LNAMLTC 135 (262)
Q Consensus 129 l~~~~~~ 135 (262)
+.+++.-
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5655443
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.13 E-value=0.078 Score=40.38 Aligned_cols=79 Identities=9% Similarity=0.115 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQVFAS 232 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 232 (262)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566666777777777777777777663 34666777777777777777777777776644 2366666666655
Q ss_pred HHHH
Q 037499 233 LIKG 236 (262)
Q Consensus 233 l~~~ 236 (262)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.94 E-value=0.27 Score=32.74 Aligned_cols=134 Identities=9% Similarity=-0.005 Sum_probs=65.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCH
Q 037499 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF---NTLLNAMLTCGKI 138 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~ 138 (262)
.-.|.+++..+++.+..... +..-++-+|--....-+-+-..++++.+-+ --|...+ ..++.+|...|
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n-- 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRN-- 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhc--
Confidence 34588999999999888754 233333333333333444555555555443 2222221 22233333333
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 218 (262)
.+.......+......|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..
T Consensus 84 ---------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 84 ---------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 22333444555566666666666666666542 24455566666666666666666666666665
Q ss_pred Hh
Q 037499 219 RV 220 (262)
Q Consensus 219 ~~ 220 (262)
+.
T Consensus 148 ek 149 (161)
T PF09205_consen 148 EK 149 (161)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.58 Score=40.89 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
.....-+..+.+...++.|+.+.+.-.. .++ ......-.+.+.+.|++++|...|-+-...- .|+ .++
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHH
Confidence 3445677788888889999888765432 222 2334445556668899999999887766432 332 245
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
.-|....+..+-..+++.+.+.+..+...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 566677778888888999999999888889999999999999999888877655 3321 1124456666777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
|..+-.+... +...... .+-..+++++|++++..+
T Consensus 482 a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 7766555422 2222222 234556677777666543
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.91 E-value=0.2 Score=35.68 Aligned_cols=60 Identities=15% Similarity=0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444455555555555555555444422222 223334444444455555555444444
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.86 E-value=0.0041 Score=30.72 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHhhcCChHHHHH
Q 037499 1 MNKAKPTSPFRLASLLRLQKDPKLALQ 27 (262)
Q Consensus 1 l~~~~~~~~~~l~~~~~~~g~~~~A~~ 27 (262)
++|.++.+|+.++.++...|++++|++
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 478999999999999999999999864
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.4 Score=33.63 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChh-HHHH--
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDAC-SYNI-- 161 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~-- 161 (262)
...|...++ +.+.+..++|+.-|..+.+.|...-+ -...-+.....+.|+...|...|.++-...+ |-.. -...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 444555554 35667788888888888876633211 1222233455677888888888888876655 4433 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP 225 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p 225 (262)
-.-.+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+... ...|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D-a~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND-AQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc-ccCc
Confidence 23334577888888777777766554434444556666667888888888888888765 3344
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=0.52 Score=34.25 Aligned_cols=191 Identities=15% Similarity=0.087 Sum_probs=140.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
.+....+...+...............+......+...+.+..+...+...... ........+......+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46677777777777664211113567788888899999999999999888752 22555667777888888899999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 143 DLFQIMEKYVSPDACSYNILMH-GCVVSRRLEDAWKVFDEMLKRRL--QPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
+.+.........+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999998766643333444444 78999999999999999866321 12334444444556788999999999999986
Q ss_pred hcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 220 VYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 220 ~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
. ... ....+..+...+...++++.+...+......
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 4 233 4677888888899999999999998887763
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.69 E-value=0.83 Score=37.66 Aligned_cols=138 Identities=19% Similarity=0.146 Sum_probs=79.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------CC
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---------------------PD 155 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------~~ 155 (262)
=+..+...-++.-.+..+. .|+- ..|..| +--......+|.+++++..+.+. .+
T Consensus 179 WRERnp~aRIkaA~eALei--~pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--NPDCADAYILL--AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 3455565555555555553 2332 223222 22245567888888888755321 01
Q ss_pred ----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HH
Q 037499 156 ----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQ 228 (262)
Q Consensus 156 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 228 (262)
...-..+..++.+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+..+. . -|. ..
T Consensus 255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-~-lpkSAti 332 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI-S-LPKSATI 332 (539)
T ss_pred cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-c-CCchHHH
Confidence 111134566667888888888888888765322 23446677888888888888888888876432 1 233 33
Q ss_pred HHHHHHHHHHhcC
Q 037499 229 VFASLIKGLCAVG 241 (262)
Q Consensus 229 ~~~~l~~~~~~~g 241 (262)
.|+..+-.+...+
T Consensus 333 ~YTaALLkaRav~ 345 (539)
T PF04184_consen 333 CYTAALLKARAVG 345 (539)
T ss_pred HHHHHHHHHHhhc
Confidence 5655443333333
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.57 E-value=0.58 Score=34.23 Aligned_cols=161 Identities=11% Similarity=-0.062 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
-+.+||-+.--+...|+++.|.+.|+...+-+ +....+...-.-++.=.|++..|.+-|...-+.. +.|+ |.++-
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LW 172 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLW 172 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHH
Confidence 45678888888899999999999999988753 2223333332333345688888888777766543 2232 22222
Q ss_pred H-HHHhcCCHHHHHHHH-HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------CchHHHHHHHHHH
Q 037499 130 N-AMLTCGKIDRMTDLF-QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ------PTLVTFGTLIYGL 201 (262)
Q Consensus 130 ~-~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~li~~~ 201 (262)
- .--+.-+..+|..-+ ++... .|..-|...|-.|.- |++. ...+++++....-. .=..||--+...+
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 1 112233455555433 34333 444445443333321 1111 12233333321110 1145777888888
Q ss_pred HhhCCHHHHHHHHHHHHHh
Q 037499 202 CLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~ 220 (262)
...|+.++|..+|+-....
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 8999999999999887763
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.57 E-value=0.83 Score=35.55 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR--AR----LLEHALQVFDEMSSFNVQ---RTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~ 137 (262)
+++.+.+++.+.+. |+.-+..+|-+....... .. ...+|.++|+.|++...- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 56677888888886 788887776654433333 22 356889999999986422 233345555443 3333
Q ss_pred ----HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcC-C--hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--
Q 037499 138 ----IDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSR-R--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR-- 206 (262)
Q Consensus 138 ----~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g-~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-- 206 (262)
.+.+..+|+.+.+.+. .|..-+.+-+-++.... . ...+.++++.+.+.|+++....|..+.- ++-.++
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl-Lall~~~~ 233 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL-LALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH-HHhcCCch
Confidence 4677888888888666 34333333333333222 2 3478889999999999888777775543 332222
Q ss_pred ---HHHHHHHHHHHHHhcCCC
Q 037499 207 ---VDEALKLKEDMMRVYNVK 224 (262)
Q Consensus 207 ---~~~a~~~~~~~~~~~~~~ 224 (262)
.+...++.+.+.+..++.
T Consensus 234 ~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 334445555555544443
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.55 E-value=0.18 Score=31.44 Aligned_cols=61 Identities=7% Similarity=0.113 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
-++.+-++.+......|++.+..+.+++|.+.+++..|+++|+.+..+.+ .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 34566666666667788888888888888888888888888887765322 24446666554
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.55 E-value=0.36 Score=38.07 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=107.1
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----VV 84 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~ 84 (262)
+..+.+.+.+..++.+++.+-.+-...++ ..+-+.--....++..+....+.++++++.|+...+-.. --
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpg------t~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPG------TRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCC------CCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence 45566677777777777777766655432 111111223445577778888889999999988765321 12
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCChh-hHHH-----HHHHHHhcCCHHHHHHHHHHHHhc---
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRTVK-SFNT-----LLNAMLTCGKIDRMTDLFQIMEKY--- 151 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~--- 151 (262)
....++..|...|.+..++++|.-+..+..+ .++ -|.. -|.. |.-++...|....|.+.-++..+.
T Consensus 160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2356788899999999999999877665543 221 1221 1222 334556678877777777665433
Q ss_pred -CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 152 -VS--PDACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 152 -~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
|. .-......+.+.|...|+.+.|+.-|+...
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 334455677888999999999988887654
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.54 E-value=0.23 Score=31.29 Aligned_cols=60 Identities=8% Similarity=0.139 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
+..+-++.+......|++.+..+.+++|.+.+++..|+++|+.+....+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666666777888888888888888888888888888776653322 226665553
No 277
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.49 E-value=0.81 Score=34.98 Aligned_cols=146 Identities=12% Similarity=0.176 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhc--CCCChhHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSS-FNVQRTVKSFNTLLNAMLT-CG-KIDRMTDLFQIMEKY--VSPDACSYNILMH 164 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~~--~~~~~~~~~~l~~ 164 (262)
|..|+. +...+.+|+++|+.... ..+-.|..+...+++.... .+ ....--++.+-+... +.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 34456677777774332 2334566666666666655 22 222223333333333 3377777778888
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHH----HHHhcCCCCCHHHHHHHHHHHH
Q 037499 165 GCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKED----MMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
.++..+++.+-+++++..... +..-|..-|..+|......|+..-..++.++ ..++.++..+...-..+-+.+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 888888888888887776655 5556777788888888888887777777654 1233466666665555544443
No 278
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.40 E-value=1.7 Score=39.70 Aligned_cols=147 Identities=10% Similarity=0.066 Sum_probs=72.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcC----CCCcc--HHHHHHHHHHHHhcC--CHHHHHHHHHH------HhhcCCCCChhhH
Q 037499 60 KLGRAKMFDEVQQILHQLKHDT----RVVPE--EIIFCNVISFYGRAR--LLEHALQVFDE------MSSFNVQRTVKSF 125 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~--~~~~a~~~~~~------~~~~~~~~~~~~~ 125 (262)
+-..+.+..+-+-+++++++.. .+..| ..-|...+..+..+| -++++..+.++ .... ..|+...+
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~l-y~~~~e~~ 938 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALAL-YKPDSEKQ 938 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhhe-eccCHHHH
Confidence 3344567777777777776421 01111 112333444444444 34444443322 1111 23454444
Q ss_pred HHHHH----HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH--HHHHHH
Q 037499 126 NTLLN----AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT--FGTLIY 199 (262)
Q Consensus 126 ~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~ 199 (262)
..... -+.+...+++|.-.|+..-+ ..-.+.+|..+|+|.+|+.+..++.... +... -..|+.
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHH
Confidence 44433 33445666666666665543 2345566677777777777766654321 2111 134555
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 037499 200 GLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~ 218 (262)
-+...++.-+|-++..+..
T Consensus 1008 ~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHcccchhHHHHHHHHh
Confidence 5666666666666665554
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.38 E-value=0.81 Score=34.29 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=109.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNI 161 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 161 (262)
|-...|+.-+. -.+.|++++|.+.|+.+.... -+-...+--.++.++.+.+++++|+..+++.....+ .....|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33444555444 458899999999999998653 122344556667788899999999999999988777 22333444
Q ss_pred HHHHHHhc-------CChhHH---HHHHHHHHHC----CCCCchHHH------------HHHHHHHHhhCCHHHHHHHHH
Q 037499 162 LMHGCVVS-------RRLEDA---WKVFDEMLKR----RLQPTLVTF------------GTLIYGLCLELRVDEALKLKE 215 (262)
Q Consensus 162 l~~~~~~~-------g~~~~a---~~~~~~m~~~----~~~~~~~~~------------~~li~~~~~~g~~~~a~~~~~ 215 (262)
.|.+.+.. .+...+ ..-|+++++. ...||...- ..+.+.|.+.|.+-.|..-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 44444322 233334 4444444443 122332221 123467889999999999999
Q ss_pred HHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 216 DMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 216 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+|.+.+.-.+ ....+-.+..+|...|-.++|...-.-+..
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9998633222 234566778899999999998876555443
No 280
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.38 E-value=1.5 Score=37.54 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH------------HH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILH------------QL 77 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------~~ 77 (262)
..++..++-.|++.+|.++|.+- |... -.+..|.....++.|.+++. +-
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~-------------G~en------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRS-------------GHEN------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHc-------------Cchh------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 34567788899999999999887 3321 23344444455555555442 11
Q ss_pred Hhc--CCCCccHHHHHHHHHHHHhcCCHHHHHHHHH------HHhhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499 78 KHD--TRVVPEEIIFCNVISFYGRARLLEHALQVFD------EMSSFNVQR---TVKSFNTLLNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 78 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~ 146 (262)
.+. +--+|. +....+..+|+.++|..+.- -+.+.+.+. +..+...+..-+.+...+.-|-++|.
T Consensus 697 A~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 697 ADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 110 001222 23455566788777776532 122222222 23344445555566677888889998
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH-----------HHHHHHHHHHhhCCHHHHHHHHH
Q 037499 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV-----------TFGTLIYGLCLELRVDEALKLKE 215 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~ 215 (262)
+|-. ...++..+...++|.+|..+-+...+. .||+. -|.-.-.+|.+.|+-.+|.++++
T Consensus 772 k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 772 KMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred Hhcc--------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 8865 356777888999999999998876653 33322 12333467888888888988888
Q ss_pred HHHH
Q 037499 216 DMMR 219 (262)
Q Consensus 216 ~~~~ 219 (262)
++..
T Consensus 842 QLtn 845 (1081)
T KOG1538|consen 842 QLTN 845 (1081)
T ss_pred Hhhh
Confidence 8754
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.30 E-value=0.059 Score=26.84 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777744
No 282
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.45 Score=36.73 Aligned_cols=99 Identities=10% Similarity=0.093 Sum_probs=47.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHH
Q 037499 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS----PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTF 194 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (262)
+.+..+...++..-....+.+.++..+-+++.... ++.. -.++++.+. .-++++++.++..=++.|+-||.+++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 34444444444444445555555555555544322 1111 111122211 22444555555555555566666666
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 195 GTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 195 ~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..+|..+.+.+++.+|..+...|+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666555555544443
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.24 E-value=0.061 Score=26.79 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDE 112 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~ 112 (262)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444455555555555555544
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.19 E-value=1.6 Score=36.70 Aligned_cols=188 Identities=11% Similarity=-0.011 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (262)
+++..+|...+..-.+.|+++.+.-+|+...-- +..=...|-..+.-....|+.+.|..++....+..++-...+.-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 347789999999999999999999999998752 333345566666666666999999998888777654433333222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH---HHHHHHHHCCCCCchHHHHHHHHH----
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW---KVFDEMLKRRLQPTLVTFGTLIYG---- 200 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~li~~---- 200 (262)
-....-..|+++.|..+++.+...-+.....-..-+....+.|+.+.+. .++........ +..+...+..-
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHH
Confidence 2233345689999999999998877433444455567777889988888 44443333222 22233333222
Q ss_pred -HHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 201 -LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 201 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
+.-.++.+.|..++.++.+ .++++...|..++..+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 2345889999999999986 66778888888887766654
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.14 E-value=1.7 Score=36.60 Aligned_cols=186 Identities=12% Similarity=0.004 Sum_probs=123.7
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
+....|..-+..-...|+++.+.-+|+.. +-+...-...|--.+.-....|+.+.|..++....+- -+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~erc-----------li~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~ 362 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERC-----------LIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HV 362 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHH-----------HhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cC
Confidence 34455677777788899999999999998 3344456677888888888889999999888877764 23
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCChhHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMT---DLFQIMEKYVSPDACSY 159 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~ 159 (262)
+-.+.+.-.-....-..|+++.|..+++.+...- |+. ..-..-+....+.|..+.+. +++...... ..+....
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~ 439 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGIL 439 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchh
Confidence 3333332222333445689999999999998763 443 33333455666788888877 444333332 2222233
Q ss_pred HHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 160 NILMHG-----CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 160 ~~l~~~-----~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
..+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 322222 23467889999999999886 5667778888887766555
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.03 E-value=0.092 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444445555555555555555444
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.00 E-value=0.034 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHhcCCHHHH
Q 037499 122 VKSFNTLLNAMLTCGKIDRM 141 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a 141 (262)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.88 Score=32.04 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.|.-+-.+.|++.+|...|..+..
T Consensus 172 ALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHHc
Confidence 344444445555555555554444
No 289
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.79 E-value=1.9 Score=35.30 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=86.9
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 93 (262)
.+-+++++++|.++|.++..... ..++... ...-+.++++|.. ++.+.....+..+.+..|-.+-...+..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~------~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~- 86 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE------SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKA- 86 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh------cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHH-
Confidence 34578999999999998855421 1112222 2223445555554 5677777777777775432222222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc--CCCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C
Q 037499 94 ISFYGRARLLEHALQVFDEMSSF--NVQR------------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-----P 154 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~ 154 (262)
-.+.+.+.+.+|++.+..-... +..+ +...=+..+.++...|++.++..+++++...-. .
