Query 037501
Match_columns 438
No_of_seqs 317 out of 1670
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02204 diacylglycerol kinase 100.0 4.1E-79 9E-84 643.9 40.3 420 1-438 108-534 (601)
2 KOG1115 Ceramide kinase [Lipid 100.0 9.7E-73 2.1E-77 559.2 18.1 330 1-437 109-438 (516)
3 PLN02958 diacylglycerol kinase 100.0 7.5E-58 1.6E-62 481.7 35.6 318 14-438 74-398 (481)
4 KOG1116 Sphingosine kinase, in 100.0 7.2E-51 1.6E-55 422.5 22.1 310 47-437 174-502 (579)
5 PRK11914 diacylglycerol kinase 100.0 2.9E-43 6.3E-48 351.6 25.6 235 51-437 7-243 (306)
6 PRK13059 putative lipid kinase 100.0 2.5E-42 5.5E-47 343.6 25.9 228 52-437 1-230 (295)
7 PRK13055 putative lipid kinase 100.0 2.3E-42 5.1E-47 349.5 25.8 232 52-438 2-237 (334)
8 PRK13337 putative lipid kinase 100.0 4.4E-42 9.5E-47 343.1 25.6 230 52-437 1-232 (304)
9 PRK00861 putative lipid kinase 100.0 5.7E-42 1.2E-46 341.4 25.8 228 52-437 2-231 (300)
10 PRK13057 putative lipid kinase 100.0 5.9E-41 1.3E-45 332.2 24.1 221 56-437 1-223 (287)
11 TIGR03702 lip_kinase_YegS lipi 100.0 1.5E-40 3.3E-45 330.3 25.5 221 54-430 1-223 (293)
12 PRK13054 lipid kinase; Reviewe 100.0 2.9E-40 6.3E-45 329.4 25.9 224 51-430 2-227 (300)
13 COG1597 LCB5 Sphingosine kinas 100.0 2.1E-40 4.6E-45 330.6 23.2 231 51-437 1-234 (301)
14 TIGR00147 lipid kinase, YegS/R 100.0 6.4E-39 1.4E-43 318.0 26.6 230 52-437 1-233 (293)
15 PRK12361 hypothetical protein; 100.0 1.2E-35 2.6E-40 318.6 27.0 226 51-433 241-472 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 1.4E-26 3E-31 203.5 14.5 128 54-257 1-130 (130)
17 smart00046 DAGKc Diacylglycero 99.9 1.1E-21 2.4E-26 171.5 10.3 108 56-242 1-110 (124)
18 KOG4435 Predicted lipid kinase 99.8 2.3E-20 4.9E-25 186.3 13.2 185 50-319 58-256 (535)
19 KOG1169 Diacylglycerol kinase 99.6 3.3E-15 7.1E-20 158.7 17.2 182 51-307 270-478 (634)
20 KOG0782 Predicted diacylglycer 99.6 1.6E-15 3.5E-20 156.6 14.4 180 50-308 363-565 (1004)
21 smart00045 DAGKa Diacylglycero 98.9 8.5E-10 1.8E-14 100.6 4.4 101 272-437 2-126 (160)
22 PRK03708 ppnK inorganic polyph 98.8 1.1E-08 2.4E-13 101.5 9.5 111 54-247 2-115 (277)
23 PRK02645 ppnK inorganic polyph 98.8 3.3E-08 7.2E-13 99.4 9.9 78 51-133 2-79 (305)
24 COG3199 Predicted inorganic po 98.1 1.2E-05 2.7E-10 80.8 9.7 35 94-131 86-120 (355)
25 PRK03378 ppnK inorganic polyph 98.0 2.3E-05 5E-10 78.5 8.9 78 51-133 4-85 (292)
26 PRK01231 ppnK inorganic polyph 97.9 5E-05 1.1E-09 76.1 10.1 77 52-132 4-83 (295)
27 KOG1170 Diacylglycerol kinase 97.6 2.8E-05 6E-10 84.7 2.7 73 53-133 195-267 (1099)
28 PRK02155 ppnK NAD(+)/NADH kina 97.4 0.00062 1.3E-08 68.2 9.3 76 52-133 5-85 (291)
29 PRK03372 ppnK inorganic polyph 97.4 0.00058 1.3E-08 68.9 8.4 81 50-132 3-93 (306)
30 PF01513 NAD_kinase: ATP-NAD k 97.3 0.00014 2.9E-09 72.5 2.8 75 54-133 1-98 (285)
31 PF00609 DAGK_acc: Diacylglyce 97.1 0.0013 2.9E-08 60.0 7.2 38 272-309 2-49 (161)
32 PRK14076 pnk inorganic polypho 97.0 0.0051 1.1E-07 67.2 10.9 95 29-132 270-369 (569)
33 PRK04539 ppnK inorganic polyph 96.8 0.0077 1.7E-07 60.6 9.9 78 52-133 5-90 (296)
34 PRK02649 ppnK inorganic polyph 96.7 0.005 1.1E-07 62.1 8.2 75 52-132 1-89 (305)
35 PRK14077 pnk inorganic polypho 96.7 0.005 1.1E-07 61.6 7.7 74 51-132 9-85 (287)
36 PRK03501 ppnK inorganic polyph 96.4 0.011 2.4E-07 58.5 8.2 58 53-132 3-60 (264)
37 PRK01911 ppnK inorganic polyph 96.4 0.017 3.8E-07 57.9 9.4 73 54-132 2-85 (292)
38 PLN02935 Bifunctional NADH kin 96.2 0.015 3.3E-07 62.0 8.4 101 22-132 167-283 (508)
39 PRK04885 ppnK inorganic polyph 95.9 0.043 9.3E-07 54.3 9.1 56 54-133 2-57 (265)
40 PLN02727 NAD kinase 95.2 0.068 1.5E-06 60.6 8.8 78 49-132 675-764 (986)
41 PLN02929 NADH kinase 95.2 0.098 2.1E-06 52.7 9.0 53 68-131 32-84 (301)
42 PRK01185 ppnK inorganic polyph 94.9 0.055 1.2E-06 53.7 6.2 69 54-130 2-71 (271)
43 PF11711 Tim54: Inner membrane 94.7 0.13 2.8E-06 53.4 8.5 67 33-99 45-117 (382)
44 PRK14075 pnk inorganic polypho 94.3 0.12 2.7E-06 50.8 7.1 60 54-131 2-61 (256)
45 cd08194 Fe-ADH6 Iron-containin 93.7 0.75 1.6E-05 47.6 11.9 73 52-131 23-99 (375)
46 PRK00561 ppnK inorganic polyph 93.5 0.24 5.2E-06 48.9 7.4 53 54-132 2-54 (259)
47 PF13685 Fe-ADH_2: Iron-contai 93.0 0.28 6E-06 48.2 7.0 84 40-134 9-97 (250)
48 PRK04761 ppnK inorganic polyph 93.0 0.17 3.7E-06 49.6 5.5 26 108-133 22-47 (246)
49 cd08171 GlyDH-like2 Glycerol d 92.8 0.8 1.7E-05 46.8 10.4 76 53-133 23-99 (345)
50 cd08174 G1PDH-like Glycerol-1- 92.8 1 2.2E-05 45.7 11.0 70 53-133 26-96 (331)
51 cd08170 GlyDH Glycerol dehydro 92.5 0.99 2.1E-05 46.2 10.6 93 22-132 2-97 (351)
52 cd08197 DOIS 2-deoxy-scyllo-in 92.4 1.2 2.7E-05 45.9 11.2 75 53-132 24-104 (355)
53 PRK00002 aroB 3-dehydroquinate 92.4 1.4 3E-05 45.3 11.5 97 22-132 10-112 (358)
54 KOG2178 Predicted sugar kinase 92.2 0.18 3.9E-06 52.1 4.5 19 110-128 167-185 (409)
55 TIGR01357 aroB 3-dehydroquinat 92.0 1.5 3.2E-05 44.8 11.1 76 52-132 20-101 (344)
56 PRK09423 gldA glycerol dehydro 91.6 1.5 3.2E-05 45.2 10.7 94 22-133 9-105 (366)
57 COG0061 nadF NAD kinase [Coenz 91.4 1.2 2.5E-05 44.5 9.4 77 54-134 2-78 (281)
58 cd08549 G1PDH_related Glycerol 91.3 1.5 3.2E-05 44.7 10.1 94 22-132 2-100 (332)
59 cd08550 GlyDH-like Glycerol_de 91.1 1.4 3E-05 45.1 9.8 73 53-133 23-98 (349)
60 cd07766 DHQ_Fe-ADH Dehydroquin 90.5 2.8 6.1E-05 42.3 11.4 93 23-133 3-99 (332)
61 cd08172 GlyDH-like1 Glycerol d 89.8 1.9 4.1E-05 44.1 9.5 73 53-133 24-97 (347)
62 KOG4180 Predicted kinase [Gene 89.5 0.61 1.3E-05 47.1 5.3 50 73-133 78-127 (395)
63 PRK02231 ppnK inorganic polyph 89.5 0.77 1.7E-05 45.7 6.1 55 73-132 3-63 (272)
64 cd08175 G1PDH Glycerol-1-phosp 89.3 3.6 7.9E-05 42.0 11.1 72 53-133 24-101 (348)
65 cd08173 Gro1PDH Sn-glycerol-1- 88.8 2.5 5.5E-05 43.0 9.5 72 53-133 26-99 (339)
66 cd08169 DHQ-like Dehydroquinat 88.7 3 6.6E-05 42.7 10.1 76 52-132 23-103 (344)
67 cd08183 Fe-ADH2 Iron-containin 87.8 2.4 5.1E-05 43.9 8.7 69 53-131 23-94 (374)
68 PF10254 Pacs-1: PACS-1 cytoso 87.7 3.6 7.9E-05 43.2 9.8 87 39-134 3-98 (414)
69 cd08199 EEVS 2-epi-5-epi-valio 87.3 4.3 9.3E-05 41.9 10.1 77 51-132 25-108 (354)
70 cd08191 HHD 6-hydroxyhexanoate 87.2 3.4 7.3E-05 43.0 9.4 93 22-131 2-98 (386)
71 PRK00843 egsA NAD(P)-dependent 87.1 7.3 0.00016 39.9 11.7 94 22-132 12-107 (350)
72 PRK14021 bifunctional shikimat 86.4 5.5 0.00012 43.5 10.9 74 53-132 210-289 (542)
73 COG1454 EutG Alcohol dehydroge 86.0 5.1 0.00011 41.8 9.8 95 21-131 7-105 (377)
74 cd08181 PPD-like 1,3-propanedi 85.6 4.5 9.8E-05 41.5 9.3 94 21-130 4-101 (357)
75 PRK15454 ethanol dehydrogenase 85.4 3.5 7.5E-05 43.1 8.4 92 21-128 27-122 (395)
76 PLN02834 3-dehydroquinate synt 84.9 3.8 8.2E-05 43.5 8.5 75 52-131 100-182 (433)
77 PRK10586 putative oxidoreducta 84.5 8.1 0.00018 40.0 10.5 72 53-133 35-107 (362)
78 cd08177 MAR Maleylacetate redu 83.2 7.9 0.00017 39.4 9.8 92 23-133 3-98 (337)
79 cd08189 Fe-ADH5 Iron-containin 83.1 3.8 8.2E-05 42.4 7.4 95 20-130 3-101 (374)
80 PF00465 Fe-ADH: Iron-containi 83.0 2.4 5.2E-05 43.6 5.9 92 21-130 1-96 (366)
81 cd08185 Fe-ADH1 Iron-containin 83.0 7.8 0.00017 40.1 9.8 95 21-131 4-102 (380)
82 cd08195 DHQS Dehydroquinate sy 82.9 3.8 8.2E-05 41.9 7.3 77 51-132 23-105 (345)
83 cd08187 BDH Butanol dehydrogen 82.4 7 0.00015 40.5 9.1 95 21-131 7-105 (382)
84 cd08186 Fe-ADH8 Iron-containin 82.1 7.6 0.00017 40.3 9.3 74 52-131 26-103 (383)
85 cd08179 NADPH_BDH NADPH-depend 82.1 4.8 0.0001 41.6 7.8 91 21-130 5-99 (375)
86 PRK10624 L-1,2-propanediol oxi 82.0 5.8 0.00013 41.1 8.4 71 52-129 30-104 (382)
87 cd08192 Fe-ADH7 Iron-containin 82.0 7.7 0.00017 40.0 9.2 73 52-131 24-100 (370)
88 cd08551 Fe-ADH iron-containing 81.3 6.9 0.00015 40.2 8.6 73 52-131 23-99 (370)
89 TIGR02638 lactal_redase lactal 81.3 6.6 0.00014 40.7 8.5 94 21-130 7-104 (379)
90 cd08193 HVD 5-hydroxyvalerate 80.9 4.8 0.0001 41.6 7.3 95 21-131 4-102 (376)
91 cd08188 Fe-ADH4 Iron-containin 80.6 8.8 0.00019 39.7 9.1 96 18-129 3-102 (377)
92 cd08176 LPO Lactadehyde:propan 80.0 8 0.00017 40.0 8.6 95 21-131 6-104 (377)
93 cd08190 HOT Hydroxyacid-oxoaci 77.5 11 0.00023 39.7 8.7 90 23-128 3-96 (414)
94 PRK09860 putative alcohol dehy 77.1 10 0.00023 39.4 8.4 88 22-124 10-101 (383)
95 cd08182 HEPD Hydroxyethylphosp 75.7 12 0.00025 38.6 8.3 70 52-131 23-96 (367)
96 PRK06756 flavodoxin; Provision 75.6 12 0.00027 33.0 7.4 70 53-133 2-74 (148)
97 cd06268 PBP1_ABC_transporter_L 75.5 69 0.0015 30.1 13.1 98 26-134 114-213 (298)
98 cd08198 DHQS-like2 Dehydroquin 72.5 15 0.00032 38.3 8.0 80 51-132 29-119 (369)
99 cd07025 Peptidase_S66 LD-Carbo 71.9 12 0.00026 37.3 7.0 72 57-130 2-81 (282)
100 PRK06203 aroB 3-dehydroquinate 71.0 10 0.00022 39.7 6.5 78 52-131 42-130 (389)
101 cd08178 AAD_C C-terminal alcoh 70.5 10 0.00022 39.5 6.5 72 52-130 21-96 (398)
102 PF00169 PH: PH domain; Inter 70.0 6.3 0.00014 31.2 3.8 24 22-45 80-103 (104)
103 PF03575 Peptidase_S51: Peptid 70.0 5.4 0.00012 35.8 3.7 46 72-123 2-47 (154)
104 COG0371 GldA Glycerol dehydrog 69.5 41 0.00088 35.0 10.4 73 53-134 31-106 (360)
105 PLN02948 phosphoribosylaminoim 69.5 1.1E+02 0.0023 33.9 14.3 123 4-134 359-489 (577)
106 cd08184 Fe-ADH3 Iron-containin 68.8 21 0.00046 36.6 8.3 71 53-131 26-100 (347)
107 cd06167 LabA_like LabA_like pr 68.8 67 0.0014 28.0 10.5 76 52-135 39-123 (149)
108 PRK05568 flavodoxin; Provision 68.8 16 0.00035 31.7 6.5 55 53-119 2-56 (142)
109 smart00115 CASc Caspase, inter 68.3 23 0.00049 34.4 7.9 75 49-123 4-85 (241)
110 TIGR00288 conserved hypothetic 68.2 51 0.0011 30.3 9.6 58 74-134 70-128 (160)
111 PRK11780 isoprenoid biosynthes 67.9 13 0.00028 35.7 6.0 70 53-123 2-97 (217)
112 cd08180 PDD 1,3-propanediol de 67.5 19 0.00042 36.4 7.6 70 53-130 23-96 (332)
113 PF00731 AIRC: AIR carboxylase 67.0 32 0.00069 31.3 8.0 68 64-134 8-79 (150)
114 cd07062 Peptidase_S66_mccF_lik 65.7 24 0.00052 35.6 7.8 74 56-130 3-85 (308)
115 smart00233 PH Pleckstrin homol 65.6 12 0.00025 28.9 4.5 24 22-45 78-101 (102)
116 PRK05569 flavodoxin; Provision 65.2 19 0.00042 31.3 6.2 56 53-120 2-57 (141)
117 cd04509 PBP1_ABC_transporter_G 64.6 1.1E+02 0.0025 28.6 12.0 99 24-134 114-214 (299)
118 PRK06703 flavodoxin; Provision 64.3 26 0.00057 31.0 7.0 66 53-130 2-70 (151)
119 cd01536 PBP1_ABC_sugar_binding 64.1 32 0.0007 32.1 8.0 74 56-133 3-78 (267)
120 PRK09271 flavodoxin; Provision 64.0 19 0.00041 32.4 6.1 72 54-133 2-76 (160)
121 cd06333 PBP1_ABC-type_HAAT_lik 63.8 1.1E+02 0.0024 29.8 12.0 98 26-135 113-212 (312)
122 PRK11104 hemG protoporphyrinog 63.8 16 0.00034 33.7 5.6 68 54-134 2-71 (177)
123 PF00763 THF_DHG_CYH: Tetrahyd 63.4 80 0.0017 27.1 9.6 79 34-117 9-93 (117)
124 PF13458 Peripla_BP_6: Peripla 63.1 88 0.0019 30.7 11.3 100 24-134 112-213 (343)
125 cd00032 CASc Caspase, interleu 63.1 29 0.00063 33.6 7.6 74 50-123 6-86 (243)
126 cd03132 GATase1_catalase Type 61.2 12 0.00026 32.6 4.2 67 53-124 2-75 (142)
127 PRK04155 chaperone protein Hch 60.8 38 0.00081 34.0 8.0 42 51-92 48-99 (287)
128 TIGR02069 cyanophycinase cyano 60.6 50 0.0011 32.4 8.7 51 67-122 40-93 (250)
129 PRK11253 ldcA L,D-carboxypepti 60.1 33 0.00072 34.6 7.6 74 55-130 3-85 (305)
130 cd01251 PH_centaurin_alpha Cen 60.1 11 0.00024 31.6 3.6 25 22-46 77-101 (103)
131 COG1433 Uncharacterized conser 60.1 46 0.001 29.1 7.5 73 51-134 35-107 (121)
132 cd01219 PH_FGD FGD (faciogenit 59.3 17 0.00037 30.3 4.6 31 16-46 66-100 (101)
133 cd01220 PH_CDEP Chondrocyte-de 58.6 13 0.00029 31.1 3.8 25 22-46 74-98 (99)
134 cd06295 PBP1_CelR Ligand bindi 58.4 58 0.0013 30.9 8.7 76 51-132 2-84 (275)
135 cd06310 PBP1_ABC_sugar_binding 58.0 49 0.0011 31.3 8.2 75 55-133 2-80 (273)
136 cd01540 PBP1_arabinose_binding 58.0 1.4E+02 0.003 28.5 11.4 107 28-135 105-217 (289)
137 cd06341 PBP1_ABC_ligand_bindin 57.4 87 0.0019 31.0 10.1 97 26-134 112-211 (341)
138 cd00764 Eukaryotic_PFK Phospho 56.2 25 0.00054 40.1 6.4 71 52-128 419-495 (762)
139 cd03129 GAT1_Peptidase_E_like 55.9 81 0.0017 29.6 9.1 63 52-123 29-92 (210)
140 cd06366 PBP1_GABAb_receptor Li 55.8 1.9E+02 0.004 28.8 12.3 78 51-134 134-215 (350)
141 PRK13805 bifunctional acetalde 55.1 56 0.0012 37.8 9.3 93 21-131 460-558 (862)
142 PRK05282 (alpha)-aspartyl dipe 54.9 74 0.0016 31.0 8.7 74 34-123 17-91 (233)
143 cd06325 PBP1_ABC_uncharacteriz 54.1 1.3E+02 0.0028 28.5 10.4 77 51-134 130-206 (281)
144 PRK15138 aldehyde reductase; P 54.1 38 0.00082 35.3 7.1 89 22-129 10-102 (387)
145 PRK06490 glutamine amidotransf 53.9 24 0.00052 34.3 5.2 63 50-126 5-67 (239)
146 PF04392 ABC_sub_bind: ABC tra 53.8 86 0.0019 30.9 9.3 93 30-133 113-205 (294)
147 cd01222 PH_clg Clg (common-sit 53.6 27 0.00059 29.3 4.8 24 22-45 72-95 (97)
148 cd00537 MTHFR Methylenetetrahy 53.6 1.1E+02 0.0024 30.0 10.0 71 51-123 28-98 (274)
149 PF03358 FMN_red: NADPH-depend 53.5 49 0.0011 28.9 6.8 76 54-134 2-95 (152)
150 cd01235 PH_SETbf Set binding f 53.3 14 0.00031 30.0 3.1 24 22-45 78-101 (101)
151 PRK13869 plasmid-partitioning 52.7 55 0.0012 34.4 8.0 70 30-100 88-167 (405)
152 PF01936 NYN: NYN domain; Int 52.5 83 0.0018 27.0 8.1 62 73-134 50-118 (146)
153 KOG3857 Alcohol dehydrogenase, 52.0 28 0.00061 36.0 5.4 70 51-130 69-145 (465)
154 smart00852 MoCF_biosynth Proba 51.9 35 0.00076 29.7 5.5 59 73-133 21-84 (135)
155 cd06305 PBP1_methylthioribose_ 51.7 76 0.0016 29.9 8.3 62 70-134 16-79 (273)
156 cd06278 PBP1_LacI_like_2 Ligan 50.8 70 0.0015 29.9 7.9 70 57-131 4-73 (266)
157 PRK06718 precorrin-2 dehydroge 50.7 62 0.0013 30.5 7.4 73 53-133 11-92 (202)
158 cd06342 PBP1_ABC_LIVBP_like Ty 50.6 2.1E+02 0.0045 28.0 11.5 98 26-134 114-213 (334)
159 TIGR00677 fadh2_euk methylenet 50.3 1.9E+02 0.0041 28.8 11.1 91 28-123 9-99 (281)
160 PRK07308 flavodoxin; Validated 50.3 67 0.0014 28.2 7.1 62 53-126 2-66 (146)
161 cd06300 PBP1_ABC_sugar_binding 49.8 94 0.002 29.4 8.7 61 70-133 16-83 (272)
162 PF13377 Peripla_BP_3: Peripla 49.7 1.2E+02 0.0025 26.2 8.6 84 51-136 8-92 (160)
163 PRK05395 3-dehydroquinate dehy 49.5 91 0.002 28.3 7.7 43 74-120 34-76 (146)
164 COG0205 PfkA 6-phosphofructoki 49.5 38 0.00083 35.0 6.0 70 52-127 32-110 (347)
165 cd03133 GATase1_ES1 Type 1 glu 49.5 22 0.00047 34.1 4.0 60 64-123 9-94 (213)
166 cd03146 GAT1_Peptidase_E Type 49.2 64 0.0014 30.5 7.2 70 51-133 30-100 (212)
167 TIGR00676 fadh2 5,10-methylene 48.9 1.5E+02 0.0032 29.2 10.1 89 30-123 10-98 (272)
168 cd03147 GATase1_Ydr533c_like T 48.8 27 0.00058 33.8 4.6 16 108-123 91-106 (231)
169 KOG1115 Ceramide kinase [Lipid 48.6 7.6 0.00017 40.7 0.8 88 348-438 393-480 (516)
170 PLN02564 6-phosphofructokinase 48.4 25 0.00054 37.9 4.7 69 53-127 120-192 (484)
171 TIGR01754 flav_RNR ribonucleot 48.3 39 0.00083 29.6 5.2 72 54-134 2-76 (140)
172 PF06506 PrpR_N: Propionate ca 48.3 1.5E+02 0.0032 27.1 9.3 67 50-130 75-141 (176)
173 cd03169 GATase1_PfpI_1 Type 1 48.2 19 0.00041 32.9 3.3 15 110-124 75-89 (180)
174 PHA02519 plasmid partition pro 47.8 51 0.0011 34.4 6.8 69 30-99 83-152 (387)
175 cd06282 PBP1_GntR_like_2 Ligan 46.8 1.1E+02 0.0025 28.5 8.6 74 56-133 3-77 (266)
176 cd00763 Bacterial_PFK Phosphof 46.7 50 0.0011 33.6 6.4 71 52-128 30-109 (317)
177 cd00821 PH Pleckstrin homology 46.6 25 0.00054 26.7 3.4 22 22-43 74-95 (96)
178 cd06349 PBP1_ABC_ligand_bindin 46.6 3E+02 0.0065 27.1 12.6 77 52-134 135-213 (340)
179 PRK09432 metF 5,10-methylenete 46.0 2.2E+02 0.0048 28.6 10.9 67 56-122 55-121 (296)
180 cd01538 PBP1_ABC_xylose_bindin 46.0 78 0.0017 30.6 7.5 61 70-133 16-78 (288)
181 cd06386 PBP1_NPR_C_like Ligand 45.7 2.9E+02 0.0062 28.3 12.0 96 26-132 117-215 (387)
182 PLN02285 methionyl-tRNA formyl 45.7 61 0.0013 33.2 6.9 83 33-119 17-101 (334)
183 cd00764 Eukaryotic_PFK Phospho 45.5 43 0.00094 38.2 6.2 69 53-127 34-113 (762)
184 TIGR02478 6PF1K_euk 6-phosphof 45.4 43 0.00093 38.2 6.2 69 53-127 31-110 (745)
185 TIGR00322 diphth2_R diphthamid 45.1 1.2E+02 0.0026 31.1 8.9 63 50-120 230-292 (332)
186 PRK14071 6-phosphofructokinase 45.1 35 0.00076 35.4 5.0 72 54-132 37-127 (360)
187 PRK06895 putative anthranilate 45.1 67 0.0015 29.7 6.6 54 53-123 2-55 (190)
188 PRK03202 6-phosphofructokinase 44.9 32 0.00069 35.1 4.7 73 53-132 32-113 (320)
189 PF09419 PGP_phosphatase: Mito 44.7 2E+02 0.0044 26.6 9.5 91 32-130 62-153 (168)
190 cd06334 PBP1_ABC_ligand_bindin 44.6 3E+02 0.0066 27.7 11.9 78 51-134 139-218 (351)
191 PRK11303 DNA-binding transcrip 44.3 2.9E+02 0.0062 27.0 11.4 78 51-132 60-138 (328)
192 TIGR03405 Phn_Fe-ADH phosphona 44.1 57 0.0012 33.4 6.5 91 22-131 5-99 (355)
193 PRK06555 pyrophosphate--fructo 43.8 22 0.00048 37.4 3.4 27 98-127 102-128 (403)
194 PRK05637 anthranilate synthase 43.2 1.2E+02 0.0027 28.7 8.2 58 53-127 2-60 (208)
195 COG3340 PepE Peptidase E [Amin 43.2 1.3E+02 0.0028 29.1 8.1 66 53-127 33-99 (224)
196 cd06343 PBP1_ABC_ligand_bindin 43.2 2.3E+02 0.0051 28.2 10.7 96 28-134 125-222 (362)
197 PRK06830 diphosphate--fructose 43.2 23 0.00051 37.7 3.5 69 53-127 113-188 (443)
198 PRK07053 glutamine amidotransf 43.1 33 0.00071 33.2 4.3 58 52-124 2-60 (234)
199 PRK10014 DNA-binding transcrip 43.0 1.6E+02 0.0035 29.0 9.5 79 51-133 63-142 (342)
200 PRK10423 transcriptional repre 42.9 2.7E+02 0.0059 27.1 11.0 69 51-123 55-124 (327)
201 PRK03743 pdxA 4-hydroxythreoni 42.9 92 0.002 32.0 7.6 80 31-118 181-266 (332)
202 PF02219 MTHFR: Methylenetetra 42.6 1.7E+02 0.0038 28.9 9.5 69 52-122 41-109 (287)
203 PRK05948 precorrin-2 methyltra 42.5 2.2E+02 0.0047 27.7 9.9 24 110-133 91-114 (238)
204 TIGR01162 purE phosphoribosyla 42.3 81 0.0018 28.9 6.4 66 64-132 6-75 (156)
205 PRK11574 oxidative-stress-resi 42.0 38 0.00083 31.2 4.4 68 52-123 2-78 (196)
206 cd06360 PBP1_alkylbenzenes_lik 41.9 2.3E+02 0.0049 27.7 10.3 77 52-134 134-212 (336)
207 cd01743 GATase1_Anthranilate_S 41.8 40 0.00086 30.9 4.5 46 73-126 12-57 (184)
208 cd06326 PBP1_STKc_like Type I 41.7 3.4E+02 0.0074 26.4 12.6 97 26-134 116-214 (336)
209 cd06353 PBP1_BmpA_Med_like Per 41.7 1.1E+02 0.0023 29.8 7.7 57 72-133 20-77 (258)
210 cd06289 PBP1_MalI_like Ligand- 41.7 1.3E+02 0.0029 28.0 8.2 73 58-133 4-77 (268)
211 cd01265 PH_PARIS-1 PARIS-1 ple 41.6 30 0.00064 28.5 3.2 23 22-44 71-93 (95)
212 PLN02884 6-phosphofructokinase 41.6 25 0.00054 37.2 3.3 70 52-127 84-159 (411)
213 cd01233 Unc104 Unc-104 pleckst 41.5 28 0.0006 28.9 3.1 24 22-45 75-98 (100)
214 cd00861 ProRS_anticodon_short 41.5 41 0.00088 26.8 4.0 43 73-121 21-64 (94)
215 cd06271 PBP1_AglR_RafR_like Li 41.4 1.3E+02 0.0028 28.1 8.1 53 69-123 19-71 (268)
216 COG4635 HemG Flavodoxin [Energ 41.3 79 0.0017 29.3 6.1 69 54-134 2-72 (175)
217 COG1979 Uncharacterized oxidor 41.2 1.1E+02 0.0023 31.7 7.5 82 24-120 12-94 (384)
218 TIGR03590 PseG pseudaminic aci 41.1 1.4E+02 0.003 29.5 8.4 18 110-128 240-257 (279)
219 PRK10653 D-ribose transporter 41.1 1.2E+02 0.0025 29.4 8.0 77 52-132 26-104 (295)
220 PF13407 Peripla_BP_4: Peripla 40.9 1.2E+02 0.0025 28.5 7.7 77 57-134 2-79 (257)
221 TIGR02482 PFKA_ATP 6-phosphofr 40.8 46 0.00099 33.7 5.0 69 53-127 30-107 (301)
222 cd01230 PH_EFA6 EFA6 Pleckstri 40.5 37 0.00079 29.5 3.7 26 22-47 88-113 (117)
223 cd01218 PH_phafin2 Phafin2 Pl 40.3 40 0.00088 28.6 3.9 26 22-47 75-100 (104)
224 cd00466 DHQase_II Dehydroquina 40.1 84 0.0018 28.3 6.0 43 74-120 32-74 (140)
225 cd06363 PBP1_Taste_receptor Li 40.1 4.3E+02 0.0093 27.2 12.3 95 27-133 157-256 (410)
226 cd06320 PBP1_allose_binding Pe 40.1 1.1E+02 0.0024 28.9 7.5 75 55-133 2-80 (275)
227 PRK06774 para-aminobenzoate sy 40.0 62 0.0013 29.9 5.5 46 74-127 14-59 (191)
228 PRK14072 6-phosphofructokinase 40.0 25 0.00054 37.2 3.1 27 98-127 93-119 (416)
229 cd06312 PBP1_ABC_sugar_binding 39.9 1.7E+02 0.0037 27.6 8.8 71 60-133 6-80 (271)
230 PF04577 DUF563: Protein of un 39.8 2E+02 0.0044 26.1 9.0 81 36-126 86-167 (206)
231 cd01260 PH_CNK Connector enhan 39.8 28 0.0006 28.3 2.8 23 22-44 74-96 (96)
232 cd06296 PBP1_CatR_like Ligand- 39.8 1.4E+02 0.003 28.0 8.1 70 57-131 4-74 (270)
233 cd00886 MogA_MoaB MogA_MoaB fa 39.8 1.3E+02 0.0029 26.8 7.4 57 74-132 24-87 (152)
234 PF07015 VirC1: VirC1 protein; 39.7 91 0.002 30.4 6.7 50 54-104 2-51 (231)
235 cd06304 PBP1_BmpA_like Peripla 39.5 95 0.0021 29.5 6.9 49 70-121 18-66 (260)
236 PF12138 Spherulin4: Spherulat 39.1 1.1E+02 0.0023 30.2 7.2 45 51-95 29-80 (253)
237 cd06318 PBP1_ABC_sugar_binding 39.1 1.3E+02 0.0029 28.4 7.9 62 69-133 15-78 (282)
238 TIGR02667 moaB_proteo molybden 38.8 1.9E+02 0.004 26.3 8.3 60 74-134 26-91 (163)
239 cd06336 PBP1_ABC_ligand_bindin 38.5 3E+02 0.0065 27.4 10.7 97 26-134 118-217 (347)
240 cd06352 PBP1_NPR_GC_like Ligan 38.4 3.7E+02 0.0081 27.0 11.5 77 52-134 137-217 (389)
241 cd06311 PBP1_ABC_sugar_binding 38.3 3.5E+02 0.0075 25.5 10.7 100 27-134 106-207 (274)
242 COG0655 WrbA Multimeric flavod 37.9 1.6E+02 0.0034 27.6 8.0 81 53-134 2-100 (207)
243 PRK05562 precorrin-2 dehydroge 37.7 2.3E+02 0.0049 27.4 9.1 62 72-134 38-108 (223)
