Query 037499
Match_columns 262
No_of_seqs 410 out of 1434
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 22:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8E-37 2.7E-41 249.4 24.4 188 51-240 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.5E-36 1.9E-40 244.4 23.4 191 69-261 8-209 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.2E-26 4.2E-31 194.6 28.0 237 3-255 336-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.6E-26 5.5E-31 193.9 25.2 240 3-257 302-546 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 7.4E-23 2.5E-27 163.0 25.8 233 6-255 135-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.3E-22 7.8E-27 160.2 25.5 237 2-255 63-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 7.5E-22 2.6E-26 160.0 23.2 237 2-256 22-286 (450)
8 4eqf_A PEX5-related protein; a 99.9 9.2E-22 3.2E-26 155.4 22.7 235 5-256 64-310 (365)
9 2y4t_A DNAJ homolog subfamily 99.9 3.3E-21 1.1E-25 156.3 25.2 235 3-255 57-323 (450)
10 3hym_B Cell division cycle pro 99.9 9.6E-21 3.3E-25 147.1 24.2 235 5-255 55-298 (330)
11 3hym_B Cell division cycle pro 99.9 4.6E-20 1.6E-24 143.3 26.7 239 3-256 19-265 (330)
12 1fch_A Peroxisomal targeting s 99.9 4.7E-20 1.6E-24 145.5 25.2 234 6-256 64-314 (368)
13 3cv0_A Peroxisome targeting si 99.9 7.2E-20 2.5E-24 142.0 23.0 235 5-256 20-269 (327)
14 3spa_A Mtrpol, DNA-directed RN 99.9 7.9E-23 2.7E-27 173.3 6.5 152 84-241 124-286 (1134)
15 3spa_A Mtrpol, DNA-directed RN 99.9 9.4E-22 3.2E-26 166.9 12.7 135 121-261 126-265 (1134)
16 2pl2_A Hypothetical conserved 99.9 2.1E-19 7.3E-24 131.7 22.1 200 48-254 2-212 (217)
17 3ieg_A DNAJ homolog subfamily 99.9 6.9E-19 2.4E-23 138.0 26.5 241 2-261 67-338 (359)
18 4eqf_A PEX5-related protein; a 99.9 1.2E-20 4.3E-25 148.9 16.2 235 2-252 95-352 (365)
19 3mkr_A Coatomer subunit epsilo 99.9 1.6E-18 5.3E-23 132.7 26.0 226 10-261 38-267 (291)
20 1fch_A Peroxisomal targeting s 99.9 5.4E-20 1.8E-24 145.2 18.4 237 2-253 94-356 (368)
21 3ieg_A DNAJ homolog subfamily 99.9 1.8E-18 6.1E-23 135.7 26.9 233 7-256 4-263 (359)
22 3cv0_A Peroxisome targeting si 99.8 4.9E-20 1.7E-24 142.9 17.1 236 2-253 51-312 (327)
23 2pl2_A Hypothetical conserved 99.8 1.6E-19 5.6E-24 132.3 18.7 201 3-219 2-213 (217)
24 3u4t_A TPR repeat-containing p 99.8 1E-18 3.5E-23 132.2 22.4 238 5-256 2-250 (272)
25 3uq3_A Heat shock protein STI1 99.8 2.3E-18 7.8E-23 129.0 21.5 226 7-256 6-236 (258)
26 2ho1_A Type 4 fimbrial biogene 99.8 1.8E-17 6E-22 124.0 26.3 200 51-256 37-238 (252)
27 2gw1_A Mitochondrial precursor 99.8 5.3E-19 1.8E-23 145.4 17.9 234 6-256 237-478 (514)
28 2q7f_A YRRB protein; TPR, prot 99.8 3.9E-18 1.3E-22 126.7 21.0 204 47-256 19-222 (243)
29 2vq2_A PILW, putative fimbrial 99.8 4.6E-18 1.6E-22 124.7 20.8 200 50-255 7-210 (225)
30 2vq2_A PILW, putative fimbrial 99.8 3.7E-17 1.3E-21 119.8 25.6 168 50-219 41-210 (225)
31 2q7f_A YRRB protein; TPR, prot 99.8 2.1E-18 7.2E-23 128.2 19.1 202 4-220 21-222 (243)
32 2ho1_A Type 4 fimbrial biogene 99.8 3.7E-18 1.3E-22 127.7 20.4 201 6-220 37-238 (252)
33 2h6f_A Protein farnesyltransfe 99.8 1.1E-18 3.9E-23 137.9 17.6 233 5-255 96-347 (382)
34 3mkr_A Coatomer subunit epsilo 99.8 2E-17 6.9E-22 126.5 23.4 218 13-256 6-229 (291)
35 1ouv_A Conserved hypothetical 99.8 9.7E-17 3.3E-21 121.6 26.7 227 2-257 2-252 (273)
36 2gw1_A Mitochondrial precursor 99.8 5.2E-18 1.8E-22 139.5 21.1 160 91-255 241-400 (514)
37 3fp2_A TPR repeat-containing p 99.8 1.7E-17 5.8E-22 137.3 22.8 239 2-256 55-407 (537)
38 3fp2_A TPR repeat-containing p 99.8 4.3E-17 1.5E-21 134.8 25.1 232 8-256 245-491 (537)
39 1b89_A Protein (clathrin heavy 99.8 4E-19 1.4E-23 140.1 9.4 206 4-255 30-235 (449)
40 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.8E-17 9.5E-22 124.4 17.1 230 11-256 10-244 (275)
41 2ond_A Cleavage stimulation fa 99.8 1.2E-15 4E-20 117.8 25.5 219 23-256 33-270 (308)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.3E-17 7.9E-22 124.8 13.3 225 5-250 42-269 (275)
43 3vtx_A MAMA; tetratricopeptide 99.7 2.1E-15 7.3E-20 107.3 22.6 166 50-219 4-169 (184)
44 3vtx_A MAMA; tetratricopeptide 99.7 1.5E-15 5.1E-20 108.1 21.7 167 86-256 4-170 (184)
45 3u4t_A TPR repeat-containing p 99.7 1.4E-15 4.9E-20 114.8 22.0 220 2-235 33-263 (272)
46 3nf1_A KLC 1, kinesin light ch 99.7 9.8E-18 3.3E-22 129.0 9.0 245 6-255 27-306 (311)
47 4abn_A Tetratricopeptide repea 99.7 5.1E-16 1.7E-20 126.7 18.3 215 21-252 83-317 (474)
48 3uq3_A Heat shock protein STI1 99.7 7E-15 2.4E-19 109.9 21.2 193 50-256 4-202 (258)
49 2h6f_A Protein farnesyltransfe 99.7 9.3E-15 3.2E-19 115.6 22.0 198 50-253 96-302 (382)
50 3as5_A MAMA; tetratricopeptide 99.7 2.1E-14 7.1E-19 101.8 21.9 161 10-184 12-172 (186)
51 2ond_A Cleavage stimulation fa 99.7 1.1E-14 3.6E-19 112.4 21.8 205 2-220 46-270 (308)
52 1ouv_A Conserved hypothetical 99.7 2.5E-13 8.7E-18 102.7 28.5 192 50-257 5-216 (273)
53 1b89_A Protein (clathrin heavy 99.7 3.7E-17 1.3E-21 129.0 6.5 188 15-249 12-199 (449)
54 4abn_A Tetratricopeptide repea 99.7 6.2E-16 2.1E-20 126.3 13.8 199 3-217 99-318 (474)
55 3as5_A MAMA; tetratricopeptide 99.7 3.8E-14 1.3E-18 100.4 20.7 165 51-219 8-172 (186)
56 3ulq_A Response regulator aspa 99.7 1.9E-14 6.6E-19 114.3 19.6 236 12-256 109-368 (383)
57 4a1s_A PINS, partner of inscut 99.7 5.3E-15 1.8E-19 118.4 16.4 236 9-255 51-331 (411)
58 4a1s_A PINS, partner of inscut 99.7 2.5E-15 8.6E-20 120.2 14.5 244 8-256 88-372 (411)
59 4gyw_A UDP-N-acetylglucosamine 99.6 3.9E-14 1.3E-18 120.4 22.0 167 49-219 7-173 (723)
60 4gyw_A UDP-N-acetylglucosamine 99.6 2.4E-14 8.2E-19 121.8 20.2 167 84-255 6-173 (723)
61 3sf4_A G-protein-signaling mod 99.6 3.9E-15 1.3E-19 118.6 14.5 243 8-255 49-335 (406)
62 3ro2_A PINS homolog, G-protein 99.6 1.1E-14 3.7E-19 112.9 16.3 237 8-255 7-291 (338)
63 3ro2_A PINS homolog, G-protein 99.6 4.6E-15 1.6E-19 115.0 13.6 245 7-256 44-332 (338)
64 3sf4_A G-protein-signaling mod 99.6 8.7E-15 3E-19 116.6 15.0 238 9-255 12-295 (406)
65 4i17_A Hypothetical protein; T 99.6 5.4E-13 1.9E-17 98.1 23.1 194 49-255 5-208 (228)
66 3q15_A PSP28, response regulat 99.6 9.3E-14 3.2E-18 110.2 19.8 237 10-255 105-364 (378)
67 3edt_B KLC 2, kinesin light ch 99.6 3.3E-14 1.1E-18 107.6 15.2 233 17-256 12-281 (283)
68 4i17_A Hypothetical protein; T 99.6 4E-13 1.4E-17 98.8 20.5 155 85-243 5-169 (228)
69 2ooe_A Cleavage stimulation fa 99.6 5.8E-13 2E-17 110.3 23.0 218 23-255 255-491 (530)
70 2xm6_A Protein corresponding t 99.6 4.4E-12 1.5E-16 104.0 27.3 223 5-256 38-288 (490)
71 3edt_B KLC 2, kinesin light ch 99.6 2.6E-13 8.9E-18 102.6 17.3 159 62-220 12-198 (283)
72 2xm6_A Protein corresponding t 99.6 8.1E-12 2.8E-16 102.4 27.4 224 5-257 74-326 (490)
73 4g1t_A Interferon-induced prot 99.6 1.3E-13 4.4E-18 112.3 15.9 190 65-257 227-460 (472)
74 3qky_A Outer membrane assembly 99.6 1.7E-12 5.7E-17 97.6 20.6 197 47-245 11-250 (261)
75 3qky_A Outer membrane assembly 99.5 6.2E-13 2.1E-17 99.9 16.4 173 2-186 11-225 (261)
76 3urz_A Uncharacterized protein 99.5 3.5E-12 1.2E-16 92.5 19.6 177 50-234 3-197 (208)
77 2ooe_A Cleavage stimulation fa 99.5 3.5E-12 1.2E-16 105.6 21.7 204 3-220 269-492 (530)
78 2fo7_A Synthetic consensus TPR 99.5 3.8E-12 1.3E-16 85.0 17.9 129 53-184 3-131 (136)
79 2pzi_A Probable serine/threoni 99.5 6.7E-13 2.3E-17 113.0 17.5 182 17-206 402-583 (681)
80 4g1t_A Interferon-induced prot 99.5 1.3E-12 4.5E-17 106.4 17.9 173 6-185 94-276 (472)
81 1xi4_A Clathrin heavy chain; a 99.5 1.3E-11 4.3E-16 109.0 23.9 205 4-254 1103-1307(1630)
82 2fo7_A Synthetic consensus TPR 99.5 8.2E-12 2.8E-16 83.4 18.0 127 90-218 4-130 (136)
83 1qqe_A Vesicular transport pro 99.5 4.5E-12 1.5E-16 96.9 18.6 198 54-254 40-267 (292)
84 3nf1_A KLC 1, kinesin light ch 99.5 3.2E-12 1.1E-16 98.0 17.5 175 46-220 22-224 (311)
85 2r5s_A Uncharacterized protein 99.5 2.5E-12 8.6E-17 90.8 15.3 164 5-183 5-171 (176)
86 4ga2_A E3 SUMO-protein ligase 99.5 4.9E-13 1.7E-17 91.9 10.4 142 60-205 6-148 (150)
87 1hz4_A MALT regulatory protein 99.5 2.9E-11 9.8E-16 95.5 21.9 237 10-255 18-281 (373)
88 3urz_A Uncharacterized protein 99.4 1.1E-11 3.6E-16 90.0 16.9 167 88-261 5-189 (208)
89 2pzi_A Probable serine/threoni 99.4 4.2E-12 1.4E-16 108.1 16.7 173 62-242 402-583 (681)
90 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.4E-10 4.7E-15 85.2 22.0 188 50-256 3-213 (225)
91 1hz4_A MALT regulatory protein 99.4 3.6E-11 1.2E-15 95.0 20.1 241 9-255 56-321 (373)
92 2r5s_A Uncharacterized protein 99.4 6.2E-12 2.1E-16 88.7 14.1 162 53-218 8-171 (176)
93 3qou_A Protein YBBN; thioredox 99.4 3.1E-11 1.1E-15 92.0 18.6 171 83-255 113-283 (287)
94 4ga2_A E3 SUMO-protein ligase 99.4 2.3E-12 7.9E-17 88.5 11.1 145 93-242 3-149 (150)
95 2vsy_A XCC0866; transferase, g 99.4 3E-11 1E-15 100.9 19.0 155 19-187 2-159 (568)
96 1qqe_A Vesicular transport pro 99.4 8.8E-12 3E-16 95.3 14.5 202 9-218 40-267 (292)
97 3ulq_A Response regulator aspa 99.4 5.6E-11 1.9E-15 94.3 19.5 197 57-253 109-332 (383)
98 3qou_A Protein YBBN; thioredox 99.4 3E-11 1E-15 92.1 17.1 166 50-219 116-283 (287)
99 3mv2_B Coatomer subunit epsilo 99.4 1.4E-10 4.6E-15 88.0 20.1 184 70-261 85-285 (310)
100 1xi4_A Clathrin heavy chain; a 99.4 1.7E-10 5.8E-15 102.1 22.7 197 8-253 1051-1247(1630)
101 2vsy_A XCC0866; transferase, g 99.4 8.5E-11 2.9E-15 98.1 19.9 153 64-220 2-157 (568)
102 2yhc_A BAMD, UPF0169 lipoprote 99.4 4.5E-11 1.5E-15 87.7 15.5 187 7-220 5-213 (225)
103 3q15_A PSP28, response regulat 99.3 5.9E-10 2E-14 88.2 21.9 197 55-252 105-328 (378)
104 3e4b_A ALGK; tetratricopeptide 99.3 1.8E-10 6.2E-15 93.4 18.2 156 89-257 178-352 (452)
105 3rjv_A Putative SEL1 repeat pr 99.3 9.7E-10 3.3E-14 79.8 20.4 177 69-258 4-199 (212)
106 1hh8_A P67PHOX, NCF-2, neutrop 99.3 5.5E-10 1.9E-14 80.9 19.0 130 51-186 6-151 (213)
107 3e4b_A ALGK; tetratricopeptide 99.3 2.8E-09 9.6E-14 86.5 23.4 223 5-258 140-389 (452)
108 3mv2_B Coatomer subunit epsilo 99.3 2.2E-09 7.5E-14 81.4 20.7 184 25-227 85-286 (310)
109 3rjv_A Putative SEL1 repeat pr 99.3 6.9E-10 2.3E-14 80.6 17.4 161 50-220 17-197 (212)
110 3dra_A Protein farnesyltransfe 99.3 2.1E-09 7.1E-14 82.1 20.4 227 14-255 40-286 (306)
111 3u3w_A Transcriptional activat 99.3 2.1E-09 7E-14 82.1 20.5 163 92-254 80-264 (293)
112 4e6h_A MRNA 3'-END-processing 99.3 2E-09 6.8E-14 90.9 21.7 218 23-256 326-570 (679)
113 2ifu_A Gamma-SNAP; membrane fu 99.3 3E-10 1E-14 87.4 15.4 193 53-248 38-253 (307)
114 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.7E-15 88.7 12.6 195 50-256 3-199 (281)
115 2lni_A Stress-induced-phosphop 99.2 1E-09 3.4E-14 73.0 15.9 123 45-170 10-132 (133)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.8E-09 9.5E-14 77.2 19.5 129 8-153 8-152 (213)
117 1a17_A Serine/threonine protei 99.2 1.1E-09 3.7E-14 75.9 16.6 126 90-217 16-143 (166)
118 4gco_A Protein STI-1; structur 99.2 9.2E-10 3.2E-14 73.0 15.2 109 51-162 13-121 (126)
119 1a17_A Serine/threonine protei 99.2 1.8E-09 6.2E-14 74.8 17.2 132 50-184 12-145 (166)
120 2vyi_A SGTA protein; chaperone 99.2 7.4E-10 2.5E-14 73.3 14.3 121 49-172 10-130 (131)
121 3gw4_A Uncharacterized protein 99.2 9.6E-10 3.3E-14 78.9 15.5 158 61-220 2-176 (203)
122 1na0_A Designed protein CTPR3; 99.2 2.3E-09 7.7E-14 70.3 15.8 113 51-166 9-121 (125)
123 2qfc_A PLCR protein; TPR, HTH, 99.2 1.4E-08 4.8E-13 77.4 22.4 166 89-254 77-264 (293)
124 2ifu_A Gamma-SNAP; membrane fu 99.2 1.5E-09 5.1E-14 83.5 17.0 174 64-254 29-222 (307)
125 2fbn_A 70 kDa peptidylprolyl i 99.2 7.8E-11 2.7E-15 84.6 9.2 155 8-174 6-174 (198)
126 3dra_A Protein farnesyltransfe 99.2 2.8E-09 9.7E-14 81.4 18.0 216 2-233 63-299 (306)
127 1p5q_A FKBP52, FK506-binding p 99.2 1.2E-10 4E-15 90.8 10.4 87 123-210 197-283 (336)
128 4gco_A Protein STI-1; structur 99.2 1.2E-09 4.2E-14 72.4 13.9 97 88-185 14-110 (126)
129 1na0_A Designed protein CTPR3; 99.2 3.5E-09 1.2E-13 69.3 15.8 98 87-185 9-106 (125)
130 2qfc_A PLCR protein; TPR, HTH, 99.2 1.1E-08 3.8E-13 78.0 20.7 167 53-219 77-265 (293)
131 2e2e_A Formate-dependent nitri 99.2 9.2E-10 3.2E-14 77.4 13.5 122 62-186 21-145 (177)
132 2lni_A Stress-induced-phosphop 99.2 3.3E-09 1.1E-13 70.4 15.3 120 84-205 13-132 (133)
133 3gw4_A Uncharacterized protein 99.2 2.8E-09 9.6E-14 76.4 15.6 157 98-255 3-175 (203)
134 3gyz_A Chaperone protein IPGC; 99.2 8.7E-10 3E-14 75.4 12.0 99 86-185 35-133 (151)
135 2vgx_A Chaperone SYCD; alterna 99.1 1.1E-09 3.7E-14 74.8 12.5 99 86-185 20-118 (148)
136 4f3v_A ESX-1 secretion system 99.1 2.3E-09 7.9E-14 80.2 15.0 204 10-233 11-247 (282)
137 3u3w_A Transcriptional activat 99.1 1.8E-08 6E-13 76.9 20.3 167 53-219 77-265 (293)
138 3gyz_A Chaperone protein IPGC; 99.1 6.1E-10 2.1E-14 76.2 10.9 103 48-153 33-135 (151)
139 4e6h_A MRNA 3'-END-processing 99.1 2E-09 6.7E-14 90.9 16.1 206 3-220 340-570 (679)
140 2vyi_A SGTA protein; chaperone 99.1 2.9E-09 9.8E-14 70.4 13.9 117 87-205 12-128 (131)
141 2vgx_A Chaperone SYCD; alterna 99.1 2.3E-09 8E-14 73.1 13.2 99 121-220 20-118 (148)
142 2e2e_A Formate-dependent nitri 99.1 1.7E-09 5.8E-14 76.0 12.7 121 98-220 21-144 (177)
143 3q7a_A Farnesyltransferase alp 99.1 2.3E-08 8E-13 77.2 19.6 228 13-255 61-330 (349)
144 1p5q_A FKBP52, FK506-binding p 99.1 8.5E-09 2.9E-13 80.3 17.2 131 50-183 146-292 (336)
145 2xcb_A PCRH, regulatory protei 99.1 3.1E-09 1.1E-13 71.9 12.9 101 50-153 17-117 (142)
146 2c2l_A CHIP, carboxy terminus 99.1 4.1E-10 1.4E-14 85.5 9.0 195 4-219 2-198 (281)
147 4f3v_A ESX-1 secretion system 99.1 1.6E-09 5.4E-14 81.1 11.8 187 63-256 18-237 (282)
148 3upv_A Heat shock protein STI1 99.1 8.3E-09 2.8E-13 68.2 14.1 96 53-151 6-101 (126)
149 1elw_A TPR1-domain of HOP; HOP 99.1 2E-08 7E-13 64.9 15.5 108 51-161 4-111 (118)
150 3upv_A Heat shock protein STI1 99.1 1.3E-08 4.6E-13 67.1 14.8 98 87-185 4-101 (126)
151 3sz7_A HSC70 cochaperone (SGT) 99.0 2E-08 6.7E-13 69.7 15.0 107 48-157 8-114 (164)
152 2xcb_A PCRH, regulatory protei 99.0 1.2E-08 4E-13 69.0 13.2 99 86-185 17-115 (142)
153 2fbn_A 70 kDa peptidylprolyl i 99.0 1.1E-09 3.8E-14 78.5 8.4 149 58-210 11-175 (198)
154 3sz7_A HSC70 cochaperone (SGT) 99.0 3.1E-08 1.1E-12 68.6 15.5 101 84-185 8-108 (164)
155 1elw_A TPR1-domain of HOP; HOP 99.0 5.1E-08 1.7E-12 63.0 15.5 98 87-185 4-101 (118)
156 3q49_B STIP1 homology and U bo 99.0 1.7E-08 5.8E-13 67.5 13.3 99 49-150 7-105 (137)
157 2dba_A Smooth muscle cell asso 99.0 7.3E-08 2.5E-12 65.1 16.7 115 48-166 25-143 (148)
158 2kck_A TPR repeat; tetratricop 99.0 8.8E-09 3E-13 66.1 11.3 96 52-150 7-105 (112)
159 3dss_A Geranylgeranyl transfer 99.0 5.9E-07 2E-11 69.1 22.7 223 15-255 38-303 (331)
160 4gcn_A Protein STI-1; structur 99.0 2.1E-08 7.2E-13 66.4 13.0 95 89-184 10-111 (127)
161 3q49_B STIP1 homology and U bo 99.0 3.2E-08 1.1E-12 66.2 14.0 101 84-185 6-106 (137)
162 4gcn_A Protein STI-1; structur 99.0 3.1E-08 1.1E-12 65.6 13.6 109 122-233 8-122 (127)
163 1elr_A TPR2A-domain of HOP; HO 99.0 1.5E-08 5.1E-13 66.9 12.0 94 90-184 7-107 (131)
164 2kck_A TPR repeat; tetratricop 99.0 2.1E-08 7.2E-13 64.3 11.9 101 86-187 5-108 (112)
165 4b4t_Q 26S proteasome regulato 98.9 1.6E-07 5.5E-12 75.4 18.3 213 7-219 5-244 (434)
166 1elr_A TPR2A-domain of HOP; HO 98.9 3.7E-08 1.3E-12 65.0 12.2 114 122-238 4-123 (131)
167 4b4t_Q 26S proteasome regulato 98.9 1.5E-07 5.1E-12 75.6 17.3 199 57-255 10-244 (434)
168 3q7a_A Farnesyltransferase alp 98.9 1.6E-07 5.6E-12 72.6 16.4 217 2-234 84-344 (349)
169 2dba_A Smooth muscle cell asso 98.9 1.8E-07 6E-12 63.2 14.8 99 85-185 26-128 (148)
170 1hxi_A PEX5, peroxisome target 98.9 4.4E-08 1.5E-12 64.3 11.0 96 53-151 19-114 (121)
171 2xev_A YBGF; tetratricopeptide 98.8 3E-07 1E-11 60.6 14.6 95 56-153 7-107 (129)
172 1hxi_A PEX5, peroxisome target 98.8 8.1E-08 2.8E-12 63.0 11.5 95 90-185 20-114 (121)
173 1wao_1 Serine/threonine protei 98.8 8E-08 2.7E-12 78.4 13.5 123 55-180 10-134 (477)
174 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.4E-07 4.8E-12 76.6 14.9 123 87-211 268-405 (457)
175 1wao_1 Serine/threonine protei 98.8 6.3E-09 2.2E-13 84.9 6.7 124 90-215 9-134 (477)
176 1ihg_A Cyclophilin 40; ppiase 98.8 1.5E-07 5E-12 74.3 14.0 138 53-212 225-362 (370)
177 2xev_A YBGF; tetratricopeptide 98.8 7.1E-07 2.4E-11 58.8 15.2 93 92-185 7-105 (129)
178 3ro3_A PINS homolog, G-protein 98.8 1.7E-07 5.9E-12 64.1 12.6 130 89-218 11-156 (164)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 2.7E-07 9.2E-12 74.9 15.5 132 50-184 267-414 (457)
180 3ro3_A PINS homolog, G-protein 98.8 2.3E-07 8E-12 63.4 13.2 135 122-256 9-158 (164)
181 3rkv_A Putative peptidylprolyl 98.8 2.8E-07 9.4E-12 63.6 13.3 64 122-185 63-126 (162)
182 3rkv_A Putative peptidylprolyl 98.8 1.7E-07 5.8E-12 64.7 12.1 106 50-156 10-131 (162)
183 3dss_A Geranylgeranyl transfer 98.8 1.3E-05 4.3E-10 61.8 22.9 202 52-261 27-270 (331)
184 3k9i_A BH0479 protein; putativ 98.8 3.1E-08 1.1E-12 64.5 7.3 61 89-150 29-89 (117)
185 1ihg_A Cyclophilin 40; ppiase 98.8 3.1E-07 1.1E-11 72.4 14.4 138 89-248 225-362 (370)
186 2if4_A ATFKBP42; FKBP-like, al 98.7 1.1E-07 3.7E-12 74.1 10.4 148 51-219 179-327 (338)
187 3k9i_A BH0479 protein; putativ 98.7 6.5E-08 2.2E-12 63.0 7.4 86 100-185 3-90 (117)
188 2if4_A ATFKBP42; FKBP-like, al 98.6 2.7E-07 9.1E-12 71.9 9.7 148 87-256 179-328 (338)
189 2hr2_A Hypothetical protein; a 98.6 1.6E-06 5.5E-11 59.0 12.1 93 90-184 14-130 (159)
190 1dce_A Protein (RAB geranylger 98.5 1.8E-05 6E-10 66.0 19.6 173 65-243 43-242 (567)
191 2hr2_A Hypothetical protein; a 98.5 5E-06 1.7E-10 56.6 12.5 102 51-153 11-133 (159)
192 2l6j_A TPR repeat-containing p 98.5 1.5E-06 5.2E-11 55.4 9.7 65 88-153 5-69 (111)
193 1na3_A Designed protein CTPR2; 98.5 4E-06 1.4E-10 51.3 11.1 75 89-164 11-85 (91)
194 2kat_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 55.7 9.8 80 69-151 3-82 (115)
195 2uy1_A Cleavage stimulation fa 98.4 3.1E-05 1.1E-09 63.4 18.4 204 23-255 196-412 (493)
196 3n71_A Histone lysine methyltr 98.4 7.5E-06 2.6E-10 66.7 14.4 125 96-220 318-464 (490)
197 2kat_A Uncharacterized protein 98.4 4.4E-06 1.5E-10 53.9 10.8 80 105-185 3-82 (115)
198 3n71_A Histone lysine methyltr 98.4 2.5E-06 8.7E-11 69.5 11.5 125 61-185 319-464 (490)
199 1dce_A Protein (RAB geranylger 98.4 1.7E-05 5.7E-10 66.1 16.1 174 19-207 42-242 (567)
200 1klx_A Cysteine rich protein B 98.4 3.5E-05 1.2E-09 51.5 15.0 110 101-220 9-126 (138)
201 1zu2_A Mitochondrial import re 98.4 1.7E-06 5.9E-11 58.7 8.0 56 138-195 62-128 (158)
202 3ma5_A Tetratricopeptide repea 98.4 5.2E-06 1.8E-10 52.2 9.5 60 88-148 8-67 (100)
203 2l6j_A TPR repeat-containing p 98.4 8.2E-07 2.8E-11 56.7 5.8 93 50-145 3-101 (111)
204 1na3_A Designed protein CTPR2; 98.3 1.6E-05 5.4E-10 48.5 10.7 83 50-135 8-90 (91)
205 1klx_A Cysteine rich protein B 98.3 5.9E-05 2E-09 50.4 14.1 111 65-186 9-127 (138)
206 2uy1_A Cleavage stimulation fa 98.3 4.3E-05 1.5E-09 62.6 15.1 191 3-219 210-412 (493)
207 3ma5_A Tetratricopeptide repea 98.2 1.2E-05 4.1E-10 50.4 9.1 66 119-184 4-69 (100)
208 1zu2_A Mitochondrial import re 98.2 1E-05 3.5E-10 54.9 9.1 113 134-256 14-147 (158)
209 3mkq_A Coatomer beta'-subunit; 98.1 0.00059 2E-08 59.2 20.2 156 13-217 606-762 (814)
210 1wy6_A Hypothetical protein ST 97.9 0.0015 5.1E-08 42.6 14.7 140 98-259 18-157 (172)
211 3ly7_A Transcriptional activat 97.9 0.0036 1.2E-07 48.6 17.9 142 84-231 191-347 (372)
212 2kc7_A BFR218_protein; tetratr 97.8 0.00039 1.3E-08 43.0 10.4 56 59-116 8-64 (99)
213 3ly7_A Transcriptional activat 97.8 0.0018 6.1E-08 50.3 14.8 135 119-256 191-339 (372)
214 2kc7_A BFR218_protein; tetratr 97.7 0.00046 1.6E-08 42.7 9.2 57 96-153 9-66 (99)
215 3qwp_A SET and MYND domain-con 97.7 0.00038 1.3E-08 55.9 10.4 61 123-183 330-398 (429)
216 3qww_A SET and MYND domain-con 97.7 0.00024 8.3E-09 56.9 9.0 84 65-148 312-408 (433)
217 3qww_A SET and MYND domain-con 97.6 0.00029 1E-08 56.5 9.3 84 136-219 312-410 (433)
218 3bee_A Putative YFRE protein; 97.6 0.0013 4.5E-08 40.4 10.3 15 98-112 54-68 (93)
219 3qwp_A SET and MYND domain-con 97.6 0.00066 2.2E-08 54.5 10.6 92 129-220 294-400 (429)
220 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0019 6.4E-08 40.6 10.5 63 89-151 7-75 (104)
221 3bee_A Putative YFRE protein; 97.5 0.0028 9.6E-08 38.9 10.0 46 139-184 26-71 (93)
222 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0035 1.2E-07 39.3 10.4 75 49-124 3-82 (104)
223 3mkq_B Coatomer subunit alpha; 97.4 0.014 4.8E-07 40.2 15.9 101 97-217 15-115 (177)
224 1pc2_A Mitochondria fission pr 97.4 0.0053 1.8E-07 41.2 11.3 79 105-184 16-99 (152)
225 3u64_A Protein TP_0956; tetrat 97.4 0.011 3.9E-07 44.2 14.0 84 103-188 179-272 (301)
226 3mkq_B Coatomer subunit alpha; 97.3 0.017 5.8E-07 39.8 14.2 100 60-180 14-113 (177)
227 3mkq_A Coatomer beta'-subunit; 97.3 0.02 6.8E-07 49.6 16.8 131 10-183 633-763 (814)
228 1pc2_A Mitochondria fission pr 97.2 0.0084 2.9E-07 40.3 11.0 86 137-226 13-103 (152)
229 3u64_A Protein TP_0956; tetrat 97.1 0.0096 3.3E-07 44.6 11.0 108 138-254 179-296 (301)
230 4h7y_A Dual specificity protei 97.0 0.039 1.3E-06 36.8 12.6 36 49-86 11-52 (161)
231 4h7y_A Dual specificity protei 96.8 0.034 1.2E-06 37.1 10.6 103 85-188 11-126 (161)
232 1nzn_A CGI-135 protein, fissio 96.6 0.023 7.8E-07 36.8 8.7 19 200-218 83-101 (126)
233 1nzn_A CGI-135 protein, fissio 96.6 0.048 1.7E-06 35.2 10.2 90 95-185 9-103 (126)
234 3lvg_A Clathrin heavy chain 1; 96.4 1.4E-05 4.9E-10 63.6 -8.5 203 4-239 52-275 (624)
235 4gns_B Protein CSD3, chitin bi 96.4 0.068 2.3E-06 45.9 12.6 126 126-253 252-397 (754)
236 1wy6_A Hypothetical protein ST 96.2 0.14 4.8E-06 33.5 14.8 138 61-220 17-154 (172)
237 4gns_B Protein CSD3, chitin bi 96.1 0.078 2.7E-06 45.5 11.7 127 53-182 250-397 (754)
238 4fhn_B Nucleoporin NUP120; pro 96.1 0.8 2.7E-05 41.7 18.6 190 56-254 817-1048(1139)
239 4ady_A RPN2, 26S proteasome re 96.0 0.4 1.4E-05 42.2 15.5 193 16-219 384-588 (963)
240 1v54_E Cytochrome C oxidase po 95.9 0.13 4.4E-06 31.6 8.6 63 171-235 25-87 (109)
241 2ff4_A Probable regulatory pro 95.8 0.067 2.3E-06 42.3 9.5 69 160-229 175-247 (388)
242 4fhn_B Nucleoporin NUP120; pro 95.8 0.32 1.1E-05 44.3 14.6 178 4-183 840-1048(1139)
243 3txn_A 26S proteasome regulato 95.7 0.56 1.9E-05 37.0 17.6 169 9-183 22-208 (394)
244 2ff4_A Probable regulatory pro 95.5 0.12 4.1E-06 40.9 9.8 57 91-148 175-231 (388)
245 3ffl_A Anaphase-promoting comp 95.0 0.09 3.1E-06 35.7 6.6 67 4-79 18-91 (167)
246 2y69_E Cytochrome C oxidase su 95.0 0.32 1.1E-05 31.6 8.6 62 172-235 69-130 (152)
247 4b4t_P 26S proteasome regulato 95.0 1.2 3.9E-05 36.0 20.1 197 19-220 29-247 (445)
248 4ady_A RPN2, 26S proteasome re 94.8 1.6 5.3E-05 38.6 15.0 158 56-219 495-657 (963)
249 3ffl_A Anaphase-promoting comp 94.5 0.44 1.5E-05 32.4 8.8 115 125-253 23-148 (167)
250 3o48_A Mitochondria fission 1 94.0 0.75 2.6E-05 29.9 9.5 72 152-226 36-110 (134)
251 1v54_E Cytochrome C oxidase po 93.8 0.68 2.3E-05 28.5 10.3 47 67-114 26-72 (109)
252 4b4t_P 26S proteasome regulato 93.4 2.5 8.6E-05 34.0 19.9 190 65-255 30-246 (445)
253 3lpz_A GET4 (YOR164C homolog); 93.3 2.2 7.4E-05 32.8 21.3 130 56-205 40-181 (336)
254 1zbp_A Hypothetical protein VP 93.0 0.87 3E-05 33.7 8.8 52 98-150 8-59 (273)
255 4b4t_R RPN7, 26S proteasome re 93.0 0.5 1.7E-05 37.9 8.4 58 56-113 136-194 (429)
256 4b4t_R RPN7, 26S proteasome re 92.7 1.7 5.7E-05 34.8 11.0 97 124-220 133-237 (429)
257 2y69_E Cytochrome C oxidase su 92.3 1.5 5.3E-05 28.5 10.3 44 106-149 72-115 (152)
258 3lvg_A Clathrin heavy chain 1; 91.4 0.0076 2.6E-07 48.5 -3.8 186 3-214 80-285 (624)
259 2wpv_A GET4, UPF0363 protein Y 90.9 4.3 0.00015 30.9 19.5 142 59-204 21-178 (312)
260 1zbp_A Hypothetical protein VP 90.6 4 0.00014 30.2 15.0 54 132-185 7-60 (273)
261 3o48_A Mitochondria fission 1 90.4 2.5 8.6E-05 27.5 9.5 67 119-185 37-107 (134)
262 1y8m_A FIS1; mitochondria, unk 90.1 2.8 9.7E-05 27.6 12.5 70 154-226 37-109 (144)
263 3txn_A 26S proteasome regulato 88.8 7.5 0.00026 30.7 21.3 168 52-220 20-210 (394)
264 3esl_A Checkpoint serine/threo 88.8 4.7 0.00016 28.3 10.2 56 135-190 92-149 (202)
265 3eiq_C Programmed cell death p 87.5 2.8 9.7E-05 32.5 7.8 64 194-259 220-285 (358)
266 2nsz_A Programmed cell death p 87.0 4.5 0.00016 26.1 8.1 63 125-187 10-74 (129)
267 3esl_A Checkpoint serine/threo 86.6 6.5 0.00022 27.6 10.3 57 169-226 92-149 (202)
268 2ion_A PDCD4, programmed cell 85.9 3.6 0.00012 27.5 6.8 24 126-149 13-36 (152)
269 2uwj_G Type III export protein 85.4 4.6 0.00016 24.7 8.0 78 102-186 21-98 (115)
270 1y8m_A FIS1; mitochondria, unk 85.1 6.2 0.00021 26.0 11.6 69 85-153 37-108 (144)
271 2p58_C Putative type III secre 85.0 4.9 0.00017 24.7 8.8 77 102-185 22-98 (116)
272 1wdy_A 2-5A-dependent ribonucl 84.5 2.1 7.3E-05 31.4 5.8 20 56-75 7-26 (285)
273 1k1a_A B-cell lymphoma 3-encod 81.9 5.6 0.00019 28.3 7.1 185 57-261 12-210 (241)
274 2uwj_G Type III export protein 81.6 7 0.00024 24.0 7.0 76 137-219 21-96 (115)
275 3lpz_A GET4 (YOR164C homolog); 81.5 16 0.00055 28.1 19.6 48 65-112 10-60 (336)
276 3eiq_C Programmed cell death p 81.3 17 0.00058 28.2 13.8 79 159-239 220-300 (358)
277 2p58_C Putative type III secre 81.0 7.5 0.00026 23.9 7.8 76 137-219 22-97 (116)
278 4a1g_A Mitotic checkpoint seri 80.8 10 0.00035 25.3 9.7 49 141-189 84-134 (152)
279 2wvi_A Mitotic checkpoint seri 77.6 14 0.00048 25.0 9.4 51 141-191 79-131 (164)
280 2zu6_B Programmed cell death p 76.8 22 0.00075 26.9 14.1 69 159-229 169-239 (307)
281 3kea_A K1L; tropism, ANK repea 76.8 12 0.00041 27.7 7.6 145 58-216 35-183 (285)
282 1qsa_A Protein (soluble lytic 76.4 34 0.0012 28.9 26.0 221 12-255 78-347 (618)
283 2d2s_A Exocyst complex compone 75.5 20 0.00069 25.9 9.0 89 128-219 24-119 (235)
284 4gq2_M Nucleoporin NUP120; bet 75.2 46 0.0016 29.8 13.1 47 124-170 899-950 (950)
285 2d2s_A Exocyst complex compone 75.1 21 0.00072 25.8 8.4 91 56-149 23-118 (235)
286 2ion_A PDCD4, programmed cell 74.3 13 0.00044 24.8 6.4 64 53-118 11-76 (152)
287 4b4t_S RPN3, 26S proteasome re 74.3 35 0.0012 28.0 12.4 67 87-153 231-301 (523)
288 4ets_A Ferric uptake regulatio 73.6 11 0.00037 25.5 6.0 69 68-137 14-84 (162)
289 4b4t_S RPN3, 26S proteasome re 73.0 28 0.00096 28.6 9.1 67 50-116 230-299 (523)
290 3ltj_A Alpharep-4; protein eng 68.7 25 0.00086 24.1 16.2 172 50-242 27-198 (201)
291 1ug3_A EIF4GI, eukaryotic prot 68.3 38 0.0013 26.0 11.5 62 54-118 14-77 (339)
292 4aez_C MAD3, mitotic spindle c 67.7 31 0.0011 24.7 8.0 50 140-189 132-183 (223)
293 2nsz_A Programmed cell death p 67.1 22 0.00076 22.8 8.8 74 158-233 9-84 (129)
294 2ijq_A Hypothetical protein; s 65.9 28 0.00095 23.5 7.9 49 205-254 46-102 (161)
295 3aji_A 26S proteasome non-ATPa 64.7 19 0.00065 25.2 6.2 181 58-261 10-199 (231)
296 4a1g_A Mitotic checkpoint seri 64.6 28 0.00097 23.2 10.5 68 83-153 64-132 (152)
297 1ug3_A EIF4GI, eukaryotic prot 64.1 47 0.0016 25.5 8.8 93 10-114 15-112 (339)
298 3hra_A Ankyrin repeat family p 63.7 32 0.0011 23.4 8.3 18 15-32 11-28 (201)
299 1wdy_A 2-5A-dependent ribonucl 63.5 15 0.00053 26.6 5.7 85 168-261 191-280 (285)
300 3bu8_A Telomeric repeat-bindin 63.2 38 0.0013 24.1 7.8 50 67-116 88-143 (235)
301 3e3v_A Regulatory protein RECX 62.3 35 0.0012 23.4 11.6 113 139-254 50-164 (177)
302 3ltm_A Alpha-REP4; protein eng 62.1 36 0.0012 23.5 15.9 173 49-242 31-203 (211)
303 2fe3_A Peroxide operon regulat 62.0 30 0.001 22.6 6.5 55 82-137 17-71 (145)
304 2wpv_A GET4, UPF0363 protein Y 61.2 52 0.0018 25.0 19.5 174 66-255 12-216 (312)
305 3ltm_A Alpha-REP4; protein eng 61.1 38 0.0013 23.4 18.7 154 85-255 31-184 (211)
306 3ltj_A Alpharep-4; protein eng 61.0 37 0.0013 23.2 19.2 154 85-255 26-179 (201)
307 1bpo_A Protein (clathrin); cla 60.9 66 0.0022 26.1 10.1 94 82-176 356-449 (494)
308 3eyy_A Putative iron uptake re 60.9 28 0.00096 22.8 5.9 54 81-136 13-66 (145)
309 2wvi_A Mitotic checkpoint seri 60.2 37 0.0013 23.0 11.2 47 106-152 79-126 (164)
310 3eyy_A Putative iron uptake re 59.9 34 0.0011 22.4 6.5 30 174-203 35-64 (145)
311 2xig_A Ferric uptake regulatio 59.8 34 0.0012 22.5 7.9 45 161-205 31-75 (150)
312 1oai_A Nuclear RNA export fact 59.3 8.8 0.0003 20.8 2.6 23 65-87 34-56 (59)
313 4gq2_M Nucleoporin NUP120; bet 58.8 1E+02 0.0035 27.6 12.2 48 193-241 899-950 (950)
314 1mzb_A Ferric uptake regulatio 58.3 34 0.0012 22.0 7.0 45 161-205 22-67 (136)
315 2w57_A Ferric uptake regulatio 58.2 37 0.0013 22.4 6.8 14 139-152 34-47 (150)
316 2xig_A Ferric uptake regulatio 57.3 38 0.0013 22.3 6.7 55 82-137 22-76 (150)
317 4aez_C MAD3, mitotic spindle c 57.0 51 0.0017 23.6 9.3 49 105-153 132-181 (223)
318 4ets_A Ferric uptake regulatio 56.7 42 0.0014 22.5 6.8 46 160-205 36-83 (162)
319 2f6m_A Suppressor protein STP2 55.9 24 0.00083 19.6 4.5 43 90-133 5-47 (65)
320 1k1a_A B-cell lymphoma 3-encod 55.8 42 0.0014 23.5 6.7 157 94-261 13-177 (241)
321 2fe3_A Peroxide operon regulat 55.6 40 0.0014 22.0 7.9 13 173-185 38-50 (145)
322 2b7e_A PRE-mRNA processing pro 55.5 12 0.00042 20.3 2.7 29 104-132 3-31 (59)
323 2o03_A Probable zinc uptake re 54.9 30 0.001 22.1 5.2 44 162-205 16-59 (131)
324 3mwm_A ZUR, putative metal upt 54.8 28 0.00094 22.7 5.0 45 161-205 18-62 (139)
325 3eu9_A Huntingtin-interacting 54.0 53 0.0018 22.9 7.3 217 14-258 14-238 (240)
326 3t8k_A Uncharacterized protein 53.1 51 0.0017 22.4 6.8 25 97-121 45-69 (186)
327 1oyz_A Hypothetical protein YI 52.9 63 0.0022 23.5 18.8 122 120-255 140-262 (280)
328 1q2z_A ATP-dependent DNA helic 52.4 27 0.00093 22.1 4.5 53 205-260 41-96 (120)
329 3f3f_C Nucleoporin NUP85; stru 49.9 87 0.003 26.1 8.0 74 170-246 495-568 (570)
330 3l6a_A Eukaryotic translation 49.8 90 0.0031 24.3 9.7 61 89-153 14-79 (364)
331 3bqo_A Telomeric repeat-bindin 49.6 34 0.0012 24.0 4.8 47 103-151 94-146 (211)
332 1rw2_A ATP-dependent DNA helic 48.8 30 0.001 23.1 4.4 53 205-260 72-127 (152)
333 2w57_A Ferric uptake regulatio 48.7 55 0.0019 21.5 6.1 60 148-207 8-68 (150)
334 1wgl_A TOLL-interacting protei 48.0 23 0.00078 19.2 3.1 23 239-261 35-57 (59)
335 1mzb_A Ferric uptake regulatio 47.5 54 0.0018 21.1 6.1 16 102-117 33-48 (136)
336 3r88_A Anthranilate phosphorib 46.1 87 0.003 24.5 7.3 29 157-185 24-54 (377)
337 3hra_A Ankyrin repeat family p 45.4 38 0.0013 22.9 4.9 173 58-244 9-192 (201)
338 2yru_A Steroid receptor RNA ac 43.3 61 0.0021 20.5 5.4 19 200-218 70-88 (118)
339 2etb_A Transient receptor pote 43.0 44 0.0015 23.8 5.2 53 96-149 8-70 (256)
340 2fv2_A RCD1 required for cell 42.4 88 0.003 23.1 6.3 53 201-253 183-235 (268)
341 3i5p_A Nucleoporin NUP170; hel 42.2 1.4E+02 0.0048 24.7 8.2 35 191-226 217-251 (525)
342 3qye_A TBC1 domain family memb 41.6 87 0.003 23.8 6.7 43 178-220 210-252 (331)
343 3f3f_C Nucleoporin NUP85; stru 41.3 1.6E+02 0.0053 24.6 13.2 85 124-210 481-568 (570)
344 2fu4_A Ferric uptake regulatio 40.8 50 0.0017 18.8 6.9 31 210-241 36-66 (83)
345 1wty_A Hypothetical protein TT 40.2 67 0.0023 20.1 7.1 77 137-219 3-80 (119)
346 2ijq_A Hypothetical protein; s 39.6 85 0.0029 21.1 9.1 52 168-219 44-103 (161)
347 3bge_A Predicted ATPase; struc 38.8 99 0.0034 21.7 9.7 36 65-101 21-56 (201)
348 1bpo_A Protein (clathrin); cla 37.8 1.6E+02 0.0056 23.9 13.6 121 100-228 342-462 (494)
349 1ixm_A SPO0B, protein (sporula 37.6 85 0.0029 21.8 5.6 70 171-252 14-83 (192)
350 3ph0_C ASCG; type III secretio 36.9 50 0.0017 17.7 4.1 12 103-114 22-33 (61)
351 3ygs_P Procaspase 9; apoptosis 36.4 70 0.0024 19.2 6.1 35 171-209 52-86 (97)
352 3ctd_A Putative ATPase, AAA fa 35.9 1.2E+02 0.0039 21.6 9.8 63 54-117 35-105 (213)
353 3rjo_A Endoplasmic reticulum a 35.7 1.6E+02 0.0055 23.2 26.2 199 19-239 123-352 (419)
354 4fke_A Aminopeptidase N; zinc 35.6 2.4E+02 0.0082 25.2 16.6 162 55-219 690-859 (909)
355 2p22_A Suppressor protein STP2 35.2 56 0.0019 22.3 4.1 46 88-134 112-157 (174)
356 2o03_A Probable zinc uptake re 35.2 56 0.0019 20.8 4.1 42 95-136 18-59 (131)
357 1qsa_A Protein (soluble lytic 35.1 2.1E+02 0.0071 24.2 22.2 177 65-247 228-433 (618)
358 1s6c_A KV4 potassium channel-i 35.0 98 0.0034 20.5 9.7 21 230-250 159-179 (183)
359 3jxi_A Vanilloid receptor-rela 34.9 70 0.0024 22.8 5.1 23 98-120 13-35 (260)
360 2cwy_A Hypothetical protein TT 34.4 76 0.0026 19.0 6.7 16 170-185 15-30 (94)
361 3mv2_A Coatomer subunit alpha; 34.4 1.5E+02 0.0053 22.6 11.4 46 175-220 189-236 (325)
362 2npu_A FKBP12-rapamycin comple 34.2 92 0.0032 19.9 5.9 56 163-220 47-103 (126)
363 3bqo_A Telomeric repeat-bindin 34.1 85 0.0029 22.0 4.8 48 67-116 94-146 (211)
364 2r9g_A AAA ATPase, central reg 34.1 1.2E+02 0.0042 21.3 11.1 61 56-118 16-84 (204)
365 4g8k_A 2-5A-dependent ribonucl 33.1 1.1E+02 0.0037 22.9 6.1 13 249-261 316-328 (337)
366 3pvs_A Replication-associated 32.8 1.9E+02 0.0065 23.2 13.9 31 83-115 190-220 (447)
367 1ixm_A SPO0B, protein (sporula 32.4 1.1E+02 0.0036 21.3 5.4 23 127-149 37-59 (192)
368 3r88_A Anthranilate phosphorib 32.2 1.8E+02 0.0062 22.7 7.4 62 123-184 24-87 (377)
369 3qil_A Clathrin heavy chain 1; 32.0 58 0.002 20.7 3.5 51 160-213 36-86 (125)
370 3mwm_A ZUR, putative metal upt 32.0 54 0.0019 21.2 3.7 43 94-136 20-62 (139)
371 3aji_A 26S proteasome non-ATPa 31.8 1.3E+02 0.0043 20.8 6.2 151 94-261 10-166 (231)
372 1bd8_A P19INK4D CDK4/6 inhibit 31.7 50 0.0017 21.2 3.6 18 59-76 7-24 (156)
373 3lxu_X Tripeptidyl-peptidase 2 31.6 2.9E+02 0.01 26.0 9.1 78 126-205 1238-1331(1354)
374 2rg8_A Programmed cell death p 31.5 1.2E+02 0.0041 20.4 6.5 25 90-114 13-37 (165)
375 2ko4_A Mediator of RNA polymer 30.1 83 0.0028 18.2 3.6 35 45-79 30-64 (81)
376 4hkm_A Anthranilate phosphorib 30.0 1.9E+02 0.0065 22.3 7.3 50 207-258 21-70 (346)
377 3i5p_A Nucleoporin NUP170; hel 30.0 2.4E+02 0.0081 23.3 8.8 35 226-260 216-250 (525)
378 3kea_A K1L; tropism, ANK repea 29.6 87 0.003 22.9 4.9 112 94-214 35-149 (285)
379 2r9g_A AAA ATPase, central reg 29.4 1.5E+02 0.0051 20.9 11.2 60 98-158 25-89 (204)
380 3t5v_B Nuclear mRNA export pro 29.4 1.4E+02 0.0049 24.0 6.3 62 158-219 178-248 (455)
381 2bn5_A PSI; nuclear protein, s 28.7 51 0.0017 15.3 2.2 21 234-254 9-29 (33)
382 3l6a_A Eukaryotic translation 28.6 2.1E+02 0.0071 22.3 12.0 66 53-120 14-81 (364)
383 3bge_A Predicted ATPase; struc 28.5 1.5E+02 0.0052 20.7 9.9 66 92-157 9-82 (201)
384 2rg8_A Programmed cell death p 28.1 1.4E+02 0.0047 20.1 7.1 59 124-183 12-72 (165)
385 2qq8_A TBC1 domain family memb 27.2 1.4E+02 0.0048 22.7 5.7 43 178-220 215-257 (334)
386 3eu9_A Huntingtin-interacting 27.0 1.4E+02 0.0047 20.6 5.5 179 12-216 45-232 (240)
387 2qfz_A TBC1 domain family memb 26.9 1.7E+02 0.006 22.2 6.3 112 68-183 189-313 (345)
388 3d5l_A Regulatory protein RECX 26.0 1.8E+02 0.0061 20.6 13.7 111 138-251 92-204 (221)
389 3ctd_A Putative ATPase, AAA fa 26.0 1.8E+02 0.0061 20.6 10.8 69 90-158 35-111 (213)
390 2cos_A Serine/threonine protei 25.5 83 0.0028 16.6 3.3 11 243-253 38-48 (54)
391 1u9p_A PARC; unknown function; 25.3 1.3E+02 0.0046 19.0 5.6 35 209-243 73-107 (120)
392 3ljn_A Hypothetical protein; a 25.3 1.5E+02 0.0052 22.4 5.8 156 85-259 16-198 (364)
393 4b4t_O 26S proteasome regulato 24.2 2.6E+02 0.0088 21.9 9.4 87 93-179 82-192 (393)
394 1ya0_A SMG-7 transcript varian 23.8 3E+02 0.01 22.5 10.6 40 137-176 167-206 (497)
395 3v31_A Ankyrin repeat family A 23.7 1.5E+02 0.0052 19.1 7.5 18 59-76 8-25 (167)
396 2qfz_A TBC1 domain family memb 23.7 2.1E+02 0.007 21.8 6.1 76 177-253 230-312 (345)
397 2zu6_B Programmed cell death p 23.6 2.4E+02 0.0082 21.3 14.5 64 194-259 169-234 (307)
398 2pk8_A Uncharacterized protein 23.4 81 0.0028 18.9 2.8 17 245-261 21-37 (103)
399 1n11_A Ankyrin; clathrin, BAND 23.3 2.4E+02 0.0083 21.9 6.8 53 12-76 17-69 (437)
400 1jog_A Hypothetical protein HI 23.1 1.1E+02 0.0038 20.1 3.9 81 172-255 54-141 (146)
401 2crb_A Nuclear receptor bindin 23.0 1.3E+02 0.0045 18.1 4.6 25 193-217 17-41 (97)
402 2xdt_A Endoplasmic reticulum a 22.8 4.1E+02 0.014 23.7 17.8 164 50-220 679-852 (897)
403 1ya0_A SMG-7 transcript varian 22.7 3.2E+02 0.011 22.4 10.8 66 101-167 166-231 (497)
404 2p1h_A APAF-1, apoptotic prote 22.5 1.3E+02 0.0043 17.7 7.0 32 170-205 50-81 (94)
405 2jp7_A MRNA export factor MEX6 22.3 14 0.00048 19.9 -0.5 18 242-260 34-51 (57)
406 2p22_A Suppressor protein STP2 22.0 1.9E+02 0.0064 19.8 4.8 51 154-205 109-159 (174)
407 4f52_E Glomulin; cullin-ring E 21.8 2.1E+02 0.0072 24.1 6.1 84 49-132 26-131 (596)
408 3no6_A Transcriptional activat 21.5 2.3E+02 0.008 20.4 7.8 87 154-242 127-225 (248)
409 3c1d_A Protein ORAA, regulator 21.5 1.8E+02 0.0063 19.2 11.2 99 138-242 46-145 (159)
410 2fv2_A RCD1 required for cell 21.4 1.7E+02 0.0058 21.6 4.8 55 95-149 181-236 (268)
411 1n11_A Ankyrin; clathrin, BAND 21.2 1.7E+02 0.006 22.8 5.5 181 56-261 16-206 (437)
412 2pnn_A Transient receptor pote 20.8 2.1E+02 0.007 20.5 5.5 17 199-215 153-169 (273)
413 2rfa_A Transient receptor pote 20.7 2.1E+02 0.0073 19.6 10.9 187 13-217 7-220 (232)
414 3fap_B FRAP, FKBP12-rapamycin 20.7 1.5E+02 0.0051 17.8 5.7 55 164-220 18-73 (94)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8e-37 Score=249.35 Aligned_cols=188 Identities=12% Similarity=0.116 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC---------HHHHHHHHHHHhhcCCCCC
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL---------LEHALQVFDEMSSFNVQRT 121 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 121 (262)
...++.+|.+|++.|++++|+++|++|.+. |++||..+|+.||.+|++.+. +++|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 346888999999999999999999999997 899999999999999988765 6899999999999999999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
..||+++|.+|++.|++++|.++|++|.+.+. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 240 (262)
|++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999887 9999999999999998763
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.5e-36 Score=244.42 Aligned_cols=191 Identities=18% Similarity=0.261 Sum_probs=168.2
Q ss_pred HHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC---------H
Q 037499 69 EVQQILHQLKHDTRVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK---------I 138 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~ 138 (262)
.+..+.+++.++ +..+. ..+++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. .
T Consensus 8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344555666654 45444 346888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 139 DRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
++|.++|++|...+. ||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 218 MRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 218 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.+. |+.||..||++||.+|++.|++++|.+++++|.+.|+.|+
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 887 9999999999999999999999999999999999999997
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.2e-26 Score=194.58 Aligned_cols=237 Identities=11% Similarity=-0.018 Sum_probs=172.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|.+..++..++..+.+.|++++|.++|+.+.. ..+.+..+|+.++..|.+.|++++|.++|+++.+..
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 403 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVD-----------RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD- 403 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 33444555555555555555555555555421 233467777778888888888888888888777642
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..+.+..+|+.+
T Consensus 404 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 481 (597)
T 2xpi_A 404 -PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481 (597)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4456777888888888888888888888877665 55677788888888888888888888888877767777788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKR----RLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKG 236 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 236 (262)
+..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+. + +.+..+|..+..+
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-S-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-SCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHH
Confidence 88888888888888888887765 55666 667888888888888888888888887764 2 3467788888888
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 037499 237 LCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 237 ~~~~g~~~~a~~~~~~m~~ 255 (262)
|.+.|++++|.+.++++.+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888888888888888776
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-26 Score=193.85 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=210.5
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|++..++..++..+.+.|++++|+++|+.+.. ..+.+..+|..++.++.+.|++++|..+++++.+.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 368 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-----------IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-- 368 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--
Confidence 36677788999999999999999999998843 22347788899999999999999999999999864
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
.+.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++....+.+..+|+.+
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 36678899999999999999999999999998865 56788999999999999999999999999998888889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCCC--HHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKPD--AQVFASLIKGL 237 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~ 237 (262)
+.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999864 3478899999999999999999999999987642 45677 78999999999
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 037499 238 CAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~~g 257 (262)
.+.|++++|.++++++.+.+
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=7.4e-23 Score=163.04 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