T Consensus 87 -L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 87 -LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred -HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 2345778888888887765543 2122 112224557788899999999999988865432 5
Q ss_pred ChhHHHHHHHHHH
Q 037499 155 DACSYNILMHGCV 167 (262)
Q Consensus 155 ~~~~~~~l~~~~~ 167 (262)
+..+|+.++-.+.
T Consensus 166 ~~d~yd~~vlmls 178 (549)
T PF07079_consen 166 NSDMYDRAVLMLS 178 (549)
T ss_pred cHHHHHHHHHHHh
Confidence 7777776544443
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.76 E-value=0.48 Score=34.17 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=42.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN--VKPDAQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 245 (262)
+.|+ +.|.+.|-.+...+.--++.....|. .|....+.++++.++.+..+... -.+|+..+..|+..|.+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 45555555555554433444444443 33335666666666666554321 24566666777777777666666
Q ss_pred HH
Q 037499 246 AL 247 (262)
Q Consensus 246 a~ 247 (262)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 53
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.71 E-value=0.77 Score=41.76 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=90.6
Q ss_pred HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHhcC--ChhHHHHHHHHHHhcC----CCC
Q 037499 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL--LHYDLIITKLGRAK--MFDEVQQILHQLKHDT----RVV 84 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~----~~~ 84 (262)
+-+-..+.|+.+=+-+++.++.... ..+.++.|. .-|...+..+.+.| -+++++.+.++-.--. -+.
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~~-----~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~ 932 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKMET-----LLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYK 932 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhchh-----hhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheec
Confidence 3344456677776666666643211 011222222 22344444444444 3444444433221100 123
Q ss_pred ccHHHHHH----HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499 85 PEEIIFCN----VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160 (262)
Q Consensus 85 ~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 160 (262)
|+...+.. ....+.....+++|.-.|+..-+ ....+.+|-.+|+|.+|+.+..++......-..+-.
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~ 1003 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAE 1003 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44443333 33344445566666655554432 123456777777777777777766542111122235
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.|+.-+...++.-+|-++..+.... | .-.+..+++...|++|.++....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 6677777777777777777665542 1 12334455666677766665443
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=0.6 Score=40.26 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
+.+.+..+.|.....-+.+.-+.-+...|+-.+|.++-.+.+ -|+...|-.-+.+++..++|++-+++-++.+
T Consensus 670 lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk--- 742 (829)
T KOG2280|consen 670 LQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK--- 742 (829)
T ss_pred HHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---
Confidence 334444444444444456666777788899999999888877 6888899989999999999998777665553
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
++.-|.-...+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++--+
T Consensus 743 --sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 --SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred --CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 2667888889999999999999998764322 1 466788889999888876543
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.50 E-value=0.15 Score=24.65 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 230 FASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
|..+..+|...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555444
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.48 Score=36.58 Aligned_cols=108 Identities=10% Similarity=0.112 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (262)
|.+....+-..++..-....+++.++..+-.+..... ..|+. +-.++++.+ -.-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4445556666667666777889999999888875321 11222 223344444 3457889999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD 155 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 155 (262)
+++.+++.+.+.+++.+|..+.-.|......+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~ 168 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEAFE 168 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999887776554433
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=2.5 Score=35.89 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=99.4
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (262)
...+.++..+.++|-.++|+++-..-. .-.....+.|+++.|.++..+.. +
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d----------------------~rFelal~lgrl~iA~~la~e~~-------s 665 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPD----------------------QRFELALKLGRLDIAFDLAVEAN-------S 665 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChh----------------------hhhhhhhhcCcHHHHHHHHHhhc-------c
Confidence 345778888889999999887654431 12335567899999988876553 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....+-...++.+..|. ...+|
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~-----AF~~~ 731 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL-----AFLAY 731 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccch-----HHHHH
Confidence 56699999999999999999999988765 45677788888888876666666666655443 34567
Q ss_pred HhcCChhHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEM 182 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m 182 (262)
...|+++++.+++..-
T Consensus 732 ~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 732 FLSGDYEECLELLIST 747 (794)
T ss_pred HHcCCHHHHHHHHHhc
Confidence 7889999998887654
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.21 E-value=1.2 Score=30.83 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=29.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSF-NTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
.-.+.++.+.+..++..+.-. .|..... ..-...+...|++.+|+.+|+.+....
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 334556666666666666543 2332222 222334556666667776666665543
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.12 E-value=2.4 Score=33.75 Aligned_cols=192 Identities=13% Similarity=0.136 Sum_probs=98.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCChhhHHHHHHHH
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV----QRTVKSFNTLLNAM 132 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~ 132 (262)
...+.-+.|+|+...+........ .++..++..+... +.++++++....+.....-. ......|......+
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 356777888888866666655532 2455555555443 77888888888777654210 01112233332333
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-----hcCChhHHHHHH---HHHHH--CCCCCchHHHHHHHHHHH
Q 037499 133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV-----VSRRLEDAWKVF---DEMLK--RRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~---~~m~~--~~~~~~~~~~~~li~~~~ 202 (262)
.+...+.+..++.+-..... .+......++.... ...+++.-..++ ..+.. ........++..++..+.
T Consensus 79 ~~lq~L~Elee~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLS-QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 33333333333222221110 00111111111110 011111111111 11111 112345567888889999
Q ss_pred hhCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNVKP---DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+.|+++.|...+.++.+. .... .+.....-.+..-..|+..+|+..+++..+
T Consensus 158 k~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999988753 2111 233444445667788898999998888877
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=1.9 Score=32.26 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCch-HHHHHHHHHHH
Q 037499 134 TCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTL-VTFGTLIYGLC 202 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~ 202 (262)
++-++++|+.+|++....-. .-...+....+.+.+...+++|-..+.+-... .--++. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 34455556666555432211 11223444555555666665555444332211 011111 22344444555
Q ss_pred hhCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNV--KPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
...++..|.+.++.-.+..++ +-+..+...|+.+|- .|+.+++..
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 556666777766664332111 124455666665553 345454443
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.90 E-value=0.9 Score=37.37 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=23.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
+...|+++.+...+...... +.....+...+++...+.+++++|..+-+-|.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 33444455554444444331 22333344444444444445544444444444
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.89 E-value=0.94 Score=28.67 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
+..+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444443 3555555555555555555555555555555543
No 301
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.83 E-value=0.83 Score=33.43 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHG 165 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~ 165 (262)
.+..++.+.+.+...+|+...++-.+.. +.+...-..++..|+-.|+|++|..-++-.-...+ +-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445566667777777777777666554 55556667777777777887777766665544333 444556666654
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.82 E-value=0.97 Score=28.28 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
++.+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+..+
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444443 345555555555555555555555555555444
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.81 E-value=2.3 Score=32.38 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=128.1
Q ss_pred CCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCC--
Q 037499 47 FRYNLLHYDLIIT-KLGRAKMFDEVQQILHQLKHDTRVVPEE--IIFCNVISFYGRARLLEHALQVFDEMSS---FNV-- 118 (262)
Q Consensus 47 ~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-- 118 (262)
-.||+..=|..-. --.+..+.++|+.-|++..+-.|-+-+. .....++..+.+.+++++..+.|.++.. ..+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTr 101 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTR 101 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc
Confidence 3455544333222 1223458999999999998754433332 3456688899999999999999988853 211
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChh----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----
Q 037499 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDAC----SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ---- 188 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---- 188 (262)
..+....|++++....+.+.+--.+.++.-.+.-. .+.. |-+.+...|...|.+.+..++++++...--.
T Consensus 102 NySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe 181 (440)
T KOG1464|consen 102 NYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE 181 (440)
T ss_pred cccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCc
Confidence 23445678888777777776666555554332211 2222 3356778888888898888888888753111
Q ss_pred C-------chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHhcCChhHHHH
Q 037499 189 P-------TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG----LCAVGELSLALG 248 (262)
Q Consensus 189 ~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~a~~ 248 (262)
. =...|..=|+.|....+-..-..++++...-...-|.+.....+-.| ..+.|++++|..
T Consensus 182 dD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 182 DDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1 14567777888888888888888888776654555666554433222 235677777653
No 304
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.53 E-value=0.45 Score=37.24 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
+-|.+.|.+++|+.+|.......+.+++++..-..+|.+...+..|+.-.......+ ..-...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 457788899999999988877777788888888889998888887776666655432 0011223333333333345555
Q ss_pred HHHHHHHHHHhcCCCCC
Q 037499 210 ALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~ 226 (262)
|.+=++... .+.|+
T Consensus 184 AKkD~E~vL---~LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVL---ALEPK 197 (536)
T ss_pred HHHhHHHHH---hhCcc
Confidence 555555554 34555
No 305
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.51 E-value=1 Score=32.99 Aligned_cols=77 Identities=9% Similarity=0.023 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLN 130 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~ 130 (262)
+.+..++.+.+.+...+++...++-.+.. +.+...-..+++.++-.|++++|..-++-.-.. ...+...+|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 45566788889999999999998887753 566677788899999999999999877766543 12344566777766
Q ss_pred H
Q 037499 131 A 131 (262)
Q Consensus 131 ~ 131 (262)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 306
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.46 E-value=2.1 Score=30.98 Aligned_cols=92 Identities=10% Similarity=-0.001 Sum_probs=68.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRT-----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
.+-+.+.|++++|..-|.+.+..- ++. ...|..-..++.+.+.++.|+.--.+..+.++........-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 344567888888888888887753 332 23455556678888888888888888887777666666666778888
Q ss_pred cCChhHHHHHHHHHHHCC
Q 037499 169 SRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~ 186 (262)
...++.|+.-|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888899988888888763
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.32 E-value=2 Score=31.14 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----hhHHHHHHHHHHhcCChhHHHH
Q 037499 103 LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-----ACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
-++++.--+.++..| +-+...|++++|..-|.......++. ...|..-..++.+.+.++.|+.
T Consensus 88 k~k~~~kad~lK~EG------------N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~ 155 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEG------------NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIE 155 (271)
T ss_pred HHHHHHHHHHHHHHH------------HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 344555555566554 35568899999999988888776622 3456666778888899998888
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
-....++.+.. .......-..+|.+..++++|+.=|..+.+.
T Consensus 156 dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 156 DCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 88888876432 2223333345788888899998888888753
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.33 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m 182 (262)
..+..+|...|++++|...|++.
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHH
Confidence 33333333333333333333333
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.75 Score=32.96 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
-.+...+...++++.|..-+++.... +-|. .+-..|.+.....|.+++|++.++.....++ .......-.+
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGD 167 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGD 167 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhh
Confidence 34567888899999999999988753 2222 2223456778889999999999999887653 2333455578
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
++...|+.++|..-|+......
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHcc
Confidence 8999999999999999988775
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.20 E-value=3.5 Score=32.65 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=65.4
Q ss_pred CccHHHHHHHHHHHHhcCC------------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 84 VPEEIIFCNVISFYGRARL------------LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
|-|..+|-.++..--..-. .+.-+.++++..+.+ +.+......++..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667788887765433321 345566777776664 556667777777777777777777778877777
Q ss_pred CCCChhHHHHHHHHHHh---cCChhHHHHHHHHHHH
Q 037499 152 VSPDACSYNILMHGCVV---SRRLEDAWKVFDEMLK 184 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 184 (262)
.+.+...|...+..... .-.++....+|.+...
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 66677777777766544 2345566666655544
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.18 E-value=0.14 Score=23.27 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.2
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcC
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKN 31 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~ 31 (262)
.....+...+...|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3456789999999999999998864
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.17 E-value=0.34 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 228 QVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.15 E-value=0.33 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44455555555555555555555443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.11 E-value=3.2 Score=31.97 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQVFA 231 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 231 (262)
+++.....|..+|.+.+|.++.++..+.+ +.+...+..+++.+...|+--.+.+-++++.+ ..|+..+...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 44566778888888888888888888763 45777788888888888887777666665532 346666655544
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.84 E-value=2.3 Score=30.80 Aligned_cols=77 Identities=13% Similarity=-0.038 Sum_probs=61.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhCCHH
Q 037499 133 LTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR---RLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
.+.|+ +.|.+.|-.+...+. .++..-..+...|. ..+.+++..++.+..+. +-.+|+..+..|++.+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 679999999998888 56666666666665 77899999999988864 33788999999999999999999
Q ss_pred HHH
Q 037499 209 EAL 211 (262)
Q Consensus 209 ~a~ 211 (262)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 875
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.80 E-value=0.28 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 230 FASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555444
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.80 E-value=2.3 Score=30.21 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFY 97 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (262)
++.|.+..+...... |.|...++.-..++
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~AL 35 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGAL 35 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHH
Confidence 445555555544432 44555444443333
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.58 E-value=0.051 Score=37.09 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=62.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|-+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~------~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT------SNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS------SSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc------ccccCHHHHHHHHHhcchH
Confidence 4555555666666666666666544344455666666666666555555555541 1112224445555555555
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
+.+.-++.++....- .+..+...++++.|.+++.+ .++...|..++..|...+.
T Consensus 87 ~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 555555544332110 00012233344444422211 2356677777777766554
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.45 E-value=4.6 Score=32.13 Aligned_cols=192 Identities=9% Similarity=0.077 Sum_probs=102.5
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--C-CccHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR--V-VPEEI 88 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~ 88 (262)
.+.+..+.|+++...+....... ..++...|.++... +.++++++...++.....-. + .....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~------------~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE------------DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC------------CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45678889999997777666622 22355666665544 88999999998888776310 0 00111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHH---HHHHh--c-CCCChh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-----CGKIDRMTDLF---QIMEK--Y-VSPDAC 157 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~---~~~~~--~-~~~~~~ 157 (262)
.|........+...+.+..++.+-..... .+......++..... .++++--..++ ..+.. . ......
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~ 147 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAE 147 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHH
Confidence 22222222222222222222222221110 001111111111110 12221111111 11111 1 125567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
+|..++..+.+.|.++.|...+..+...+... ++...-.-+......|+..+|+..++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999988754211 334444455667788999999998887766
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.42 E-value=0.61 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 91 CNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
..+..++...|++++|++.|++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444444444444444433
No 321
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=3.1 Score=29.94 Aligned_cols=89 Identities=18% Similarity=0.049 Sum_probs=52.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-----HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-----TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
...+...+++++|...++..... |....+. .|.+.....|.+|+|.++++..... .........-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---~w~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---SWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---cHHHHHHHHhhhHH
Confidence 45566777777777777766543 1222222 2334556677777777777666532 12222333344567
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 037499 238 CAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~~g 257 (262)
...|+-++|+.-|+...+.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 77777777777777776654
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.24 E-value=0.044 Score=37.44 Aligned_cols=129 Identities=10% Similarity=0.056 Sum_probs=82.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 135 (262)
.++..+.+.+.+.....+++.+... +...+....+.++..|++.+..++..++++... ..-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhc
Confidence 4677888888889999999998875 345667888899999999887777777776221 12334567778888
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499 136 GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (262)
|.+++|.-++.++..... .+..+...++++.|.++..+ .++...|..++..|...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~--------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDE--------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTT--------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHH--------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 888888887776544222 11113345555555533222 2356677777777665543
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.24 E-value=3.5 Score=31.50 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=80.1
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCC--CCCC-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTE--AQPL-KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
..+.-..||..|++.-++-.+.-.... ..+. .-.+.-......=|.++++.++|.+++...-+.-+.. -+.-+.+.
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIl 121 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHH
Confidence 444456778777777655433210000 0000 0001112233445789999999999988766655431 22224446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-----cCCHHHHHHHH
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-----CGKIDRMTDLF 145 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~g~~~~a~~~~ 145 (262)
..-|-.|.+.+.+..+.++-..-.+.--..+...|.+++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66677789999999999988776654324445568887776654 69999999987
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.98 E-value=6.4 Score=32.73 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=90.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 135 (262)
.-|.-....|++-.|-+-+.....+..-.|+.... ....+...|+++.+...+....+. +.....+...++....+.
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhch
Confidence 33445555677776665555544432223444333 334456889999999988776653 234566788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 136 GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
|++++|..+-+.|......++..........-..|-++++.-.++++...+
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999988777777776666666677888999999999887654
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.73 E-value=3.1 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=27.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 99 RARLLEHALQVFDEMSSFNVQRTVKS-FNTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
..++++.+..+++.|.-. .|+..- -..-...+...|++++|..+|+.+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 356666666666666543 232221 1112234456666666666666666543
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.68 E-value=0.44 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=16.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 233 LIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
|..+|...|+.+.|.++++++.+.|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 327
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=91.40 E-value=2.4 Score=28.07 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
+..+-++.+...++.|++......+++|.+.+++..|.++|+-+... ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34555666666677888888888888888888888888888887653 333333455544
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.33 E-value=0.5 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=13.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 197 LIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 197 li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555666666666655544
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.32 E-value=0.88 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=15.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 037499 232 SLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+..++.+.|+.++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666677777777766665
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.29 E-value=2.4 Score=33.47 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=22.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555444332 2244445444555555444444433
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.28 E-value=5.4 Score=30.54 Aligned_cols=123 Identities=8% Similarity=-0.030 Sum_probs=78.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC----CC-Ccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDT----RV-VPE-------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
....+.-..|+..|++.=++-.+.- .. .++ ...+..=|.+++..+++.+++.+.-+--+.--+....+
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI 120 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence 3334444567777766655444311 00 111 12334457889999999998877655543211223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHh-----cCChhHHHHHH
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV-----SRRLEDAWKVF 179 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 179 (262)
....|-.|.+.|+...+.++-..-..... .+...|..++..|.. .|.+++|+++.