244 PRK01175 phosphoribosylformylg 37.5 57 0.0012 32.3 5.0 54 53-120 4-57 (261)
245 cd06335 PBP1_ABC_ligand_bindin 37.4 4.2E+02 0.0092 26.3 11.6 77 52-134 138-216 (347)
246 cd01252 PH_cytohesin Cytohesin 37.2 42 0.00091 28.9 3.6 26 22-47 90-115 (125)
247 PRK13705 plasmid-partitioning 37.2 94 0.002 32.4 6.8 68 30-98 83-151 (388)
248 cd01537 PBP1_Repressors_Sugar_ 37.0 1.8E+02 0.004 26.6 8.3 68 61-131 7-75 (264)
249 TIGR02483 PFK_mixed phosphofru 37.0 35 0.00076 34.9 3.5 72 54-132 32-114 (324)
250 cd01539 PBP1_GGBP Periplasmic 37.0 1.9E+02 0.004 28.3 8.7 58 72-133 18-80 (303)
251 TIGR02478 6PF1K_euk 6-phosphof 36.7 75 0.0016 36.3 6.4 71 52-128 419-495 (745)
252 cd02042 ParA ParA and ParB of 36.5 93 0.002 25.2 5.5 37 56-93 2-38 (104)
253 cd06321 PBP1_ABC_sugar_binding 36.5 1.6E+02 0.0035 27.7 8.0 62 69-133 15-80 (271)
254 PRK13015 3-dehydroquinate dehy 36.3 1E+02 0.0023 27.9 6.0 43 74-120 34-76 (146)
255 cd06345 PBP1_ABC_ligand_bindin 36.1 4.4E+02 0.0095 26.0 11.9 78 51-134 143-222 (344)
256 cd06270 PBP1_GalS_like Ligand 35.8 1.9E+02 0.0041 27.2 8.3 64 56-123 3-67 (268)
257 PRK10936 TMAO reductase system 35.8 1.5E+02 0.0032 29.8 7.9 73 50-123 44-116 (343)
258 cd06315 PBP1_ABC_sugar_binding 35.7 1.2E+02 0.0027 29.0 7.1 75 53-131 1-77 (280)
259 cd05805 MPG1_transferase GTP-m 35.7 1.6E+02 0.0035 31.0 8.4 55 33-92 147-201 (441)
260 PLN02335 anthranilate synthase 35.5 1.6E+02 0.0034 28.2 7.6 63 49-127 15-78 (222)
261 TIGR02417 fruct_sucro_rep D-fr 35.5 4.3E+02 0.0093 25.8 12.0 78 51-132 59-137 (327)
262 PRK05670 anthranilate synthase 35.3 81 0.0018 29.1 5.5 46 73-126 13-58 (189)
263 PRK14179 bifunctional 5,10-met 35.3 3.9E+02 0.0085 26.8 10.6 80 33-117 10-96 (284)
264 PRK13146 hisH imidazole glycer 35.3 1.4E+02 0.0031 28.1 7.2 56 53-128 2-57 (209)
265 cd01391 Periplasmic_Binding_Pr 35.3 1.7E+02 0.0037 26.4 7.7 69 61-132 7-79 (269)
266 cd00363 PFK Phosphofructokinas 35.2 35 0.00077 35.0 3.3 69 53-127 31-108 (338)
267 cd06306 PBP1_TorT-like TorT-li 35.2 1.8E+02 0.004 27.6 8.2 56 73-131 19-77 (268)
268 PRK03371 pdxA 4-hydroxythreoni 35.1 1.3E+02 0.0028 30.9 7.3 80 31-118 180-265 (326)
269 cd01232 PH_TRIO Trio pleckstri 35.0 70 0.0015 27.6 4.6 25 22-46 89-113 (114)
270 COG1049 AcnB Aconitase B [Ener 35.0 13 0.00028 40.9 -0.0 22 113-134 459-480 (852)
271 cd03145 GAT1_cyanophycinase Ty 34.9 1.6E+02 0.0035 27.9 7.6 64 51-122 28-94 (217)
272 cd06273 PBP1_GntR_like_1 This 34.8 2.3E+02 0.005 26.5 8.7 72 55-131 2-74 (268)
273 cd01246 PH_oxysterol_bp Oxyste 34.7 39 0.00084 26.5 2.8 23 22-44 69-91 (91)
274 PF00365 PFK: Phosphofructokin 34.6 32 0.00069 34.4 2.8 30 99-132 83-112 (282)
275 PRK14189 bifunctional 5,10-met 34.6 4.2E+02 0.009 26.7 10.7 80 32-117 10-96 (285)
276 PF01220 DHquinase_II: Dehydro 34.6 1E+02 0.0022 27.7 5.7 41 74-118 33-73 (140)
277 TIGR01088 aroQ 3-dehydroquinat 34.6 1.1E+02 0.0024 27.6 5.8 43 74-120 32-74 (141)
278 cd00758 MoCF_BD MoCF_BD: molyb 34.3 93 0.002 27.0 5.4 59 73-133 22-85 (133)
279 TIGR00272 DPH2 diphthamide bio 34.3 1.9E+02 0.0041 31.5 8.7 63 49-119 278-340 (496)
280 cd06298 PBP1_CcpA_like Ligand- 34.3 3.9E+02 0.0084 24.9 11.1 98 29-135 99-200 (268)
281 PRK14174 bifunctional 5,10-met 34.2 3.9E+02 0.0085 27.0 10.4 79 33-117 9-95 (295)
282 PF08458 PH_2: Plant pleckstri 34.2 40 0.00088 29.1 2.9 28 22-49 80-107 (110)
283 cd01574 PBP1_LacI Ligand-bindi 34.0 1.8E+02 0.0039 27.1 7.8 63 59-124 5-69 (264)
284 cd01250 PH_centaurin Centaurin 33.9 38 0.00083 26.7 2.7 22 22-43 72-93 (94)
285 PF15410 PH_9: Pleckstrin homo 33.4 42 0.0009 28.9 3.0 29 16-44 84-117 (119)
286 cd01653 GATase1 Type 1 glutami 33.1 1E+02 0.0022 23.6 5.1 49 72-127 14-62 (115)
287 PTZ00286 6-phospho-1-fructokin 32.9 1.2E+02 0.0027 32.5 7.0 69 53-127 120-192 (459)
288 cd06267 PBP1_LacI_sugar_bindin 32.8 2.4E+02 0.0053 25.8 8.4 71 57-131 3-74 (264)
289 PRK14193 bifunctional 5,10-met 32.8 4.8E+02 0.01 26.2 10.8 80 33-117 11-96 (284)
290 PRK11303 DNA-binding transcrip 32.8 4.7E+02 0.01 25.4 12.3 98 29-135 162-261 (328)
291 cd06338 PBP1_ABC_ligand_bindin 32.8 4.7E+02 0.01 25.6 11.0 77 52-134 141-219 (345)
292 cd06293 PBP1_LacI_like_11 Liga 32.7 2.3E+02 0.005 26.6 8.4 58 61-121 7-65 (269)
293 PRK14192 bifunctional 5,10-met 32.7 4.3E+02 0.0094 26.3 10.5 81 32-117 10-97 (283)
294 CHL00101 trpG anthranilate syn 32.3 92 0.002 28.8 5.3 45 74-126 14-58 (190)
295 PRK14169 bifunctional 5,10-met 32.1 4.7E+02 0.01 26.3 10.5 79 34-117 10-94 (282)
296 COG1609 PurR Transcriptional r 32.1 3.8E+02 0.0083 27.0 10.2 66 50-119 56-122 (333)
297 cd06290 PBP1_LacI_like_9 Ligan 32.0 2.4E+02 0.0051 26.4 8.3 62 56-121 3-65 (265)
298 TIGR02955 TMAO_TorT TMAO reduc 32.0 1.5E+02 0.0033 28.8 7.1 55 73-130 19-77 (295)
299 cd06354 PBP1_BmpA_PnrA_like Pe 31.9 1.5E+02 0.0032 28.4 6.9 48 70-120 19-66 (265)
300 KOG0333 U5 snRNP-like RNA heli 31.8 5.1E+02 0.011 28.7 11.1 69 38-117 505-573 (673)
301 PRK09701 D-allose transporter 31.8 3.2E+02 0.0069 26.8 9.5 76 53-132 25-104 (311)
302 cd06307 PBP1_uncharacterized_s 31.7 4.4E+02 0.0096 24.8 10.8 80 51-134 124-207 (275)
303 COG0859 RfaF ADP-heptose:LPS h 31.7 1.3E+02 0.0028 30.5 6.7 71 54-131 175-249 (334)
304 cd06299 PBP1_LacI_like_13 Liga 31.6 3E+02 0.0066 25.6 8.9 69 61-133 7-76 (265)
305 cd06282 PBP1_GntR_like_2 Ligan 31.6 4.2E+02 0.0092 24.5 10.1 99 29-135 99-199 (266)
306 PF03129 HGTP_anticodon: Antic 31.5 77 0.0017 25.3 4.1 47 70-121 16-62 (94)
307 PF02608 Bmp: Basic membrane p 31.4 1.2E+02 0.0026 30.3 6.3 69 61-134 11-82 (306)
308 PRK14188 bifunctional 5,10-met 31.4 3E+02 0.0065 27.8 9.1 79 33-117 10-96 (296)
309 PF00994 MoCF_biosynth: Probab 31.4 1.1E+02 0.0024 26.8 5.5 59 73-133 20-83 (144)
310 PF02288 Dehydratase_MU: Dehyd 31.2 1.7E+02 0.0037 25.3 6.3 54 69-124 16-69 (112)
311 cd06280 PBP1_LacI_like_4 Ligan 31.1 4.4E+02 0.0096 24.6 10.3 97 29-135 98-195 (263)
312 PRK10401 DNA-binding transcrip 31.0 5E+02 0.011 25.6 10.9 88 30-121 29-125 (346)
313 cd02037 MRP-like MRP (Multiple 30.8 1.8E+02 0.004 25.9 6.9 39 56-95 2-40 (169)
314 cd06272 PBP1_hexuronate_repres 30.7 2.3E+02 0.005 26.5 7.9 56 61-122 7-62 (261)
315 cd01253 PH_beta_spectrin Beta- 30.7 45 0.00098 27.4 2.7 22 22-43 82-103 (104)
316 cd06324 PBP1_ABC_sugar_binding 30.5 2.5E+02 0.0054 27.3 8.4 70 61-133 7-80 (305)
317 PF05893 LuxC: Acyl-CoA reduct 30.4 52 0.0011 34.5 3.6 20 110-129 167-186 (399)
318 cd06284 PBP1_LacI_like_6 Ligan 30.4 2.2E+02 0.0047 26.5 7.7 64 56-123 3-67 (267)
319 cd01391 Periplasmic_Binding_Pr 30.4 4E+02 0.0087 23.9 11.6 100 24-134 102-204 (269)
320 TIGR02417 fruct_sucro_rep D-fr 30.3 5.2E+02 0.011 25.2 10.9 83 51-135 177-261 (327)
321 PRK07765 para-aminobenzoate sy 30.3 2E+02 0.0044 27.3 7.4 47 74-126 15-61 (214)
322 PRK09739 hypothetical protein; 30.2 2.2E+02 0.0047 26.4 7.5 37 52-89 3-40 (199)
323 cd05802 GlmM GlmM is a bacteri 30.1 2.2E+02 0.0049 29.8 8.4 52 33-91 150-201 (434)
324 cd01542 PBP1_TreR_like Ligand- 30.0 4.5E+02 0.0097 24.3 9.9 97 30-135 98-196 (259)
325 PRK11041 DNA-binding transcrip 30.0 3.5E+02 0.0076 26.0 9.3 67 51-121 34-101 (309)
326 cd06281 PBP1_LacI_like_5 Ligan 29.9 3E+02 0.0065 25.9 8.6 69 61-132 7-76 (269)
327 PRK10703 DNA-binding transcrip 29.8 2.5E+02 0.0054 27.7 8.4 74 55-132 61-135 (341)
328 cd06319 PBP1_ABC_sugar_binding 29.8 2.6E+02 0.0056 26.3 8.2 60 70-132 16-77 (277)
329 COG4242 CphB Cyanophycinase an 29.7 1.6E+02 0.0034 29.3 6.5 65 51-122 50-117 (293)
330 PF00885 DMRL_synthase: 6,7-di 29.7 1.7E+02 0.0038 26.2 6.4 79 53-134 4-94 (144)
331 cd06358 PBP1_NHase Type I peri 29.4 5.5E+02 0.012 25.2 12.3 78 51-134 131-210 (333)
332 PLN02540 methylenetetrahydrofo 29.1 4.7E+02 0.01 29.0 10.7 91 28-123 8-98 (565)
333 cd06340 PBP1_ABC_ligand_bindin 29.0 5.8E+02 0.013 25.3 11.4 76 51-132 143-220 (347)
334 cd00860 ThrRS_anticodon ThrRS 28.9 2.4E+02 0.0052 21.8 6.6 46 72-122 17-62 (91)
335 cd00900 PH-like Pleckstrin hom 28.7 59 0.0013 24.7 2.9 23 21-43 76-98 (99)
336 cd06327 PBP1_SBP_like_1 Peripl 28.6 4.7E+02 0.01 25.7 10.1 97 24-132 113-211 (334)
337 cd01542 PBP1_TreR_like Ligand- 28.5 2.5E+02 0.0054 26.1 7.7 59 70-132 16-75 (259)
338 cd06301 PBP1_rhizopine_binding 28.5 2.4E+02 0.0053 26.4 7.7 62 70-134 16-80 (272)
339 cd06347 PBP1_ABC_ligand_bindin 28.5 5.5E+02 0.012 24.8 12.2 95 28-132 116-212 (334)
340 PRK14190 bifunctional 5,10-met 28.5 5.6E+02 0.012 25.7 10.4 79 34-117 12-96 (284)
341 PRK07564 phosphoglucomutase; V 28.5 2.3E+02 0.005 30.9 8.3 52 34-90 206-257 (543)
342 TIGR02405 trehalos_R_Ecol treh 28.4 5.6E+02 0.012 24.9 10.6 68 51-122 58-126 (311)
343 TIGR00177 molyb_syn molybdenum 28.4 1.4E+02 0.0031 26.3 5.6 57 74-132 31-92 (144)
344 PRK14176 bifunctional 5,10-met 28.3 6.2E+02 0.013 25.5 10.7 79 33-117 16-102 (287)
345 cd00885 cinA Competence-damage 28.3 1.4E+02 0.003 27.5 5.6 60 73-134 22-86 (170)
346 PRK09492 treR trehalose repres 28.3 5.5E+02 0.012 24.8 10.5 80 51-134 174-254 (315)
347 PRK08250 glutamine amidotransf 28.1 91 0.002 30.1 4.7 57 54-125 2-59 (235)
348 cd01227 PH_Dbs Dbs (DBL's big 28.0 93 0.002 27.7 4.3 37 3-48 82-118 (133)
349 PF04166 PdxA: Pyridoxal phosp 28.0 1E+02 0.0022 31.3 5.0 80 31-118 154-240 (298)
350 PRK15424 propionate catabolism 27.9 2.4E+02 0.0051 31.0 8.2 52 72-132 122-173 (538)
351 PRK00170 azoreductase; Reviewe 27.9 2.5E+02 0.0054 25.7 7.5 38 53-90 2-42 (201)
352 cd00738 HGTP_anticodon HGTP an 27.8 1.6E+02 0.0035 23.0 5.5 43 73-120 21-63 (94)
353 cd01742 GATase1_GMP_Synthase T 27.8 66 0.0014 29.1 3.5 44 74-126 13-56 (181)
354 PRK14173 bifunctional 5,10-met 27.5 6.5E+02 0.014 25.3 10.8 80 32-117 10-93 (287)
355 PRK14191 bifunctional 5,10-met 27.4 6.3E+02 0.014 25.4 10.5 79 34-117 10-95 (285)
356 PRK08284 precorrin 6A synthase 27.4 4.4E+02 0.0096 25.8 9.4 24 110-133 102-125 (253)
357 PLN02837 threonine-tRNA ligase 27.4 3.3E+02 0.0071 30.3 9.4 46 70-121 530-575 (614)
358 PRK09273 hypothetical protein; 27.3 1.3E+02 0.0028 29.0 5.3 63 57-122 4-74 (211)
359 PRK14175 bifunctional 5,10-met 27.2 6.1E+02 0.013 25.5 10.4 80 33-117 11-96 (286)
360 cd06316 PBP1_ABC_sugar_binding 27.1 3E+02 0.0064 26.5 8.2 59 72-134 18-80 (294)
361 COG0337 AroB 3-dehydroquinate 27.1 2.3E+02 0.005 29.5 7.5 73 51-128 32-110 (360)
362 COG0124 HisS Histidyl-tRNA syn 27.0 2.3E+02 0.0049 30.2 7.7 87 37-134 315-404 (429)
363 TIGR01481 ccpA catabolite cont 27.0 5.9E+02 0.013 24.7 10.7 67 51-121 58-125 (329)
364 cd06280 PBP1_LacI_like_4 Ligan 27.0 2.9E+02 0.0063 25.8 8.0 62 56-122 3-66 (263)
365 PF02233 PNTB: NAD(P) transhyd 27.0 1.7E+02 0.0036 31.6 6.6 77 36-134 325-401 (463)
366 TIGR01884 cas_HTH CRISPR locus 26.9 3.8E+02 0.0081 25.0 8.5 67 54-122 27-99 (203)
367 cd06283 PBP1_RegR_EndR_KdgR_li 26.9 5.1E+02 0.011 23.9 10.2 83 51-135 115-201 (267)
368 cd06330 PBP1_Arsenic_SBP_like 26.8 3E+02 0.0066 27.1 8.4 99 26-134 116-218 (346)
369 TIGR01132 pgm phosphoglucomuta 26.6 2E+02 0.0044 31.3 7.5 52 33-89 206-257 (543)
370 TIGR01118 lacA galactose-6-pho 26.5 1.3E+02 0.0027 27.2 4.8 50 69-122 12-66 (141)
371 PRK06719 precorrin-2 dehydroge 26.4 3.2E+02 0.007 24.6 7.7 60 74-134 28-93 (157)
372 cd01545 PBP1_SalR Ligand-bindi 26.4 3.9E+02 0.0084 24.9 8.7 73 57-133 4-78 (270)
373 cd06323 PBP1_ribose_binding Pe 26.2 2.3E+02 0.0051 26.3 7.1 62 69-133 15-78 (268)
374 cd05801 PGM_like3 This bacteri 26.1 2.3E+02 0.005 30.7 7.8 52 33-89 189-240 (522)
375 cd06283 PBP1_RegR_EndR_KdgR_li 26.0 2.4E+02 0.0051 26.2 7.1 60 61-123 7-67 (267)
376 TIGR01470 cysG_Nterm siroheme 25.9 1.8E+02 0.0039 27.5 6.1 74 53-134 10-92 (205)
377 TIGR01753 flav_short flavodoxi 25.9 1.8E+02 0.0039 24.6 5.8 52 56-119 2-53 (140)
378 PHA02518 ParA-like protein; Pr 25.8 1.6E+02 0.0036 26.8 5.8 48 54-102 1-48 (211)
379 COG0521 MoaB Molybdopterin bio 25.8 1.3E+02 0.0028 28.0 4.9 62 73-135 30-96 (169)
380 cd03141 GATase1_Hsp31_like Typ 25.7 83 0.0018 29.9 3.9 15 109-123 88-102 (221)
381 PRK14194 bifunctional 5,10-met 25.6 6.9E+02 0.015 25.3 10.5 81 32-118 11-98 (301)
382 cd06298 PBP1_CcpA_like Ligand- 25.6 2.3E+02 0.005 26.4 7.0 60 68-131 14-74 (268)
383 TIGR02329 propionate_PrpR prop 25.5 2.9E+02 0.0063 30.2 8.4 49 72-129 112-160 (526)
384 COG2242 CobL Precorrin-6B meth 25.5 1.3E+02 0.0029 28.3 5.0 51 74-134 73-124 (187)
385 PRK14180 bifunctional 5,10-met 25.4 5E+02 0.011 26.1 9.4 61 51-117 31-95 (282)
386 cd06311 PBP1_ABC_sugar_binding 25.4 4.2E+02 0.0091 24.9 8.8 59 70-133 16-83 (274)
387 PRK13849 putative crown gall t 25.4 1.8E+02 0.004 27.9 6.2 49 54-103 2-50 (231)
388 PF02441 Flavoprotein: Flavopr 25.3 83 0.0018 27.1 3.5 38 53-94 1-38 (129)
389 TIGR03682 arCOG04112 arCOG0411 25.3 2.2E+02 0.0047 28.9 6.9 61 50-119 210-270 (308)
390 TIGR03453 partition_RepA plasm 25.2 2.9E+02 0.0064 28.5 8.1 48 51-99 102-149 (387)
391 COG0041 PurE Phosphoribosylcar 25.0 2.5E+02 0.0053 25.9 6.4 71 54-134 4-77 (162)
392 cd05569 PTS_IIB_fructose PTS_I 24.9 1.2E+02 0.0027 25.0 4.3 56 63-122 7-64 (96)
393 COG1619 LdcA Uncharacterized p 24.9 2.2E+02 0.0047 29.1 6.8 75 52-131 9-94 (313)
394 cd06291 PBP1_Qymf_like Ligand 24.8 3E+02 0.0065 25.7 7.6 53 69-124 15-68 (265)
395 cd01264 PH_melted Melted pleck 24.6 73 0.0016 26.9 2.8 23 22-44 78-100 (101)
396 PRK14178 bifunctional 5,10-met 24.5 7.2E+02 0.016 24.9 10.7 78 34-117 9-90 (279)
397 cd03522 MoeA_like MoeA_like. T 24.5 4.2E+02 0.0091 26.9 8.8 71 50-123 157-231 (312)
398 cd06275 PBP1_PurR Ligand-bindi 24.5 3.4E+02 0.0075 25.3 7.9 50 71-123 17-67 (269)
399 KOG1170 Diacylglycerol kinase 24.4 90 0.0019 35.8 4.2 37 272-308 615-661 (1099)
400 PRK14317 glmM phosphoglucosami 24.4 3.1E+02 0.0068 29.1 8.3 53 32-90 167-219 (465)
401 cd06322 PBP1_ABC_sugar_binding 24.4 2.8E+02 0.0061 25.9 7.3 77 55-134 1-79 (267)
402 PRK14493 putative bifunctional 24.3 1.5E+02 0.0034 29.4 5.6 64 54-124 2-69 (274)
403 cd06297 PBP1_LacI_like_12 Liga 24.3 2.8E+02 0.0061 26.2 7.3 59 69-131 15-74 (269)
404 PRK15414 phosphomannomutase Cp 24.2 4.6E+02 0.01 27.8 9.5 53 33-89 151-203 (456)
405 cd06273 PBP1_GntR_like_1 This 24.1 5.8E+02 0.013 23.7 11.0 98 30-135 100-201 (268)
406 PLN02897 tetrahydrofolate dehy 24.1 7.3E+02 0.016 25.7 10.4 79 34-117 65-150 (345)
407 PLN02616 tetrahydrofolate dehy 24.0 7.3E+02 0.016 25.9 10.5 80 33-117 81-167 (364)
408 PLN02251 pyrophosphate-depende 23.9 87 0.0019 34.6 4.0 70 53-127 129-206 (568)
409 cd05803 PGM_like4 This PGM-lik 23.9 2.9E+02 0.0062 29.2 7.9 51 33-88 150-202 (445)
410 cd06303 PBP1_LuxPQ_Quorum_Sens 23.8 3.2E+02 0.007 26.0 7.7 60 72-134 19-83 (280)
411 PRK14315 glmM phosphoglucosami 23.8 3.9E+02 0.0083 28.3 8.8 51 33-89 156-206 (448)
412 cd06368 PBP1_iGluR_non_NMDA_li 23.8 6.7E+02 0.015 24.3 11.6 76 51-133 126-202 (324)
413 cd01575 PBP1_GntR Ligand-bindi 23.8 4.6E+02 0.01 24.2 8.7 60 70-133 16-76 (268)
414 COG1393 ArsC Arsenate reductas 23.7 2E+02 0.0043 24.9 5.5 58 54-130 2-60 (117)
415 PRK00536 speE spermidine synth 23.7 47 0.001 32.9 1.8 17 112-128 74-91 (262)
416 PF02016 Peptidase_S66: LD-car 23.6 62 0.0013 32.3 2.6 65 58-124 3-76 (284)
417 PRK08857 para-aminobenzoate sy 23.6 2E+02 0.0044 26.6 6.0 45 74-126 14-58 (193)
418 cd06313 PBP1_ABC_sugar_binding 23.6 2.4E+02 0.0053 26.8 6.8 59 73-134 19-79 (272)
419 cd06292 PBP1_LacI_like_10 Liga 23.6 4.3E+02 0.0094 24.7 8.5 57 61-120 7-64 (273)
420 PRK15395 methyl-galactoside AB 23.4 5.7E+02 0.012 25.4 9.6 81 49-133 21-104 (330)
421 cd01540 PBP1_arabinose_binding 23.4 3.4E+02 0.0073 25.8 7.7 62 69-133 15-77 (289)
422 PRK14184 bifunctional 5,10-met 23.4 7.7E+02 0.017 24.8 10.5 60 53-117 32-95 (286)
423 cd01266 PH_Gab Gab (Grb2-assoc 23.2 76 0.0017 26.5 2.8 23 22-44 85-107 (108)
424 cd03089 PMM_PGM The phosphoman 23.2 3.4E+02 0.0075 28.5 8.3 49 33-89 145-193 (443)
425 cd06274 PBP1_FruR Ligand bindi 23.1 2.9E+02 0.0064 25.8 7.2 51 69-122 15-66 (264)
426 PRK09267 flavodoxin FldA; Vali 23.1 1.8E+02 0.0039 26.1 5.4 66 53-132 2-70 (169)
427 PRK10355 xylF D-xylose transpo 23.0 4.8E+02 0.01 26.0 9.0 77 53-133 26-104 (330)
428 cd06279 PBP1_LacI_like_3 Ligan 22.9 3.7E+02 0.008 25.6 7.9 57 69-132 20-76 (283)
429 cd08196 DHQS-like1 Dehydroquin 22.8 2.1E+02 0.0047 29.3 6.5 72 53-131 20-95 (346)
430 PRK14324 glmM phosphoglucosami 22.8 3.8E+02 0.0082 28.4 8.5 51 33-89 155-205 (446)
431 PF00117 GATase: Glutamine ami 22.8 1.9E+02 0.004 26.3 5.5 48 72-126 10-57 (192)
432 cd01231 PH_Lnk LNK-family Plec 22.6 75 0.0016 27.1 2.5 22 23-44 86-107 (107)
433 TIGR02477 PFKA_PPi diphosphate 22.6 84 0.0018 34.5 3.6 71 52-127 99-177 (539)
434 cd04336 YeaK YeaK is an unchar 22.6 1.7E+02 0.0037 25.7 5.1 32 72-103 1-32 (153)
435 cd06292 PBP1_LacI_like_10 Liga 22.5 6.1E+02 0.013 23.6 9.3 94 31-135 107-204 (273)
436 PF01866 Diphthamide_syn: Puta 22.4 2.7E+02 0.0058 28.0 6.9 61 51-119 208-268 (307)
437 cd06350 PBP1_GPCR_family_C_lik 22.3 7.4E+02 0.016 24.2 12.3 95 28-134 142-240 (348)
438 PF02601 Exonuc_VII_L: Exonucl 22.3 3.9E+02 0.0086 26.7 8.2 70 50-125 12-89 (319)
439 cd06287 PBP1_LacI_like_8 Ligan 22.2 6.8E+02 0.015 23.8 11.6 83 51-136 117-202 (269)
440 TIGR01455 glmM phosphoglucosam 22.2 4.4E+02 0.0096 27.7 8.9 51 33-89 152-202 (443)
441 PF13344 Hydrolase_6: Haloacid 22.0 1.4E+02 0.003 24.8 4.1 76 34-128 19-96 (101)
442 PRK15404 leucine ABC transport 22.0 8.3E+02 0.018 24.7 12.3 77 51-133 160-238 (369)
443 cd06346 PBP1_ABC_ligand_bindin 22.0 7.4E+02 0.016 24.1 12.6 76 52-133 137-214 (312)
444 TIGR01382 PfpI intracellular p 21.7 58 0.0012 28.9 1.8 14 111-124 60-73 (166)
445 cd03128 GAT_1 Type 1 glutamine 21.6 1.7E+02 0.0036 21.2 4.2 47 74-127 16-62 (92)
446 PRK14168 bifunctional 5,10-met 21.5 8.5E+02 0.018 24.6 10.4 79 33-117 11-97 (297)
447 TIGR01815 TrpE-clade3 anthrani 21.5 2.6E+02 0.0056 31.9 7.2 60 51-126 515-574 (717)
448 PRK09542 manB phosphomannomuta 21.5 4.3E+02 0.0093 27.9 8.6 50 33-89 145-194 (445)
449 cd06355 PBP1_FmdD_like Peripla 21.3 8.2E+02 0.018 24.3 10.9 78 51-134 132-211 (348)
450 PF00532 Peripla_BP_1: Peripla 21.3 3.7E+02 0.0079 26.2 7.6 77 53-134 2-78 (279)
451 TIGR01737 FGAM_synth_I phospho 21.1 2.2E+02 0.0047 27.2 5.8 50 53-121 1-50 (227)
452 PRK09492 treR trehalose repres 21.1 7.5E+02 0.016 23.8 11.7 67 51-121 61-128 (315)
453 PRK07085 diphosphate--fructose 21.1 96 0.0021 34.2 3.6 71 52-127 102-180 (555)
454 TIGR01752 flav_long flavodoxin 21.0 2.3E+02 0.0051 25.5 5.7 65 55-133 2-69 (167)
455 cd06364 PBP1_CaSR Ligand-bindi 21.0 1E+03 0.023 25.4 12.4 78 51-134 186-267 (510)
456 TIGR02634 xylF D-xylose ABC tr 20.9 4.2E+02 0.0091 25.8 8.0 57 73-133 18-77 (302)
457 TIGR02049 gshA_ferroox glutama 20.9 3E+02 0.0065 28.9 6.8 59 30-88 55-113 (403)
458 cd06319 PBP1_ABC_sugar_binding 20.9 6.9E+02 0.015 23.3 11.9 104 28-134 101-207 (277)
459 cd06286 PBP1_CcpB_like Ligand- 20.9 4.5E+02 0.0097 24.4 7.9 67 61-131 7-74 (260)
460 cd05800 PGM_like2 This PGM-lik 20.7 4.2E+02 0.009 28.0 8.4 51 34-89 153-203 (461)
461 PRK07116 flavodoxin; Provision 20.6 2E+02 0.0042 25.8 5.1 27 53-81 3-29 (160)
462 cd06320 PBP1_allose_binding Pe 20.6 7E+02 0.015 23.3 10.3 100 28-134 102-204 (275)
463 PRK13566 anthranilate synthase 20.5 2.8E+02 0.006 31.7 7.2 60 51-126 525-584 (720)
464 COG1570 XseA Exonuclease VII, 20.5 8.4E+02 0.018 26.2 10.3 97 32-134 104-224 (440)
465 TIGR01481 ccpA catabolite cont 20.4 7.9E+02 0.017 23.8 10.1 82 51-136 175-260 (329)
466 PRK11249 katE hydroperoxidase 20.3 1.6E+02 0.0034 33.7 5.2 67 53-123 598-670 (752)
467 cd06274 PBP1_FruR Ligand bindi 20.3 7E+02 0.015 23.1 10.2 99 29-135 99-201 (264)
468 PRK14186 bifunctional 5,10-met 20.2 9.1E+02 0.02 24.4 10.8 79 34-117 11-96 (297)
469 cd06331 PBP1_AmiC_like Type I 20.2 8.2E+02 0.018 23.9 10.3 77 52-134 132-210 (333)
470 TIGR00557 pdxA 4-hydroxythreon 20.0 4.2E+02 0.0092 27.1 7.8 80 31-118 173-259 (320)
No 1
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=4.1e-79 Score=643.89 Aligned_cols=420 Identities=72% Similarity=1.211 Sum_probs=356.6
Q ss_pred CeeEEEEEEecCCCCCCceEEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHH
Q 037501 1 MYRFTVHSFQKSKTQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFV 80 (438)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~ 80 (438)
||||+||+|+|+|++|++|++..|+|.++|...|+.|+++|+++++.+..|||+++|||||.||+|++.++|++|.|+|+
T Consensus 108 ~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~ 187 (601)
T PLN02204 108 MYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFI 187 (601)
T ss_pred ceeeEEEEeeecccCCCcceeEEEeecCCCHHHHHHHHHHHHHHHhhccCCCceEEEEECCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred hcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcccCCCCCCCCCCccCCCCCCCCCCCC
Q 037501 81 RAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDH 160 (438)
Q Consensus 81 ~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~ 160 (438)
++++++++++|++++||+++++++.+.++.+||+|||||||||||||+|||+.++++.++|+-|.++...-..+......