...+..++..+...|++++|.+.|+.+.. ..+.+..+|..+...+.+.|++++|+..|+++.+.. +.
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~ 201 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIE-----------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN 201 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence 33444555555555555555555555422 222345556666666666666666666666665532 33
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+...+..+...+...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|++.|+++.+..+.+..+|..+...
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45555666666666666666666666665543 34566777777777777777777777777777666667777777777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 245 (262)
+.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++.+ ..+.+..++..+..+|.+.|++++
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHH
Confidence 778888888888887777653 34666777777777888888888888877764 223456677778888888888888
Q ss_pred HHHHHHHHHH
Q 037499 246 ALGFKEEMVR 255 (262)
Q Consensus 246 a~~~~~~m~~ 255 (262)
|.+.++++.+
T Consensus 358 A~~~~~~a~~ 367 (388)
T 1w3b_A 358 ALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2.3e-22 Score=160.18 Aligned_cols=237 Identities=11% Similarity=0.001 Sum_probs=136.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++.++..++..+.+.|++++|++.|+.+.. ..+.+..+|..+..++.+.|++++|++.|+++.+..
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR-----------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555677777777777777777777777632 223355567777777777777777777776666542
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD------ 155 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------ 155 (262)
+.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+..++...|++++|+..|+++....+.+
T Consensus 132 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 208 (388)
T 1w3b_A 132 --PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208 (388)
T ss_dssp --TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3334455556666666666666666666666543 3345556666666666666666666666555444433
Q ss_pred ----------------------------hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 156 ----------------------------ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 156 ----------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
..++..+...+.+.|++++|...|+++.+.+. .+..+|..+...+.+.|++
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCH
Confidence 44444555555555555555555555554321 1334455555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++.+
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555542 233445555555555555555555555555544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=7.5e-22 Score=160.01 Aligned_cols=237 Identities=12% Similarity=0.003 Sum_probs=203.5
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++..+..++..+.+.|++++|+.+|+.+.. ..+.+..+|..++.++...|++++|+..|+++.+..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVD-----------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 345556688899999999999999999999843 344578999999999999999999999999999863
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTL------------LNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~ 146 (262)
+.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|+
T Consensus 91 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 91 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5668889999999999999999999999999865 4444 566555 444889999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-
Q 037499 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP- 225 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p- 225 (262)
++....+.+..++..++.+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+. .|
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~ 243 (450)
T 2y4t_A 168 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQD 243 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 9999888899999999999999999999999999998863 346789999999999999999999999999864 34
Q ss_pred CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHc
Q 037499 226 DAQVFASL------------IKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 226 ~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+...+..+ ...|...|++++|.++|+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44445444 78899999999999999999873
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=9.2e-22 Score=155.39 Aligned_cols=235 Identities=9% Similarity=-0.019 Sum_probs=199.1
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
+...+..++..+.+.|++++|+..|+.+.. ..+.+..+|..+..++...|++++|+..|+++.+.. +
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 130 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL-----------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--P 130 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C
Confidence 445599999999999999999999999843 345588999999999999999999999999999853 5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF----------NTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (262)
.+..++..+..+|...|++++|++.|+++.+.. +.+...+ ..+...+...|++++|+.+|+++....+.
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 668899999999999999999999999998764 2222333 34578899999999999999999988775
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499 155 --DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFAS 232 (262)
Q Consensus 155 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 232 (262)
+..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+. .+.+..++..
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYN 286 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHH
Confidence 89999999999999999999999999999874 346789999999999999999999999999875 2335888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 037499 233 LIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+..+|.+.|++++|.+.++++.+.
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.3e-21 Score=156.25 Aligned_cols=235 Identities=11% Similarity=-0.003 Sum_probs=142.7
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|.++..+..++..+.+.|++++|+..|+.+.. ..+.+..+|..++.++.+.|++++|++.|+++.+..
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 124 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-----------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN- 124 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 45556667777777777777777777777633 223356677777777777777777777777776532
Q ss_pred CCccH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037499 83 VVPEE---IIFCNV------------ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQI 147 (262)
Q Consensus 83 ~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 147 (262)
+.+. ..+..+ ...+.+.|++++|++.|+++.+.. +.+..++..+..+|.+.|++++|+++|++
T Consensus 125 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 125 -PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred -CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2333 444443 333666677777777777766654 44556666666666666666666666666
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHH------------HHHHHhhCCHHHHHHHHH
Q 037499 148 MEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTL------------IYGLCLELRVDEALKLKE 215 (262)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~ 215 (262)
+....+.+..+|..++..|...|++++|...|+++..... .+...+..+ ...+.+.|++++|...|+
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6665555666666666666666666666666666665421 122223222 455556666666666666
Q ss_pred HHHHhcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 216 DMMRVYNVKPD-----AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 216 ~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++.+. .|+ ..+|..+..++.+.|++++|.+.++++.+
T Consensus 282 ~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 282 SVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65543 232 23455555555566666666666555544
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.6e-21 Score=147.12 Aligned_cols=235 Identities=8% Similarity=-0.044 Sum_probs=111.2
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~ 83 (262)
++..+..++..+.+.|++++|...++.+.. ..+.+...|..+...+...| ++++|+..|++..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-- 121 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVD-----------LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-- 121 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--
Confidence 333444444444444444444444444421 12223444444555555555 4555555555544421
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...|...|++++|.+.+++.....+.+..++..+.
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 2233444455555555555555555555554443 223344444555555555555555555555554444445555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCC--------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRR--------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
..+...|++++|...+++..+.. .+.+..++..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 278 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGY 278 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence 55555555555555555544321 0122334445555555555555555555555443 1223444555555
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 037499 236 GLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 236 ~~~~~g~~~~a~~~~~~m~~ 255 (262)
+|...|++++|.+.+++..+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhccHHHHHHHHHHHHc
Confidence 55555555555555555443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.6e-20 Score=143.26 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=208.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
+.++..+..++..+...|++++|+++|+.+.. ..+.+...+..++.++...|++++|+.+++++.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 86 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVME-----------KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY- 86 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 56777888999999999999999999999843 334466778888899999999999999999999853
Q ss_pred CCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 83 VVPEEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+.+...+..+...+...| ++++|.+.|++..+.. +.+..+|..+..++...|++++|+..|++.....+.+...+..
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 556788999999999999 9999999999999875 5667889999999999999999999999999988877888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-------CCCCHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-------VKPDAQVFASLI 234 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~ 234 (262)
+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.+..++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 9999999999999999999999874 34678899999999999999999999999887521 133467899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 037499 235 KGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 235 ~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.+|...|++++|...+++..+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999998874
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=4.7e-20 Score=145.52 Aligned_cols=234 Identities=12% Similarity=0.046 Sum_probs=200.0
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
...+..++..+.+.|++++|+..|+.+.. ..+.+..+|..+..++...|++++|+..|+++.+.. +.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~ 130 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-----------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PD 130 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHH-----------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CC
Confidence 46688999999999999999999999844 344578899999999999999999999999998853 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH---------------HHHHHHhcCCHHHHHHHHHHHHh
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT---------------LLNAMLTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~ 150 (262)
+..++..+..++...|++++|++.|+++.+.. +.+...+.. .+..+...|++++|+..|+++..
T Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 131 NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 78889999999999999999999999998865 333333321 23344489999999999999988
Q ss_pred cCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499 151 YVSP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 151 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 228 (262)
..+. +..++..+...|.+.|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+. .+.+..
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 286 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIR 286 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHH
Confidence 8775 78999999999999999999999999998863 335778999999999999999999999999875 244678
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 229 VFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 229 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.+..+..+|.+.|++++|...++++.+.
T Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 287 SRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999998763
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=7.2e-20 Score=141.97 Aligned_cols=235 Identities=9% Similarity=-0.056 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
+...+..++..+...|++++|+.+|+.+.. ..+.+..+|..+..++...|++++|+..++++.+.. +
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 86 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ-----------AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P 86 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--c
Confidence 456678999999999999999999999843 334588899999999999999999999999999853 5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL--------------LN-AMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~ 149 (262)
.+..++..+..++...|++++|++.++++.+.. +.+...+..+ .. .+...|++++|...++++.
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 678889999999999999999999999998764 3444444444 33 4778899999999999999
Q ss_pred hcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH
Q 037499 150 KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV 229 (262)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 229 (262)
...+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~ 242 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRV 242 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 9888889999999999999999999999999999874 335778999999999999999999999999875 2446788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 230 FASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+..+..+|...|++++|.+.+++..+.
T Consensus 243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 243 MYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 14
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=7.9e-23 Score=173.33 Aligned_cols=152 Identities=11% Similarity=0.028 Sum_probs=123.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMS---SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSY 159 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 159 (262)
..-..+|+++|++|++.|++++|.++|++|. ..|+.||+.|||+||++|++.|++++|.++|++|.+.|. ||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999998875 458899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC------HHHHHH
Q 037499 160 NILMHGCVVSRRL-EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD------AQVFAS 232 (262)
Q Consensus 160 ~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 232 (262)
|++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++.. ++.|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHH
Confidence 9999999999985 78999999999999999999999998765554 34444444432 34443 334445
Q ss_pred HHHHHHhcC
Q 037499 233 LIKGLCAVG 241 (262)
Q Consensus 233 l~~~~~~~g 241 (262)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555666544
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=166.85 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=117.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHH
Q 037499 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK---YVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196 (262)
Q Consensus 121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 196 (262)
...||+++|++|++.|+.++|.++|..|.+ .+. ||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 345 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 197 LIYGLCLELR-VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 197 li~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+|.++++.|+ .++|.++|++|.+. |+.||..+|+.++..+.+. .+++.++++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999998 57899999999988 9999999999998766554 444444444 4455554
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=2.1e-19 Score=131.74 Aligned_cols=200 Identities=12% Similarity=-0.012 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (262)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4577889999999999999999999999999853 6678899999999999999999999999999876 667789999
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHH
Q 037499 128 LLNAMLTC-----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGT 196 (262)
Q Consensus 128 ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 196 (262)
+..++... |++++|+..|++..+..+.+...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 99999999 999999999999999888889999999999999999999999999999987 68889999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 197 LIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 197 li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
+..++...|++++|+..|++..+. .+.+...+..+..++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999875 23467788899999999999999999988753
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=6.9e-19 Score=138.01 Aligned_cols=241 Identities=9% Similarity=0.006 Sum_probs=201.4
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC---CCHHHHHHH------------HHHHHhcCC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR---YNLLHYDLI------------ITKLGRAKM 66 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~ 66 (262)
.|.++..+..++..+...|++++|...|+.+... .+ .+...+..+ ...+...|+
T Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3556667889999999999999999999998442 23 355566555 588999999
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 146 (262)
+++|+..++++.+.. +.+..++..+..++...|++++|++.++++.+.. +.+..++..+...+...|++++|...|+
T Consensus 136 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 136 YTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999853 6678889999999999999999999999999875 6778899999999999999999999999
Q ss_pred HHHhcCCCChhHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCch----HHHHHHHHHHHhhCCHHHH
Q 037499 147 IMEKYVSPDACSYNI------------LMHGCVVSRRLEDAWKVFDEMLKRRLQPTL----VTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a 210 (262)
...+..+.+...+.. +...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|
T Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 999887766665543 367789999999999999999986432 22 2355577889999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
...+++..+. .+.+..++..+..+|...|++++|.+.+++..+ +.|+
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~ 338 (359)
T 3ieg_A 292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEN 338 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 9999999875 244788999999999999999999999999987 3454
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.2e-20 Score=148.90 Aligned_cols=235 Identities=12% Similarity=0.017 Sum_probs=193.6
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
.|.++.++..++..+.+.|++++|+..|+.+.. ..+.+..+|..+..++...|++++|+..++++.+..
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLE-----------LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 466777889999999999999999999999843 334578899999999999999999999999998742
Q ss_pred CCCcc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 82 RVVPE-----------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 82 ~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
|+ ..++..+...+...|++++|+++|+++.+.. +. +..++..+...|...|++++|++.|++.
T Consensus 164 ---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 164 ---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp ---HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33 2233445888999999999999999999875 34 6889999999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC----
Q 037499 149 EKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK---- 224 (262)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---- 224 (262)
.+..+.+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+...-.
T Consensus 240 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 318 (365)
T 4eqf_A 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318 (365)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc
Confidence 99888889999999999999999999999999999863 3357889999999999999999999999987652110
Q ss_pred ------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 225 ------PDAQVFASLIKGLCAVGELSLALGFKEE 252 (262)
Q Consensus 225 ------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 252 (262)
.+..+|..+..++...|+.+.+..+..+
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp --------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 1357899999999999999988887664
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.6e-18 Score=132.70 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=186.7
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CccHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-VPEEI 88 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 88 (262)
..+.+++...|+++.|+..++.. .+|+..++..+...+...++.++|++.++++... +. +.+..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~--------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~-~~~P~~~~ 102 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS--------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR-SVDVTNTT 102 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT--------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS-CCCCSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc--------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-ccCCCCHH
Confidence 45788999999999999988663 2357889999999999999999999999999875 33 44677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhH--HHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACS--YNILMHGC 166 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~ 166 (262)
.+..+..++.+.|++++|++.+++ +.+..++..++.+|.+.|++++|.+.|+++....+.+... ...++..+
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence 788888999999999999999987 4677899999999999999999999999998876533322 12334555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH-
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL- 245 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~- 245 (262)
...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+. .+-+..++..++..+...|+.++
T Consensus 177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHH
Confidence 5669999999999999987 3557889999999999999999999999999875 23477789999999999999876
Q ss_pred HHHHHHHHHHcCCCCC
Q 037499 246 ALGFKEEMVRNKIEMD 261 (262)
Q Consensus 246 a~~~~~~m~~~g~~pd 261 (262)
+.++++++.+ +.|+
T Consensus 254 a~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 254 TNRYLSQLKD--AHRS 267 (291)
T ss_dssp HHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHH--hCCC
Confidence 5788998877 4444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=5.4e-20 Score=145.21 Aligned_cols=237 Identities=11% Similarity=0.008 Sum_probs=198.1
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
.|.++..+..++..+.+.|++++|+..|+.+.. ..+.+..+|..+...+...|++++|++.++++.+..
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLE-----------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 466677789999999999999999999999843 334578899999999999999999999999998853
Q ss_pred CCCccHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 037499 82 RVVPEEIIFCN---------------VISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLLNAMLTCGKIDRMTDL 144 (262)
Q Consensus 82 ~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~ 144 (262)
+.+...+.. .+..+...|++++|++.|+++.+.. +. +..++..+..+|...|++++|+..
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 163 --PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp --TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222222221 2333448999999999999998875 33 578899999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC
Q 037499 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK 224 (262)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 224 (262)
|+++....+.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+...-.
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999998888889999999999999999999999999998864 3467789999999999999999999999987642111
Q ss_pred ---------CCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 225 ---------PDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 225 ---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
....+|..+..+|...|+.++|..++.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 12688999999999999999999987643
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.8e-18 Score=135.68 Aligned_cols=233 Identities=11% Similarity=-0.017 Sum_probs=198.6
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (262)
..+..++..+...|++++|+..|+.+.. ..+.+..+|..+..++...|++++|+..++++.+.. +.+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 70 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVD-----------GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDF 70 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc
Confidence 3567889999999999999999999843 344578899999999999999999999999999853 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhc
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ---RTVKSFNTL------------LNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
...+..+..++...|++++|.+.|+++.+.. + .+...+..+ ...+...|++++|+++++++...
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999864 3 345555555 57889999999999999999998
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFA 231 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 231 (262)
.+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 226 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA 226 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHH
Confidence 88889999999999999999999999999999874 4467889999999999999999999999998752 22333332
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 232 ------------SLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 232 ------------~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.+...+.+.|++++|...++++.+.
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2366789999999999999998874
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=4.9e-20 Score=142.91 Aligned_cols=236 Identities=9% Similarity=-0.025 Sum_probs=197.4
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
.|.++..+..++..+.+.|++++|.+.|+.+.. ..+.+..+|..+...+...|++++|++.++++.+..
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARM-----------LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 355666788899999999999999999999843 334578899999999999999999999999998753
Q ss_pred CCCccHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499 82 RVVPEEIIFCNV--------------IS-FYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 82 ~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 146 (262)
+.+...+..+ .. .+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++
T Consensus 120 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 196 (327)
T 3cv0_A 120 --PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLR 196 (327)
T ss_dssp --TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2333333333 22 3778899999999999999876 5678899999999999999999999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-
Q 037499 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP- 225 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p- 225 (262)
++....+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. ...
T Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~ 274 (327)
T 3cv0_A 197 RAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGT 274 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cccc
Confidence 9998888889999999999999999999999999998864 3367788999999999999999999999988752 111
Q ss_pred ----------CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 226 ----------DAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 226 ----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
+..+|..+..++.+.|+.++|..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678999999999999999999988754
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=1.6e-19 Score=132.34 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=165.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
|+++..+..++..+.+.|++++|+..|+.... ..+.+...|..+...+.+.|++++|+..+++..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-----------ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 77888899999999999999999999999843 455688999999999999999999999999999863
Q ss_pred CCccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 83 VVPEEIIFCNVISFYGRA-----------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
|.+...+..+..++... |++++|+..|++..+.. |.+...+..+..++...|++++|+..|++..+.
T Consensus 70 -P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 70 -PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp -TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 56788899999999999 99999999999999875 567788999999999999999999999999988
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++...
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8 889999999999999999999999999999874 33677888899999999999999999987753
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.84 E-value=1e-18 Score=132.23 Aligned_cols=238 Identities=9% Similarity=0.004 Sum_probs=196.5
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
++..+...+..+...|++++|+..|+.... ..+.+...|..+..++...|++++|+..+++..+.. -.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 69 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEA-----------KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NA 69 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHH-----------TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cc
Confidence 456778889999999999999999999844 233466689999999999999999999999998742 11
Q ss_pred c--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 85 P--EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 85 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+ ...+|..+..++...|++++|++.|++..+.. +.+..++..+..+|...|++++|+..|++..+..+.+...|..+
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 2 24458899999999999999999999999875 56778999999999999999999999999998877888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCCC------HHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKPD------AQVFASL 233 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p~------~~~~~~l 233 (262)
...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++..+...-.|+ ..+|..+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 834444569999999999999864 2346777778888888888 88899999988775333344 2578889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 037499 234 IKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...|...|++++|.+.+++..+.
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999873
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.3e-18 Score=129.01 Aligned_cols=226 Identities=10% Similarity=0.052 Sum_probs=194.1
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-VVP 85 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 85 (262)
..+..++..+...|++++|+..|+..... . .+..+|..+..++...|++++|+..+++..+... ..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 35678899999999999999999998543 2 6788999999999999999999999999887420 111
Q ss_pred c----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 86 E----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 86 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+ ..++..+..++...|++++|++.|++..+.. |+. ..+...|++++|...++.+....+.+...+..
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 1 5788999999999999999999999999863 442 45667788999999999999887777889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...|..+..+|...|
T Consensus 145 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 145 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 336788999999999999999999999999875 2446788999999999999
Q ss_pred ChhHHHHHHHHHHHc
Q 037499 242 ELSLALGFKEEMVRN 256 (262)
Q Consensus 242 ~~~~a~~~~~~m~~~ 256 (262)
++++|.+.+++..+.
T Consensus 222 ~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 222 EYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998764
No 26
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=1.8e-17 Score=124.02 Aligned_cols=200 Identities=8% Similarity=-0.033 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 6788999999999999999999999998853 5678889999999999999999999999998875 567788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
.|...|++++|.++++++.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988 444567889999999999999999999999998864 335778889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+|...++++.+ ..+.+...+..+...+...|+.++|.++++++.+.
T Consensus 193 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999976 33457778888999999999999999999999874
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.3e-19 Score=145.43 Aligned_cols=234 Identities=13% Similarity=0.035 Sum_probs=204.2
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
+..+..++..+...|++++|...|+.+... . |+...|..+...+...|++++|+..++++.+. .+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~ 302 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----------F-PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSN 302 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----------C-CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----------C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcC
Confidence 446778899999999999999999998543 1 22888999999999999999999999999875 355
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+..++..+..++...|++++|+..|++..+.. +.+..++..+...+...|++++|+.+++.+....+.+..++..+...
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 67789999999999999999999999999875 55778899999999999999999999999998888888999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-Cc----hHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQ-PT----LVTFGTLIYGLCL---ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGL 237 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 237 (262)
+.+.|++++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+. .+.+..++..+..+|
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 99999999999999999875221 11 3388889999999 99999999999999875 244678889999999
Q ss_pred HhcCChhHHHHHHHHHHHc
Q 037499 238 CAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 238 ~~~g~~~~a~~~~~~m~~~ 256 (262)
.+.|++++|.+.+++..+.
T Consensus 460 ~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998874
No 28
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.9e-18 Score=126.72 Aligned_cols=204 Identities=11% Similarity=0.048 Sum_probs=162.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHH
Q 037499 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFN 126 (262)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (262)
.......|..+...+...|++++|+..|+++.+. .+.+...+..+..++...|++++|++.|+++.+.. +.+..++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp -----------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 3456778888999999999999999999999874 35678889999999999999999999999998875 56788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (262)
.+...+...|++++|.+.++++.+..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999888888999999999999999999999999998864 3367788889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+++|...++++.+. .+.+..++..+..+|...|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999875 2446788999999999999999999999999874
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=4.6e-18 Score=124.72 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+...|..+...+...|++++|++.++++.+.. +.+...+..+..++...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 56677777777788888888888887777642 4456677777777778888888888887777664 45666777777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499 130 NAMLTC-GKIDRMTDLFQIMEK--YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 130 ~~~~~~-g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (262)
..+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 777787 888888888877776 222345677777777788888888888887777653 2246667777777778888
Q ss_pred HHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 207 VDEALKLKEDMMRVYNVK-PDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+++|...++++.+. .+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888777664 12 4556666666777777888888777777765
No 30
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=3.7e-17 Score=119.84 Aligned_cols=168 Identities=11% Similarity=-0.078 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCC-ChhhHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRA-RLLEHALQVFDEMSSFNVQR-TVKSFNT 127 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 127 (262)
+...|..+...+...|++++|++.++++.+.. +.+..++..+...+... |++++|.+.++++.+.+..| +...+..
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 45555666666666666666666666665532 33455556666666666 66666666666665521112 2345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
+..++...|++++|+..++++.+..+.+...+..+...+.+.|++++|...++++.+.....+...+..+...+...|+.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 66666666666666666666655555555566666666666666666666666665542213444555555555566666
Q ss_pred HHHHHHHHHHHH
Q 037499 208 DEALKLKEDMMR 219 (262)
Q Consensus 208 ~~a~~~~~~~~~ 219 (262)
+.|..+++.+.+
T Consensus 199 ~~a~~~~~~~~~ 210 (225)
T 2vq2_A 199 QAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=2.1e-18 Score=128.19 Aligned_cols=202 Identities=9% Similarity=0.020 Sum_probs=162.7
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
..+..+..++..+...|++++|...|+.+.. ..+.+...+..+...+...|++++|+..++++.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 87 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-----------ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-- 87 (243)
T ss_dssp ---------------------CCTTHHHHHT-----------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-----------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 3456678888999999999999999999844 344578899999999999999999999999998853
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..+.
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 5578889999999999999999999999998876 667888999999999999999999999999988888889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..+.+.|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999998874 345778899999999999999999999999875
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.82 E-value=3.7e-18 Score=127.72 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
+..+..++..+...|++++|.+.|+.+.. ..+.+..+|..+...+...|++++|++.++++.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE-----------IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cC
Confidence 34567888999999999999999999843 334478899999999999999999999999998853 55
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
+..++..+...+...|++++|+++|+++.+.+..| +...+..+..++...|++++|...|++.....+.+...+..+..
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 183 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD 183 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 78889999999999999999999999998732234 56788889999999999999999999999888888899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998863 346778888889999999999999999999875
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.81 E-value=1.1e-18 Score=137.94 Aligned_cols=233 Identities=11% Similarity=-0.003 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM-FDEVQQILHQLKHDTRV 83 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~ 83 (262)
+...+..+..++.+.|++++|++.|+.+.. ..+.+..+|+.+..++...|+ +++|+..|+++.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-----------l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-- 162 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE-----------LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-- 162 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----------hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--
Confidence 344578889999999999999999999843 445588999999999999997 999999999999863
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+-+...|..+..++...|++++|+..|+++.+.. +-+..+|..+..++.+.|++++|+..|+++.+..+.+...|+.+.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678899999999999999999999999999886 678899999999999999999999999999999999999999999
Q ss_pred HHHHh-cCChhHH-----HHHHHHHHHCCCCCchHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 164 HGCVV-SRRLEDA-----WKVFDEMLKRRLQPTLVTFGTLIYGLCLEL--RVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 164 ~~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
.++.+ .|..++| +..+++...... -+...|..+...+...| ++++|++.+.++ + ..+.+...+..+..