T Consensus 121 leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 67778889999999999998877665433 555558877777654 59999998887
No 332
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.14 E-value=4 Score=28.73 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=10.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCH
Q 037499 82 RVVPEEIIFCNVISFYGRARLL 103 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~ 103 (262)
+++|+...+..++..+.+.|++
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH
Confidence 3444444455555555544443
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.07 E-value=0.92 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555666666665555544
No 334
>PF13934 ELYS: Nuclear pore complex assembly
Probab=91.02 E-value=5.2 Score=29.84 Aligned_cols=54 Identities=11% Similarity=0.074 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
++.++...|+...|+.+++...-.. .+......++.. ..++.+.+|..+-+...
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYP 167 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCc
Confidence 4445555566666666665543211 111122222222 44455666655554443
No 335
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.88 E-value=5.4 Score=29.83 Aligned_cols=58 Identities=16% Similarity=0.320 Sum_probs=34.2
Q ss_pred HhcCChhHHHHHHHHHHHC-C-----------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 167 VVSRRLEDAWKVFDEMLKR-R-----------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
...|+...|+.-++.-... | -.|.+.....++..| ..+++++|.+++.++.+. |+.|.
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~l-gysp~ 272 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKL-GYSPE 272 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHc-CCCHH
Confidence 3566666666666655432 1 134555555555443 356777777777777665 66654
No 336
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.57 E-value=0.98 Score=36.40 Aligned_cols=128 Identities=10% Similarity=-0.075 Sum_probs=75.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---cCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hcCC-CCChhhHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKH---DTRV-VPEEIIFCNVISFYGRARLLEHALQVFDEMS----SFNV-QRTVKSFN 126 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~ 126 (262)
.|.+.|.-.|+++.|+...++-.+ +.|- ......+..+.+++.-.|+++.|.+.|..-. +.|- ......+-
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 333333444777777776554322 1111 1223456777777777888888887776543 2231 12234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
+|.+.|.-..++++|+.++.+-... ..-....+-++..+|...|..++|+.+.+.-.
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677777777777777777543221 11445667777778877787777777665544
No 337
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.51 E-value=9.5 Score=32.04 Aligned_cols=179 Identities=9% Similarity=0.074 Sum_probs=126.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.|-....+++..++...++.-+..+-.+|..- .-+-..|..++.+|... ..++-..+|+++.+..+ .++..-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 35667778888999998999898888888874 35667788999999887 77888899999988763 334344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSP------DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGL 201 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~ 201 (262)
...|- .++..++...|.+......| -...|..+... -..+.+....+...+.+. |..--.+.+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55454 48889999999888765443 12356666543 245677777777777665 5555566666677788
Q ss_pred HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 202 CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 202 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
....++++|++++..+.+. -.-|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 8999999999999987763 234554444555443
No 338
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.33 E-value=4.8 Score=28.33 Aligned_cols=135 Identities=17% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 107 LQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.+++..+.+.+++|+...+..+++.+.+.|++.....++. ... +|.......+-.+.. ....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4566677788889999999999999999998766554443 333 555544444433322 233344443334332
Q ss_pred CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 186 RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
. ...+..++..+...|++-+|.++.+..... ..++ ...++++-.+.+|...-..+++-..++
T Consensus 88 -L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 -L---GTAYEEIIEVLLSKGQVLEALRYARQYHKV--DSVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred -h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 013445666777899999999998776321 1222 244566666777766555555555443
No 339
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.27 E-value=4.7 Score=28.09 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=21.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
.+.++.+++..++.-+.--..-.+...++- ...+.+.|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence 334555555555555543211111112222 2223455555555555555544
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=6.2 Score=29.47 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=14.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHh
Q 037499 199 YGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..-...+++.+|+++|+++...
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777888887777553
No 341
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.18 E-value=9.6 Score=33.28 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=15.2
Q ss_pred HHHHHHhhcCChHHHHHhhcC
Q 037499 11 RLASLLRLQKDPKLALQLFKN 31 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~ 31 (262)
.....+.-.|+|+.|++.+-.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh
Confidence 344566778999999999888
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.83 E-value=1.1 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 037499 93 VISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.71 E-value=9.7 Score=30.90 Aligned_cols=177 Identities=13% Similarity=0.026 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT------- 81 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 81 (262)
+..+...|...|+++.|++.|.+.++- ...-+..+..|-.+|..-...|+|..+.....+..+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdY--------CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDY--------CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhh--------hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence 456788899999999999999997554 23445677788888888888999998888887776531
Q ss_pred -CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 82 -RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF-N-----VQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 82 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.+++-...+..+...+.+ ++..|.+.|-..... . +.| |+.+|. .+.+++--++-+--+.+.....-...
T Consensus 225 q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~f 301 (466)
T KOG0686|consen 225 QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLF 301 (466)
T ss_pred HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhH
Confidence 123334444444444333 666666665443321 1 123 333443 33444444443333233222111111
Q ss_pred --CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCchHHHHHHH
Q 037499 154 --PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----RLQPTLVTFGTLI 198 (262)
Q Consensus 154 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li 198 (262)
..+..+..+...| .+++...++++++++.. -+.|.+.+.-.+|
T Consensus 302 lel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 302 LELEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred HhcChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 4455555555554 35677778887777643 1344455444444
No 344
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.69 E-value=3.4 Score=29.87 Aligned_cols=52 Identities=15% Similarity=0.040 Sum_probs=30.7
Q ss_pred hcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 168 VSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
...+.+......+.+.+. ...|+..+|..++.++...|+.++|.+...++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444433333333322 2456777777777777777777777777777764
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.54 E-value=5.1 Score=27.50 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 133 LTCGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
...++.+++..++..|.-..| +...++.. -.+...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence 347899999999999987766 44444444 44568999999999999998875
No 346
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=7.6 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=17.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 233 LIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
+...-...+++.+|+.+|++.....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333456778888999988876653
No 347
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=89.13 E-value=3.9 Score=25.56 Aligned_cols=89 Identities=11% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCCCCCHHHHHHHHhhc-CChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 3 KAKPTSPFRLASLLRLQ-KDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
|+.|.+...+.+.+.+. ++.+...+++..+ ++..|..++..-...+-+...++++.....
T Consensus 1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i-----------------~p~~l~~if~~~l~~~~L~~il~~l~~~~~-- 61 (94)
T PF13877_consen 1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSI-----------------PPDSLPKIFKNSLEPEFLSEILEALNEHFI-- 61 (94)
T ss_pred CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhC-----------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHc--
Confidence 56677777777777776 7777777777776 555666666543333444444444443322
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDE 112 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (262)
+.+......++..+.+.++++-+...+..
T Consensus 62 --~~~~~~i~~~L~~L~~~~RF~l~~~fl~~ 90 (94)
T PF13877_consen 62 --PEDPEFIFEILEALSKVKRFDLAVMFLSS 90 (94)
T ss_pred --cCCHHHHHHHHHHhcCCCCHHHHHHhcCH
Confidence 12233445556666677777666655443
No 348
>PRK10941 hypothetical protein; Provisional
Probab=88.97 E-value=8.9 Score=29.48 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHHHHHH
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLC 202 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~ 202 (262)
.+.+-.+|.+.++++.|+++.+.+....+.++.-+.--.-.|.+.|.+..|..-++...+.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 45566778888999999999988888888777777777778888999998888888887652 3455555555555443
No 349
>PRK09687 putative lyase; Provisional
Probab=88.73 E-value=9.5 Score=29.53 Aligned_cols=218 Identities=14% Similarity=0.079 Sum_probs=119.5
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC---C-hhHHHHHHHHHHh
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK---M-FDEVQQILHQLKH 79 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~a~~~~~~~~~ 79 (262)
++.......+..+...|..+....+.+ +... +|...-...+.++++.| . ..++...+..+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~~-------------~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIE-LCSS-------------KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL 100 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHH-HHhC-------------CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh
Confidence 444445556666666665443333333 3121 24444444455555543 2 4677777776643
Q ss_pred cCCCCccHHHHHHHHHHHHhcCCH-----HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499 80 DTRVVPEEIIFCNVISFYGRARLL-----EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154 (262)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (262)
. .++..+-...+.+++..+.. ..+.+.+..... .++..+-...+.++.+.++ .+++..+-.+.+. +
T Consensus 101 ~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--~ 171 (280)
T PRK09687 101 E---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD--P 171 (280)
T ss_pred c---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC--C
Confidence 2 25566566666666655421 233444433333 3455666667777777776 4566666666554 4
Q ss_pred ChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499 155 DACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 233 (262)
+..+-...+.++.+.+ +...+...+..+... ++..+-...+.++.+.|+. .|+..+-+..+. ++ .....
T Consensus 172 ~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a 241 (280)
T PRK09687 172 NGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLI 241 (280)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHH
Confidence 4444455555555542 234566666655543 4666666677777777774 455555444442 22 23456
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 037499 234 IKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+.++...|.. +|...+..+.+
T Consensus 242 ~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 242 IEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHhcCCH-hHHHHHHHHHh
Confidence 7777888774 67777777765
No 350
>PRK09687 putative lyase; Provisional
Probab=88.63 E-value=9.7 Score=29.50 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHhcCC
Q 037499 226 DAQVFASLIKGLCAVGE 242 (262)
Q Consensus 226 ~~~~~~~l~~~~~~~g~ 242 (262)
|..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444444444444
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.45 E-value=7.2 Score=27.78 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
+++|...|++.... .|+..+|+.-+.... +|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 44455555555433 666666666655542 2444444444443
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.05 E-value=10 Score=32.46 Aligned_cols=114 Identities=13% Similarity=0.101 Sum_probs=73.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
.|-..+.|...-.+...|+...|.+.+.......-.........|.+.+.+.|...+|..++.+........+-++..+.
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 34333333333334456888888888876654321112234455667777778888888888877766556677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHH
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLI 198 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 198 (262)
+++.-..++++|++.|++..+... -+...-+.|.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~ 717 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTT-KCPECENSLK 717 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence 888888899999999888877632 2344444443
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.79 E-value=2.5 Score=25.35 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred hhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
...+.++|+..|....+...-.|+ -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666654222222 12455666666666666666554
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.78 E-value=33 Score=34.68 Aligned_cols=152 Identities=8% Similarity=0.023 Sum_probs=101.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
++..+-.+.+.+.+|+..+++-.... .-......+..+...|+..+++|....+...... .|+ .+ .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHh
Confidence 56667788899999999999842110 0122344566666699999999998888875222 233 22 33445677
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH-HHHHHHHhhCCHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG-TLIYGLCLELRVDEALKL 213 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~ 213 (262)
.|++..|...|+.+...+++...+++-++......|.++.+....+-.... ..+....++ .-+.+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999999988887888888887777788888777766655543 122222222 223444666777766555
Q ss_pred H
Q 037499 214 K 214 (262)
Q Consensus 214 ~ 214 (262)
.
T Consensus 1541 l 1541 (2382)
T KOG0890|consen 1541 L 1541 (2382)
T ss_pred h
Confidence 3
No 355
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=87.51 E-value=3.1 Score=23.73 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
+...++++.++.. .-|..-.-.+|.++...|++++|.+++.++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444432 12333334455555555555555555555543
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.46 E-value=5 Score=30.38 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYN----VKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
....+...|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.+..+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334566778899999999999998865432 23455667778888889999888887766654
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.18 E-value=7.6 Score=26.61 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRR-LEDAWKVFDEMLKRRLQPTLVTFGTL 197 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~l 197 (262)
.+.++.-....+.+...+.+++.+... +..+...|.+++.+.++... .-.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444445555555554444221 11445556666666655544 34456666666665566666666666
Q ss_pred HHHHHh
Q 037499 198 IYGLCL 203 (262)
Q Consensus 198 i~~~~~ 203 (262)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 665543
No 358
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.12 E-value=11 Score=28.44 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|.....+|....+++.|...+.+..+ +...+...|. ..+.++.|.-+.+++.+. +--+..|+....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 34555566666677777777776666654 2333333222 233445555555555542 222345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---C--CCCchHHHHHHHHHHHhhC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR---R--LQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g 205 (262)
.|..+|..+-|-..+++.-+. ...-++++|+++|++.... + .+.-...+...-+.+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 777777776666666554321 1334455566666554331 1 0111233444556667777
Q ss_pred CHHHHHHHHHHHHHh---cCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 206 RVDEALKLKEDMMRV---YNVKPDA-QVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 206 ~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
++++|-..+.+-..- ..-.++. ..|...|-.|.-..++..|...++.-
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 777776665543211 0112222 23445555556666777777777654
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.86 E-value=4.8 Score=29.08 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
.|++.+|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.68 E-value=3.4 Score=24.85 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 037499 99 RARLLEHALQVFDEMSSFNVQRT--VKSFNTLLNAMLTCGKIDRMTDL 144 (262)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~ 144 (262)
..++.++|+..|....+.-..+. -.++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665554321211 13445556666666666665554
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.57 E-value=39 Score=34.24 Aligned_cols=154 Identities=14% Similarity=0.025 Sum_probs=108.3
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.|..+-.+.+.+.+|+..++.-... ..........|-.+...|+.-+++|.+.-+...-.. .|+. +
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~--------ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~ 1453 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRST--------EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y 1453 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccc--------cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H
Confidence 5666788899999999999984111 011122334455555599999999999888875222 1222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHhc
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL-MHGCVVS 169 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~~~~~~~ 169 (262)
.-|-.....|++..|...|+.+.+.+ ++...+++-++......|.++.++-..+.......+....|+++ +.+--+.
T Consensus 1454 -~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1454 -QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred -HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 33445567899999999999999886 66678888888888888888888887776665555444445444 5555788
Q ss_pred CChhHHHHHHH
Q 037499 170 RRLEDAWKVFD 180 (262)
Q Consensus 170 g~~~~a~~~~~ 180 (262)
++++.....+.
T Consensus 1532 ~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1532 SQWDLLESYLS 1542 (2382)
T ss_pred cchhhhhhhhh
Confidence 88888777766
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.51 E-value=24 Score=31.78 Aligned_cols=26 Identities=27% Similarity=0.162 Sum_probs=21.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 232 SLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
.|+......|+.++|...++++....
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 56778888999999999988886543
No 363
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.43 E-value=25 Score=31.76 Aligned_cols=195 Identities=10% Similarity=0.013 Sum_probs=103.1
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCccHHHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD----TRVVPEEIIFC 91 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 91 (262)
....|+++.|.++-+.....-. .....+.+..+..+..+..-.|++++|..+..+..+. ........+..
T Consensus 468 al~~~~~e~a~~lar~al~~L~------~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLP------EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcc------cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3457888888888776644311 2234457778888888888899999999988777664 11111222222
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHhhcCC------CCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCChh---HH
Q 037499 92 NVISFYGRARLL--EHALQVFDEMSSFNV------QRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDAC---SY 159 (262)
Q Consensus 92 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~------~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~---~~ 159 (262)
.-...+...|+. ++.+..|........ .+-..++..++.++.+.. ...++..-++--....+.... .+
T Consensus 542 ~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~ 621 (894)
T COG2909 542 QQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLAL 621 (894)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHH
Confidence 223345566733 333344443332110 112334555555555521 112222222222222221111 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCC----chHHHHHHHHH--HHhhCCHHHHHHHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQP----TLVTFGTLIYG--LCLELRVDEALKLKED 216 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~--~~~~g~~~~a~~~~~~ 216 (262)
..++......|++++|...+.++......+ +..+-...++. -...|+...+.....+
T Consensus 622 ~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 622 SMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 367788888999999999999887653333 22221222222 2345777776665544
No 364
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.11 E-value=15 Score=29.08 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=74.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037499 44 LKPFRYNLLHYDLIITKLGRAKM------------FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFD 111 (262)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 111 (262)
+...+.|+.+|-.++..--..-. .+.-+.++++..+. -+.+.......+..+.+..+.++..+-++
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34456789999998876555432 45667788888775 35677788888999999999999999999
Q ss_pred HHhhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 037499 112 EMSSFNVQRTVKSFNTLLNAMLT---CGKIDRMTDLFQIME 149 (262)
Q Consensus 112 ~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~ 149 (262)
++.... +-+...|...|..... .-.++....+|.+..