T Consensus 188 ~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~ 267 (601)
T PLN02204 188 RAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVH 267 (601)
T ss_pred HcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 99999999999999999999988765557899999999999999999999997766667777776555543333333444
Q ss_pred ccccccccCCcCCccCccCCCCccccccccCCCCCC------CCCCCCCCCCCCCCceEEEecCCChhHHHHHcCCCCCH
Q 037501 161 DLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLP------NSNQDTDFRIPSERFRFGIIPAGSTDAIVICTTGARDP 234 (438)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~lGiIP~GSgN~~A~sl~g~~d~ 234 (438)
+++++..+ ..++|++|+|+++.+....+. ++++++.+.++..+++|||||+||||+||+++.+++|+
T Consensus 268 ~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~dp 340 (601)
T PLN02204 268 EPNETVHE-------CDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCTTGERDP 340 (601)
T ss_pred cccccccc-------ccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHccCCCCH
Confidence 45544432 346788888877766443333 67888888889999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhhhhhcccCchHHHHHHHHHHHhCCceE
Q 037501 235 VTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISESEKYRWMGPKRYDYAGTKVFLRHRSYE 314 (438)
Q Consensus 235 ~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~se~~r~lG~~rY~~~~~~~l~~~~~y~ 314 (438)
.+||++|+.|+.++||+++|++|+....++..+..|||+|++|+||+|+|++++|++||||++||++++++.|+++++|+
T Consensus 341 ~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~esek~R~mG~~rY~~~g~k~~~~~r~y~ 420 (601)
T PLN02204 341 VTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKYRWMGPKRYDYAGTKVFLKHRSYE 420 (601)
T ss_pred HHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHHHhhhhcccchHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999987654444445667999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccCCCCCcccccccccC-CCccccceecccccccCCCCCCCCCCcCCCCCCCCCCCCceEEEeccE
Q 037501 315 AEIAYLEVDAEHTNSVSNKGYSCSRAQTFRN-SNKCERVICRRNCNICNTNSVDMSSTATSRTPYFRPEEARWLRSKGRF 393 (438)
Q Consensus 315 ~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~c~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~f 393 (438)
++|++++.+........ .++.+. +...+...|+.+|.+|+..... .+++..|+......+|+++.|.|
T Consensus 421 ~~V~~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~---~~~~~~p~~~~~~~~W~~~~G~f 489 (601)
T PLN02204 421 AEVAYLETESEKSKASS--------EARKRTGPKKSEKIVCRTNCSVCNTKVST---NSPSTTPNSCPEETRWLRSKGRF 489 (601)
T ss_pred EEEEECCeEeeeccccc--------ccccccccccccchhhhhheeeecccccc---cccccccccccccccceeecCce
Confidence 99999987643221100 011122 3445678899999999976321 12334455566778999999999
Q ss_pred EEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccCC
Q 037501 394 LSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYLW 438 (438)
Q Consensus 394 ~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l~ 438 (438)
+++++++++|+|.+||++|+|+||++||+|||++|++|+++.|||
T Consensus 490 ~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L~ 534 (601)
T PLN02204 490 LSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYLW 534 (601)
T ss_pred EEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHHH
Confidence 999999999999999999999999999999999999999998875
No 2
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-73 Score=559.23 Aligned_cols=330 Identities=55% Similarity=0.953 Sum_probs=297.5
Q ss_pred CeeEEEEEEecCCCCCCceEEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHH
Q 037501 1 MYRFTVHSFQKSKTQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFV 80 (438)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~ 80 (438)
|||||||.|++++++ +|++++++|.+.+.++|+.|.+.|+..|.+...|||+++|||||++|||++.++|++|.++|-
T Consensus 109 ~y~ftvh~v~~~~k~--~W~laq~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~F~ 186 (516)
T KOG1115|consen 109 MYRFTVHGVQSSPKE--LWNLAQFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWETVSKIFI 186 (516)
T ss_pred ceEEEEEEEEcCchh--hcchhcceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhhhhhhEE
Confidence 899999999999875 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcccCCCCCCCCCCccCCCCCCCCCCCC
Q 037501 81 RAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDH 160 (438)
Q Consensus 81 ~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~ 160 (438)
.+.++++|++||+++||+|++.++.+.++..||+||+|||||.|||++||++.+.+.
T Consensus 187 la~v~tkvivTErAnhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~llrtQ~----------------------- 243 (516)
T KOG1115|consen 187 LAKVNTKVIVTERANHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGYLLRTQE----------------------- 243 (516)
T ss_pred eeecceeEEEEccccchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhhhhhhhh-----------------------
Confidence 999999999999999999999999888899999999999999999999998887421
Q ss_pred ccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCceEEEecCCChhHHHHHcCCCCCHHHHHHH
Q 037501 161 DLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFRFGIIPAGSTDAIVICTTGARDPVTSALH 240 (438)
Q Consensus 161 ~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~ 240 (438)
++| +.+.+| +..+..+.++||||||||+|+++.++.+++|++++|+|
T Consensus 244 ~ag-------------------------------~~i~~P--~~~lv~~~~RfGiIpAGStd~iv~~t~gt~D~~TSAlH 290 (516)
T KOG1115|consen 244 VAG-------------------------------FRIEDP--DHPLVSERPRFGIIPAGSTDAIVMCTTGTRDPVTSALH 290 (516)
T ss_pred hcC-------------------------------cccCCC--CCcccCCCceeeeecCCCcCeEEEEeccCCccccceee
Confidence 111 111122 22233468999999999999999999999999999999
Q ss_pred HHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhhhhhcccCchHHHHHHHHHHHhCCceEEEEEEe
Q 037501 241 IVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISESEKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYL 320 (438)
Q Consensus 241 i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~se~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~ 320 (438)
|+.|+..-+|+++|... +.+.||.+|.+||||+|||..+||||||||+.||+++++|++++++.|+++|+|+
T Consensus 291 I~lG~~l~vDVctVht~--------~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~YegeVsFl 362 (516)
T KOG1115|consen 291 IILGRKLFVDVCTVHTI--------EKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYEGEVSFL 362 (516)
T ss_pred eEeccceeeeeeeeeec--------chheeeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccceEEEec
Confidence 99999999999999863 4678999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCCCCcCCCCCCCCCCCCceEEEeccEEEEEEee
Q 037501 321 EVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMSSTATSRTPYFRPEEARWLRSKGRFLSVGAAI 400 (438)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n 400 (438)
+...+. .|.+.|+.|..... ....|....|+|+.|++++
T Consensus 363 pa~sen--------------------------~~qe~~~~g~~~~~---------------~~k~Wq~~~g~Fl~V~c~a 401 (516)
T KOG1115|consen 363 PAESEN--------------------------PCQEPCPSGASLHT---------------RSKTWQRNTGRFLKVLCRA 401 (516)
T ss_pred ccccCC--------------------------chhccccccCCccc---------------CcchhhhhhhheeeeeEee
Confidence 886431 36667777765433 2457988999999999999
Q ss_pred cCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 401 ISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 401 ~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
+||+|+.+|.|++|.++++||.+||+++|.|||+.++
T Consensus 402 ipciC~~~PrGLaP~T~LndGs~dLil~R~~SRF~fi 438 (516)
T KOG1115|consen 402 IPCICNSKPRGLAPSTTLNDGSEDLILCRTKSRFLFI 438 (516)
T ss_pred ccccccCCCCCcCCccccCCCccceeeeecccchHHH
Confidence 9999999999999999999999999999999999876
No 3
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=7.5e-58 Score=481.73 Aligned_cols=318 Identities=27% Similarity=0.487 Sum_probs=258.2
Q ss_pred CCCCceEEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeC
Q 037501 14 TQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 14 ~~~~~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~ 92 (438)
..+++|++++|+|.+.+.+.|+.|+++|++++... .|||+++|||||.||+|++.++|+ +|+++|+++++++++++|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~ 152 (481)
T PLN02958 74 GSAGALARKDFVFEPLSDESRRLWCQKLRDYLDSL-GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK 152 (481)
T ss_pred CCCCCceeeeEEEeCCCHHHHHHHHHHHHHHHhhc-cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35578999999999999999999999999999754 799999999999999999999986 6999999999999999999
Q ss_pred CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcC
Q 037501 93 RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQH 172 (438)
Q Consensus 93 ~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~ 172 (438)
+++||+++++++. +.+||+|||||||||||||+|||+.++.
T Consensus 153 ~~ghA~~la~~~~---~~~~D~VV~vGGDGTlnEVvNGL~~~~~------------------------------------ 193 (481)
T PLN02958 153 YQLHAKEVVRTMD---LSKYDGIVCVSGDGILVEVVNGLLERED------------------------------------ 193 (481)
T ss_pred CccHHHHHHHHhh---hcCCCEEEEEcCCCHHHHHHHHHhhCcc------------------------------------
Confidence 9999999998863 4689999999999999999999987631
Q ss_pred CccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCceEEEecCCChhHHHHHc----CCCCCHHHHHHHHHcCCeEE
Q 037501 173 DEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFRFGIIPAGSTDAIVICT----TGARDPVTSALHIVLGKRVC 248 (438)
Q Consensus 173 ~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lGiIP~GSgN~~A~sl----~g~~d~~~aa~~i~~g~~~~ 248 (438)
+... .++||||||+||||+||++| +.+.++.+|+++|+.|+.++
T Consensus 194 --------~~~~------------------------~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~ 241 (481)
T PLN02958 194 --------WKTA------------------------IKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCS 241 (481)
T ss_pred --------cccc------------------------ccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceE
Confidence 1111 26899999999999999999 88899999999999999999
Q ss_pred eeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhhhhhcccCchHHHHHHHHHHHhCCceEEEEEEecccccccc
Q 037501 249 LDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISESEKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTN 328 (438)
Q Consensus 249 lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~se~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~ 328 (438)
+|++++++++ ..+|+++++++||+|+|+.+++++||||++||.+++++.|+++++|+++|+|++.+..+..
T Consensus 242 vDlg~v~~~~---------~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~~~a~~~~~~ 312 (481)
T PLN02958 242 LDVATILQGE---------TKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISFVPAPGFEAY 312 (481)
T ss_pred EeEEEEEcCC---------ceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEEEeccccccc
Confidence 9999997421 1234589999999999999999999999999999999999999999999999887643211
Q ss_pred ccCCCCCcccccccccCCCccccceecccccccCCCCCCCC--CCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCC
Q 037501 329 SVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMS--STATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNE 406 (438)
Q Consensus 329 ~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~--~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~ 406 (438)
..+. .|..+........ .......+..+....+|+++++.|++++++|++++|+
T Consensus 313 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Gg 368 (481)
T PLN02958 313 GEPT------------------------SYNGESTSKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGE 368 (481)
T ss_pred cccc------------------------cccccccccccccccccccccCCccccCCccceEeecceeEEeeccCcccCC
Confidence 1110 0111100000000 0000000111123447999999999999999999997
Q ss_pred CCCCCcCccCccCCCeEEEEEEcCCCccccCC
Q 037501 407 RAPDGLVVDAHLSDGFMHLILIKDCPRALYLW 438 (438)
Q Consensus 407 ~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l~ 438 (438)
.. .++|.|+++||+|||++|+++|++.+|+
T Consensus 369 g~--~iaP~A~l~DG~LDlviv~~~s~~~lL~ 398 (481)
T PLN02958 369 DT--LAAPDAKFSDGYLDLILIKDCPKLALLA 398 (481)
T ss_pred Cc--ccCCcccCCCCeEEEEEEcCCCHHHHHH
Confidence 63 4999999999999999999999988763
No 4
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-51 Score=422.54 Aligned_cols=310 Identities=26% Similarity=0.491 Sum_probs=235.5
Q ss_pred hccCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 47 MEVGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 47 ~~~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
...+|+|+++|||||++|+|+++++|. +|+|+|.+|++++++++|++++||+|+++.+ ++.+||+||||||||++|
T Consensus 174 ~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~---dl~kyDgIv~vsGDGl~h 250 (579)
T KOG1116|consen 174 DSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTL---DLGKYDGIVCVSGDGLLH 250 (579)
T ss_pred cccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhh---hccccceEEEecCCcCHH
Confidence 345799999999999999999999998 6999999999999999999999999999987 689999999999999999
Q ss_pred HHHHhhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCC
Q 037501 126 EILNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFR 205 (438)
Q Consensus 126 EVvNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (438)
||+|||+.|. ||..+
T Consensus 251 EVlNGLl~R~--------------------------------------------D~~~~--------------------- 265 (579)
T KOG1116|consen 251 EVLNGLLERP--------------------------------------------DWEAA--------------------- 265 (579)
T ss_pred Hhhhcccccc--------------------------------------------chhhH---------------------
Confidence 9999999983 33333
Q ss_pred CCCCCceEEEecCCChhHHHHHcCCCCC---HHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchh
Q 037501 206 IPSERFRFGIIPAGSTDAIVICTTGARD---PVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYG 282 (438)
Q Consensus 206 ~~~~~~~lGiIP~GSgN~~A~sl~g~~d---~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~a 282 (438)
.++||||||+||||+||+++++..+ +..|++.|++|...++|+.++.... ...+|++.+++|||.|
T Consensus 266 ---~klPigiiP~GSGNala~Sv~~~~~~~~~~~a~l~iirg~~t~~dv~~v~~~~--------~~~~fSfLs~~wGlIA 334 (579)
T KOG1116|consen 266 ---VKLPIGIIPCGSGNALAKSVLWTNGPDLPLLATLLIIRGRLTPMDVSVVEYAG--------KDRHFSFLSAAWGLIA 334 (579)
T ss_pred ---hcCceeEeecCCccHHHHHhhcccCcccchHHHHHHHccCCCchheeehhhcc--------CcceEEEEeeeeeeEE
Confidence 3799999999999999999988774 8889999999999999999997521 1237899999999999
Q ss_pred hhhhhhhhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCC--CCC----cccccccccCCCccccceecc
Q 037501 283 DVISESEKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSN--KGY----SCSRAQTFRNSNKCERVICRR 356 (438)
Q Consensus 283 dV~~~se~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~--~~~----~~~g~~~~~~~~~~~~~~c~~ 356 (438)
||+.+||++||||++||.++++..|+.+|+|+++|+|++...+.....+. .++ .+.+..--..++......-..
T Consensus 335 DiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~ 414 (579)
T KOG1116|consen 335 DVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGKSAEPLPAHELEAADSEGCLSTHADTEPSEYPRLSVPK 414 (579)
T ss_pred ecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEecccccccCcccchhhccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999976543221110 000 000000000000000000011
Q ss_pred cccccCCCCCCC---CCCcC---CCCC-CCCCCCCceEEEec-cEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEE
Q 037501 357 NCNICNTNSVDM---SSTAT---SRTP-YFRPEEARWLRSKG-RFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILI 428 (438)
Q Consensus 357 ~c~~c~~~~~~~---~~~~~---~~~~-~~~~~~~~W~~~~g-~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlv 428 (438)
+|+.-...+.-. .+..+ ...| ...+.+..|.++.| +|+++.+.-.++.+.... ++|.|.++||+|||+++
T Consensus 415 ~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~sy~~~d~~--~~P~A~~~dg~I~lv~~ 492 (579)
T KOG1116|consen 415 MSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLSYLGADMK--FAPAARPDDGLIHLVIV 492 (579)
T ss_pred cCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhhhccCCcc--cccccccCCCeEEEEEE
Confidence 111111111000 00000 1112 24455677999999 999999999999887533 89999999999999999
Q ss_pred cCC-CccccC
Q 037501 429 KDC-PRALYL 437 (438)
Q Consensus 429 r~~-s~~~~l 437 (438)
+.. +|.+++
T Consensus 493 ~~~~~r~~ll 502 (579)
T KOG1116|consen 493 RAGGSRTQLL 502 (579)
T ss_pred ccCCcHHHHH
Confidence 876 665543
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=2.9e-43 Score=351.59 Aligned_cols=235 Identities=20% Similarity=0.294 Sum_probs=208.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.+++++||+||.||++++.+.|+++.+.|++++++++++.|++++|+.++++++. ..++|.||++|||||||||+|+
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~---~~~~d~vvv~GGDGTi~evv~~ 83 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAAL---AKGTDALVVVGGDGVISNALQV 83 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHH---hcCCCEEEEECCchHHHHHhHH
Confidence 4589999999999999999999999999999999999999999999999998874 3678999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|+.. .
T Consensus 84 l~~~---------------------------------------------------------------------------~ 88 (306)
T PRK11914 84 LAGT---------------------------------------------------------------------------D 88 (306)
T ss_pred hccC---------------------------------------------------------------------------C
Confidence 9642 4
Q ss_pred ceEEEecCCChhHHHHHcCCCC-CHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhhh
Q 037501 211 FRFGIIPAGSTDAIVICTTGAR-DPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISESE 289 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~-d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~se 289 (438)
+||||||+||+|+||++|+.+. ++.+++..|..|+++++|+++++... ...+||+|++++||+++|....+
T Consensus 89 ~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~--------~~~~~f~n~~~~G~~a~v~~~~~ 160 (306)
T PRK11914 89 IPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGWTETVDLGRIQDDD--------GIVKWFGTVAATGFDSLVTDRAN 160 (306)
T ss_pred CcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCCceEEEEEEEecCC--------CCcEEEEEEEeeehHHHHHHHHH
Confidence 6899999999999999999986 79999999999999999999998521 12389999999999999999888
Q ss_pred hhcc-cCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCC
Q 037501 290 KYRW-MGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDM 368 (438)
Q Consensus 290 ~~r~-lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~ 368 (438)
+.|| +|+++|.+++++.++++++|+++|++++..
T Consensus 161 ~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~--------------------------------------------- 195 (306)
T PRK11914 161 RMRWPHGRMRYNLAMLAELSKLRPLPFRLVLDGTE--------------------------------------------- 195 (306)
T ss_pred hccccCCchhhHHHHHHHHHhcCCCcEEEEEeCCe---------------------------------------------
Confidence 8877 799999999999999999999999886521
Q ss_pred CCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 369 SSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
.++++++++.++|.+++|+.. .++|.|.++||.|||+++++.++++++
T Consensus 196 -------------------~~~~~~~~~~v~N~~~~GG~~--~~~p~a~~~DG~ldv~~v~~~~~~~~l 243 (306)
T PRK11914 196 -------------------EIVTDLTLAAFGNTRSYGGGM--LICPNADHTDGLLDITMVQSASRTRLL 243 (306)
T ss_pred -------------------EEEeeEEEEEEeCcccccCCc--eeCCCCcCCCCcEEEEEEecCCHHHHH
Confidence 125678889999999999753 389999999999999999999988765
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.5e-42 Score=343.58 Aligned_cols=228 Identities=18% Similarity=0.249 Sum_probs=199.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+++++||+||.||++++.+.|+++++.|+++++++.++.|+..+++ +.++++. ..++|.||++|||||||||+|||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~---~~~~d~vi~~GGDGTv~evv~gl 76 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDI---DESYKYILIAGGDGTVDNVVNAM 76 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHh---hcCCCEEEEECCccHHHHHHHHH
Confidence 3689999999999999888999999999999999988888776654 4555543 25789999999999999999999
Q ss_pred hhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 037501 132 LSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERF 211 (438)
Q Consensus 132 ~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (438)
+... .++
T Consensus 77 ~~~~-------------------------------------------------------------------------~~~ 83 (295)
T PRK13059 77 KKLN-------------------------------------------------------------------------IDL 83 (295)
T ss_pred HhcC-------------------------------------------------------------------------CCC
Confidence 8642 257
Q ss_pred eEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--h
Q 037501 212 RFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--E 289 (438)
Q Consensus 212 ~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e 289 (438)
||||||+||+|+||++|+.+.|+.+|+..|..|+++++|++++++ +||+|++|+||+++|+... +
T Consensus 84 ~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~v~~-------------~~f~n~~~~G~~a~v~~~~~~~ 150 (295)
T PRK13059 84 PIGILPVGTANDFAKFLGMPTDIGEACEQILKSKPKKVDLGKIND-------------KYFINVASTGLFTDVSQKTDVN 150 (295)
T ss_pred cEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCCcEEeeEEEECC-------------EEEEEEEeeeechhhhhhccHH
Confidence 899999999999999999999999999999999999999999975 8999999999999999885 4
Q ss_pred hhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCC
Q 037501 290 KYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMS 369 (438)
Q Consensus 290 ~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~ 369 (438)
+++++|+++|.+++++.++++++|+++|++++.
T Consensus 151 ~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~----------------------------------------------- 183 (295)
T PRK13059 151 LKNTIGKLAYYLKGLEELPNFRKLKVKVTSEEV----------------------------------------------- 183 (295)
T ss_pred HhhCcchHHHHHHHHHHHhcCCCeeEEEEECCE-----------------------------------------------
Confidence 567789999999999999999999999987432
Q ss_pred CCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 370 STATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
++++++.++.++|.+++|+. .++|.|.++||.|||+++++.+++.++
T Consensus 184 ------------------~~~~~~~~~~v~N~~~~Gg~---~~~p~a~~~DG~Ldv~i~~~~~~~~~l 230 (295)
T PRK13059 184 ------------------NFDGDMYLMLVFNGQTAGNF---NLAYKAEVDDGLLDVIIIKACPIIDLI 230 (295)
T ss_pred ------------------EEEeeEEEEEEEcCccccCc---ccCCcccCCCCeEEEEEEcCCCHHHHH
Confidence 12567788889999998863 389999999999999999999998765
No 7
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.3e-42 Score=349.52 Aligned_cols=232 Identities=23% Similarity=0.307 Sum_probs=203.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC-CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ-RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
+|+++||+||.||++++.+.|++++++|+.++++++++.|+ +.+|+.++++++. ..++|.||++|||||+|||+||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~---~~~~d~vvv~GGDGTl~evvng 78 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAA---EAGFDLIIAAGGDGTINEVVNG 78 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHh---hcCCCEEEEECCCCHHHHHHHH
Confidence 47899999999999999999999999999999999988776 5689999998874 2578999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|+... ..
T Consensus 79 l~~~~-------------------------------------------------------------------------~~ 85 (334)
T PRK13055 79 IAPLE-------------------------------------------------------------------------KR 85 (334)
T ss_pred HhhcC-------------------------------------------------------------------------CC
Confidence 98642 24
Q ss_pred ceEEEecCCChhHHHHHcCCCC-CHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh-
Q 037501 211 FRFGIIPAGSTDAIVICTTGAR-DPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES- 288 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~-d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s- 288 (438)
++|||||+||+|+||++|+.+. |+.+++..|..|+++++|++++++ .+||+|++|+||+++|....
T Consensus 86 ~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~~~~vD~g~v~~------------~~~F~n~ag~G~da~v~~~~~ 153 (334)
T PRK13055 86 PKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQTIKMDIGRANE------------DKYFINIAAGGSLTELTYSVP 153 (334)
T ss_pred CcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCCcEEeeEEEECC------------CcEEEEEehhccchHHHHhcC
Confidence 6899999999999999999999 899999999999999999999962 18999999999999998763
Q ss_pred -hhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCC
Q 037501 289 -EKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVD 367 (438)
Q Consensus 289 -e~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~ 367 (438)
..++++|+++|.+++++.|+++++|+++|++++..
T Consensus 154 ~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d~~~-------------------------------------------- 189 (334)
T PRK13055 154 SQLKSMFGYLAYLAKGAELLPRVSPVPVRITYDEGV-------------------------------------------- 189 (334)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCeeEEEEECCEE--------------------------------------------
Confidence 34567899999999999999999999999885421
Q ss_pred CCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccCC
Q 037501 368 MSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYLW 438 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l~ 438 (438)
.++++.++.++|.+++|+.. .++|.|.++||.||++++++.+++++++
T Consensus 190 ---------------------~~~~~~~~~v~n~~~~Gg~~--~~~p~a~~~DG~ldv~i~~~~~~~~~l~ 237 (334)
T PRK13055 190 ---------------------FEGKISMFFLALTNSVGGFE--QIVPDAKLDDGKFTLIIVKTANLFELLH 237 (334)
T ss_pred ---------------------EEEEEEEEEEEcCcccCCcc--ccCCCCcCCCceEEEEEEcCCCHHHHHH
Confidence 25677888899999998753 3899999999999999999999987653
No 8
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.4e-42 Score=343.05 Aligned_cols=230 Identities=25% Similarity=0.343 Sum_probs=204.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
++|++||+||.||++++.+.|+++.+.|++++++++++.|++++|+.++++++. .+++|.||++|||||+|||+|||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~---~~~~d~vvv~GGDGTl~~vv~gl 77 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAV---ERKFDLVIAAGGDGTLNEVVNGI 77 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHH---hcCCCEEEEEcCCCHHHHHHHHH
Confidence 378999999999999988899999999999999999999999999999998875 25789999999999999999999
Q ss_pred hhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 037501 132 LSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERF 211 (438)
Q Consensus 132 ~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (438)
+.+. ..+
T Consensus 78 ~~~~-------------------------------------------------------------------------~~~ 84 (304)
T PRK13337 78 AEKE-------------------------------------------------------------------------NRP 84 (304)
T ss_pred hhCC-------------------------------------------------------------------------CCC
Confidence 8652 246
Q ss_pred eEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--h
Q 037501 212 RFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--E 289 (438)
Q Consensus 212 ~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e 289 (438)
+|||||+||+|+||++|+.+.++.+|+..+..|.++++|++++++ +||+|++|+||+++|.... .
T Consensus 85 ~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~~~~vDlg~vn~-------------~~fln~~g~G~~a~v~~~~~~~ 151 (304)
T PRK13337 85 KLGIIPVGTTNDFARALHVPRDIEKAADVIIEGHTVPVDIGKANN-------------RYFINIAGGGRLTELTYEVPSK 151 (304)
T ss_pred cEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCCeEEEEEEEECC-------------EEEEeeehhhHHHHHHHhcCHH
Confidence 899999999999999999999999999999999999999999985 8999999999999998764 4
Q ss_pred hhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCC
Q 037501 290 KYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMS 369 (438)
Q Consensus 290 ~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~ 369 (438)
.++++|+++|.+.+++.++++++|+++|+.++.
T Consensus 152 ~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~d~~----------------------------------------------- 184 (304)
T PRK13337 152 LKTMLGQLAYYLKGIEMLPSLKATDVRIEYDGK----------------------------------------------- 184 (304)
T ss_pred HhcCcccHHHHHHHHHHHhhCCCceEEEEECCe-----------------------------------------------
Confidence 566889999999999999999999999887432
Q ss_pred CCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 370 STATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
..++++.++.++|.+++|+. ..++|.|.++||.||++++++.++++++
T Consensus 185 ------------------~~~~~~~~~~v~n~~~~gg~--~~~~p~a~~~DG~ldv~iv~~~~~~~~l 232 (304)
T PRK13337 185 ------------------LFQGEIMLFLLGLTNSVGGF--EKLAPDASLDDGYFDLIIVKKANLAELI 232 (304)
T ss_pred ------------------EEEeEEEEEEEEcCcccCCc--cccCCcccCCCCeEEEEEEcCCCHHHHH
Confidence 12567888999999998875 3489999999999999999999988765
No 9
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.7e-42 Score=341.41 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=199.0
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+++++||+||.||++++.+.|++++..|+.. ++++++.|++++||.++++++. .+++|.||++|||||+|||+|+|
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~---~~~~d~vv~~GGDGTl~evv~~l 77 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE-MDLDIYLTTPEIGADQLAQEAI---ERGAELIIASGGDGTLSAVAGAL 77 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc-CceEEEEccCCCCHHHHHHHHH---hcCCCEEEEECChHHHHHHHHHH
Confidence 4789999999999999888899999999874 8999999999999999998875 36789999999999999999999
Q ss_pred hhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 037501 132 LSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERF 211 (438)
Q Consensus 132 ~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (438)
+.+ .+
T Consensus 78 ~~~---------------------------------------------------------------------------~~ 82 (300)
T PRK00861 78 IGT---------------------------------------------------------------------------DI 82 (300)
T ss_pred hcC---------------------------------------------------------------------------CC
Confidence 753 45
Q ss_pred eEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--h
Q 037501 212 RFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--E 289 (438)
Q Consensus 212 ~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e 289 (438)
+||+||+||+|+||++|+.+.++.+|+..|..|.++++|++++++ +||+|++++||+++|.... +
T Consensus 83 ~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~~~~iDlg~vn~-------------~~fin~a~~G~~a~v~~~~~~~ 149 (300)
T PRK00861 83 PLGIIPRGTANAFAAALGIPDTIEEACRTILQGKTRRVDVAYCNG-------------QPMILLAGIGFEAETVEEADRE 149 (300)
T ss_pred cEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCCcEEeeEEEECC-------------EEEEEEEeccHHHHHHHHhhHH
Confidence 899999999999999999999999999999999999999999975 8999999999999999875 3
Q ss_pred hhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCC
Q 037501 290 KYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMS 369 (438)
Q Consensus 290 ~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~ 369 (438)
+++++|.++|.+++++.++++++|+++|++++..
T Consensus 150 ~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~dg~~---------------------------------------------- 183 (300)
T PRK00861 150 AKNRFGILAYILSGLQQLRELESFEVEIETEDQI---------------------------------------------- 183 (300)
T ss_pred HHhcccHHHHHHHHHHHhccCCCeeEEEEECCeE----------------------------------------------
Confidence 4567899999999999999999999999885421
Q ss_pred CCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 370 STATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
++.+.+++.++|.++.+.....+ .|.|.++||.|||+++++.++++++
T Consensus 184 -------------------~~~~~~~i~v~N~~~~~~~~~~g-~p~a~~~DG~ldv~iv~~~~~~~~l 231 (300)
T PRK00861 184 -------------------ITTNAVAVTVANAAPPTSVLAQG-PGAVIPDDGLLDVTIVAPKNLAEAV 231 (300)
T ss_pred -------------------EEEEEEEEEEECCCCcccccccC-CCCCCCCCceEEEEEEcCCCHHHHH
Confidence 24566778899997654332222 5799999999999999999998764
No 10
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.9e-41 Score=332.23 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=195.5
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
+||+||.||+++ +.|+++++.|+.+++++.+..|++++|+.++++++. .++|.||++|||||||||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~----~~~d~iiv~GGDGTv~~v~~~l~~~- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYA----DGVDLVIVGGGDGTLNAAAPALVET- 73 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH----cCCCEEEEECchHHHHHHHHHHhcC-
Confidence 589999999886 578899999999999999999999999999998742 5789999999999999999999743
Q ss_pred cCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCceEEE
Q 037501 136 YKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFRFGI 215 (438)
Q Consensus 136 ~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lGi 215 (438)
.+|||+
T Consensus 74 --------------------------------------------------------------------------~~~lgi 79 (287)
T PRK13057 74 --------------------------------------------------------------------------GLPLGI 79 (287)
T ss_pred --------------------------------------------------------------------------CCcEEE
Confidence 458999
Q ss_pred ecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--hhhcc
Q 037501 216 IPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--EKYRW 293 (438)
Q Consensus 216 IP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e~~r~ 293 (438)
||+||+|+||++|+++.++.+++..|..|+++++|++++++ +||+|++|+||+|+|+... ++++.