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~ 317 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVD 317 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHH
Confidence 99999 6665887 588888888642 25678888888888888 689999999887 3 44557788999999
Q ss_pred HHHhcC---------ChhHHHHHHHHH-HH
Q 037499 236 GLCAVG---------ELSLALGFKEEM-VR 255 (262)
Q Consensus 236 ~~~~~g---------~~~~a~~~~~~m-~~ 255 (262)
+|.+.| ..++|+++++++ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 998874 258999999998 54
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2e-17 Score=126.52 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=179.0
Q ss_pred HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
+......|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. .-+|+..++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~ 68 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAV 68 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHH
Confidence 45566799999999999876332 222 34666788999999999999986654 136788899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
..+...+...++.++|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..+.+.
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHC
Confidence 999999999999999999999998776434 566777788999999999999999988 57888999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHH---HHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTF---GTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 246 (262)
|++++|...|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|
T Consensus 144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999874 443222 22334444569999999999999885 456888999999999999999999
Q ss_pred HHHHHHHHHc
Q 037499 247 LGFKEEMVRN 256 (262)
Q Consensus 247 ~~~~~~m~~~ 256 (262)
.+.+++..+.
T Consensus 220 ~~~l~~al~~ 229 (291)
T 3mkr_A 220 EGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=9.7e-17 Score=121.61 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=197.2
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQL 77 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 77 (262)
+|.++.++..++..+...|++++|+..|+.... +.+...+..+...+.. .+++++|+..|++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 456677888999999999999999999998833 2366788999999999 99999999999999
Q ss_pred HhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 037499 78 KHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIME 149 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 149 (262)
.+. + +...+..+...|.. .+++++|++.|++..+.+ +..++..+...|.. .+++++|+..|++..
T Consensus 69 ~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 69 CDL-N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 885 3 67788899999999 999999999999999865 67789999999999 999999999999998
Q ss_pred hcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhc
Q 037499 150 KYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRVY 221 (262)
Q Consensus 150 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 221 (262)
+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.
T Consensus 142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 215 (273)
T 1ouv_A 142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL- 215 (273)
T ss_dssp HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-
T ss_pred hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-
Confidence 865 66778888888988 999999999999999875 56778888888999 99999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 037499 222 NVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNK 257 (262)
Q Consensus 222 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 257 (262)
+ +...+..+...|.. .++.++|.+.+++..+.|
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 2 36778888889998 999999999999998865
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.2e-18 Score=139.50 Aligned_cols=160 Identities=14% Similarity=0.020 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+...+...|++++|.+.|+++.+.. |+..++..+..++...|++++|...++++....+.+..++..+...+...|
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 334444444555555555555544433 114445555555555555555555555555544445555666666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (262)
++++|...++++.+... .+...+..+...+...|++++|...++++.+. .+.+..++..+...|...|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666665432 24455556666666666666666666666553 1223455666666666666666666666
Q ss_pred HHHHH
Q 037499 251 EEMVR 255 (262)
Q Consensus 251 ~~m~~ 255 (262)
+++.+
T Consensus 396 ~~a~~ 400 (514)
T 2gw1_A 396 DLAIE 400 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 37
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=1.7e-17 Score=137.27 Aligned_cols=239 Identities=11% Similarity=-0.004 Sum_probs=177.6
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++..+..++.++.+.|++++|++.|+.+.. ..+.+..+|..+..++...|++++|+..|+.+....
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 123 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALE-----------IKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG 123 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC---
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------cCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 456667778888888888888888888888733 334467788888888888888888877664331100
Q ss_pred --------------------------------------------------------------------------------
Q 037499 82 -------------------------------------------------------------------------------- 81 (262)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (262)
T Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------CCCcc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499 82 --------------------------RVVPE--------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127 (262)
Q Consensus 82 --------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (262)
...|+ ..++..+...+...|++++|.+.|++..+.. |+..++..
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 281 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIF 281 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHH
Confidence 00111 1235555566777788888888888887763 45777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
+...+...|++++|+..|+++....+.+..++..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 282 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 360 (537)
T 3fp2_A 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKF 360 (537)
T ss_dssp HHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888888887777788888888888888888888888888887642 2456777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 208 DEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
++|...++++.+. .+.+...+..+..+|...|++++|.+.++++.+.
T Consensus 361 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 361 TESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8888888888764 2335667788888888888888888888887653
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.80 E-value=4.3e-17 Score=134.85 Aligned_cols=232 Identities=12% Similarity=0.014 Sum_probs=199.1
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
++..++..+...|++++|+..|+.+... .|+...|..+...+...|++++|+..++++.+.. +.+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 310 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYP 310 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc------------CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCH
Confidence 3567778888999999999999998442 3457889999999999999999999999998853 5668
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
.++..+..++...|++++|++.|++..+.. +.+..++..+..++...|++++|...++++.+..+.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 889999999999999999999999999875 5567889999999999999999999999999988888889999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCC-----CchHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQ-----PTLVTFGTLIYGLCLE----------LRVDEALKLKEDMMRVYNVKPDAQVFAS 232 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 232 (262)
..|++++|...|+++.+.... .....+......+.+. |++++|...|+++.+. .+.+...+..
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 467 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIG 467 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 999999999999998875211 1122244455677777 9999999999999875 2446788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc
Q 037499 233 LIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 233 l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+..+|.+.|++++|.+.|++..+.
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 39
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4e-19 Score=140.11 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
+++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...+.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--- 90 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence 34569999999999999999999999764 27779999999999999999999988877763
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA 155 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 155 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence 4557889999999999999999988874 467789999999999999999999999987 4799999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 243 (262)
.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999988 2789999999999999999999655443 223444456788999999999
Q ss_pred hHHHHHHHHHHH
Q 037499 244 SLALGFKEEMVR 255 (262)
Q Consensus 244 ~~a~~~~~~m~~ 255 (262)
++|..+++....
T Consensus 224 eEai~lLe~aL~ 235 (449)
T 1b89_A 224 EELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999988753
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=2.8e-17 Score=124.37 Aligned_cols=230 Identities=10% Similarity=-0.032 Sum_probs=183.3
Q ss_pred HHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 11 RLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 11 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.+...+...|++++|+..|+.+..... ...+.+..+|..+...+...|++++|+..|+++.+.. +.+..++
T Consensus 10 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~ 80 (275)
T 1xnf_A 10 VLAVPLQPTLQQEVILARMEQILASRA-------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVF 80 (275)
T ss_dssp GSCCCCCCCHHHHHHHHHHHHHHTSSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHH
T ss_pred ceeeccCccchHHHHHHHHHHHHhccc-------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHH
Confidence 333445667999999999998855310 0112367889999999999999999999999999853 5678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
..+..++...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...|+++....+.+.. ....+..+...|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 158 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RSLWLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhc
Confidence 999999999999999999999999875 567889999999999999999999999999887664443 333444556779
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCChhH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-----AQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 245 (262)
++++|...+++..... +++...+. ++..+...++.++|...+++..+. .|+ ..++..+..+|...|++++
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHH
Confidence 9999999998887763 33444444 667778888899999998887532 332 5778889999999999999
Q ss_pred HHHHHHHHHHc
Q 037499 246 ALGFKEEMVRN 256 (262)
Q Consensus 246 a~~~~~~m~~~ 256 (262)
|...+++..+.
T Consensus 234 A~~~~~~al~~ 244 (275)
T 1xnf_A 234 ATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.2e-15 Score=117.75 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=181.0
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhcCCCCccHH
Q 037499 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-------AKMF-------DEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~ 88 (262)
++|..+|++... ..+.++..|..++..+.. .|++ ++|..+|++..+.. .+.+..
T Consensus 33 ~~a~~~~~~al~-----------~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLL-----------VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNML 100 (308)
T ss_dssp HHHHHHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHH
T ss_pred HHHHHHHHHHHH-----------HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHH
Confidence 788899998833 455688899999888764 5886 89999999999721 234567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-VK-SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
.|..++..+.+.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+..+.+...|...+...
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999999999999999999985 443 44 8999999999999999999999999988776666776554443
Q ss_pred H-hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCh
Q 037499 167 V-VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP--DAQVFASLIKGLCAVGEL 243 (262)
Q Consensus 167 ~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 243 (262)
. ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++......+.| ....|..++..+.+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 3 3799999999999998863 33678889999999999999999999999987422455 467889999999999999
Q ss_pred hHHHHHHHHHHHc
Q 037499 244 SLALGFKEEMVRN 256 (262)
Q Consensus 244 ~~a~~~~~~m~~~ 256 (262)
+.|..+++++.+.
T Consensus 258 ~~a~~~~~~a~~~ 270 (308)
T 2ond_A 258 ASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998874
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=2.3e-17 Score=124.81 Aligned_cols=225 Identities=9% Similarity=-0.130 Sum_probs=178.6
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
++..+..++..+...|++++|+..|+.+.. ..+.+..+|..+...+...|++++|+..|+++.+.. +
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~ 108 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALA-----------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P 108 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--c
Confidence 445678899999999999999999999843 334578899999999999999999999999999853 5
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
.+..++..+..++.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++......+++...+. ++.
T Consensus 109 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 185 (275)
T 1xnf_A 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE 185 (275)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH
T ss_pred cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHH
Confidence 567889999999999999999999999999864 44444555556667789999999999888877776666655 777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
.+...++.++|...++......... +...+..+...|.+.|++++|...|++..+. .|+. +.....++...|
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~--~~~~~~~~~~l~ 260 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN--FVEHRYALLELS 260 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT--CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh--HHHHHHHHHHHH
Confidence 7788888999999999887653211 2578888999999999999999999999853 4532 223355677888
Q ss_pred ChhHHHHHH
Q 037499 242 ELSLALGFK 250 (262)
Q Consensus 242 ~~~~a~~~~ 250 (262)
++++|++-+
T Consensus 261 ~~~~a~~~~ 269 (275)
T 1xnf_A 261 LLGQDQDDL 269 (275)
T ss_dssp HHHHC----
T ss_pred HHHhhHHHH
Confidence 888888765
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=2.1e-15 Score=107.32 Aligned_cols=166 Identities=12% Similarity=0.055 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
++.+|..+...+.+.|++++|++.|++..+.. |-+..++..+..+|.+.|++++|++.+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 66778888888888888888888888887753 5567778888888888888888888888887765 55666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
..+...++++.|...+.+.....+.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888887777778888888888888888888888888887764 2356677778888888888888
Q ss_pred HHHHHHHHHH
Q 037499 210 ALKLKEDMMR 219 (262)
Q Consensus 210 a~~~~~~~~~ 219 (262)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.74 E-value=1.5e-15 Score=108.10 Aligned_cols=167 Identities=10% Similarity=0.067 Sum_probs=151.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+..+|..+...|.+.|++++|++.|++..+.. |-+..++..+..+|.+.|++++|+..+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999876 66788999999999999999999999999999888889999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhH
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSL 245 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 245 (262)
+...++++.+...+.+..... +.+...+..+...+.+.|++++|++.|++..+. .+.+..+|..+..+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999998864 336778888999999999999999999999875 23467889999999999999999
Q ss_pred HHHHHHHHHHc
Q 037499 246 ALGFKEEMVRN 256 (262)
Q Consensus 246 a~~~~~~m~~~ 256 (262)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999998873
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=1.4e-15 Score=114.80 Aligned_cols=220 Identities=10% Similarity=-0.003 Sum_probs=179.0
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
+|.++..+..++..+...|++++|++.|+.....+. .......+|..+...+...|++++|+..|++..+..
T Consensus 33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN--------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC--------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 567788999999999999999999999999855311 112234568999999999999999999999999863
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+.+..++..+..+|...|++++|++.|++..+.. +.+..++..+...+...+++++|.+.|++..+..+.+...+..
T Consensus 105 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 181 (272)
T 3u4t_A 105 --TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181 (272)
T ss_dssp --TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred --cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 5567789999999999999999999999998874 5667788888734445569999999999999988888889999
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHHCC-CCCc------hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHH
Q 037499 162 LMHGCVVSRR---LEDAWKVFDEMLKRR-LQPT------LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVF 230 (262)
Q Consensus 162 l~~~~~~~g~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 230 (262)
+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|.+.|++..+. .| +...+
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~ 258 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL---DPTNKKAI 258 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CccHHHHH
Confidence 9999999998 888999999888652 2233 257778888999999999999999999875 44 44454
Q ss_pred HHHHH
Q 037499 231 ASLIK 235 (262)
Q Consensus 231 ~~l~~ 235 (262)
..+..
T Consensus 259 ~~l~~ 263 (272)
T 3u4t_A 259 DGLKM 263 (272)
T ss_dssp HHHC-
T ss_pred HHhhh
Confidence 44433
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.8e-18 Score=129.00 Aligned_cols=245 Identities=12% Similarity=0.032 Sum_probs=172.0
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD----- 80 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 80 (262)
..++..++..+...|++++|+..|+.+...... ......+....++..+...+...|++++|+..+++..+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK---TSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999988441000 000022345678899999999999999999999998764
Q ss_pred -CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 037499 81 -TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF------NV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY- 151 (262)
Q Consensus 81 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 151 (262)
...+....++..+...|...|++++|.+.|++..+. +. +....++..+...+...|++++|++++++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 112344678889999999999999999999988764 22 223467888999999999999999999988765
Q ss_pred -------CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-------CCCch-------HHHHHHHHHHHhhCCHHHH
Q 037499 152 -------VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-------LQPTL-------VTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 152 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~a 210 (262)
.+....++..+...|...|++++|...++++.+.. ..+.. ..+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22445678899999999999999999999988631 11111 1122222333444555555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 211 LKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
...+...... .+.+..++..+..+|.+.|++++|.+++++..+
T Consensus 264 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666532 223556788999999999999999999999876
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=5.1e-16 Score=126.75 Aligned_cols=215 Identities=12% Similarity=-0.029 Sum_probs=185.4
Q ss_pred ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 037499 21 DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF-DEVQQILHQLKHDTRVVPEEIIFCNVISFYGR 99 (262)
Q Consensus 21 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (262)
.+++++..++.... ..+.+...|..+...+...|++ ++|++.|++..+.. +.+...|..+..+|.+
T Consensus 83 ~~~~al~~l~~~~~-----------~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 83 EMEKTLQQMEEVLG-----------SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHT-----------TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Confidence 36667777776522 3345888999999999999999 99999999999863 5568899999999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-
Q 037499 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC---------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS- 169 (262)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 169 (262)
.|++++|++.|++..+.. |+..++..+..+|... |++++|+..|++..+..+.+...|..+..+|...
T Consensus 150 ~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999874 6678899999999999 9999999999999998888899999999999999
Q ss_pred -------CChhHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 037499 170 -------RRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV 240 (262)
Q Consensus 170 -------g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 240 (262)
|++++|...|++..+.... .+...|..+..+|...|++++|...|++..+. .+-+...+..+..++...
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 9999999999999986321 37788999999999999999999999999875 233566788888999999
Q ss_pred CChhHHHHHHHH
Q 037499 241 GELSLALGFKEE 252 (262)
Q Consensus 241 g~~~~a~~~~~~ 252 (262)
|++++|++.+.+
T Consensus 306 g~~~eAi~~~~~ 317 (474)
T 4abn_A 306 SRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcc
Confidence 999999875544
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7e-15 Score=109.91 Aligned_cols=193 Identities=13% Similarity=0.031 Sum_probs=165.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC----hh
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV--QRT----VK 123 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~ 123 (262)
....|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|++.+++..+..- .++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 45678899999999999999999999999863 7788899999999999999999999999886531 111 57
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
++..+..++...|++++|+..|++.....+ + ...+.+.|++++|...++.+.... +.+...+..+...+..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHR-T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCc-h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 889999999999999999999999987543 3 245667889999999999999863 2356688888999999
Q ss_pred hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 204 ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.|++++|...++++.+. .+.+..+|..+..+|...|++++|...+++..+.
T Consensus 152 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999875 2446788999999999999999999999999874
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=9.3e-15 Score=115.62 Aligned_cols=198 Identities=8% Similarity=0.037 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-LEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
+...|..+...+.+.|++++|++.++++.+.. +-+..+|..+..++...|+ +++|++.|++..+.. +-+..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 45788899999999999999999999999863 5668889999999999997 999999999999886 6678999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh-hCCH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL-ELRV 207 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 207 (262)
..++...|++++|+..|+++....+.+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999999999997543 67888889888888 6665
Q ss_pred HHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHH
Q 037499 208 DEA-----LKLKEDMMRVYNVKPDAQVFASLIKGLCAVG--ELSLALGFKEEM 253 (262)
Q Consensus 208 ~~a-----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~m 253 (262)
++| +..+++.... .+-+...|..+..++...| ++++|.+.+.++
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 777 5888888864 2336778888888898888 689999998887
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=2.1e-14 Score=101.78 Aligned_cols=161 Identities=12% Similarity=0.013 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..++..+...|++++|...|+.+.. ..+.+..++..+...+...|++++|...++++.+.. +.+..+
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 78 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYD-----------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKV 78 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCC-----------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH-----------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH
Confidence 3444555555555555555555522 222344555555555555555555555555555431 333444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...+...
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 5555555555555555555555554443 334444455555555555555555555555444444444455555555555
Q ss_pred CChhHHHHHHHHHHH
Q 037499 170 RRLEDAWKVFDEMLK 184 (262)
Q Consensus 170 g~~~~a~~~~~~m~~ 184 (262)
|++++|...+++..+
T Consensus 158 ~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 158 GRHEEALPHFKKANE 172 (186)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.1e-14 Score=112.43 Aligned_cols=205 Identities=12% Similarity=0.076 Sum_probs=169.5
Q ss_pred CCCCCCCHHHHHHHHh-------hcCCh-------HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCh
Q 037499 2 NKAKPTSPFRLASLLR-------LQKDP-------KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMF 67 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (262)
+|.++..|..++..+. +.|++ ++|..+|++.... -.+.+...|..++..+.+.|++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------~~p~~~~~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKY 115 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----------TTTTCHHHHHHHHHHHHHTTCH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHhcCCH
Confidence 3566667888887776 35886 9999999998442 1234677999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCcc-HH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-hcCCHHHHHHH
Q 037499 68 DEVQQILHQLKHDTRVVPE-EI-IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML-TCGKIDRMTDL 144 (262)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~ 144 (262)
++|.++|+++.+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+.++|..+
T Consensus 116 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 116 EKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999974 343 43 79999999999999999999999999875 455566655444432 37999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 145 FQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
|+...+..+.+...|..++..+.+.|++++|..+|++..... ..| +...|..++....+.|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998888889999999999999999999999999999963 344 4568888899999999999999999999876
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=2.5e-13 Score=102.70 Aligned_cols=192 Identities=11% Similarity=-0.012 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
++.++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6788899999999999999999999999873 345678889999999 999999999999999875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHH
Q 037499 126 NTLLNAMLT----CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTL 197 (262)
Q Consensus 126 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 197 (262)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 899999999 999999999999998764 78889999999999 999999999999999976 56677778
Q ss_pred HHHHHh----hCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 037499 198 IYGLCL----ELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNK 257 (262)
Q Consensus 198 i~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 257 (262)
...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.+++..+.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 888888 89999999999999874 356788888999999 999999999999988764
No 53
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=3.7e-17 Score=129.01 Aligned_cols=188 Identities=11% Similarity=0.107 Sum_probs=67.1
Q ss_pred HHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHH
Q 037499 15 LLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVI 94 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 94 (262)
.+.+.|++++|.+.++++ . ++.+|..++.++.+.|++++|++.|.+. +|..+|..++
T Consensus 12 ll~~~~~ld~A~~fae~~-~---------------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~ 68 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-N---------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-C---------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHH
Confidence 345778899999999998 1 2359999999999999999999999642 5677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhH
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 174 (262)
.++...|++++|+++++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT------CC----------------CTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999988877764 4567889999999999999999998884 2677799999999999999999
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 037499 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
|..+|..+ ..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|...
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 99999976 48999999999999999999999988 2789999999999999999999643
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=6.2e-16 Score=126.25 Aligned_cols=199 Identities=10% Similarity=-0.049 Sum_probs=174.5
Q ss_pred CCCCCCHHHHHHHHhhcCCh-HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 3 KAKPTSPFRLASLLRLQKDP-KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
|.+...+..++..+...|++ ++|++.|+.... ..+.+...|..+..+|.+.|++++|++.|++..+.
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~- 166 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-----------LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH- 166 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 34556678899999999999 999999999843 33457889999999999999999999999999974
Q ss_pred CCCccHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc--------CCHHHHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRA---------RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------GKIDRMTDL 144 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------g~~~~a~~~ 144 (262)
.|+...+..+..++... |++++|++.|++..+.. +.+...|..+..+|... |++++|+..
T Consensus 167 --~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~ 243 (474)
T 4abn_A 167 --CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243 (474)
T ss_dssp --CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 47788999999999999 99999999999999876 66788999999999998 999999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 145 FQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 145 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
|++.....+ .+...|..+..+|...|++++|...|++..+... .+...+..+..++...|++++|++.+.++
T Consensus 244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998777 7899999999999999999999999999998742 35667888888999999999998765443
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.67 E-value=3.8e-14 Score=100.41 Aligned_cols=165 Identities=13% Similarity=0.017 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|..+...+...|++++|+..++++.+. .+.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 345555666666666666666666666543 23455566666666666666666666666666553 445556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 210 (262)
.+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666555555666666666666666666666666665542 22345555566666666666666
Q ss_pred HHHHHHHHH
Q 037499 211 LKLKEDMMR 219 (262)
Q Consensus 211 ~~~~~~~~~ 219 (262)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665544
No 56
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=1.9e-14 Score=114.25 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=179.0
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Cc
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV-----VP 85 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 85 (262)
.+..+...|++++|+..|+....... ..+..+ ...+|..+...+...|+++.|+..+++..+...- +.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLI------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGG------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHh------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 66778899999999999998755310 001111 4578999999999999999999999988763211 12
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CC
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-----YV-SP 154 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~-~~ 154 (262)
...++..+..+|...|++++|++.|++..+. +..+ ...++..+..+|...|++++|++.+++... .. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2457888999999999999999999988753 1111 124788899999999999999999998877 34 34
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCCCH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKPDA 227 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p~~ 227 (262)
...++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.. ..+...
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHH
Confidence 4678899999999999999999999998764 111223345667778888888 777777776652 212234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 228 QVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
..+..+...|...|++++|.+.+++..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778899999999999999999998653
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=5.3e-15 Score=118.37 Aligned_cols=236 Identities=12% Similarity=0.016 Sum_probs=177.8
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNL----LHYDLIITKLGRAKMFDEVQQILHQLKHDT--- 81 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 81 (262)
+..++..+...|++++|+..|+.+... .+.+. .+|..+...+...|++++|+..+++..+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA-----------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-----------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 345777889999999999999998543 12233 578899999999999999999999886531
Q ss_pred C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C-CCCChhhHHHHHHHHHhcCC-----------------H
Q 037499 82 R-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----N-VQRTVKSFNTLLNAMLTCGK-----------------I 138 (262)
Q Consensus 82 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~-----------------~ 138 (262)
+ .+....++..+...|...|++++|.+.|++..+. + .+....++..+...|...|+ +
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 1 1334567888999999999999999999987654 1 12234578888889999999 9
Q ss_pred HHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-Cc----hHHHHHHHHHHHhhCCH
Q 037499 139 DRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-PT----LVTFGTLIYGLCLELRV 207 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~ 207 (262)
++|++.+++...... ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 999999887654321 23457788889999999999999999888764111 11 23677788889999999
Q ss_pred HHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 208 DEALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++|...+++..+...-.. ...++..+...|...|++++|.+.+++..+
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988765421111 145677888888999999999998888764
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=2.5e-15 Score=120.24 Aligned_cols=244 Identities=15% Similarity=0.079 Sum_probs=187.1
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---C-C
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---R-V 83 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~ 83 (262)
.+..++..+...|++++|+..|+....... .....+....++..+...+...|++++|+..+++..+.. + .
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 162 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-----SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR 162 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch
Confidence 577889999999999999999987643200 001123456788999999999999999999999887631 1 1
Q ss_pred CccHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 037499 84 VPEEIIFCNVISFYGRARL-----------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRM 141 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a 141 (262)
+....++..+...|...|+ +++|++.+++..+. +..+ ...++..+...|...|++++|
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 2335578889999999999 99999999887542 2112 235788889999999999999
Q ss_pred HHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CchHHHHHHHHHHHhhCCHHHH
Q 037499 142 TDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ-----PTLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 142 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~a 210 (262)
+..+++.....+ .+ ..++..+...|...|++++|...+++....... ....++..+...+...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998876543 22 337889999999999999999999988764110 1246778888999999999999
Q ss_pred HHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 211 LKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 211 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...+++..+...-..+ ..++..+..+|...|++++|.+.+++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999988654211112 457888899999999999999999998753
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=3.9e-14 Score=120.43 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.+..+|+.+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|++.|++..+.. +-+..+|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 356677777777777777777777777777642 4456677777777777777777777777777664 4456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
..+|.+.|++++|++.|++..+..+.+...|+.+..+|.+.|++++|+..|++..+... -+...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHH
Confidence 77777777777777777777776666677777777777777777777777777776532 24556677777777777777
Q ss_pred HHHHHHHHHHH
Q 037499 209 EALKLKEDMMR 219 (262)
Q Consensus 209 ~a~~~~~~~~~ 219 (262)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=2.4e-14 Score=121.75 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=151.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
|-+..+++.|..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+..+.+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4457889999999999999999999999999875 566889999999999999999999999999998888899999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGE 242 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 242 (262)
.+|...|++++|.+.|++..+... -+...|..+..+|.+.|++++|++.|++..+. .| +...|..+..+|...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 999999999999999999998642 35778999999999999999999999999875 44 57789999999999999
Q ss_pred hhHHHHHHHHHHH
Q 037499 243 LSLALGFKEEMVR 255 (262)
Q Consensus 243 ~~~a~~~~~~m~~ 255 (262)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=3.9e-15 Score=118.65 Aligned_cols=243 Identities=16% Similarity=0.088 Sum_probs=172.5
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----C
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----V 83 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 83 (262)
.+..++..+...|++++|...|+....... .....+....++..+...+...|++++|+..+++..+... .
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLAR-----TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 466788888889999999988876532100 0001122356788888888889999999998887765310 0
Q ss_pred CccHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 037499 84 VPEEIIFCNVISFYGRARL--------------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKI 138 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~ 138 (262)
.....++..+...|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++
T Consensus 124 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 203 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF 203 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCH
Confidence 1114477788888888888 88888888876542 1111 234677888888899999
Q ss_pred HHHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-chHHHHHHHHHHHhhCCH
Q 037499 139 DRMTDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQP-TLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~ 207 (262)
++|...+++.....+ ++ ..++..+...|...|++++|...+++.... +..+ ...++..+...|...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999988765433 22 337888888999999999999999887753 1111 145677788888899999
Q ss_pred HHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 208 DEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++|...+++..+...-..+ ..++..+..+|...|++++|.+.+++..+
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999887654221222 55777888889999999999999888654
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=112.87 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=173.6
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN----LLHYDLIITKLGRAKMFDEVQQILHQLKHDT-- 81 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 81 (262)
.+...+..+...|++++|+..|+.+... .+.+ ...|..+...+...|++++|++.+++..+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh-----------CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 3556788899999999999999998543 1123 4678899999999999999999998875421
Q ss_pred -C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHHhcCC-----------------
Q 037499 82 -R-VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRT----VKSFNTLLNAMLTCGK----------------- 137 (262)
Q Consensus 82 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~----------------- 137 (262)
+ .+....++..+...+...|++++|.+.+++..+..- .++ ..++..+...+...|+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 1 122356788889999999999999999988764310 111 3477888888889999
Q ss_pred ---HHHHHHHHHHHHhcC----C--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCchHHHHHHHHHHHh
Q 037499 138 ---IDRMTDLFQIMEKYV----S--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-----QPTLVTFGTLIYGLCL 203 (262)
Q Consensus 138 ---~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~li~~~~~ 203 (262)
+++|.+.+++..... . ....++..+...+...|++++|...+++..+... .....++..+...+..
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 899998887765431 1 2345678888888999999999999988765311 1112367777888888
Q ss_pred hCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 204 ELRVDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.|++++|...+++..+...-..+ ..++..+...|...|++++|...+++..+
T Consensus 236 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 89999999888887653211122 45677778888888888888888887654
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=4.6e-15 Score=114.96 Aligned_cols=245 Identities=14% Similarity=0.079 Sum_probs=184.4
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE 86 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (262)
..+..++..+...|++++|.+.++....... .....+....++..+...+...|++++|+..+++..+...-.++
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-----TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence 3467888999999999999999987633200 00011224668888999999999999999999987653111112
Q ss_pred ----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCC
Q 037499 87 ----EIIFCNVISFYGRARL--------------------LEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 87 ----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~ 137 (262)
..++..+...+...|+ +++|.+.+++..+. +..+ ...++..+...+...|+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4478888999999999 99999999876542 2111 23578888899999999
Q ss_pred HHHHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CC-chHHHHHHHHHHHhhCC
Q 037499 138 IDRMTDLFQIMEKYVS--P----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL----QP-TLVTFGTLIYGLCLELR 206 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~-~~~~~~~li~~~~~~g~ 206 (262)
+++|...+++.....+ + ...++..+...+...|++++|...+++...... .+ ...++..+...+...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 9999999998765432 2 234788899999999999999999998875311 11 14577788889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 207 VDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
+++|...+++..+...-..+ ..++..+...|.+.|++++|.+.+++..+.
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999987654211122 447788899999999999999999998874
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=8.7e-15 Score=116.64 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=182.6
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN--LLHYDLIITKLGRAKMFDEVQQILHQLKHD---TRV 83 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 83 (262)
+...+..+...|++++|+..|+.+.... +..+. ..+|..+...+...|++++|+..+++..+. .+-
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG---------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc
Confidence 4577889999999999999999985431 11111 467889999999999999999999987542 111
Q ss_pred C-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC----CCC-ChhhHHHHHHHHHhcCC--------------------
Q 037499 84 V-PEEIIFCNVISFYGRARLLEHALQVFDEMSSFN----VQR-TVKSFNTLLNAMLTCGK-------------------- 137 (262)
Q Consensus 84 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~-------------------- 137 (262)
. ....++..+...+...|++++|...+++..+.. .++ ...++..+...|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 2 235578889999999999999999999876531 111 13478888999999999
Q ss_pred HHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCc----hHHHHHHHHHHHhhCC
Q 037499 138 IDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPT----LVTFGTLIYGLCLELR 206 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~ 206 (262)
+++|++.+++...... ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999987754321 2345788899999999999999999999876411 111 2378888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 207 VDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+++|...+++..+...-.++ ..++..+...|...|++++|.+.+++..+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999999988654211122 55788889999999999999999998765
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=5.4e-13 Score=98.13 Aligned_cols=194 Identities=11% Similarity=-0.043 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.|+..|......+...|++++|+..|++..+.. -+++...+..+..++...|++++|++.|++..+.. +.+..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 366889999999999999999999999999863 22677888889999999999999999999999875 5567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc---hHHHHHHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDA-------CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT---LVTFGTLI 198 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li 198 (262)
..+|...|++++|+..|++..+..+.+. ..|..+...+...|++++|...|++..+. .|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999998877666 56888899999999999999999999886 444 56777777
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+|...|+. +++++... ...+...|.... ....+.+++|...+++..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 777766554 23333221 112233333332 2233445666666666655
No 66
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=9.3e-14 Score=110.17 Aligned_cols=237 Identities=12% Similarity=-0.021 Sum_probs=178.3
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CC-
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR----VV- 84 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~- 84 (262)
...+..+...|++++|+..|+....... ..........++..+...+...|+++.|+..+++..+... ..
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELP-----FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGG-----GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 3456667889999999999998754311 0011122456888999999999999999999998875311 11
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEK-----YVSP 154 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~ 154 (262)
....+++.+..+|...|++++|++.|++..+. +.++ ...++..+..+|...|++++|++.|++... ..+.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 12557888999999999999999999987653 2111 235788899999999999999999999877 5554
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCchHHHHHHHHHHHhhCC---HHHHHHHHHHHHHhcCCCC-C
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQPTLVTFGTLIYGLCLELR---VDEALKLKEDMMRVYNVKP-D 226 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~p-~ 226 (262)
...++..+...|.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|+..+++. +..| .
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~ 335 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYI 335 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHH
Confidence 47888999999999999999999999988742 12223455666666777788 77777777653 2223 3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 227 AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 227 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
...+..+...|...|++++|...+++..+
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888999999999999999998765
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.60 E-value=3.3e-14 Score=107.59 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=158.1
Q ss_pred hhcCChHHHHHhhcCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCccHHH
Q 037499 17 RLQKDPKLALQLFKNPNPNPNNTEAQPLK-PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD------TRVVPEEII 89 (262)
Q Consensus 17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 89 (262)
...|++++|+..|++....... ... ..+....++..+...+...|++++|+..+++..+. ...+....+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEK----TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHH----HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 3456666666666655331000 000 22346778999999999999999999999988764 112344668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSF------N-VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY--------VSP 154 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~ 154 (262)
+..+..+|...|++++|++.|++..+. . .+....++..+...|...|++++|...+++.... .+.
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 889999999999999999999988764 1 1334577888999999999999999999988765 224
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCch-HHHHHHHHHHHhhCC------HHHHHHHHHHHHHh
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-------RLQPTL-VTFGTLIYGLCLELR------VDEALKLKEDMMRV 220 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~-~~~~~li~~~~~~g~------~~~a~~~~~~~~~~ 220 (262)
...++..+...|...|++++|...+++..+. ...+.. ..+..+...+...+. +..+...++...
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK-- 245 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC--
Confidence 4678889999999999999999999998763 112222 233333333332222 222222222221
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 221 YNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 221 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...| ...++..+..+|...|++++|..++++..+.
T Consensus 246 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 -VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 3557888999999999999999999998753
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=4e-13 Score=98.83 Aligned_cols=155 Identities=12% Similarity=-0.056 Sum_probs=132.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
.++..+......+...|++++|++.|++..+..-+++...+..+..++...|++++|++.|++.....+.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678889999999999999999999999987632778888889999999999999999999999988888899999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCch-------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTL-------VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD---AQVFASLI 234 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 234 (262)
.|...|++++|...+++..+... .+. ..|..+...+...|++++|+..|++..+ ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 99999999999999999998632 234 4577778888999999999999999985 4665 56777888
Q ss_pred HHHHhcCCh
Q 037499 235 KGLCAVGEL 243 (262)
Q Consensus 235 ~~~~~~g~~ 243 (262)
.+|...|+.
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776654
No 69
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=5.8e-13 Score=110.29 Aligned_cols=218 Identities=11% Similarity=0.076 Sum_probs=175.6
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCCccHH
Q 037499 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR-------AKMFD-------EVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 88 (262)
++|..+|++.. ...+.+...|..++..+.+ .|+++ +|..+|++..+. -.+.+..
T Consensus 255 ~~a~~~y~~al-----------~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~ 322 (530)
T 2ooe_A 255 KRVMFAYEQCL-----------LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNML 322 (530)
T ss_dssp HHHHHHHHHHH-----------HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHH
T ss_pred HHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHH
Confidence 36777888773 3445588899999988886 69987 899999999862 1345688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-h-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-V-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG- 165 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~- 165 (262)
.|..++..+.+.|++++|.++|+++.+. +|+ . .+|..++..+.+.|++++|.++|++..+..+.+...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 9999999999999999999999999985 443 3 5899999999999999999999999988766444444433322
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCh
Q 037499 166 CVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGEL 243 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 243 (262)
+...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++........|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999998863 336788999999999999999999999999875333443 55788888888899999
Q ss_pred hHHHHHHHHHHH
Q 037499 244 SLALGFKEEMVR 255 (262)
Q Consensus 244 ~~a~~~~~~m~~ 255 (262)
+.+..++.++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
No 70
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.58 E-value=4.4e-12 Score=103.99 Aligned_cols=223 Identities=9% Similarity=-0.056 Sum_probs=135.8
Q ss_pred CCCCHHHHHHHHhh----cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 037499 5 KPTSPFRLASLLRL----QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQ 76 (262)
Q Consensus 5 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 76 (262)
++.++..+...|.. .+++++|+..|+...+. -+...+..+...|.. .+++++|++.|++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 34445566666666 67777777777776332 256667777777777 7777777777777
Q ss_pred HHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037499 77 LKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIM 148 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 148 (262)
..+. + +...+..|...|.. .+++++|+++|++..+.| +...+..+...|.. .+++++|++.|++.
T Consensus 105 a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 105 AALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7664 2 44556666666666 667777777777776654 34556666666665 56677777777766
Q ss_pred HhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499 149 EKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV 220 (262)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 220 (262)
.+. .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.
T Consensus 178 ~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 178 AEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 554 345566666666665 666666766666666553 34445555555554 55666666666655432
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHc
Q 037499 221 YNVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRN 256 (262)
Q Consensus 221 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~ 256 (262)
.+...+..+...|.. .++.++|.++|++..+.
T Consensus 253 ----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 253 ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 233344444444544 55555555555555443
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=2.6e-13 Score=102.59 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=124.7
Q ss_pred HhcCChhHHHHHHHHHHhcC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CC-CCChhhHHHH
Q 037499 62 GRAKMFDEVQQILHQLKHDT------RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF------NV-QRTVKSFNTL 128 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 128 (262)
...|+++.|+..+++..+.. ..+....++..+..+|...|++++|++.|++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34567777777766665521 12345678899999999999999999999988754 21 2345678999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-chHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYV--------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR------RLQP-TLVT 193 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~ 193 (262)
..+|...|++++|+..|++..... +....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999887652 244678889999999999999999999998875 1122 3567
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+..+...|...|++++|..++++..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999999999998763
No 72
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.57 E-value=8.1e-12 Score=102.42 Aligned_cols=224 Identities=10% Similarity=-0.071 Sum_probs=156.9
Q ss_pred CCCCHHHHHHHHhh----cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 037499 5 KPTSPFRLASLLRL----QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGR----AKMFDEVQQILHQ 76 (262)
Q Consensus 5 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 76 (262)
++..+..|+..|.. .+++++|++.|+..... .+...+..+...|.. .+++++|++.|++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 140 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL 140 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 34456777888887 88888888888887332 266777778888877 7788888888888
Q ss_pred HHhcCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037499 77 LKHDTRVVPEEIIFCNVISFYGR----ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIM 148 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 148 (262)
..+. + +...+..+...|.. .+++++|+++|++..+.| +...+..+...|.. .++.++|++.|++.
T Consensus 141 a~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 141 AAEQ-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 8764 2 45667777777776 678888888888887754 45667777777776 77888888888877
Q ss_pred HhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499 149 EKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV 220 (262)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 220 (262)
.+. .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|+.+|++..+.
T Consensus 214 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 214 ATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 665 345566666666665 677777777777777654 34455555556665 67777777777776543
Q ss_pred cCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcC
Q 037499 221 YNVKPDAQVFASLIKGLCAV-----GELSLALGFKEEMVRNK 257 (262)
Q Consensus 221 ~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g 257 (262)
-+...+..+...|... ++.++|..++++..+.|
T Consensus 289 ----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 289 ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp ----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred ----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 2444555666666665 67777777777666544
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.3e-13 Score=112.33 Aligned_cols=190 Identities=11% Similarity=0.021 Sum_probs=111.9
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc---------
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC--------- 135 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 135 (262)
+++++|.+.+++..... +.+..++..+...|...|++++|++.|++..+.. +.+..++..+..+|...
T Consensus 227 ~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ---CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45566666666666532 4455666667777777777777777777776654 44455555555554321
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH--HHHHHHH-HHH
Q 037499 136 ----------GKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV--TFGTLIY-GLC 202 (262)
Q Consensus 136 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~-~~~ 202 (262)
+..++|...++......+.+..++..+...|...|++++|...|++..+....+... .+..+.. ...
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 234566666666666666666777788888888899999999998888764433221 2222222 234
Q ss_pred hhCCHHHHHHHHHHHHHhc----------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 203 LELRVDEALKLKEDMMRVY----------------------NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~----------------------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
..|+.++|+..|++..+.. ..+.+..+|..+..+|...|++++|++.|++.++.|
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6788888888887765421 012345678888888888999999999998887753
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.56 E-value=1.7e-12 Score=97.59 Aligned_cols=197 Identities=8% Similarity=-0.041 Sum_probs=150.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCC
Q 037499 47 FRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EIIFCNVISFYGRARLLEHALQVFDEMSSFNV--QRT 121 (262)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 121 (262)
.+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..- +..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 34577888899999999999999999999999853 333 67888999999999999999999999988631 122
Q ss_pred hhhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCChhHH-----------------HHHHHHHHhcCChhHHH
Q 037499 122 VKSFNTLLNAMLT--------CGKIDRMTDLFQIMEKYVSPDACSY-----------------NILMHGCVVSRRLEDAW 176 (262)
Q Consensus 122 ~~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~ 176 (262)
..++..+..++.. .|++++|+..|+++....+.+.... ..+...|.+.|++++|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4567778888888 9999999999999998777555555 55688899999999999
Q ss_pred HHHHHHHHCCCCC--chHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCh
Q 037499 177 KVFDEMLKRRLQP--TLVTFGTLIYGLCLE----------LRVDEALKLKEDMMRVYNVKPD-AQVFASLIKGLCAVGEL 243 (262)
Q Consensus 177 ~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 243 (262)
..|+++.+..... ....+..+..+|... |++++|...|+++.+.+.-.|. ......+-..+...+++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999998863221 345677777788766 8999999999999876322221 12344444444444444
Q ss_pred hH
Q 037499 244 SL 245 (262)
Q Consensus 244 ~~ 245 (262)
++
T Consensus 249 ~~ 250 (261)
T 3qky_A 249 EG 250 (261)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.53 E-value=6.2e-13 Score=99.94 Aligned_cols=173 Identities=9% Similarity=-0.037 Sum_probs=140.4
Q ss_pred CCCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 2 NKAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN---LLHYDLIITKLGRAKMFDEVQQILHQLK 78 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 78 (262)
+|.++..+..++..+.+.|++++|+..|+.+... .+.+ ...+..+..++.+.|++++|+..|++..