T Consensus 90 ~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 90 ELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 998875 4567788887776544 234667777665543
No 365
>PRK10941 hypothetical protein; Provisional
Probab=85.88 E-value=14 Score=28.43 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
..+.+-.+|.+.++++.|+++.+.+..... .++.-+.--.-.|.+.|.+..|..=++...+...-.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 346778889999999999999999998632 2444455455568999999999999999888756677777777777766
Q ss_pred Hhc
Q 037499 238 CAV 240 (262)
Q Consensus 238 ~~~ 240 (262)
...
T Consensus 262 ~~~ 264 (269)
T PRK10941 262 EQK 264 (269)
T ss_pred hhc
Confidence 544
No 366
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.71 E-value=14 Score=30.91 Aligned_cols=108 Identities=11% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc---C-C-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCCc---
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKY---V-S-----PDACSYNILMHGCVVSRRLEDAWKVFDEMLK-------RRLQPT--- 190 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~---~-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~~~--- 190 (262)
+.+.-.|++.+|.+++....-. + . .....||.+.-.+.+.|.+..+..+|....+ .|.+|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455679999999988654221 1 1 2345568888888888998888888877764 354442
Q ss_pred --------hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499 191 --------LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240 (262)
Q Consensus 191 --------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 240 (262)
..+||.-+ .|...|++-.|.+.|.+..+. +..++..|..|..+|...
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 34455444 567899999999999999874 566888999999999754
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.71 E-value=15 Score=28.55 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++....+.|..+|.+.+|.++.++... --+.+...+-.|+..+...|+--.+..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 455667889999999999999999975 3355788899999999999998888877777643
No 368
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.43 E-value=15 Score=28.25 Aligned_cols=184 Identities=12% Similarity=0.143 Sum_probs=111.8
Q ss_pred hcCChHHHHHhhcCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC--CccHHHHH
Q 037499 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFR--YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--RV--VPEEIIFC 91 (262)
Q Consensus 18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~ 91 (262)
+..++++|+.-|+...+. .|.+ ..-.+...++....+.+++++.+..+.++..-- .+ .-+..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlel---------EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN 109 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLEL---------EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSIN 109 (440)
T ss_pred cccCHHHHHHHHHHHHhc---------ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 456889999999887553 2322 344566778999999999999999998886410 11 12345567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhc-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------C
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSF-NVQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------------P 154 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------~ 154 (262)
.++..-....+.+.-.++|+.-.+. .-..+. .|-+.|...|...|.+.+..+++.++..+.. .
T Consensus 110 ~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ 189 (440)
T KOG1464|consen 110 SILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ 189 (440)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence 7777666666666655555432211 001111 2335677788888888888888888765432 1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHH-----HhhCCHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGL-----CLELRVDEAL 211 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~-----~~~g~~~~a~ 211 (262)
-...|..-|..|....+-.+-..++++...- .--|.+.+.. .|+-| .+.|++++|-
T Consensus 190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHH
Confidence 1345666677777777767777777766543 2234444333 33333 3456666654
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.18 E-value=3.6 Score=33.87 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
+..+...++++.|+.++.++.+. .||. ..|..-..++.+.+++..|+.=+.+..+.. +.....|---..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 34444555666666666666553 2432 223333355556666666665555555443 111222222233334444
Q ss_pred CHHHHHHHHHHHHh
Q 037499 137 KIDRMTDLFQIMEK 150 (262)
Q Consensus 137 ~~~~a~~~~~~~~~ 150 (262)
++.+|+..|+....
T Consensus 87 ~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhhh
Confidence 45555555555443
No 370
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=84.32 E-value=4.9 Score=22.90 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=6.7
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 037499 129 LNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~ 146 (262)
|.+|...|++++|.+++.
T Consensus 30 I~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333344444444443333
No 371
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.76 E-value=25 Score=29.56 Aligned_cols=195 Identities=9% Similarity=0.085 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CCHH-HHHHHHHHHhhcCCCCChhhHH
Q 037499 50 NLLHYDLIITKLGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLE-HALQVFDEMSSFNVQRTVKSFN 126 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~-~a~~~~~~~~~~~~~~~~~~~~ 126 (262)
....|..+..++....... .|..+-.+ ++..+...|..-+....+. .+++ .-.+.|..+...-..+....|+
T Consensus 357 ~~~~ys~~~l~~~t~~~~r~~a~~l~~e-----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~ 431 (568)
T KOG2396|consen 357 LYKQYSVLLLCLNTLNEAREVAVKLTTE-----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWA 431 (568)
T ss_pred hHHHHHHHHHHHhccchHhHHHHHhhHH-----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4556666666665554432 23333222 3445566665555544422 2332 2233445555432233344444
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH--
Q 037499 127 TLL-NAMLTCGKIDRMTDLFQIMEKYVSPDACSY-NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC-- 202 (262)
Q Consensus 127 ~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-- 202 (262)
+.. ..+......+. ++......+.++..++ +.++..+-..|...+|...+..+... .+|+...|..+|+.=.
T Consensus 432 s~~~~dsl~~~~~~~---Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~ 507 (568)
T KOG2396|consen 432 SASEGDSLQEDTLDL---IISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQ 507 (568)
T ss_pred HHhhccchhHHHHHH---HHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhH
Confidence 443 11111111122 2222333333554443 56777788888888888888888876 5667777777775422
Q ss_pred hhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+-+...+..+++.+...+| .|+..|--.+.-=...|..+.+-.++-+..+
T Consensus 508 ~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 508 ESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 12347778888888888777 5555666555555577777777777666543
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=83.55 E-value=14 Score=26.48 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHhcCCCCc-cHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 67 FDEVQQILHQLKHDTRVVP-EEIIFC-----NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
.+.|+.+|+.+.+....+- -..... ..+-.|.+.|.+++|.+++++... .|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 4568888888887542110 111122 233467788888888888887776 3444333443333333
No 373
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.00 E-value=34 Score=30.49 Aligned_cols=155 Identities=13% Similarity=0.089 Sum_probs=90.7
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
=+..+.+.+.+++|+++-+....+. +.+ .-...+..++..+...|++++|-.+.-.|... +..-|-
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--------~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe 427 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--------ERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWE 427 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--------ccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHH
Confidence 4567889999999999999885431 111 13467788899999999999998888887653 345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH---HHHHH-----------HHHHhc---CCC
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLF-----------QIMEKY---VSP 154 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~-----------~~~~~~---~~~ 154 (262)
..+..+...++......+ +....-..+...|..++..+.. .+... .+..| +..... ...
T Consensus 428 ~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se 503 (846)
T KOG2066|consen 428 LWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE 503 (846)
T ss_pred HHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc
Confidence 555555555554332221 2211111244566666666655 11111 11111 111000 012
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
+...-..|+..|...++++.|..++-...+
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 223334588888889999999888876654
No 374
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=82.42 E-value=8.5 Score=33.44 Aligned_cols=82 Identities=16% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHhcCCCCccH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDE--VQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~ 87 (262)
.+|..+|...|++.++.++++.+...+ ++.+.-...||..++...+.|.++- +.+-..+..+...+.-|.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~--------~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~ 103 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHN--------KGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDS 103 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC--------cCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcc
Confidence 478999999999999999999998774 4667778889999999999997653 222233333322345566
Q ss_pred HHHHHHHHHHHh
Q 037499 88 IIFCNVISFYGR 99 (262)
Q Consensus 88 ~~~~~l~~~~~~ 99 (262)
.||..++.+...
T Consensus 104 ~t~all~~~sln 115 (1117)
T COG5108 104 LTYALLCQASLN 115 (1117)
T ss_pred hHHHHHHHhhcC
Confidence 777776665443
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.27 E-value=3.4 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=7.4
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 037499 94 ISFYGRARLLEHALQVFDE 112 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~ 112 (262)
..++...++++.|...|+.
T Consensus 8 a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333333444444443333
No 376
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.37 E-value=6 Score=34.16 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHcCCCC
Q 037499 240 VGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 240 ~g~~~~a~~~~~~m~~~g~~p 260 (262)
.|++.+|.+.+-.+.+..+-|
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~P 528 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAP 528 (566)
T ss_dssp ---------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCc
Confidence 356666666666655555544
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.32 E-value=5.4 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
+.-++.+.|++++|.+..+.+.+. .|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~---eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI---EPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH---TTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh---CCC
Confidence 344677788888888888877754 554
No 378
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.05 E-value=32 Score=28.95 Aligned_cols=202 Identities=10% Similarity=0.039 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHhcC------ChhHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 037499 48 RYNLLHYDLIITKLGRAK------MFDEVQQILHQLKHDTRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (262)
-++...|+..|..|...- .+...+.+|+...+..+..++ ..-|..+...+...+... ++-..+...++..
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r---~~a~~l~~e~f~~ 388 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR---EVAVKLTTELFRD 388 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---HHHHHhhHHHhcc
Confidence 357778888887777652 455667777777665445444 345555555555555432 2223333333455
Q ss_pred ChhhHHHHHHHHHhcC-CHH-HHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCC-hhH-HH-HHHHHHHHCCCCCchHHH
Q 037499 121 TVKSFNTLLNAMLTCG-KID-RMTDLFQIMEKYVS-PDACSYNILMHGCVVSRR-LED-AW-KVFDEMLKRRLQPTLVTF 194 (262)
Q Consensus 121 ~~~~~~~ll~~~~~~g-~~~-~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~-~~~-a~-~~~~~m~~~~~~~~~~~~ 194 (262)
+...|..-+....+.. ++. .-.++|........ +....|+... .|+ ++. .+ .++...... ..|+..++
T Consensus 389 s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl 462 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTL 462 (568)
T ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeeh
Confidence 6666666666655332 222 12233344443322 4455555554 222 221 11 222333333 34555554
Q ss_pred -HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHc-CCCC
Q 037499 195 -GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA--VGELSLALGFKEEMVRN-KIEM 260 (262)
Q Consensus 195 -~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~-g~~p 260 (262)
+.++..+.+.|-..+|.+.+..+.. -.+|+...|.-+|+.=.. .-+..-+.++++.|... |-.|
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 4677888899999999999999976 445678888888764321 22377788888887654 5443
No 379
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=80.89 E-value=26 Score=27.81 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCChhHH--HHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCch
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYV----SPDACSY--NILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTL 191 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 191 (262)
++...-+.++.++|++.++++.+.- .|+.+.| +.+.+.+...|+..++.+.+.+..+ .|++|++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 3444445556667776666664432 2444444 3345555566777777777666665 4555543
No 380
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.86 E-value=5.7 Score=30.78 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCccHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 83 VVPEEII-FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 83 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
+.|+... |+..|....+.||+++|++++++.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3344443 457778888888888888888888887754433333
No 381
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.70 E-value=2.6 Score=28.24 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=24.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
...|.-..|..+|+.|.+.|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 455677788999999999988877 56777654
No 382
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.60 E-value=19 Score=31.85 Aligned_cols=120 Identities=10% Similarity=0.099 Sum_probs=78.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPD--ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
+.--|+.++|..+.++|.....|- ..-..++..+|+-.|+-....+++.-.... +..|+.-+..+.-++.-..+++.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 445567778888888876654322 223446677888888887777777765554 45566666666666777788888
Q ss_pred HHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 210 ALKLKEDMMRVYNVKPDAQ--VFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
...+.+-+.+. ..|.+. +--+|.-+|...|+ .+|..+++-|.+
T Consensus 590 ~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 590 LPSTVSLLSES--YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred chHHHHHHhhh--cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 88888777663 344433 33344456666666 578888888865
No 383
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.39 E-value=38 Score=29.32 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=109.9
Q ss_pred hHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------cCCCCccHHH
Q 037499 22 PKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITK-----LGRAKMFDEVQQILHQLKH-------DTRVVPEEII 89 (262)
Q Consensus 22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~ 89 (262)
...|.+.++.....+ +...-..+..+ +....+.+.|+..|+...+ . + ....
T Consensus 228 ~~~a~~~~~~~a~~g-------------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a 290 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPA 290 (552)
T ss_pred hhHHHHHHHHHHhhc-------------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCcc
Confidence 456777887774442 33333333333 3345789999999999876 3 3 2334
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 90 FCNVISFYGRAR-----LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT-CGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 90 ~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
...+..+|.+.. +.+.|..+|...-+.| .|+....-..+..... ..+...|.++|...-..|.....-+..++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 566777777643 6788999999999988 4555443333332222 24578999999999888776655555444
Q ss_pred HHHH--hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 164 HGCV--VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 164 ~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.... ...+...|..++++..+.| .|...--...+..+.. ++++.+.-.+..+..
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 3333 4457889999999999887 3332222222333333 666666555555443
No 384
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.17 E-value=15 Score=24.51 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499 140 RMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFD 180 (262)
Q Consensus 140 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 180 (262)
.+.++|..|...+. ..+..|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444333 333444444444444444444444443
No 385
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.03 E-value=54 Score=30.91 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=95.9
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCC----------------CCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNT----------------EAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQ 71 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~ 71 (262)
+.++.+|...|...+|+..|.+....-+.. -..+....++. ..-|..+++.+-+.+..+.+.
T Consensus 924 fmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 924 FMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred HhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344555778888888888887764321111 01111122222 344677888888888888888
Q ss_pred HHHHHHHhcCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh----hHHHHHHHHHhcCCHH----
Q 037499 72 QILHQLKHDTRVVPE----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK----SFNTLLNAMLTCGKID---- 139 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~---- 139 (262)
++-....+. ++++ ..+++++.+.....|.+-+|.+.+-. .||.. ...-++..++.+|.++
T Consensus 1004 QlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1004 QLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence 887777663 3333 34566777777777877777655432 23333 3444555666666543
Q ss_pred --------HHHH-HHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHH
Q 037499 140 --------RMTD-LFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVF 179 (262)
Q Consensus 140 --------~a~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 179 (262)
+... +++..-...+ .....|+.+-..+...+++.+|-.+.
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 4444 3333333333 44556777777777888887766554
No 386
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.02 E-value=4.2 Score=32.06 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=58.2
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037499 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV 178 (262)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 178 (262)
..|.++.|++.|-..+... ++....|..-.+++.+.++...|++=+.......+.+..-|-.--.+..-.|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 4566777777777666655 555566666666667777777777666666665554444454445555566777777777
Q ss_pred HHHHHHCCCCCch
Q 037499 179 FDEMLKRRLQPTL 191 (262)
Q Consensus 179 ~~~m~~~~~~~~~ 191 (262)
|....+.+..+..
T Consensus 205 l~~a~kld~dE~~ 217 (377)
T KOG1308|consen 205 LALACKLDYDEAN 217 (377)
T ss_pred HHHHHhccccHHH
Confidence 7777766554433
No 387
>PRK09857 putative transposase; Provisional
Probab=79.95 E-value=27 Score=27.33 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
+..++....+.++.++..++++.+.+. .+......-++.+-+.+.|..+++.++..+|...|+.+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 455666556677777777777777543 33344445567777777787788888999999888864
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.84 E-value=13 Score=28.19 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cC-CCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSS----FN-VQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.|...|..... ..........+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.
T Consensus 163 ~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 163 KAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555554433 233445556788889999999999999998752 23 23345567778888889999998887
Q ss_pred HHHHH
Q 037499 144 LFQIM 148 (262)
Q Consensus 144 ~~~~~ 148 (262)
+--++
T Consensus 240 ~~leL 244 (247)
T PF11817_consen 240 TSLEL 244 (247)
T ss_pred HHHHH
Confidence 76554
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=79.83 E-value=21 Score=31.25 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCchHHHHHH
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLE------DAWKVFDEMLKRRLQPTLVTFGTL 197 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 197 (262)
+|+.+|..+|++-.+..+++.+..... .-...+|..|+...+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788999999999999999998876654 33456788888888998864 3444444444 44578888888
Q ss_pred HHHHHhhCCHHHHHHHHHHHH
Q 037499 198 IYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 198 i~~~~~~g~~~~a~~~~~~~~ 218 (262)
+.+-...-.-....-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544333333333444443
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.72 E-value=13 Score=23.65 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
.+...|++++|+.+.+.+ ..||...|.++... +.|-.++...-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL---CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC---CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344555555555554433 12555555544433 4444444444444444443
No 391
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.63 E-value=13 Score=23.64 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.++|..+-+.+...+.....+--+-+..+...|++++|..+.+.+ ..||...|-.|- -.+.|--+.+..-+.++
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 456666666655543333333344456677889999998887765 467888777663 35777777777777677
Q ss_pred HHhcCCCCCHHHH
Q 037499 218 MRVYNVKPDAQVF 230 (262)
Q Consensus 218 ~~~~~~~p~~~~~ 230 (262)
... -.|....|
T Consensus 95 a~s--g~p~lq~F 105 (115)
T TIGR02508 95 AAS--GDPRLQTF 105 (115)
T ss_pred HhC--CCHHHHHH
Confidence 542 34444444
No 392
>PHA02875 ankyrin repeat protein; Provisional
Probab=79.34 E-value=26 Score=28.74 Aligned_cols=13 Identities=0% Similarity=0.174 Sum_probs=6.1
Q ss_pred HHHHHHHcCCCCC
Q 037499 249 FKEEMVRNKIEMD 261 (262)
Q Consensus 249 ~~~~m~~~g~~pd 261 (262)
+.+-+.+.|..|+
T Consensus 217 iv~~Ll~~gad~n 229 (413)
T PHA02875 217 IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHCCcCcc
Confidence 3444445555543
No 393
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=79.20 E-value=21 Score=25.79 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHH-HHHhcCC--HHHHHHHHHHHHhcCCCCh
Q 037499 93 VISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLN-AMLTCGK--IDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~-~~~~~g~--~~~a~~~~~~~~~~~~~~~ 156 (262)
.+......|++++|.+-++++.+. .++.-...|..+.. +++..+. +-+|..++........|+.