T Consensus 80 iP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~~~~vD~g~~~~-------------~~f~n~~g~G~da~v~~~~~~~~k~~ 146 (287)
T PRK13057 80 LPLGTANDLARTLGIPLDLEAAARVIATGQVRRIDLGWVNG-------------HYFFNVASLGLSAELARRLTKELKRR 146 (287)
T ss_pred ECCCCccHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEECC-------------EEEEEEEecCccHHHHHHhhHHhhcc
Confidence 99999999999999999999999999999999999999974 8999999999999999763 45566
Q ss_pred cCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCCCCcC
Q 037501 294 MGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMSSTAT 373 (438)
Q Consensus 294 lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~~~~~ 373 (438)
+|+++|.+++++.|+++++|+++|+.++..
T Consensus 147 ~G~~aY~~~~~~~l~~~~~~~~~l~~d~~~-------------------------------------------------- 176 (287)
T PRK13057 147 WGTLGYAIAALRVLRRSRPFTAEIEHDGRT-------------------------------------------------- 176 (287)
T ss_pred CChhHHHHHHHHHHhhCCCeEEEEEECCEE--------------------------------------------------
Confidence 899999999999999999999999774321
Q ss_pred CCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 374 SRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 374 ~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
.+.+++++.++|.+++|+.. .++|.|.++||.|||++++..++++++
T Consensus 177 ---------------~~~~~~~~~v~N~~~~gg~~--~~~p~a~~~DG~ldv~~v~~~~~~~~l 223 (287)
T PRK13057 177 ---------------ERVKTLQVAVGNGRYYGGGM--TVAHDATIDDGRLDLYSLEVAHWWRLL 223 (287)
T ss_pred ---------------EEEEEEEEEEecCcccCCCc--ccCCCCCCCCceEEEEEecCCCHHHHH
Confidence 24567778899999999753 389999999999999999999988764
No 11
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.5e-40 Score=330.31 Aligned_cols=221 Identities=19% Similarity=0.263 Sum_probs=189.8
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++++|+||.+|. .+.|+++.+.|++++++++++.|++++||.++++++. ..++|.||++|||||+|||+|||+.
T Consensus 1 ~~~~I~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~---~~~~d~vv~~GGDGTi~ev~ngl~~ 74 (293)
T TIGR03702 1 KALLILNGKQAD---NEDVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEAL---ALGVSTVIAGGGDGTLREVATALAQ 74 (293)
T ss_pred CEEEEEeCCccc---hhHHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHH---HcCCCEEEEEcCChHHHHHHHHHHh
Confidence 578999999873 3457777888999999999999999999999998874 3668999999999999999999986
Q ss_pred cccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCceE
Q 037501 134 SRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFRF 213 (438)
Q Consensus 134 ~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (438)
+... ..+||
T Consensus 75 ~~~~-----------------------------------------------------------------------~~~~l 83 (293)
T TIGR03702 75 IRDD-----------------------------------------------------------------------AAPAL 83 (293)
T ss_pred hCCC-----------------------------------------------------------------------CCCcE
Confidence 5210 14689
Q ss_pred EEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--hhh
Q 037501 214 GIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--EKY 291 (438)
Q Consensus 214 GiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e~~ 291 (438)
||||+||+|+|||+|+.+.|+.+++..|..|+++++|+++++. .+||+|++|+||+|+|+.+. .++
T Consensus 84 giiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~~~~iDlg~v~~------------~~~f~n~~~~G~da~v~~~~~~~~k 151 (293)
T TIGR03702 84 GLLPLGTANDFATAAGIPLEPAKALKLALNGAAQPIDLARVNG------------KHYFLNMATGGFGTRVTTETSEKLK 151 (293)
T ss_pred EEEcCCchhHHHHhcCCCCCHHHHHHHHHhCCceeeeEEEECC------------ccEEEEEeecccchHhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999973 17999999999999998774 345
Q ss_pred cccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCCCC
Q 037501 292 RWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMSST 371 (438)
Q Consensus 292 r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~~~ 371 (438)
+++|.++|.+++++.++++++++++|+.++.
T Consensus 152 ~~~G~~aY~~~~l~~l~~~~~~~~~i~~~~~------------------------------------------------- 182 (293)
T TIGR03702 152 KALGGAAYLITGLTRFSELTAASCEFRGPDF------------------------------------------------- 182 (293)
T ss_pred hccchHHHHHHHHHHHhhCCCeEEEEEECCE-------------------------------------------------
Confidence 5689999999999999999999988865321
Q ss_pred cCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcC
Q 037501 372 ATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKD 430 (438)
Q Consensus 372 ~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~ 430 (438)
+ .+++++++.++|.+++|+.. .++|.|.++||.|||+++++
T Consensus 183 -------------~---~~~~~~~~~v~N~~~~GGg~--~i~P~A~~~DG~Ldv~~v~~ 223 (293)
T TIGR03702 183 -------------H---WEGDFLALGIGNGRQAGGGQ--VLCPDALINDGLLDVRILPA 223 (293)
T ss_pred -------------E---EEeeEEEEEEECCCcCCCCc--eeCCCCccCCceEEEEEeCC
Confidence 1 25678889999999999753 48999999999999999987
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=2.9e-40 Score=329.36 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=193.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.+|++++|+||+++ +.+.|.++.+.|+++++++++..|++++||.++++++.. .++|.||++|||||||||+||
T Consensus 2 ~~~~~~~i~N~~~~---~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~---~~~d~vvv~GGDGTl~evv~~ 75 (300)
T PRK13054 2 TFPKSLLILNGKSA---GNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALA---LGVATVIAGGGDGTINEVATA 75 (300)
T ss_pred CCceEEEEECCCcc---chHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHH---cCCCEEEEECCccHHHHHHHH
Confidence 36899999998875 346677888889999999999999999999999988753 578999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|+.+... .+
T Consensus 76 l~~~~~~-----------------------------------------------------------------------~~ 84 (300)
T PRK13054 76 LAQLEGD-----------------------------------------------------------------------AR 84 (300)
T ss_pred HHhhccC-----------------------------------------------------------------------CC
Confidence 9865200 25
Q ss_pred ceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh-h
Q 037501 211 FRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES-E 289 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s-e 289 (438)
++|||||+||+|+||++|+.+.|+.+|+..|..|+++++|++++++ .+||+|++|+||+++|..+. +
T Consensus 85 ~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~~~~iDlg~v~~------------~~~f~n~~~~G~~a~v~~~~~~ 152 (300)
T PRK13054 85 PALGILPLGTANDFATAAGIPLEPDKALKLAIEGRAQPIDLARVND------------RTYFINMATGGFGTRVTTETPE 152 (300)
T ss_pred CcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCCceEEEEEEEcC------------ceEEEEEeecchhHHHHHhhHH
Confidence 7899999999999999999999999999999999999999999974 13999999999999998775 3
Q ss_pred h-hcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCC
Q 037501 290 K-YRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDM 368 (438)
Q Consensus 290 ~-~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~ 368 (438)
+ ++.+|+++|.+++++.++++++|+++|+.++.
T Consensus 153 ~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~d~~---------------------------------------------- 186 (300)
T PRK13054 153 KLKAALGGVAYLIHGLMRMDTLKPDRCEIRGPDF---------------------------------------------- 186 (300)
T ss_pred HHHhccchHHHHHHHHHHHhhCCCeEEEEEeCCc----------------------------------------------
Confidence 3 34689999999999999999999999876431
Q ss_pred CCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcC
Q 037501 369 SSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKD 430 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~ 430 (438)
.| ++++.++.++|.+++|+.. .++|.|.++||.||++++++
T Consensus 187 ----------------~~---~~~~~~~~v~N~~~~ggg~--~~~p~a~~~DG~ldv~~~~~ 227 (300)
T PRK13054 187 ----------------HW---QGDALVIGIGNGRQAGGGQ--QLCPEALINDGLLDLRILPA 227 (300)
T ss_pred ----------------EE---EeeEEEEEEECCCcCCCCc--ccCCCCcCCCCeEEEEEECC
Confidence 12 5788899999999999753 48999999999999999988
No 13
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=2.1e-40 Score=330.63 Aligned_cols=231 Identities=28% Similarity=0.401 Sum_probs=204.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
+.+++.+|+||.||++++.+.|+++++.|+.+++++.++.|+..+||.++++++.. .+||.||++|||||||||+||
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~---~~~D~via~GGDGTv~eving 77 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAV---EGYDTVIAAGGDGTVNEVANG 77 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHh---cCCCEEEEecCcchHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999863 589999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|..++ .
T Consensus 78 l~~~~--------------------------------------------------------------------------~ 83 (301)
T COG1597 78 LAGTD--------------------------------------------------------------------------D 83 (301)
T ss_pred HhcCC--------------------------------------------------------------------------C
Confidence 99763 1
Q ss_pred ceEEEecCCChhHHHHHcCCCCC-HHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhhh
Q 037501 211 FRFGIIPAGSTDAIVICTTGARD-PVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISESE 289 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~d-~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~se 289 (438)
.+|||||+||+|+||++|+++.+ +.+|+..|..|+++.+|+++++. .+||+|++++||++++++..+
T Consensus 84 ~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~~~~vDlg~~~~------------~~~fin~a~~G~~a~~~~~~~ 151 (301)
T COG1597 84 PPLGILPGGTANDFARALGIPLDDIEAALELIKSGETRKVDLGQVNG------------RRYFINNAGIGFDAEVVAAVE 151 (301)
T ss_pred CceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCCeEEEeehhcCC------------cceEEEEeecchhHHHHHhhc
Confidence 12999999999999999999995 88989999999999999998874 139999999999999999987
Q ss_pred hhcc--cCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCC
Q 037501 290 KYRW--MGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVD 367 (438)
Q Consensus 290 ~~r~--lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~ 367 (438)
..+| +|.++|.+.++..+.+.++++++|+++...
T Consensus 152 ~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d~~~-------------------------------------------- 187 (301)
T COG1597 152 EERKKGFGRLAYALAGLAVLARLKPFRIEIEYDGKT-------------------------------------------- 187 (301)
T ss_pred HHHHhccchHHHHHHHHHhccccCCCcEEEEEcCcE--------------------------------------------
Confidence 6665 599999999999999999999999997542
Q ss_pred CCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 368 MSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
| +++.+++.++|....++. ..++|.|.++||.||++++++.+++.++
T Consensus 188 ------------------~---~~~~~~~~~~~~~~~gg~--~~~~p~a~~~dG~l~~~i~~~~~~~~~~ 234 (301)
T COG1597 188 ------------------F---EGEALALLVFNGNSYGGG--MKLAPDASLDDGLLDVYILKPQSLLELL 234 (301)
T ss_pred ------------------E---EEEEEEEEEecCcccccc--cccCCcCCCCCceEEEEEEccccHHHHH
Confidence 2 666777777777766664 4589999999999999999998877654
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=6.4e-39 Score=317.99 Aligned_cols=230 Identities=20% Similarity=0.284 Sum_probs=200.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+||++||+||.||++++.+.|+++++.|++.+++++++.|++++|+.++++.+. ..++|.||++|||||||||+|+|
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~~d~ivv~GGDGTl~~v~~~l 77 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEAR---KFGVDTVIAGGGDGTINEVVNAL 77 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHH---hcCCCEEEEECCCChHHHHHHHH
Confidence 378999999999999988999999999999999999999999999988876543 24689999999999999999999
Q ss_pred hhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 037501 132 LSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERF 211 (438)
Q Consensus 132 ~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (438)
.... ..+
T Consensus 78 ~~~~-------------------------------------------------------------------------~~~ 84 (293)
T TIGR00147 78 IQLD-------------------------------------------------------------------------DIP 84 (293)
T ss_pred hcCC-------------------------------------------------------------------------CCC
Confidence 7531 145
Q ss_pred eEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeE-EEEeeeccchhhhhhhh--
Q 037501 212 RFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHY-TASFSGYGFYGDVISES-- 288 (438)
Q Consensus 212 ~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ry-f~~~~~~G~~adV~~~s-- 288 (438)
+||+||+||+|+||++|+.+.|+.+++..+..|+.+++|++++++ +| |+|++|+|++++++...
T Consensus 85 ~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~~~~~Dlg~v~~-------------~~~fln~~g~G~~a~v~~~~~~ 151 (293)
T TIGR00147 85 ALGILPLGTANDFARSLGIPEDLDKAAKLVIAGDARAIDMGQVNK-------------QYCFINMAGGGFGTEITTETPE 151 (293)
T ss_pred cEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCCceEEEEEEECC-------------eEEEEEEEeechhhHhHhhCCH
Confidence 899999999999999999999999999999999999999999975 89 99999999999998764
Q ss_pred hhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCC
Q 037501 289 EKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDM 368 (438)
Q Consensus 289 e~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~ 368 (438)
+.++.+|+++|.+++++.++++++|+++|++++..
T Consensus 152 ~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~d~~~--------------------------------------------- 186 (293)
T TIGR00147 152 KLKAALGSLSYILSGLMRMDTLQPFRCEIRGEGEH--------------------------------------------- 186 (293)
T ss_pred HHHhccchHHHHHHHHHHHhhCCCeeEEEEECCeE---------------------------------------------
Confidence 34456899999999999999999999998874321
Q ss_pred CCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 369 SSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
++.+++++.++|.+++|+. ..++|.|.++||.|||+++++.++++++
T Consensus 187 --------------------~~~~~~~~~v~n~~~~gg~--~~~~p~a~~~DG~l~v~~v~~~~~~~~~ 233 (293)
T TIGR00147 187 --------------------WQGEAVVFLVGNGRQAGGG--QKLAPDASINDGLLDLRIFTNDNLLPAL 233 (293)
T ss_pred --------------------EEeeEEEEEEeCCcccCCC--cccCCccccCCCeeEEEEEcCCCHHHHH
Confidence 2456777888899999975 3488999999999999999999988765
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=318.64 Aligned_cols=226 Identities=17% Similarity=0.221 Sum_probs=189.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..++++||+||.||++++.+.++++++.|++. ++++++.|++.+||.++++++.+ +++|.||++|||||||||+|+
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~---~~~d~Viv~GGDGTl~ev~~~ 316 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTPEISAEALAKQARK---AGADIVIACGGDGTVTEVASE 316 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCCCccHHHHHHHHHh---cCCCEEEEECCCcHHHHHHHH
Confidence 45789999999999999999999999999876 88999999999999999998752 578999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|..+ +
T Consensus 317 l~~~---------------------------------------------------------------------------~ 321 (547)
T PRK12361 317 LVNT---------------------------------------------------------------------------D 321 (547)
T ss_pred HhcC---------------------------------------------------------------------------C
Confidence 9753 4
Q ss_pred ceEEEecCCChhHHHHHc-CCC---CCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhh
Q 037501 211 FRFGIIPAGSTDAIVICT-TGA---RDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVIS 286 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl-~g~---~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~ 286 (438)
++|||||+||+|+||++| +.+ .|+.+++..|..|..+++|++++++ +||+|++|+||+++|..
T Consensus 322 ~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~-------------~~fln~agiG~da~v~~ 388 (547)
T PRK12361 322 ITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGHTQRIDTARCND-------------RLMLLLVGIGFEQKMIE 388 (547)
T ss_pred CCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCCCeEEEEEEEcC-------------eEEEEEEeechhHHHHH
Confidence 689999999999999999 655 4889999999999999999999975 89999999999999988
Q ss_pred hh--hhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCC
Q 037501 287 ES--EKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTN 364 (438)
Q Consensus 287 ~s--e~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~ 364 (438)
+. ++++.+|.++|.+++++.+.++++|+++|++++.+.
T Consensus 389 ~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~dg~~~---------------------------------------- 428 (547)
T PRK12361 389 SADRERKNALGQLAYLDGLWRAVNENETLTLTVTLDDAEP---------------------------------------- 428 (547)
T ss_pred hccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEECCCCc----------------------------------------
Confidence 75 456678999999999999999999999999875421
Q ss_pred CCCCCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCc
Q 037501 365 SVDMSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPR 433 (438)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~ 433 (438)
.+.+..++.++|.+.++.....| .+.+.++||.|||+++++.++
T Consensus 429 ------------------------~~~~~~~l~v~N~~~~~~~~~~G-gg~~~~~DG~Ldv~~v~~~~~ 472 (547)
T PRK12361 429 ------------------------QTISTHSLVVANAAPFTSLLAQG-GGEPNMTDGLLDITWLDSGGE 472 (547)
T ss_pred ------------------------eEEEEEEEEEEcCCCcccccccC-CCCCCCCCceeEEEEEcCCCc
Confidence 13345556678875443211111 134589999999999999874
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.94 E-value=1.4e-26 Score=203.50 Aligned_cols=128 Identities=35% Similarity=0.646 Sum_probs=108.0
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCC-cEEEEEcCCchHHHHHHhhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSY-DGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~-d~IV~vGGDGTv~EVvNGL~ 132 (438)
|++||+||+||++++. |+++++.|+..+.+++++.|++.+++.++++.. ..+.+ |.||++|||||+||++|+|+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~~~~ivv~GGDGTl~~vv~~l~ 75 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEALARIL---ALDDYPDVIVVVGGDGTLNEVVNGLM 75 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHH---HHTTS-SEEEEEESHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHHHHHHH---hhccCccEEEEEcCccHHHHHHHHHh
Confidence 5899999999999987 688999999999999999999999999988733 24566 99999999999999999998
Q ss_pred hcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCce
Q 037501 133 SSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFR 212 (438)
Q Consensus 133 ~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (438)
..... .+++
T Consensus 76 ~~~~~-----------------------------------------------------------------------~~~~ 84 (130)
T PF00781_consen 76 GSDRE-----------------------------------------------------------------------DKPP 84 (130)
T ss_dssp TSTSS-----------------------------------------------------------------------S--E
T ss_pred hcCCC-----------------------------------------------------------------------ccce
Confidence 76310 2579
Q ss_pred EEEecCCChhHHHHHcCCCCCHHH-HHHHHHcCCeEEeeEEEEecc
Q 037501 213 FGIIPAGSTDAIVICTTGARDPVT-SALHIVLGKRVCLDIAQVVRW 257 (438)
Q Consensus 213 lGiIP~GSgN~~A~sl~g~~d~~~-aa~~i~~g~~~~lDv~~v~~~ 257 (438)
||+||+||+|+||++|+.+.++.. +++.++.++.+.+|+++++.|
T Consensus 85 l~iiP~GT~N~~ar~lg~~~~~~~~a~~~~~~~~~~~~d~~~v~~~ 130 (130)
T PF00781_consen 85 LGIIPAGTGNDFARSLGIPSDPEANAALLIILGRVRKIDVGKVNTW 130 (130)
T ss_dssp EEEEE-SSS-HHHHHTT--SSHHH-HHHHHHHSEEEEEEEEEETT-
T ss_pred EEEecCCChhHHHHHcCCCCCcHHHHHHHHHhCCCcEeEEEEeCCC
Confidence 999999999999999999999999 888899999999999999865
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.86 E-value=1.1e-21 Score=171.54 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=82.6
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+||+||+||++++.+++++++..+... .++.|+. ..++.+++++ ...+|.||++|||||+|||+|+|+.
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~----~v~~t~~~~~~~~~~~~~~-----~~~~d~vvv~GGDGTi~~vvn~l~~ 71 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPA----QVFDLTKKGPAAALVIFRD-----LPKFDRVLVCGGDGTVGWVLNALDK 71 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCc----eEEEEecCChHHHHHHHhh-----cCcCCEEEEEccccHHHHHHHHHHh
Confidence 589999999999988888887777543 4555543 4455555443 3468999999999999999999986
Q ss_pred cccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCceE
Q 037501 134 SRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFRF 213 (438)
Q Consensus 134 ~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 213 (438)
++.+ ...+||
T Consensus 72 ~~~~----------------------------------------------------------------------~~~~pl 81 (124)
T smart00046 72 RELP----------------------------------------------------------------------LPEPPV 81 (124)
T ss_pred cccc----------------------------------------------------------------------cCCCcE
Confidence 5310 013799
Q ss_pred EEecCCChhHHHHHcCCCCCHHHHHHHHH
Q 037501 214 GIIPAGSTDAIVICTTGARDPVTSALHIV 242 (438)
Q Consensus 214 GiIP~GSgN~~A~sl~g~~d~~~aa~~i~ 242 (438)
|+||+||+|+||++|+.+.++.++.....
T Consensus 82 giiP~GTgNdfar~lgi~~~~~~~~~~~~ 110 (124)
T smart00046 82 AVLPLGTGNDLARSLGWGGGYDGEKLLKT 110 (124)
T ss_pred EEeCCCChhHHHHHcCCCCCcccccHHHH
Confidence 99999999999999999988877655443
No 18
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-20 Score=186.33 Aligned_cols=185 Identities=20% Similarity=0.399 Sum_probs=143.6
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
.||||++|++||.+.|+..+..+++ ..|+|+.||++++++.|.+.+||+.+++.+. ...|.|+++|||||+.|||
T Consensus 58 ~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~----t~~Dii~VaGGDGT~~eVV 133 (535)
T KOG4435|consen 58 TRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVD----TQEDIIYVAGGDGTIGEVV 133 (535)
T ss_pred cccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhc----cCCCeEEEecCCCcHHHhh
Confidence 4779999999999999888888875 9999999999999999999999999998763 3449999999999999999
Q ss_pred HhhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCC
Q 037501 129 NGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPS 208 (438)
Q Consensus 129 NGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (438)
.|++.++.
T Consensus 134 TGi~Rrr~------------------------------------------------------------------------ 141 (535)
T KOG4435|consen 134 TGIFRRRK------------------------------------------------------------------------ 141 (535)
T ss_pred HHHHhccc------------------------------------------------------------------------
Confidence 99998852
Q ss_pred CCceEEEecCCChhHHHHH-c----C---CCCCHHHHHHHHHcCCe---EEeeEEEEeccccccccCCCCceeEEEEeee
Q 037501 209 ERFRFGIIPAGSTDAIVIC-T----T---GARDPVTSALHIVLGKR---VCLDIAQVVRWKATATSKVEPLVHYTASFSG 277 (438)
Q Consensus 209 ~~~~lGiIP~GSgN~~A~s-l----~---g~~d~~~aa~~i~~g~~---~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~ 277 (438)
...|||++|.|--|.-..+ + . -.+...+|++.++++++ .++||..-+. .....|.++-++
T Consensus 142 ~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~~gs---------~l~P~fgl~gls 212 (535)
T KOG4435|consen 142 AQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTTEGS---------TLAPEFGLGGLS 212 (535)
T ss_pred ccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEeccCCC---------ccccccccCccc
Confidence 2456666776665543322 1 1 11334578899999988 6677765111 112368889999
Q ss_pred ccchhhhhhhhhhhcccCchHHHHHHHHHHHhCCc--eEEEEEE
Q 037501 278 YGFYGDVISESEKYRWMGPKRYDYAGTKVFLRHRS--YEAEIAY 319 (438)
Q Consensus 278 ~G~~adV~~~se~~r~lG~~rY~~~~~~~l~~~~~--y~~~I~~ 319 (438)
||.+-||.....||.++||++-..+.++.+++.-+ .++.++|
T Consensus 213 wG~frdi~~~~~KyWYfgplk~~aA~f~s~lk~wpak~e~vv~y 256 (535)
T KOG4435|consen 213 WGWFRDIEDTRKKYWYFGPLKRRAAYFWSMLKRWPAKIECVVEY 256 (535)
T ss_pred hhhhhhhhhhhhheeeecHHHHHHHHHHHHHhcCCCceeEEecc
Confidence 99999999999999999999877788888886533 3444444
No 19
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.65 E-value=3.3e-15 Score=158.70 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=125.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.-..++|||||+||.+.|..+.++.+.+|....+ +++-.+..+.-+..+.+.+ .+..|+|+|||||+-.|++.
T Consensus 270 ~~~PLlVfvNpKSGg~~G~~ll~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~------~~~riLVcGGDGTvGWVL~~ 342 (634)
T KOG1169|consen 270 DWRPLLVFVNPKSGGQQGERLLRRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDV------PDFRILVCGGDGTVGWVLGC 342 (634)
T ss_pred CCcceEEEEecCCcccccHHHHHHHHHhcChhhE-EecccCCCCchhHHHHHhC------CcceEEEecCCCcchhhhhh
Confidence 3357999999999999999988888888864432 2222222245555666543 23489999999999999988
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
+-....+ .. ...
T Consensus 343 i~~~n~~---------------------------------------------~~-----------------------~~~ 354 (634)
T KOG1169|consen 343 IDKLNKQ---------------------------------------------NA-----------------------IPP 354 (634)
T ss_pred HHHhhcc---------------------------------------------cc-----------------------CCC
Confidence 8553210 00 036
Q ss_pred ceEEEecCCChhHHHHHcCC----CC---CHHHHHHHHHcCCeEEeeEEEEeccccccc----------cCCCCceeEEE
Q 037501 211 FRFGIIPAGSTDAIVICTTG----AR---DPVTSALHIVLGKRVCLDIAQVVRWKATAT----------SKVEPLVHYTA 273 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g----~~---d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~----------~~~~~~~ryf~ 273 (438)
+|+||+|.|||||++|.|+. +. ++.+.+..|....+..+|=..|.....+.. ........+|-
T Consensus 355 PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~~~~~~~imn 434 (634)
T KOG1169|consen 355 PPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKGDPVPYGIMN 434 (634)
T ss_pred CCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCCcCCCCCeeeEe
Confidence 79999999999999999952 22 277778888899999999988864221100 01112235677
Q ss_pred Eeeeccchhhhhhhhhhh----------cccCchHHHHHHHHHH
Q 037501 274 SFSGYGFYGDVISESEKY----------RWMGPKRYDYAGTKVF 307 (438)
Q Consensus 274 ~~~~~G~~adV~~~se~~----------r~lG~~rY~~~~~~~l 307 (438)
|.+|+|+||.|..+.... |.+.++.|.-.|.+..
T Consensus 435 NYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~ 478 (634)
T KOG1169|consen 435 NYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQET 478 (634)
T ss_pred eeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhh
Confidence 899999999999986222 3356777877774443
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.65 E-value=1.6e-15 Score=156.64 Aligned_cols=180 Identities=20% Similarity=0.209 Sum_probs=119.4
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
..+|.+||||||+||..++.++.....=+|.-..+ +++ ....+..|.|+-+... .-.|+++||||||..|+.
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQV-FDl-sq~GPK~aLEmyRKV~------nLRILaCGGDGTVGWiLS 434 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQV-FDL-SQLGPKFALEMYRKVV------NLRILACGGDGTVGWILS 434 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHHHHHHHhcChhhh-eeh-hccCcHHHHHHHHhcc------ceEEEEecCCCceeehhh
Confidence 45688999999999999998776655444432211 121 2336777888777653 247999999999999998
Q ss_pred hhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCC
Q 037501 130 GFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSE 209 (438)
Q Consensus 130 GL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (438)
-|-..+. .+
T Consensus 435 tLD~L~l-----------------------------------------------------------------------~p 443 (1004)
T KOG0782|consen 435 TLDNLNL-----------------------------------------------------------------------PP 443 (1004)
T ss_pred hhhhcCC-----------------------------------------------------------------------CC
Confidence 7754321 14
Q ss_pred CceEEEecCCChhHHHHHcCC----CCCHHH-HHHHHHcCCeEEeeEEEEecccccc----ccCCC----CceeEEEEee
Q 037501 210 RFRFGIIPAGSTDAIVICTTG----ARDPVT-SALHIVLGKRVCLDIAQVVRWKATA----TSKVE----PLVHYTASFS 276 (438)
Q Consensus 210 ~~~lGiIP~GSgN~~A~sl~g----~~d~~~-aa~~i~~g~~~~lDv~~v~~~~~~~----~~~~~----~~~ryf~~~~ 276 (438)
.+|+||+|.|||||+|++|+. +..|+. .+.++..|....+|-..+.-..+.. ..+.. .-...|-|.+
T Consensus 444 ~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~LPL~VfnNYF 523 (1004)
T KOG0782|consen 444 YPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSALPLTVFNNYF 523 (1004)
T ss_pred CCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhccchhHhhccc
Confidence 679999999999999999952 344554 4456778999999999886432211 00001 1123577889
Q ss_pred eccchhhhhhhhhhh----------cccCchHHHHHHHHHHH
Q 037501 277 GYGFYGDVISESEKY----------RWMGPKRYDYAGTKVFL 308 (438)
Q Consensus 277 ~~G~~adV~~~se~~----------r~lG~~rY~~~~~~~l~ 308 (438)
++||+|.|.-+.... |+..++.|.=.++.-|+
T Consensus 524 SlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl 565 (1004)
T KOG0782|consen 524 SLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFL 565 (1004)
T ss_pred cccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHH
Confidence 999999998764222 33344555544555554
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.92 E-value=8.5e-10 Score=100.55 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=75.7
Q ss_pred EEEeeeccchhhhhhhhh--h--------hcccCchHHHHHHHHHHHh--CC--ceEEEEEEeccccccccccCCCCCcc
Q 037501 272 TASFSGYGFYGDVISESE--K--------YRWMGPKRYDYAGTKVFLR--HR--SYEAEIAYLEVDAEHTNSVSNKGYSC 337 (438)
Q Consensus 272 f~~~~~~G~~adV~~~se--~--------~r~lG~~rY~~~~~~~l~~--~~--~y~~~I~~~~~~~~~~~~~~~~~~~~ 337 (438)
|+|++|+||+|+|.++.+ + ++++|+++|.+.+++.+++ ++ +++++|++++.+..
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~dg~~~~------------ 69 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELECDGVDVD------------ 69 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEECCEecc------------
Confidence 678999999999998653 2 2467999999999999975 33 25677777543210
Q ss_pred cccccccCCCccccceecccccccCCCCCCCCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcC----
Q 037501 338 SRAQTFRNSNKCERVICRRNCNICNTNSVDMSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLV---- 413 (438)
Q Consensus 338 ~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~---- 413 (438)
......++.++|.+++|+..+ ++
T Consensus 70 ---------------------------------------------------~~~~~~~v~v~N~~~~ggG~~--i~p~~~ 96 (160)
T smart00045 70 ---------------------------------------------------LPNSLEGIAVLNIPSYGGGTN--LWGTTD 96 (160)
T ss_pred ---------------------------------------------------CCCCccEEEEECCCccccCcc--cccCCc
Confidence 011345688999999987643 78
Q ss_pred ------ccCccCCCeEEEEEEcCCCccccC
Q 037501 414 ------VDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 414 ------P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
|.|+++||.||++++++.+++..+
T Consensus 97 ~~~~~~p~a~~~DG~ldv~~~~~~~~~~~~ 126 (160)
T smart00045 97 KEDLNFSKQSHDDGLLEVVGLTGAMHMAQI 126 (160)
T ss_pred ccccccCCCCCCCceEEEEEEcCchhhhhh
Confidence 889999999999999998877543
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.84 E-value=1.1e-08 Score=101.45 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=81.5
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHHH-HhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVMA-STKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~~-~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
|+.|++|+ |+..+.+.++++...|+..++++.+. .++..+++...+. .+ ...++|.||++|||||+.++++
T Consensus 2 ~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~---~~~~~d~vi~iGGDGTlL~a~~- 75 (277)
T PRK03708 2 RFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPL---EEMDVDFIIAIGGDGTILRIEH- 75 (277)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccc---cccCCCEEEEEeCcHHHHHHHH-
Confidence 57888887 55677888999999999999988775 2333333322221 11 1246899999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
+... .
T Consensus 76 ~~~~---------------------------------------------------------------------------~ 80 (277)
T PRK03708 76 KTKK---------------------------------------------------------------------------D 80 (277)
T ss_pred hcCC---------------------------------------------------------------------------C
Confidence 6532 4
Q ss_pred ceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeE
Q 037501 211 FRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRV 247 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~ 247 (438)
+||..||.|+. +|...+. +.+...+...+..|+..