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3455666788899999999999999999998543 2223 7789999999999999999999999999
Q ss_pred hcCC-CCccHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCCChhhH-----------------HHHHHHH
Q 037499 79 HDTR-VVPEEIIFCNVISFYGR--------ARLLEHALQVFDEMSSFNVQRTVKSF-----------------NTLLNAM 132 (262)
Q Consensus 79 ~~~~-~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~ 132 (262)
+... -+.....+..+..++.. .|++++|+..|+++.+.. +.+.... ..+..+|
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8531 12335678888889988 999999999999998764 3344444 5567889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhc----------CChhHHHHHHHHHHHCC
Q 037499 133 LTCGKIDRMTDLFQIMEKYVSP---DACSYNILMHGCVVS----------RRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 186 (262)
.+.|++++|+..|+++.+..+. ....+..+..+|... |++++|...|+++.+..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 9999999999999999887663 356788888888876 88999999999999863
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.53 E-value=3.5e-12 Score=92.54 Aligned_cols=177 Identities=7% Similarity=0.013 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHH----------------HHHHHHhcCCHHHHHHHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCN----------------VISFYGRARLLEHALQVFDEM 113 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~ 113 (262)
++..+......+.+.|++++|+..|++..+.. +.+...+.. +..+|.+.|++++|+..|++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555667778889999999999999998853 334566777 899999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCch
Q 037499 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRLQPTL 191 (262)
Q Consensus 114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~ 191 (262)
.+.. |.+...+..+..++...|++++|+..|++..+..+.+..+|..+...|...|+ .+.+...++.... ..|..
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 157 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQ 157 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchh
Confidence 9876 66788999999999999999999999999999988889999999988876654 3445555555542 23333
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 037499 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLI 234 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 234 (262)
..+.....++...|++++|+..|++.. ...|+......+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al---~l~P~~~~~~~l~ 197 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVI---LRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT---TTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCHHHHHHHH
Confidence 344445556777899999999999998 4578866554443
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=3.5e-12 Score=105.62 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=165.5
Q ss_pred CCCCCCHHHHHHHHhh-------cCChH-------HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChh
Q 037499 3 KAKPTSPFRLASLLRL-------QKDPK-------LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFD 68 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (262)
|.++..|..++..+.+ .|+++ +|..+|++.... ..+.+...|..++..+.+.|+++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~----------~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT----------TCSSCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH----------hCcccHHHHHHHHHHHHhcCCHH
Confidence 4566677788888776 79987 999999998431 23447889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCHHHHHHHH
Q 037499 69 EVQQILHQLKHDTRVVPE-E-IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-MLTCGKIDRMTDLF 145 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~ 145 (262)
+|..+|+++.+. .|+ . .+|...+..+.+.|++++|.++|++..+.. +.+...|...... +...|+.++|..+|
T Consensus 339 ~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 339 KVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999984 343 3 589999999999999999999999998763 3333444333322 34689999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 146 QIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL-QPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+...+..+.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.+++.++.+.
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999888777899999999999999999999999999998742 232 447888888888899999999999998765
No 78
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.52 E-value=3.8e-12 Score=85.05 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
.|..+...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|.++|+++.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 34555556666666666666666655532 3344555555555666666666666666655543 33444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
...|++++|...++++....+.+..++..+...+.+.|++++|...++++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5666666666666555554444455555555555555555555555555544
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.52 E-value=6.7e-13 Score=112.96 Aligned_cols=182 Identities=10% Similarity=-0.069 Sum_probs=148.9
Q ss_pred hhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 037499 17 RLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISF 96 (262)
Q Consensus 17 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (262)
...|++++|++.|+......- .......+.+...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~---~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGAL---DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcc---cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence 789999999999998741000 00002334577889999999999999999999999999853 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 176 (262)
+...|++++|++.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+..+.+...|..+..++.+.|++++|.
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999876 5677889999999999999999 99999999988888999999999999999999999
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHhhCC
Q 037499 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 206 (262)
..|++..+.+. -+...+..+..++...++
T Consensus 555 ~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 99999887532 235667777777666444
No 80
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-12 Score=106.36 Aligned_cols=173 Identities=5% Similarity=-0.182 Sum_probs=112.3
Q ss_pred CCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCC
Q 037499 6 PTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKP-FRYNLLHYDLIITKLGRA--KMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 6 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~ 82 (262)
..++..++.+|...|++++|...++........ . ... ......++..+..++... +++++|+..|++..+..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~---~-~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~- 168 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK---F-SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK- 168 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---S-CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh---c-ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-
Confidence 345778999999999999999988765321000 0 001 122456677666666654 56899999999998753
Q ss_pred CCccHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 037499 83 VVPEEIIFCNVISF---YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDRMTDLFQIMEKYVSPD 155 (262)
Q Consensus 83 ~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~ 155 (262)
|-++..+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+++++.....+.+
T Consensus 169 -p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 246 (472)
T 4g1t_A 169 -PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred -CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence 3445555554444 344566777788887777654 4455555555544443 356677777777777766677
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 156 ACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
..++..+...|...|++++|...+++..+.
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 777777777777888887777777777664
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.50 E-value=1.3e-11 Score=109.03 Aligned_cols=205 Identities=11% Similarity=0.047 Sum_probs=144.8
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
.++.+|..++.++...|++++|++.|.+. .|...|..++.++.+.|++++|++.+....+..
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-- 1164 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-- 1164 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--
Confidence 34667888888888888888888888665 167778888888888888888888888776642
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
++....+.++.+|++.++++....+ .+ .++...|..+...|...|++++|..+|... ..|..+.
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence 3333344578888888887753333 22 455666777888888888888888888885 3688888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 243 (262)
..+.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCH
Confidence 88888888888888887652 4456666666666666666665544332 23445556677777777777
Q ss_pred hHHHHHHHHHH
Q 037499 244 SLALGFKEEMV 254 (262)
Q Consensus 244 ~~a~~~~~~m~ 254 (262)
++|+.+++..+
T Consensus 1297 eEAI~LlE~aL 1307 (1630)
T 1xi4_A 1297 EELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHHh
Confidence 77777775553
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=8.2e-12 Score=83.35 Aligned_cols=127 Identities=14% Similarity=0.185 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|..+++++....+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4445555555566666666666555443 334445555555555555555555555555554444445555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 218 (262)
|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555555432 1233444444455555555555555555544
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=4.5e-12 Score=96.93 Aligned_cols=198 Identities=9% Similarity=0.021 Sum_probs=146.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-Chhh
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDT---RVVPE-EIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKS 124 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 124 (262)
|...+..|...|++++|+..|.+..+.. +-++. ..+|+.+..+|.+.|++++|+..|++..+. |-.. ...+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444567888999999999998886531 21222 568999999999999999999999988653 2111 1357
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC--C----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch------
Q 037499 125 FNTLLNAMLTC-GKIDRMTDLFQIMEKYVSP--D----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL------ 191 (262)
Q Consensus 125 ~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------ 191 (262)
++.+..+|... |++++|+..|++.....+. + ..++..+...+.+.|++++|...|++..+.......
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88899999996 9999999999988765441 1 457889999999999999999999999986433222
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 037499 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA------QVFASLIKGLC--AVGELSLALGFKEEMV 254 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~m~ 254 (262)
..|..+..++...|++++|...|++..+ +.|+. ..+..++.+|. ..+++++|+..|+++.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1567777888999999999999999864 34432 23445566664 4567888888776553
No 84
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=3.2e-12 Score=98.03 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=129.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---
Q 037499 46 PFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT------RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--- 116 (262)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 116 (262)
..+.+..++..+...+...|++++|+.+++++.+.. ..+....++..+..+|...|++++|.+.+++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344467788889999999999999999999887620 12344667888888999999999999999888754
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 117 ---NV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV--------SPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 117 ---~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
+. +....++..+...|...|++++|...+++..... +.....+..+...+...|++++|..+++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 2235677888888888899999998888876542 13455677788888888888888888888776
Q ss_pred C------CCCC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 185 R------RLQP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 185 ~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
. +..| ...++..+...+...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 1122 2346677777788888888888888887754
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=2.5e-12 Score=90.75 Aligned_cols=164 Identities=12% Similarity=0.016 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 037499 5 KPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVV 84 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (262)
.......++..+.+.|++++|+..|+.... ..+.+...+..+...+.+.|++++|+..++...+..
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----------~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--- 70 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSD-----------ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--- 70 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-----------HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---
Confidence 334455666666666777777766666622 333456666666666666666666666666665432
Q ss_pred ccHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CChhHHHH
Q 037499 85 PEEIIFCNVISF-YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDACSYNI 161 (262)
Q Consensus 85 ~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 161 (262)
|+...+..+... +...+....|++.|++..+.. +.+...+..+..++...|++++|...|+++....+ .+...+..
T Consensus 71 p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 71 QDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 233222221111 111112223455555555443 33455555555555566666666666655555444 12345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
+...+...|+.++|...|++..
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 5555555555555555555443
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.47 E-value=4.9e-13 Score=91.89 Aligned_cols=142 Identities=8% Similarity=-0.093 Sum_probs=71.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 139 (262)
.+...|++++|++.++...... +-+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444455555555555554321 1223334445555555566666666655555543 344555555555556666666
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKV-FDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
+|+..|++..+..+.+..+|..+...|.+.|++++|.+. +++..+... -+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 666666555555555555555555555555555544333 355444321 13344444444444443
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=2.9e-11 Score=95.53 Aligned_cols=237 Identities=9% Similarity=0.011 Sum_probs=167.6
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY--NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE- 86 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 86 (262)
......+...|++++|...++...... +...+ ...+++.+...+...|++++|.+.+++..+...-..+
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL--------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 345567778999999999988864321 11111 1235677788899999999999999988653111111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---
Q 037499 87 ---EIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQ--R-TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--- 153 (262)
Q Consensus 87 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--- 153 (262)
..++..+...+...|++++|.+.+++..+. +.+ | ...++..+...+...|++++|...+++......
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 234667888899999999999999987643 222 2 234667788899999999999999998876543
Q ss_pred -C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-hHHHH-----HHHHHHHhhCCHHHHHHHHHHHHHhcCCCC
Q 037499 154 -P-DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT-LVTFG-----TLIYGLCLELRVDEALKLKEDMMRVYNVKP 225 (262)
Q Consensus 154 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~p 225 (262)
+ ...++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.... ...+
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~ 248 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFAN 248 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCc
Confidence 1 235677888999999999999999999876421111 11121 2334477899999999999887643 1111
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 226 ---DAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 226 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
....+..+...+...|++++|.+.+++..+
T Consensus 249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133567778889999999999999988754
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.45 E-value=1.1e-11 Score=89.99 Aligned_cols=167 Identities=10% Similarity=-0.060 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT----------------LLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
..+......+...|++++|+..|++..+.. +.+...|.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555667889999999999999998864 445566777 899999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHH
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQV 229 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 229 (262)
.+.+...+..+...+...|++++|...|++..+... .+..++..+..+|...|+ .+.+...+.... ...|....
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a 159 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYA 159 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHH
Confidence 888999999999999999999999999999998743 356788888888776654 344555565553 22333334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 230 FASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+.....++...|++++|...|++.++ +.|+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~ 189 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPS 189 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCC
Confidence 45556677788999999999999887 4554
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=4.2e-12 Score=108.13 Aligned_cols=173 Identities=9% Similarity=-0.047 Sum_probs=147.9
Q ss_pred HhcCChhHHHHHHHHHH--------hcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 62 GRAKMFDEVQQILHQLK--------HDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
...|++++|++.+++.. +. .+.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 77899999999999998 43 35567789999999999999999999999999875 667889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499 134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
..|++++|++.|++..+..+.+...|..+..++.+.|++++ ...|++..+.+. .+...|..+..++.+.|++++|+..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999988889999999999999999999 999999998743 3667888999999999999999999
Q ss_pred HHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 037499 214 KEDMMRVYNVKPD-AQVFASLIKGLCAVGE 242 (262)
Q Consensus 214 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 242 (262)
|+++.+ ..|+ ...+..+..++...++
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence 998874 4665 5567777777766554
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.43 E-value=1.4e-10 Score=85.15 Aligned_cols=188 Identities=9% Similarity=-0.040 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh---hH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK---SF 125 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~ 125 (262)
+...+..+...+.+.|++++|+..|+++.+...-.| ....+..+..+|.+.|++++|++.|+++.+.. +.+.. ++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 456677788889999999999999999987532122 24678888999999999999999999998764 22222 44
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037499 126 NTLLNAMLT------------------CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187 (262)
Q Consensus 126 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 187 (262)
..+..++.. .|++++|+..|+++.+..+.+...+........ +...+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~---- 147 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH----
Confidence 445555543 467777777777777766544444332211100 000000
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 188 QPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.....+...|.+.|++++|+..|+++.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1112456678889999999999999987622111 1256788888999999999999999988775
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=3.6e-11 Score=94.98 Aligned_cols=241 Identities=11% Similarity=0.037 Sum_probs=172.4
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFR-YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVV 84 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~ 84 (262)
+..++..+...|++++|...+++...... ..+.. ....++..+...+...|++++|+..+++..+.. +.+
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMAR------QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677888899999999999988643210 00110 112346778889999999999999998886531 111
Q ss_pred --c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-C
Q 037499 85 --P-EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ----RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-P-D 155 (262)
Q Consensus 85 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~-~ 155 (262)
| ....+..+...+...|++++|...+++..+..-. ....++..+...+...|++++|...+++...... + .
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 2 3456777888999999999999999988754211 1235677888899999999999999998875432 2 2
Q ss_pred hhHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCC
Q 037499 156 ACSYN-----ILMHGCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVK 224 (262)
Q Consensus 156 ~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~ 224 (262)
...+. ..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++..... +..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 289 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch
Confidence 12222 23345779999999999999887643221 12346677788999999999999999876531 212
Q ss_pred CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 225 PDA-QVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 225 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
++. ..+..+..++...|+.++|...+++..+
T Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222 3666777889999999999999988764
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.43 E-value=6.2e-12 Score=88.72 Aligned_cols=162 Identities=8% Similarity=-0.071 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA- 131 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~- 131 (262)
.+......+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. |+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 45556667777777777777777776542 4456667777777777777777777777766543 233332222111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEA 210 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a 210 (262)
+...+...+|+..+++.....+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122223345666666666655666666666666666777777777766666653322 234556666666666666666
Q ss_pred HHHHHHHH
Q 037499 211 LKLKEDMM 218 (262)
Q Consensus 211 ~~~~~~~~ 218 (262)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.42 E-value=3.1e-11 Score=92.00 Aligned_cols=171 Identities=11% Similarity=0.023 Sum_probs=140.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
.+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.....+.........
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 35567778888999999999999999999998875 66778999999999999999999999999877655333334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
...+...++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..+...|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 455778888999999999998874 3467788889999999999999999999998762112236789999999999999
Q ss_pred hhHHHHHHHHHHH
Q 037499 243 LSLALGFKEEMVR 255 (262)
Q Consensus 243 ~~~a~~~~~~m~~ 255 (262)
.++|...+++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999888654
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.42 E-value=2.3e-12 Score=88.48 Aligned_cols=145 Identities=11% Similarity=-0.001 Sum_probs=118.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 93 VISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
|...+...|++++|++.++...... +-+...+..+...|.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4456667789999999999987653 334567778999999999999999999999999899999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH-HHHHHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 037499 173 EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL-KEDMMRVYNVKP-DAQVFASLIKGLCAVGE 242 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 242 (262)
++|...|++..+... -+...+..+...|.+.|++++|.+. +++..+. .| +..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHhCc
Confidence 999999999998643 2577888999999999999876665 5777764 44 56777777777777775
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.40 E-value=3e-11 Score=100.91 Aligned_cols=155 Identities=6% Similarity=-0.067 Sum_probs=124.1
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYG 98 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (262)
.|++++|++.|++... ..+.+...|..+...+.+.|++++|++.+++..+.. +.+...+..+..+|.
T Consensus 2 ~g~~~~A~~~~~~al~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 68 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR-----------HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW 68 (568)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 5789999999999843 344578899999999999999999999999999853 566888999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CChhHH
Q 037499 99 RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS---RRLEDA 175 (262)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a 175 (262)
..|++++|.+.|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...+... |++++|
T Consensus 69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 9999999999999999875 567789999999999999999999999999998888889999999999999 999999
Q ss_pred HHHHHHHHHCCC
Q 037499 176 WKVFDEMLKRRL 187 (262)
Q Consensus 176 ~~~~~~m~~~~~ 187 (262)
.+.+++..+.+.
T Consensus 148 ~~~~~~al~~~p 159 (568)
T 2vsy_A 148 SAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhcCC
Confidence 999999988643
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=8.8e-12 Score=95.28 Aligned_cols=202 Identities=11% Similarity=0.005 Sum_probs=147.5
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT---RVV 84 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~ 84 (262)
+...+..|...|++++|++.|+....... ..+.++ ...+|+.+..+|.+.|++++|+..+++..+.. |-.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQK------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45567788889999999999987633200 001122 25789999999999999999999999887632 111
Q ss_pred c-cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhcCC---CC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC
Q 037499 85 P-EEIIFCNVISFYGRA-RLLEHALQVFDEMSSFNV---QR-T-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD 155 (262)
Q Consensus 85 ~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 155 (262)
. ...++..+..+|... |++++|++.|++..+..- .+ . ..++..+...+.+.|++++|+..|++.....+ +.
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 1 145788899999996 999999999999876420 01 1 35688899999999999999999999988765 22
Q ss_pred h-----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch------HHHHHHHHHHH--hhCCHHHHHHHHHHHH
Q 037499 156 A-----CSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL------VTFGTLIYGLC--LELRVDEALKLKEDMM 218 (262)
Q Consensus 156 ~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~ 218 (262)
. ..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|++.|+++.
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 2 15788888999999999999999998874 2321 13444555554 4567888888886664
No 97
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=5.6e-11 Score=94.27 Aligned_cols=197 Identities=9% Similarity=-0.020 Sum_probs=150.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CCChhhHH
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSFNV------QRTVKSFN 126 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 126 (262)
....+...|++++|+..+++..+...-.+ ...++..+..+|...|++++|++.+++..+..- +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66678889999999999999976311112 356788999999999999999999998875310 11235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCchHHHH
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RL-QPTLVTFG 195 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~ 195 (262)
.+..+|...|++++|++.|++.....+ . ...++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998865433 2 2357889999999999999999999998872 22 33466788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYN---VKPDAQVFASLIKGLCAVGE---LSLALGFKEEM 253 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m 253 (262)
.+...+.+.|++++|...+++..+... .+.....+..+...|...|+ .++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 899999999999999999998765421 11122335667778888888 77777776654
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.40 E-value=3e-11 Score=92.08 Aligned_cols=166 Identities=12% Similarity=-0.083 Sum_probs=141.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhH-HHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSF-NTL 128 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 128 (262)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++.... |+.... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 56677888899999999999999999999864 5678889999999999999999999999998763 444333 333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~ 207 (262)
...+...++.++|+..+++.....+.+...+..+...+...|++++|...|+++.+..... +...+..++..+...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3446778889999999999999889999999999999999999999999999999874332 267889999999999999
Q ss_pred HHHHHHHHHHHH
Q 037499 208 DEALKLKEDMMR 219 (262)
Q Consensus 208 ~~a~~~~~~~~~ 219 (262)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999988654
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.39 E-value=1.4e-10 Score=88.01 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=135.4
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 70 VQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
|+..|++..+. + +++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66677776654 2 45666667888999999999999999999877652 146678888999999999999999999999
Q ss_pred HhcCCC----ChhHHHHHHHHH--Hh--cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 149 EKYVSP----DACSYNILMHGC--VV--SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 149 ~~~~~~----~~~~~~~l~~~~--~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+..+. +..+...++.++ .. .++++.|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 775331 245555555553 33 34899999999999775 344334444555889999999999999977653
Q ss_pred c-C-------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 221 Y-N-------VKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 221 ~-~-------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
. . -+-|..+...+|......|+ +|.+++.++.+ ..|+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~ 285 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHE 285 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCC
Confidence 1 0 13366677677766677787 88999999987 4454
No 100
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=1.7e-10 Score=102.08 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=113.3
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
....++..+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. ++
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~~---------------~~~A~~VLi---e~i~nldrAiE~Aervn-------~p 1105 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFDV---------------NTSAVQVLI---EHIGNLDRAYEFAERCN-------EP 1105 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcCC---------------HHHHHHHHH---HHHhhHHHHHHHHHhcC-------CH
Confidence 345577888888999999999888721 112222222 25566666666666441 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
.+|..+..++.+.|++++|++.|.+. -+...|..++.++.+.|++++|.+.+...++... ++...+.++.+|+
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-cccccHHHHHHHH
Confidence 55666677777777777777666443 3445566666677777777777777666555432 2222223666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 247 (262)
+.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHH
Confidence 666655433221 1 223444445556666666666666666553 14555666666666666666
Q ss_pred HHHHHH
Q 037499 248 GFKEEM 253 (262)
Q Consensus 248 ~~~~~m 253 (262)
+.+++.
T Consensus 1242 EaarKA 1247 (1630)
T 1xi4_A 1242 DGARKA 1247 (1630)
T ss_pred HHHHHh
Confidence 555543
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=8.5e-11 Score=98.15 Aligned_cols=153 Identities=7% Similarity=-0.142 Sum_probs=122.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTD 143 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 143 (262)
.|++++|++.+++..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988743 5568889999999999999999999999999875 5678899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh---CCHHHHHHHHHHHHHh
Q 037499 144 LFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE---LRVDEALKLKEDMMRV 220 (262)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 220 (262)
.+++..+..+.+...+..+..+|.+.|++++|.+.+++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999998888899999999999999999999999999998743 3567888899999999 9999999999999876
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=4.5e-11 Score=87.74 Aligned_cols=187 Identities=9% Similarity=-0.062 Sum_probs=123.6
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRY-NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP 85 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 85 (262)
..+..++..+.+.|++++|+..|+.+... .+..+ ....+..+..++.+.|++++|+..|+++.+...-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR---------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34567888999999999999999998542 12222 346788899999999999999999999987532222
Q ss_pred c-HHHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037499 86 E-EIIFCNVISFYGR------------------ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQ 146 (262)
Q Consensus 86 ~-~~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 146 (262)
. ...+..+..++.. .|++++|+..|+++.+.. |-+..++....... .+..
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~ 144 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKD 144 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHH
Confidence 2 1245555555544 578999999999999764 33343433221110 0001
Q ss_pred HHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 147 IMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|.+.++.+...
T Consensus 145 ~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 145 RL-------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HH-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 11 1112345667777888888888888877753211 1245667777788888888888888877653
No 103
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=5.9e-10 Score=88.24 Aligned_cols=197 Identities=12% Similarity=0.018 Sum_probs=149.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CC-CC-Chhh
Q 037499 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NV-QR-TVKS 124 (262)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~ 124 (262)
......+...|++++|+..|++..+...-.+ ...++..+..+|...|+++.|...+++..+. +. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3455567788999999999999876321112 3557888999999999999999999987653 10 11 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCchHH
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLK-----RRLQPTLVT 193 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~ 193 (262)
++.+..+|...|++++|++.|++...... ....++..+...|...|++++|...+++..+ .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 88899999999999999999988765322 2345788899999999999999999999887 42 334678
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVK--P-DAQVFASLIKGLCAVGE---LSLALGFKEE 252 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 252 (262)
+..+...+.+.|++++|...+++..+...-. | ....+..+...|...|+ ..+|+.++++
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8889999999999999999999988753221 2 23345566666777777 7777776664
No 104
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=1.8e-10 Score=93.43 Aligned_cols=156 Identities=12% Similarity=-0.029 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 89 IFCNVISFYGRAR---LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTC----GKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 89 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
.+..|...|...| +.++|+++|++..+.| +++...+..+...|... +++++|++.|++.. +.++..+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 4444455555555 5555555555555544 33333334444444332 45555555555544 233333444
Q ss_pred HHHH-H--HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499 162 LMHG-C--VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL-----RVDEALKLKEDMMRVYNVKPDAQVFASL 233 (262)
Q Consensus 162 l~~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l 233 (262)
+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|+++|++.. .-+...+..|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~L 324 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYL 324 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHH
Confidence 4433 2 33455555555555555443 3334444443333 33 5555555554443 1233334444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcC
Q 037499 234 IKGLCA----VGELSLALGFKEEMVRNK 257 (262)
Q Consensus 234 ~~~~~~----~g~~~~a~~~~~~m~~~g 257 (262)
...|.. ..+.++|..+|++..+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 433333 224455555555544433
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=9.7e-10 Score=79.83 Aligned_cols=177 Identities=7% Similarity=-0.104 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----CHHHHHHH
Q 037499 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG----KIDRMTDL 144 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~ 144 (262)
+|++.|++..+. -++..+..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|++.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 456677777664 356677778888888888888888888887765 45667777777776 6 78888888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CchHHHHHHHHHHHh----hCCHHHHHHHHH
Q 037499 145 FQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQ-PTLVTFGTLIYGLCL----ELRVDEALKLKE 215 (262)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~ 215 (262)
|++..+. .+...+..+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+.+|+
T Consensus 76 ~~~A~~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 76 AEKAVEA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887654 456677777777776 77888888888888876532 125677777777777 778888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcCC
Q 037499 216 DMMRVYNVKPDAQVFASLIKGLCAV-G-----ELSLALGFKEEMVRNKI 258 (262)
Q Consensus 216 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 258 (262)
+..+. ..+...+..|...|... | +.++|..+|++..+.|.
T Consensus 154 ~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88753 23444666666666653 3 78888888888877764
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.32 E-value=5.5e-10 Score=80.92 Aligned_cols=130 Identities=8% Similarity=-0.042 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...+..+...+...|++++|+..|++.. .|+..++..+..++.+.|++++|++.|++..+.. +.+..+|..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 3456677888899999999999998763 4578889999999999999999999999998875 667788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDA----------------CSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
+|...|++++|+..|++.....+.+. ..+..+..+|.+.|++++|...|++..+..
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999988665444 788899999999999999999999998864
No 107
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=2.8e-09 Score=86.46 Aligned_cols=223 Identities=12% Similarity=0.003 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHhhcCChHHHH----HhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 037499 5 KPTSPFRLASLLRLQKDPKLAL----QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK---MFDEVQQILHQL 77 (262)
Q Consensus 5 ~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 77 (262)
++..+..|+..+...+.++++. .+++.... .++..+..+...|...| +.++|++.|++.
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--------------~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--------------TTDICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--------------TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4455666777777766444443 34444321 13448888899999999 899999999999
Q ss_pred HhcCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHh
Q 037499 78 KHDTRVVPEEIIFCNVISFYGRA----RLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-M--LTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~ 150 (262)
.+.. +++...+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|++.|++..+
T Consensus 206 a~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 206 VSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 8863 56666667777777665 79999999999987 43 45566667666 4 568899999999999887
Q ss_pred cCCCChhHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhc
Q 037499 151 YVSPDACSYNILMHGCVVSR-----RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRVY 221 (262)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 221 (262)
.+ +...+..+...|. .| ++++|...|++.. .| +...+..+...|.. ..++++|..+|++..+.
T Consensus 280 ~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~- 351 (452)
T 3e4b_A 280 AD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN- 351 (452)
T ss_dssp TT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-
T ss_pred CC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-
Confidence 64 6777888888887 55 8999999999887 43 56667777766665 34999999999998764
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC
Q 037499 222 NVKPDAQVFASLIKGLCA----VGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 222 ~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 258 (262)
|. | .....|...|.. ..+.++|..+|+...+.|.
T Consensus 352 g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 352 GQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Ch-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 42 3 344555555653 4578899999888877664
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=2.2e-09 Score=81.43 Aligned_cols=184 Identities=9% Similarity=0.037 Sum_probs=136.4
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHH
Q 037499 25 ALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLE 104 (262)
Q Consensus 25 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (262)
|+..|+..... .+++..++..+..++...|++++|++++.+......-.-+...+..++..+.+.|+.+
T Consensus 85 a~~~l~~l~~~-----------~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d 153 (310)
T 3mv2_B 85 NIEELENLLKD-----------KQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS 153 (310)
T ss_dssp CCHHHHHTTTT-----------SCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhc-----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence 67777766332 2446666778999999999999999999998654211246788889999999999999
Q ss_pred HHHHHHHHHhhcCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH
Q 037499 105 HALQVFDEMSSFNVQR-----TVKSFNTLLNA--MLTCG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA 175 (262)
Q Consensus 105 ~a~~~~~~~~~~~~~~-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 175 (262)
.|.+.+++|.+. .| +..+...+..+ ....| ++.+|..+|+++.... |+..+-..++.++.+.|++++|
T Consensus 154 ~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 154 TASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcCCHHHH
Confidence 999999999875 45 35555666655 33334 8999999999986643 4433334444489999999999
Q ss_pred HHHHHHHHHCC---------CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH
Q 037499 176 WKVFDEMLKRR---------LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA 227 (262)
Q Consensus 176 ~~~~~~m~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 227 (262)
.+.++.+.+.- -+.|..++..+|......|+ +|.++++++.+. .|+.
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~---~P~h 286 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL---DHEH 286 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT---TCCC
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh---CCCC
Confidence 99999776531 13467777677777777787 889999999864 5553
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.27 E-value=6.9e-10 Score=80.64 Aligned_cols=161 Identities=7% Similarity=-0.101 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhcCCCCChhhH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR----LLEHALQVFDEMSSFNVQRTVKSF 125 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 125 (262)
++..+..+...+...+++++|++.|++..+. | +...+..|...|.. + ++++|+++|++..+.| +..++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 7889999999999999999999999999875 2 56778888888887 7 8999999999998865 56678
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 126 NTLLNAMLT----CGKIDRMTDLFQIMEKYVSP--DACSYNILMHGCVV----SRRLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 126 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
..|...|.. .+++++|++.|++..+.++. ++..+..+...|.. .+++++|...|++..+. ..+...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 888888887 88999999999999887653 37889999999988 88999999999999886 22445666
Q ss_pred HHHHHHHhh-C-----CHHHHHHHHHHHHHh
Q 037499 196 TLIYGLCLE-L-----RVDEALKLKEDMMRV 220 (262)
Q Consensus 196 ~li~~~~~~-g-----~~~~a~~~~~~~~~~ 220 (262)
.|...|... | ++++|..+|++..+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 777777643 3 899999999998875
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.27 E-value=2.1e-09 Score=82.10 Aligned_cols=227 Identities=6% Similarity=-0.054 Sum_probs=179.9
Q ss_pred HHHhhcCCh-HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCCccHHHH
Q 037499 14 SLLRLQKDP-KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK--MFDEVQQILHQLKHDTRVVPEEIIF 90 (262)
Q Consensus 14 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (262)
.+..+.|.+ ++|+++++.+.. -.+-+..+|+.-...+...+ ++++++++++.+.... +-+..+|
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~-----------~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW 106 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGIN-----------ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIW 106 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHH-----------HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHH
Confidence 333445555 689999999833 44557888999999999998 9999999999999864 4445555
Q ss_pred HHHHHHH----Hhc---CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCChhHHHH
Q 037499 91 CNVISFY----GRA---RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID--RMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 91 ~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
+.-..++ ... +++++++++++++.+.. +-+..+|+--.-++.+.|.++ ++++.++++.+..+.|...|+.
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5444444 444 78999999999999886 778899998888888899988 9999999999999999999998
Q ss_pred HHHHHHhcCC------hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH-HHHHHHHHHHhc-CCCCCHHHHHHH
Q 037499 162 LMHGCVVSRR------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE-ALKLKEDMMRVY-NVKPDAQVFASL 233 (262)
Q Consensus 162 l~~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~p~~~~~~~l 233 (262)
-.....+.+. ++++++.++.+....+ -|...|+.+-..+.+.|+... +..+..++.+.. .-..+...+..+
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 8888878777 8999999999998754 377888888888888887544 445666554321 123477889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 037499 234 IKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
..+|.+.|+.++|.++++.+.+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.26 E-value=2.1e-09 Score=82.10 Aligned_cols=163 Identities=9% Similarity=-0.028 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC-CCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hhHHH
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFN-VQRTV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----ACSYN 160 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~ 160 (262)
..+..+...|++++|.+.+++..+.. ..++. ..+..+...+...|++++|+..|++...... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34556667777777777777766532 11221 1233455566666677777777777665322 22 22567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----C-CCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCCC-HHHH
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLK----R-RLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKPD-AQVF 230 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~ 230 (262)
.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+.. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777777777777777777777663 1 11112 2356666677777777777777776655421 11222 4566
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHH
Q 037499 231 ASLIKGLCAVGE-LSLALGFKEEMV 254 (262)
Q Consensus 231 ~~l~~~~~~~g~-~~~a~~~~~~m~ 254 (262)
..+..+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 677777777774 477777766654
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=2e-09 Score=90.92 Aligned_cols=218 Identities=10% Similarity=-0.004 Sum_probs=172.3
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHhcCCCCccHHHHHHHHHHHHhcC
Q 037499 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQ-QILHQLKHDTRVVPEEIIFCNVISFYGRAR 101 (262)
Q Consensus 23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (262)
+++..+|++. +...+.+...|...+..+.+.|+.++|. .+|+..... +|.+...|...+....+.|
T Consensus 326 ~Rv~~~Ye~a-----------L~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 326 ARMTYVYMQA-----------AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp HHHHHHHHHH-----------HHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----------HHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhC
Confidence 4456777777 3355668899999999999999999997 999999874 5677878888999999999
Q ss_pred CHHHHHHHHHHHhhcCC---------CC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChhHH
Q 037499 102 LLEHALQVFDEMSSFNV---------QR------------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-VSPDACSY 159 (262)
Q Consensus 102 ~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~ 159 (262)
++++|.++|+++.+... .| ...+|...+....+.|..+.|..+|....+. +......|
T Consensus 393 ~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 393 KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999876310 13 1346888888888899999999999999876 43445555
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCC-C--CHHHHHHHHH
Q 037499 160 NILMHGCVVS-RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVK-P--DAQVFASLIK 235 (262)
Q Consensus 160 ~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-p--~~~~~~~l~~ 235 (262)
...+..-.+. ++.+.|..+|+...+. .+-+...+...+......|+.+.|..+|++.... .+ + ....|...+.
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~--~~~~~~~~~lw~~~~~ 549 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK--ISDSHLLKMIFQKVIF 549 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT--SSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 5444444444 4599999999999987 3445667778888888899999999999999864 22 1 3467888888
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 037499 236 GLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 236 ~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.-.+.|+.+.+..+.+++.+.
T Consensus 550 fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 550 FESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999999885
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=3e-10 Score=87.37 Aligned_cols=193 Identities=11% Similarity=0.044 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-Chh
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDT---RVVP-EEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVK 123 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 123 (262)
.|......|...|++++|...|.+..+.. +-++ -..+|..+..+|.+.|++++|+..|++..+. |-+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 56666777777788888888877766531 1111 1346777777777788888888888776543 2111 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc-hH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT-LV 192 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~ 192 (262)
++..+..+|.. |++++|+..|++.....+ . ...++..+...|.+.|++++|...|++.... +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 56677777777 888888888877655432 1 1456777777888888888888888777653 11111 12
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChhHHHH
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~ 248 (262)
.+..+..++...|++++|...|++.. ...-.++.. ....++.++ ..|+.+.+.+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45555556666788888888887776 411111221 233444444 4566655555
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.25 E-value=1.1e-10 Score=88.72 Aligned_cols=195 Identities=10% Similarity=0.006 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 66788899999999999999999999999853 5578889999999999999999999999999875 66778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
.+|...|++++|+..|++.....+.+...+...+....+. .++. .+..........+......+ ..+ ..|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 9999999999999999988775542221221122211111 1111 11222223334444444444 232 3799999
Q ss_pred HHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHHHHHc
Q 037499 210 ALKLKEDMMRVYNVKPDAQ-VFASLIKGLCAV-GELSLALGFKEEMVRN 256 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 256 (262)
|++.+++..+ ..|+.. ....+...+.+. +.+++|.++|.+..+.
T Consensus 154 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999888764 356543 334444444444 6688899999877653
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.25 E-value=1e-09 Score=73.03 Aligned_cols=123 Identities=9% Similarity=0.001 Sum_probs=92.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh
Q 037499 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS 124 (262)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (262)
...+.+...|..+...+...|++++|+..|++..+. .+.+..++..+..++...|++++|++.+++..+.. +.+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 344557778888888888888888888888888764 24467778888888888888888888888887764 456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
+..+..++.+.|++++|.+.|++.....+.+...+..+..++.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777888888888888888888877766655666666666665544
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=2.8e-09 Score=77.16 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=112.6
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
.+..++..+...|++++|+..|+... .++..+|..+...+.+.|++++|+..+++..+.. +.+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLA 71 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch
Confidence 35677888999999999999999982 2377899999999999999999999999998853 5678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV----------------KSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
..+..+..++...|++++|++.|++..+.. +.+. ..+..+..+|...|++++|.+.|+.....
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 889999999999999999999999998753 2222 78889999999999999999999999887
Q ss_pred CC
Q 037499 152 VS 153 (262)
Q Consensus 152 ~~ 153 (262)
.+
T Consensus 151 ~p 152 (213)
T 1hh8_A 151 KS 152 (213)
T ss_dssp CC
T ss_pred Cc
Confidence 66
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.24 E-value=1.1e-09 Score=75.87 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++.....+.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 4444445555555555555555554433 334444555555555555555555555555554444455555555555555
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHH--HHHHHHHHhhCCHHHHHHHHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTF--GTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
|++++|...+++..+.... +...+ ......+...|++++|+..+...
T Consensus 95 ~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555543211 22222 22222244555666665555544
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.24 E-value=9.2e-10 Score=72.98 Aligned_cols=109 Identities=6% Similarity=0.032 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 3445555566666666666666666655532 3445555556666666666666666666655544 444555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL 162 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 162 (262)
+|...|++++|++.|++..+..|.+...+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 66666666666666665555555444444433
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=1.8e-09 Score=74.76 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
....|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|++.+++..+.. +.+..++..+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34556667777777777777777777776642 4456667777777777777777777777776654 44566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHH--HHHHHhcCChhHHHHHHHHHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNIL--MHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.++...|++++|...|++.....+.+...+..+ +..+...|++++|...+.....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777777777776666555555333 3336666777777777665543
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.22 E-value=7.4e-10 Score=73.32 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.+...|..+...+...|+++.|+..+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 86 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence 355666667777777777777777777776642 3456666667777777777777777777766654 4445666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL 172 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 172 (262)
..++...|++++|...|++.....+.+...+..+..++.+.|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66777777777777777776666555666666666666665553
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.21 E-value=9.6e-10 Score=78.87 Aligned_cols=158 Identities=11% Similarity=-0.004 Sum_probs=110.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC-CChhhHHHHHHHHHhc
Q 037499 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQ-RTVKSFNTLLNAMLTC 135 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~ 135 (262)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 34678899999966665542 2346778888888999999999999999887652 212 2345677888888899
Q ss_pred CCHHHHHHHHHHHHhcCC--C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCc--hHHHHHHHHHHHh
Q 037499 136 GKIDRMTDLFQIMEKYVS--P-----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR---LQPT--LVTFGTLIYGLCL 203 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~ 203 (262)
|++++|.+.+++...... + ....+..+...+...|++++|...+++..... ..+. ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 999999999887765411 2 23457778888888899999998888876431 1111 2335667777888
Q ss_pred hCCHHHHHHHHHHHHHh
Q 037499 204 ELRVDEALKLKEDMMRV 220 (262)
Q Consensus 204 ~g~~~~a~~~~~~~~~~ 220 (262)
.|++++|.+.+++..+.
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 88998888888888765
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.20 E-value=2.3e-09 Score=70.29 Aligned_cols=113 Identities=12% Similarity=0.094 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|..+...+...|++++|++.++++.+.. +.+..++..+..++...|++++|..+|+++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 4455556666666666666666666665532 3345555556666666666666666666655543 344555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
++...|++++|...|+++....+.+...+..+...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 666666666666666665555444444444444443
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.20 E-value=1.4e-08 Score=77.45 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----AC 157 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~ 157 (262)
.+...+..+...|++++|.+.+.+..+..-... ...+..+...+...|++++|+..+++...... .+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998876532211 12244466677888999999999999875433 11 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH---C-CCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc---CCCC-CH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLK---R-RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRVY---NVKP-DA 227 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~ 227 (262)
+++.+...|...|++++|...+++..+ . +..+ ...++..+...|...|++++|+..+++..+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 889999999999999999999999873 2 1111 12588888999999999999999999876541 1111 16
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 037499 228 QVFASLIKGLCAVGELSLA-LGFKEEMV 254 (262)
Q Consensus 228 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 254 (262)
.+|..+..+|.+.|+.++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6888999999999999999 77777754
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=1.5e-09 Score=83.50 Aligned_cols=174 Identities=11% Similarity=0.022 Sum_probs=124.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHHHhcCCH
Q 037499 64 AKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF----NVQR-TVKSFNTLLNAMLTCGKI 138 (262)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~ 138 (262)
.++++.|...|.+. ...|...|++++|.+.|.+..+. +-.+ ...+|+.+..+|...|++
T Consensus 29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence 47788888877765 34667788999998888877543 2111 135788888888899999
Q ss_pred HHHHHHHHHHHhcC----CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--chHHHHHHHHHHHhhCCH
Q 037499 139 DRMTDLFQIMEKYV----SP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ---P--TLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 139 ~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~ 207 (262)
++|+..|++..... .+ -..++..+...|.. |++++|+..|++..+.... + ...++..+...|.+.|++
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 99999888765432 22 24577888888888 9999999999887753111 0 145777888888999999
Q ss_pred HHHHHHHHHHHHhcCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 208 DEALKLKEDMMRVYNVKP---D-AQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 208 ~~a~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
++|+..|++..+...-.+ + ...+..+..++...|++++|...|++..