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~ 103 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSP 103 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCH
Confidence 344455678888888877776432 01112234455544 5566554 5566666766665544443
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.68 E-value=45 Score=29.24 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=118.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCCChh--
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYG-RARLLEHALQVFDEMSSFNVQRTVK-- 123 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 123 (262)
.+...|..+|. .|++.++-+.+...++|... ++-.+...+. ...+++.|+..+++.....-.++..
T Consensus 28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 36677777775 46677777775445555543 4555666655 6789999999999875433222221
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----hhHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCch
Q 037499 124 ---SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD----ACSYNIL-MHGCVVSRRLEDAWKVFDEMLKRR---LQPTL 191 (262)
Q Consensus 124 ---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~ 191 (262)
....++..+.+.+... |...+++..+.-. .. ...|.-+ +..+...+++..|.+.++.+...- ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2345567777777766 8888887654432 11 1222222 223333489999999999887642 23344
Q ss_pred HHHHHHHHHHH--hhCCHHHHHHHHHHHHHhc-C-------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 037499 192 VTFGTLIYGLC--LELRVDEALKLKEDMMRVY-N-------VKPDAQVFASLIKGLC--AVGELSLALGFKEEMV 254 (262)
Q Consensus 192 ~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~-~-------~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 254 (262)
.++-.++.+.. +.+..+++.+.++++.... + -.|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444544433 4566777777777764321 1 1345667777777554 5777777777666554
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=78.60 E-value=5.3 Score=18.46 Aligned_cols=12 Identities=8% Similarity=0.332 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 037499 139 DRMTDLFQIMEK 150 (262)
Q Consensus 139 ~~a~~~~~~~~~ 150 (262)
+.|..+|+++..
T Consensus 4 ~~~r~i~e~~l~ 15 (33)
T smart00386 4 ERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 396
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.38 E-value=30 Score=26.94 Aligned_cols=160 Identities=16% Similarity=0.122 Sum_probs=93.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CChhHHH
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVK-------SFNTLLNAMLTCGKIDRMTDLFQIMEKY----VS-PDACSYN 160 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~ 160 (262)
+.+-..+.+++++|+..+.++...|...+.. +...+...|.+.|+...--+...+..+. .. .......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455567788888888888888777665543 4455677888888877665555443322 11 3344455
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cCCCCCHHHHH
Q 037499 161 ILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTL-----VTFGTLIYGLCLELRVDEALKLKEDMMRV---YNVKPDAQVFA 231 (262)
Q Consensus 161 ~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~~~ 231 (262)
+++..+... ..++....+.....+...+-.. ..=..++..+.+.|.+.+|+.+...+... ..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 566655433 3456666666665543211111 12234677788889998888776554432 25566665544
Q ss_pred HH-HHHHHhcCChhHHHHHHHH
Q 037499 232 SL-IKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 232 ~l-~~~~~~~g~~~~a~~~~~~ 252 (262)
.+ -.+|....++.++..-+..
T Consensus 169 llESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHH
Confidence 33 2356666666655554433
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.22 E-value=17 Score=24.22 Aligned_cols=38 Identities=8% Similarity=0.217 Sum_probs=16.1
Q ss_pred HHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 112 EMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 112 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
.+....+.|++.+...-+.++.+.+++.-|.++|+-++
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444433
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=78.02 E-value=14 Score=22.83 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=16.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
..|+.+.|.+++..+. .| +..|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 4455555555555554 32 224444555544444433
No 399
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=78.02 E-value=28 Score=26.40 Aligned_cols=227 Identities=9% Similarity=0.076 Sum_probs=137.7
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCccHHHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVPEEIIFCN 92 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ 92 (262)
-.-|-.|+++.+++.++.+. ....|...+...+.-.++.|+++...-+|.+...+.. +...+.+...
T Consensus 18 ~~~CLNr~Fd~vL~~~R~~p------------~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCD 85 (267)
T PF05476_consen 18 YLQCLNREFDDVLAELRQIP------------VDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCD 85 (267)
T ss_pred HHHHhhhhHHHHHHHHHcCc------------HhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHH
Confidence 34456899999999999983 3456888888888899999999999999999887644 2334455667
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHhhcCCC-CC--hhhH---HHHHHHHHhcC----CHHHHHHHH-HHHHhcCCC----
Q 037499 93 VISFYGRARL---LEHALQVFDEMSSFNVQ-RT--VKSF---NTLLNAMLTCG----KIDRMTDLF-QIMEKYVSP---- 154 (262)
Q Consensus 93 l~~~~~~~~~---~~~a~~~~~~~~~~~~~-~~--~~~~---~~ll~~~~~~g----~~~~a~~~~-~~~~~~~~~---- 154 (262)
+.+.+...|+ +++....|+.+-..+.. +. ..-| ..-+.++++.- .+.|-.++| +.|...-++
T Consensus 86 i~nlal~~~k~fip~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt~~~t~F~EKWkvfLedmDn~Lp~~~~f 165 (267)
T PF05476_consen 86 IGNLALHEGKYFIPSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGTMHKTTFREKWKVFLEDMDNTLPPQYPF 165 (267)
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhccCCCCCce
Confidence 7777777766 56777777777655522 22 2223 33466777643 244444444 566544332
Q ss_pred ChhHHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCchHHHHHHHHHHHhh--CCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLED-AWKVFDEMLKRRLQPTLVTFGTLIYGLCLE--LRVDEALKLKEDMMRVYNVKPDAQVFA 231 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~ 231 (262)
...-|-.+-.+.. .-+-+. +.-+|.+ .+.++. |..|...++++..-+ ...+.=+++|++..+.+.--+=..+..
T Consensus 166 rVRDFP~Lt~Sl~-~~d~~~l~~~Lf~~-~~i~Ik-N~~tlpLLLNmiLlQ~~~~~~~Ki~lF~~F~~~~~sl~l~DSi~ 242 (267)
T PF05476_consen 166 RVRDFPYLTKSLN-QTDEDTLAKLLFTD-NKITIK-NPSTLPLLLNMILLQPEFSLDFKIRLFKRFLESHPSLDLDDSIE 242 (267)
T ss_pred eecccHHHHHHHh-cccHHHHHHHHhhc-CCcccc-CCCcHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCCCchhHHH
Confidence 3344555555543 222232 2223333 222333 666777777665544 344555688999887642222234556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037499 232 SLIKGLCAVGELSLALGFKEEMVRNKIE 259 (262)
Q Consensus 232 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 259 (262)
.|+.-| +-.+..++.+-+.+.|+.
T Consensus 243 IL~~~c----~~y~~~~L~~~~~~~~i~ 266 (267)
T PF05476_consen 243 ILFHRC----NGYRISELLQFVRERGIT 266 (267)
T ss_pred HHHHHc----chHHHHHHHHHHHHccCC
Confidence 666665 455666666666666653
No 400
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.62 E-value=25 Score=25.97 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCCC----C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 103 LEHALQVFDEMSSFNVQR----T-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~----~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
...|.+.|.+..+..-.| + ....-.+.....+.|+.++|.+.|..+...+.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 455666666655432121 1 12223344455666777777777777766544
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.51 E-value=28 Score=26.26 Aligned_cols=119 Identities=10% Similarity=-0.008 Sum_probs=77.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcC
Q 037499 59 TKLGRAKMFDEVQQILHQLKHDTRVVPEE-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK-SFNTLLNAMLTCG 136 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g 136 (262)
+.|....+++.|+..+.+... +.|+. .-|+.-+-++.+..+++.+.+--.+.++. .||.. ..-.+..+.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred ccccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhc
Confidence 455666778888888777765 35666 44567778888888888888777777664 45543 3444556677788
Q ss_pred CHHHHHHHHHHHHhc----CC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 137 KIDRMTDLFQIMEKY----VS-PDACSYNILMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 182 (262)
.+++|+..+.+.... .. +-...+..|..+--+.-...+..++.++.
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888998888776332 22 34445566666544444445555555544
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.48 E-value=47 Score=28.82 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (262)
.|..-+..+..+++.. ....+.+...-+ .+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 3444444444444322 444455544444 6666667777888888888888887777655422 2345556666677
Q ss_pred hhCCHHHHHHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMR 219 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~ 219 (262)
++|+...+..+.+.+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777666666655553
No 403
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.38 E-value=38 Score=27.71 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
...+..+...|..+|+++.|++.|.+..+.- .+..+..|..+|..-...|+|.....+..+.+..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3456778889999999999999999876542 1223345666666777788888888877777654
No 404
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=77.34 E-value=24 Score=27.63 Aligned_cols=70 Identities=14% Similarity=0.358 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------cCChhH
Q 037499 176 WKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA----------VGELSL 245 (262)
Q Consensus 176 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 245 (262)
.++++.+.+.++.|.-..+..+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|+. .|++.-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578888888899999999888887888888899999999999763 2337777777764 356655
Q ss_pred HHHHHH
Q 037499 246 ALGFKE 251 (262)
Q Consensus 246 a~~~~~ 251 (262)
.+++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 555544
No 405
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.17 E-value=59 Score=29.79 Aligned_cols=189 Identities=14% Similarity=0.040 Sum_probs=107.1
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCc
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF--DEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~ 85 (262)
-+..|+..|...|+.++|++++........ .....-...+-.++.-+.+.+.- +...+.-....... -..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-------~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~-p~~ 577 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-------DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN-PEA 577 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-------ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC-chh
Confidence 467899999999999999999999865420 01111222333456555555554 55555555554431 000
Q ss_pred cHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHH-
Q 037499 86 EEIIFC------------NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------GKIDRMTDL- 144 (262)
Q Consensus 86 ~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~- 144 (262)
...++. ..+-.|......+.+..+++.+....-.++....+.++..|++. ++-+++.+.
T Consensus 578 gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 578 GIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT 657 (877)
T ss_pred heeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh
Confidence 001111 12334566778888899999988766566777778887777643 122233333
Q ss_pred ----HHHHHhc-C----------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------------CCCCchHHHHH
Q 037499 145 ----FQIMEKY-V----------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-------------RLQPTLVTFGT 196 (262)
Q Consensus 145 ----~~~~~~~-~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------------~~~~~~~~~~~ 196 (262)
+..+.+. . .+....|....-.+.+.|+.++|+.++-..... ...++...|-.
T Consensus 658 ~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~ 737 (877)
T KOG2063|consen 658 VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLT 737 (877)
T ss_pred HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHH
Confidence 1111111 0 122333433333444888888888877655431 12346677888
Q ss_pred HHHHHHhh
Q 037499 197 LIYGLCLE 204 (262)
Q Consensus 197 li~~~~~~ 204 (262)
+++.|...
T Consensus 738 lL~~~l~~ 745 (877)
T KOG2063|consen 738 LLRIYLNP 745 (877)
T ss_pred HHHHHhcc
Confidence 88777655
No 406
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=76.53 E-value=43 Score=28.16 Aligned_cols=177 Identities=15% Similarity=0.072 Sum_probs=91.6
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh----HHHHHHHHHhcC-CHH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS----FNTLLNAMLTCG-KID 139 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~g-~~~ 139 (262)
.++++|++..++.++. +.+.+. +-+..|.++|.++.+.|+.||..| ....+.+|+-.| .++
T Consensus 208 ~~ldeal~~~~~a~~~-~~~~SI-------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 208 DSLDEALARAEEAKAE-GKPISI-------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred CCHHHHHHHHHHHHHc-CCceEE-------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 4667777777777664 222222 334456788899999998887654 333455577776 466
Q ss_pred HHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCchHHHHHHHHHH------------
Q 037499 140 RMTDLFQIMEKY----VSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGL------------ 201 (262)
Q Consensus 140 ~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------------ 201 (262)
++.++..+=.+. -..+..-....+..+.+.|- +|-.-.+.....+.|+. +.+.|-..+..|
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Confidence 665554321110 00111112222333333332 23333344445555553 333333333222
Q ss_pred ---HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------------HHhcCChhHHHHHHHHHHHcCC
Q 037499 202 ---CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG--------------LCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 202 ---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~--------------~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
|-+|+.++-.+.=+.+.+ -+++|...++.+=.+ |...|.-.++--.|++|++.|-
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e--~~~~~~~~~~WI~~A~e~~~fqGlpARI~wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKE--LFPEDAHLHRWIDMAQERVSFQGLPARICWLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhcCcccCCchhhhhcCccHHHHHHHHHHHHHHcCC
Confidence 345777775555444443 445555554444222 4445555666677899988873
No 407
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=76.46 E-value=6.9 Score=30.33 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
-|+..|....+.||+++|+.++++..+.|..--..+|-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34577777777777777777777777777654444443
No 408
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.16 E-value=14 Score=30.61 Aligned_cols=106 Identities=9% Similarity=-0.012 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
++.+...+.++.|..++.+.++.. || ...|..-..++.+.+++..|+.=+....+..+.....|..=..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 555667788888888888888763 44 344444457788888888888877777776655556666666777777778
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
.+|...|+.... +.|+..-....+.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 888888877766 46777777766655543
No 409
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.97 E-value=32 Score=26.02 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
+.|...++++.|+..|.+.+.. .|++ .-|+.-+.++.+..+++.+..=-....+..+.......-+..+......++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455566778888877666654 4655 445666777777888887776666665544433444455566667777888
Q ss_pred HHHHHHHHHHH----CCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 174 DAWKVFDEMLK----RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 174 ~a~~~~~~m~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.|+..+.+... ..+++-......|..+=-..-...+..++.+..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877643 234444555565655433333344444444444
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=75.73 E-value=23 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
++..+.+.+..-.|.++++.+.+.++
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 33344444333444444444444333
No 411
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=75.68 E-value=37 Score=26.68 Aligned_cols=180 Identities=13% Similarity=0.093 Sum_probs=99.1
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-----ChhHH--------HHHHHHHHhcCCCCc
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-----MFDEV--------QQILHQLKHDTRVVP 85 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a--------~~~~~~~~~~~~~~~ 85 (262)
.-++..+++++..+. ....+...|..++..+.... ..+.. .+++..+.++-|..+
T Consensus 53 ~~~~~~~l~l~~~~~------------~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 120 (324)
T PF11838_consen 53 RLSYSDFLDLLEYLL------------PNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDP 120 (324)
T ss_dssp SS-HHHHHHHHGGG-------------GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSS
T ss_pred CCCHHHHHHHHHHhc------------cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 445677888888772 22346777777776554432 11111 123333333324443
Q ss_pred c------HHHHH-HHHHHHHhcCC---HHHHHHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 86 E------EIIFC-NVISFYGRARL---LEHALQVFDEMSSFNV----QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 86 ~------~~~~~-~l~~~~~~~~~---~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
. ..... .++...+ |+ ...|.+.|+.....+. ..+......++....+.|..+.-..+++.....
T Consensus 121 ~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~ 198 (324)
T PF11838_consen 121 RPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS 198 (324)
T ss_dssp S--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc
Confidence 3 22233 3344444 44 5678888888776422 335556677777788888877766666666654
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhCC--HHHHHHHHHH
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQPTLVTFGTLIYGLCLELR--VDEALKLKED 216 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~ 216 (262)
.+...-..++.+.+...+.+...++++.....+ ++ +..... ++.++...+. .+.+.+++..