T Consensus 81 ~pi~gIn~G~l-GFl~~~~-~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 81 IPILGINMGTL-GFLTEVE-PEETFFALSRLLEGDYF 115 (277)
T ss_pred CeEEEEeCCCC-CccccCC-HHHHHHHHHHHHcCCce
Confidence 68899999998 7877765 56777888888888643
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.76 E-value=3.3e-08 Score=99.39 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
+.|++++|+|| |+..+.+..+++...|++.|+++.+..++...++.+.... .....+|.||++|||||++++++.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~---~~~~~~d~vi~~GGDGT~l~~~~~ 76 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLA---SASELIDLAIVLGGDGTVLAAARH 76 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhh---ccccCcCEEEEECCcHHHHHHHHH
Confidence 46789999999 6677778888999999999998877766544332221111 112468999999999999999999
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 77 ~~~ 79 (305)
T PRK02645 77 LAP 79 (305)
T ss_pred hcc
Confidence 853
No 24
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=80.77 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=28.0
Q ss_pred CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 94 AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 94 ~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+.+....++.+. ..+.|.|+.+|||||...|++++
T Consensus 86 a~DT~~~~r~~~---~~gVdlIvfaGGDGTarDVa~av 120 (355)
T COG3199 86 AEDTINAVRRMV---ERGVDLIVFAGGDGTARDVAEAV 120 (355)
T ss_pred HHHHHHHHHHHH---hcCceEEEEeCCCccHHHHHhhc
Confidence 445556666664 35899999999999999999988
No 25
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.99 E-value=2.3e-05 Score=78.45 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=50.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHH----HHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDV----MASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~----~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+++.+|.||. +..+.++.+++...|++.|+++.+.... .+.... ..... ......|.||++|||||+..
T Consensus 4 ~~~~i~iv~~~~--~~~~~~~~~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~-~~~~~~d~vi~lGGDGT~L~ 78 (292)
T PRK03378 4 HFKCIGIVGHPR--HPTALTTHEMLYHWLTSKGYEVIVEQQI--AHELQLKNVKTGTLA-EIGQQADLAIVVGGDGNMLG 78 (292)
T ss_pred cCCEEEEEEeCC--CHHHHHHHHHHHHHHHHCCCEEEEecch--hhhcCcccccccchh-hcCCCCCEEEEECCcHHHHH
Confidence 357899999984 4566777788999999998876543211 110000 00000 01235899999999999999
Q ss_pred HHHhhhh
Q 037501 127 ILNGFLS 133 (438)
Q Consensus 127 VvNGL~~ 133 (438)
+++.+..
T Consensus 79 aa~~~~~ 85 (292)
T PRK03378 79 AARVLAR 85 (292)
T ss_pred HHHHhcC
Confidence 9987743
No 26
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.93 E-value=5e-05 Score=76.15 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=53.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
.+++.||+||.. ..+.++++++...|++.++++.+..++. ..++...... .. ....+|.||++|||||+.+++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~-~~-~~~~~d~vi~~GGDGt~l~~~ 79 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSR-KL-LGEVCDLVIVVGGDGSLLGAA 79 (295)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccch-hh-cccCCCEEEEEeCcHHHHHHH
Confidence 467999999755 5677888899999999998887665432 1221111110 00 123689999999999999999
Q ss_pred Hhhh
Q 037501 129 NGFL 132 (438)
Q Consensus 129 NGL~ 132 (438)
+.+.
T Consensus 80 ~~~~ 83 (295)
T PRK01231 80 RALA 83 (295)
T ss_pred HHhc
Confidence 8774
No 27
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.62 E-value=2.8e-05 Score=84.71 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
..++||+|-++|..++.++.++...+|.-..+ ++++-+ .+ +++-.+.. ..+. -.|+|+||||++..|+..+.
T Consensus 195 spllv~insksgd~qg~~~lrkfkq~lnp~qV-fdll~~-gp----~~gL~~f~-~~d~-friLvcggdGsv~wvls~~d 266 (1099)
T KOG1170|consen 195 SPLLVFINSKSGDSQGQRFLRKFKQILNPIQV-FDLIAG-GP----DFGLTFFS-HFES-FRILVCGGDGSVGWVLSAID 266 (1099)
T ss_pred CceeEeecccCCCchhHHHHHhhhhhcCHHHH-HHHHcc-Cc----chhhhhhh-cccc-eEEEEecCCCCCcchHHHHH
Confidence 57999999999999998887777666654332 111111 11 22222110 1122 26999999999999998765
Q ss_pred h
Q 037501 133 S 133 (438)
Q Consensus 133 ~ 133 (438)
.
T Consensus 267 s 267 (1099)
T KOG1170|consen 267 R 267 (1099)
T ss_pred h
Confidence 4
No 28
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.43 E-value=0.00062 Score=68.20 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHH---HH-HHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFD---VM-ASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~---~~-~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+++.+|.|+.. ..+.+..+++...|+..++++.+..++.. .++.+ .. +++ ...+|.||++|||||+.+
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~----~~~~d~vi~~GGDGt~l~ 78 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI----GARADLAVVLGGDGTMLG 78 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh----ccCCCEEEEECCcHHHHH
Confidence 567999988744 56677788899999999887655433211 01101 00 111 136899999999999999
Q ss_pred HHHhhhh
Q 037501 127 ILNGFLS 133 (438)
Q Consensus 127 VvNGL~~ 133 (438)
+++.+..
T Consensus 79 ~~~~~~~ 85 (291)
T PRK02155 79 IGRQLAP 85 (291)
T ss_pred HHHHhcC
Confidence 9998754
No 29
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.38 E-value=0.00058 Score=68.85 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHH-HHHH---------HhhhhhcCCCcEEEEEc
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAF-DVMA---------STKNKELSSYDGVLAVG 119 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~-~~~~---------~~~~~~~~~~d~IV~vG 119 (438)
.++|++.+|.|| ++..+.++.+++...|+..|+++.+.......-.. .... ...+...+..|.||++|
T Consensus 3 ~~~~~I~iv~~~--~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHT--GRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEc
Confidence 478899999997 44566777888999999999877654322110000 0000 00000123579999999
Q ss_pred CCchHHHHHHhhh
Q 037501 120 GDGFFNEILNGFL 132 (438)
Q Consensus 120 GDGTv~EVvNGL~ 132 (438)
||||+-.++.-+.
T Consensus 81 GDGT~L~aar~~~ 93 (306)
T PRK03372 81 GDGTILRAAELAR 93 (306)
T ss_pred CCHHHHHHHHHhc
Confidence 9999988887654
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.30 E-value=0.00014 Score=72.55 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEe--CCCCh--------------------HHHHHHHhhhhhcC
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVT--QRAGQ--------------------AFDVMASTKNKELS 110 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T--~~~~h--------------------a~~~~~~~~~~~~~ 110 (438)
|+.||.||. +..+.+..+++..+|.+. ++.+-+... +.... ......+ ...+
T Consensus 1 kVgii~np~--~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 75 (285)
T PF01513_consen 1 KVGIIANPN--KPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEE---MLEE 75 (285)
T ss_dssp -EEEEESSC--GHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHH---HHCC
T ss_pred CEEEEEcCC--CHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhh---hccc
Confidence 578999998 445667788898988888 554433211 00000 0000111 1246
Q ss_pred CCcEEEEEcCCchHHHHHHhhhh
Q 037501 111 SYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 111 ~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++|.||++|||||+-.++..+..
T Consensus 76 ~~D~ii~lGGDGT~L~~~~~~~~ 98 (285)
T PF01513_consen 76 GVDLIIVLGGDGTFLRAARLFGD 98 (285)
T ss_dssp CSSEEEEEESHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCHHHHHHHHHhcc
Confidence 89999999999999999987643
No 31
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=97.13 E-value=0.0013 Score=60.00 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=31.8
Q ss_pred EEEeeeccchhhhhhhhhh----h------cccCchHHHHHHHHHHHh
Q 037501 272 TASFSGYGFYGDVISESEK----Y------RWMGPKRYDYAGTKVFLR 309 (438)
Q Consensus 272 f~~~~~~G~~adV~~~se~----~------r~lG~~rY~~~~~~~l~~ 309 (438)
|.|.+|+|+||.|..+.++ . |+++++.|...+++.++.
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~ 49 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQ 49 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHh
Confidence 6788999999999998643 3 457889999999999984
No 32
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.95 E-value=0.0051 Score=67.21 Aligned_cols=95 Identities=7% Similarity=-0.031 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHH---H-h
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMA---S-T 104 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~---~-~ 104 (438)
.+++..+..++.|.+. ...+|+++.||.||. +..+.++.+++...|.+.++++.+.... +..+.. . .
T Consensus 270 a~~~l~~~l~~~l~~~---w~~~~~~i~iv~~~~--~~~~~~~~~~i~~~l~~~~~~v~~~~~~----~~~~~~~~~~~~ 340 (569)
T PRK14076 270 SNEILHKKLVGIFGNK---WRIKPTKFGIVSRID--NEEAINLALKIIKYLDSKGIPYELESFL----YNKLKNRLNEEC 340 (569)
T ss_pred ECHHHHHHHHHhhhhh---cccCCcEEEEEcCCC--CHHHHHHHHHHHHHHHHCCCEEEEechh----hhhhcccccccc
Confidence 4566666666655443 346899999999984 4566777788999998888876553211 111100 0 0
Q ss_pred h-hhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 105 K-NKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 105 ~-~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
. ..+....|.||++|||||+=.++.-+.
T Consensus 341 ~~~~~~~~~dlvi~lGGDGT~L~aa~~~~ 369 (569)
T PRK14076 341 NLIDDIEEISHIISIGGDGTVLRASKLVN 369 (569)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHhc
Confidence 0 012335799999999999988876553
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.79 E-value=0.0077 Score=60.55 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHH-----HHH-Hhhhhhc-CCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFD-----VMA-STKNKEL-SSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~-----~~~-~~~~~~~-~~~d~IV~vGGDGT 123 (438)
++++.||.||.. ..+.+..+++...|++.|+++.+.......+ +.. ... .. .++ ...|.||++|||||
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~vi~lGGDGT 80 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNK--TELGQYCDLVAVLGGDGT 80 (296)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccch--hhcCcCCCEEEEECCcHH
Confidence 578999999844 5677788889999999998776543111100 000 000 00 012 35799999999999
Q ss_pred HHHHHHhhhh
Q 037501 124 FNEILNGFLS 133 (438)
Q Consensus 124 v~EVvNGL~~ 133 (438)
+=.++.-+..
T Consensus 81 ~L~aa~~~~~ 90 (296)
T PRK04539 81 FLSVAREIAP 90 (296)
T ss_pred HHHHHHHhcc
Confidence 9888876543
No 34
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.74 E-value=0.005 Score=62.11 Aligned_cols=75 Identities=21% Similarity=0.109 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC--ChHH--------H----HHHHhhhhhcCCCcEEEE
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA--GQAF--------D----VMASTKNKELSSYDGVLA 117 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~--~ha~--------~----~~~~~~~~~~~~~d~IV~ 117 (438)
++++.||.|| ++..+.++.+++...|++.|+++.+...... ++.. + -...+ ....|.||+
T Consensus 1 m~~igiv~n~--~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYND--GKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGF----DSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhc----ccCcCEEEE
Confidence 3678999997 4456777888899999999987755321100 0000 0 00111 135799999
Q ss_pred EcCCchHHHHHHhhh
Q 037501 118 VGGDGFFNEILNGFL 132 (438)
Q Consensus 118 vGGDGTv~EVvNGL~ 132 (438)
+|||||+=.++.-+.
T Consensus 75 iGGDGTlL~aar~~~ 89 (305)
T PRK02649 75 LGGDGTVLSAARQLA 89 (305)
T ss_pred EeCcHHHHHHHHHhc
Confidence 999999988887654
No 35
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.70 E-value=0.005 Score=61.63 Aligned_cols=74 Identities=16% Similarity=0.088 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHH---HHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVM---ASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~---~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.++++.||.||. + .+.++.+++...|++.++++.+.... +..+. ....+ .....|.||++|||||+=.+
T Consensus 9 ~~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~~~----~~~~~~~~~~~~~-~~~~~Dlvi~iGGDGT~L~a 80 (287)
T PRK14077 9 NIKKIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEKES----AEILDLPGYGLDE-LFKISDFLISLGGDGTLISL 80 (287)
T ss_pred cCCEEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEecch----hhhhcccccchhh-cccCCCEEEEECCCHHHHHH
Confidence 467899999995 4 77788889999999888876554321 11110 00000 11358999999999999877
Q ss_pred HHhhh
Q 037501 128 LNGFL 132 (438)
Q Consensus 128 vNGL~ 132 (438)
+.-+.
T Consensus 81 a~~~~ 85 (287)
T PRK14077 81 CRKAA 85 (287)
T ss_pred HHHhc
Confidence 76654
No 36
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.44 E-value=0.011 Score=58.48 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=44.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+++.+|.|+.. .+.++.+++...|++.|+++.+. ....|.||++|||||+=.++.-+.
T Consensus 3 ~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~~~~~~-------------------~~~~D~vi~lGGDGT~L~a~~~~~ 60 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKVKPLKKIAEEYGFTVVDH-------------------PKNANIIVSIGGDGTFLQAVRKTG 60 (264)
T ss_pred cEEEEEECCCH---HHHHHHHHHHHHHHHCCCEEEcC-------------------CCCccEEEEECCcHHHHHHHHHhc
Confidence 36888888665 66778888999999998865421 124699999999999988876653
No 37
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.40 E-value=0.017 Score=57.91 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=47.3
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHH---------HHh-hhhhc-CCCcEEEEEcCCc
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVM---------AST-KNKEL-SSYDGVLAVGGDG 122 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~---------~~~-~~~~~-~~~d~IV~vGGDG 122 (438)
++.||+|| ++..+.++.+++...|++.|+++.+.... +..+. ... ...++ +..|.||++||||
T Consensus 2 ~igii~~~--~~~~~~~~~~~i~~~l~~~g~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 75 (292)
T PRK01911 2 KIAIFGQT--YQESASPYIQELFDELEERGAEVLIEEKF----LDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG 75 (292)
T ss_pred EEEEEeCC--CCHHHHHHHHHHHHHHHHCCCEEEEecch----hhhhccccccccccccccchhhcccCCCEEEEECCcH
Confidence 57888887 44566777888999999999877553211 11100 000 00012 3589999999999
Q ss_pred hHHHHHHhhh
Q 037501 123 FFNEILNGFL 132 (438)
Q Consensus 123 Tv~EVvNGL~ 132 (438)
|+=.++.-+.
T Consensus 76 T~L~aa~~~~ 85 (292)
T PRK01911 76 TFLRTATYVG 85 (292)
T ss_pred HHHHHHHHhc
Confidence 9988877664
No 38
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.24 E-value=0.015 Score=61.97 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=58.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHH-hcceeEEEEEeCCCChHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFV-RAKVNTKVIVTQRAGQAFDV 100 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~-~agi~~~v~~T~~~~ha~~~ 100 (438)
-.++|++.+...+..=-+. -.+. ....|++++||.||.. ..+..+..++...|+ ..|+++.+.... +.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~l~-w~~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~ve~~~----a~~l 237 (508)
T PLN02935 167 DIVSFERGNITTAERSSKQ--ISLK-WESDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIYVEPRV----KKEL 237 (508)
T ss_pred ceeeeecCceeeccCCCce--EEee-ecCCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEEEechh----hhhh
Confidence 3567887665443321000 0111 1246999999999844 566677778888887 467765443211 1110
Q ss_pred H---------------HHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 101 M---------------ASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 101 ~---------------~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
. ..+.. -...+|.||++|||||+=.++.-+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIsiGGDGTlL~Aar~~~ 283 (508)
T PLN02935 238 LSESSYFNFVQTWEDEKEILL-LHTKVDLVITLGGDGTVLWAASMFK 283 (508)
T ss_pred ccccccccccccccccchhhh-cccCCCEEEEECCcHHHHHHHHHhc
Confidence 0 01000 0135899999999999988876654
No 39
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.87 E-value=0.043 Score=54.34 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++.+|.| .+.++.++.++++..|+..|+++. .+..|.||++|||||+=.++.-+..
T Consensus 2 ~i~Ii~~---~~~~~~~~~~~l~~~l~~~g~~~~---------------------~~~~Dlvi~iGGDGT~L~a~~~~~~ 57 (265)
T PRK04885 2 KVAIISN---GDPKSKRVASKLKKYLKDFGFILD---------------------EKNPDIVISVGGDGTLLSAFHRYEN 57 (265)
T ss_pred EEEEEeC---CCHHHHHHHHHHHHHHHHcCCccC---------------------CcCCCEEEEECCcHHHHHHHHHhcc
Confidence 4777777 355677788889999988887631 0246999999999999888876643
No 40
>PLN02727 NAD kinase
Probab=95.23 E-value=0.068 Score=60.61 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=49.4
Q ss_pred cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEeCCCChHH-HH-----H-----HHhhhhhcCCCcEEE
Q 037501 49 VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVTQRAGQAF-DV-----M-----ASTKNKELSSYDGVL 116 (438)
Q Consensus 49 ~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T~~~~ha~-~~-----~-----~~~~~~~~~~~d~IV 116 (438)
..+|++++||.+|.. .+.....+|...|... ++++- +.+...+.. .. . ....+ .....|.||
T Consensus 675 ~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~--VE~~~a~~l~~~~~~~~~~~~~~~~~~e-l~~~~DLVI 748 (986)
T PLN02727 675 KSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVL--VEPDVHDIFARIPGFGFVQTFYSQDTSD-LHERVDFVA 748 (986)
T ss_pred CCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEE--EecchHHHhhccccccccceecccchhh-cccCCCEEE
Confidence 358999999999865 4666677788888876 76553 322211111 00 0 00000 113589999
Q ss_pred EEcCCchHHHHHHhhh
Q 037501 117 AVGGDGFFNEILNGFL 132 (438)
Q Consensus 117 ~vGGDGTv~EVvNGL~ 132 (438)
++||||||=.++.-+.
T Consensus 749 vLGGDGTlLrAar~~~ 764 (986)
T PLN02727 749 CLGGDGVILHASNLFR 764 (986)
T ss_pred EECCcHHHHHHHHHhc
Confidence 9999999988887654
No 41
>PLN02929 NADH kinase
Probab=95.20 E-value=0.098 Score=52.71 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 68 GRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 68 ~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+..+.++.+|++.|+++..+. +.+ + ++ .....|.||++|||||+=.++.-+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v~--r~~----~-~~----~~~~~Dlvi~lGGDGT~L~aa~~~ 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECVL--RNE----L-SQ----PIRDVDLVVAVGGDGTLLQASHFL 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEee--ccc----c-cc----ccCCCCEEEEECCcHHHHHHHHHc
Confidence 34556678899999999875442 221 1 11 235689999999999998887766
No 42
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.89 E-value=0.055 Score=53.74 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHH-HhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMA-STKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~-~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
++.+++|| ++..+.++.+++...| ..++++.+ .+.. +..+-. .....+. ..|.||++|||||+=.++.-
T Consensus 2 ~i~iv~~~--~~~~~~~~~~~i~~~l-~~g~~~~~--~~~~--~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a~~~ 71 (271)
T PRK01185 2 KVAFVIRK--DCKRCIKIAKSIIELL-PPDWEIIY--EMEA--AKALGMDGLDIEEI-NADVIITIGGDGTILRTLQR 71 (271)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHH-hcCCEEEE--echh--hhhcCcccCccccc-CCCEEEEEcCcHHHHHHHHH
Confidence 57888887 4456667778888877 45665433 2211 111100 0000112 57999999999999776654
No 43
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=94.69 E-value=0.13 Score=53.42 Aligned_cols=67 Identities=25% Similarity=0.515 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhhc---cCCCcEEEEEEcCCCCCC--ChhhhHHH-HHHHHHhcceeEEEEEeCCCChHHH
Q 037501 33 TCEMWVNRVNAFLNME---VGRPKNLLIFIHPMSGKG--SGRRTWET-VAPIFVRAKVNTKVIVTQRAGQAFD 99 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~---~~rpk~llvivNP~sG~g--~~~~~~~~-v~~~l~~agi~~~v~~T~~~~ha~~ 99 (438)
..+.|++.+.-+..+. ...|||+.||+.|--|.+ .+.+.|++ |+|+|..|+++|+++..++.|+.+.
T Consensus 45 i~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr~ 117 (382)
T PF11711_consen 45 IRQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIRA 117 (382)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHHH
Confidence 4568888887776542 358899999999888876 67788985 9999999999999999999998754
No 44
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.29 E-value=0.12 Score=50.79 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
++.|+.+| .+.+.++++...|.+.|+.+.+. .... . .....|.||++|||||+=.++..+
T Consensus 2 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~--~~~~-------~----~~~~~d~vi~iGGDGT~L~a~~~~ 61 (256)
T PRK14075 2 KLGIFYRE-----EKEKEAKFLKEKISKEHEVVEFC--EASA-------S----GKVTADLIIVVGGDGTVLKAAKKV 61 (256)
T ss_pred EEEEEeCc-----cHHHHHHHHHHHHHHcCCeeEee--cccc-------c----ccCCCCEEEEECCcHHHHHHHHHc
Confidence 45566444 45677888999999888765433 2211 1 124679999999999998888765
No 45
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=93.70 E-value=0.75 Score=47.57 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+|++|+..+..-+ ...+++|...|+.+++++.++. ...+ ....+.++.+. ..+.|.||++|| |++..+
T Consensus 23 ~~r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~---~~~~D~IIaiGG-GS~~D~ 95 (375)
T cd08194 23 GKRPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAK---EGGCDVIIALGG-GSPIDT 95 (375)
T ss_pred CCeEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHH---hcCCCEEEEeCC-chHHHH
Confidence 37888888655431 2357789999999999887652 1121 12333444332 257899999998 666666
Q ss_pred HHhh
Q 037501 128 LNGF 131 (438)
Q Consensus 128 vNGL 131 (438)
.-.+
T Consensus 96 AKai 99 (375)
T cd08194 96 AKAI 99 (375)
T ss_pred HHHH
Confidence 6543
No 46
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.50 E-value=0.24 Score=48.94 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
|+.+|-||.. ++.++.++++..++..++ + .+.+|.||++|||||+=.++.-+.
T Consensus 2 ~~~i~~~~~~---~s~~~~~~l~~~~~~~~~------~-----------------~~~~D~vi~iGGDGT~L~a~~~~~ 54 (259)
T PRK00561 2 KYKIFASTTP---QTEPVLPKLKKVLKKKLA------V-----------------EDGADYLFVLGGDGFFVSTAANYN 54 (259)
T ss_pred EEEEEeCCCH---HHHHHHHHHHHHHhhCCC------c-----------------cCCCCEEEEECCcHHHHHHHHHhc
Confidence 5777777544 455555667776664322 0 145799999999999987776553
No 47
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=93.03 E-value=0.28 Score=48.23 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=48.7
Q ss_pred HHHHHhhhccCCCcEEEEEEcCCCCCCChhhhH-HHHHHHHHhcceeEEEEE--eCCC--ChHHHHHHHhhhhhcCCCcE
Q 037501 40 RVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTW-ETVAPIFVRAKVNTKVIV--TQRA--GQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 40 ~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~-~~v~~~l~~agi~~~v~~--T~~~--~ha~~~~~~~~~~~~~~~d~ 114 (438)
+|.+.+.+. +.++++|+.-+. ..+.. ++|+..|+.+|+++.++. ...+ ....++...+ ...++|.
T Consensus 9 ~l~~~l~~~--~~~~~lvv~d~~-----t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~ 78 (250)
T PF13685_consen 9 KLPEILSEL--GLKKVLVVTDEN-----TYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEAL---RPKDADL 78 (250)
T ss_dssp GHHHHHGGG--T-SEEEEEEETT-----HHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS-----TT--E
T ss_pred HHHHHHHhc--CCCcEEEEEcCC-----HHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHh---cccCCCE
Confidence 445555443 447888887654 23333 579999999999988553 1121 1122222222 1247899
Q ss_pred EEEEcCCchHHHHHHhhhhc
Q 037501 115 VLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 115 IV~vGGDGTv~EVvNGL~~~ 134 (438)
||.+|| ||++.+.--...+
T Consensus 79 ii~vGg-G~i~D~~K~~A~~ 97 (250)
T PF13685_consen 79 IIGVGG-GTIIDIAKYAAFE 97 (250)
T ss_dssp EEEEES-HHHHHHHHHHHHH
T ss_pred EEEeCC-cHHHHHHHHHHHh
Confidence 999998 9999999776554
No 48
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=93.02 E-value=0.17 Score=49.57 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=21.0
Q ss_pred hcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 108 ELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+.+.+|.||++|||||+=.++.-+..
T Consensus 22 ~~~~~Dlvi~iGGDGTlL~a~~~~~~ 47 (246)
T PRK04761 22 PIEEADVIVALGGDGFMLQTLHRYMN 47 (246)
T ss_pred CcccCCEEEEECCCHHHHHHHHHhcC
Confidence 34568999999999999888876543
No 49
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.83 E-value=0.8 Score=46.81 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh-hcCCCcEEEEEcCCchHHHHHHhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK-ELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~-~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+|++||..+.+- ...+++|...|+.+++++.++.--.++--.+.+.++.+. ...++|.||++|| |++..+.-.+
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 788888765442 234778999999999887654321111112222222211 1257899999999 7888877665
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
..
T Consensus 98 a~ 99 (345)
T cd08171 98 AD 99 (345)
T ss_pred HH
Confidence 43
No 50
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=92.79 E-value=1 Score=45.72 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcce-eEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV-NTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi-~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+|++|+..+.. ++++...|+.+++ .+..+.........++.+.+.. ..+.|.||++|| |++..+.-.+
T Consensus 26 ~r~livtd~~~--------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~d~iIaiGG-Gsv~D~aK~v 94 (331)
T cd08174 26 GRVAVVSGPGV--------GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARS--IPNVDAVVGIGG-GKVIDVAKYA 94 (331)
T ss_pred CceEEEECCcH--------HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHh--ccCCCEEEEeCC-cHHHHHHHHH
Confidence 78999987664 6678888887776 4433322223344455544432 126899999998 8888888666
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
..
T Consensus 95 A~ 96 (331)
T cd08174 95 AF 96 (331)
T ss_pred Hh
Confidence 54
No 51
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.52 E-value=0.99 Score=46.16 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-CCC--ChHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-QRA--GQAF 98 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~~~--~ha~ 98 (438)
..+.|+....+.+..+++. . .||++|+.-+.. ....+++|...|+.+++++.+... ..+ .+..
T Consensus 2 ~~i~~G~g~~~~l~~~~~~-------~---~~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~ 67 (351)
T cd08170 2 GRYVQGPGALDELGEYLAR-------L---GKRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGECTRAEIE 67 (351)
T ss_pred CcEEECCCHHHHHHHHHHH-------h---CCeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHH
Confidence 3466777665554443322 1 277888763333 224567899999999988653322 111 2233
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+.++.+. ..+.|.||++|| |++..+.-.+.
T Consensus 68 ~~~~~~~---~~~~D~IIavGG-GS~iD~aK~ia 97 (351)
T cd08170 68 RLAEIAR---DNGADVVIGIGG-GKTLDTAKAVA 97 (351)
T ss_pred HHHHHHh---hcCCCEEEEecC-chhhHHHHHHH
Confidence 3333332 257899999999 66667666553
No 52
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=92.44 E-value=1.2 Score=45.87 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC-----CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ-----RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~-----~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
++++|+..+.- .....++|...|+.+++++.++. .. .-....++++.+.+...++.|.||++|| |++..
T Consensus 24 ~rvlvVtd~~v----~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~D 98 (355)
T cd08197 24 DKYLLVTDSNV----EDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVGN 98 (355)
T ss_pred CeEEEEECccH----HHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 78999988553 12245689999999998765443 21 1123445555554433344459999987 88888
Q ss_pred HHHhhh
Q 037501 127 ILNGFL 132 (438)
Q Consensus 127 VvNGL~ 132 (438)
+.-.+.
T Consensus 99 ~ak~~A 104 (355)
T cd08197 99 IAGLLA 104 (355)
T ss_pred HHHHHH
Confidence 875543
No 53
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.40 E-value=1.4 Score=45.34 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=59.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC-----CCC
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ-----RAG 95 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~-----~~~ 95 (438)
..+.|.....+....++.. . ..++++|+..+... ...+++|...|+.+++++.++. .. .-.
T Consensus 10 ~~v~~G~g~~~~l~~~l~~-------~--~~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~ 76 (358)
T PRK00002 10 YPIIIGKGLLSELGELLAP-------L--KGKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLE 76 (358)
T ss_pred CcEEEeCChHHHHHHHHHh-------c--CCCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHH
Confidence 4466776655544444321 1 24789999876552 2356789999999999887542 21 112
Q ss_pred hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 96 QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 96 ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
...++++.+.+....+.|.||++|| |++..+.-.+.
T Consensus 77 ~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D~aK~iA 112 (358)
T PRK00002 77 TLEKIYDALLEAGLDRSDTLIALGG-GVIGDLAGFAA 112 (358)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcC-cHHHHHHHHHH
Confidence 3344444443222345699999998 78888876554
No 54
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=92.17 E-value=0.18 Score=52.11 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.8
Q ss_pred CCCcEEEEEcCCchHHHHH
Q 037501 110 SSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVv 128 (438)
+.+|.||++||||||=-+.
T Consensus 167 ~~~D~iItLGGDGTvL~aS 185 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYAS 185 (409)
T ss_pred cceeEEEEecCCccEEEeh
Confidence 4689999999999985554
No 55
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=92.02 E-value=1.5 Score=44.84 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeC-----CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQ-----RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~-----~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
.++++|+..+..- ....++|.+.|+.+|+++.++ ... .-....++++.+.+...++.|.||++|| |++.
T Consensus 20 ~~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~ 94 (344)
T TIGR01357 20 PSKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVVG 94 (344)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHHH
Confidence 3789999875542 235678999999999877533 221 1123445555554323345699999998 7777
Q ss_pred HHHHhhh
Q 037501 126 EILNGFL 132 (438)
Q Consensus 126 EVvNGL~ 132 (438)
.+.-.+.
T Consensus 95 D~aK~iA 101 (344)
T TIGR01357 95 DLAGFVA 101 (344)
T ss_pred HHHHHHH
Confidence 7775553
No 56
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=91.62 E-value=1.5 Score=45.22 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=57.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-C--ChHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-A--GQAF 98 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~--~ha~ 98 (438)
..+.|+....+.+..++.. . . +|++||.-+..- ...+++|...|+.+++++.+..... + ....
T Consensus 9 ~~i~~G~g~~~~l~~~l~~--------~-g-~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~ 74 (366)
T PRK09423 9 SKYVQGKGALARLGEYLKP--------L-G-KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEID 74 (366)
T ss_pred ceEEECCCHHHHHHHHHHH--------c-C-CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHH
Confidence 4578887777666655432 1 2 788888754432 2356789999999988764322211 1 1223
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++++.+. ..+.|.||++|| |++..+.-.+..
T Consensus 75 ~~~~~~~---~~~~d~IIavGG-Gsv~D~aK~iA~ 105 (366)
T PRK09423 75 RLVAIAE---ENGCDVVIGIGG-GKTLDTAKAVAD 105 (366)
T ss_pred HHHHHHH---hcCCCEEEEecC-hHHHHHHHHHHH
Confidence 3333332 246899999999 777777766543
No 57
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=91.43 E-value=1.2 Score=44.49 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++.++.+|..- ++....+.+...+...+..+.+. ++-..+.... ....+.+.+.+|.|+++|||||+-.+++-+..
T Consensus 2 ~~~i~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~ 77 (281)
T COG0061 2 KVGIVGRPDKP--EALKIAKRLYEFLKFKGVTVEVD-QELAEELKDF-ADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77 (281)
T ss_pred eEEEEecCCcH--HHHHHHHHHHHHHHhcCceEEEe-chhhhhcccc-cccccccccCceEEEEeCCcHHHHHHHHHhcc
Confidence 45555555443 35555556777777666554332 1211111110 11112233678999999999999999877654
Q ss_pred c
Q 037501 134 S 134 (438)
Q Consensus 134 ~ 134 (438)
.
T Consensus 78 ~ 78 (281)
T COG0061 78 L 78 (281)
T ss_pred C
Confidence 3
No 58
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=91.28 E-value=1.5 Score=44.71 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=55.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-----CCh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-----AGQ 96 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-----~~h 96 (438)
..+.|.....+....++.. .+..++++||..+..-+ ...++|...|+.+++++.++..+. ...