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999988766421112 2 2366677777888899999999988876
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=7.8e-11 Score=84.65 Aligned_cols=155 Identities=8% Similarity=-0.054 Sum_probs=67.3
Q ss_pred CHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc-
Q 037499 8 SPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE- 86 (262)
Q Consensus 8 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 86 (262)
.+...+......|+++++.+.++.... ........+..+...+...|++++|+..|++..+...-.|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 74 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDE-----------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74 (198)
T ss_dssp ----------------CCCSGGGCCHH-----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC
T ss_pred cccchhhhhhhhhhccccCchhhCCHH-----------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 344455555556666666666654411 11223445666666666677777777777666653211110
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 87 -------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 87 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
..++..+..+|.+.|++++|+..+++..+.. +.+..++..+..+|...|++++|+..|++.....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 1344444445555555555555555544432 33344444444445555555555555554444444
Q ss_pred CChhHHHHHHHHHHhcCChhH
Q 037499 154 PDACSYNILMHGCVVSRRLED 174 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~ 174 (262)
.+...+..+..++...++.++
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=2.8e-09 Score=81.36 Aligned_cols=216 Identities=8% Similarity=-0.019 Sum_probs=174.1
Q ss_pred CCCCCCCHHHHHHHHhhcC--ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----Hhc---CChhHHHH
Q 037499 2 NKAKPTSPFRLASLLRLQK--DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKL----GRA---KMFDEVQQ 72 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~ 72 (262)
+|.+...|+.-..++...| +++++++.++.+.. ..+-+..+|+.-...+ ... +++++++.
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-----------~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-----------DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-----------HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-----------HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 5666667888888888888 99999999999843 4455777888777666 555 78999999
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC------HHHHHHH
Q 037499 73 ILHQLKHDTRVVPEEIIFCNVISFYGRARLLE--HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK------IDRMTDL 144 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~ 144 (262)
+++.+.+.. +-+..+|+.-.-++.+.+.++ ++++.++++.+.. +.|..+|+.-...+.+.+. ++++++.
T Consensus 132 ~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 132 ILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 999999864 677888888777788888888 9999999999887 6788899888888888777 8999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 037499 145 FQIMEKYVSPDACSYNILMHGCVVSRRLED-AWKVFDEMLKRR--LQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221 (262)
Q Consensus 145 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 221 (262)
+.++....+.|...|+-....+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 209 ~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-- 286 (306)
T 3dra_A 209 VKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-- 286 (306)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999999999999999999999988888554 556777666543 134678899999999999999999999999975
Q ss_pred CCCC-CHHHHHHH
Q 037499 222 NVKP-DAQVFASL 233 (262)
Q Consensus 222 ~~~p-~~~~~~~l 233 (262)
...| ....|...
T Consensus 287 ~~Dpir~~yW~~~ 299 (306)
T 3dra_A 287 KYNPIRSNFWDYQ 299 (306)
T ss_dssp TTCGGGHHHHHHH
T ss_pred ccChHHHHHHHHH
Confidence 3344 34445443
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.19 E-value=1.2e-10 Score=90.83 Aligned_cols=87 Identities=11% Similarity=-0.082 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (262)
.+|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+... .+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 44455555555555555555555555554444455555555555555555555555555554321 13344444444555
Q ss_pred hhCCHHHH
Q 037499 203 LELRVDEA 210 (262)
Q Consensus 203 ~~g~~~~a 210 (262)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=1.2e-09 Score=72.39 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
..+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+..+.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456666777777777777777777776664 5566677777777777777777777777777766666777777777777
Q ss_pred hcCChhHHHHHHHHHHHC
Q 037499 168 VSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~ 185 (262)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 777777777777777664
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=3.5e-09 Score=69.33 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455666666666677777777776666553 344556666666666666666666666666665555556666666666
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 037499 167 VVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~ 185 (262)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.18 E-value=1.1e-08 Score=78.05 Aligned_cols=167 Identities=11% Similarity=0.015 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--hh
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSSFNV---QRT--VK 123 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 123 (262)
.+...+..+...|++++|++.+.+..+.....++. ..+..+...+...|++++|++.+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34556778889999999999999887753222211 2344566777888999999999999875321 111 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-ch
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY---VSP----DACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQP-TL 191 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~~ 191 (262)
+|+.+...|...|++++|+..|++..+. .+. ...++..+...|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999988732 221 22688999999999999999999999987531 111 15
Q ss_pred HHHHHHHHHHHhhCCHHHH-HHHHHHHHH
Q 037499 192 VTFGTLIYGLCLELRVDEA-LKLKEDMMR 219 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 219 (262)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888999999999999 777877654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.17 E-value=9.2e-10 Score=77.41 Aligned_cols=122 Identities=7% Similarity=0.095 Sum_probs=99.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHhcCCH--
Q 037499 62 GRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNA-MLTCGKI-- 138 (262)
Q Consensus 62 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~-- 138 (262)
...|++++|+..++...+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 45688889999998888753 5677888889999999999999999999988765 5567778888888 7788888
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037499 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 186 (262)
++|...|++.....+.+...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999988877778888889999999999999999999988863
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=3.3e-09 Score=70.43 Aligned_cols=120 Identities=8% Similarity=-0.055 Sum_probs=78.3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+...+..+...+...|++++|.+.|++..+.. +.+..++..+..++...|++++|+..+++.....+.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3455666777777777777777777777776654 445666777777777777777777777777666666666777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++.+.|++++|...|++..+... .+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 777777777777777777666421 13344444444444433
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=2.8e-09 Score=76.41 Aligned_cols=157 Identities=11% Similarity=-0.081 Sum_probs=109.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHhcCC
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY------VSPDACSYNILMHGCVVSRR 171 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~ 171 (262)
...|++++|.+.++.+.... .....++..+...+...|++++|...+++.... .+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45688888888555554321 235567888888888899999999888877652 22445677888888889999
Q ss_pred hhHHHHHHHHHHHC----CCCC--chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcC
Q 037499 172 LEDAWKVFDEMLKR----RLQP--TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD----AQVFASLIKGLCAVG 241 (262)
Q Consensus 172 ~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g 241 (262)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+......+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888887653 2111 2345777778888889999999888887643111122 234677778888899
Q ss_pred ChhHHHHHHHHHHH
Q 037499 242 ELSLALGFKEEMVR 255 (262)
Q Consensus 242 ~~~~a~~~~~~m~~ 255 (262)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888887654
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.15 E-value=8.7e-10 Score=75.44 Aligned_cols=99 Identities=10% Similarity=-0.011 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+...+..+...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..|++.....+.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34566677777777777777777777777765 55667777777777777777777777777777777777777777777
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 037499 166 CVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~ 185 (262)
|.+.|++++|...|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777775
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=1.1e-09 Score=74.80 Aligned_cols=99 Identities=10% Similarity=-0.047 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34445555566666666666666666665544 44555566666666666666666666666665555555566666666
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 037499 166 CVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~ 185 (262)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665553
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2.3e-09 Score=80.25 Aligned_cols=204 Identities=12% Similarity=-0.048 Sum_probs=149.2
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLI-------ITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
+.....+ ..++.+.|.+.|..+.. -.+-....|..+ ...+.+.++..+++..+..-.+
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~-----------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--- 75 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITN-----------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--- 75 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHH-----------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3444555 68999999999999843 445577888888 5666666666666666655544
Q ss_pred CCcc----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499 83 VVPE----------------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140 (262)
Q Consensus 83 ~~~~----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 140 (262)
+.|+ ......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++
T Consensus 76 l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~d 153 (282)
T 4f3v_A 76 ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTD 153 (282)
T ss_dssp CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHH
T ss_pred CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHH
Confidence 1221 2345567788889999999999999988754 443366777778999999999
Q ss_pred HHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 141 MTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--LVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 141 a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
|+..|+.......+ ....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|++
T Consensus 154 A~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 154 VIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999855443222 134788889999999999999999999985433243 33555666788999999999999999
Q ss_pred HHHhcCCCCCHHHHHHH
Q 037499 217 MMRVYNVKPDAQVFASL 233 (262)
Q Consensus 217 ~~~~~~~~p~~~~~~~l 233 (262)
+... .|+...+..|
T Consensus 234 a~a~---~P~~~~~~aL 247 (282)
T 4f3v_A 234 LQTT---HPEPKVAAAL 247 (282)
T ss_dssp HHHH---SCCHHHHHHH
T ss_pred HHhc---CCcHHHHHHH
Confidence 9876 5664444444
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.14 E-value=1.8e-08 Score=76.90 Aligned_cols=167 Identities=11% Similarity=0.006 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CC----hh
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI----IFCNVISFYGRARLLEHALQVFDEMSSFNVQ-RT----VK 123 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 123 (262)
.+...+..+...|++++|..++++..+.....|+.. .+..+...+...+++++|++.|++..+.... ++ ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 344457788999999999999999987543344432 3445777778888999999999999874322 22 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc-h
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT-L 191 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~ 191 (262)
+++.+..+|...|++++|+..|+++.+. .. ....++..+...|.+.|++++|...+++..+. +..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 6899999999999999999999988742 11 23458899999999999999999999988753 22222 5
Q ss_pred HHHHHHHHHHHhhC-CHHHHHHHHHHHHH
Q 037499 192 VTFGTLIYGLCLEL-RVDEALKLKEDMMR 219 (262)
Q Consensus 192 ~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 219 (262)
.+|..+..++.+.| ++++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67888888999999 47999999988753
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.14 E-value=6.1e-10 Score=76.21 Aligned_cols=103 Identities=6% Similarity=-0.016 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (262)
+.+...+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|++.|++..+.. |.+...|..
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 4477889999999999999999999999999864 6678899999999999999999999999999876 667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
+..+|...|++++|+..|++.....+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988654
No 139
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=2e-09 Score=90.94 Aligned_cols=206 Identities=9% Similarity=0.066 Sum_probs=162.7
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHH-HhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLAL-QLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT 81 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (262)
|..+..|...+..+.+.|+.++|. ++|+.... ..+.+...|..++...-+.|+++.|.++|+.+....
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~-----------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ-----------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 455667888888888999999997 99998733 344577788889999999999999999999988631
Q ss_pred ---------CCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcC-CHH
Q 037499 82 ---------RVVP-----------EEIIFCNVISFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCG-KID 139 (262)
Q Consensus 82 ---------~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g-~~~ 139 (262)
..+. ...+|...+....+.|+.+.|.++|.+..+. + ......|...+..-.+.+ +.+
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHH
Confidence 0111 2346888888888899999999999999875 2 223444544444444544 589
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ--PTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.|..+|+...+..+.+...|...+......|+.+.|..+|++....... -....|...+..-.+.|+.+.+.++.+++
T Consensus 488 ~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 488 TACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998887778888889999999999999999999999987432 14567888888888999999999999999
Q ss_pred HHh
Q 037499 218 MRV 220 (262)
Q Consensus 218 ~~~ 220 (262)
.+.
T Consensus 568 ~~~ 570 (679)
T 4e6h_A 568 FEK 570 (679)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.14 E-value=2.9e-09 Score=70.39 Aligned_cols=117 Identities=9% Similarity=-0.075 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...++......+.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4455555566666666666666666655543 334555555566666666666666666665555444555555555555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
...|++++|...+++..+... .+...+..+..++.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 555555555555555555421 13334444444444443
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=2.3e-09 Score=73.15 Aligned_cols=99 Identities=11% Similarity=-0.096 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 121 TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 121 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
+...+..+...+.+.|++++|+..|+......+.+...|..+..+|...|++++|...|++...... .+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3444555555566666666666666666555555555666666666666666666666666555421 234455555555
Q ss_pred HHhhCCHHHHHHHHHHHHHh
Q 037499 201 LCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~~ 220 (262)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666655543
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.12 E-value=1.7e-09 Score=76.04 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=102.9
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHhcCCh--hH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG-CVVSRRL--ED 174 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 174 (262)
...|++++|++.+++..+.. +.+...|..+..+|...|++++|+..|++.....+.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45788999999999988775 66778999999999999999999999999998888888899999998 8899998 99
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 175 AWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 175 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
|...+++..+... .+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999998742 35677888889999999999999999999875
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=2.3e-08 Score=77.25 Aligned_cols=228 Identities=8% Similarity=-0.020 Sum_probs=173.5
Q ss_pred HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
-....+.+..++|+++++.+.. -.+-+..+|+.--..+...+ .+++++++++.+.... +-+..+|+
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~-----------~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~ 127 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVR-----------MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWH 127 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHH-----------hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 3344456666789999999843 45558888999888888888 5999999999999853 66777888
Q ss_pred HHHHHHHhc-C-CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCCChhHHHH
Q 037499 92 NVISFYGRA-R-LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID--------RMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 92 ~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
.-..++.+. + ++++++++++++.+.. +.+..+|+--.-++.+.|.++ ++++.++++.+..+.|...|+.
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 777777776 6 8999999999999876 678888887777776666666 9999999999998899999999
Q ss_pred HHHHHHhcCC-------hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH--------------------HHHHHHH
Q 037499 162 LMHGCVVSRR-------LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV--------------------DEALKLK 214 (262)
Q Consensus 162 l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~ 214 (262)
....+.+.+. ++++++.++++....+ -|...|+-+-..+.+.|+. .....+.
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 9988888886 6889999999888643 3667777666666665543 3334444
Q ss_pred HHHHHhc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 215 EDMMRVY----NVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 215 ~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
..+.... .-.++......|+..|...|+.++|.++++.+.+
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3443221 0136788899999999999999999999999864
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.10 E-value=8.5e-09 Score=80.29 Aligned_cols=131 Identities=11% Similarity=-0.002 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
+...|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|++.|++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666666666666666666666542 222 3566666666666666666666666666
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 037499 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDA-WKVFDEML 183 (262)
Q Consensus 115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 183 (262)
+.. +.+..+|..+..+|...|++++|+..|++..+..+.+...+..+..++.+.|++++| ...++.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 445566666666666666666666666666666665666666666666666666665 33444444
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.10 E-value=3.1e-09 Score=71.93 Aligned_cols=101 Identities=16% Similarity=0.081 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 44555556666666666666666666666542 3455566666666666666666666666666554 44555566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.+|...|++++|...|+......+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666666666666666666655443
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.09 E-value=4.1e-10 Score=85.52 Aligned_cols=195 Identities=7% Similarity=-0.086 Sum_probs=132.6
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
.+...+..++..+.+.|++++|+..|+.... ..+.+...|..+..++.+.|++++|+..+++..+. -
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 68 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT-----------RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--D 68 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--C
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 3445678889999999999999999998843 33448899999999999999999999999999874 3
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+...+..+..++...|++++|++.|++..+.. +.+...+...+....+ ..++...........+.+......+.
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5668889999999999999999999999987653 1111122222222221 11122222222222224444444443
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhh-CCHHHHHHHHHHHHH
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKRRLQPTL-VTFGTLIYGLCLE-LRVDEALKLKEDMMR 219 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 219 (262)
. + ..|++++|.+.++...+. .|+. .....+...+.+. +.+++|.++|..+.+
T Consensus 145 ~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 R-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp H-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred H-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3 2 368899999998887765 3443 3333343444444 678899999987754
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.09 E-value=1.6e-09 Score=81.15 Aligned_cols=187 Identities=7% Similarity=-0.114 Sum_probs=140.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCCC--------------
Q 037499 63 RAKMFDEVQQILHQLKHDTRVVPEEIIFCNV-------ISFYGRARLLEHALQVFDEMSSFNVQRT-------------- 121 (262)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 121 (262)
..++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 6899999999999999864 4556778777 4556666666666666655544 1221
Q ss_pred --------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--h
Q 037499 122 --------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--L 191 (262)
Q Consensus 122 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~ 191 (262)
...+..+...+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 12344567788899999999999999887665344 66777778999999999999998655431 121 3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 192 VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD--AQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 192 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
..+..+-.++.+.|++++|+..|++.... ...|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 36777888999999999999999999752 22254 346667777899999999999999999874
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.08 E-value=8.3e-09 Score=68.16 Aligned_cols=96 Identities=5% Similarity=0.005 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 44444445555555555555555544431 3334444445555555555555555555444443 33344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 037499 133 LTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~ 151 (262)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 5555555555554444433
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=2e-08 Score=64.93 Aligned_cols=108 Identities=8% Similarity=-0.023 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3445555555555666666666665555432 3344555555555555556666665555555443 334445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
++...|++++|.+.++......+.+...+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5555555555555555555544444444333
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.3e-08 Score=67.13 Aligned_cols=98 Identities=8% Similarity=-0.044 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++.....+.+...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456666667777777777777777776654 455666777777777777777777777777766666666777777777
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 037499 167 VVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~ 185 (262)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766654
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.03 E-value=2e-08 Score=69.67 Aligned_cols=107 Identities=9% Similarity=-0.002 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHH
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNT 127 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (262)
+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3466677778888888888888888888887753 4567777788888888888888888888877765 556677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCChh
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (262)
+..+|...|++++|+..|++.....+.+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 888888888888888888877776664443
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.02 E-value=1.2e-08 Score=69.04 Aligned_cols=99 Identities=9% Similarity=-0.059 Sum_probs=80.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+...+..+...+.+.|++++|++.|++..... +.+...|..+..+|.+.|++++|+..|++.....+.+...+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 44556667778888888888888888888765 56777888888888888888888888888888877777888888888
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 037499 166 CVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~ 185 (262)
|...|++++|...|+...+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.02 E-value=1.1e-09 Score=78.55 Aligned_cols=149 Identities=9% Similarity=-0.062 Sum_probs=64.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---------------
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV--------------- 122 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------- 122 (262)
+......|+++.+.+.|..-... .......+..+...+.+.|++++|++.|++..+.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -----------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHH
Confidence 33344444555555554433221 11223445555556666666666666666665432 1111
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHH
Q 037499 123 -KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGL 201 (262)
Q Consensus 123 -~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 201 (262)
.+|..+..+|...|++++|+..++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 3444445555555555555555555554444444455555555555555555555555544432 11233444444444
Q ss_pred HhhCCHHHH
Q 037499 202 CLELRVDEA 210 (262)
Q Consensus 202 ~~~g~~~~a 210 (262)
...++.+++
T Consensus 167 ~~~~~~~~~ 175 (198)
T 2fbn_A 167 NKLKEARKK 175 (198)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 444444333
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.02 E-value=3.1e-08 Score=68.61 Aligned_cols=101 Identities=8% Similarity=0.028 Sum_probs=89.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456778888899999999999999999998875 557888999999999999999999999999988888889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999998876
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=5.1e-08 Score=62.99 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455666666677777777777777766554 445566666666677777777777777766666555666666666666
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 037499 167 VVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~ 185 (262)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6777777777776666654
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.00 E-value=1.7e-08 Score=67.51 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 355566666666666666666666666665532 3345556666666666666666666666665544 3445555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~ 150 (262)
..++...|++++|+..|++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666655544
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=7.3e-08 Score=65.12 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499 48 RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE----EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123 (262)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (262)
+.+...+..+...+...|++++|+..|++..+. .|+ ...+..+..+|...|++++|++.+++..+.. +.+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 457788888889999999999999999998864 344 6778888888888899999999998887764 45677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
.+..+..++...|++++|...|++.....+.+...+..+....
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7888888888888888888888888877666666665554443
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=8.8e-09 Score=66.07 Aligned_cols=96 Identities=10% Similarity=-0.045 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--ChhhHHHHH
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--TVKSFNTLL 129 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll 129 (262)
..|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 334444444444444444444444444321 2233344444444444444444444444444332 22 233444444
Q ss_pred HHHHhc-CCHHHHHHHHHHHHh
Q 037499 130 NAMLTC-GKIDRMTDLFQIMEK 150 (262)
Q Consensus 130 ~~~~~~-g~~~~a~~~~~~~~~ 150 (262)
.++... |++++|.+.++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 444444444444433
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=5.9e-07 Score=69.13 Aligned_cols=223 Identities=7% Similarity=-0.050 Sum_probs=165.8
Q ss_pred HHhhcCChH-HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCC
Q 037499 15 LLRLQKDPK-LALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM----------FDEVQQILHQLKHDTRV 83 (262)
Q Consensus 15 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 83 (262)
...+.|.++ +|+++++.+.. -.+-+..+|+.--..+...+. +++++.+++.+....
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~-----------~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-- 104 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILG-----------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-- 104 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHT-----------TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--
Confidence 334566666 79999999843 445577778876666655544 688999999998853
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHHH
Q 037499 84 VPEEIIFCNVISFYGRAR--LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSYN 160 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~ 160 (262)
+-+..+|+.-..++.+.+ .+++++++++++.+.. +.|..+|+--.-++...|. ++++++.+..+.+..+.|...|+
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 667778887777777777 4899999999999887 7788999988888888888 69999999999999999999998
Q ss_pred HHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-----------CCHHHHHHHHH
Q 037499 161 ILMHGCVVS--------------RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-----------LRVDEALKLKE 215 (262)
Q Consensus 161 ~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~ 215 (262)
.....+.+. +.++++++.+.......+ -|...|+-+-..+.+. +.++++++.++
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 877776665 457889999999888643 3666666444444444 46889999999
Q ss_pred HHHHhcCCCCCH-HHHHHHHH---HHHhcCChhHHHHHHHHHHH
Q 037499 216 DMMRVYNVKPDA-QVFASLIK---GLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 216 ~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~m~~ 255 (262)
++.+. .||. -.+..++. .....|..+++..++.++++
T Consensus 263 elle~---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 263 ELQEL---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHhh---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 99875 5653 22222221 12245777888999999876
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.99 E-value=2.1e-08 Score=66.44 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-------ACSYNI 161 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 161 (262)
.+..+...+.+.|++++|++.|++..+.. |.+..+|..+..+|.+.|++++|++.+++..+..+.+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555443 3344455555555555555555555555544332211 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
+..++...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555555555444
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.98 E-value=3.2e-08 Score=66.17 Aligned_cols=101 Identities=7% Similarity=-0.073 Sum_probs=79.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILM 163 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 163 (262)
+.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..++......+.+...+..+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3456677778888888888888888888877765 556677888888888888888888888888777777777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877764
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.98 E-value=3.1e-08 Score=65.63 Aligned_cols=109 Identities=6% Similarity=0.012 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCc----hHHHH
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPT----LVTFG 195 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~ 195 (262)
..++..+...+.+.|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++..+... .++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 346778899999999999999999999998888899999999999999999999999999887421 111 23677
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASL 233 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 233 (262)
.+..++...|++++|++.|++.... .||..+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHHH
Confidence 7778888999999999999998765 5676654433
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.97 E-value=1.5e-08 Score=66.92 Aligned_cols=94 Identities=11% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------hhHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD-------ACSYNIL 162 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l 162 (262)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444444455555555554444432 2334444444444444455555544444443332211 3344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
..++.+.|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.96 E-value=2.1e-08 Score=64.26 Aligned_cols=101 Identities=6% Similarity=-0.018 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--ChhHHHHHH
Q 037499 86 EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSP--DACSYNILM 163 (262)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 163 (262)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567788889999999999999999998875 567788999999999999999999999999988777 899999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHHCCC
Q 037499 164 HGCVVS-RRLEDAWKVFDEMLKRRL 187 (262)
Q Consensus 164 ~~~~~~-g~~~~a~~~~~~m~~~~~ 187 (262)
.++.+. |++++|.+.+++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999998743
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1.6e-07 Score=75.40 Aligned_cols=213 Identities=8% Similarity=-0.111 Sum_probs=146.5
Q ss_pred CCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCC-CCCCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 037499 7 TSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQ-PLKPF-----RYNLLHYDLIITKLGRAKMFDEVQQILHQLKHD 80 (262)
Q Consensus 7 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (262)
.+-..-+..+.+.|++++|++.|..+.......... ...+. +....++..++..|...|++++|.+.+.++...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455778899999999999998765432100000 00000 001134778999999999999999999988763
Q ss_pred CCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 81 TRVVPEE----IIFCNVISFYGRARLLEHALQVFDEMSS----FNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 81 ~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
.+..++. .+.+.+...+...|++++|.+++..... .+..+. ..++..+...|...|++++|..+++.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 2222222 2333444455567899999999987753 222222 457788999999999999999999887654
Q ss_pred CC------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 152 VS------PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 152 ~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.. ....++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 23457889999999999999999999887653 11111 24556666777888999999988877654
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.91 E-value=3.7e-08 Score=64.96 Aligned_cols=114 Identities=5% Similarity=-0.000 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCc----hHHHH
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL--QPT----LVTFG 195 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~ 195 (262)
...+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999999988888889999999999999999999999999887532 112 66788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC 238 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 238 (262)
.+..++...|++++|.+.|++..+. .|+......+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 8889999999999999999999875 456666655554443
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.5e-07 Score=75.61 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=143.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-C
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQ-R 120 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 120 (262)
-...+.+.|++++|++.|.++.+...-..+ ...+..+...|...|++++|.+++..+.+.--. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 456778899999999999999875311111 234778999999999999999999987653111 1
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-
Q 037499 121 TV----KSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----S--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RL- 187 (262)
Q Consensus 121 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~- 187 (262)
+. .+.+.+...+...|++++|..+++...... . .-..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 233344445556789999999998775432 1 23567888999999999999999999988753 11
Q ss_pred -CC-chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC-CC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 188 -QP-TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN-VK-P-D--AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 188 -~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-p-~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.+ ...++..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 245788888999999999999999988765311 11 2 1 24566667777889999999988877654
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=1.6e-07 Score=72.56 Aligned_cols=217 Identities=14% Similarity=-0.012 Sum_probs=162.3
Q ss_pred CCCCCCCHHHHHHHHhhcC-ChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHH
Q 037499 2 NKAKPTSPFRLASLLRLQK-DPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA-K-MFDEVQQILHQLK 78 (262)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~ 78 (262)
+|.+...|+.-..++...| +++++++.++.+. ...+-+..+|+.-...+.+. + ++++++++++.+.
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-----------~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-----------VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----------HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4556666777777787888 5999999999984 35566889999988888887 7 8999999999999
Q ss_pred hcCCCCccHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-------HHHHHH
Q 037499 79 HDTRVVPEEIIFCNVISFYGRARLLE--------HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-------IDRMTD 143 (262)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~ 143 (262)
+.. +-+..+|+.-.-++.+.+.++ ++++.++++.+.. +.|..+|+-....+.+.+. ++++++
T Consensus 153 ~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 153 LPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELI 229 (349)
T ss_dssp SSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 854 566777776555555555555 8999999999887 6788999999888888876 789999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCchHHHHHHH
Q 037499 144 LFQIMEKYVSPDACSYNILMHGCVVSRRL--------------------EDAWKVFDEMLKRR-----LQPTLVTFGTLI 198 (262)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~~~~~~~~~li 198 (262)
.+.+.....+.|...|+-+-..+.+.|.. .........+...+ -.++...+..++
T Consensus 230 ~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 230 YILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 99999998899999998877777776654 23333333333321 135788899999
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 037499 199 YGLCLELRVDEALKLKEDMMRVYNVKP-DAQVFASLI 234 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 234 (262)
..|...|+.++|.++++.+.+ ...| ...-|...+
T Consensus 310 d~~~~~~~~~~a~~~~~~l~~--~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFEKLSS--EYDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--TTCGGGHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHh--hhChHHHHHHHHHH
Confidence 999999999999999999975 3344 333444433
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.8e-07 Score=63.20 Aligned_cols=99 Identities=9% Similarity=-0.076 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYN 160 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 160 (262)
.+...+..+...+...|++++|++.|++..+.. |+ ...+..+..+|...|++++|+..+++.....+.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456677777888888888888888888887653 44 566777777788888888888888877776666677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777778888888777777765
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.86 E-value=4.4e-08 Score=64.28 Aligned_cols=96 Identities=4% Similarity=-0.093 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555666666666666666665532 3445555566666666666666666666665553 33455555566666
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 037499 133 LTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~ 151 (262)
...|++++|+..|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=3e-07 Score=60.61 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=50.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---hhhHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEE---IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT---VKSFNTLL 129 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll 129 (262)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..+.. +.+ ..++..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455555666666666666655532 1122 345555555556666666666666555543 222 34455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.++...|++++|...|+.+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC
Confidence 555555555555555555555443
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=8.1e-08 Score=62.99 Aligned_cols=95 Identities=9% Similarity=-0.075 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..+.+...+..+..++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 5567778889999999999999999875 667889999999999999999999999999999888899999999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 037499 170 RRLEDAWKVFDEMLKR 185 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~ 185 (262)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=8e-08 Score=78.39 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 55 DLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
..+...+.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334456677788888888888887752 4557778888888888888888888888887765 5566777888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhcCChhHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHG--CVVSRRLEDAWKVFD 180 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 180 (262)
.|++++|++.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888877766555566666555 777788888888777
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.82 E-value=1.4e-07 Score=76.57 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT---------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
...+..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..+++....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4445555555555555555555555554432 111 355666666666666666666666666666
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHH
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEAL 211 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 211 (262)
.+.+...|..+..+|...|++++|...|++..+... -+...+..+..++.+.++.+++.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666665421 23445555666666666665554
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.81 E-value=6.3e-09 Score=84.89 Aligned_cols=124 Identities=10% Similarity=0.008 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+.+...|..+..+|...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3344556778899999999999998875 566889999999999999999999999999998888889999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHH--HHhhCCHHHHHHHHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG--LCLELRVDEALKLKE 215 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 215 (262)
|++++|...|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999886322 34455555555 788899999999988
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.80 E-value=1.5e-07 Score=74.27 Aligned_cols=138 Identities=6% Similarity=-0.086 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
.|..+...+.+.|++++|++.|++..+.. +... .... .++..+.. +.+..+|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHH
Confidence 45666667777777777777777666510 0000 0000 00000011 22345566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499 133 LTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALK 212 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 212 (262)
.+.|++++|++.+++..+..+.+...|..+..+|...|++++|...|++..+... .+...+..+..++...++.+++.+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555566666666666666666666666666665421 244455555555555565555543
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.79 E-value=7.1e-07 Score=58.76 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---hhHHHHHHHH
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPD---ACSYNILMHG 165 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 165 (262)
.+...+...|++++|.+.|++..+.. +.+. ..+..+..++.+.|++++|...|+......+.+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455556666666666666665543 2222 355555566666666666666666665554433 4445555566
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 037499 166 CVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~ 185 (262)
+...|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665554
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.79 E-value=1.7e-07 Score=64.06 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----Chh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNV---QRT--VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DAC 157 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~ 157 (262)
++..+...+...|++++|++.+++..+..- .+. ..++..+...+...|++++|.+.+++...... . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444444445555555555544432210 000 12344444455555555555555544432211 1 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CchHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKR----RLQ-PTLVTFGTLIYGLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 218 (262)
.+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444455555555555555555444332 100 012234444445555555555555555544
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.79 E-value=2.7e-07 Score=74.92 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---------------EIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
....|..+...+.+.|++++|+..|++..+.. +.+ ..+|..+..+|.+.|++++|+..|++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45578888899999999999999999998753 223 5788889999999999999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH-HHHHHHH
Q 037499 115 SFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK-VFDEMLK 184 (262)
Q Consensus 115 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 184 (262)
+.. +.+..+|..+..+|...|++++|+..|++..+..+.+...+..+..++.+.++.+++.+ .++.|..
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876 66788899999999999999999999999998888778888999999988888877654 4454443
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.79 E-value=2.3e-07 Score=63.37 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-c
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRR----LQP-T 190 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~----~~~-~ 190 (262)
..++..+...+...|++++|+..+++...... .+ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34678888899999999999999988765433 22 2478889999999999999999999977631 111 1
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKP----DAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
...+..+...+...|++++|...+++..+...-.. ....+..+...|...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677788889999999999999998765421111 2456788888999999999999999987753
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.78 E-value=2.8e-07 Score=63.64 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 122 VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 122 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
...|..+..+|.+.|++++|+..++......+.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666666666666666666666666665566666666666666666666666666666654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.77 E-value=1.7e-07 Score=64.71 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------C--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDT--------R--------VVPEEIIFCNVISFYGRARLLEHALQVFDEM 113 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (262)
....+......+.+.|++++|+..|.+..... . -+.+..+|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 46678889999999999999999999988740 0 1234568889999999999999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh
Q 037499 114 SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA 156 (262)
Q Consensus 114 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (262)
.+.. +.+..+|..+..+|...|++++|...|++.....+.+.
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9876 66788999999999999999999999999988776555
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=1.3e-05 Score=61.78 Aligned_cols=202 Identities=10% Similarity=0.014 Sum_probs=148.4
Q ss_pred HHHHHHHHH---HHhcCChh-HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcC
Q 037499 52 LHYDLIITK---LGRAKMFD-EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL----------LEHALQVFDEMSSFN 117 (262)
Q Consensus 52 ~~~~~l~~~---~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 117 (262)
..|..+... ..+.|.++ +|+.++..+.... |-+..+|+.--.++...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344444433 33456655 8999999999743 3444555543333333332 678999999998876
Q ss_pred CCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCchHHH
Q 037499 118 VQRTVKSFNTLLNAMLTCG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR-LEDAWKVFDEMLKRRLQPTLVTF 194 (262)
Q Consensus 118 ~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~ 194 (262)
+-+..+|+.-..++...| .+++++.+++.+.+..+-|..+|+.-.-.....|. ++++++.++.+.+..+. |...|
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 678889988888888888 48999999999999999999999988888888888 58999999999987544 66777
Q ss_pred HHHHHHHHhh--------------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHH
Q 037499 195 GTLIYGLCLE--------------LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAV-----------GELSLALGF 249 (262)
Q Consensus 195 ~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~ 249 (262)
+.....+... +.++++++.+.+.... .+-|...|+.+-..+.+. +.++++++.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 7666665554 5688999999998874 244667776665555554 457889999
Q ss_pred HHHHHHcCCCCC
Q 037499 250 KEEMVRNKIEMD 261 (262)
Q Consensus 250 ~~~m~~~g~~pd 261 (262)
++++.+ +.||
T Consensus 261 ~~elle--~~pd 270 (331)
T 3dss_A 261 CKELQE--LEPE 270 (331)
T ss_dssp HHHHHH--HCTT
T ss_pred HHHHHh--hCcc
Confidence 999887 4565
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.75 E-value=3.1e-08 Score=64.53 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 150 (262)
.+..+..+|...|++++|++.|++..+.. +.+..++..+..++...|++++|+..|++...
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444332 22333444444444444444444444444433
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.75 E-value=3.1e-07 Score=72.36 Aligned_cols=138 Identities=11% Similarity=-0.037 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV 168 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (262)
.+..+...+.+.|++++|++.|++..+.- +... .... .+......+.+..+|..+..+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777777777777777766421 1100 0000 111112233567889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 037499 169 SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALG 248 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 248 (262)
.|++++|...+++..+... .+...+..+..+|...|++++|+..|++..+. .+-+...+..+..++...++.+++..
T Consensus 286 ~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998642 36778888999999999999999999999875 22366778888888888888777754
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.70 E-value=1.1e-07 Score=74.10 Aligned_cols=148 Identities=6% Similarity=-0.052 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
...|..+...+.+.|++++|+..|++..+. .|+... +...++..++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 344555666666667777777777776653 233221 11122222222111 0136777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH-HHhhCCHHH
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG-LCLELRVDE 209 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~ 209 (262)
+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+... -+...+..+... ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877777778888888888888888888888888776422 133444444433 234456677
Q ss_pred HHHHHHHHHH
Q 037499 210 ALKLKEDMMR 219 (262)
Q Consensus 210 a~~~~~~~~~ 219 (262)
+.++|.++..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 7777877764
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.69 E-value=6.5e-08 Score=62.95 Aligned_cols=86 Identities=9% Similarity=0.044 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 100 ARLLEHALQVFDEMSSFN--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|+..|++..+..+.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555666666555542 122334555555555555566666665555555555555555555555555555555555
Q ss_pred HHHHHHHC
Q 037499 178 VFDEMLKR 185 (262)
Q Consensus 178 ~~~~m~~~ 185 (262)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.60 E-value=2.7e-07 Score=71.90 Aligned_cols=148 Identities=10% Similarity=-0.061 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
...+..+...+.+.|++++|+..|++..+.. |+... +...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4456677788888899999999998877652 43221 223344444443321 24788999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH-HHhcCChh
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVFASLIKG-LCAVGELS 244 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 244 (262)
.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+ +.|+ ...+..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 23678889999999999999999999999874 3454 4455555544 33456778
Q ss_pred HHHHHHHHHHHc
Q 037499 245 LALGFKEEMVRN 256 (262)
Q Consensus 245 ~a~~~~~~m~~~ 256 (262)
++..+|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888899888753
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=1.6e-06 Score=59.00 Aligned_cols=93 Identities=11% Similarity=-0.050 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRT-------------VKSFNTLLNAMLTCGKIDRMTDLFQIMEKY----- 151 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 151 (262)
+......+.+.|++++|++.|++..+.. |+ ...|..+..++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4445555556666666666666655432 22 125666666666666666666666666555
Q ss_pred --CCCChhHH----HHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 152 --VSPDACSY----NILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 152 --~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.+.+...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44555555 6666666666666666666666554
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=1.8e-05 Score=65.96 Aligned_cols=173 Identities=8% Similarity=-0.011 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL----------LEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
...++|++.++++.+.. +-+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 44568899999999863 4556667766666666666 899999999999876 6788899998888999
Q ss_pred cC--CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-------
Q 037499 135 CG--KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE------- 204 (262)
Q Consensus 135 ~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 204 (262)
.| +++++++.++++.+..+.+..+|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 99 7799999999999999999999999888888999 899999999999887543 667777766666553
Q ss_pred -------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499 205 -------LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243 (262)
Q Consensus 205 -------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 243 (262)
+.++++++.+++.... .+-|...|..+-..+.+.++.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCc
Confidence 6689999999998864 233667777777677766653
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.49 E-value=5e-06 Score=56.58 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-----c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----
Q 037499 51 LLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP-----E-----EIIFCNVISFYGRARLLEHALQVFDEMSSF---- 116 (262)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 116 (262)
...+......+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 45567788889999999999999999987531100 2 338999999999999999999999999886
Q ss_pred ---CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 117 ---NVQRTVKSF----NTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 117 ---~~~~~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
. +-+...| .....++...|++++|+..|++..+..+
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5 4456788 8999999999999999999999876544
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.5e-06 Score=55.41 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
..+..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 334444444445555555555555444433 33344444444455555555555555554444433
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.48 E-value=4e-06 Score=51.30 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
.+..+...+...|++++|++.|++..+.. +.+..++..+..++...|++++|...|++.....+.+...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33444444444444444444444444332 2233344444444444444444444444444433333333333333
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.48 E-value=1.8e-06 Score=55.71 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 69 EVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
.|+..|++..+. -+.+...+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555543 23445556666666666666666666666666554 344555666666666666666666666665
Q ss_pred Hhc
Q 037499 149 EKY 151 (262)
Q Consensus 149 ~~~ 151 (262)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 195
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=3.1e-05 Score=63.42 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=137.8
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 037499 23 KLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL 102 (262)
Q Consensus 23 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (262)
+++..+|+++. ...+.+...|...+..+.+.|+++.|..++++.... |.+...+.. |+....
T Consensus 196 ~Rv~~~ye~al-----------~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e 257 (493)
T 2uy1_A 196 SRMHFIHNYIL-----------DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMD 257 (493)
T ss_dssp HHHHHHHHHHH-----------HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTT
T ss_pred HHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcc
Confidence 45667777763 344557889999999999999999999999999974 444333332 222211
Q ss_pred HHHHHHHHHHHhhcC------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 103 LEHALQVFDEMSSFN------------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
.++. ++.+.+.- ......+|...+..+.+.+..+.|..+|+.. .....+...|...+..-...+
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC
Confidence 1111 22222110 0112345777777777788899999999999 332244455543333333333
Q ss_pred -ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 037499 171 -RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGF 249 (262)
Q Consensus 171 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 249 (262)
+.+.|..+|+...+.- +-+...+...+......|+.+.|..+|+++. .....|...+..=...|+.+.+..+
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6999999999998863 2234456667777788999999999998872 2567788888777788999999998
Q ss_pred HHHHHH
Q 037499 250 KEEMVR 255 (262)
Q Consensus 250 ~~~m~~ 255 (262)
+++..+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=7.5e-06 Score=66.72 Aligned_cols=125 Identities=5% Similarity=-0.138 Sum_probs=84.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--C-ChhHHH
Q 037499 96 FYGRARLLEHALQVFDEMSSF-----N--VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--P-DACSYN 160 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~-~~~~~~ 160 (262)
.+...|++++|+.++++..+. | .+....+++.|..+|...|++++|+.++++.... |+ | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888776542 1 1112356788888888888888888888776432 22 2 245678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----CCC-CCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLK-----RRL-QPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.+...|...|++++|..++++..+ .|. .|+ ..+...+-.++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877654 232 222 234455556677778888888888887654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.43 E-value=4.4e-06 Score=53.85 Aligned_cols=80 Identities=9% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.|++.|++..+.. +.+...+..+..+|...|++++|+..|++.....+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566677766654 456677777777888888888888888887777666677777778888888888888888777765
Q ss_pred C
Q 037499 185 R 185 (262)
Q Consensus 185 ~ 185 (262)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.43 E-value=2.5e-06 Score=69.47 Aligned_cols=125 Identities=9% Similarity=-0.034 Sum_probs=96.3
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCC----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C--CCCChhhHHH
Q 037499 61 LGRAKMFDEVQQILHQLKHDT--RVV----PEEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N--VQRTVKSFNT 127 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 127 (262)
+...|++++|+.++++..+.. -+. ....+++.|..+|...|++++|+.++++..+. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 557899999999998886531 122 23568899999999999999999999887642 2 1123467899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKY-----VS--PD-ACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
|...|...|++++|+.++++.... |+ |+ ..+.+.+..++...+.+++|+.+|+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877542 33 32 345567778888899999999999998864
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=1.7e-05 Score=66.09 Aligned_cols=174 Identities=6% Similarity=-0.117 Sum_probs=141.4
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCccHH
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKM----------FDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
....++|++.++.+.. -.+-+..+|+.--.++...++ ++++++.++.+.+.. +-+..