T Consensus 199 --~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~-~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 --TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVR-SQDIRY-VLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp --STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS--TTTHHH-HHHHHH-CSTTCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccc-cHHHHH-HHHHHhcCChhhHHHHHHHHHH
Confidence 567778889999999999999999999988864 44 333433 3444442333 3666666543
No 412
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.49 E-value=43 Score=29.27 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 61 LGRAKMFDEVQQILHQLKHDTRVVPE------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
..+..++..+++.|..-... ++.| ......+--+|.+..+.|.|.+++++..+.. +.++.+--.+..+...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~--i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD--IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHH
Confidence 44557788888888766552 3333 3346677788899999999999999999875 4556565666777788
Q ss_pred cCCHHHHHHHHHHHHh
Q 037499 135 CGKIDRMTDLFQIMEK 150 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~ 150 (262)
.|..++|+.+....+.
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
Confidence 8889999888766543
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.98 E-value=37 Score=26.29 Aligned_cols=182 Identities=8% Similarity=-0.021 Sum_probs=111.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----
Q 037499 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---- 134 (262)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 134 (262)
..+++..+...+....... +......+...|.. ..+..+|.++|....+.|.+ .....|...|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv 125 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGV 125 (292)
T ss_pred ccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCc
Confidence 3456777777777776531 12334444444443 34678899999977776632 233345555544
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh---
Q 037499 135 CGKIDRMTDLFQIMEKYVSPD-ACSYNILMHGCVVSR-------RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL--- 203 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 203 (262)
..+..+|...|+..-+.+.++ ......+...|.... +...|...+.++-..+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 348899999999998887755 344555555554431 2337888888888876 34444444444432
Q ss_pred -hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---------------ChhHHHHHHHHHHHcCCC
Q 037499 204 -ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG---------------ELSLALGFKEEMVRNKIE 259 (262)
Q Consensus 204 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~~ 259 (262)
..+..+|...|....+. |. ......+- .+...| +...|...+......|..
T Consensus 203 v~~d~~~A~~wy~~Aa~~-g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQ-GD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCcCHHHHHHHHHHHHHC-CC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 34788999999988765 43 22222222 444444 777788888877776654
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.97 E-value=28 Score=25.00 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=14.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4456666666666666666655
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.56 E-value=35 Score=29.52 Aligned_cols=115 Identities=14% Similarity=0.002 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 182 (262)
+-+-.++..|.+.. .|-....|...-...-.|+...|...+.......+ ..-+....+.....+.|-...|-.++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 34444454554322 33323333222223346888888888887766655 44455566667777778788888888777
Q ss_pred HHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 183 LKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.... ...+-++..+.+++....+++.|++.|++.++.
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 7654 234556777888888899999999999888764
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.21 E-value=18 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=13.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHh
Q 037499 198 IYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 198 i~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.......|++++|...+++..+.
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH
Confidence 33445556666666666665543
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=73.68 E-value=7.8 Score=22.38 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
....++.++..+++-.-.+.++..+.+..+.| ..+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33345555555555555555555555555554 234444444444443
No 418
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=73.37 E-value=27 Score=23.99 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 74 LHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
.+.+++ .|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|--.-+..+...|
T Consensus 9 ~~~lk~-~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKE-AGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHH-cCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344444 37777765 45567777788888999999999998875555554433445555555
No 419
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=73.36 E-value=43 Score=26.33 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 67 FDEVQQILHQLKHDTRV---VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.+.|.+.|+.......- ..++.....++....+.|+.+.-..+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 66788888888774211 34555666777777788887665566665554 4567778889999999999999999
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHhcCCh--hHHHHHHHH----HHHCCCCCchHHHHHHHHHH----HhhCCHHHHHH
Q 037499 144 LFQIMEKYV-SPDACSYNILMHGCVVSRRL--EDAWKVFDE----MLKRRLQPTLVTFGTLIYGL----CLELRVDEALK 212 (262)
Q Consensus 144 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~----m~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~ 212 (262)
+++...... .++... ..++.++...+.. +.++..+.. +.+. ...+......++..+ +.....++..+
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 300 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLDELEE 300 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHHHHHH
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHHHHHH
Confidence 999888865 344444 4444444433333 666666543 3322 222222444555443 33445555555
Q ss_pred HHHHH
Q 037499 213 LKEDM 217 (262)
Q Consensus 213 ~~~~~ 217 (262)
+|+.-
T Consensus 301 f~~~~ 305 (324)
T PF11838_consen 301 FFEDK 305 (324)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 55443
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.08 E-value=57 Score=27.64 Aligned_cols=38 Identities=0% Similarity=0.007 Sum_probs=22.6
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 191 (262)
.+...+..++.+....+....|+.++.++.+.|..|..
T Consensus 246 ~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 246 HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 34444555555554444556777777777777765543
No 421
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.57 E-value=43 Score=26.03 Aligned_cols=220 Identities=14% Similarity=0.144 Sum_probs=126.5
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCCccHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM-------FDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
.....+++.|.++.+.-.. .+...+..+...+.+..+ ++.-..+|+..--- +.|+..
T Consensus 6 ~L~~~df~~a~~ll~~~~~--------------~~l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPl--v~~~~~ 69 (292)
T PF13929_consen 6 FLSKQDFDEANKLLQSNPE--------------NSLDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPL--VDPSET 69 (292)
T ss_pred HHHHhhHHHHHHHHccCCc--------------chhHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCC--CCCCcc
Confidence 3456678888888755422 255566667776666533 33445555544432 233332
Q ss_pred -HHHHHHHHHH---hcC----CHHHHHH-HHHHHhhcCCCCChhhHHHHHHHHHh----------------cCCHHHHHH
Q 037499 89 -IFCNVISFYG---RAR----LLEHALQ-VFDEMSSFNVQRTVKSFNTLLNAMLT----------------CGKIDRMTD 143 (262)
Q Consensus 89 -~~~~l~~~~~---~~~----~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~----------------~g~~~~a~~ 143 (262)
-|..-...|. .+. ....-.. +|.-=...|++++..-.-.++..... +....+|+.
T Consensus 70 ~yW~~R~~Fl~lLn~~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~ 149 (292)
T PF13929_consen 70 AYWSLRLKFLKLLNIADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALK 149 (292)
T ss_pred chHHHHHHHHHHHhhcCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHH
Confidence 3332222111 111 1111111 11111234556655555555544322 223456666
Q ss_pred HHHHHHhc--CCCChhHHHHHHHHHHhcC--ChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499 144 LFQIMEKY--VSPDACSYNILMHGCVVSR--RLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 218 (262)
+|+..... -..|..+...+++...... ....-.++.+-+... +-.++..+...++..+++.+++..-.++++...
T Consensus 150 L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~ 229 (292)
T PF13929_consen 150 LYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCI 229 (292)
T ss_pred HhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhc
Confidence 66633322 2377888888887776522 233334444444443 456788888999999999999999999999887
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 037499 219 RVYNVKPDAQVFASLIKGLCAVGELSLALGFKE 251 (262)
Q Consensus 219 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 251 (262)
...+..-|...|..+|......|+..-...+.+
T Consensus 230 ~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 230 PNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 643345588899999999999999765555443
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.26 E-value=23 Score=22.84 Aligned_cols=80 Identities=9% Similarity=-0.028 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 180 (262)
...++|..+.+.+...+. ....+--.-+..+.+.|++++| +..-.....||...|-++... +.|-.+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 345566666666655441 2222222233445556666666 111222222555555444332 5555555555555
Q ss_pred HHHHCC
Q 037499 181 EMLKRR 186 (262)
Q Consensus 181 ~m~~~~ 186 (262)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 555443
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=72.00 E-value=49 Score=26.39 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=28.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
+..+..+.|+..+|.+.++++.+.-.-.+ ..+...+|.++....-+.++..++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444566777777777766655411000 112334566666655555555555444
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.77 E-value=13 Score=19.80 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=13.6
Q ss_pred hhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
+.|-.+++..++++|.+. |+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~-g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQA-GFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHc-CcccCHHHHHHHH
Confidence 344444444444444332 4444444444433
No 425
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=71.70 E-value=14 Score=21.85 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=27.8
Q ss_pred hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 037499 17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA 64 (262)
Q Consensus 17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 64 (262)
...=+.+.|..++..++. ..+.++..||++...+.+.
T Consensus 8 LemlDtEmA~~mL~DLr~-----------dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 8 LEMLDTEMAQQMLADLRD-----------DEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHHhcc-----------hhhcChHHHHHHHHHHHHc
Confidence 334467788888888843 5667899999998877765
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.22 E-value=50 Score=26.23 Aligned_cols=39 Identities=8% Similarity=-0.066 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCchHHHH
Q 037499 157 CSYNILMHGCVVSRRLEDAWKVFDEMLK----RRLQPTLVTFG 195 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~ 195 (262)
..+......|++.|+.+.|++.+++..+ .|.+.|+..+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~ 147 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 3445555566666666666655544433 24444544443
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.06 E-value=28 Score=23.21 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhc----CChhHHHHHHHHHHhc----CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-
Q 037499 51 LLHYDLIITKLGRA----KMFDEVQQILHQLKHD----TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT- 121 (262)
Q Consensus 51 ~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 121 (262)
...|...|.-..+. +.......++++.... .....|.......+. |++.- ..+.++|..|...|+-..
T Consensus 22 L~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~-ya~~~--~~~~~if~~l~~~~IG~~~ 98 (126)
T PF08311_consen 22 LDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIK-YADLS--SDPREIFKFLYSKGIGTKL 98 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHH-HHTTB--SHHHHHHHHHHHHTTSTTB
T ss_pred hHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHH-HHHHc--cCHHHHHHHHHHcCccHHH
Confidence 34455555444332 4455555555555442 233445554444443 33322 289999999998776554
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQI 147 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 147 (262)
...|......+...|++++|.++|+.
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45688888889999999999999975
No 428
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=71.04 E-value=24 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=18.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
+..+.++...++|+++.+.|.+.| ..+...-
T Consensus 68 iD~lrRC~T~EEALEVInylek~G-EIt~e~A 98 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG-EITPEEA 98 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHH
Confidence 555556666666666666666666 4444333
No 429
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.91 E-value=25 Score=22.69 Aligned_cols=74 Identities=8% Similarity=-0.057 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.++|..+.+.+...+.....+--+-+..+.+.|+|+.| +..-. ....||...|-+| +-.+.|--+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHHHH
Confidence 45555555555544433333333444455556666655 11111 1134455544444 234555555555555554
No 430
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.75 E-value=64 Score=27.26 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=94.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccHH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH--HHHH
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEI--------IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF--NTLL 129 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll 129 (262)
+-.-.|++.+|++-+.+|.+...-.|.+. ....+.--+...+.++.|..-|....+.--..+...+ ..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Confidence 33446999999999999987543345422 2222333445678899999999877654334444333 3345
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH----------HHHHHHhcCChhHHHHHHHHHHHCCCCCc-----hHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI----------LMHGCVVSRRLEDAWKVFDEMLKRRLQPT-----LVTF 194 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~ 194 (262)
..|.+.|+.+.--++++.+ ++++..++.. -.-...+.+++.+|.+.+++-.+..-.-| .-..
T Consensus 412 i~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 6688877766555555444 4444433321 11122478999999999988776421111 1112
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499 195 GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 195 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 228 (262)
..|-..+.-.|+..++.+...-..+-..--||..
T Consensus 489 vLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 489 VLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 2222334456777777776655444323345543
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.93 E-value=73 Score=29.17 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=74.0
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 176 (262)
+..+|+.+.|++.-.++- +..+|..|...-.+.|+.+-|+..|++.+. |..+--.|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHH
Confidence 345666666665543332 345677777777777777777777777654 444445566667776666
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
++.+..... -|..+ .+. ...-.|+.++-.+++... |..|= .|. .-...|.-++|.++.++..+.
T Consensus 719 Km~~iae~r---~D~~~--~~q-nalYl~dv~ervkIl~n~----g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEIR---NDATG--QFQ-NALYLGDVKERVKILENG----GQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHhh---hhhHH--HHH-HHHHhccHHHHHHHHHhc----CcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 655544332 12221 111 112357777777766544 33331 121 123567778888888777664
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.69 E-value=24 Score=21.94 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.3
Q ss_pred hcCCHHHHHHHHHHH
Q 037499 134 TCGKIDRMTDLFQIM 148 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~ 148 (262)
..|++++|...+++.
T Consensus 53 ~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 53 RFGHYEEALQALEEA 67 (94)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444433
No 433
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.35 E-value=63 Score=26.64 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcc-HHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-RVVPE-EIIFC 91 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~ 91 (262)
.++...++.+.....|..... -......+.--|++...-.|+.....+.++.+.+.- |-.|. ..| .
T Consensus 209 ~~~~s~~dp~~va~~~g~s~~-----------y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y 276 (525)
T KOG3677|consen 209 TASVSNKDPALVALIFGASQP-----------YANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-Y 276 (525)
T ss_pred HHHhcCCChhhhhhhhccccH-----------HHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-e
Confidence 444555666655555554411 112234455567777777899888888888877631 22222 223 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 92 NVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
.+.-+|.-.|++.+|.++|-...-
T Consensus 277 ~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 277 QVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999998877653
No 434
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.16 E-value=60 Score=26.25 Aligned_cols=165 Identities=12% Similarity=0.162 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh-hc-----CCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMS-SF-----NVQRTVKSFNTLLN--AMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~-~~-----~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
...++..+.+++++.-++..++.-. +. ..+|.....-.+-. .|....+++.|+.+|+..... |....-..
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~--Pa~~vs~~ 220 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT--PAMAVSHI 220 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc--chhHHHHH
Confidence 4446667777777766666554321 11 11222111111111 134567899999999988754 43333333
Q ss_pred HHHHHH--------hcCCh--------hHHHHHHHHHH-------HCCCCCchHHHHHHHHH----HHhhCCHHHHHHHH
Q 037499 162 LMHGCV--------VSRRL--------EDAWKVFDEML-------KRRLQPTLVTFGTLIYG----LCLELRVDEALKLK 214 (262)
Q Consensus 162 l~~~~~--------~~g~~--------~~a~~~~~~m~-------~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~ 214 (262)
.+.+|- ..|.. ..|.+.++.|. +.-...+..+..+++.. +.+-++..-|...+
T Consensus 221 hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av 300 (422)
T KOG2582|consen 221 HLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAV 300 (422)
T ss_pred HHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 334432 34443 33444444433 10011122224455533 34556666677666
Q ss_pred HHHHHhcCCCCCHHHHHHHH----HHHHhcCChhHHHHHHHHHHHcC
Q 037499 215 EDMMRVYNVKPDAQVFASLI----KGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 215 ~~~~~~~~~~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
..+.+. .+.-=..+|.+|- ...++.+..++|.+..-+|.+.|
T Consensus 301 ~sl~k~-nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 301 SSLYKK-NIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHH-HHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 666554 3333344555552 23345677788888888887765
No 435
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=69.13 E-value=28 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 126 NTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345566666777777777776653
No 436
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.01 E-value=96 Score=28.57 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHhcCCH--HHHHHHHHHHHhcCC-CChhHHH---
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFN---VQRTVKSFNTLLNAMLTCGKI--DRMTDLFQIMEKYVS-PDACSYN--- 160 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~~~~~~~-~~~~~~~--- 160 (262)
|..|+..|...|+.++|+++|.+..+.. ..--...+..++.-+-+.+.. +-.++.-....+..+ .....++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6678888888888888888888887621 011112233345544444443 444444444443332 1111111
Q ss_pred ---------HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC--------CHHHHHHH--HHH---HH
Q 037499 161 ---------ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL--------RVDEALKL--KED---MM 218 (262)
Q Consensus 161 ---------~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~--~~~---~~ 218 (262)
..+-.|......+-+..+++.+....-.++..-.+.++..|++.= +-+++.+. -+. +.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 123345667777888888888887766667777777777776432 22233333 111 11
Q ss_pred H-hcCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 219 R-VYNVKPD--------AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 219 ~-~~~~~p~--------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+ .....|. ...|....-.+.+.|+.++|+.++-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 1122232 22233222335588999999988766554
No 437
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.87 E-value=54 Score=25.61 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH-------HHHHHHHHHHhcCCHHHHHHHHHHHh----hcCCCCChhh
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI-------IFCNVISFYGRARLLEHALQVFDEMS----SFNVQRTVKS 124 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 124 (262)
.+.+-..+.+++++|+..+.++... |+..+.. +...+...|...|+...-.+...... +..-+.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 4566778889999999999999875 6666543 45567888888888765555443322 2221333445
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 125 FNTLLNAMLTC-GKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 125 ~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
..+++..+... ..++..+.+.....+... .-...-.-++..+.+.|.+.+|+.+...+.