T Consensus 2 ~~i~~G~g~l~~l~~~~~~--------~~~~~kvlivtd~~~~~----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~ 69 (332)
T cd08549 2 KEIVVGEGAINDIGPIINK--------IGVNSKIMIVCGNNTYK----VAGKEIIERLESNNFTKEVLERDSLLIPDEYE 69 (332)
T ss_pred cEEEECCChHHHHHHHHHH--------cCCCCcEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHH
Confidence 3456665555444333221 11236888888755522 223679999999998777643222 122
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
..++++.+. .+.|.||++|| |++..+.-.+.
T Consensus 70 v~~~~~~~~----~~~d~IIaiGG-Gsv~D~aK~iA 100 (332)
T cd08549 70 LGEVLIKLD----KDTEFLLGIGS-GTIIDLVKFVS 100 (332)
T ss_pred HHHHHHHhh----cCCCEEEEECC-cHHHHHHHHHH
Confidence 334444432 27899999999 78888776554
No 59
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=91.06 E-value=1.4 Score=45.10 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=46.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
++.+|+..+.+-+ ..+++|...|+.+++.+++.+ ... .....+.++.+. ..++|.||++|| |++..+.-
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~---~~~~d~IIavGG-Gs~~D~aK 94 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAE---EQEADVIIGVGG-GKTLDTAK 94 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHH---hcCCCEEEEecC-cHHHHHHH
Confidence 6788887655532 446789999999887654432 211 122333444332 247899999998 78888877
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.+..
T Consensus 95 ~ia~ 98 (349)
T cd08550 95 AVAD 98 (349)
T ss_pred HHHH
Confidence 6644
No 60
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=90.52 E-value=2.8 Score=42.29 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=56.3
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC----CChHH
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR----AGQAF 98 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~----~~ha~ 98 (438)
.+.|+....+.+..++.. ...++++|+..+..-+ ..+++|...|+++ +++.++.-.. ..+..
T Consensus 3 ~i~~G~g~l~~l~~~~~~---------~g~~~~liv~~~~~~~----~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~ 68 (332)
T cd07766 3 RIVFGEGAIEKIGEEIKR---------GGFDRALVVSDEGVVK----GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVK 68 (332)
T ss_pred eEEECcCHHHHHHHHHHh---------cCCCeEEEEeCCchhh----hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHH
Confidence 466666655544443321 1347899998655533 4567889999887 7776553111 22344
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++++.+.+ .+.|.||++|| |++..+.-.+..
T Consensus 69 ~~~~~~~~---~~~d~IIaiGG-Gs~~D~aK~ia~ 99 (332)
T cd07766 69 EAVERARA---AEVDAVIAVGG-GSTLDTAKAVAA 99 (332)
T ss_pred HHHHHHHh---cCcCEEEEeCC-chHHHHHHHHHH
Confidence 44444432 57899999997 788887766543
No 61
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=89.85 E-value=1.9 Score=44.11 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=46.1
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+|++|+..+.. ....++++...|+..++.+.++.- .......++++.+. ..++|.||++|| |++..+.-.+
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~---~~~~D~iIavGG-Gs~~D~aK~i 95 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAK---ENGADVIIGIGG-GKVLDTAKAV 95 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHH---hcCCCEEEEeCC-cHHHHHHHHH
Confidence 78999988766 234566788888766665543321 12223334444332 247899999998 7888877666
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
..
T Consensus 96 a~ 97 (347)
T cd08172 96 AD 97 (347)
T ss_pred HH
Confidence 44
No 62
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=89.48 E-value=0.61 Score=47.13 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=34.4
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+.+...|.++||+.+++.-. ++.+ ++.-.|.||-||||||+--...-+..
T Consensus 78 ~~~~~~l~k~giesklv~R~------~lsq-----~i~waD~VisvGGDGTfL~Aasrv~~ 127 (395)
T KOG4180|consen 78 KFCQEELSKAGIESKLVSRN------DLSQ-----PIRWADMVISVGGDGTFLLAASRVID 127 (395)
T ss_pred HHHHHHHhhCCcceeeeehh------hccC-----cCchhhEEEEecCccceeehhhhhhc
Confidence 46889999999997655321 1222 24567999999999998655544443
No 63
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.46 E-value=0.77 Score=45.68 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=32.7
Q ss_pred HHHHHHHHhcceeEEEEEeCC--CChHH----HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQR--AGQAF----DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~--~~ha~----~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
.++...|++.|+++.+...+. .++.. .. .++ ...+|.||++|||||+=.++.-+.
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~----~~~~d~vi~iGGDGT~L~aa~~~~ 63 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEI----GQRAQLAIVIGGDGNMLGRARVLA 63 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHh----CcCCCEEEEECCcHHHHHHHHHhc
Confidence 456777888887765432111 01100 00 111 135899999999999988776553
No 64
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=89.35 E-value=3.6 Score=42.00 Aligned_cols=72 Identities=24% Similarity=0.213 Sum_probs=45.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC------ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA------GQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~------~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
||++|+.-+.. .....++|...|+.+++++.++.-... ....++++.+. ++.|.||++|| |.+-.
T Consensus 24 ~~~livtd~~~----~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~----~~~d~IIaIGG-Gs~~D 94 (348)
T cd08175 24 KKALIVADENT----YAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELE----RDTDLIIAVGS-GTIND 94 (348)
T ss_pred CcEEEEECCcH----HHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhh----ccCCEEEEECC-cHHHH
Confidence 67888875433 222346799999999998765432211 12233333331 27899999999 77777
Q ss_pred HHHhhhh
Q 037501 127 ILNGFLS 133 (438)
Q Consensus 127 VvNGL~~ 133 (438)
+.-.+..
T Consensus 95 ~aK~vA~ 101 (348)
T cd08175 95 ITKYVSY 101 (348)
T ss_pred HHHHHHH
Confidence 7766643
No 65
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=88.76 E-value=2.5 Score=43.00 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
++++|+..+...+ ..+++|...|+.++ .+.+++...+ ....++++.+. ..+.|.||++|| |++..+.-.
T Consensus 26 ~~~liv~d~~~~~----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~~~~d~iIaiGG-Gs~~D~aK~ 96 (339)
T cd08173 26 GRVLVVTGPTTKS----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSAR---DIGADFVIGVGG-GRVIDVAKV 96 (339)
T ss_pred CeEEEEECCchHH----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhh---hcCCCEEEEeCC-chHHHHHHH
Confidence 6888988765532 35668999999888 7766544332 12233333332 247899999998 888888876
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 97 ~a~ 99 (339)
T cd08173 97 AAY 99 (339)
T ss_pred HHH
Confidence 653
No 66
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=88.73 E-value=3 Score=42.73 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHh-cceeEEEEE-eC---CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVR-AKVNTKVIV-TQ---RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~-agi~~~v~~-T~---~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.++++|+..+.--+ ...++|...|+. .++++.++. .+ .-..+.++++.+.+...++.|.||++|| |++..
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~D 97 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATGD 97 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHHH
Confidence 47888888754422 345678899987 676665442 11 1223444444444323456899999997 77777
Q ss_pred HHHhhh
Q 037501 127 ILNGFL 132 (438)
Q Consensus 127 VvNGL~ 132 (438)
+.-.+.
T Consensus 98 ~ak~vA 103 (344)
T cd08169 98 VAGFVA 103 (344)
T ss_pred HHHHHH
Confidence 765543
No 67
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=87.84 E-value=2.4 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=44.9
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-C--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-A--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+|++|+..+... .+++|...|+.+++++.++.... + ....+.++.+. ..++|.||++|| |++..+.-
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~---~~~~D~IIaiGG-GS~~D~aK 92 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEAR---NAGCDVVIAIGG-GSVIDAGK 92 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHH---hcCCCEEEEecC-chHHHHHH
Confidence 788888876553 57789999999999887664222 1 12223333332 257899999999 66666554
Q ss_pred hh
Q 037501 130 GF 131 (438)
Q Consensus 130 GL 131 (438)
.+
T Consensus 93 ~i 94 (374)
T cd08183 93 AI 94 (374)
T ss_pred HH
Confidence 43
No 68
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=87.72 E-value=3.6 Score=43.24 Aligned_cols=87 Identities=13% Similarity=0.272 Sum_probs=51.9
Q ss_pred HHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh---------hc
Q 037501 39 NRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK---------EL 109 (438)
Q Consensus 39 ~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~---------~~ 109 (438)
+.|+..|-.+..-|. -+++||+.-=.|+. +..+|..... -++.|-...+.+.+...+... ..
T Consensus 3 dQL~~il~sd~~lPe-~i~Lvn~sd~qgq~------l~~~l~~~~~--pvv~t~s~advqa~fs~iv~rIQk~Cn~ns~~ 73 (414)
T PF10254_consen 3 DQLNHILISDDQLPE-NIILVNTSDWQGQF------LSDLLQEHML--PVVCTCSTADVQAAFSAIVSRIQKFCNCNSSP 73 (414)
T ss_pred hhhhhhhccCCCCCc-eEEEEecCccchhH------HHHHHhhcCC--CeEecCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 456666644344454 56677865433332 5566765543 356676666665544333210 11
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
...--|+++|||--++-|+...++.
T Consensus 74 p~~vKV~v~G~~~y~~~VLr~yVE~ 98 (414)
T PF10254_consen 74 PPPVKVAVAGGQSYLSAVLRAYVEQ 98 (414)
T ss_pred CCceEEEEEccHHHHHHHHHHHHHH
Confidence 2344699999999999999987764
No 69
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=87.29 E-value=4.3 Score=41.86 Aligned_cols=77 Identities=10% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeC-----CCChHHHHHHHhhhhhcCC-CcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQ-----RAGQAFDVMASTKNKELSS-YDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~-----~~~ha~~~~~~~~~~~~~~-~d~IV~vGGDGT 123 (438)
.+++++||..+..- ....++|...|+.+++++..+ ... .-....++++.+.+...++ +|.||++|| |+
T Consensus 25 ~~~~~lvVtd~~v~----~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G~ 99 (354)
T cd08199 25 GSGRRFVVVDQNVD----KLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-GV 99 (354)
T ss_pred CCCeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-cH
Confidence 56889999876552 123357999999999887753 221 2233444444443322222 399999988 77
Q ss_pred HHHHHHhhh
Q 037501 124 FNEILNGFL 132 (438)
Q Consensus 124 v~EVvNGL~ 132 (438)
+..+.-.+.
T Consensus 100 v~D~ak~~A 108 (354)
T cd08199 100 LTDVAGLAA 108 (354)
T ss_pred HHHHHHHHH
Confidence 878776654
No 70
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=87.17 E-value=3.4 Score=42.96 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=55.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC----CChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR----AGQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~----~~ha 97 (438)
..+.|.....+....+++ .. . ||++|+..+...+ ...+++|...|+.+++++.++.-.. ....
T Consensus 2 ~~i~fG~g~l~~l~~~~~-------~~--g-~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v 68 (386)
T cd08191 2 GTLLFGAGQRRQLPRLAA-------RL--G-SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSEL 68 (386)
T ss_pred CeEEECcCHHHHHHHHHH-------Hc--C-CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHHH
Confidence 346676665544444322 21 2 7888888655433 2457789999999999887652111 1112
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.+.++.+. ..+.|.||++|| |.+..+.-.+
T Consensus 69 ~~~~~~~~---~~~~D~IIaiGG-GS~iD~aK~i 98 (386)
T cd08191 69 CDAASAAA---RAGPDVIIGLGG-GSCIDLAKIA 98 (386)
T ss_pred HHHHHHHH---hcCCCEEEEeCC-chHHHHHHHH
Confidence 23333322 257899999998 6666666554
No 71
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=87.11 E-value=7.3 Score=39.93 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=57.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC--hHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG--QAFD 99 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~--ha~~ 99 (438)
..+.|.....+.+..+++.+ +..++++||..+..-+ ...+++...|+..+ ++.+++...+. ...+
T Consensus 12 ~~i~~G~g~l~~l~~~l~~~--------~~~~~~livtd~~~~~----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~ 78 (350)
T PRK00843 12 RDVVVGHGVLDDIGDVCSDL--------KLTGRALIVTGPTTKK----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEK 78 (350)
T ss_pred CeEEECCCHHHHHHHHHHHh--------CCCCeEEEEECCcHHH----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHH
Confidence 45777776666555544322 1126889998876532 22357888898887 66655443332 2334
Q ss_pred HHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 100 VMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 100 ~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+++.+.+ .+.|.||++|| |++..+.-.+.
T Consensus 79 ~~~~~~~---~~~d~IIaiGG-Gsv~D~ak~vA 107 (350)
T PRK00843 79 VEEKAKD---VNAGFLIGVGG-GKVIDVAKLAA 107 (350)
T ss_pred HHHHhhc---cCCCEEEEeCC-chHHHHHHHHH
Confidence 4444322 35799999998 88888886654
No 72
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=86.42 E-value=5.5 Score=43.48 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=45.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
++.++++.+.. ....+++...|+.+|+.+...+...+. .+.++.+.+.+...++.|.||++|| |++..
T Consensus 210 ~k~~iV~d~~v-----~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv~D 283 (542)
T PRK14021 210 VKVALIHTQPV-----QRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAATD 283 (542)
T ss_pred CeEEEEECccH-----HHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHHHH
Confidence 56777776433 124567899999988865443333332 2233334443323347899999998 88888
Q ss_pred HHHhhh
Q 037501 127 ILNGFL 132 (438)
Q Consensus 127 VvNGL~ 132 (438)
+.-.+.
T Consensus 284 ~AKfvA 289 (542)
T PRK14021 284 LAGFVA 289 (542)
T ss_pred HHHHHH
Confidence 876554
No 73
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=86.03 E-value=5.1 Score=41.80 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=64.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH---
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA--- 97 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha--- 97 (438)
|..+-|.....+.+..++.+ .+-||.+|+--|.-- ....+++|...|+.+++++.++.--.++--
T Consensus 7 p~~i~fG~g~l~~l~~~~~~---------~g~~r~liVTd~~~~---~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~ 74 (377)
T COG1454 7 PTEILFGRGSLKELGEEVKR---------LGAKRALIVTDRGLA---KLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIET 74 (377)
T ss_pred CceEEecCChHHHHHHHHHh---------cCCCceEEEECCccc---cchhHHHHHHHHHhcCCeEEEecCCCCCCCHHH
Confidence 67788888888777776443 144788999887632 234678999999999998887642222222
Q ss_pred -HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 98 -FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 98 -~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.+-++.+ ...++|.||++|| |+.-.+..++
T Consensus 75 v~~~~~~~---~~~~~D~iIalGG-GS~~D~AK~i 105 (377)
T COG1454 75 VEAGAEVA---REFGPDTIIALGG-GSVIDAAKAI 105 (377)
T ss_pred HHHHHHHH---HhcCCCEEEEeCC-ccHHHHHHHH
Confidence 2222333 2367999999999 6666666654
No 74
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=85.64 E-value=4.5 Score=41.55 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=57.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~h 96 (438)
|..+.|.....+....++ ... + +|++|+.-+.+-+.. ..+++|...|+.+++++.++. ...+ ..
T Consensus 4 p~~i~~G~g~l~~l~~~~-------~~~-g--~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~ 71 (357)
T cd08181 4 PTKVYFGENCVEKHGEEL-------AAL-G--KRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENPSLET 71 (357)
T ss_pred CCeEEECCCHHHHHHHHH-------HHc-C--CEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCcCHHH
Confidence 355778876665544432 211 2 789999776654332 346789999999999887652 1122 12
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..+.++.+. ..+.|.||++|| |++..+.-.
T Consensus 72 v~~~~~~~~---~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 72 IMEAVEIAK---KFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-chHHHHHHH
Confidence 333444332 257899999999 666666654
No 75
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=85.36 E-value=3.5 Score=43.13 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=55.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~--~h 96 (438)
|..+.|+....+.+-.++.. . ..|+++|+--+.- .....+++|...|+++|+++.++ ++..+ ..
T Consensus 27 P~~i~fG~g~~~~l~~~~~~-------~--g~~~~lvv~~~~~---~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~ 94 (395)
T PRK15454 27 PPVTLCGPGAVSSCGQQAQT-------R--GLKHLFVMADSFL---HQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITD 94 (395)
T ss_pred CCeEEECcCHHHHHHHHHHh-------c--CCCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHH
Confidence 45688887776655544332 1 2367777644322 11345788999999999988765 22222 22
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..+.++.+. ..++|.||++||=-.+ .+.
T Consensus 95 v~~~~~~~r---~~~~D~IiavGGGS~i-D~A 122 (395)
T PRK15454 95 VCAAVAQLR---ESGCDGVIAFGGGSVL-DAA 122 (395)
T ss_pred HHHHHHHHH---hcCcCEEEEeCChHHH-HHH
Confidence 344444433 2689999999995444 443
No 76
>PLN02834 3-dehydroquinate synthase
Probab=84.89 E-value=3.8 Score=43.49 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE---EeC-----CCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI---VTQ-----RAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~---~T~-----~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.++++||.++.-.+ ...++|...|+.+|+++.+. +.. ......++++.+.+...++.|.||++|| |+
T Consensus 100 g~rvlIVtD~~v~~----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-Gs 174 (433)
T PLN02834 100 GKRVLVVTNETVAP----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-GV 174 (433)
T ss_pred CCEEEEEECccHHH----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-hH
Confidence 37899998765532 24567999999999876652 221 1223334444443323345669999988 77
Q ss_pred HHHHHHhh
Q 037501 124 FNEILNGF 131 (438)
Q Consensus 124 v~EVvNGL 131 (438)
+..+.-.+
T Consensus 175 v~D~ak~~ 182 (433)
T PLN02834 175 IGDMCGFA 182 (433)
T ss_pred HHHHHHHH
Confidence 77777543
No 77
>PRK10586 putative oxidoreductase; Provisional
Probab=84.45 E-value=8.1 Score=39.95 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=42.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+|.+||.-+ .......+.+.+.|+.+++.+..+.-+. ..+..++++.. ..+.|.||++|| |.+..+.-.+
T Consensus 35 ~~~lvv~g~----~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~----~~~~d~iiavGG-Gs~iD~aK~~ 105 (362)
T PRK10586 35 SRAVWIYGE----RAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAAS----GDDRQVVIGVGG-GALLDTAKAL 105 (362)
T ss_pred CeEEEEECh----HHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHh----ccCCCEEEEecC-cHHHHHHHHH
Confidence 677777533 2222333567888998888764332122 22233333322 246799999998 6777777766
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
..
T Consensus 106 a~ 107 (362)
T PRK10586 106 AR 107 (362)
T ss_pred Hh
Confidence 54
No 78
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=83.24 E-value=7.9 Score=39.39 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=50.3
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--hHH
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--QAF 98 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--ha~ 98 (438)
.+.|.....+....++.. . ..|+++|+..+. -....++++...|+..++ .++. ...+. ...
T Consensus 3 ~i~~G~g~l~~l~~~l~~-------~--g~~~~livt~~~----~~~~~~~~v~~~l~~~~~--~~~~~~~~~p~~~~v~ 67 (337)
T cd08177 3 RVVFGPGALAALAAELER-------L--GASRALVLTTPS----LATKLAERVASALGDRVA--GTFDGAVMHTPVEVTE 67 (337)
T ss_pred eEEECCCHHHHHHHHHHH-------c--CCCeEEEEcChH----HHHHHHHHHHHHhccCCc--EEeCCCCCCCCHHHHH
Confidence 456665555444333221 1 236788886532 222356678888887643 2221 11111 222
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+.++.+. ..+.|.||++|| |++..+.-.+..
T Consensus 68 ~~~~~~~---~~~~d~IIaiGG-Gs~iD~aK~ia~ 98 (337)
T cd08177 68 AAVAAAR---EAGADGIVAIGG-GSTIDLAKAIAL 98 (337)
T ss_pred HHHHHHH---hcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 3333322 257899999998 888888876643
No 79
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=83.09 E-value=3.8 Score=42.39 Aligned_cols=95 Identities=18% Similarity=0.132 Sum_probs=56.3
Q ss_pred EEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--C
Q 037501 20 VLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--G 95 (438)
Q Consensus 20 ~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~ 95 (438)
.|..+.|.....+....+++.+ ..|+++|+..+..-+ ...+++|...|+.+++++.++. ...+ .
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~---------g~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~ 70 (374)
T cd08189 3 PKPKLFVGSGSLAQLPAAISQL---------GVKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPTIE 70 (374)
T ss_pred CCceEEECcCHHHHHHHHHHhc---------CCCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcCHH
Confidence 3456778876665554443221 236888887654421 2356789999999998876552 1111 1
Q ss_pred hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 96 QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 96 ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
...+.++.+. ..+.|.||++|| |++-.+.-.
T Consensus 71 ~v~~~~~~~~---~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 71 NVEAGLALYR---ENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred HHHHHHHHHH---hcCCCEEEEeCC-ccHHHHHHH
Confidence 1233333332 257899999999 555555543
No 80
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=82.98 E-value=2.4 Score=43.58 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=55.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~h 96 (438)
|..+.|+....+.+..+ +... +|++||..| +-.. ...+++|...|+++++++.++. ...+ .+
T Consensus 1 P~~i~~G~g~l~~l~~~-------l~~~----gr~lvVt~~-~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~ 66 (366)
T PF00465_consen 1 PTKIIFGRGALEELGEE-------LKRL----GRVLVVTDP-SLSK--SGLVDRVLDALEEAGIEVQVFDGVGPNPTLED 66 (366)
T ss_dssp ESEEEESTTGGGGHHHH-------HHCT----TEEEEEEEH-HHHH--HTHHHHHHHHHHHTTCEEEEEEEESSS-BHHH
T ss_pred CCcEEEccCHHHHHHHH-------HHhc----CCEEEEECc-hHHh--CccHHHHHHHHhhCceEEEEEecCCCCCcHHH
Confidence 34566776655444443 2211 389999987 3322 2367889999999999987665 2222 23
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..+.++.+. ..+.|.||++||=-+ -.+.-.
T Consensus 67 v~~~~~~~~---~~~~D~IIaiGGGS~-~D~aK~ 96 (366)
T PF00465_consen 67 VDEAAEQAR---KFGADCIIAIGGGSV-MDAAKA 96 (366)
T ss_dssp HHHHHHHHH---HTTSSEEEEEESHHH-HHHHHH
T ss_pred HHHHHHHHH---hcCCCEEEEcCCCCc-CcHHHH
Confidence 344444443 257899999999554 444433
No 81
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=82.96 E-value=7.8 Score=40.09 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=57.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CCh
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~h 96 (438)
|..+.|+....+..... +.. . . +|++|+.-+.+-+. ...+++|...|+.+++++.++. ... -..
T Consensus 4 p~~i~fG~g~l~~l~~~-------~~~-~-g-~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~ 71 (380)
T cd08185 4 PTKIVFGAGKLNELGEE-------ALK-P-G-KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNPTTTT 71 (380)
T ss_pred CCeEEECcCHHHHHHHH-------HHh-c-C-CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCCCHHH
Confidence 34577876665544433 221 1 2 78999987665322 3567899999999999886552 211 123
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+.++.+. ..++|.||++|| |.+-.+.-.+
T Consensus 72 v~~~~~~~~---~~~~D~IiavGG-GS~iD~aK~i 102 (380)
T cd08185 72 VMEGAALAR---EEGCDFVVGLGG-GSSMDTAKAI 102 (380)
T ss_pred HHHHHHHHH---HcCCCEEEEeCC-ccHHHHHHHH
Confidence 334444432 257899999998 5555555443
No 82
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=82.94 E-value=3.8 Score=41.90 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC------CCChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ------RAGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~------~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..++++|+..+..-+ ...+++...|+.+++++.++.-. .-....++++.+.+...++.|.||++|| |++
T Consensus 23 ~~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv 97 (345)
T cd08195 23 KGSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-GVV 97 (345)
T ss_pred CCCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hHH
Confidence 457899998866532 34578999999998877654322 2234445555544323345599999998 777
Q ss_pred HHHHHhhh
Q 037501 125 NEILNGFL 132 (438)
Q Consensus 125 ~EVvNGL~ 132 (438)
..+.-.+.
T Consensus 98 ~D~ak~vA 105 (345)
T cd08195 98 GDLAGFVA 105 (345)
T ss_pred HhHHHHHH
Confidence 77775543
No 83
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=82.35 E-value=7 Score=40.52 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=57.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~--~h 96 (438)
|..+.|.....+..-..++. . .||++|+.-+.+.+.. ..+++|...|+.+|+++.++.- ..+ ..
T Consensus 7 p~~i~~G~g~~~~l~~~~~~-------~---~~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~ 74 (382)
T cd08187 7 PTKIIFGKGTESELGKELKK-------Y---GKKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNPRLET 74 (382)
T ss_pred CCEEEECCCHHHHHHHHHHH-------h---CCEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCCCHHH
Confidence 35577887666544443322 1 2788888766554332 4567899999999988765421 111 23
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+.++.+. ..++|.||++|| |++..+.-++
T Consensus 75 v~~~~~~~~---~~~~D~IIaiGG-GS~iD~aK~i 105 (382)
T cd08187 75 VREGIELCK---EEKVDFILAVGG-GSVIDSAKAI 105 (382)
T ss_pred HHHHHHHHH---HcCCCEEEEeCC-hHHHHHHHHH
Confidence 333444332 257899999999 6666666554
No 84
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=82.07 E-value=7.6 Score=40.29 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=47.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC---CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ---RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~---~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.||++|+..+.+-+. ...+++|...|+++++++.++. .+ ......+.++.+. ..+.|.||++|| |++..+
T Consensus 26 ~kr~livtd~~~~~~--~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~---~~~~D~IIaiGG-GS~iD~ 99 (383)
T cd08186 26 ISKVLLVTGKSAYKK--SGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR---EFGAQAVIAIGG-GSPIDS 99 (383)
T ss_pred CCEEEEEcCccHHhh--cChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCC-ccHHHH
Confidence 478999887665432 2447889999999999887653 11 1122334444433 246899999999 666666
Q ss_pred HHhh
Q 037501 128 LNGF 131 (438)
Q Consensus 128 vNGL 131 (438)
.-.+
T Consensus 100 aK~i 103 (383)
T cd08186 100 AKSA 103 (383)
T ss_pred HHHH
Confidence 5443
No 85
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=82.06 E-value=4.8 Score=41.63 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=53.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~--~h 96 (438)
|..+.|+....+.+ .+. . .+|++|+..+.+-+. ...+++|...|+.+++++.++.- ..+ ..
T Consensus 5 p~~i~~G~g~l~~l-------~~~-----~-~~r~livt~~~~~~~--~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~ 69 (375)
T cd08179 5 PRDIYFGKGSLEYL-------KTL-----K-GKKAFIVTGGGSMKK--FGFLDKVEAYLKEAGIEVEVFEGVEPDPSVET 69 (375)
T ss_pred CceEEECcCHHHHH-------HHh-----c-CCeEEEEeCchHHHh--CChHHHHHHHHHHcCCeEEEeCCCCCCcCHHH
Confidence 35577887655443 111 1 277888865443222 24567899999999998876532 122 22
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..+.++.+. ..+.|.||++|| |++-.+.-.
T Consensus 70 v~~~~~~~~---~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 70 VLKGAEAMR---EFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-ccHHHHHHH
Confidence 334444332 257899999999 555555444
No 86
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=82.04 E-value=5.8 Score=41.13 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.|+++|+.-+..-+ ...+++|...|+++++++.++. ...+ ....+.++.+. ..++|.||++|| |++..+
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~---~~~~D~IIaiGG-GS~iD~ 102 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFK---ASGADYLIAIGG-GSPQDT 102 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHH---hcCCCEEEEeCC-hHHHHH
Confidence 36888888753321 2357889999999999887652 1122 22233333332 257899999999 566666
Q ss_pred HH
Q 037501 128 LN 129 (438)
Q Consensus 128 vN 129 (438)
.-
T Consensus 103 aK 104 (382)
T PRK10624 103 CK 104 (382)
T ss_pred HH
Confidence 54
No 87
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=81.97 E-value=7.7 Score=39.98 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.|+++|+..+..- ....+++|...|+.+|+++.++. ...+. ...+.++.+. ..+.|.||++|| |++..+
T Consensus 24 ~~~~liv~~~~~~---~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~---~~~~d~IIaiGG-GSviD~ 96 (370)
T cd08192 24 IKRPLIVTDPGLA---ALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYR---AGGCDGVIAFGG-GSALDL 96 (370)
T ss_pred CCeEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH---hcCCCEEEEeCC-chHHHH
Confidence 3788888765441 12357889999999999886652 11111 2233333332 257899999999 666666
Q ss_pred HHhh
Q 037501 128 LNGF 131 (438)
Q Consensus 128 vNGL 131 (438)
.-.+
T Consensus 97 aK~i 100 (370)
T cd08192 97 AKAV 100 (370)
T ss_pred HHHH
Confidence 6554
No 88
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=81.33 E-value=6.9 Score=40.24 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.++++|+..+..-+ ...+++|...|+..++++.++. +.. .....++++.+. ..+.|.||++|| |++..+
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~---~~~~d~IiaiGG-Gs~~D~ 95 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYR---EEGCDGVIAVGG-GSVLDT 95 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHH---hcCCCEEEEeCC-chHHHH
Confidence 37889988766543 2456789999998888876552 222 223344444443 246899999999 555555
Q ss_pred HHhh
Q 037501 128 LNGF 131 (438)
Q Consensus 128 vNGL 131 (438)
.-.+
T Consensus 96 AK~v 99 (370)
T cd08551 96 AKAI 99 (370)
T ss_pred HHHH
Confidence 5443
No 89
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=81.32 E-value=6.6 Score=40.70 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=55.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--Ch
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~h 96 (438)
|..+.|+....+.....+.. . ..||++|+..+..-+ ...+++|...|+++++++.++. ...+ ..
T Consensus 7 p~~i~fG~g~l~~l~~~l~~-------~--g~~r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~ 74 (379)
T TIGR02638 7 NETSYFGAGAIEDIVDEVKR-------R--GFKKALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNPTITV 74 (379)
T ss_pred CCeEEECcCHHHHHHHHHHh-------c--CCCEEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCcCHHH
Confidence 34567876655444333221 1 237888888654321 2357789999999999887652 1111 22
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..+.++.+. ..+.|.||++|| |.+-.+.-+
T Consensus 75 v~~~~~~~~---~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 75 VKAGVAAFK---ASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-hHHHHHHHH
Confidence 333343332 257899999999 555555543
No 90
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=80.92 E-value=4.8 Score=41.59 Aligned_cols=95 Identities=15% Similarity=0.189 Sum_probs=56.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CCh
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~h 96 (438)
|..+.|.....+....+++.+ ..|+++|+.-+.- .....+++|...|+++++++.++. ... ...
T Consensus 4 p~~i~~G~g~l~~l~~~l~~~---------~~~~~livt~~~~---~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~ 71 (376)
T cd08193 4 PPRIVFGAGSLARLGELLAAL---------GAKRVLVVTDPGI---LKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAV 71 (376)
T ss_pred CCeEEECcCHHHHHHHHHHHc---------CCCeEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHH
Confidence 345778876665554443221 2367888765322 112357889999999998876542 111 122
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+.++.+. ..+.|.||++|| |++..+.-.+
T Consensus 72 v~~~~~~~~---~~~~D~IIaiGG-Gs~iD~aK~i 102 (376)
T cd08193 72 VEAAVEAAR---AAGADGVIGFGG-GSSMDVAKLV 102 (376)
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-chHHHHHHHH
Confidence 334444443 257899999998 6666665543
No 91
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=80.65 E-value=8.8 Score=39.74 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=57.1
Q ss_pred ceEEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC-
Q 037501 18 LWVLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA- 94 (438)
Q Consensus 18 ~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~- 94 (438)
+|.+..+.|+....+.....+..+ ..++++|+..+..- ....+++|...|+.+++++.++. ...+
T Consensus 3 ~~~~~~i~~G~g~l~~l~~~l~~~---------g~~~~livt~~~~~---~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~ 70 (377)
T cd08188 3 KFVAPEIIFGRGALKLAGRYARRL---------GAKKVLLVSDPGVI---KAGWVDRVIESLEEAGLEYVVFSDVSPNPR 70 (377)
T ss_pred CccCCceEECcCHHHHHHHHHHHc---------CCCeEEEEeCcchh---hCccHHHHHHHHHHcCCeEEEeCCCCCCCC
Confidence 456666888877665554443221 23688888764321 11246789999999998887652 1222
Q ss_pred -ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 95 -GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 95 -~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.+..+.++.+. ..+.|.||++|| |.+-.+.-
T Consensus 71 ~~~v~~~~~~~~---~~~~d~IIaiGG-GsviD~AK 102 (377)
T cd08188 71 DEEVMAGAELYL---ENGCDVIIAVGG-GSPIDCAK 102 (377)
T ss_pred HHHHHHHHHHHH---hcCCCEEEEeCC-chHHHHHH
Confidence 12333343332 257899999999 55555553
No 92
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=79.96 E-value=8 Score=40.00 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=56.7
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--h
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--Q 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--h 96 (438)
|..+.|+....+....++..+ ..|+++|+..+..-+ ...+++|+..|+.+++++.++. ...+. .