T Consensus 42 ~~~~eeal~~~~~~l~-----------~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~ 108 (567)
T 1dce_A 42 GELDESVLELTSQILG-----------ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG 108 (567)
T ss_dssp TCCSHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred CCCCHHHHHHHHHHHH-----------HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHH
Confidence 3444578999988833 445577889888888888877 999999999999864 66778
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 037499 89 IFCNVISFYGRAR--LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVSPDACSYNILMHG 165 (262)
Q Consensus 89 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 165 (262)
+|+.-.-++.+.+ +++++++.++++.+.. +.+..+|+.-..++.+.| .++++++.+.++.+..+.|...|+.....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence 8888888888889 7799999999999987 778899999888888999 89999999999999888999999988877
Q ss_pred HHhc--------------CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 166 CVVS--------------RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 166 ~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
+.+. +.++++.+.+++...... -|...|.-+-..+.+.++.
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence 7663 457889999999888643 3667777776666666653
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.40 E-value=3.5e-05 Score=51.51 Aligned_cols=110 Identities=13% Similarity=0.006 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHH
Q 037499 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAW 176 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 176 (262)
+++++|+++|++..+.| .+... +...|...+..++|++.|++..+. .+...+..+...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45677777777777666 33322 555565666666677777766654 455566666666666 66777777
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 037499 177 KVFDEMLKRRLQPTLVTFGTLIYGLCL----ELRVDEALKLKEDMMRV 220 (262)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~ 220 (262)
..|++..+.| +...+..|...|.. .+++++|.++|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 7777776654 44555556666666 56777777777666553
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.38 E-value=1.7e-06 Score=58.73 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCchHHHH
Q 037499 138 IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-----------RLEDAWKVFDEMLKRRLQPTLVTFG 195 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (262)
+++|+..|++..+..+.+...|..+..+|...| ++++|...|++..+. .|+...|.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 346666666666655555556666666665543 556666666665553 34444333
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.36 E-value=5.2e-06 Score=52.16 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
..+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|...|++++|++.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444444444332 223334444444444444444444444443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=8.2e-07 Score=56.72 Aligned_cols=93 Identities=12% Similarity=0.013 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC------hh
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT------VK 123 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~ 123 (262)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.|++..+.. +.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHH
Confidence 56788899999999999999999999999853 5678889999999999999999999999998764 333 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLF 145 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~ 145 (262)
.+..+..++...|+.+.|+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 5555556666666555554433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.31 E-value=1.6e-05 Score=48.51 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+...|..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|.+.|++..+.. +.+..++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 56788889999999999999999999998853 5567889999999999999999999999998875 55667777777
Q ss_pred HHHHhc
Q 037499 130 NAMLTC 135 (262)
Q Consensus 130 ~~~~~~ 135 (262)
.++...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=5.9e-05 Score=50.38 Aligned_cols=111 Identities=10% Similarity=-0.025 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT----CGKIDR 140 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 140 (262)
+++++|++.|++..+. | .+... |...|...+.+++|+++|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4567777777777664 3 23332 5566666666777777777777654 44566666666666 667777
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 037499 141 MTDLFQIMEKYVSPDACSYNILMHGCVV----SRRLEDAWKVFDEMLKRR 186 (262)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 186 (262)
|++.|++..+. .++..+..+...|.. .+++++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 445566666667766 677777777777777665
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.25 E-value=4.3e-05 Score=62.58 Aligned_cols=191 Identities=12% Similarity=-0.027 Sum_probs=129.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT- 81 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 81 (262)
|..+..|...+..+.+.|++++|.++|++... . +.+...|.. |+...+.++. ++.+.+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-----------~-P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-----------M-SDGMFLSLY----YGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H-CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------C-CCcHHHHHH----HHhhcchhHH---HHHHHHHHH
Confidence 44556678888888999999999999999843 3 334334432 2222222222 22222210
Q ss_pred -------CC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 037499 82 -------RV---VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG-KIDRMTDLFQIMEK 150 (262)
Q Consensus 82 -------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 150 (262)
+. .....+|...+....+.++.+.|.++|++. +.. ..+...|......-...+ +.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 00 112345777777777888999999999999 321 223444543333323333 69999999999988
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 151 YVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..+.++..|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.+++++..+
T Consensus 349 ~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 765556677778888889999999999999973 2577888888777788999999999988875
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.24 E-value=1.2e-05 Score=50.45 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=50.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 119 QRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
+.+...+..+..+|...|++++|+..|++..+..+.+...|..+..+|...|++++|...|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667777777888888888888888888777776777777888888888888888888777665
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.23 E-value=1e-05 Score=54.90 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=81.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 134 TCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL----------EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
+.+.+++|++.++...+..+.+...|..+..++...+++ ++|+..|++..+.... +..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 445677777777777777777777777777777776654 5999999999987433 56788889999987
Q ss_pred hC-----------CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 204 EL-----------RVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 204 ~g-----------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
.| ++++|++.|++..+. .|+...|...+... ++|-++.-.+-..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 74 899999999999865 78877776555443 3445544444433
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.12 E-value=0.00059 Score=59.25 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=106.2
Q ss_pred HHHHhhcCChHHHHH-hhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 13 ASLLRLQKDPKLALQ-LFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
.......+++++|.+ ++..+. +......++..+.+.|..+.|+++.+.- ...
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~----------------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~--- 658 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE----------------GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQK--- 658 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC----------------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHH---
T ss_pred HhHHHHhCCHHHHHHHHHhcCC----------------chHHHHHHHHHHHhCCChHHheecCCCc--------chh---
Confidence 344456889999988 776551 1333477888888899999988765321 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499 92 NVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171 (262)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 171 (262)
.......|+++.|+++.+.+ .+...|..+...+.+.|+++.|.++|.++.. |..+...|...|+
T Consensus 659 --f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 659 --FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNN 722 (814)
T ss_dssp --HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTC
T ss_pred --eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCC
Confidence 33456789999999886443 3567899999999999999999999998865 4555666666777
Q ss_pred hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.+...++.+.....| -++....+|.+.|++++|++++.++
T Consensus 723 ~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 723 KEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777666666555543 1233344455566777776666554
No 210
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.91 E-value=0.0015 Score=42.58 Aligned_cols=140 Identities=12% Similarity=0.111 Sum_probs=87.4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWK 177 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 177 (262)
.-.|.+++..++..+..+. .+..-||-++--....-+-+-..++++.+-+. .|.. .+|++.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--FDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--FDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--SCGG----------GCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh--cCcH----------hhhcHHHHHH
Confidence 3457777777777777653 34445555555555555555555555555432 3322 3444444444
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNK 257 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 257 (262)
.+-.+-. +...+...+.....+|+-++-.+++..+.. ..+|++.....+..+|.+.|+..+|.+++.+..++|
T Consensus 83 C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4433221 445566677777788888888888777543 456777777788888888888888888888888877
Q ss_pred CC
Q 037499 258 IE 259 (262)
Q Consensus 258 ~~ 259 (262)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 63
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.85 E-value=0.0036 Score=48.64 Aligned_cols=142 Identities=8% Similarity=0.035 Sum_probs=91.0
Q ss_pred CccHHHHHHHHHHH--HhcC---CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh---cC-----CHHHHHHHHHHHH-
Q 037499 84 VPEEIIFCNVISFY--GRAR---LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT---CG-----KIDRMTDLFQIME- 149 (262)
Q Consensus 84 ~~~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~- 149 (262)
+.+...|...+++. ...+ +..+|..+|++..+.. |-....|..+..+|.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34445555555443 3333 3478888888888764 3334555544444431 11 1111111222211
Q ss_pred -hcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499 150 -KYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 150 -~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 228 (262)
..++.++.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcC
Confidence 2234778888888777777899999999999999875 67777777788888899999999999988764 67776
Q ss_pred HHH
Q 037499 229 VFA 231 (262)
Q Consensus 229 ~~~ 231 (262)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=0.00039 Score=42.99 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=26.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 59 TKLGRAKMFDEVQQILHQLKHDTRVVPEEI-IFCNVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
..+.+.|++++|+..+++..+.. +.+.. .+..+..+|...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444455555555555544431 22333 4444444444555555555555544443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.0018 Score=50.34 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=96.8
Q ss_pred CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc---C-C----hhHHHHHHHHHHHC
Q 037499 119 QRTVKSFNTLLNAML--TCG---KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS---R-R----LEDAWKVFDEMLKR 185 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~----~~~a~~~~~~m~~~ 185 (262)
+.+..+|...+.+.. ..+ ...+|..+|++..+..|.....|..+..+|... + . .......++.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 667888888887654 333 458999999999998887777776655555311 1 1 11111122221111
Q ss_pred -CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037499 186 -RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRN 256 (262)
Q Consensus 186 -~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 256 (262)
..+.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|.+.+++....
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22456778888877777789999999999999986 488888888888999999999999999988763
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=0.00046 Score=42.68 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTVK-SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.+.+.|++++|++.|++..+.. +.+.. .+..+..+|...|++++|++.|++.....+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3444444444444444444432 22333 444444444444444444444444444433
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.67 E-value=0.00038 Score=55.87 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGKIDRMTDLFQIMEKY-----VS--P-DACSYNILMHGCVVSRRLEDAWKVFDEML 183 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 183 (262)
.+++.+..+|...|++++|+.++++.... |+ | ...+++.+...|...|++++|..++++..
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34555555555555555555555544321 11 1 23345555666666666666666555544
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.65 E-value=0.00024 Score=56.95 Aligned_cols=84 Identities=8% Similarity=-0.073 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHHhcC--CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----C-CCC-ChhhHHHHHHH
Q 037499 65 KMFDEVQQILHQLKHDT--RVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSF-----N-VQR-TVKSFNTLLNA 131 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~ll~~ 131 (262)
|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|+.++++..+. | -.| ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45555665555544310 1111 1344555555555556665555555554321 1 011 12335555555
Q ss_pred HHhcCCHHHHHHHHHHH
Q 037499 132 MLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~ 148 (262)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555444
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=0.00029 Score=56.48 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhc-----CC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCc-hHHHHHHHHH
Q 037499 136 GKIDRMTDLFQIMEKY-----VS--P-DACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----R-LQPT-LVTFGTLIYG 200 (262)
Q Consensus 136 g~~~~a~~~~~~~~~~-----~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~~~~li~~ 200 (262)
|++++|+.++++..+. ++ | ...+++.+..+|...|++++|..++++..+. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554332 11 1 2345666777777777777777777665531 2 1222 3456667777
Q ss_pred HHhhCCHHHHHHHHHHHHH
Q 037499 201 LCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~ 219 (262)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777766544
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.63 E-value=0.0013 Score=40.39 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHHHH
Q 037499 98 GRARLLEHALQVFDE 112 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~ 112 (262)
.+.|++++|+..|++
T Consensus 54 ~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 54 FISFRFQEAIDTWVL 68 (93)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 333333333333333
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.00066 Score=54.48 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-----C---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCc-hHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYV-----S---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-----R-LQPT-LVT 193 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~-~~~ 193 (262)
+..+.+.|++++|+.++++..+.. + ....+++.+...|...|++++|+.++++.... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999887542 2 22467899999999999999999999987742 2 2333 457
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
++.|...|...|++++|+.++++..+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 888999999999999999999887543
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.55 E-value=0.0019 Score=40.57 Aligned_cols=63 Identities=11% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFN------VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
.+..+...+.+.+++..|..+|+...+.- -.+...++..+..++.+.|++++|+..+++....
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34444444444555555555444443210 0122333444444444444444444444444433
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.45 E-value=0.0028 Score=38.88 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 139 DRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
++|..++++.....+.+......+...+.+.|++++|...|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444444
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.41 E-value=0.0035 Score=39.32 Aligned_cols=75 Identities=5% Similarity=-0.048 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDT-----RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (262)
.+..-+..+...+.+.+++..|...|+...+.. .-.+...++..+..++.+.|+++.|+..+++..+.. |.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~ 81 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQR 81 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHH
Confidence 366777889999999999999999999987642 113467789999999999999999999999998764 33433
Q ss_pred h
Q 037499 124 S 124 (262)
Q Consensus 124 ~ 124 (262)
+
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.014 Score=40.22 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 176 (262)
..+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.++..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHH
Confidence 34566666666665544 2345666666666666666666666666554 455555555566666555
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
++-+.....| -++.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555444433 2333444455567777776666443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.38 E-value=0.0053 Score=41.22 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChhHHHHHH
Q 037499 105 HALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG---KIDRMTDLFQIMEKYVSP--DACSYNILMHGCVVSRRLEDAWKVF 179 (262)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 179 (262)
.+.+-|.+..+.| +++..+...+..++++++ +.++++.+|+...+...| ....+-.+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3344444444444 345555555555555555 344555555555544311 2334444444555555555555555
Q ss_pred HHHHH
Q 037499 180 DEMLK 184 (262)
Q Consensus 180 ~~m~~ 184 (262)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55555
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.38 E-value=0.011 Score=44.20 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhc-CCh
Q 037499 103 LEHALQVFDEMSSFNVQRT---VKSFNTLLNAMLTC-----GKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVS-RRL 172 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-g~~ 172 (262)
...|...+++..+.. |+ -..|..+...|.+. |+.++|.+.|++..+..+ .+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 345556666666543 33 44666666666663 677777777777766665 3466666666666663 667
Q ss_pred hHHHHHHHHHHHCCCC
Q 037499 173 EDAWKVFDEMLKRRLQ 188 (262)
Q Consensus 173 ~~a~~~~~~m~~~~~~ 188 (262)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.017 Score=39.81 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=46.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 037499 60 KLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKID 139 (262)
Q Consensus 60 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 139 (262)
...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 344455555555554443 1344455555555555555555555555442 233334444445544
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037499 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFD 180 (262)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 180 (262)
+..++-+.....+. ++.....+.-.|+++++.++|.
T Consensus 78 ~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 78 KLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 44443333332211 2333334444555555555543
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.26 E-value=0.02 Score=49.65 Aligned_cols=131 Identities=11% Similarity=0.095 Sum_probs=88.0
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII 89 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (262)
..++..+.+.|..++|+++.+.- . .-.......|+++.|.++.+.+ .+...
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~-----------------~-----~~f~~~l~~~~~~~A~~~~~~~-------~~~~~ 683 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ-----------------D-----QKFELALKVGQLTLARDLLTDE-------SAEMK 683 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH-----------------H-----HHHHHHHHHTCHHHHHHHHTTC-------CCHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc-----------------c-----hheehhhhcCCHHHHHHHHHhh-------CcHhH
Confidence 56777888899999999877543 1 1134567789999999986433 45678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVS 169 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (262)
|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.....+. ++....+|.+.
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-----~~~A~~~~~~~ 749 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-----FNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----hHHHHHHHHHc
Confidence 99999999999999999999998764 34455555556666665555555444322 23333445556
Q ss_pred CChhHHHHHHHHHH
Q 037499 170 RRLEDAWKVFDEML 183 (262)
Q Consensus 170 g~~~~a~~~~~~m~ 183 (262)
|++++|.+++.++.
T Consensus 750 g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 750 GDIQGAKDLLIKSQ 763 (814)
T ss_dssp TCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcC
Confidence 66666666655543
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.23 E-value=0.0084 Score=40.25 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCC--chHHHHHHHHHHHhhCCHHHHH
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR---RLEDAWKVFDEMLKRRLQP--TLVTFGTLIYGLCLELRVDEAL 211 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 211 (262)
....+.+.|.+....++++..+...+.-++++.+ +.+++..+|+...+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455667777766667788888888889999988 6669999999988874 23 3445555666889999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 037499 212 KLKEDMMRVYNVKPD 226 (262)
Q Consensus 212 ~~~~~~~~~~~~~p~ 226 (262)
+.++.+.+. .|+
T Consensus 92 ~y~~~lL~i---eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT---EPQ 103 (152)
T ss_dssp HHHHHHHHH---CTT
T ss_pred HHHHHHHhc---CCC
Confidence 999999865 664
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.08 E-value=0.0096 Score=44.57 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCC--CChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-CCHHH
Q 037499 138 IDRMTDLFQIMEKYVS--PDACSYNILMHGCVV-----SRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-LRVDE 209 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~ 209 (262)
...|...+++..+..+ .+...|..+...|.+ .|+.++|.+.|++..+.+..-+..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 5677888888888777 467899999999999 499999999999999964332477888888888885 99999
Q ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037499 210 ALKLKEDMMRVYNVK--PDAQVFASLIKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 210 a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 254 (262)
+.+.+++.... ... |+....+.+- -.+|..++++..
T Consensus 259 a~~~L~kAL~a-~p~~~P~~~lan~~~--------q~eA~~LL~~~~ 296 (301)
T 3u64_A 259 FDEALDRALAI-DPESVPHNKLLVILS--------QKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHC-CGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred HHHHHHHHHcC-CCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence 99999999875 333 5544444332 345556555543
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.95 E-value=0.039 Score=36.77 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCcc
Q 037499 49 YNLLHYDLIITKLGRAKMF------DEVQQILHQLKHDTRVVPE 86 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~ 86 (262)
.|..+|-..+...-+.|+. ++.+++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCcc
Confidence 3677777777777777777 7777777777663 5665
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.80 E-value=0.034 Score=37.06 Aligned_cols=103 Identities=6% Similarity=0.025 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHHhc
Q 037499 85 PEEIIFCNVISFYGRARLL------EHALQVFDEMSSFNVQRTVK-SFNTLLNA------MLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~~------~~~~g~~~~a~~~~~~~~~~ 151 (262)
-|..+|-..+....+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455566666666666666 6666777766653 344321 11111111 11234555555555555443
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037499 152 VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQ 188 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 188 (262)
...-...|......-.+.|++.+|.+++.+....+..
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2211445555555555555555555555555554433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.63 E-value=0.023 Score=36.75 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 037499 200 GLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~ 218 (262)
++.+.|++++|.+.++.+.
T Consensus 83 g~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444444444444444444
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.61 E-value=0.048 Score=35.23 Aligned_cols=90 Identities=12% Similarity=-0.047 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--ChhHHHHHHHHHHhc
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR---MTDLFQIMEKYVSP--DACSYNILMHGCVVS 169 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 169 (262)
...........+.+-|.+....| .++..+-..+..++.++..... ++.+++.+...+.| .....-.+.-++.+.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 33344455666777777666666 4777777778888888877665 88888887776532 344555677788899
Q ss_pred CChhHHHHHHHHHHHC
Q 037499 170 RRLEDAWKVFDEMLKR 185 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~ 185 (262)
|++++|.+.++.+.+.
T Consensus 88 g~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQT 103 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999998885
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.44 E-value=1.4e-05 Score=63.63 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=133.5
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRV 83 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (262)
..|..|..|+.+....+.+.+|++.|-+.. |+..|..++..+.+.|.+++-++.+...++.
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~----------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--- 112 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 112 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS----------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC----------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence 467889999999999999999999887762 5667888999999999999999999887764
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV----------- 152 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------- 152 (262)
.-++.+=+.|+-+|++.++..+..+++ ..||..-...+.+-|...|.++.|.-+|..+..-.
T Consensus 113 ~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~ 185 (624)
T 3lvg_A 113 ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE 185 (624)
T ss_dssp CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 233444568899999999865433322 24666666677777777777777776665543211
Q ss_pred ---------C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcC
Q 037499 153 ---------S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYN 222 (262)
Q Consensus 153 ---------~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 222 (262)
. .++.||-.+-.+|...+.+.-|.-.--.+.-. ..-...++..|-..|.+++-+.+++.-.. -
T Consensus 186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg--l 258 (624)
T 3lvg_A 186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG--L 258 (624)
T ss_dssp GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT--S
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC--C
Confidence 1 57788888888888777776665554333321 11122344455555666665555555431 1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 037499 223 VKPDAQVFASLIKGLCA 239 (262)
Q Consensus 223 ~~p~~~~~~~l~~~~~~ 239 (262)
-.....+|+-|.-.|++
T Consensus 259 ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 259 ERAHMGMFTELAILYSK 275 (624)
T ss_dssp TTCCHHHHHHHHHHHHS
T ss_pred CchhHHHHHHHHHHHHh
Confidence 12344445544444444
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.068 Score=45.85 Aligned_cols=126 Identities=14% Similarity=0.042 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhcCCh-hHHHHHHHHHHHC------CCCC-ch----
Q 037499 126 NTLLNAMLTCGK-IDRMTDLFQIMEKYVSPDACSY-NILMHGCVVSRRL-EDAWKVFDEMLKR------RLQP-TL---- 191 (262)
Q Consensus 126 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~-~~a~~~~~~m~~~------~~~~-~~---- 191 (262)
..++..+...|+ .+.|..+|+++....+.....+ ..++..+.+.++- -+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555666 5779999998887655333333 3334444343322 2355555444321 1111 11
Q ss_pred ------HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 192 ------VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 192 ------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
.....=...+...|+++.|+++-++.... .+-+..+|..|..+|...|+++.|+-.++-+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 01111134456789999999999998863 2335789999999999999999999888776
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.16 E-value=0.14 Score=33.55 Aligned_cols=138 Identities=13% Similarity=0.067 Sum_probs=74.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHH
Q 037499 61 LGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDR 140 (262)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 140 (262)
+.-.|.+++..++..+..... +..-+|-+|--....-+-+-..++++.+-+. -|. ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHH
Confidence 344699999999999988754 3333444444444455666666666655432 121 12233333
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 141 MTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
....+-.+. .+...+...+......|..++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.+..+.
T Consensus 80 Vi~C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333322221 23344455555556666666666666654332 3455555556666666666666666666666554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.078 Score=45.50 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCccHHH-H-HHHHHHHHhcCC-HHHHHHHHHHHhhc------CCCCC-
Q 037499 53 HYDLIITKLGRAKM-FDEVQQILHQLKHDTRVVPEEII-F-CNVISFYGRARL-LEHALQVFDEMSSF------NVQRT- 121 (262)
Q Consensus 53 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~- 121 (262)
.-..++..+...++ ++.|+.+|+++.+.. |...+ + ..++..+...++ --+|.+++.+..+. ..++.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~---p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD---PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 33556666666776 588999999998863 43332 2 334444434332 23556555554321 11111
Q ss_pred hh----------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 122 VK----------SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEM 182 (262)
Q Consensus 122 ~~----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 182 (262)
.. ....=..-+...|+++-|+++-++.....|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 10 11111334667899999999999999888888899999999999999999999999887
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=96.08 E-value=0.8 Score=41.69 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=120.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---------------
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR--------------- 120 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 120 (262)
.++..+...+.++.+.++.... +.++.....+..+|...|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 4556677778887777655433 23444556678899999999999999987531 1100
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037499 121 --------TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRL 187 (262)
Q Consensus 121 --------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 187 (262)
-..-|.-++..+.+.+.++.+.++-....+... .+ ...|..+..++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112366778888889999998888776655433 22 23688999999999999999999988876544
Q ss_pred CCchHHHHHHHHHHHhhCCH------------HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHH-HHHH
Q 037499 188 QPTLVTFGTLIYGLCLELRV------------DEALKLKEDMMRVY-NVKPDAQVFASLIKGLCAVGELSLALGF-KEEM 253 (262)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~------------~~a~~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m 253 (262)
+ ...+..|+...|..|.. ++..+++....+.. .+...+.-|..|-.-+...|++.+|-++ |+..
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3 45677777777766554 34444443322110 1111112344444445667777766554 4444
Q ss_pred H
Q 037499 254 V 254 (262)
Q Consensus 254 ~ 254 (262)
.
T Consensus 1048 ~ 1048 (1139)
T 4fhn_B 1048 S 1048 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.01 E-value=0.4 Score=42.20 Aligned_cols=193 Identities=12% Similarity=0.003 Sum_probs=99.5
Q ss_pred HhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-C-----CccHHH
Q 037499 16 LRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR-V-----VPEEII 89 (262)
Q Consensus 16 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-----~~~~~~ 89 (262)
....|+.++++.++........ ...+....-..+.-+....|..++++.++........ + .+....
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~--------s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSR--------ASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSC--------CSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccC--------CCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHH
Confidence 4568888999999988744210 1112233333444455566666678887777665321 0 011111
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037499 90 FCNVISFYGRARL-LEHALQVFDEMSSFNVQRTVK--SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGC 166 (262)
Q Consensus 90 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 166 (262)
-..+.-++.-.|. -+++.+.+..+.... ..... +--+|...+.-.|+-+....++..+.+....+..-...+.-++
T Consensus 456 gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 1222222222232 245555555555422 11111 1223334455667777777777766554322233333444455
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCchHHHH---HHHHHHHhhCCHHHHHHHHHHHHH
Q 037499 167 VVSRRLEDAWKVFDEMLKRRLQPTLVTFG---TLIYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~ 219 (262)
.-.|+.+.+..+++.+.... .| ..-|. ++.-+|+..|+.....+++..+..
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 57788888888888777641 22 22232 233456677787666667777654
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.91 E-value=0.13 Score=31.60 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
+.-+..+-++.+......|++.+..+.+++|.+.+++..|+++|+.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666677777777788888888888888888888888888888766433 33445666653
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.84 E-value=0.067 Score=42.28 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHH----hcCCCCCHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMR----VYNVKPDAQV 229 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 229 (262)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+++.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334455555566666555555555432 23455555566666666666666555555432 2355555544
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.76 E-value=0.32 Score=44.27 Aligned_cols=178 Identities=14% Similarity=0.118 Sum_probs=107.7
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCC------------CCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQP------------LKPFRYNLLHYDLIITKLGRAKMFDEVQ 71 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 71 (262)
.++.+-..++.++...|++++|.+.|++....-....... ......-..-|..++..+.+.+.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444557788999999999999999998733211000000 0000112234677888888999999999
Q ss_pred HHHHHHHhcCCCC-cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-----------
Q 037499 72 QILHQLKHDTRVV-PE--EIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK----------- 137 (262)
Q Consensus 72 ~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------- 137 (262)
++-+...+..+-. ++ ...|..+.+.+...|++++|...+-.+..... -......|+..++..|.
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~g 997 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPT 997 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTS
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCcc
Confidence 8887776643211 11 22578889999999999999999988876532 34455666666665544
Q ss_pred -HHHHHHHHHHH-Hhc-CC-CChhHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 037499 138 -IDRMTDLFQIM-EKY-VS-PDACSYNILMHGCVVSRRLEDAWK-VFDEML 183 (262)
Q Consensus 138 -~~~a~~~~~~~-~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 183 (262)
.+++.+++..- +.. .+ ..+.-|..|-..+...|++.+|-. +|+.+.
T Consensus 998 l~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 998 LRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 44555555432 222 11 222345555566667777765443 444443
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.72 E-value=0.56 Score=36.98 Aligned_cols=169 Identities=10% Similarity=-0.008 Sum_probs=107.3
Q ss_pred HHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhH----HHHHHHHHHhcCCC
Q 037499 9 PFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAK-MFDE----VQQILHQLKHDTRV 83 (262)
Q Consensus 9 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~----a~~~~~~~~~~~~~ 83 (262)
...|+..|.+.|+.++..+++...++--. .-+..-....-..++..+.... ..+. ..+.+++...+...
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~ 95 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLS------SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRT 95 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGG------GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998854311 0111123445666777776643 3333 44444444443211
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC
Q 037499 84 VPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQR-----TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV---SPD 155 (262)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~ 155 (262)
-....+=..++..|...|++.+|.+++.++.+.--.. -..+|..-+..|...+++.++...+....... .++
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 1112233468899999999999999998887531111 13456666788899999999999998775432 233
Q ss_pred hhHHH----HHHHHHH-hcCChhHHHHHHHHHH
Q 037499 156 ACSYN----ILMHGCV-VSRRLEDAWKVFDEML 183 (262)
Q Consensus 156 ~~~~~----~l~~~~~-~~g~~~~a~~~~~~m~ 183 (262)
+.... .-...+. ..++|..|...|-+..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33332 2234455 7899999988887764
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.51 E-value=0.12 Score=40.85 Aligned_cols=57 Identities=4% Similarity=-0.021 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 91 CNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIM 148 (262)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 148 (262)
..++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334555555666666666665555443 445556666666666666666666666554
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.04 E-value=0.09 Score=35.68 Aligned_cols=67 Identities=4% Similarity=-0.221 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 4 AKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYN-------LLHYDLIITKLGRAKMFDEVQQILHQ 76 (262)
Q Consensus 4 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~ 76 (262)
.+...+..-+..+...|.++.|+-+...+... ....++ ..++..+..++...+++.+|...|++
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl---------~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTL---------SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------hcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34456677788889999999999888775332 112222 23667788899999999999999999
Q ss_pred HHh
Q 037499 77 LKH 79 (262)
Q Consensus 77 ~~~ 79 (262)
..+
T Consensus 89 ALq 91 (167)
T 3ffl_A 89 ALQ 91 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.00 E-value=0.32 Score=31.64 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 037499 172 LEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK 235 (262)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 235 (262)
.-+..+-++.+...++.|++.+....+++|.+.+++..|+++|+-+..+. .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33456666667677788888888888888888888888888888887643 333456666654
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=1.2 Score=35.96 Aligned_cols=197 Identities=14% Similarity=0.111 Sum_probs=124.3
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHH--HHHHHHH
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEII--FCNVISF 96 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~ 96 (262)
.|+++.|++.+-.+.+... ..............++..|...++++...+.+..+.+..|..+...+ ...++..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r-----~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTR-----QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHS-----SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhh-----hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3778888887744422100 01244556777888999999999999999988888776554443322 2223333
Q ss_pred HHhcCCHHH--HHHHHHHHhh--cC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----ChhHHHHH
Q 037499 97 YGRARLLEH--ALQVFDEMSS--FN-VQR---TVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS--P----DACSYNIL 162 (262)
Q Consensus 97 ~~~~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~----~~~~~~~l 162 (262)
.......+. -..+.+.+.. .| +-. .......|...|...|++.+|.+++..+..... . -...+...
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 333443332 2222222211 11 111 112345678889999999999999998864322 1 14567788
Q ss_pred HHHHHhcCChhHHHHHHHHHHH----CCCCCc--hHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLK----RRLQPT--LVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
++.|...+++..|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++...
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8999999999999999988753 222232 234566777788889999988888877654
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.77 E-value=1.6 Score=38.64 Aligned_cols=158 Identities=9% Similarity=0.044 Sum_probs=96.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhcCCCCChhhH--HHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVIS--FYGRARLLEHALQVFDEMSSFNVQRTVKSF--NTLLNA 131 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~ 131 (262)
++...+...|+-+....++..+.+.. +..+...+.. ++.-.|+.+.+..+.+.+.... .|...-- .++.-+
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglA 569 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 34445667788888888888777631 2333333333 3446788888888888887642 2322222 234456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH-HHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV-DEA 210 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a 210 (262)
|+..|+.....+++..+......+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++
T Consensus 570 yaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred hcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 7788898877778888876644444444444555556777777888887776653 34444333333344434443 567
Q ss_pred HHHHHHHHH
Q 037499 211 LKLKEDMMR 219 (262)
Q Consensus 211 ~~~~~~~~~ 219 (262)
+.++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 778887764
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.46 E-value=0.44 Score=32.36 Aligned_cols=115 Identities=9% Similarity=0.023 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC-chHH
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVS--PDA-------CSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQP-TLVT 193 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~ 193 (262)
+-.-+..+...|.++.|+-+...+..... ++. .++..+..++...+++..|...|++..+.. .-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33446677778888888877766544322 221 255667777788888888888888765421 111 1111
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
.+.+- ...... .......+...--.+..||.+.|++++|+.+++.+
T Consensus 103 ~~~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11110 000000 00022334455555778888999999999888764
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.05 E-value=0.75 Score=29.93 Aligned_cols=72 Identities=11% Similarity=0.019 Sum_probs=49.2
Q ss_pred CCCChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 152 VSPDACSYNILMHGCVVSRRL---EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
+.+++.+--.+.-++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCC
Confidence 337777766666677766654 46788888887765322344555566688888888888888888874 4664
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.75 E-value=0.68 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
.-+..+-++.+... .+.|++.+..+.+++|-+.+++..|.++|+.++
T Consensus 26 ~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 26 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444554443 355555555555555555555555555555554
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.44 E-value=2.5 Score=34.00 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=121.8
Q ss_pred CChhHHHHHHHHHHhc----CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHH----HhcC
Q 037499 65 KMFDEVQQILHQLKHD----TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAM----LTCG 136 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g 136 (262)
++++.|++.+..+.+. .....+......++..|...++++...+.+.-+.+..... ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 6788888888766653 1244557778889999999999999988887766443122 23334444433 2233
Q ss_pred CHHH--HHHHHHHHHhc--CC--C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCc---hHHHHHHHHHHH
Q 037499 137 KIDR--MTDLFQIMEKY--VS--P---DACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPT---LVTFGTLIYGLC 202 (262)
Q Consensus 137 ~~~~--a~~~~~~~~~~--~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~ 202 (262)
..+. -+.+.+..... +. . .......+...|...|++.+|.+++..+... |..+. ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3332 22222221111 11 1 2234567889999999999999999998753 32222 345666788899
Q ss_pred hhCCHHHHHHHHHHHHHh-cCCC--CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMRV-YNVK--PD--AQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~-~~~~--p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
..+++..|..++.++... .... |+ ...|...+..+...+++.+|...|.+..+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999987432 1122 22 23566677778888898888887776643
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.29 E-value=2.2 Score=32.80 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=71.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhcCCCCChhhHHHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQ----VFDEMSSFNVQRTVKSFNTLLNA 131 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~~ 131 (262)
++..-|.+.+++++|++++..- ...+.+.|+...|-+ +++-+.+.+++++......++..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444556666666666654332 223334455433333 33445556667777666667666
Q ss_pred HHhcCCHHH-HHHHHHHH----HhcC--C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 132 MLTCGKIDR-MTDLFQIM----EKYV--S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 132 ~~~~g~~~~-a~~~~~~~----~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
+.....-+- -..+.+.+ .+.+ + -|+.....+...|.+.+++.+|...|- .|..++...|..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHH
Confidence 665543111 11122221 2222 3 778888889999999999999888773 2334444666656555444
Q ss_pred hC
Q 037499 204 EL 205 (262)
Q Consensus 204 ~g 205 (262)
.+
T Consensus 180 ~~ 181 (336)
T 3lpz_A 180 QD 181 (336)
T ss_dssp TS
T ss_pred hc
Confidence 43
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.03 E-value=0.87 Score=33.66 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK 150 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 150 (262)
.+.|+++.+++....-++.. |-|...-..++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555544444433 44444444455555555555555554444443
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.5 Score=37.87 Aligned_cols=58 Identities=3% Similarity=-0.142 Sum_probs=25.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEM 113 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (262)
.+...|.+.|+++.|.+.+.++.... +..--...+-.+++.+...+++..+...+.+.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34444445555555555554444321 11112333444444444445555444444443
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.67 E-value=1.7 Score=34.82 Aligned_cols=97 Identities=8% Similarity=-0.120 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHH--
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS---PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTL-- 197 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l-- 197 (262)
+...+...|.+.|++++|.++|.++..... .-...+-.+++.+...+++..+...+.+.... .-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455566666666666666666666654332 22344555566666666666666666655432 111122221111
Q ss_pred --HHHHHhhCCHHHHHHHHHHHHHh
Q 037499 198 --IYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 198 --i~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11123445666666666555554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.26 E-value=1.5 Score=28.54 Aligned_cols=44 Identities=7% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 106 ALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
..+-++.+....+.|++.+....+.+|.+.+++.-|.++|+-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.38 E-value=0.0076 Score=48.51 Aligned_cols=186 Identities=9% Similarity=0.071 Sum_probs=112.1
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 037499 3 KAKPTSPFRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR 82 (262)
Q Consensus 3 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (262)
-.+|..+..++.+..+.|.+++-+..+.-.++.. ..|.+ =+.|+-+|++.++..+-.+++.
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~----------ke~~I--DteLi~ayAk~~rL~elEefl~------- 140 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----------RESYV--ETELIFALAKTNRLAELEEFIN------- 140 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC----------CSTTT--THHHHHHHHTSCSSSTTTSTTS-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh----------ccccc--HHHHHHHHHhhCcHHHHHHHHc-------
Confidence 4678889999999999999999999999886652 22233 3377889999888766444322
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------------------CCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--------------------NVQRTVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
.|+..-...+..-|...|.++.|.-+|..+... .-.-++.||--+-.+|...+.+.-|.
T Consensus 141 -~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 141 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp -CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred -CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 244444555666666777776666555543211 01235667888888888777776665
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHH
Q 037499 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 214 (262)
..--.+.-. +.-...++..|-..|.+++-+.+++.-... -.....+|+-|.-.|++ -++++..+.+
T Consensus 220 icGLniIvh----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK-Y~PeKlmEHl 285 (624)
T 3lvg_A 220 MCGLHIVVH----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK-FKPQKMREHL 285 (624)
T ss_dssp HHHHHHHCC----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS-SCTTHHHHHH
T ss_pred Hhcchhccc----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh-cCHHHHHHHH
Confidence 554433321 111223445566677777766666665532 23345566666555543 2344433333
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.86 E-value=4.3 Score=30.88 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=74.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhcCCCCChhhHHHHHH
Q 037499 59 TKLGRAKMFDEVQQILHQLKHDT----RVVPEEIIFCNVISFYGRARLLEHALQ----VFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
......|++=+|.+.++-+..+. ...--......-...+.+.|+...|-+ +.+.+.+.+.+++......++.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444566666665554443321 111111222223334455676554444 3455566677777777777777
Q ss_pred HHHhcCCHH-HHHHHHHHH----HhcC--C-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499 131 AMLTCGKID-RMTDLFQIM----EKYV--S-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 131 ~~~~~g~~~-~a~~~~~~~----~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (262)
.+.....-+ .-.++++.+ .+.+ + .++.....+...|.+.|++.+|+..|-. |-.-|...+..++.-+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 765533211 112222222 2222 2 6778888888888888888888877641 11113455555554444
Q ss_pred hh
Q 037499 203 LE 204 (262)
Q Consensus 203 ~~ 204 (262)
..
T Consensus 177 ~~ 178 (312)
T 2wpv_A 177 CQ 178 (312)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.62 E-value=4 Score=30.19 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
..+.|.+++|++....-.+..|.|...-..++..+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555555555555555555443
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.38 E-value=2.5 Score=27.47 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=50.4
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 037499 119 QRTVKSFNTLLNAMLTCGK---IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR 185 (262)
Q Consensus 119 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 185 (262)
.|+..+--.+..++.++.. ..+++.+++.+.+.++ .....+--+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 6777776667777777765 4467888888776655 34556667778888999999999999988885
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.09 E-value=2.8 Score=27.61 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 154 PDACSYNILMHGCVVSRRL---EDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
++..+--.+.-++.+..+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+. .|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~---eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---ERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---CCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---CCC
Confidence 6666666666677776654 467778888777543223444445566788888888888888888853 564
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.81 E-value=7.5 Score=30.69 Aligned_cols=168 Identities=7% Similarity=-0.028 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCCChhhH--
Q 037499 52 LHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVP---EEIIFCNVISFYGRAR-LLEHALQVFDEMSSFNVQRTVKSF-- 125 (262)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 125 (262)
.+...+...|.+.|+.++..+++.....-.+..+ .......++..+.... ..+.-.++..+..+-. .-...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4567889999999999999999988865322223 2445677888887754 3344444444433211 0111223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCchHH
Q 037499 126 ----NTLLNAMLTCGKIDRMTDLFQIMEKYVS-PD-----ACSYNILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVT 193 (262)
Q Consensus 126 ----~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~ 193 (262)
..++..|...|++.+|.+++..+..... .| ...+..-+..|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 3678899999999999999998876533 22 345667788899999999999999887654 22233333
Q ss_pred HHHH----HHHHH-hhCCHHHHHHHHHHHHHh
Q 037499 194 FGTL----IYGLC-LELRVDEALKLKEDMMRV 220 (262)
Q Consensus 194 ~~~l----i~~~~-~~g~~~~a~~~~~~~~~~ 220 (262)
...+ ...+. ..+++..|...|-+..+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2221 12345 789999998887776554
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.76 E-value=4.7 Score=28.34 Aligned_cols=56 Identities=9% Similarity=-0.005 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc
Q 037499 135 CGKIDRMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT 190 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~ 190 (262)
++...++.++|..|...+. .-...|......+...|++.+|..+|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4446678888888877666 5667788888888888888888888888888776663
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.47 E-value=2.8 Score=32.54 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE--LSLALGFKEEMVRNKIE 259 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~ 259 (262)
...++.-|...|+.++|.+.++++..- .+ -...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 566777788888888888888887321 11 122334455555554433 34566777777766653
No 266
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=86.97 E-value=4.5 Score=26.13 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCC
Q 037499 125 FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR--LEDAWKVFDEMLKRRL 187 (262)
Q Consensus 125 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~ 187 (262)
...++.-|...|+.++|.+.++++.........+...+..+.-+.++ .+.+..++..+.+.|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666666666666666666643211223333444444444322 3455566666655543
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.64 E-value=6.5 Score=27.63 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=44.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 169 SRRLEDAWKVFDEMLKRRLQPT-LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
.++...+..+|..|...|+.-. ..-|......+...|++.+|..+|+.-.+. +..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 4457789999999998876443 456777788888899999999999988876 66774
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=85.91 E-value=3.6 Score=27.52 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 126 NTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 126 ~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.39 E-value=4.6 Score=24.74 Aligned_cols=78 Identities=8% Similarity=-0.069 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181 (262)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 181 (262)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|.++... +.|-.+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44555555555554331 11111112233445555555555433222 2555555544433 55555555555545
Q ss_pred HHHCC
Q 037499 182 MLKRR 186 (262)
Q Consensus 182 m~~~~ 186 (262)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 54443
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.14 E-value=6.2 Score=26.01 Aligned_cols=69 Identities=6% Similarity=-0.061 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 85 PEEIIFCNVISFYGRARLL---EHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
|+..+-....-++.+..+. .+++.+++++.+.+-.......--|.-++.+.|++++|.+..+.+.+..|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 4444444444444444432 34445555544432111111122233344455555555555555444433
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.98 E-value=4.9 Score=24.68 Aligned_cols=77 Identities=9% Similarity=-0.052 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 102 LLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDE 181 (262)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 181 (262)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+... .||...|.++... +.|-.+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44555555555544331 11111112233445555555555443322 2555555544433 44555555555544
Q ss_pred HHHC
Q 037499 182 MLKR 185 (262)
Q Consensus 182 m~~~ 185 (262)
+..+
T Consensus 95 la~s 98 (116)
T 2p58_C 95 LARS 98 (116)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 4444
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.51 E-value=2.1 Score=31.37 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILH 75 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~ 75 (262)
+.+...++.|+.+.+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 44556677788776666654
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=81.89 E-value=5.6 Score=28.27 Aligned_cols=185 Identities=9% Similarity=-0.006 Sum_probs=90.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHH
Q 037499 57 IITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS--FNTLLNAM 132 (262)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~ 132 (262)
.+...++.|+.+.+..+++.+.+. +..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 345667789998888888866553 3333311 01123444456677654 444445554443221 12234445
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHH---HHHHHHHHHhhC
Q 037499 133 LTCGKIDRMTDLFQIMEKY----VSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVT---FGTLIYGLCLEL 205 (262)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g 205 (262)
+..|+.+-+..+++..... ...+....+.+ ...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQE----TVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHH----HHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 5678877666666554311 11222222333 2334556644 4455555555444221 123334455678
Q ss_pred CHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 206 RVDEALKLKEDMMRVYNVKPDA---QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
+.+-+..++ +. |..++. .-.+. +...+..|+.+ +++.+.+.|..|+
T Consensus 162 ~~~~v~~Ll----~~-g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 162 SLSMVQLLL----QH-GANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp CHHHHHHHH----HT-TCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CHHHHHHHH----Hc-CCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 776554444 32 444432 11222 23334556644 4555556776665
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.58 E-value=7 Score=23.96 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|. -.+.|--+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 46677777776666544 3333334456677888888888776544 367877777663 3577888888777777
Q ss_pred HHH
Q 037499 217 MMR 219 (262)
Q Consensus 217 ~~~ 219 (262)
+..