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 56666665443 456666666655544322 122233567888899999999988765543
No 438
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.84 E-value=35 Score=23.46 Aligned_cols=79 Identities=9% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCC-CChhHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSF------NVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVS-PDACSYNI 161 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~-~~~~~~~~ 161 (262)
.+.++......+++...+.+++.+... | ..+...|..++.+..+..- .--+..+|..+++.+. .++.-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444444444444444444444443211 1 2344556666666655444 3345556666665433 66666666
Q ss_pred HHHHHHhc
Q 037499 162 LMHGCVVS 169 (262)
Q Consensus 162 l~~~~~~~ 169 (262)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66665554
No 439
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.81 E-value=25 Score=21.79 Aligned_cols=30 Identities=17% Similarity=-0.043 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
|...-..+...+...|+++.|++.+-++.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444444455555555544444443
No 440
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.49 E-value=28 Score=22.15 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
..+.+++....+....+....-|.-.|++.|+.+.|.+-|+.=+..
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 3444555544432222223333444566666666666666554443
No 441
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=68.13 E-value=6.5 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=14.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 237 LCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+...|--.+++.+.-++.+.|+.|.
T Consensus 14 lLntgLd~etL~ici~L~e~GVnPe 38 (48)
T PF12554_consen 14 LLNTGLDRETLSICIELCENGVNPE 38 (48)
T ss_pred HHcCCCCHHHHHHHHHHHHCCCCHH
Confidence 3444555566666666666666664
No 442
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=67.92 E-value=36 Score=23.19 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCC-CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 154 PDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRL-QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
++..+--.+.-++.+.. +..+...+++.+.+... .-.....--|.-++.+.++++.+.++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44444444555555544 35567777877776321 112233333445678888888888888888754
No 443
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=67.89 E-value=53 Score=25.18 Aligned_cols=60 Identities=10% Similarity=-0.020 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKP-----DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.++..|.+.|+.+.|..++--+....+... +...-..|+......++++-+.++.+-+..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 466667777888877777666643322222 344455677777888999988888777665
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.69 E-value=20 Score=20.69 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=26.2
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
|....++.++..+++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445555566666666566666666666665553 344555555555444
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.11 E-value=16 Score=29.90 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (262)
..|++..+-.||+..|+++++.+.-+.. +.-.+-..-.+.+|.-+.-+|.-.+++.+|+++|....-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~---~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKK---GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccc---hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999854321 011111223566788888889999999999999988754
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.98 E-value=14 Score=29.28 Aligned_cols=94 Identities=16% Similarity=0.082 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhhCCHHHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL-VTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a 210 (262)
....|.++.|++.|-......++....|..-.+.+.+.+.+..|++=+...... .||. .-|-.=-.+-.-.|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence 346788999999999999988898999999999999999999999998888774 3443 2333333344557999999
Q ss_pred HHHHHHHHHhcCCCCCHH
Q 037499 211 LKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~~~ 228 (262)
.+.|....+. +..+...
T Consensus 202 a~dl~~a~kl-d~dE~~~ 218 (377)
T KOG1308|consen 202 AHDLALACKL-DYDEANS 218 (377)
T ss_pred HHHHHHHHhc-cccHHHH
Confidence 9999988765 5544433
No 447
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.73 E-value=91 Score=27.44 Aligned_cols=191 Identities=15% Similarity=0.126 Sum_probs=97.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCcc-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhcCCCCChhhHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPE-------EIIFCNVISFYGRARLLEHALQVFD--------EMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 128 (262)
.+++..|...++.+.....-.|+ +.++....-.+-..|+.+.|+..|. .....+...+..++..+
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 58899999999988864221222 2223333334456799999999997 44444434444444332
Q ss_pred --HHHHHhcC--CHHH--HHHHHHHHHhcCC----CChhHHHHH-HHHHHhcCCh--hHHHHHHHHHH-----HCCCC-C
Q 037499 129 --LNAMLTCG--KIDR--MTDLFQIMEKYVS----PDACSYNIL-MHGCVVSRRL--EDAWKVFDEML-----KRRLQ-P 189 (262)
Q Consensus 129 --l~~~~~~g--~~~~--a~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~--~~a~~~~~~m~-----~~~~~-~ 189 (262)
+..+...+ ..++ ..++++.+..... .+..++..+ +.++...... .++...+..-. +.+.. .
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 22222222 2333 7777777765322 233344444 3333322222 23333333222 22111 1
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC--CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 190 TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP--DAQVF-----ASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
-..+++ ++..-.-.|+..+..+..........-.| ....| ..+...|...|+.++|.+...+...
T Consensus 534 ~~~~L~-lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLN-LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 122233 33332226888776666555443311123 33445 3344457789999999998877653
No 448
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.62 E-value=29 Score=22.28 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 91 CNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
..++.-|...++.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345555666677777777666653
No 449
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.53 E-value=24 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
|..|+..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444445555555555555544443
No 450
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.88 E-value=1e+02 Score=27.74 Aligned_cols=100 Identities=7% Similarity=0.015 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 037499 59 TKLGRAKMFDEVQQILHQLKHDTRVVP---EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC 135 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 135 (262)
+-+.+.+.+++|+...+.... ..| -.......|..+.-.|+++.|-...-.|.. -+..-|.--+..+...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 344445555555555544432 222 233344455555555555555555555542 2333444444444444
Q ss_pred CCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHh
Q 037499 136 GKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVV 168 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 168 (262)
++..... .-+....+ .++.+|..++..+..
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 4433211 11222222 456677777776665
No 451
>PLN03025 replication factor C subunit; Provisional
Probab=65.53 E-value=66 Score=25.45 Aligned_cols=92 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-----------VKPDAQVFASLI 234 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~p~~~~~~~l~ 234 (262)
+....+-+-...+-+.+.+.|+..+......++..+. |+...+...++......+ -.+.......++
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i 232 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIV 232 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 235 KGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
..+.. +++++|+..+.++...|+.|
T Consensus 233 ~~~~~-~~~~~a~~~l~~ll~~g~~~ 257 (319)
T PLN03025 233 RNCLK-GKFDDACDGLKQLYDLGYSP 257 (319)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 452
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=65.35 E-value=1.2e+02 Score=28.37 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--cHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCCC
Q 037499 44 LKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP--EEIIFCNVISFYG-RARLLEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 120 (262)
+..+.|-+-+.. .++.+...++|.+|..+.+.-+-+.++-- ++..|-.=+..+. +.++.+---.++..+.+..+.
T Consensus 688 LEtI~PR~LVL~-~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt- 765 (928)
T PF04762_consen 688 LETIYPRALVLA-GIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT- 765 (928)
T ss_pred hhhhccHhHHHH-HHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc-
Confidence 344455444443 45577778999999888776554322211 2333333233333 344544444444444433211
Q ss_pred ChhhHHHHH------------HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC--ChhHHHHHHHHHHHC
Q 037499 121 TVKSFNTLL------------NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR--RLEDAWKVFDEMLKR 185 (262)
Q Consensus 121 ~~~~~~~ll------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~ 185 (262)
...|.... ......++.+..-+.+............-...++.+|++.+ ++++|+....++++.
T Consensus 766 -~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 766 -KTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred -ccccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 11222221 11112233344444443333222244555678888998888 889999999988865
No 453
>PRK05414 urocanate hydratase; Provisional
Probab=65.25 E-value=71 Score=27.10 Aligned_cols=179 Identities=13% Similarity=0.110 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh----HHHHHHHHHhcC-CHH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS----FNTLLNAMLTCG-KID 139 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~~~g-~~~ 139 (262)
.++++|++..++.++. +-+.+. +-+..|.++|.++.+.|+.||..| ....+.+|+-.| .++
T Consensus 217 ~~Ldeal~~~~~a~~~-~~~~SI-------------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 217 DDLDEALALAEEAKAA-GEPLSI-------------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred CCHHHHHHHHHHHHHc-CCceEE-------------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Confidence 4567777777777664 222222 334456788999999999988654 233344777777 466
Q ss_pred HHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCchHHHHHHHHHH------------
Q 037499 140 RMTDLFQIMEKY----VSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRLQPTLVTFGTLIYGL------------ 201 (262)
Q Consensus 140 ~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~------------ 201 (262)
++.++..+=.+. ...+..-....|..+.+.|- +|-.-.+.....+.|+. +.+.|-..+..|
T Consensus 283 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~-~aF~~P~fV~~~irplF~~G~GPF 361 (556)
T PRK05414 283 EAAELRAEDPEEFVKAAKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVE-NAFDFPGFVPAYIRPLFCEGKGPF 361 (556)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCcc-ccCCCCCchhhhcchhhhcCCCCc
Confidence 666554321110 00112222233333444442 23333344455555544 233332222222
Q ss_pred ---HhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH------------HHHhcCChhHHHHHHHHHHHcCC
Q 037499 202 ---CLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK------------GLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 202 ---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~------------~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
|-+|+.++-.+.=+.+.+.+.-..+...|-.+.. +|...|.-.++--.|++|++.|-
T Consensus 362 RWvalSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~e~~~f~GlpARI~w~g~~~R~~~~l~fNe~V~~Ge 433 (556)
T PRK05414 362 RWVALSGDPEDIYKTDAAVKELFPDDEHLHRWIDMARERILFQGLPARICWLGYGERARLGLAFNEMVRNGE 433 (556)
T ss_pred eEEEcCCCHHHHHHHHHHHHHhcccchHHHHHHHHHHhcCcccCCchhheecCccHHHHHHHHHHHHHHcCC
Confidence 3457777655554444442221222223322221 13445555666677899988874
No 454
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.75 E-value=66 Score=25.17 Aligned_cols=134 Identities=9% Similarity=0.114 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hcCCCCCh
Q 037499 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS----SFNVQRTV 122 (262)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 122 (262)
.+.|...+|+++.-- ..++++--+-+++..+..|-.-....+..+...|++.++.+.+.++..+.. ..|.+.|+
T Consensus 77 ikfD~~~~n~l~kkn--eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKKN--EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHhh--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 344566666665421 123333334445555544445556788899999999999999988877654 34655555
Q ss_pred hhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCC-CC-h---hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 123 KSFNT-LLNAMLTCGKIDRMTDLFQIMEKYVS-PD-A---CSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 123 ~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
...-. |.-.|....-.++-++..+.|.+.|. .+ . .+|.-+. +....++.+|-.++.+...
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 33322 22233444446777777777776655 22 1 2222221 2234567777777666553
No 455
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.00 E-value=6.2 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=16.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC
Q 037499 239 AVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 239 ~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.-|.-..|-.+|.+|+++|-+||
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc
Confidence 33444557778888888888777
No 456
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.66 E-value=81 Score=25.81 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=29.7
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChh--hHHHHHHHHHh--cCCHHHHHHHHHHHHh
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRTVK--SFNTLLNAMLT--CGKIDRMTDLFQIMEK 150 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~--~g~~~~a~~~~~~~~~ 150 (262)
+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34667777777777777665 344333 34444444443 3456666666666544
No 457
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=63.60 E-value=60 Score=24.26 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---cHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP---EEIIF--CNVISFYGRARLLEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (262)
.+.+...-+|.|+--|.-...+.+|-+.|..-. |+.| +...+ ..-|......|+.+.|++....+...-+..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 334444455555555555555555555554332 3444 23322 345666788899998888888775443334
Q ss_pred ChhhHHHH----HHHHHhcCCHHHHHHHHHHH
Q 037499 121 TVKSFNTL----LNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 121 ~~~~~~~l----l~~~~~~g~~~~a~~~~~~~ 148 (262)
|...+--+ +--+.+.|..++|++..+.=
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 43222222 22245677777777776643
No 458
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=63.36 E-value=1.1e+02 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=12.6
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 037499 241 GELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 241 g~~~~a~~~~~~m~~~g~~p 260 (262)
++...++.+++++.+.|+.+
T Consensus 259 ~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred CCHHHHHHHHHHHHHhCCCH
Confidence 56666666666666666543
No 459
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=63.21 E-value=7.3 Score=22.32 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHhcCCCCccH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
=+++.|+..|.+++....++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 37889999999999876677765
No 460
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.81 E-value=30 Score=22.38 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=26.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
++......+..-.|.++++.+.+.+..++..|....+..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666777776666555666555555666655543
No 461
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.71 E-value=96 Score=26.35 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=39.4
Q ss_pred CCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC------------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 185 RRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK------------PDAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
.|+..+......++. ...|+...|+.+++++....+-. ++...+..++.+....+....|+.++++
T Consensus 196 Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~ 273 (484)
T PRK14956 196 ENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILES 273 (484)
T ss_pred cCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 355555555554443 23466666666666543221101 1233344455554444445677778888
Q ss_pred HHHcCCCC
Q 037499 253 MVRNKIEM 260 (262)
Q Consensus 253 m~~~g~~p 260 (262)
+.+.|..|
T Consensus 274 l~~~G~d~ 281 (484)
T PRK14956 274 LYQEGQDI 281 (484)
T ss_pred HHHcCCCH
Confidence 87777665
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.08 E-value=87 Score=25.63 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=41.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHh--cCCHHHHHHHHHHHhhc
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGR--ARLLEHALQVFDEMSSF 116 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 116 (262)
+..+...+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566789999999999999985 555554 45555555543 56788999999987764
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.05 E-value=56 Score=23.10 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=31.7
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKI 138 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 138 (262)
|+..+..=. .++..+....+.-.|.++++.+.+.+...+..|.-.-|..+.+.|-.
T Consensus 21 GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 21 NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 565555432 34444444555667777777777776555555544444556555543
No 464
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=60.71 E-value=1.3e+02 Score=27.29 Aligned_cols=201 Identities=13% Similarity=0.036 Sum_probs=103.0
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHh
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLG---RAKMFDEVQQILHQLKH 79 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 79 (262)
+-+...+..||..+.+.|++++....-..|.+ -.+.++..|...+.... ..+....+..+|++...
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~-----------~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSE-----------IAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG 178 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHH-----------hcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence 33444567888999999998887666666632 33446666666665433 34677778888888776
Q ss_pred cCCCCccHHHHHHHHHHH-------HhcCCHHHHHHHHHHHhhc-CCCCC--hhhHH---HHHHHHHhcCCHHHHHHHHH
Q 037499 80 DTRVVPEEIIFCNVISFY-------GRARLLEHALQVFDEMSSF-NVQRT--VKSFN---TLLNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~---~ll~~~~~~g~~~~a~~~~~ 146 (262)
.... +..|.-.+..+ .+.++++....+|.+.... |...+ ...|. -+=..|..+-..++...+|.
T Consensus 179 dy~~---v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 179 DYNS---VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred cccc---chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5422 22333333222 2345677777777766532 22221 12222 22233444455566666666
Q ss_pred HHHhcCCCChhHHHHHHHHHHh-------cCChhHHHHH-------HHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499 147 IMEKYVSPDACSYNILMHGCVV-------SRRLEDAWKV-------FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~a~~~-------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 212 (262)
.-...+ .|..+-+.-..--.+ ..+++.+..- +++.... ..+-...|..+|..+...|+.-....
T Consensus 256 ~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 256 RELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred HHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 554443 222221111111111 1122222222 2222222 22334456667777777787766666
Q ss_pred HHHHHHH
Q 037499 213 LKEDMMR 219 (262)
Q Consensus 213 ~~~~~~~ 219 (262)
.++++..
T Consensus 334 ~~eR~~~ 340 (881)
T KOG0128|consen 334 IEERAVA 340 (881)
T ss_pred HHHHHHH
Confidence 6666544
No 465
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=60.55 E-value=38 Score=20.99 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
|...-..+...+...|++++|++.+-.+.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333334444444444444444443333
No 466
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.83 E-value=51 Score=26.07 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=45.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT-LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
..|+..|...+.-..+.+.+.+...+|.+..+.+ |.|+..|-. .-.-|...++++.+..+|..-..-.+.++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4455556666655555666666677777666654 555555543 2334555667777777776666655555555543
No 467
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=59.81 E-value=30 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=21.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++......+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555666666665555555544444444444444
No 468
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=59.18 E-value=1.4e+02 Score=27.19 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=19.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
.+...+..++.++. .++..+++.+++++...|..+
T Consensus 244 ~d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 244 LDQTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 44444445555433 366677777777776665543
No 469
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.17 E-value=61 Score=22.92 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCh
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 172 (262)
.++..+...+..-.|.++++.+.+.++ .+..|....+..+...|-+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344444444444455666666655554 4444444444455554443
No 470
>PRK12356 glutaminase; Reviewed
Probab=58.91 E-value=90 Score=24.79 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 192 VTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.+...+......+|-+|.+-++.-+.
T Consensus 232 ~~~r~v~s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 232 DNVPYILAEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred HHHHHHHHHHHHcCCccchhhHHHHh
Confidence 33444444445566666666665543
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.59 E-value=1.3e+02 Score=26.57 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=65.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRT------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 171 (262)
.+..++..+.++|..-... ++.| ......|--+|....+.|.|.+++++.++..+.+..+---+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3567788888888754432 1222 22456677788899999999999999999887777777777888888899
Q ss_pred hhHHHHHHHHHHH
Q 037499 172 LEDAWKVFDEMLK 184 (262)
Q Consensus 172 ~~~a~~~~~~m~~ 184 (262)
.++|+.+......