T Consensus 6 p~~i~~G~g~l~~l~~~l~~~---------g~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~ 73 (377)
T cd08176 6 PPTNLFGAGAIKEIGDELKNL---------GFKKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNPTITN 73 (377)
T ss_pred CCeEEECcCHHHHHHHHHHHh---------CCCeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHH
Confidence 355778876665554443221 236788887654322 2457889999999999886652 11221 2
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+.++.+. ..+.|.||++|| |++..+.-.+
T Consensus 74 v~~~~~~~~---~~~~D~IIavGG-GS~iD~aK~i 104 (377)
T cd08176 74 VKDGLAVFK---KEGCDFIISIGG-GSPHDCAKAI 104 (377)
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-cHHHHHHHHH
Confidence 233443332 257899999998 6666655443
No 93
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=77.53 E-value=11 Score=39.69 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=52.8
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--hHH
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--QAF 98 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--ha~ 98 (438)
.+.|.....+.+..+++.+ ..++++|+.-+..-+ ...+++|...|+.+|+++.++. ...+. ...
T Consensus 3 ~i~fG~g~~~~l~~~l~~~---------g~~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~ 70 (414)
T cd08190 3 NIRFGPGVTAEVGMDLKNL---------GARRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFK 70 (414)
T ss_pred eEEECcCHHHHHHHHHHHc---------CCCeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHH
Confidence 3566666555555543321 237888887654321 2346889999999999887652 11221 223
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
+.++.+. ..+.|.||++|| |++-.+.
T Consensus 71 ~~~~~~~---~~~~D~IIaiGG-GSviD~A 96 (414)
T cd08190 71 DAIAFAK---KGQFDAFVAVGG-GSVIDTA 96 (414)
T ss_pred HHHHHHH---hcCCCEEEEeCC-ccHHHHH
Confidence 3333332 257899999999 4444443
No 94
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=77.09 E-value=10 Score=39.38 Aligned_cols=88 Identities=14% Similarity=0.099 Sum_probs=52.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC----ChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA----GQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~----~ha 97 (438)
..+.|+....+.+...++. . .-|+++|+.-+.. +....+++|...|+++++.+.++.-..+ ...
T Consensus 10 ~~i~~G~g~~~~l~~~~~~-------~--g~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v 77 (383)
T PRK09860 10 SVNVIGADSLTDAMNMMAD-------Y--GFTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENV 77 (383)
T ss_pred CeEEECcCHHHHHHHHHHh-------c--CCCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHH
Confidence 4577887776555444322 1 2368887765322 1234578999999999998765532111 233
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
.+.++.+. ..+.|.||++||=-.+
T Consensus 78 ~~~~~~~~---~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 78 AAGLKLLK---ENNCDSVISLGGGSPH 101 (383)
T ss_pred HHHHHHHH---HcCCCEEEEeCCchHH
Confidence 34443332 2579999999994443
No 95
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=75.68 E-value=12 Score=38.57 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-e-CCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-T-QRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T-~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+|++|+.-+..- ..+.+...|+.+++++.++. . ..+ ....++++.+. ..++|.||++|| |++..+
T Consensus 23 ~~~~livtd~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~---~~~~D~IIavGG-Gs~~D~ 92 (367)
T cd08182 23 GKRVLLVTGPRSA------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLR---EFGPDAVLAVGG-GSVLDT 92 (367)
T ss_pred CCeEEEEeCchHH------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHH---hcCcCEEEEeCC-cHHHHH
Confidence 3688888654332 34568888988888776542 1 111 12334444332 247899999998 666666
Q ss_pred HHhh
Q 037501 128 LNGF 131 (438)
Q Consensus 128 vNGL 131 (438)
.-.+
T Consensus 93 aK~i 96 (367)
T cd08182 93 AKAL 96 (367)
T ss_pred HHHH
Confidence 5544
No 96
>PRK06756 flavodoxin; Provisional
Probab=75.61 E-value=12 Score=32.98 Aligned_cols=70 Identities=21% Similarity=0.345 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvN 129 (438)
++++||+ .|..|..+++.+.|...|+..|++++++........ . ++..+|.|+++. |+|.+...+.
T Consensus 2 mkv~IiY--~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~----~-----~~~~~d~vi~gspt~~~g~~p~~~~ 70 (148)
T PRK06756 2 SKLVMIF--ASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEA----S-----ILEQYDGIILGAYTWGDGDLPDDFL 70 (148)
T ss_pred ceEEEEE--ECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCH----H-----HHhcCCeEEEEeCCCCCCCCcHHHH
Confidence 4788888 456677888888898889988988876644322111 1 235688776663 7787776555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.++.
T Consensus 71 ~fl~ 74 (148)
T PRK06756 71 DFYD 74 (148)
T ss_pred HHHH
Confidence 5544
No 97
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=75.52 E-value=69 Score=30.07 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=58.4
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~ 103 (438)
+...+.+....+++.+.... +.+++.++..... .+....+.+...+++.|+++.....- ...+....+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~~v~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~ 185 (298)
T cd06268 114 TAPSDAQQAAALADYLAEKG-----KVKKVAIIYDDYA---YGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAK 185 (298)
T ss_pred cccCcHHHHHHHHHHHHHhc-----CCCEEEEEEcCCc---hhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHH
Confidence 34455555555555554432 3578888876543 23344556778888888766433221 22355666666
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.. .+.|.|++++.......++..+...
T Consensus 186 l~~---~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 186 LKA---AGPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred HHh---cCCCEEEEccccchHHHHHHHHHHc
Confidence 542 4568888776656677788777654
No 98
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=72.48 E-value=15 Score=38.31 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE----Ee---CCC----ChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI----VT---QRA----GQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~----~T---~~~----~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
..++++|+.++.-.+ ......+++...|+.++++++++ +. +.. ....++.+.+.+...++.|.||++|
T Consensus 29 ~~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 29 ARPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 347899999977654 21234578889998888654422 11 111 1223445555443445667999999
Q ss_pred CCchHHHHHHhhh
Q 037501 120 GDGFFNEILNGFL 132 (438)
Q Consensus 120 GDGTv~EVvNGL~ 132 (438)
| |.+..+.-.+.
T Consensus 108 G-G~v~D~ag~vA 119 (369)
T cd08198 108 G-GAVLDAVGYAA 119 (369)
T ss_pred C-hHHHHHHHHHH
Confidence 8 88888875554
No 99
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=71.92 E-value=12 Score=37.27 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=44.5
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhhh-cCCCcEEEE-EcCCchHHHHH
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNKE-LSSYDGVLA-VGGDGFFNEIL 128 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~~-~~~~d~IV~-vGGDGTv~EVv 128 (438)
-||.|.++-... ..+++....|+..|+++.+-.+-. ++..++=++++.+.- .+..|+|++ .||+|+. +++
T Consensus 2 ~iiapSs~~~~~-~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL 79 (282)
T cd07025 2 GIVAPSSPIDEE-ERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN-RLL 79 (282)
T ss_pred EEEeCCCCCCcH-HHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-Hhh
Confidence 378899886543 667888999999998776544322 344444444443211 235676665 5899975 444
Q ss_pred Hh
Q 037501 129 NG 130 (438)
Q Consensus 129 NG 130 (438)
..
T Consensus 80 ~~ 81 (282)
T cd07025 80 PY 81 (282)
T ss_pred hh
Confidence 43
No 100
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=70.95 E-value=10 Score=39.66 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=48.2
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE----------eCCC-ChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV----------TQRA-GQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~----------T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++++||..+.--+-. ....+++...|..+++++++.. .+.. ....++.+.+.+...++.|.||++||
T Consensus 42 ~~r~liVtD~~v~~~~-~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGG 120 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGG 120 (389)
T ss_pred CCeEEEEECchHHHhh-hhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCC
Confidence 5789999986654311 2356789999998887654321 1111 22445555554433455679999998
Q ss_pred CchHHHHHHhh
Q 037501 121 DGFFNEILNGF 131 (438)
Q Consensus 121 DGTv~EVvNGL 131 (438)
|++-.+.-.+
T Consensus 121 -Gsv~D~ak~i 130 (389)
T PRK06203 121 -GAVLDMVGYA 130 (389)
T ss_pred -cHHHHHHHHH
Confidence 7777776444
No 101
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=70.52 E-value=10 Score=39.53 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=43.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+|++|+.-+.. .....+++|...|+.+|+++.++. ...+ ....+.++.+. ..++|.||++|| |++..+
T Consensus 21 ~~k~liVtd~~~---~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~---~~~~D~IIaiGG-GS~iD~ 93 (398)
T cd08178 21 KKRAFIVTDRFM---VKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMN---SFKPDTIIALGG-GSPMDA 93 (398)
T ss_pred CCeEEEEcChhH---HhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHH---hcCCCEEEEeCC-ccHHHH
Confidence 378888864332 112357789999999998876542 1122 23344444433 257899999999 455555
Q ss_pred HHh
Q 037501 128 LNG 130 (438)
Q Consensus 128 vNG 130 (438)
.-.
T Consensus 94 AK~ 96 (398)
T cd08178 94 AKI 96 (398)
T ss_pred HHH
Confidence 444
No 102
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=70.01 E-value=6.3 Score=31.18 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=22.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
+.+.|.+++.++...|++.|+.++
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 679999999999999999999876
No 103
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=69.95 E-value=5.4 Score=35.80 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.++++..|++.|++++.+......++ ++.+.+ ...|+|++.|||=.
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i-----~~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAI-----READAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHH-----HHSSEEEE--S-HH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH-HHHHHH-----HhCCEEEECCCCHH
Confidence 35788999999999877766655444 555443 45899999999954
No 104
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=69.54 E-value=41 Score=34.96 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
++.+|+.-+. ..+++. ++.+.|...|+.+.+..... .++...+++.+. ..++|.||.||| |.+..+.-
T Consensus 31 ~~~lvv~g~~-----~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~---~~~~d~vIGVGG-Gk~iD~aK 101 (360)
T COG0371 31 SRALVVTGEN-----TYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAG---EDGADVVIGVGG-GKTIDTAK 101 (360)
T ss_pred CceEEEEChh-----HHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhc---ccCCCEEEEecC-cHHHHHHH
Confidence 6777776432 345554 69999999998555444332 223333443331 157899999998 88888887
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+..+
T Consensus 102 ~~A~~ 106 (360)
T COG0371 102 AAAYR 106 (360)
T ss_pred HHHHH
Confidence 76554
No 105
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=69.46 E-value=1.1e+02 Score=33.91 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=80.0
Q ss_pred EEEEEEecCCCCCCceEEEEEeecCCChHHHHHHHHHHHHHhhhc----cCCCcEEEEEEcCCCCCCChhhhHHHHHHHH
Q 037501 4 FTVHSFQKSKTQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNME----VGRPKNLLIFIHPMSGKGSGRRTWETVAPIF 79 (438)
Q Consensus 4 ~~~~~~~~~~~~~~~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~----~~rpk~llvivNP~sG~g~~~~~~~~v~~~l 79 (438)
..+|.|.+....+.++ .-.+++...|.+++..-++.+...+... .+...++.||. |+..-..+.+++...|
T Consensus 359 ~~v~~ygk~~~r~~rk-mGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~----gs~sd~~~~~~~~~~l 433 (577)
T PLN02948 359 ASVHWYGKPEMRKQRK-MGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIM----GSDSDLPTMKDAAEIL 433 (577)
T ss_pred CEEEEecCCCCCCCCe-eEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEE----CchhhHHHHHHHHHHH
Confidence 3578888754444443 3456666778877766666666554321 11222344544 5555567778899999
Q ss_pred HhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhhc
Q 037501 80 VRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 80 ~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+..|+++++.+.. .+.+..++++++.+ .+.+ .|+++|+.+-+--|+.++...
T Consensus 434 ~~~g~~~~~~v~sahr~~~~~~~~~~~~~~---~~~~v~i~~ag~~~~l~~~~a~~t~~ 489 (577)
T PLN02948 434 DSFGVPYEVTIVSAHRTPERMFSYARSAHS---RGLQVIIAGAGGAAHLPGMVASMTPL 489 (577)
T ss_pred HHcCCCeEEEEECCccCHHHHHHHHHHHHH---CCCCEEEEEcCccccchHHHhhccCC
Confidence 9999999887753 35556677776642 4556 466779999999888887643
No 106
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=68.82 E-value=21 Score=36.64 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--QAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++++|+..|.-- + +++...|+.+++++.++. +..+. ...+.++.+.+.+..+.|.||++|| |.+-.+.
T Consensus 26 ~~~lvvtd~~~~-----~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD~A 97 (347)
T cd08184 26 DPAVFFVDDVFQ-----G--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLDVA 97 (347)
T ss_pred CeEEEEECcchh-----h--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHHHH
Confidence 556666643221 1 456777888888877652 22221 2233333332100127899999998 5555555
Q ss_pred Hhh
Q 037501 129 NGF 131 (438)
Q Consensus 129 NGL 131 (438)
-.+
T Consensus 98 Kai 100 (347)
T cd08184 98 KAV 100 (347)
T ss_pred HHH
Confidence 443
No 107
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=68.78 E-value=67 Score=28.01 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe------CCCCh---HHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT------QRAGQ---AFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T------~~~~h---a~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
...+.++.|.... ...+.....|+..|+++..... +..-+ +.++++.+. ...+|.||++.||+
T Consensus 39 ~~~~r~y~~~~~~-----~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~---~~~~d~ivLvSgD~ 110 (149)
T cd06167 39 IVLARAYGNWTSP-----ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAY---KRRIDTIVLVSGDS 110 (149)
T ss_pred EEEEEEEEecCCc-----hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhh---hcCCCEEEEEECCc
Confidence 4556666665433 2234566778888987654431 11111 223333322 23789999999999
Q ss_pred hHHHHHHhhhhcc
Q 037501 123 FFNEILNGFLSSR 135 (438)
Q Consensus 123 Tv~EVvNGL~~~~ 135 (438)
=+-.+++-|....
T Consensus 111 Df~~~i~~lr~~G 123 (149)
T cd06167 111 DFVPLVERLRELG 123 (149)
T ss_pred cHHHHHHHHHHcC
Confidence 9999999987763
No 108
>PRK05568 flavodoxin; Provisional
Probab=68.76 E-value=16 Score=31.74 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=39.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
++++||+- |+.|..+++.+.+..-+...|++++++....... . ++..+|.||.+.
T Consensus 2 ~~~~IvY~--S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~-~---------~~~~~d~iilgs 56 (142)
T PRK05568 2 KKINIIYW--SGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV-D---------DVKGADVVALGS 56 (142)
T ss_pred CeEEEEEE--CCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH-H---------HHHhCCEEEEEC
Confidence 56888884 5667778888888888888999888775543221 1 235689888765
No 109
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=68.33 E-value=23 Score=34.39 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=44.9
Q ss_pred cCCCcEEEEEEcCCCC----CCCh-hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCcE-EEEEcCC
Q 037501 49 VGRPKNLLIFIHPMSG----KGSG-RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYDG-VLAVGGD 121 (438)
Q Consensus 49 ~~rpk~llvivNP~sG----~g~~-~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d~-IV~vGGD 121 (438)
.+.|+++.+|||=..= ...+ ..-.+.+..+|+..|+++++..=-...+..+.++++.+ .+...+|. |+++=|-
T Consensus 4 ~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sH 83 (241)
T smart00115 4 NSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSH 83 (241)
T ss_pred CCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCC
Confidence 4578888888875431 2222 22345799999999998876543344455555555544 23346774 5556666
Q ss_pred ch
Q 037501 122 GF 123 (438)
Q Consensus 122 GT 123 (438)
|.
T Consensus 84 G~ 85 (241)
T smart00115 84 GE 85 (241)
T ss_pred CC
Confidence 63
No 110
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=68.17 E-value=51 Score=30.31 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=36.2
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh-hcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK-ELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~-~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+..+.|...|++.. .+...-+. +++-.+-+. ..+.+|.+|.|.|||=|..+++-|-++
T Consensus 70 ~l~~~l~~~Gf~pv--~~kG~~Dv-~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~ 128 (160)
T TIGR00288 70 KLIEAVVNQGFEPI--IVAGDVDV-RMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKEN 128 (160)
T ss_pred HHHHHHHHCCceEE--EecCcccH-HHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHC
Confidence 45677777887643 33332211 122221110 126899999999999999999998765
No 111
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=67.86 E-value=13 Score=35.69 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=40.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHH--HHHHHHhcceeEEEEEeCCC---------Ch-HH-------HHH-------HHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWET--VAPIFVRAKVNTKVIVTQRA---------GQ-AF-------DVM-------ASTKN 106 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~--v~~~l~~agi~~~v~~T~~~---------~h-a~-------~~~-------~~~~~ 106 (438)
|+++||+-..+ ...+....|- ....|+++|+++++.-.+.. +. .. +.. ..+.+
T Consensus 2 kkVlills~~~-~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 2 KKIAVILSGCG-VYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CEEEEEEccCC-CCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 57888884222 2224455564 45678889999988754331 00 00 000 12222
Q ss_pred hhcCCCcEEEEEcCCch
Q 037501 107 KELSSYDGVLAVGGDGF 123 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGT 123 (438)
.+.+.||+|++.||-|.
T Consensus 81 v~~~dyDalviPGG~g~ 97 (217)
T PRK11780 81 ADAEDFDALIVPGGFGA 97 (217)
T ss_pred CChhhCCEEEECCCCch
Confidence 23567999999999885
No 112
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=67.51 E-value=19 Score=36.44 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=41.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++++|+..+..-+ ...+++|...|+.+ +++.++. ... .....+.++.+. ..++|.||++|| |.+-.+.
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~---~~~~d~IiaiGG-Gs~~D~a 94 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFL---DFKPDIVIALGG-GSAIDAA 94 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHH---hcCCCEEEEECC-chHHHHH
Confidence 7899998764322 13567888999877 6665442 111 112223333332 257899999999 5555665
Q ss_pred Hh
Q 037501 129 NG 130 (438)
Q Consensus 129 NG 130 (438)
-.
T Consensus 95 Ka 96 (332)
T cd08180 95 KA 96 (332)
T ss_pred HH
Confidence 54
No 113
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.98 E-value=32 Score=31.27 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=45.0
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhhc
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~~ 134 (438)
|...-..+.+++...|++.|+.+++.+.. .+....++++++. ..+++ .|.+.|+++-+--++.++...
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~---~~~~~viIa~AG~~a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYE---ARGADVIIAVAGMSAALPGVVASLTTL 79 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTT---TTTESEEEEEEESS--HHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhc---cCCCEEEEEECCCcccchhhheeccCC
Confidence 55555667788999999999999988765 2334455665542 24566 466789999999999888643
No 114
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=65.67 E-value=24 Score=35.57 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=44.4
Q ss_pred EEEEcCCCCCCC-hhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhhh-cCCCcEEEEE-cCCchHHH
Q 037501 56 LIFIHPMSGKGS-GRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNKE-LSSYDGVLAV-GGDGFFNE 126 (438)
Q Consensus 56 lvivNP~sG~g~-~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~~-~~~~d~IV~v-GGDGTv~E 126 (438)
.-||.|.++-.. ....++.....|+..|+++.+-.+-+ ++..++=++++.+.- ....|+|+|+ ||+|+. +
T Consensus 3 I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-r 81 (308)
T cd07062 3 IAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSN-E 81 (308)
T ss_pred EEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-h
Confidence 468899988532 24567777888999998877655432 233444344433211 2456777665 888864 4
Q ss_pred HHHh
Q 037501 127 ILNG 130 (438)
Q Consensus 127 VvNG 130 (438)
++..
T Consensus 82 lL~~ 85 (308)
T cd07062 82 LLPY 85 (308)
T ss_pred hhhh
Confidence 4433
No 115
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=65.58 E-value=12 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
+.+.|.+++.++...|++.|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 579999999999999999998875
No 116
>PRK05569 flavodoxin; Provisional
Probab=65.15 E-value=19 Score=31.26 Aligned_cols=56 Identities=18% Similarity=0.013 Sum_probs=38.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
++++||+ .|+.|...++.+.|..-+...|++++++....... . ++..+|.|+++..
T Consensus 2 ~ki~iiY--~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~-~---------~~~~~d~iilgsP 57 (141)
T PRK05569 2 KKVSIIY--WSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKV-E---------DVLEADAVAFGSP 57 (141)
T ss_pred CeEEEEE--ECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH-H---------HHhhCCEEEEECC
Confidence 4677777 45577778888889988888888877665443321 1 2357898888763
No 117
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=64.62 E-value=1.1e+02 Score=28.57 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=58.2
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVM 101 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~ 101 (438)
+.+...+.+.....++.+.+. ..+++.+|..... .+....+.++..+++.|+++..... ....+...++
T Consensus 114 ~~~~~~~~~~~~~~~~~l~~~------~~~~v~iv~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 184 (299)
T cd04509 114 FRTGPSDEQQAEALADYIKEY------NWKKVAILYDDDS---YGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLL 184 (299)
T ss_pred EEecCCcHHHHHHHHHHHHHc------CCcEEEEEecCch---HHHHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHH
Confidence 444445555555555444432 2467887775443 2334445677888888877643322 2223455666
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+++.+ ...|+|++++.+.....+++.+...
T Consensus 185 ~~l~~---~~~~~v~~~~~~~~~~~~~~~~~~~ 214 (299)
T cd04509 185 QKLKA---AKPDVIVLCGSGEDAATILKQAAEA 214 (299)
T ss_pred HHHHh---cCCCEEEEcccchHHHHHHHHHHHc
Confidence 66542 3478887777667888888887654
No 118
>PRK06703 flavodoxin; Provisional
Probab=64.29 E-value=26 Score=30.96 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvN 129 (438)
.+++|++ .|..|..+++.+.|...|...+++++++...... .. ++..+|.|+++. |+|-+...+.
T Consensus 2 mkv~IiY--~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-~~---------~l~~~d~viigspt~~~g~~p~~~~ 69 (151)
T PRK06703 2 AKILIAY--ASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD-AE---------ELLAYDGIILGSYTWGDGDLPYEAE 69 (151)
T ss_pred CeEEEEE--ECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC-HH---------HHhcCCcEEEEECCCCCCcCcHHHH
Confidence 4677787 4566788888888988899999888876543321 11 235688777755 6775554333
Q ss_pred h
Q 037501 130 G 130 (438)
Q Consensus 130 G 130 (438)
.
T Consensus 70 ~ 70 (151)
T PRK06703 70 D 70 (151)
T ss_pred H
Confidence 3
No 119
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=64.05 E-value=32 Score=32.06 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=45.4
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHH-HHHHhhhh
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFN-EILNGFLS 133 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~-EVvNGL~~ 133 (438)
.+|+ |.....-...+++.++..++..|+++.+..+.. +....+.++.+. ..++|+||+++.+.... +.+.-+..
T Consensus 3 g~i~-p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgvi~~~~~~~~~~~~~~~l~~ 78 (267)
T cd01536 3 GLVV-PSLNNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLI---AQGVDGIIISPVDSAALTPALKKANA 78 (267)
T ss_pred EEEe-ccccCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCchhHHHHHHHHHH
Confidence 3444 554333334555668888888899888877764 333445555553 24799999998775432 35555543
No 120
>PRK09271 flavodoxin; Provisional
Probab=63.97 E-value=19 Score=32.45 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvNG 130 (438)
+++|++=-.. |.++++.+.|...|...|+++++....... ..++. .++..+|.|+++. |+|.+.+-+..
T Consensus 2 kv~IvY~S~t--GnTe~~A~~ia~~l~~~g~~v~~~~~~~~~-~~~~~-----~~~~~~d~vilgt~T~~~G~~p~~~~~ 73 (160)
T PRK09271 2 RILLAYASLS--GNTREVAREIEERCEEAGHEVDWVETDVQT-LAEYP-----LDPEDYDLYLLGTWTDNAGRTPPEMKR 73 (160)
T ss_pred eEEEEEEcCC--chHHHHHHHHHHHHHhCCCeeEEEeccccc-ccccc-----cCcccCCEEEEECcccCCCcCCHHHHH
Confidence 6778885544 567788889999999999888766543321 11111 1345789888887 78887765555
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
++.
T Consensus 74 f~~ 76 (160)
T PRK09271 74 FIA 76 (160)
T ss_pred HHH
Confidence 543
No 121
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=63.80 E-value=1.1e+02 Score=29.81 Aligned_cols=98 Identities=8% Similarity=-0.011 Sum_probs=56.0
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~~~ 103 (438)
+...+...+...++.+.+. ..+++.+|..+.. .+....+.++..+++.|+++... ......+....+.+
T Consensus 113 ~~~~~~~~~~~~~~~l~~~------g~~~vail~~~~~---~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~ 183 (312)
T cd06333 113 TPQNDRLMAEAILADMKKR------GVKTVAFIGFSDA---YGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLK 183 (312)
T ss_pred cCCCcHHHHHHHHHHHHHc------CCCEEEEEecCcH---HHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHH
Confidence 3455665666655554322 4578888865432 23344556888889888876432 11112233333333
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
+. ..+.|+|++.+-+...-.+++.+....
T Consensus 184 l~---~~~pdaIi~~~~~~~~~~~~~~l~~~g 212 (312)
T cd06333 184 IR---AARPDAVLIWGSGTPAALPAKNLRERG 212 (312)
T ss_pred HH---hCCCCEEEEecCCcHHHHHHHHHHHcC
Confidence 32 246898888876655566888876553
No 122
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=63.77 E-value=16 Score=33.74 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=46.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC--CchHHHHHHhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG--DGFFNEILNGF 131 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG--DGTv~EVvNGL 131 (438)
+++|++-- ..|..+++.+.|...|.. |++++++..+... ..++..||.||+.++ -|.+...+..+
T Consensus 2 kilIvY~S--~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~----------~~~l~~yD~vIlGspi~~G~~~~~~~~f 68 (177)
T PRK11104 2 KTLILYSS--RDGQTRKIASYIASELKE-GIQCDVVNLHRIE----------EPDLSDYDRVVIGASIRYGHFHSALYKF 68 (177)
T ss_pred cEEEEEEC--CCChHHHHHHHHHHHhCC-CCeEEEEEhhhcC----------ccCHHHCCEEEEECccccCCcCHHHHHH
Confidence 57888854 455677888889999987 8887776543211 113467999887776 46777777776
Q ss_pred hhc
Q 037501 132 LSS 134 (438)
Q Consensus 132 ~~~ 134 (438)
+.+
T Consensus 69 l~~ 71 (177)
T PRK11104 69 VKK 71 (177)
T ss_pred HHH
Confidence 654
No 123
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=63.44 E-value=80 Score=27.11 Aligned_cols=79 Identities=10% Similarity=0.160 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhh
Q 037501 34 CEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNK 107 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~ 107 (438)
++.+.+.|++.+... .++..+|.+|.- |...+...|. ......+..|++++.+.-.. .....+..+++.+
T Consensus 9 a~~i~~~l~~~i~~l~~~~~~P~Laii~v---g~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~- 84 (117)
T PF00763_consen 9 AKEIKEELKEEIEKLKEKGITPKLAIILV---GDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE- 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHCT---EEEEEEE---S--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEec---CCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC-
Confidence 444444444444321 134444544432 3445667776 47888899999998776522 2333444455432
Q ss_pred hcCCCcEEEE
Q 037501 108 ELSSYDGVLA 117 (438)
Q Consensus 108 ~~~~~d~IV~ 117 (438)
....++|++
T Consensus 85 -D~~V~GIlv 93 (117)
T PF00763_consen 85 -DPSVHGILV 93 (117)
T ss_dssp --TT-SEEEE
T ss_pred -CCCCCEEEE
Confidence 346778775
No 124
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=63.13 E-value=88 Score=30.67 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=64.3
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE--EEEeCCCChHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK--VIVTQRAGQAFDVM 101 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~--v~~T~~~~ha~~~~ 101 (438)
+.+...+......+++.+.+. ...+++.+|.... ..+....+.++..++++|+++. +.+.....+...++
T Consensus 112 f~~~~~~~~~~~~~~~~~~~~-----~g~~~v~iv~~~~---~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~ 183 (343)
T PF13458_consen 112 FRLSPSDSQQAAALAEYLAKK-----LGAKKVAIVYPDD---PYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALV 183 (343)
T ss_dssp EESS--HHHHHHHHHHHHHHT-----TTTSEEEEEEESS---HHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHH
T ss_pred EEEeccccHHHHHHHHHHHHH-----cCCcEEEEEecCc---hhhhHHHHHHHHHHhhcCceeccceecccccccchHHH
Confidence 445555555555555554432 1368898888542 2344556678999999998852 33344455666666
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.++.. .+.|.|+++++-+..-.++..+...
T Consensus 184 ~~l~~---~~~d~v~~~~~~~~~~~~~~~~~~~ 213 (343)
T PF13458_consen 184 QQLKS---AGPDVVVLAGDPADAAAFLRQLRQL 213 (343)
T ss_dssp HHHHH---TTTSEEEEESTHHHHHHHHHHHHHT
T ss_pred HHHhh---cCCCEEEEeccchhHHHHHHHHHhh
Confidence 66643 5789999999888888899888665
No 125
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=63.09 E-value=29 Score=33.58 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=42.9
Q ss_pred CCCcEEEEEEcCC-----CCCCC-hhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc-EEEEEcCCc
Q 037501 50 GRPKNLLIFIHPM-----SGKGS-GRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD-GVLAVGGDG 122 (438)
Q Consensus 50 ~rpk~llvivNP~-----sG~g~-~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDG 122 (438)
++++++.+|||=. -.... +.+=.+.+..+|+..|+++.+..=-...+..+.++++.+.+...+| .|+++=|-|
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG 85 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG 85 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC
Confidence 4567776666542 12222 2233456999999999887655433344445555555433445677 466667777
Q ss_pred h
Q 037501 123 F 123 (438)
Q Consensus 123 T 123 (438)
.
T Consensus 86 ~ 86 (243)
T cd00032 86 E 86 (243)
T ss_pred C
Confidence 5
No 126
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=61.19 E-value=12 Score=32.60 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH-----HHHHH--HhhhhhcCCCcEEEEEcCCchH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA-----FDVMA--STKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha-----~~~~~--~~~~~~~~~~d~IV~vGGDGTv 124 (438)
+++.|++.|.. ...-+..+...|+.++++++++-.+. +.. ..+.. .+.+.+...||.|++.||.+..
T Consensus 2 ~~v~ill~~g~----~~~e~~~~~~~~~~a~~~v~vvs~~~-~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILVADGV----DAAELSALKAALKAAGANVKVVAPTL-GGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEEcCCc----CHHHHHHHHHHHHHCCCEEEEEecCc-CceecCCCcEEecceeecCCChhhcCEEEECCCccCH
Confidence 56788887622 12223457788899998887764332 110 00100 1111112358999999998864
No 127
>PRK04155 chaperone protein HchA; Provisional
Probab=60.83 E-value=38 Score=34.02 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=26.7
Q ss_pred CCcEEEEEEcCC------CCC--CChhhhHHHH--HHHHHhcceeEEEEEeC
Q 037501 51 RPKNLLIFIHPM------SGK--GSGRRTWETV--APIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 51 rpk~llvivNP~------sG~--g~~~~~~~~v--~~~l~~agi~~~v~~T~ 92 (438)
..||+|+|+.-. .|+ ..+....|.+ ..+|+++|+++++...+
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecC
Confidence 446888888632 344 2444444544 45788999999987543
No 128
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=60.56 E-value=50 Score=32.36 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=32.4
Q ss_pred ChhhhHHHHHHHHHhccee-EEEEEeCCCChH--HHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 67 SGRRTWETVAPIFVRAKVN-TKVIVTQRAGQA--FDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 67 ~~~~~~~~v~~~l~~agi~-~~v~~T~~~~ha--~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
......+...+.|+..|++ ++++.......| .++.+. +...|+|++.|||=
T Consensus 40 ~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~-----l~~ad~I~~~GGnq 93 (250)
T TIGR02069 40 EPREVGERYITIFSRLGVKEVKILDVREREDASDENAIAL-----LSNATGIFFTGGDQ 93 (250)
T ss_pred ChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHH-----HhhCCEEEEeCCCH
Confidence 3444456788899999984 565555432222 233332 35689999999994
No 129
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=60.14 E-value=33 Score=34.64 Aligned_cols=74 Identities=22% Similarity=0.155 Sum_probs=43.9
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC------CCChHHHHHHHhhhhh--cCCCcEEEEE-cCCchHH
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ------RAGQAFDVMASTKNKE--LSSYDGVLAV-GGDGFFN 125 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~------~~~ha~~~~~~~~~~~--~~~~d~IV~v-GGDGTv~ 125 (438)
..-||.|.++.. ....+++....|+..|+++.+-.+- .++..++=++++.+.. .+..++|+|+ ||+|+.