T Consensus 94 la~ 96 (115)
T 2uwj_G 94 LGG 96 (115)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.54 E-value=16 Score=28.06 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=31.3
Q ss_pred CChhHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037499 65 KMFDEVQQILHQLKHDTRV---VPEEIIFCNVISFYGRARLLEHALQVFDE 112 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (262)
+++++.++-++.-.+...+ ---..+|.++..-|.+.+++++|++++..
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3455555555555554322 22345677788889999999999998754
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=81.32 E-value=17 Score=28.23 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 037499 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQVFASLIKG 236 (262)
Q Consensus 159 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 236 (262)
...++.=|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+... ++-+.......+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
Confidence 577788888889999999998888643221 23334444444444333 45577788777765 555554444444444
Q ss_pred HHh
Q 037499 237 LCA 239 (262)
Q Consensus 237 ~~~ 239 (262)
+..
T Consensus 298 l~~ 300 (358)
T 3eiq_C 298 YNE 300 (358)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.98 E-value=7.5 Score=23.89 Aligned_cols=76 Identities=8% Similarity=-0.064 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+- .||...|..|. -.+.|--+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 46777777777766544 33333344566778899998888776543 67888777764 3577888887777767
Q ss_pred HHH
Q 037499 217 MMR 219 (262)
Q Consensus 217 ~~~ 219 (262)
+..
T Consensus 95 la~ 97 (116)
T 2p58_C 95 LAR 97 (116)
T ss_dssp HTT
T ss_pred HHh
Confidence 644
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.78 E-value=10 Score=25.31 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 141 MTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 141 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
+.++|..|...+. .-...|......+...|++.+|..+|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666655544 445555666666666666666666666666655554
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.58 E-value=14 Score=25.03 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCch
Q 037499 141 MTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTL 191 (262)
Q Consensus 141 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 191 (262)
+.++|..|...+. .-...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5566777766655 45566677777777777777777777777776666643
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=76.80 E-value=22 Score=26.93 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHH
Q 037499 159 YNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQV 229 (262)
Q Consensus 159 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~ 229 (262)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+. ++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 356777777788888888888877532111 12333344444444322 34566777777655 54444443
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=76.75 E-value=12 Score=27.68 Aligned_cols=145 Identities=8% Similarity=-0.066 Sum_probs=69.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHh
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLT 134 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 134 (262)
+...+..|+.+-+..+++.- ..++...-.+.+...+..|+.+-+..+ .+.|..++. .-++ .+...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAG-----ALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTT-----GGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCc-HHHHHHH
Confidence 44556678877766666542 222111112234445566776544443 444544432 1222 3344456
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-chHHHHHHHHHHHhhCCHHHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP-TLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
.|+.+-+..+++.-......+...+.+.+...+..|+.+ +++.+.+.|..+ +...-.+.+...+..|+.+-+..+
T Consensus 105 ~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~L 180 (285)
T 3kea_A 105 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILL 180 (285)
T ss_dssp TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHH
Confidence 677766555555422111133333334444555667754 444444444333 221223334455677887766666
Q ss_pred HHH
Q 037499 214 KED 216 (262)
Q Consensus 214 ~~~ 216 (262)
++.
T Consensus 181 l~~ 183 (285)
T 3kea_A 181 LDY 183 (285)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.40 E-value=34 Score=28.89 Aligned_cols=221 Identities=10% Similarity=-0.042 Sum_probs=123.1
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFC 91 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (262)
-...+.+.+++...+..+... +.+...-.....+....|+-.+|......+-......|+ .+.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~~---------------p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~ 140 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPEK---------------PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACD 140 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCSC---------------CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHH
T ss_pred HHHHHHhCCCHHHHHHhccCC---------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHH
Confidence 345566788888888766542 125555555666777788877777766666554322233 345
Q ss_pred HHHHHHHhcC------------------CHHHHHHHHHHHh-----------h--cCCCCChhhH-----------HH--
Q 037499 92 NVISFYGRAR------------------LLEHALQVFDEMS-----------S--FNVQRTVKSF-----------NT-- 127 (262)
Q Consensus 92 ~l~~~~~~~~------------------~~~~a~~~~~~~~-----------~--~~~~~~~~~~-----------~~-- 127 (262)
.++..+.+.| +...|..+...+. . .+ +++.... ..
T Consensus 141 ~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 219 (618)
T 1qsa_A 141 KLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN-PNTVLTFARTTGATDFTRQMAA 219 (618)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC-GGGHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC-hHhHHHHHhccCCChhhHHHHH
Confidence 5555544433 3333333322210 0 00 1111100 01
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhcCCCChhHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHH
Q 037499 128 -LLNAMLTCGKIDRMTDLFQIMEKYVSPDACSY----NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLC 202 (262)
Q Consensus 128 -ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 202 (262)
.+.-+.+ .+.+.|...+.........+.... ..+.......+...++...+....... .+.....-.++...
T Consensus 220 ~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 220 VAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHH
Confidence 1111222 366888888888765544333322 333334444453455666666554432 33333444555566
Q ss_pred hhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 203 LELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 203 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
+.|+++.|...|..|... ......-.-.+..++...|+.++|..+|..+..
T Consensus 297 r~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 789999999999888542 112344456677788899999999999998764
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=75.55 E-value=20 Score=25.89 Aligned_cols=89 Identities=12% Similarity=0.030 Sum_probs=47.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC--CC-----hhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 128 LLNAMLTCGKIDRMTDLFQIMEKYVS--PD-----ACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 128 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
-++.+....++++|.+++++.++.-. ++ .......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 36777778888888888877654321 11 12222233333333333333444444422 3344555556666
Q ss_pred HHhhCCHHHHHHHHHHHHH
Q 037499 201 LCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~ 219 (262)
+.+.|+-++|..+|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6677777777777666543
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.21 E-value=46 Score=29.81 Aligned_cols=47 Identities=4% Similarity=-0.002 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCh----hHHHHHHHHHHhcC
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDA----CSYNILMHGCVVSR 170 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g 170 (262)
-|..++..+-+.+.++.+.++-+.....-. .|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 477888888899999988888877765433 232 36777777776554
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=75.09 E-value=21 Score=25.82 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC-CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDT-RVVP----EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
--+..+....++++|..++++..+.. ++++ ........+..-.....-..+..+.+++.. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 34678888999999999998776531 1221 111223334433343444445555555533 345556677778
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037499 131 AMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~ 149 (262)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8899999999999986654
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.32 E-value=13 Score=24.83 Aligned_cols=64 Identities=9% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhcCC
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNV 118 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 118 (262)
....++.-|...|+.++|.+.++++... .--...+...+..++-+.++ .+.+.+++..+.+.|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP--HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4556788888888888888888888531 11123334444445544322 4556677777766553
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.28 E-value=35 Score=28.04 Aligned_cols=67 Identities=3% Similarity=-0.025 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCCh--hhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 87 EIIFCNVISFYGRARLLEHALQVFDEMSSFNV-QRTV--KSFN-TLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
..+++.+++.|...+.+++|.++..+..---. .++. ..|. -+...+.-.+++.+|.+.+.......+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 56788899999999999999999998752100 1111 1222 234566778999999999988776554
No 288
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=73.58 E-value=11 Score=25.47 Aligned_cols=69 Identities=6% Similarity=0.010 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCC
Q 037499 68 DEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSF--NVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~ 137 (262)
+.+++-+.+..+..|++++.. -..++..+...+.+-.|.++++.+.+. +...+..|.-.-+..+.+.|-
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 444444544444446666554 334455555555666677777777665 434444443334455555553
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.98 E-value=28 Score=28.59 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HH-HHHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IF-CNVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
-...+|.+++.|...+.++.|..+.....--....++.. .| .-+...+.-.+++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356789999999999999999999998853111112222 22 23566777889999999999988764
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.70 E-value=25 Score=24.07 Aligned_cols=172 Identities=9% Similarity=-0.104 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHH
Q 037499 50 NLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLL 129 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 129 (262)
+...-...+..+.+.+.....-.+.+ +... ++..+-...+.++...+..+ +...+..+.. .++..+-...+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~~----~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIK-ALKD----EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC----SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHH-HHcC----CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 66666777777777776544444443 3332 45666666777777777653 3444444443 46677777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 130 NAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
.++.+.+..+ +...+..+.. .++..+-...+.+..+.++.+ +...+..+... ++...-...+.++.+.|.. +
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~-~ 169 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK--DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE-R 169 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHHhCcHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-h
Confidence 8888877754 3344444433 267777777788888887754 44444444442 4666666777777777764 4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
+...+..+.+. ++..+-...+.++.+.+.
T Consensus 170 ~~~~L~~~l~d----~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 170 VRAAMEKLAET----GTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHH----CCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHHHHHh
Confidence 66666666654 566666666666666543
No 291
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=68.32 E-value=38 Score=25.99 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCC
Q 037499 54 YDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR--LLEHALQVFDEMSSFNV 118 (262)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 118 (262)
...++.-|...|+.++|.+.++++... .. .......++......+ ..+.+.+++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~--~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP-SL--LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-GG--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc-cc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456788889999999999999988642 11 2222233333332222 23455666777766553
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=67.74 E-value=31 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 140 RMTDLFQIMEKYVS--PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 140 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
++.++|..|...+. .-...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555544444 334445555555555555555555555555544444
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=67.14 E-value=22 Score=22.83 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCC--HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELR--VDEALKLKEDMMRVYNVKPDAQVFASL 233 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l 233 (262)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+.+++..+... ++-+.......+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~~q~~~Gf 84 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCHHHHHHHH
Confidence 3567888899999999999999998632111 23334444445555432 46678888888765 555544443333
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.94 E-value=28 Score=23.49 Aligned_cols=49 Identities=6% Similarity=-0.027 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHH
Q 037499 205 LRVDEALKLKEDMMRVYNVKP--DAQVFASLIK-G-----LCAVGELSLALGFKEEMV 254 (262)
Q Consensus 205 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~ 254 (262)
|++-+|-++|+.+... .-.+ ....|..||+ . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~-~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYN-YGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTT-TCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555555555443 2222 2334444444 1 123455555555555543
No 295
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=64.69 E-value=19 Score=25.23 Aligned_cols=181 Identities=12% Similarity=0.032 Sum_probs=82.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHh
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLT 134 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 134 (262)
+...++.|+++....++..-.... ..++..-.+ .+...+..|+.+-+. .+.+.|..++. .-++. +...+.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLA-TRTDQDSRT-ALHWACSAGHTEIVE----FLLQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCC-HHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCC-HHHHHHHcCcHHHHH----HHHHhCCCCCCcCCCCCCH-HHHHHH
Confidence 556777899998888887643311 111221122 233445667765444 34444544432 22233 334455
Q ss_pred cCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchH---HHHHHHHHHHhhCCHHHHH
Q 037499 135 CGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLV---TFGTLIYGLCLELRVDEAL 211 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~ 211 (262)
.|+.+-+..+++.-......+....+.+ ...+..|+.+-+ +.+.+.|..++.. -.+ .+...+..|+.+-+.
T Consensus 83 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 83 AGXDEIVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIA----VMLLEGGANPDAKDHYDAT-AMHRAAAKGNLKMVH 156 (231)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCc-HHHHHHHcCCHHHHH
Confidence 6766544444432111111233223333 334456665544 4444455444322 222 333445667766544
Q ss_pred HHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 212 KLKEDMMRVYNVKPDA---QVFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 212 ~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
.+++ . |..++. .-.+. +...+..|+.+ +++.+.+.|..|+
T Consensus 157 ~Ll~----~-g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 157 ILLF----Y-KASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHH----T-TCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHh----c-CCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 4443 2 444332 11222 23334555543 4445556666654
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.58 E-value=28 Score=23.17 Aligned_cols=68 Identities=7% Similarity=0.054 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
...|+.-...-+..--...+ +.++|..|...|+-.. ...|......+...|++.+|.++|+.-.+..-
T Consensus 64 YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45666554444443333333 6788888877665444 34577777778888888888888888776554
No 297
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=64.14 E-value=47 Score=25.49 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCccHH
Q 037499 10 FRLASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA-KMFDEVQQILHQLKHDTRVVPEEI 88 (262)
Q Consensus 10 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 88 (262)
..++.-|...|+.++|...++.+.. +......+...+..++-+. ...+.+..++..+.+. ++-+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~-----------p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~-~~is~~~ 82 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS-----------PSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA-GHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC-----------GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT-TSSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----------cccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC-CCCCHHH
Confidence 5678889999999999999999932 2222333333333333332 2345666777777765 4444333
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHh
Q 037499 89 IFCNVISFYGRAR----LLEHALQVFDEMS 114 (262)
Q Consensus 89 ~~~~l~~~~~~~~----~~~~a~~~~~~~~ 114 (262)
....+-..+.... |...|...+.++.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHH
Confidence 3222222222221 3445555555543
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=63.70 E-value=32 Score=23.37 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=12.3
Q ss_pred HHhhcCChHHHHHhhcCC
Q 037499 15 LLRLQKDPKLALQLFKNP 32 (262)
Q Consensus 15 ~~~~~g~~~~A~~~~~~~ 32 (262)
..+..|+.+....++..-
T Consensus 11 ~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT
T ss_pred HHHHhccHHHHHHHHHcC
Confidence 345577788777777654
No 299
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.52 E-value=15 Score=26.58 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=40.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCchHH--HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCC
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQPTLVT--FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA---QVFASLIKGLCAVGE 242 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~ 242 (262)
..++.....++++.+.+.|..++... -.+.+...++.|+.+-+..+++. .|..++. .-.+.+ ....+.|+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~g~~~~~~~~~g~t~l-~~A~~~~~ 265 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTAL-LLAVELKL 265 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS----SSCCTTCCCTTSCCHH-HHHHHTTC
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc----cCCCccccCCCCCcHH-HHHHHcCc
Confidence 44554455566666666665544321 11223344556666554444431 2433321 112222 22334454
Q ss_pred hhHHHHHHHHHHHcCCCCC
Q 037499 243 LSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 243 ~~~a~~~~~~m~~~g~~pd 261 (262)
. ++.+-+.+.|..||
T Consensus 266 ~----~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 266 K----KIAELLCKRGASTD 280 (285)
T ss_dssp H----HHHHHHHHHSSCSC
T ss_pred H----HHHHHHHHcCCCCC
Confidence 4 34555666777766
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.23 E-value=38 Score=24.12 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhcCCCCccH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 67 FDEVQQILHQLKHDTRVVPEE-IIFC-----NVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
.+.|+-+|+.+.+...+.... .... ..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 457999999998864222221 1112 2345678889999999999888764
No 301
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=62.28 E-value=35 Score=23.36 Aligned_cols=113 Identities=10% Similarity=0.074 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 139 DRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 139 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
+.+..++..+.+.+. .|...-..++....+.|.+. ...+-.++...|+.++ +....+..+......+.|..++++-
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~~--~I~~al~~~~~~de~e~a~~l~~Kk 126 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDDN--IAEDALILYTDKLQVEKGVTLAEKL 126 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCHH--HHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCHH--HHHHHHHhCCchhHHHHHHHHHHHH
Confidence 345566666666666 44444455566655544432 3566667777777533 2233332221122344566666554
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 037499 218 MRVYNVKPDAQVFASLIKGLCAVGE-LSLALGFKEEMV 254 (262)
Q Consensus 218 ~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 254 (262)
.....-.++.....-++..+.+.|- .+.+..+++.+.
T Consensus 127 ~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 127 ANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 4432222333445566666677773 555555665543
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.14 E-value=36 Score=23.50 Aligned_cols=173 Identities=9% Similarity=-0.117 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTL 128 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (262)
++...-...+..+.+.+..+ +...+..+... ++..+-...+.++.+.++.+ +...+..+.. .++..+-...
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD----EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC----SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 36777777788888888744 44444444442 46666677778888887653 4444444443 4677777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHH
Q 037499 129 LNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 129 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (262)
+.++.+.|..+ +...+..+.. .++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+. .
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK--DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHhCcHH-HHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 88888888754 4444444443 277777778888888888754 4444555544 3466666677778888877 4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
.+...+..+.+. ++..+-...+.++.+.+.
T Consensus 174 ~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 174 RVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
Confidence 566667677664 566666666666665543
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.96 E-value=30 Score=22.61 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=28.8
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 137 (262)
|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 17 g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 17 GVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp TCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 5555543 223344444455556677777777665544444444444455555443
No 304
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.21 E-value=52 Score=25.00 Aligned_cols=174 Identities=16% Similarity=0.044 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhcCCCCCh--hhHHHHHHHHHhcCCHH
Q 037499 66 MFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEM----SSFNVQRTV--KSFNTLLNAMLTCGKID 139 (262)
Q Consensus 66 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~--~~~~~ll~~~~~~g~~~ 139 (262)
.+++.+.-++.-.+....---...|.++..-|.+.+++++|++++..- .+.| ..+. .....++..|.+.+..
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~-Q~~sa~DLa~llvev~~~~~~~- 89 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAK-QGGSGTDLIFYLLEVYDLAEVK- 89 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCC-CcchHHHHHHHHHHHHHHcCCC-
Confidence 466666666666665333334678888999999999999999887543 2333 1111 1112233444333211
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh-HHHHHHHHHH----HCC--CCCchHHHHHHHHHHHhhCCHHHHHH
Q 037499 140 RMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE-DAWKVFDEML----KRR--LQPTLVTFGTLIYGLCLELRVDEALK 212 (262)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~ 212 (262)
++......++..+.....-+ .=.++++++. +.| ..-|+.....+...|.+.|++.+|..
T Consensus 90 --------------~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 90 --------------VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp --------------CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 44444444444444322111 1122233332 221 12356677777778888888888777
Q ss_pred HHH---------------HHHHhc-CCCCC-HHHH-HHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 213 LKE---------------DMMRVY-NVKPD-AQVF-ASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 213 ~~~---------------~~~~~~-~~~p~-~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.|- +..+.. +..|. ...| ...+-.|.-.|+...|..+++...+
T Consensus 156 H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 156 YFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 552 111111 01221 1111 2223345567888888888887653
No 305
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.11 E-value=38 Score=23.39 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=96.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
++..+-...+..+.+.+..+ +...+..+.. .++..+-...+.++.+.+..+ +...+..+.. .++..+-...+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--~~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK--DEDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc--CCCHHHHHHHHH
Confidence 45666666677777777643 4444444444 356666667777777777643 3444444433 277777788888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 244 (262)
+..+.++.+.. ..+..+.. .++...-...+.++.+.|..+ +...+..+.+ .++..+-...+.++.+.+. .
T Consensus 104 aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 104 ALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-h
Confidence 88888886544 44444443 356666666777777777643 4455555543 4677777778888888877 4
Q ss_pred HHHHHHHHHHH
Q 037499 245 LALGFKEEMVR 255 (262)
Q Consensus 245 ~a~~~~~~m~~ 255 (262)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 56666666654
No 306
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.98 E-value=37 Score=23.22 Aligned_cols=154 Identities=10% Similarity=-0.053 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMH 164 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 164 (262)
++..+-...+..+.+.+..+ +...+.++.. .++..+-...+.++.+.|..+ +...+..+... ++..+-...+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d--~~~~vr~~a~~ 98 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALKD--EDGWVRQSAAV 98 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC--SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC--CCHHHHHHHHH
Confidence 34444444455555555432 2333333333 345555555666666666543 33333333332 67777778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChh
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELS 244 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 244 (262)
++.+.++.+....+ ..+.. .++...-...+.++.+.++. .+...+..+.. .++..+-...+.++.+.|. .
T Consensus 99 aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 99 ALGQIGDERAVEPL-IKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHCCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHhCcHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-h
Confidence 88888876544444 44443 34666666667777777764 34444444443 4677777778888888876 4
Q ss_pred HHHHHHHHHHH
Q 037499 245 LALGFKEEMVR 255 (262)
Q Consensus 245 ~a~~~~~~m~~ 255 (262)
++...+..+.+
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 56666666554
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=60.93 E-value=66 Score=26.11 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=43.6
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHH
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNI 161 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (262)
|++--...|..-...+...|++++|-++--...+ |+-.+..|.+.+-..=...|+..--+.+|..+.+.+..+..--.-
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlE 434 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLE 434 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhH
Confidence 3444444455555555555666665555443332 233444444444433333444444555555555544444433334
Q ss_pred HHHHHHhcCChhHHH
Q 037499 162 LMHGCVVSRRLEDAW 176 (262)
Q Consensus 162 l~~~~~~~g~~~~a~ 176 (262)
+++.-...|+.+-..
T Consensus 435 l~r~vL~q~r~~lle 449 (494)
T 1bpo_A 435 LCRPVLQQGRKQLLE 449 (494)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HhHHHHhccHHHHHH
Confidence 444444455544333
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=60.91 E-value=28 Score=22.81 Aligned_cols=54 Identities=7% Similarity=-0.030 Sum_probs=27.9
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 81 TRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 13 ~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 13 RGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp TTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 356665542 22333444444 5567777777766654445544333445555444
No 309
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.18 E-value=37 Score=22.97 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 106 ALQVFDEMSSFNVQRTV-KSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 106 a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
+.++|..|...|+-... ..|......+...|++.+|.++|+.-....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44455555555443322 334555555555666666666665555544
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=59.87 E-value=34 Score=22.43 Aligned_cols=30 Identities=13% Similarity=-0.066 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHh
Q 037499 174 DAWKVFDEMLKRRLQPTLVTFGTLIYGLCL 203 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 203 (262)
.|.++++.+.+.+...+..|.-.-+..+..
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 444444444443333333333333333333
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.80 E-value=34 Score=22.54 Aligned_cols=45 Identities=7% Similarity=-0.070 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333333344444444444444433334433333333444333
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=59.31 E-value=8.8 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHhcCCCCccH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEE 87 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~ 87 (262)
-+++.|+..|.++.....+||+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 47899999999998776677764
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.80 E-value=1e+02 Score=27.65 Aligned_cols=48 Identities=21% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcC
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDA----QVFASLIKGLCAVG 241 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 241 (262)
-|..++..+-+.+-++.+.++-+...+.. -.-|. ..|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 57788899999999999999988888642 12222 36777887777655
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=58.33 E-value=34 Score=22.04 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=20.1
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 161 ILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 161 ~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3334443333 44445555555555444444444444444444443
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=58.25 E-value=37 Score=22.39 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhcC
Q 037499 139 DRMTDLFQIMEKYV 152 (262)
Q Consensus 139 ~~a~~~~~~~~~~~ 152 (262)
-.|.++++.+.+.+
T Consensus 34 ~sa~ei~~~l~~~~ 47 (150)
T 2w57_A 34 ISAEELYKKLIDLG 47 (150)
T ss_dssp EEHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhC
Confidence 33444444444433
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=57.34 E-value=38 Score=22.30 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 037499 82 RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK 137 (262)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 137 (262)
|++++.. -..++..+...+.+-.|.++++.+.+.+...+..|.---+..+...|-
T Consensus 22 g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 22 GLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp C--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 5655554 233444444555566677777777665544455444444455555543
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.03 E-value=51 Score=23.61 Aligned_cols=49 Identities=8% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037499 105 HALQVFDEMSSFNVQRT-VKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 105 ~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 153 (262)
.+..+|..|...|+-.. ...|......+...|++.+|.++|+.-....-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44566666665554333 23455566666666777777777666655443
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.66 E-value=42 Score=22.52 Aligned_cols=46 Identities=13% Similarity=0.014 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCchHHHHHHHHHHHhhC
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKR--RLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g 205 (262)
..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444555555555444 33344444333444444444
No 319
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=55.93 E-value=24 Score=19.57 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAML 133 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 133 (262)
++.++..++...-.+.++-.+++..+.| ..+..+|..-.+.++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3444445555445555555555555555 344444444444433
No 320
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.82 E-value=42 Score=23.52 Aligned_cols=157 Identities=10% Similarity=-0.043 Sum_probs=75.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKS--FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRR 171 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 171 (262)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-......+...++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 4455677999888888887766654444321 123344556677766544444321111112322223 3334456777
Q ss_pred hhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChhH
Q 037499 172 LEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAVGELSL 245 (262)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~ 245 (262)
.+-+..+++.....+..+ +..-.+.+ ...+..|+.+-+..++ +. |..++.. .-.+.+...+..|+.+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~-g~~~~~~~~~~g~t~L~~A~~~~~~~- 164 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQETVQLLL----ER-GADIDAVDIKSGRSPLIHAVENNSLS- 164 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHH----HT-TCCTTCCCTTTCCCHHHHHHHTTCHH-
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHHHHHHH----Hc-CCCcccccccCCCcHHHHHHHcCCHH-
Confidence 766665555433211111 22222333 3345667765544444 33 4443321 1122333445566654
Q ss_pred HHHHHHHHHHcCCCCC
Q 037499 246 ALGFKEEMVRNKIEMD 261 (262)
Q Consensus 246 a~~~~~~m~~~g~~pd 261 (262)
+++.+.+.|..++
T Consensus 165 ---~v~~Ll~~g~~~~ 177 (241)
T 1k1a_A 165 ---MVQLLLQHGANVN 177 (241)
T ss_dssp ---HHHHHHHTTCCTT
T ss_pred ---HHHHHHHcCCCCC
Confidence 4445556676654
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.57 E-value=40 Score=22.01 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHC
Q 037499 173 EDAWKVFDEMLKR 185 (262)
Q Consensus 173 ~~a~~~~~~m~~~ 185 (262)
-.|.++++.+.+.
T Consensus 38 ~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 38 PTADDIYKALEGK 50 (145)
T ss_dssp CCHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444333
No 322
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=55.53 E-value=12 Score=20.30 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 037499 104 EHALQVFDEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
++|.+.|.+|++..-.++..+|.-.+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555554332233344555555544
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=54.85 E-value=30 Score=22.13 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445556666666655544445555444445555444
No 324
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=54.82 E-value=28 Score=22.65 Aligned_cols=45 Identities=11% Similarity=-0.020 Sum_probs=22.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 161 ILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 161 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444555555555555544444444444444444444
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.96 E-value=53 Score=22.85 Aligned_cols=217 Identities=10% Similarity=-0.020 Sum_probs=96.2
Q ss_pred HHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHH
Q 037499 14 SLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNV 93 (262)
Q Consensus 14 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 93 (262)
...++.|+++....+++.-.. ...++..- .+.+...+..|+.+-+..+++.-.... ...+..-. +.
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~-----------~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~-t~ 79 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYD-----------VRQPDKEN-VTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNS-TP 79 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-----------TTCCCTTS-CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTB-CH
T ss_pred HHHHHcCChHHHHHHHHcCCC-----------cCCCCCCC-CCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCC-Ch
Confidence 345678999998888876422 11112211 124556677788776665554322110 01111011 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR 170 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 170 (262)
+...+..|+.+-+ +.+.+.|..++. ... +.+...+..|+.+-+..+++.-......+....+.+..+..+.+
T Consensus 80 L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 80 LHWATRQGHLSMV----VQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred hHHHHHcCCHHHH----HHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence 3444556776544 344444444432 122 23444556677664444443211111133333344444443333
Q ss_pred ChhHHHHHHHHHHHCCCCCchHH---HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCChhH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVT---FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQV--FASLIKGLCAVGELSL 245 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~ 245 (262)
.. ...++ +.+.|..++... -.+.+...+..|+.+-+..++ +. |..++... -.+.+....+.|+.+-
T Consensus 155 ~~-~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~-g~~~~~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 155 SV-DPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EA-GANVDAQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp SS-TTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HH-TCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred hH-HHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----Hc-CCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 33 33333 333443333221 112344556778876544444 33 44443211 0123444567777776
Q ss_pred HHHHHHHHHHcCC
Q 037499 246 ALGFKEEMVRNKI 258 (262)
Q Consensus 246 a~~~~~~m~~~g~ 258 (262)
+.-+++...+.|+
T Consensus 226 v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 226 INHLQEARQAKGY 238 (240)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHhhhccCc
Confidence 6666655554443
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=53.10 E-value=51 Score=22.44 Aligned_cols=25 Identities=8% Similarity=-0.170 Sum_probs=11.2
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCC
Q 037499 97 YGRARLLEHALQVFDEMSSFNVQRT 121 (262)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (262)
.+..|+.+.-.++.+.+.+.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444444444444444444443
No 327
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.88 E-value=63 Score=23.46 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=49.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHH
Q 037499 120 RTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLI 198 (262)
Q Consensus 120 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li 198 (262)
++..+-...+.++...|..+ +...+..+... ++..+-...+.+..+.+ .-..+...+..+.+. ++..+-...+
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d---~~~~vR~~A~ 213 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLKD--PNGDVRNWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEAI 213 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHTC--SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTC---SCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC--CCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444445555555555422 33333333222 34444444444444443 123333333333332 3444444455
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 199 YGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVR 255 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 255 (262)
.++.+.|+.. +...+..+.+. ++ .....+.++.+.|. ..+...+.++.+
T Consensus 214 ~aL~~~~~~~-~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 214 IGLSYRKDKR-VLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHTTCGG-GHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHhCCHh-hHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 5555555432 23333333321 22 22333445555555 344555554443
No 328
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=52.45 E-value=27 Score=22.14 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCC
Q 037499 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC---AVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 205 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p 260 (262)
..+++|.+.+..|++.....-.+..||..+..+. ..++. .+++..+++.++.|
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 4677888888888765222236677888777654 33333 45666677776643
No 329
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=49.87 E-value=87 Score=26.09 Aligned_cols=74 Identities=11% Similarity=-0.022 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHH
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLA 246 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 246 (262)
.+.+.......++...=.--+..-...+++.|.+.|-.+.|.++++.+-.+ ..-+-..| ..+..|.++|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k--~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ--MLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--HHHCccHH-HHHHHHHHcCChhhc
Confidence 444556666666665522223445666777888888888888888777542 22233444 445567777777654
No 330
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=49.79 E-value=90 Score=24.29 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRT----VKSFNTLLNAMLTCG-KIDRMTDLFQIMEKYVS 153 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~ 153 (262)
....++.-|...|+.++|.+.++++.. |+ ..++..+..++-+.. ..+.+-.++..+...+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 456788888999999999999988863 32 223333333333321 12444555566655444
No 331
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=49.64 E-value=34 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCCCCCh-hhH-----HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037499 103 LEHALQVFDEMSSFNVQRTV-KSF-----NTLLNAMLTCGKIDRMTDLFQIMEKY 151 (262)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~-~~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~ 151 (262)
.+.|+.+|+.+.+.- ++. ... -..+..|.+.|.+++|.++|++.-..
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 467777777766542 111 111 12234566777777777777775443
No 332
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=48.80 E-value=30 Score=23.08 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCC
Q 037499 205 LRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLC---AVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 205 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~p 260 (262)
..+++|.+.+..|++.....-.+..||..+..+. ..++. .+++..+++.++.|
T Consensus 72 ~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 72 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 4667788888777665222234556777776553 33343 55566676666643
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=48.66 E-value=55 Score=21.53 Aligned_cols=60 Identities=7% Similarity=-0.083 Sum_probs=29.6
Q ss_pred HHhcCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCH
Q 037499 148 MEKYVSPDACSYNILMHGCVVSR-RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRV 207 (262)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 207 (262)
+.+.+.-.+.--..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 33444433333344444444444 4555666666666655445555554455555555543
No 334
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=48.01 E-value=23 Score=19.19 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=13.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC
Q 037499 239 AVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 239 ~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
..|+++.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34566666666666666555555
No 335
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.47 E-value=54 Score=21.08 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHhhcC
Q 037499 102 LLEHALQVFDEMSSFN 117 (262)
Q Consensus 102 ~~~~a~~~~~~~~~~~ 117 (262)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3444555555554443
No 336
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=46.06 E-value=87 Score=24.53 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhcCCh--hHHHHHHHHHHHC
Q 037499 157 CSYNILMHGCVVSRRL--EDAWKVFDEMLKR 185 (262)
Q Consensus 157 ~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~ 185 (262)
.+|-.++.......++ +++..+++.+.+.
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G 54 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIMTG 54 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
Confidence 3455454444443332 3444555544443
No 337
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.38 E-value=38 Score=22.95 Aligned_cols=173 Identities=7% Similarity=-0.025 Sum_probs=74.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh---hHHHHHHHHHh
Q 037499 58 ITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK---SFNTLLNAMLT 134 (262)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~ 134 (262)
+...+..|+.+.+..++..-..... ..+..-.+ .+...++.|+.+-+. .+.+.|..++.. ..+ .+...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A~~ 81 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNT-PLNIAVHNNDIEIAK----ALIDRGADINLQNSISDS-PYLYAGA 81 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCC-HHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCC-HHHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCC-HHHHHHH
Confidence 4456677888877777754321111 11222222 333445667755443 444445444322 222 3344456
Q ss_pred cCCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC---chHHHHHHHHHHHhhCC-HH
Q 037499 135 CGKIDRMTDLFQIMEKYV-SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRR-LQP---TLVTFGTLIYGLCLELR-VD 208 (262)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~---~~~~~~~li~~~~~~g~-~~ 208 (262)
.|+.+-+..+++.-.... ..+....+. +...+..|+.+-+..+++ .| ..+ |..-.+.+..++ ..++ ..
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~-~~~~~~~ 155 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALIEAV-GLREGNQ 155 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHHHHH-HSSCCSH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcH-HHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHHHHH-Hhccchh
Confidence 677665555553321111 122222222 333445666654444443 33 222 223334444333 3343 22
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCChh
Q 037499 209 EALKLKEDMMRVYNVKPDAQVF--ASLIKGLCAVGELS 244 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~ 244 (262)
.-.++++.+.+. |..++.... .+-+....+.|+.+
T Consensus 156 ~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~ 192 (201)
T 3hra_A 156 LYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTE 192 (201)
T ss_dssp HHHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHh
Confidence 234455555554 666543321 12333444555554
No 338
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.30 E-value=61 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=9.9
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 037499 200 GLCLELRVDEALKLKEDMM 218 (262)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~ 218 (262)
.+...++++.|.++...+.
T Consensus 70 ~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 70 QELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555544
No 339
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=42.99 E-value=44 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.024 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 037499 96 FYGRARLLEHALQVFDEMSSFNVQRTV-------KSFNTLLNAMLTC---GKIDRMTDLFQIME 149 (262)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~a~~~~~~~~ 149 (262)
..++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCC
Confidence 344556666555556555555443332 223333333 333 66655555555433
No 340
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=42.41 E-value=88 Score=23.05 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 037499 201 LCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEM 253 (262)
Q Consensus 201 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 253 (262)
|....++.....++..|.......|+......++++|.+.-+-.+|.+.+...
T Consensus 183 C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 183 CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 33445666666677777665455677777777777777777777777666653
No 341
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=42.19 E-value=1.4e+02 Score=24.66 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC
Q 037499 191 LVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD 226 (262)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 226 (262)
......|-+.|.+.|++-+|-+++..+-.. +..++
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s-~~~i~ 251 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATS-NFDIT 251 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-SSCCC
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhC-CCCCC
Confidence 334455556677777777777777776554 44333
No 342
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=41.61 E-value=87 Score=23.78 Aligned_cols=43 Identities=5% Similarity=0.153 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~ 252 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ 252 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC
Confidence 4444555566666666666666665555566666666666554
No 343
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=41.25 E-value=1.6e+02 Score=24.64 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=41.0
Q ss_pred hHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHH
Q 037499 124 SFNTLLNAMLT--CGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYG 200 (262)
Q Consensus 124 ~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 200 (262)
.|..-+..+.. ...........+.+...-+ .+..-..-++..|.+.|-.+.|.++++.+-..-.. +...+ ..+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHH
Confidence 34444444333 2344555666666666656 66667788888888888888888888888765333 34455 45567
Q ss_pred HHhhCCHHHH
Q 037499 201 LCLELRVDEA 210 (262)
Q Consensus 201 ~~~~g~~~~a 210 (262)
|+++|+++.+
T Consensus 559 f~rA~~~~~V 568 (570)
T 3f3f_C 559 FSRAGKYELV 568 (570)
T ss_dssp ----------
T ss_pred HHHcCChhhc
Confidence 8888887764
No 344
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.79 E-value=50 Score=18.79 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 037499 210 ALKLKEDMMRVYNVKPDAQVFASLIKGLCAVG 241 (262)
Q Consensus 210 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 241 (262)
+.++++.+.+. +...+..|....+..+.+.|
T Consensus 36 ~~el~~~l~~~-~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 36 AEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 34444444332 22334444444444444443
No 345
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=40.23 E-value=67 Score=20.11 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHH
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKE 215 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 215 (262)
.+.+|+.-+++.... +.|......++..+... ++.++++.+...+. |+ .+.++.-.++...+.|-++.. +.|.
T Consensus 3 ~~~~al~~L~e~~~~-~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~ 76 (119)
T 1wty_A 3 SLARAVERLKAALER-PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWL 76 (119)
T ss_dssp CHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHH
T ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHH
Confidence 456677777666543 35555555565554433 56666666665543 55 355677777777777766554 4555
Q ss_pred HHHH
Q 037499 216 DMMR 219 (262)
Q Consensus 216 ~~~~ 219 (262)
.|.+
T Consensus 77 ~m~~ 80 (119)
T 1wty_A 77 EMLE 80 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 346
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.58 E-value=85 Score=21.12 Aligned_cols=52 Identities=8% Similarity=-0.039 Sum_probs=29.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--chHHHHHHHH-H-----HHhhCCHHHHHHHHHHHHH
Q 037499 168 VSRRLEDAWKVFDEMLKRRLQP--TLVTFGTLIY-G-----LCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 219 (262)
..|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3366666666666666553333 3444555555 2 2345777777777776655
No 347
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=38.75 E-value=99 Score=21.65 Aligned_cols=36 Identities=6% Similarity=-0.201 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRAR 101 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (262)
.+.+.|+-.+.+|.+. |..|.-..-..++.+....|
T Consensus 21 SDpDAAly~LaRMl~~-GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 21 SAPDAALYWYARILTA-GGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 5666666666666653 44444444444444444333
No 348
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=37.79 E-value=1.6e+02 Score=23.90 Aligned_cols=121 Identities=12% Similarity=0.003 Sum_probs=85.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037499 100 ARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVF 179 (262)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 179 (262)
..+.+.|.++-. +.|++-....|..-.+.+...|++++|-++-.........+..|.+.+-..-..-|+..--+.+|
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 467777766553 44555556677777889999999999999988877665588888887777767778888889999
Q ss_pred HHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH
Q 037499 180 DEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ 228 (262)
Q Consensus 180 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 228 (262)
..+.+.| +.+..-=--+++.-...|+.+-..+.+ ++..+..+..
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl----~e~KL~~SEe 462 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL----KEDKLECSEE 462 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH----HHTCSCCCHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH----hcCCccccHH
Confidence 9998886 345443334566666777776655554 3335555544
No 349
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=37.58 E-value=85 Score=21.76 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFK 250 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 250 (262)
+.....++.+.++.. +-+-.-.-.+|.++.+.|++++|.+++.++... +..... ..+.++..-|--++
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~---------~q~~~~-~~~i~~P~la~lLl 81 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID---------AKHESK-LSNLKTPHLAFDFL 81 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHHH-HHhCCCHHHHHHHH
Confidence 455566666666664 223444456788899999999999999988764 222222 45566665555444
Q ss_pred HH
Q 037499 251 EE 252 (262)
Q Consensus 251 ~~ 252 (262)
.+
T Consensus 82 ~K 83 (192)
T 1ixm_A 82 TF 83 (192)
T ss_dssp HG
T ss_pred HH
Confidence 44
No 350
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=36.87 E-value=50 Score=17.68 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 037499 103 LEHALQVFDEMS 114 (262)
Q Consensus 103 ~~~a~~~~~~~~ 114 (262)
.++|..+-+.+.