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 9999888876654
No 472
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.46 E-value=39 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFN 117 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~ 117 (262)
+..+.++.-.++|+++++.|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444455555555555555555555
No 473
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=57.86 E-value=1.7e+02 Score=27.48 Aligned_cols=203 Identities=15% Similarity=0.068 Sum_probs=0.0
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH-------------
Q 037499 27 QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV------------- 93 (262)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------- 93 (262)
++|+.. ...+|..+...+.-+.+..|.++-+.+....+.+ .+.-...+-+.+
T Consensus 677 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (932)
T PRK13184 677 ELFQRA-------------WDLRDYRALADIFYVACDLGNWEFFSQFSDILAE--VSDEITFTESIVEQKVEELMFFLKG 741 (932)
T ss_pred HHHHHH-------------hhcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HhhhccchHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSR 170 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g 170 (262)
+.+......++++.+.+.......+ ...+..++.-..-.++.+....+.+.+..... .....-...|.+|.-..
T Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (932)
T PRK13184 742 LEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNR 818 (932)
T ss_pred HHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhc
Q ss_pred ChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 037499 171 RLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
++++|.+++...... ........+-....-++-.++-+.|...|....+. .|=..+|...+ |.-.|...+...+
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~ 893 (932)
T PRK13184 819 DLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRED---ALFPRSLDGDI--FDYLGKISDNLSW 893 (932)
T ss_pred cHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcccc---ccCcchhhccc--cchhccccccccH
Q ss_pred HHH
Q 037499 250 KEE 252 (262)
Q Consensus 250 ~~~ 252 (262)
+++
T Consensus 894 ~~~ 896 (932)
T PRK13184 894 WEK 896 (932)
T ss_pred HHH
No 474
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=57.73 E-value=34 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=6.0
Q ss_pred hCCHHHHHHHHHHHH
Q 037499 204 ELRVDEALKLKEDMM 218 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~ 218 (262)
.|++-+|-++++.+.
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 475
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=57.13 E-value=1.7e+02 Score=27.44 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCccHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..++-+...++|.+|..+.++=+-.-+ --+..++..|-.=+..+.++ ++.+---.++..+.+++ + +...
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlN-------ll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~ED-v--t~tm 768 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLN-------LLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNED-V--TKTM 768 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccc-------eEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccc-c--cccc
Confidence 445667789999999999887533211 11234666665555555554 55555555555555432 1 1122
Q ss_pred HHHHH------------HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 037499 90 FCNVI------------SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG--KIDRMTDLFQIMEKY 151 (262)
Q Consensus 90 ~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~ 151 (262)
|.... ......+++...-+.+.+..... .....-...++.+|.+.+ ++++|+.+..++++.
T Consensus 769 Y~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 769 YKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 22222 11112233344334443333211 223345677889999988 899999999999875
No 476
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.11 E-value=79 Score=26.82 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=76.4
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-----
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-----NLLHYDLIITKLGRAKMFDEVQQILHQLKH----- 79 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 79 (262)
..-...+.-.|++.+|.+++...--.. ..+... .-..||.+.-...+.|.+..+..+|....+
T Consensus 244 ~LKsq~eY~~gn~~kA~KlL~~sni~~-------~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 244 LLKSQLEYAHGNHPKAMKLLLVSNIHK-------EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred HHHHHHHHHhcchHHHHHHHHhccccc-------ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 333455666899999999987652221 112211 334467777777778888887777777664
Q ss_pred -cCCCCcc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 80 -DTRVVPE-----------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 80 -~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
+.|+.|. ..+|| ..-.|...|++-.|.+.|.+..+. +..++..|.-|..+|.
T Consensus 317 L~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1244443 22333 444677899999999999988765 3567888999988886
No 477
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=56.89 E-value=1.3e+02 Score=25.93 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 037499 92 NVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45556666666666666666654
No 478
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=56.39 E-value=1.2e+02 Score=25.38 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=58.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCC
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM--------LTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--------~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.+.|+..+.+-+.+.++..-..+....+|+-..+.+ .|-...+.+++-.. .++..-++++++++.|...-.
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 578888888888888888888888888888888776 44433333332211 234567888888888866544
Q ss_pred -CChhHHHHHHHHHH
Q 037499 154 -PDACSYNILMHGCV 167 (262)
Q Consensus 154 -~~~~~~~~l~~~~~ 167 (262)
.|..-+-.+...|+
T Consensus 257 ~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYS 271 (669)
T ss_pred cccchhHHHHHHHHh
Confidence 66666666666665
No 479
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.30 E-value=1.2e+02 Score=25.46 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..++.-|...|+..+|.+.++++--- .-.....+.+++.+.-+.|+-...+.+++...+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666666777777777666554321 011344566666666666665555555555443
No 480
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=56.25 E-value=95 Score=24.42 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCC-CChhHHHHHH---HHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 142 TDLFQIMEKYVS-PDACSYNILM---HGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~~~l~---~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
..+++.+..... +.......+| .+|....+.|....+++..... ..-....-|..+++....-|++.+..-+|+-
T Consensus 5 ~~Ll~~~~~~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~ 84 (296)
T PF14649_consen 5 HKLLELADSSHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDI 84 (296)
T ss_pred HHHHHHHhccCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHH
Confidence 345555554433 5566666777 5556667777777777765543 1122455677788888888888888888888
Q ss_pred HHHh
Q 037499 217 MMRV 220 (262)
Q Consensus 217 ~~~~ 220 (262)
+.+.
T Consensus 85 L~~n 88 (296)
T PF14649_consen 85 LIEN 88 (296)
T ss_pred HHHc
Confidence 8764
No 481
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.92 E-value=55 Score=21.37 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+++-+.++...++|+++++.|.+.|..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GEIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGEITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45667788888899999998888887665544443
No 482
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.52 E-value=17 Score=30.09 Aligned_cols=84 Identities=11% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------C----ChhHHHHHHHHHH---
Q 037499 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS------P----DACSYNILMHGCV--- 167 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~----~~~~~~~l~~~~~--- 167 (262)
..+++-+++++.+.+.| .+| ....-++.|.+.+++++|...++.-.+.+. | ...+...++...-
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 45788888898888876 445 344558899999999999999987765432 1 1223333443321
Q ss_pred --hcCChhHHHHHHHHHHHCCCC
Q 037499 168 --VSRRLEDAWKVFDEMLKRRLQ 188 (262)
Q Consensus 168 --~~g~~~~a~~~~~~m~~~~~~ 188 (262)
++|. ..+..+++.+...|+.
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~ 166 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFT 166 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCC
Confidence 2333 3566777777776654
No 483
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=55.45 E-value=56 Score=21.37 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHhcCCCCc-cHH
Q 037499 68 DEVQQILHQLKHDTRVVP-EEI 88 (262)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~ 88 (262)
+.+.+.+.+++...|+.| +..
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil 27 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNIL 27 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHH
Confidence 345566666666666666 443
No 484
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.45 E-value=1.7e+02 Score=26.81 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=11.4
Q ss_pred CChhHHHHHHHHHHHcCCC
Q 037499 241 GELSLALGFKEEMVRNKIE 259 (262)
Q Consensus 241 g~~~~a~~~~~~m~~~g~~ 259 (262)
|+..+++.+++++...|+.
T Consensus 259 ~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 259 GDGPEILAVADEMALRSLS 277 (830)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 5566666666666655543
No 485
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=55.08 E-value=1.2e+02 Score=24.94 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=109.2
Q ss_pred cCChhHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----c
Q 037499 64 AKMFDEVQQILHQLKHDT----RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----C 135 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~ 135 (262)
.++.+.|++-+-...+.. ....+..++..+++.|...++|+.--+...-+.+.. .....+...|+.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkr-gqlk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKR-GQLKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCC
Confidence 566777777665554432 234455667778888889999887766666554332 1222333444433322 1
Q ss_pred CCHHHHHHHHHH---HHhcCC--CC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHH-----------
Q 037499 136 GKIDRMTDLFQI---MEKYVS--PD--ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL----------- 197 (262)
Q Consensus 136 g~~~~a~~~~~~---~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l----------- 197 (262)
.+.+--+.+.+. +.+... .. ...-..+...+-..|+.++|..++.+.. +.||.++
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILE 176 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHH
Confidence 222333333333 322222 22 2333556777888999999998887653 2344333
Q ss_pred -HHHHHhhCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 198 -IYGLCLELRVDEALKLKEDMMRVYNVKPDA-----QVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 198 -i~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
++.|.-.+++-.|.-+-.++...+=-.|+. ..|+.+++.....+.+=.+.+.|+..-..
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 466777888888887777776654445554 34777777777777777777777766544
No 486
>PRK09857 putative transposase; Provisional
Probab=54.95 E-value=1e+02 Score=24.18 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 188 (262)
.++.-..+.++.++..++++.+.+..+......-++..-+.+.|.-+++.++.++|...|+.
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33333344444444444444444332222222223344444444444445555555554443
No 487
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.64 E-value=1.5e+02 Score=26.14 Aligned_cols=65 Identities=11% Similarity=0.063 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhc
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-------LEHALQVFDEMSSF 116 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 116 (262)
.+..+|. +|-.|.+.|++++|.++....... .......+...+..|....+ -++...-|++..+.
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3445665 555889999999999999666653 45555567777777766432 23555556555543
No 488
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=54.57 E-value=1.4e+02 Score=25.66 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=10.5
Q ss_pred CChhHHHHHHHHHHHcCCCC
Q 037499 241 GELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 241 g~~~~a~~~~~~m~~~g~~p 260 (262)
|+.++|+.+++++...|..|
T Consensus 271 ~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 271 RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 45555555555555555443
No 489
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.54 E-value=99 Score=23.89 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=97.4
Q ss_pred hcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499 18 LQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA----KMFDEVQQILHQLKHDTRVVPEEIIFCNV 93 (262)
Q Consensus 18 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 93 (262)
..+++..+...+......+ +......+...|... .+...|...|....+. | .......|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~-------------~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~-g---~~~a~~~l 115 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG-------------DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD-G---LAEALFNL 115 (292)
T ss_pred ccccHHHHHHHHHHhhhcC-------------ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc-c---cHHHHHhH
Confidence 4677788888888874321 224444445455443 5678899999977664 3 33334445
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 94 ISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-------KIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 94 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
...|.. ..+..+|.++|++..+.|..+...+...+...|..-. +...|...|.+.-..+ +......+
T Consensus 116 g~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~l 193 (292)
T COG0790 116 GLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLL 193 (292)
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHH
Confidence 555554 4589999999999999985543333444544544431 2347888888887765 44444455
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCC
Q 037499 163 MHGCVV----SRRLEDAWKVFDEMLKRRL 187 (262)
Q Consensus 163 ~~~~~~----~g~~~~a~~~~~~m~~~~~ 187 (262)
...|.. ..+..+|...|....+.|.
T Consensus 194 g~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 194 GRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 555533 4578899999999999875
No 490
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.09 E-value=1.1e+02 Score=24.42 Aligned_cols=102 Identities=7% Similarity=-0.015 Sum_probs=54.1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh---cCCCCCHHH
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV---YNVKPDAQV 229 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~p~~~~ 229 (262)
.|...++.+..+ +...+++-.+..+...+. |-.--...+......||+-|+.+.|.+.+.+..+. .|.+.|+..
T Consensus 68 ~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf 145 (393)
T KOG0687|consen 68 LDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVF 145 (393)
T ss_pred ccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHH
Confidence 444444444433 222333333334444333 32223445566677899999999999988776543 255666655
Q ss_pred HHHHHH-HHHhcCChhHHHHHHHHHHHcC
Q 037499 230 FASLIK-GLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 230 ~~~l~~-~~~~~g~~~~a~~~~~~m~~~g 257 (262)
+..=+. .|....-+.+-++..+.+.+.|
T Consensus 146 ~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 146 YKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 443322 2333333445555555555555
No 491
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=54.08 E-value=25 Score=21.46 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=31.4
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499 189 PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240 (262)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 240 (262)
|++.....++..+. .++++++...+.++... |+.++. ....+.......
T Consensus 3 p~~~~i~~i~~~~~-~~~~~~~~~~~~~l~~~-G~s~~~-Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCL-NGDFKEARKKLYELLVE-GYSASD-ILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHH-HTCHHHHHHHHHHHHHT-T--HHH-HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHH-hCCHHHHHHHHHHHHHc-CCCHHH-HHHHHHHHHHHh
Confidence 44555566666544 57999999999999987 776654 345555666655
No 492
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=53.08 E-value=92 Score=23.10 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=43.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhc----C-CCCh--hHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCC----chH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKY----V-SPDA--CSYNILMHGCVVSRR-------LEDAWKVFDEMLKRRLQP----TLV 192 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~----~-~~~~--~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~----~~~ 192 (262)
-+.....+++|++.|.-..-. + .+.. ..+..+.=.|...|+ +..|.+.|.+..+..-.| +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 445556677777766543221 1 1222 222333333444454 234555555555442221 222
Q ss_pred HHH-HHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 193 TFG-TLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 193 ~~~-~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+.. .+.....+.|+.++|.+.|.++...
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 222 2334455667777777777777765
No 493
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=52.65 E-value=90 Score=22.87 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHhcCChhHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDAC-SYNILMHGCVVSRRLEDAWKVFDE 181 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 181 (262)
...+.++..+...|+++.|-++|.-+......|.. .|..=+..+.+.+.-....+.++.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~ 101 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEW 101 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHH
Confidence 35677888888899999999999888776554443 234334444444443333333333
No 494
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.46 E-value=1.1e+02 Score=23.89 Aligned_cols=169 Identities=10% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
++....+.++.......++.+.. ...-...+..+...|++..|++++.+..+. --+...|+.+=..-.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~~l~~~~c~~~L~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LEELKGYSCVRHLSSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HHhcccchHHHHHhHHHH
Q ss_pred CHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499 137 KIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
+.....+---.-.-... .|+..|..+..+|.-.|+.+.+.+-+...-...+.........-.-.-..........--
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~~~~~ 254 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERSSKMS 254 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCC
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 214 KEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 214 ~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
|..+... -|.......|...|
T Consensus 255 y~~lC~~---v~~~~~~~cl~~l~ 275 (291)
T PF10475_consen 255 YKDLCKQ---VPSDQFIPCLLELL 275 (291)
T ss_pred HHHHHhh---CCHHHHHHHHHHHH
No 495
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=52.27 E-value=62 Score=20.86 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhcCCCCc-cHHH
Q 037499 68 DEVQQILHQLKHDTRVVP-EEII 89 (262)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~ 89 (262)
+.|...+.+++...|+.| |...
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~Nilc 27 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILC 27 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHH
Confidence 456666777776667777 4433
No 496
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.12 E-value=1.2e+02 Score=24.09 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH----------hhCCHHHH
Q 037499 142 TDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC----------LELRVDEA 210 (262)
Q Consensus 142 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~a 210 (262)
.++++.++..+. |.-..+.-+.-.+.+.=.+.++..+++.+... ..-|..++..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 466777766555 66666666666666777777788888777763 333555555554 24777777
Q ss_pred HHHHHHH
Q 037499 211 LKLKEDM 217 (262)
Q Consensus 211 ~~~~~~~ 217 (262)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 7776543
No 497
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.96 E-value=63 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 150 (262)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777888877777765
No 498
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=2.1e+02 Score=26.83 Aligned_cols=81 Identities=15% Similarity=0.001 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
.-.+.|.++.+-=-..|..++..-...+...|++..|.+++.++.+..+-.++...|..++..+...|-- ....+++.+
T Consensus 1214 ~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~~~ 1292 (1304)
T KOG1114|consen 1214 SYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVKNW 1292 (1304)
T ss_pred hHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHhhh
Confidence 3444555554431123556666666777888999999999999998777888888888888888887754 444555555
Q ss_pred HH
Q 037499 254 VR 255 (262)
Q Consensus 254 ~~ 255 (262)
..
T Consensus 1293 ~~ 1294 (1304)
T KOG1114|consen 1293 MR 1294 (1304)
T ss_pred ee
Confidence 43
No 499
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=51.65 E-value=1.8e+02 Score=26.15 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
....++.++.+ ++...++.+++++...|..+
T Consensus 248 ~If~LldAL~~-~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 248 YLYELLTGIIN-QDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCH
Confidence 34444444443 66667777777777666544
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.59 E-value=1.7e+02 Score=25.32 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH---HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII---FCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
...++.-|.+.+++++|+.++..|.-.. . .... .+.+.+.+.+..--++.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~--~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNT--M-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccc--c-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3457889999999999999999997642 1 2222 33444555555434444444554443
Done!