T Consensus 22 H~EA~tIA~~L~ 33 (61)
T 3ph0_C 22 HQEAASIADWLA 33 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334443333333
No 351
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.45 E-value=70 Score=19.20 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHH
Q 037499 171 RLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDE 209 (262)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (262)
..++|.++++.+...| ...|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHH
Confidence 4455555555555443 2344555555544444433
No 352
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.93 E-value=1.2e+02 Score=21.57 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=30.5
Q ss_pred HHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcC
Q 037499 54 YDLIITKLGRA---KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-----LEHALQVFDEMSSFN 117 (262)
Q Consensus 54 ~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~ 117 (262)
+.-+|+++.++ .+.+.|+-.+.+|.+. |..|.-..-..++.+....|. ...|...++.....|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~-GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG 105 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEA-GEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVG 105 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC
Confidence 33444454443 5666666666666653 444444444444444444332 234444444444445
No 353
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=35.74 E-value=1.6e+02 Score=23.21 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=109.9
Q ss_pred cCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc----CCh--hHHH--------HHHHHHHhcCCCC
Q 037499 19 QKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRA----KMF--DEVQ--------QILHQLKHDTRVV 84 (262)
Q Consensus 19 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~--~~a~--------~~~~~~~~~~~~~ 84 (262)
.-.+..++++...+ ..+.+...|..++..+... ... .+.. +++....++-|..
T Consensus 123 ~~~~~~~l~l~~yL-------------~~E~~y~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lgw~ 189 (419)
T 3rjo_A 123 KLSIEKALDLSLYL-------------KHETEIMPVFQGLNELIPMYKLMEKRDMNEVETQFKAFLIRLLRDLIDKQTWT 189 (419)
T ss_dssp SSCHHHHHHHHGGG-------------GGCCSHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHh-------------cccchHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44678899999888 3455777887777665432 110 1122 2233333333444
Q ss_pred cc-----HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037499 85 PE-----EIIFCNVISFYGRARL---LEHALQVFDEMSSFN----VQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYV 152 (262)
Q Consensus 85 ~~-----~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 152 (262)
++ ...-..++...|..|+ .+.|.+.|+.....+ ++|+... .+...-.+ ..++-..+++.....
T Consensus 190 ~~~~~~~~~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~--~Vy~~~~~--~~~~~~~l~~~y~~s- 264 (419)
T 3rjo_A 190 DEGSVSERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL--AVFAVGAQ--STEGWDFLYSKYQFS- 264 (419)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH--HHHHHHTT--SHHHHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce--eEEeeeeC--CHHHHHHHHHHHhcC-
Confidence 33 2334456777778887 467888888876542 4555422 22111122 234445555666554
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-CCHHHHHHHHH----HHHHhcCCCCCH
Q 037499 153 SPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLE-LRVDEALKLKE----DMMRVYNVKPDA 227 (262)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~----~~~~~~~~~p~~ 227 (262)
.+..--..++.+++...+.+...++++......+-........+ .+.... -..+.|.+++. .+.+.++ ++.
T Consensus 265 -~~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~~~-~~v~~n~~g~~~aw~fl~~nw~~l~~~~~--~~~ 340 (419)
T 3rjo_A 265 -LSSTEKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQIL-TLIGRNPVGYPLAWQFLRKNWNKLVQKFE--LGS 340 (419)
T ss_dssp -CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHHHH-HHHHTSTTTHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred -CCHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHHHH-HHHhcCcchHHHHHHHHHHHHHHHHHHhC--cCc
Confidence 45555678889999999999999999888876532233333333 333322 23445555543 3444333 333
Q ss_pred HHHHHHHHHHHh
Q 037499 228 QVFASLIKGLCA 239 (262)
Q Consensus 228 ~~~~~l~~~~~~ 239 (262)
..+..++.....
T Consensus 341 ~~~~~~i~~~~~ 352 (419)
T 3rjo_A 341 SSIAHMVMGTTN 352 (419)
T ss_dssp HHHHHHHHHTTT
T ss_pred hhHHHHHHHHhh
Confidence 556666655443
No 354
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=35.60 E-value=2.4e+02 Score=25.17 Aligned_cols=162 Identities=9% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 037499 55 DLIITKLGRAKM---FDEVQQILHQLKHDT-RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLN 130 (262)
Q Consensus 55 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 130 (262)
..++...+..|. .+.|.+.|+...... +.+..+..-..+...-.+.|..+.-..+++.... ..+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~---~~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ---AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH---CCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhCC
Q 037499 131 AMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKR---RLQPTLVTFGTLIYGLCLELR 206 (262)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~ 206 (262)
+++...+.+...++++....... ........+..........+.|++.+..=.+. ........+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHH
Q 037499 207 VDEALKLKEDMMR 219 (262)
Q Consensus 207 ~~~a~~~~~~~~~ 219 (262)
-++-.+-++...+
T Consensus 847 t~~~~~~~~~f~~ 859 (909)
T 4fke_A 847 SEFELQQLEQFKK 859 (909)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
No 355
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.21 E-value=56 Score=22.35 Aligned_cols=46 Identities=7% Similarity=0.059 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 037499 88 IIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLT 134 (262)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 134 (262)
..++.++.+++.-.-.+.++-++.+....| ..+..+|-.-++.+++
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaR 157 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELAR 157 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666655 4555555555554444
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.20 E-value=56 Score=20.83 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=18.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 95 SFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
..+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333334444455555555554433333333333334444443
No 357
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.06 E-value=2.1e+02 Score=24.24 Aligned_cols=177 Identities=7% Similarity=-0.030 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499 65 KMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 65 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
.+.+.|...+....+...+.+... ....+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 367888888888865433333222 22233333334453556666666654432 33333333444455779999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHC------------CCCC-------c---hH-----HHH
Q 037499 143 DLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKR------------RLQP-------T---LV-----TFG 195 (262)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------------~~~~-------~---~~-----~~~ 195 (262)
..|+.|...........--+..++...|+.++|..+|+.+... |.++ + .. .-.
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH
Confidence 9998886643334444455666778889999999988886541 2111 0 00 011
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037499 196 TLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 196 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 247 (262)
.-+..+...|....|...+..+.+ .. +......+.......|..+.++
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~--~~--~~~~~~~la~~a~~~~~~~~~v 433 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVK--SK--SKTEQAQLARYAFNNQWWDLSV 433 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT--TC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCChHHHH
Confidence 223456677888888888877764 22 2222233333344455555444
No 358
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=34.97 E-value=98 Score=20.48 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=8.2
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 037499 230 FASLIKGLCAVGELSLALGFK 250 (262)
Q Consensus 230 ~~~l~~~~~~~g~~~~a~~~~ 250 (262)
|.-++..+.+...+-+....+
T Consensus 159 ~~Ef~~~~~~~~~~~~~l~~~ 179 (183)
T 1s6c_A 159 LDEFLESXQEDDNIMRSLQLF 179 (183)
T ss_dssp HHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHh
Confidence 344444333333333333333
No 359
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.89 E-value=70 Score=22.76 Aligned_cols=23 Identities=0% Similarity=-0.175 Sum_probs=11.4
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCC
Q 037499 98 GRARLLEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~ 120 (262)
++.|+.+....+++.+.+.|..+
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~ 35 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRL 35 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCc
Confidence 34555555555555544444333
No 360
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.40 E-value=76 Score=19.02 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=8.1
Q ss_pred CChhHHHHHHHHHHHC
Q 037499 170 RRLEDAWKVFDEMLKR 185 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~ 185 (262)
|++-+|.++++..-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 5555555555554444
No 361
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=34.39 E-value=1.5e+02 Score=22.58 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCCCchH--HHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 175 AWKVFDEMLKRRLQPTLV--TFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 175 a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..++---+..-++.|... ++...|..+.+.+++..|..+-+++.+.
T Consensus 189 ~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 236 (325)
T 3mv2_A 189 MLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKI 236 (325)
T ss_dssp HHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 333333333444444332 4455667788888998888888888864
No 362
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=34.18 E-value=92 Score=19.95 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 163 MHGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 163 ~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
-+.|...++.++..++++.+.+. .-.|....-.+++..|. .++.+|...+++..+.
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG--~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYG--RDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHT
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHh--HHHHHHHHHHHHHHHh
Confidence 34556778888888888666322 11344444455555444 4677888888777653
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.11 E-value=85 Score=22.04 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcCCCCccHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhc
Q 037499 67 FDEVQQILHQLKHDTRVVPEEIIFC-----NVISFYGRARLLEHALQVFDEMSSF 116 (262)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (262)
.+.|+.+|+.+.+.. .+-..... ..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 567999999988753 21112222 2345789999999999999997654
No 364
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.07 E-value=1.2e+02 Score=21.28 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhcCC
Q 037499 56 LIITKLGRA---KMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL-----LEHALQVFDEMSSFNV 118 (262)
Q Consensus 56 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 118 (262)
-+|+++.++ .+.+.|+-.+.+|.+. | .|.-..-..++.+....|. ...|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~-G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEA-G-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344444443 6677777777777764 5 4544444444555544443 2344455555555554
No 365
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.06 E-value=1.1e+02 Score=22.88 Aligned_cols=13 Identities=8% Similarity=0.187 Sum_probs=5.6
Q ss_pred HHHHHHHcCCCCC
Q 037499 249 FKEEMVRNKIEMD 261 (262)
Q Consensus 249 ~~~~m~~~g~~pd 261 (262)
+.+-+++.|-.||
T Consensus 316 iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 316 LVKVLLSHGAKED 328 (337)
T ss_dssp HHHHHHHTTCCC-
T ss_pred HHHHHHHCcCCCC
Confidence 3344455554443
No 366
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.84 E-value=1.9e+02 Score=23.16 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=18.9
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037499 83 VVPEEIIFCNVISFYGRARLLEHALQVFDEMSS 115 (262)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (262)
+..+......++.. ..|+..+++.+++.+..
T Consensus 190 ~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 190 IVLPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp EECCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 34455555555554 45777777777776654
No 367
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=32.38 E-value=1.1e+02 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037499 127 TLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 127 ~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
..|.++.+.|++++|.++..++.
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666655555543
No 368
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=32.20 E-value=1.8e+02 Score=22.74 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037499 123 KSFNTLLNAMLTCGK--IDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLK 184 (262)
Q Consensus 123 ~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 184 (262)
.+|..++.-+..-.+ .+++..+++.+.....++...=..++..+.|....++...+.+-|++
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~ 87 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLS 87 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 355555555544433 45666666666554444444444444444555555555555555554
No 369
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=32.05 E-value=58 Score=20.74 Aligned_cols=51 Identities=24% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHH
Q 037499 160 NILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKL 213 (262)
Q Consensus 160 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 213 (262)
--.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 334445555666666666666666554 445555555555555555554443
No 370
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.00 E-value=54 Score=21.21 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCG 136 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 136 (262)
+..+...+..-.|.++++.+.+.+...+..|.---+..+.+.|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333344444445555555554443333333333334444333
No 371
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.79 E-value=1.3e+02 Score=20.79 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
+...++.|+.+....+++.-...-..++..-++ .+...+..|+.+-+..+++.-......+...++.+ ...+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-HIAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHH-HHHHHcCHHH
Confidence 455667899988888877643211122222233 33444566776655544443111111333333333 3334556654
Q ss_pred HHHHHHHHHHHCCCCCch---HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChhHHH
Q 037499 174 DAWKVFDEMLKRRLQPTL---VTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAVGELSLAL 247 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~ 247 (262)
+++.+.+.|..++. .-.+.+ ...+..|+.+-+..++ +. |..++.. -.+ .+...+..|+.+
T Consensus 88 ----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~-g~~~~~~~~~g~t-~L~~A~~~~~~~--- 153 (231)
T 3aji_A 88 ----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIAVMLL----EG-GANPDAKDHYDAT-AMHRAAAKGNLK--- 153 (231)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHH----HT-TCCTTCCCTTSCC-HHHHHHHHTCHH---
T ss_pred ----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHH----Hc-CCCCCCcCCCCCc-HHHHHHHcCCHH---
Confidence 44455555554432 222333 3445677776554444 32 4444321 122 233334556654
Q ss_pred HHHHHHHHcCCCCC
Q 037499 248 GFKEEMVRNKIEMD 261 (262)
Q Consensus 248 ~~~~~m~~~g~~pd 261 (262)
+++.+.+.|..++
T Consensus 154 -~v~~Ll~~g~~~~ 166 (231)
T 3aji_A 154 -MVHILLFYKASTN 166 (231)
T ss_dssp -HHHHHHHTTCCSC
T ss_pred -HHHHHHhcCCCcc
Confidence 3444455666554
No 372
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.66 E-value=50 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.4
Q ss_pred HHHHhcCChhHHHHHHHH
Q 037499 59 TKLGRAKMFDEVQQILHQ 76 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~ 76 (262)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 344455555555555554
No 373
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=31.58 E-value=2.9e+02 Score=26.02 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHh---------------cCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 037499 126 NTLLNAMLT---------------CGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP 189 (262)
Q Consensus 126 ~~ll~~~~~---------------~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 189 (262)
+.|+.++++ ....++-.+.|.++.+.-. .|.......+.-...++++..|++++.++.+. +|
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~ 1315 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cc
Q ss_pred chHHHHHHHHHHHhhC
Q 037499 190 TLVTFGTLIYGLCLEL 205 (262)
Q Consensus 190 ~~~~~~~li~~~~~~g 205 (262)
+...|..++..+...|
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
No 374
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.50 E-value=1.2e+02 Score=20.40 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMS 114 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (262)
...++.-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4456666777777777777777765
No 375
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.14 E-value=83 Score=18.18 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037499 45 KPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKH 79 (262)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (262)
.+.+|++.||+-+..++.+..-...++.+.+++..
T Consensus 30 PnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy~ 64 (81)
T 2ko4_A 30 PNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVYK 64 (81)
T ss_dssp SSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56678888888887766666556666666665543
No 376
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=30.02 E-value=1.9e+02 Score=22.27 Aligned_cols=50 Identities=24% Similarity=0.123 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037499 207 VDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGELSLALGFKEEMVRNKI 258 (262)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 258 (262)
.+++..+++.+.+ |-.++...=..|+..+.+.-..++...+.+-|++.+.
T Consensus 21 ~eEa~~~~~~il~--G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~ 70 (346)
T 4hkm_A 21 HDEMVDLMRQIMR--GEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSR 70 (346)
T ss_dssp HHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 3455555555554 3344444433334344444455555555555555543
No 377
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=29.99 E-value=2.4e+02 Score=23.35 Aligned_cols=35 Identities=3% Similarity=-0.023 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037499 226 DAQVFASLIKGLCAVGELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 226 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 260 (262)
+......|-+.|.+.|++-+|-+++..+...+..+
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~i 250 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNFDI 250 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSSCC
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCCCC
Confidence 44566777788999999999999999998875543
No 378
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.63 E-value=87 Score=22.90 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=53.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChh
Q 037499 94 ISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLE 173 (262)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 173 (262)
+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+..+++.-......+...++.+ ...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHH
Confidence 344456788766555544 34333332223345556677887655555543111111333333333 3345667765
Q ss_pred HHHHHHHHHHHCCCCCchH---HHHHHHHHHHhhCCHHHHHHHH
Q 037499 174 DAWKVFDEMLKRRLQPTLV---TFGTLIYGLCLELRVDEALKLK 214 (262)
Q Consensus 174 ~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 214 (262)
-+..+++ .|..++.. -+.+.+...+..|+.+-+..++
T Consensus 110 ~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 110 TVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp HHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5544444 45444432 2123444556677776544444
No 379
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.44 E-value=1.5e+02 Score=20.86 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCChhH
Q 037499 98 GRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-----IDRMTDLFQIMEKYVSPDACS 158 (262)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 158 (262)
.+-.+++.|+-++-+|.+.| .|....-..++.+.-.-|. ..-|...++.....|.|....
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 89 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARI 89 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 35689999999999999999 7766666666666665554 345555666666666655443
No 380
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=29.40 E-value=1.4e+02 Score=24.03 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--------hHHHHHH-HHHHHhhCCHHHHHHHHHHHHH
Q 037499 158 SYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPT--------LVTFGTL-IYGLCLELRVDEALKLKEDMMR 219 (262)
Q Consensus 158 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--------~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~ 219 (262)
..+.++..|.+.++..-+..+++.+...+..|+ ..+|.-. .+.+...+++.+|.+.+....+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 357778888999999999999888877655322 2233322 2334556667666665554433
No 381
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=28.66 E-value=51 Score=15.26 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=12.7
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 037499 234 IKGLCAVGELSLALGFKEEMV 254 (262)
Q Consensus 234 ~~~~~~~g~~~~a~~~~~~m~ 254 (262)
+.-|.+.|..++|..+-..+.
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 445666677777666655543
No 382
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.64 E-value=2.1e+02 Score=22.26 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhcCCCC
Q 037499 53 HYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPEEIIFCNVISFYGRARL--LEHALQVFDEMSSFNVQR 120 (262)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 120 (262)
.-..++.-|...|+.++|.+.++++... . .-.......++......++ .+.+-.++..+...++-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p-~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAP-K-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCC-G-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCc-h-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 4567889999999999999999998531 0 0122333444444444333 245666677777655433
No 383
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.55 E-value=1.5e+02 Score=20.73 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=42.1
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCChh
Q 037499 92 NVISFYG---RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-----IDRMTDLFQIMEKYVSPDAC 157 (262)
Q Consensus 92 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 157 (262)
.+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-.-|. ..-|...++.....|.|...
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 82 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGE 82 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHH
Confidence 3445543 567999999999999999866665555555555555443 34555556666665554433
No 384
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=28.06 E-value=1.4e+02 Score=20.08 Aligned_cols=59 Identities=5% Similarity=0.130 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCh--hHHHHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRL--EDAWKVFDEML 183 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~m~ 183 (262)
....++.-|...|+.++|...++++.... ........++......++. +.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~-~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSG-GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35667888889999999999999876322 2222333334333333322 33455666653
No 385
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=27.15 E-value=1.4e+02 Score=22.73 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 178 VFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 178 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
+++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 4455556677777777777777777666777777777777665
No 386
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.99 E-value=1.4e+02 Score=20.56 Aligned_cols=179 Identities=11% Similarity=-0.031 Sum_probs=79.3
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcc---HH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTRVVPE---EI 88 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 88 (262)
.+...+..|+.+-+.-+++.-.... ...+... .+.+...+..|+.+-+..+++. |..++ ..
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~----------~~~~~~~-~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~ 108 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVD----------QLGGDLN-STPLHWATRQGHLSMVVQLMKY-----GADPSLIDGE 108 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT----------CCBTTTT-BCHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcch----------hhcCCcC-CChhHHHHHcCCHHHHHHHHHc-----CCCCcccCCC
Confidence 4556677888888888887653211 0111111 1234455566776655444432 22222 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHH
Q 037499 89 IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTV---KSFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMH 164 (262)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~ 164 (262)
-. +.+...+..|+.+-+. .+.+.|..++. .-.+.+..+.. .+...+..+++........ .+...-.+.+.
T Consensus 109 g~-t~l~~A~~~~~~~~~~----~Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~ 182 (240)
T 3eu9_A 109 GC-SCIHLAAQFGHTSIVA----YLIAKGQDVDMMDQNGMTPLMWAAY-RTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182 (240)
T ss_dssp SC-CHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH-HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CC-CHHHHHHHcCHHHHHH----HHHhcCCCccccCCCCCcHHHHHHH-hCChHHHHHHHHhcCCCcchhhccCCCcHHH
Confidence 11 2233445567765443 34444433322 22233433333 3433334444433222111 22211123344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCchHHH--HHHHHHHHhhCCHHHHHHHHHH
Q 037499 165 GCVVSRRLEDAWKVFDEMLKRRLQPTLVTF--GTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 216 (262)
..+..|+.+-+..++ +.|..++.... .+.+....+.|+.+-+..+++.
T Consensus 183 ~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 183 WAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 555677766444444 44544432211 1233445667777665555544
No 387
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=26.94 E-value=1.7e+02 Score=22.24 Aligned_cols=112 Identities=7% Similarity=0.019 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcC--CCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037499 68 DEVQQILHQLKHDT--RVVP---EEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMT 142 (262)
Q Consensus 68 ~~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 142 (262)
+.|..+|..+.... .+.+ ........+..+.+.-++ ++++.+.+.|+.|...++.-++..+.+.=.++.+.
T Consensus 189 ~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~l 264 (345)
T 2qfz_A 189 ADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTI 264 (345)
T ss_dssp HHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHH
T ss_pred HHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHH
Confidence 34555666665421 1222 222233334444444443 46677778888888888888888888888899999
Q ss_pred HHHHHHHhcCC-CC-hhHH--HHHHHHH----HhcCChhHHHHHHHHHH
Q 037499 143 DLFQIMEKYVS-PD-ACSY--NILMHGC----VVSRRLEDAWKVFDEML 183 (262)
Q Consensus 143 ~~~~~~~~~~~-~~-~~~~--~~l~~~~----~~~g~~~~a~~~~~~m~ 183 (262)
++|+.+...+. .. ...+ .+++..+ ....++++...+++.+.
T Consensus 265 rlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 265 RLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 99999988765 22 2222 2333222 23577888877776543
No 388
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=26.03 E-value=1.8e+02 Score=20.64 Aligned_cols=111 Identities=12% Similarity=0.122 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
.+.+..++..+.+.+. .|...-...+....+.+.+ ....+-.++...|+.++ +....+..+......+.|..++++
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~--~I~~al~~~~~~~e~e~a~~l~~K 168 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES--DIDDALTQFTPEVQAELAKKLALK 168 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH--HHHHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH--HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556677788888777 4444445566665553332 45677788888888643 222222221111223455666665
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHH
Q 037499 217 MMRVYNVKPDAQVFASLIKGLCAVGE-LSLALGFKE 251 (262)
Q Consensus 217 ~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~ 251 (262)
-.....-.++.....-++..+.+.|- .+.+..+++
T Consensus 169 k~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 169 LFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 54432222334456777777777774 444444443
No 389
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.96 E-value=1.8e+02 Score=20.63 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=45.9
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCChhH
Q 037499 90 FCNVISFYG---RARLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGK-----IDRMTDLFQIMEKYVSPDACS 158 (262)
Q Consensus 90 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~ 158 (262)
+..+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-.-|. ..-|...++.....|.|....
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLF 111 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 444555554 468999999999999999976766555666666555553 345666666666666655443
No 390
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.48 E-value=83 Score=16.63 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=5.6
Q ss_pred hhHHHHHHHHH
Q 037499 243 LSLALGFKEEM 253 (262)
Q Consensus 243 ~~~a~~~~~~m 253 (262)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555444
No 391
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=25.27 E-value=1.3e+02 Score=18.99 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 037499 209 EALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGEL 243 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 243 (262)
+..+.+..+-+......+...|..++..+...+++
T Consensus 73 ~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~~~~ 107 (120)
T 1u9p_A 73 EVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI 107 (120)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhc
Confidence 45555666655556677888888888888776664
No 392
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.26 E-value=1.5e+02 Score=22.38 Aligned_cols=156 Identities=11% Similarity=0.035 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh-hHHHH
Q 037499 85 PEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS--FNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDA-CSYNI 161 (262)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 161 (262)
.|..-.+.|. ..+..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+..+++.-. ..+. ..++
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~~g~t- 86 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQK- 86 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC---CCCCBTTBC-
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC---CccccCCCC-
Confidence 4454455544 4456788766555554 444443221 1223445566777765555544322 1222 2222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCch--------------------HHHHHHHHHHHhhC--CHHHHHHHHHHHHH
Q 037499 162 LMHGCVVSRRLEDAWKVFDEMLKRRLQPTL--------------------VTFGTLIYGLCLEL--RVDEALKLKEDMMR 219 (262)
Q Consensus 162 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~~~~ 219 (262)
.+...+..|+.+-+..+++.....|..++. .-.+.|. ..+..| +.+-+. .+.+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~~~v~----~Ll~ 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH-WCVGLGPEYLEMIK----ILVQ 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHH-HHHHSCGGGHHHHH----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHH-HHHHcCCchHHHHH----HHHH
Confidence 344455778888877777776665665554 1234443 445566 554333 3334
Q ss_pred hcCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037499 220 VYNVKPDAQVF--ASLIKGLCAVGELSLALGFKEEMVRNKIE 259 (262)
Q Consensus 220 ~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 259 (262)
. |..++.... .+.+...+..|+.+- ++.+.+.|..
T Consensus 162 ~-ga~~~~~d~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~ 198 (364)
T 3ljn_A 162 L-GASPTAKDKADETPLMRAMEFRNREA----LDLMMDTVPS 198 (364)
T ss_dssp H-TCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHCSC
T ss_pred c-CCCCcccCCCCCCHHHHHHHcCCHHH----HHHHHhcccc
Confidence 4 777776531 223334456666543 4444444433
No 393
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.21 E-value=2.6e+02 Score=21.89 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----------------hhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh------
Q 037499 93 VISFYGRARLLEHALQVFDEM----------------SSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEK------ 150 (262)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~----------------~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------ 150 (262)
++.++....+.+++.+.++++ .+............+...|...|+.++|..++++...
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred -cCC-CChhHHHHHHHHHHhcCChhHHHHHH
Q 037499 151 -YVS-PDACSYNILMHGCVVSRRLEDAWKVF 179 (262)
Q Consensus 151 -~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 179 (262)
..+ .....|......|...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 394
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.82 E-value=3e+02 Score=22.50 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHH
Q 037499 137 KIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAW 176 (262)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 176 (262)
.++.|...|.......|.+...||.+.-.+...|+.-.|.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 3444555555544444444444544444444444433333
No 395
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=23.74 E-value=1.5e+02 Score=19.06 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=10.2
Q ss_pred HHHHhcCChhHHHHHHHH
Q 037499 59 TKLGRAKMFDEVQQILHQ 76 (262)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~ 76 (262)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 8 HQLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 344556666666555544
No 396
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=23.67 E-value=2.1e+02 Score=21.85 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=49.7
Q ss_pred HHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCC-HHHH--HHHHHH----HHhcCChhHHHHH
Q 037499 177 KVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPD-AQVF--ASLIKG----LCAVGELSLALGF 249 (262)
Q Consensus 177 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~--~~l~~~----~~~~g~~~~a~~~ 249 (262)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+... |.... ...| .+++.. .....+++++..+
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~-g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~ 308 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE-PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS-TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 35555667788888888888888888888899999999998865 43322 2222 222222 2234677777766
Q ss_pred HHHH
Q 037499 250 KEEM 253 (262)
Q Consensus 250 ~~~m 253 (262)
+..+
T Consensus 309 L~~~ 312 (345)
T 2qfz_A 309 LQNL 312 (345)
T ss_dssp HTSC
T ss_pred HHcC
Confidence 6543
No 397
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.55 E-value=2.4e+02 Score=21.29 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCC
Q 037499 194 FGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIKGLCAVGE--LSLALGFKEEMVRNKIE 259 (262)
Q Consensus 194 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~ 259 (262)
...++.-|...|+.++|.+.++++..- .+. ...+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG-GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC-cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 457788899999999999999998421 111 23445555556655433 45566777777766653
No 398
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=23.39 E-value=81 Score=18.89 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCCCC
Q 037499 245 LALGFKEEMVRNKIEMD 261 (262)
Q Consensus 245 ~a~~~~~~m~~~g~~pd 261 (262)
...+-.++++..|+.||
T Consensus 21 ~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 21 EIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 34556677778888887
No 399
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.30 E-value=2.4e+02 Score=21.91 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 037499 12 LASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQ 76 (262)
Q Consensus 12 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 76 (262)
.+...+..|+.+-+..+++.-.. ....+... .+.+...+..|+.+-+..+++.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~-----------~~~~~~~~-~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGAS-----------PNVSNVKV-ETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-----------SCCSSSCC-CCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCC-----------CCCCCCCC-CCHHHHHHHcCCHHHHHHHHhC
Confidence 34455678899888888876321 11111111 1234456677887766666653
No 400
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=23.12 E-value=1.1e+02 Score=20.06 Aligned_cols=81 Identities=9% Similarity=0.004 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHC-CCCC---chHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHh-cCChh
Q 037499 172 LEDAWKVFDEMLKR-RLQP---TLVTFGTLIYGLCLELRVDEALKLKEDMMRVYNVKPDAQVFASLIK--GLCA-VGELS 244 (262)
Q Consensus 172 ~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~-~g~~~ 244 (262)
++.++++.+...+. |..+ ++.++.-.++...+.|-++.. +.|..|....+. .+++|+.... .|.. ...+.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~--tvH~Y~e~~a~~v~~~I~~~l~ 130 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNI--TSHTYDQEKAMAVYAQIDDFLI 130 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTT--GGGTTSHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhH--hcccccHhhHHHHHHHHHHHHH
Confidence 56677777766654 6554 367888888999999988766 667777665333 3445543322 2222 12455
Q ss_pred HHHHHHHHHHH
Q 037499 245 LALGFKEEMVR 255 (262)
Q Consensus 245 ~a~~~~~~m~~ 255 (262)
...++.+.+.+
T Consensus 131 ~f~~l~~~l~~ 141 (146)
T 1jog_A 131 ESSFLLEQLRQ 141 (146)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 55566665554
No 401
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.02 E-value=1.3e+02 Score=18.06 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 193 TFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 193 ~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
.+.--...+.+.|++++|++..+..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445556677778888777776554
No 402
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=22.76 E-value=4.1e+02 Score=23.69 Aligned_cols=164 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC---CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh
Q 037499 50 NLLHYDLIITKLGRAKM---FDEVQQILHQLKHDT---RVVPEEIIFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK 123 (262)
Q Consensus 50 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (262)
+...-..++...|..|. .+.|.+.|++..... .++|+.....-.... |.-+.-..+++...+ ..+..
T Consensus 679 ~~~lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~----g~~~~~~~l~~~y~~---~~~~~ 751 (897)
T 2xdt_A 679 ERMLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----QSTEGWDFLYSKYQF---SLSST 751 (897)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT----TSHHHHHHHHHHHTT---CCCHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec----CCHHHHHHHHHHHHc---cCCHH
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHH---HHHCCCCCchHHHHHHHH
Q 037499 124 SFNTLLNAMLTCGKIDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDE---MLKRRLQPTLVTFGTLIY 199 (262)
Q Consensus 124 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~---m~~~~~~~~~~~~~~li~ 199 (262)
--..++.+++...+.....++++....... ........+..........+.|++.+.. -.......+..++..++.
T Consensus 752 ek~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~ 831 (897)
T 2xdt_A 752 EKSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVM 831 (897)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Q ss_pred HHHhhCCHHHHHHHHHHHHHh
Q 037499 200 GLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 200 ~~~~~g~~~~a~~~~~~~~~~ 220 (262)
.....-.-++-.+-++...+.
T Consensus 832 ~~~~~~~t~~~~~~~~~f~~~ 852 (897)
T 2xdt_A 832 GTTNQFSTRTRLEEVKGFFSS 852 (897)
T ss_dssp HTTTTCCSHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHh
No 403
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.66 E-value=3.2e+02 Score=22.36 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 037499 101 RLLEHALQVFDEMSSFNVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCV 167 (262)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (262)
..++.|..+|.+..... |-+...||-|.-.....|+.-+|.-.|-+......|-..+..++...+.
T Consensus 166 ~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp TCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34567777777766654 4455667777666666666666665555554444455555555555554
No 404
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.53 E-value=1.3e+02 Score=17.71 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=13.9
Q ss_pred CChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 170 RRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
...++|.++++.+...| ...|..++.++...+
T Consensus 50 t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~ 81 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKD----NDSYVSFYNALLHEG 81 (94)
T ss_dssp SHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcC
Confidence 34444555554444332 234444444444443
No 405
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=22.34 E-value=14 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=8.8
Q ss_pred ChhHHHHHHHHHHHcCCCC
Q 037499 242 ELSLALGFKEEMVRNKIEM 260 (262)
Q Consensus 242 ~~~~a~~~~~~m~~~g~~p 260 (262)
+++.|...|.+. +..|+|
T Consensus 34 d~~~A~~~F~~~-~~~IP~ 51 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPR 51 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCH
T ss_pred CHHHHHHHHHHH-HcCCCH
Confidence 455555555554 333444
No 406
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=21.96 E-value=1.9e+02 Score=19.79 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhC
Q 037499 154 PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLEL 205 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 205 (262)
|....++.++..++...-.+.++..+.+....|. .+..+|..-++.+++..
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQ 159 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 5555566666666666666777777777766653 45566666666555543
No 407
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.78 E-value=2.1e+02 Score=24.07 Aligned_cols=84 Identities=8% Similarity=0.044 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-----HhcCCCCc---------------c-HHHHHHHHHHHHhcCCHHHHH
Q 037499 49 YNLLHYDLIITKLGRAKMFDEVQQILHQL-----KHDTRVVP---------------E-EIIFCNVISFYGRARLLEHAL 107 (262)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~---------------~-~~~~~~l~~~~~~~~~~~~a~ 107 (262)
-|..+|...++-|...|......++++.- .+.-|... + ...+..++...++.|++.+++
T Consensus 26 ~d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~igWdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~lcnPrEvi 105 (596)
T 4f52_E 26 EDFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMGWNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVKLCNPKELL 105 (596)
T ss_dssp ---CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTGGGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHHHSCGGGHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcCcccHHHHHHHHhhccccccchhHHHHHHHHHHHhCCHHHHH
Confidence 58899999999999999999999988762 22112111 1 134555677778888887665
Q ss_pred HHH-HHHhhcCCCCChhhHHHHHHHH
Q 037499 108 QVF-DEMSSFNVQRTVKSFNTLLNAM 132 (262)
Q Consensus 108 ~~~-~~~~~~~~~~~~~~~~~ll~~~ 132 (262)
--+ +.+....-.-....+..++.++
T Consensus 106 l~llE~le~~~~~~~~~~f~~LL~~L 131 (596)
T 4f52_E 106 LGLLELIEEPSGKQISQSILLLLQPL 131 (596)
T ss_dssp HHHGGGGTSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHH
Confidence 433 3333222111124455555544
No 408
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=21.54 E-value=2.3e+02 Score=20.44 Aligned_cols=87 Identities=7% Similarity=-0.060 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHhc-CChhHHHHH-----------HHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Q 037499 154 PDACSYNILMHGCVVS-RRLEDAWKV-----------FDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRVY 221 (262)
Q Consensus 154 ~~~~~~~~l~~~~~~~-g~~~~a~~~-----------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 221 (262)
|....|+..+...+.. |++..+... .+.+...+..+....|...|..|. ..+..+.+.+..+.++.
T Consensus 127 p~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~--~ef~~~v~~~~~~ld~~ 204 (248)
T 3no6_A 127 PSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS--TEMDELVDVFDQLMDRL 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH--HHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5556677776666666 776554332 233344432223456788888887 55566655555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 037499 222 NVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 222 ~~~p~~~~~~~l~~~~~~~g~ 242 (262)
+...+..-...+...+.+.-+
T Consensus 205 ~~~~s~~~~~~l~~~F~~a~~ 225 (248)
T 3no6_A 205 TKHCSETEKKEIKENFLQSTI 225 (248)
T ss_dssp TTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHH
Confidence 444556666666666665433
No 409
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.47 E-value=1.8e+02 Score=19.20 Aligned_cols=99 Identities=5% Similarity=-0.128 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhCCHHHHHHHHHH
Q 037499 138 IDRMTDLFQIMEKYVS-PDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQPTLVTFGTLIYGLCLELRVDEALKLKED 216 (262)
Q Consensus 138 ~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 216 (262)
.+.+..++..+.+.+. .|...-...+....+.| .....+-.++...|+.++ +....+..+. ....+.|..++.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~--~i~~al~~~~-~d~~~~a~~l~~k 120 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE--ATEKAMREAD-IDWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH--HHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH--HHHHHHHHcC-HhHHHHHHHHHHH
Confidence 4456667777777777 44444455566655543 245677778888887543 2333333221 1233445555543
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037499 217 MMRVYNVKPDAQVFASLIKGLCAVGE 242 (262)
Q Consensus 217 ~~~~~~~~p~~~~~~~l~~~~~~~g~ 242 (262)
-... ..+++.....-++..+.+.|-
T Consensus 121 k~~~-~~~~~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 121 KYGE-PLPTVFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHCS-SCCCSHHHHHHHHHHHHHTTC
T ss_pred HcCC-CCCCCHHHHHHHHHHHHHCCC
Confidence 3221 122344555666666666664
No 410
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=21.37 E-value=1.7e+02 Score=21.61 Aligned_cols=55 Identities=7% Similarity=0.101 Sum_probs=34.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037499 95 SFYGRARLLEHALQVFDEMSSF-NVQRTVKSFNTLLNAMLTCGKIDRMTDLFQIME 149 (262)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 149 (262)
..|....++.....++..|... .-.|+......++++|.+.-+-..|.+.++...
T Consensus 181 YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 3444445555556666666532 225677777777888888777777777776644
No 411
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=21.16 E-value=1.7e+02 Score=22.75 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=87.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChh--hHHHHHHH
Q 037499 56 LIITKLGRAKMFDEVQQILHQLKHDTRVVPEEI--IFCNVISFYGRARLLEHALQVFDEMSSFNVQRTVK--SFNTLLNA 131 (262)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~ 131 (262)
+.+...+..|+.+-+..+++. |..++.. ...+.+...+..|+.+-+.-+++ .|..++.. .-.+.+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~-----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT-----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHH
Confidence 455677788888776666653 3444321 11234455567788765555544 34333221 11234455
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---chHHHHHHHHHHHhhCCHH
Q 037499 132 MLTCGKIDRMTDLFQIMEKYVSPDACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---TLVTFGTLIYGLCLELRVD 208 (262)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~ 208 (262)
.+..|+.+-+..+++.-......+....+. +...+..|+.+.+..+++ .+..+ +..-.+. +...+..|+.+
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~-L~~A~~~g~~~ 160 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLE----KEASQACMTKKGFTP-LHVAAKYGKVR 160 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCCH-HHHHHHcCCHH
Confidence 567787765555554321111123322333 334456677765555544 33322 2222333 34456678876
Q ss_pred HHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 037499 209 EALKLKEDMMRVYNVKPDAQ---VFASLIKGLCAVGELSLALGFKEEMVRNKIEMD 261 (262)
Q Consensus 209 ~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~pd 261 (262)
-+..++ +. +..++.. ..+ .+...+..|+.+ +++.+.+.|..|+
T Consensus 161 ~v~~Ll----~~-g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 161 VAELLL----ER-DAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPH 206 (437)
T ss_dssp HHHHHH----HT-TCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSC
T ss_pred HHHHHH----hC-CCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCC
Confidence 554444 33 4444321 122 233345566654 4455556665554
No 412
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.80 E-value=2.1e+02 Score=20.45 Aligned_cols=17 Identities=6% Similarity=-0.252 Sum_probs=9.2
Q ss_pred HHHHhhCCHHHHHHHHH
Q 037499 199 YGLCLELRVDEALKLKE 215 (262)
Q Consensus 199 ~~~~~~g~~~~a~~~~~ 215 (262)
...+..|+.+-+..+++
T Consensus 153 ~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 153 SLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 34456677765544443
No 413
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.75 E-value=2.1e+02 Score=19.62 Aligned_cols=187 Identities=7% Similarity=-0.063 Sum_probs=84.2
Q ss_pred HHHHhhcCChHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCccHHH
Q 037499 13 ASLLRLQKDPKLALQLFKNPNPNPNNTEAQPLKPFRYNLLHYDLIITKLGRAKMFDEVQQILHQLKHDTR---VVPEEII 89 (262)
Q Consensus 13 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~ 89 (262)
+...++.|+.+....+++.-... ....|..-++ .+...+..|+.+-+..+++.-..... ...+..-
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~----------~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g 75 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCE----------VHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEG 75 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSC----------TTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCC----------cccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCC
Confidence 44556788888888888763111 1111222222 34455667887777766664322100 0011111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChhh---------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037499 90 FCNVISFYGRARLLEHALQVFDEMSSFNVQRTVKS---------------FNTLLNAMLTCGKIDRMTDLFQIMEKYVSP 154 (262)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (262)
.+ .+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+-+..+++.-......
T Consensus 76 ~t-~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 150 (232)
T 2rfa_A 76 QT-ALHIAVINQNVNLVRAL----LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQ 150 (232)
T ss_dssp CC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred cC-HHHHHHHcCCHHHHHHH----HhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence 12 23334456776544433 44443333210 122333344556655444443321110012
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------chHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 037499 155 DACSYNILMHGCVVSRRLEDAWKVFDEMLKRRLQP---------TLVTFGTLIYGLCLELRVDEALKLKEDM 217 (262)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~ 217 (262)
|..-. +.+...+..|+.+-+..+++.+.+.|..+ |..-.+. +...++.|+.+-+..+++.-
T Consensus 151 d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 151 DSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 22222 22334456667766666666666665432 2222222 23334556665555555443
No 414
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=20.68 E-value=1.5e+02 Score=17.81 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=32.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-CCCCchHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 037499 164 HGCVVSRRLEDAWKVFDEMLKR-RLQPTLVTFGTLIYGLCLELRVDEALKLKEDMMRV 220 (262)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 220 (262)
..|...++.+...+++..+.+. .-.|....=.+..+.|. .+..+|...+++..+.
T Consensus 18 r~~f~~~n~~~m~~~L~pLh~~l~~~peT~~E~sF~~~fG--~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 18 RLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYG--RDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 4466777888888887766543 11244333334444433 3677777777777654
Done!