T Consensus 3 ~I~viAPSs~~~-~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~- 80 (305)
T PRK11253 3 LFHLIAPSGYPI-DQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTPNTIVLAVRGGYGAS- 80 (305)
T ss_pred eEEEEeCCCCCC-CHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCCccEEEEecccCCHh-
Confidence 356889998753 3455677778889889876544331 1455555555553211 1117776654 888875
Q ss_pred HHHHh
Q 037501 126 EILNG 130 (438)
Q Consensus 126 EVvNG 130 (438)
+++..
T Consensus 81 rlLp~ 85 (305)
T PRK11253 81 RLLAG 85 (305)
T ss_pred Hhhhh
Confidence 44443
No 130
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=60.11 E-value=11 Score=31.58 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=23.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++|.|.+.+++++..|++.|+..+.
T Consensus 77 Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 77 RKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999885
No 131
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=60.09 E-value=46 Score=29.14 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=49.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.-+.+-++-||.++..+++- -++..+|...|+++- +..+-..-|....++ .+.+.+.+.| +|+-|+|..
T Consensus 35 ~i~~vev~~np~~~~~~g~G--~~~a~~l~~~gvdvv-i~~~iG~~a~~~l~~------~GIkv~~~~~--~~V~e~i~~ 103 (121)
T COG1433 35 EIKNVEVIENPAASAEKGAG--IRIAELLVDEGVDVV-IASNIGPNAYNALKA------AGIKVYVAPG--GTVEEAIKA 103 (121)
T ss_pred cEEEEEEeecccccccCcch--HHHHHHHHHcCCCEE-EECccCHHHHHHHHH------cCcEEEecCC--CCHHHHHHH
Confidence 44667888899776555432 256778888887653 233334455555543 4677777777 999999999
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
+..-
T Consensus 104 ~~~g 107 (121)
T COG1433 104 FLEG 107 (121)
T ss_pred HhcC
Confidence 8765
No 132
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=59.29 E-value=17 Score=30.27 Aligned_cols=31 Identities=10% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCceEE----EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 16 PNLWVL----AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 16 ~~~w~~----~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++.|.. +.+++.++++++-..|+++|+..+.
T Consensus 66 ~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 66 PHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred CceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 455555 7899999999999999999999875
No 133
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.63 E-value=13 Score=31.07 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=23.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++++|.++++++-+.|++.|++++.
T Consensus 74 ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 74 CAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhh
Confidence 6799999999999999999999874
No 134
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=58.41 E-value=58 Score=30.92 Aligned_cols=76 Identities=9% Similarity=0.043 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCCCC-------ChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKG-------SGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g-------~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+.+.+-||+ |....+ --..+++.++..++..|+++.+..++.. ....+.+.+. ..+.|+||+++.+..
T Consensus 2 ~s~~i~vi~-p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~---~~~~dgiii~~~~~~ 76 (275)
T cd06295 2 RTDTIALVV-PEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP-DRDWLARYLA---SGRADGVILIGQHDQ 76 (275)
T ss_pred CceEEEEEe-cCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHH---hCCCCEEEEeCCCCC
Confidence 345566666 654322 1233445588888888988877766543 2333333332 257999999987654
Q ss_pred HHHHHHhhh
Q 037501 124 FNEILNGFL 132 (438)
Q Consensus 124 v~EVvNGL~ 132 (438)
- ..++-+.
T Consensus 77 ~-~~~~~~~ 84 (275)
T cd06295 77 D-PLPERLA 84 (275)
T ss_pred h-HHHHHHH
Confidence 2 3344443
No 135
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.04 E-value=49 Score=31.31 Aligned_cols=75 Identities=7% Similarity=-0.064 Sum_probs=43.0
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCcEEEEEcCCchH-HHHHHh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYDGVLAVGGDGFF-NEILNG 130 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv-~EVvNG 130 (438)
+.|++ |.....--..+++.++..++..|+++.+..+. ......++.+.+. ..++|+||+++.|-.. .+.+..
T Consensus 2 Igvi~-~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgvii~~~~~~~~~~~l~~ 77 (273)
T cd06310 2 IALVP-KGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAI---ARGPDAILLAPTDAKALVPPLKE 77 (273)
T ss_pred eEEEe-cCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHH---HhCCCEEEEcCCChhhhHHHHHH
Confidence 45555 43322222344556778888889888776553 2222334444443 2579999999877532 456655
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 78 ~~~ 80 (273)
T cd06310 78 AKD 80 (273)
T ss_pred HHH
Confidence 543
No 136
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=58.04 E-value=1.4e+02 Score=28.47 Aligned_cols=107 Identities=11% Similarity=0.006 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE-EEEeCC----CChHHHHHH
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK-VIVTQR----AGQAFDVMA 102 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~-v~~T~~----~~ha~~~~~ 102 (438)
..+.+......+.|.+.+......++++.+|..+..........++-.+..|++.++... ++.+.. ...+.+.++
T Consensus 105 ~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (289)
T cd01540 105 MSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRTDGALEALKAPGFPEANIFQAPQKTTDTEGAFDAAA 184 (289)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHHHHHHHHHhcCCCCcceEecccccCcchhhHHHHHH
Confidence 344555667777777766543335577877754322222333445557778887777543 222221 233445454
Q ss_pred HhhhhhcCCCcE-EEEEcCCchHHHHHHhhhhcc
Q 037501 103 STKNKELSSYDG-VLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 103 ~~~~~~~~~~d~-IV~vGGDGTv~EVvNGL~~~~ 135 (438)
.+... ....++ +|++.+|.+...+++.|....
T Consensus 185 ~~l~~-~~~~~~~~i~~~~d~~a~g~~~al~~~g 217 (289)
T cd01540 185 STLTK-NPNVKNWIIYGLNDETVLGAVRATEQSG 217 (289)
T ss_pred HHHHh-CCCcCeeEEEeCCcHHHHHHHHHHHHcC
Confidence 44211 123454 678899999999999887653
No 137
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=57.36 E-value=87 Score=30.97 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=57.9
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~ 103 (438)
+...+.+....+.+.|.+. ..+++.+|+++.+. -+....+.++..+++.|+++.... +....+...++.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~------g~~~~~~i~~~~~~--~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~ 183 (341)
T cd06341 112 FSGGTPASLTTWGDFAKDQ------GGTRAVALVTALSA--AVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQ 183 (341)
T ss_pred ecCCCcchhHHHHHHHHHc------CCcEEEEEEeCCcH--HHHHHHHHHHHHHHHcCCccccccccCCCCCCHHHHHHH
Confidence 3444444555555555432 24778877765431 233445568888899998764332 2223455566666
Q ss_pred hhhhhcCCCcEEEEEcCCc-hHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDG-FFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDG-Tv~EVvNGL~~~ 134 (438)
+.+ .+.|+|++. +|+ ..-.++..+...
T Consensus 184 i~~---~~pdaV~~~-~~~~~a~~~~~~~~~~ 211 (341)
T cd06341 184 AAA---AGADAIITV-LDAAVCASVLKAVRAA 211 (341)
T ss_pred HHh---cCCCEEEEe-cChHHHHHHHHHHHHc
Confidence 643 468988765 566 777788777665
No 138
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=56.22 E-value=25 Score=40.10 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=44.5
Q ss_pred CcEEEEEEcCCCCCCCh--hh-hHHHHHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 52 PKNLLIFIHPMSGKGSG--RR-TWETVAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 52 pk~llvivNP~sG~g~~--~~-~~~~v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
..+++-|.|=+.|=-+. .. .|+.|..+...-|- ++-|.+. .+...+++.+. ..+.|++|++|||||+.
T Consensus 419 g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt---~LGT~R~~~~~~~~~i~~~l~---~~~Id~LivIGGdgs~~ 492 (762)
T cd00764 419 GHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS---ELGTKRTLPKKDLETIAYNFQ---KYGIDGLIIVGGFEAYK 492 (762)
T ss_pred CCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc---cccccCCCcHHHHHHHHHHHH---HcCCCEEEEECChhHHH
Confidence 35788888877774322 22 25567777665553 3344443 33444555553 36789999999999997
Q ss_pred HHH
Q 037501 126 EIL 128 (438)
Q Consensus 126 EVv 128 (438)
-+.
T Consensus 493 ~a~ 495 (762)
T cd00764 493 GLL 495 (762)
T ss_pred HHH
Confidence 554
No 139
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=55.91 E-value=81 Score=29.59 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-CCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-QRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
..+ +++|-..++. .....+.....|++.|++...+.. +.+.+ .++.+. +...|+|++.|||=.
T Consensus 29 ~~~-i~~iptA~~~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~-~~~~~~-----l~~ad~I~~~GG~~~ 92 (210)
T cd03129 29 GAR-VLFIPTASGD--RDEYGEEYRAAFERLGVEVVHLLLIDTAND-PDVVAR-----LLEADGIFVGGGNQL 92 (210)
T ss_pred CCe-EEEEeCCCCC--hHHHHHHHHHHHHHcCCceEEEeccCCCCC-HHHHHH-----HhhCCEEEEcCCcHH
Confidence 344 4444444443 234456788889998987654433 22222 233333 356899999998853
No 140
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=55.78 E-value=1.9e+02 Score=28.76 Aligned_cols=78 Identities=5% Similarity=-0.034 Sum_probs=49.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC----ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA----GQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~----~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+++.+|+.... - +....+.++..|++.|+++...++-.. .+...+++++. ..+.|.|++++.......
T Consensus 134 ~~~~v~ii~~~~~-~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~---~~~~dvvi~~~~~~~~~~ 207 (350)
T cd06366 134 GWRRVATIYEDDD-Y--GSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLK---EKDSRVIVVHFSPDLARR 207 (350)
T ss_pred CCcEEEEEEEcCc-c--cchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHh---cCCCeEEEEECChHHHHH
Confidence 4578888874333 2 233456788889999987754443222 23444455543 246888988888887888
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
++..+...
T Consensus 208 ~~~~a~~~ 215 (350)
T cd06366 208 VFCEAYKL 215 (350)
T ss_pred HHHHHHHc
Confidence 88777654
No 141
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=55.13 E-value=56 Score=37.79 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=55.3
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHH--hcceeEEEEE--eCCC--
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFV--RAKVNTKVIV--TQRA-- 94 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~--~agi~~~v~~--T~~~-- 94 (438)
|..+.|.....+.+..+ +. ..++++|+..+..-+ ...+++|...|+ .+++++.++. ...+
T Consensus 460 P~~i~~G~g~l~~l~~~-------l~----~~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~ 525 (862)
T PRK13805 460 PKKIYFERGSLPYLLDE-------LD----GKKRAFIVTDRFMVE---LGYVDKVTDVLKKRENGVEYEVFSEVEPDPTL 525 (862)
T ss_pred CCeEEECCCHHHHHHHH-------hc----CCCEEEEEECcchhh---cchHHHHHHHHhcccCCCeEEEeCCCCCCcCH
Confidence 35677776655544433 21 237888888654321 235778999998 7788776552 1122
Q ss_pred ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 95 GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 95 ~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
....+.++.+. ..+.|.||++|| |++-.+.-.+
T Consensus 526 ~~v~~~~~~~~---~~~~D~IIaiGG-GSviD~AK~i 558 (862)
T PRK13805 526 STVRKGAELMR---SFKPDTIIALGG-GSPMDAAKIM 558 (862)
T ss_pred HHHHHHHHHHH---hcCCCEEEEeCC-chHHHHHHHH
Confidence 23344444433 257899999998 5665655443
No 142
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=54.94 E-value=74 Score=30.96 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCC-ChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCC
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKG-SGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSY 112 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g-~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~ 112 (438)
...|...|.+++. +.+++++| |.++.. ......+..+..|++.|++++.+.+. . +..+. +...
T Consensus 17 l~~~~~~~~~~~~----~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~---d~~~~-----l~~a 80 (233)
T PRK05282 17 LEHALPLIAELLA----GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--A---DPVAA-----IENA 80 (233)
T ss_pred HHHHHHHHHHHHc----CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--h---hhHHH-----HhcC
Confidence 3444445555543 34555554 555543 33344457899999999887655332 2 22222 3568
Q ss_pred cEEEEEcCCch
Q 037501 113 DGVLAVGGDGF 123 (438)
Q Consensus 113 d~IV~vGGDGT 123 (438)
|+|++-||+=+
T Consensus 81 d~I~v~GGnt~ 91 (233)
T PRK05282 81 EAIFVGGGNTF 91 (233)
T ss_pred CEEEECCccHH
Confidence 99999999864
No 143
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=54.13 E-value=1.3e+02 Score=28.51 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=45.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..|++.++..+... .+....+.++..+++.|+++.........+..+.++++ +...|+|+ +.+|.+...++..
T Consensus 130 g~~~i~~l~~~~~~--~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~dai~-~~~d~~a~~~~~~ 202 (281)
T cd06325 130 DAKTVGVLYNPSEA--NSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSL----AGKVDAIY-VPTDNTVASAMEA 202 (281)
T ss_pred CCcEEEEEeCCCCc--cHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHh----cccCCEEE-EcCchhHHhHHHH
Confidence 45788888765542 23344556778888888765432222233334444443 23457555 5789888888888
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
+...
T Consensus 203 ~~~~ 206 (281)
T cd06325 203 VVKV 206 (281)
T ss_pred HHHH
Confidence 7664
No 144
>PRK15138 aldehyde reductase; Provisional
Probab=54.09 E-value=38 Score=35.29 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=50.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCC--hH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAG--QA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~--ha 97 (438)
..+.|+....+....+++ . .||++|+.-+.+= +....++++...|. ++++.++. +..+. ..
T Consensus 10 ~~i~~G~g~~~~l~~~l~-------~----~~~~livt~~~~~--~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v 74 (387)
T PRK15138 10 TRILFGKGAIAGLREQIP-------A----DARVLITYGGGSV--KKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETL 74 (387)
T ss_pred ceEEECcCHHHHHHHHHh-------c----CCeEEEECCCchH--HhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHH
Confidence 558888877766655432 1 2678887543332 22345677888885 66665542 11221 23
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.+.++.+. ..+.|.||++|| |.+-.+.-
T Consensus 75 ~~~~~~~~---~~~~D~IIaiGG-GS~iD~AK 102 (387)
T PRK15138 75 MKAVKLVR---EEKITFLLAVGG-GSVLDGTK 102 (387)
T ss_pred HHHHHHHH---HcCCCEEEEeCC-hHHHHHHH
Confidence 33333332 257899999999 44444433
No 145
>PRK06490 glutamine amidotransferase; Provisional
Probab=53.93 E-value=24 Score=34.29 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=41.2
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
...++++||.|=.++. ...+..+|+..|++++++.....+. +. .+++.||+||+.||=+++++
T Consensus 5 ~~~~~vlvi~h~~~~~------~g~l~~~l~~~g~~~~v~~~~~~~~---~p-----~~l~~~dgvii~Ggp~~~~d 67 (239)
T PRK06490 5 RDKRPVLIVLHQERST------PGRVGQLLQERGYPLDIRRPRLGDP---LP-----DTLEDHAGAVIFGGPMSAND 67 (239)
T ss_pred CCCceEEEEecCCCCC------ChHHHHHHHHCCCceEEEeccCCCC---CC-----CcccccCEEEEECCCCCCCC
Confidence 3457899998855432 1245677888898888775432211 11 13467999999999987643
No 146
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=53.83 E-value=86 Score=30.92 Aligned_cols=93 Identities=10% Similarity=0.141 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhc
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKEL 109 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~ 109 (438)
+......+++.+++.+ ..-|++.|++||..-. +....+.++...+..|+++..+......+.....+.+.
T Consensus 113 ~~~~~~~~l~l~~~l~----P~~k~igvl~~~~~~~--~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~---- 182 (294)
T PF04392_consen 113 ERPPIEKQLELIKKLF----PDAKRIGVLYDPSEPN--SVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA---- 182 (294)
T ss_dssp E---HHHHHHHHHHHS----TT--EEEEEEETT-HH--HHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC----
T ss_pred CCcCHHHHHHHHHHhC----CCCCEEEEEecCCCcc--HHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh----
Confidence 4455778888777775 2458999999987532 33455678888888899887776666677666666553
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+..|+++ +..|+++..-...++.
T Consensus 183 ~~~da~~-~~~~~~~~~~~~~i~~ 205 (294)
T PF04392_consen 183 EKVDALY-LLPDNLVDSNFEAILQ 205 (294)
T ss_dssp TT-SEEE-E-S-HHHHHTHHHHHH
T ss_pred ccCCEEE-EECCcchHhHHHHHHH
Confidence 4567554 5678888765555543
No 147
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=53.57 E-value=27 Score=29.26 Aligned_cols=24 Identities=4% Similarity=0.304 Sum_probs=22.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
..++|.++++++=+.|+++|+..+
T Consensus 72 ~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 72 GALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred eEEEEEecCHHHHHHHHHHHHHHh
Confidence 579999999999999999999876
No 148
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=53.57 E-value=1.1e+02 Score=29.96 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
++.-+.|=.||.+... ...+..+..+++..|+++-.+.|-+...-.++...+......+.+.|++++||-.
T Consensus 28 ~~d~v~Vt~~~~g~~~--~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~ 98 (274)
T cd00537 28 DPDFVSVTDGAGGSTR--DMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPP 98 (274)
T ss_pred CCCEEEeCCCCCCchh--hhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCC
Confidence 3556666667764322 2334455666666679888888877666555555443333357999999999975
No 149
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=53.50 E-value=49 Score=28.91 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC----------------ChHHHHHHHhhhhhcCCCcEEEE
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA----------------GQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~----------------~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
|+++|.=-..-.+...++.+.+...++..+++++++....- .+..++... +...|+||+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~-----l~~aD~iI~ 76 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDK-----LKEADGIIF 76 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHH-----HHHSSEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhc-----eecCCeEEE
Confidence 45555422223356667778899999999999988855431 222333333 345788887
Q ss_pred EcC--CchHHHHHHhhhhc
Q 037501 118 VGG--DGFFNEILNGFLSS 134 (438)
Q Consensus 118 vGG--DGTv~EVvNGL~~~ 134 (438)
+.= -|.+.-.+..++.+
T Consensus 77 ~sP~y~~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 77 ASPVYNGSVSGQLKNFLDR 95 (152)
T ss_dssp EEEEBTTBE-HHHHHHHHT
T ss_pred eecEEcCcCChhhhHHHHH
Confidence 643 34455555555544
No 150
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=53.28 E-value=14 Score=30.03 Aligned_cols=24 Identities=13% Similarity=0.513 Sum_probs=21.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
+.+.|.+.+.++...|++.|++.|
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 468888999999999999998864
No 151
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=52.67 E-value=55 Score=34.38 Aligned_cols=70 Identities=7% Similarity=-0.029 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHHHHhhh--c----cCC----CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHH
Q 037501 30 DLPTCEMWVNRVNAFLNM--E----VGR----PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFD 99 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~--~----~~r----pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~ 99 (438)
+.++..+|.+.+.+.... . .+| ..+++.|.|.++|-||..- --.+...|...|.++-++-....+++..
T Consensus 88 t~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTt-a~nLA~~LA~~G~rVLlIDlDpQ~~lt~ 166 (405)
T PRK13869 88 TLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTT-SAHLAQYLALQGYRVLAVDLDPQASLSA 166 (405)
T ss_pred cHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHH-HHHHHHHHHhcCCceEEEcCCCCCCHHH
Confidence 467788888888762211 0 112 2379999999999998532 2356677888999988888877776654
Q ss_pred H
Q 037501 100 V 100 (438)
Q Consensus 100 ~ 100 (438)
+
T Consensus 167 ~ 167 (405)
T PRK13869 167 L 167 (405)
T ss_pred H
Confidence 3
No 152
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=52.55 E-value=83 Score=26.96 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHHHHhcceeEEEEEeC----CCChHH--HHHHHhhhhh-cCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQ----RAGQAF--DVMASTKNKE-LSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~----~~~ha~--~~~~~~~~~~-~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
..+...|+..|+++...... ....+. .++..+.... ...+|.||++.||+=+-.+++.|..+
T Consensus 50 ~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 50 KSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 45567788889866544321 112222 2333332211 14469999999999999999999755
No 153
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=51.97 E-value=28 Score=35.97 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-------hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-------QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-------ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
..|+.+++-.|.=-+ .-.++.++..|++.+|+|+|+.-...+ +|.+++++ ..+|.+|++|| |.
T Consensus 69 gaKk~llvTDkni~~---~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~------~~fDs~vaiGG-GS 138 (465)
T KOG3857|consen 69 GAKKTLLVTDKNIAK---LGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK------KNFDSFVAIGG-GS 138 (465)
T ss_pred CccceEEeeCCChhh---cccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh------cccceEEEEcC-cc
Confidence 568888887754322 223567899999999999987543332 55666653 67999999999 66
Q ss_pred HHHHHHh
Q 037501 124 FNEILNG 130 (438)
Q Consensus 124 v~EVvNG 130 (438)
.++...+
T Consensus 139 a~DtaKa 145 (465)
T KOG3857|consen 139 AHDTAKA 145 (465)
T ss_pred hhhhHHH
Confidence 6666555
No 154
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=51.89 E-value=35 Score=29.66 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=37.9
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
..+..+|++.|+++.....- +++..++.+.+.+ ..+.+|.||..||=|. ..|++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v-~Dd~~~I~~~l~~-~~~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIV-PDDKEAIKEALRE-ALERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEe-CCCHHHHHHHHHH-HHhCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 35888899999876544333 3555555555433 2356999999999663 5566665543
No 155
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.66 E-value=76 Score=29.94 Aligned_cols=62 Identities=8% Similarity=0.021 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCc-hHHHHHHhhhhc
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDG-FFNEILNGFLSS 134 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDG-Tv~EVvNGL~~~ 134 (438)
.+++.++..+++.|+++.+..+....+ ..+..+.+. ..++|+||+..+|. +..+++.-+...
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~---~~~vdgii~~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06305 16 AYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAI---AQKVDAIIIQHGRAEVLKPWVKRALDA 79 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEecCChhhhHHHHHHHHHc
Confidence 445567888889998887765543221 123344432 25799999998875 356777666543
No 156
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.77 E-value=70 Score=29.91 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=42.3
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
|++ |..-+.--..+++.+...+++.|+++.++.++......+..+.+. ..+.|+||+.+.|-+- +++.-+
T Consensus 4 ~i~-~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~---~~~vdgiii~~~~~~~-~~~~~~ 73 (266)
T cd06278 4 VVV-ADLDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLL---QYRVDGVIVTSGTLSS-ELAEEC 73 (266)
T ss_pred EEe-CCCCCchHHHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHH---HcCCCEEEEecCCCCH-HHHHHH
Confidence 444 543333334455668888888998887776654333444444443 3679999999887553 334444
No 157
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.68 E-value=62 Score=30.51 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=43.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH---------hhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS---------TKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~---------~~~~~~~~~d~IV~vGGDGT 123 (438)
|+++|| |.|+- -......|..+|.+++++..+......+++.. +...++.++|.||++-+|..
T Consensus 11 k~vLVI-----GgG~v---a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 11 KRVVIV-----GGGKV---AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CEEEEE-----CCCHH---HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 566665 44432 23333334456777776644333333344322 11235678899999999999
Q ss_pred HHHHHHhhhh
Q 037501 124 FNEILNGFLS 133 (438)
Q Consensus 124 v~EVvNGL~~ 133 (438)
+|+.+-....
T Consensus 83 lN~~i~~~a~ 92 (202)
T PRK06718 83 VNEQVKEDLP 92 (202)
T ss_pred HHHHHHHHHH
Confidence 9999976663
No 158
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=50.61 E-value=2.1e+02 Score=27.96 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=55.5
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC--CChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR--AGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~--~~ha~~~~~~ 103 (438)
+...+......+.+-|.+. .+.+++.+|.... . -+....+.++..++..|+++.....-. ..+...++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~~-~--~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~ 185 (334)
T cd06342 114 VVARDDQQGPAAAKYAVET-----LKAKKVAIIDDKT-A--YGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTK 185 (334)
T ss_pred ccCCcHHHHHHHHHHHHHh-----cCCCEEEEEeCCc-c--hhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHH
Confidence 3344444444444433322 2457888887543 2 233455678888888888775443222 2345555565
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+. ..+.|.|+..|.....-.++..+...
T Consensus 186 i~---~~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (334)
T cd06342 186 IK---AANPDAVFFGGYYPEAGPLVRQMRQL 213 (334)
T ss_pred HH---hcCCCEEEEcCcchhHHHHHHHHHHc
Confidence 54 25678887776555555666666543
No 159
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=50.34 E-value=1.9e+02 Score=28.84 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK 107 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~ 107 (438)
..+.+......+.+..... -.|-=+-|=++|.++ .-....+.+..+.++.|+++-.+.|-+...-.++-..+...
T Consensus 9 Pk~~~~~~~~~~~~~~l~~---~~p~fvsvT~~~~~~--~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~ 83 (281)
T TIGR00677 9 PKTEEGVQNLYERMDRMVA---SGPLFIDITWGAGGT--TAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERA 83 (281)
T ss_pred CCCchHHHHHHHHHHHHhh---CCCCEEEeccCCCCc--chhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHH
Confidence 3344434444444444321 133334444444332 11222333444444569999888887665544555444333
Q ss_pred hcCCCcEEEEEcCCch
Q 037501 108 ELSSYDGVLAVGGDGF 123 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGT 123 (438)
...+.+-|++++||-.
T Consensus 84 ~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 84 YSNGIQNILALRGDPP 99 (281)
T ss_pred HHCCCCEEEEECCCCC
Confidence 3457999999999984
No 160
>PRK07308 flavodoxin; Validated
Probab=50.33 E-value=67 Score=28.18 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=40.2
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~E 126 (438)
+++.|++= |-.|..+++.+.|...|...|+.+++........ . ++..+|.|+++- |+|.+.+
T Consensus 2 ~~~~IvY~--S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~-~---------~l~~~d~vi~g~~t~g~G~~p~ 66 (146)
T PRK07308 2 ALAKIVYA--SMTGNTEEIADIVADKLRELGHDVDVDECTTVDA-S---------DFEDADIAIVATYTYGDGELPD 66 (146)
T ss_pred ceEEEEEE--CCCchHHHHHHHHHHHHHhCCCceEEEecccCCH-h---------HhccCCEEEEEeCccCCCCCCH
Confidence 35777774 4455677888888888888888877665433221 1 235677766654 6786664
No 161
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=49.81 E-value=94 Score=29.37 Aligned_cols=61 Identities=10% Similarity=0.114 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhc---ceeEEEEEeCCCChH---HHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 70 RTWETVAPIFVRA---KVNTKVIVTQRAGQA---FDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 70 ~~~~~v~~~l~~a---gi~~~v~~T~~~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
++++-++..+++. |.++++......++. .+..+++. ..++|+||+.+.|-. +.++++-+..
T Consensus 16 ~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~---~~~vdgiIi~~~~~~~~~~~l~~~~~ 83 (272)
T cd06300 16 QMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLI---AQGVDAIIINPASPTALNPVIEEACE 83 (272)
T ss_pred HHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhhhHHHHHHHHH
Confidence 4455577777777 875554443333333 23444433 358999999998843 4556665544
No 162
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=49.66 E-value=1.2e+02 Score=26.20 Aligned_cols=84 Identities=7% Similarity=0.027 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
..+++.+|. +..+.......++-.+..+...|+++.................... .+...+|+|+| +.|.+...+++
T Consensus 8 G~r~i~~i~-~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~-~~~~~a~~~~~ 85 (160)
T PF13377_consen 8 GHRRIAFIG-GPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIIC-SNDRLALGVLR 85 (160)
T ss_dssp T-SSEEEEE-SSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEE-SSHHHHHHHHH
T ss_pred CCCeEEEEe-cCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEE-cCHHHHHHHHH
Confidence 457777777 3333344444455677888999998765544433322221111110 01115676666 88999999999
Q ss_pred hhhhccc
Q 037501 130 GFLSSRY 136 (438)
Q Consensus 130 GL~~~~~ 136 (438)
.|.....
T Consensus 86 ~l~~~g~ 92 (160)
T PF13377_consen 86 ALRELGI 92 (160)
T ss_dssp HHHHTTS
T ss_pred HHHHcCC
Confidence 9987643
No 163
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=49.51 E-value=91 Score=28.26 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++......|++++++.+.+.|...+...++. +++|+||+=-|
T Consensus 34 ~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~----~~~dgiiINpg 76 (146)
T PRK05395 34 LLEEEAAELGVELEFFQSNHEGELIDRIHEAR----DGADGIIINPG 76 (146)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc----cCCcEEEECch
Confidence 34445556689999999999999888887752 46888885443
No 164
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=49.47 E-value=38 Score=34.99 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=43.0
Q ss_pred CcEEEEEEcCCCCCCCh--hhh-HHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSG--RRT-WETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~--~~~-~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
--.++-|+|=+.|=-.+ .++ ++.|..++..-|- +..|.+.. .....++.+. ..+.|++|++||||
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT---~lgssR~~~~~~~e~~~~~~~~l~---~~gId~LvvIGGDg 105 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGT---FLGSARFPEFKTEEGRKVAAENLK---KLGIDALVVIGGDG 105 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCe---EEeeCCCCCcccHHHHHHHHHHHH---HcCCCEEEEECCCC
Confidence 46788888877774333 222 3457777777763 33333322 2223344443 35789999999999
Q ss_pred hHHHH
Q 037501 123 FFNEI 127 (438)
Q Consensus 123 Tv~EV 127 (438)
|..-.
T Consensus 106 S~~gA 110 (347)
T COG0205 106 SYTGA 110 (347)
T ss_pred hHHHH
Confidence 98644
No 165
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=49.45 E-value=22 Score=34.14 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=34.0
Q ss_pred CCCChhhhHHH--HHHHHHhcceeEEEEEeCCC---------Ch----HH----HHH-------HHhhhhhcCCCcEEEE
Q 037501 64 GKGSGRRTWET--VAPIFVRAKVNTKVIVTQRA---------GQ----AF----DVM-------ASTKNKELSSYDGVLA 117 (438)
Q Consensus 64 G~g~~~~~~~~--v~~~l~~agi~~~v~~T~~~---------~h----a~----~~~-------~~~~~~~~~~~d~IV~ 117 (438)
|-..+.+..|- ...+|+++|+++++.-++.. +. .+ +.. ..+.+.+.+.||+|++
T Consensus 9 g~~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalvi 88 (213)
T cd03133 9 GVYDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIF 88 (213)
T ss_pred cCCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEE
Confidence 44445566664 34678888988887655321 00 00 000 1122223457999999
Q ss_pred EcCCch
Q 037501 118 VGGDGF 123 (438)
Q Consensus 118 vGGDGT 123 (438)
.||.|.
T Consensus 89 PGG~~~ 94 (213)
T cd03133 89 PGGFGA 94 (213)
T ss_pred CCCCch
Confidence 999885
No 166
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=49.23 E-value=64 Score=30.53 Aligned_cols=70 Identities=14% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+++++| |.+.. ........+...|++. |++++...+.. -.+..+. +...|.|++-|| -....+.
T Consensus 30 ~~~~i~~I--ptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~---~~~~~~~-----l~~ad~I~l~GG--~~~~~~~ 96 (212)
T cd03146 30 ARPKVLFV--PTASG-DRDEYTARFYAAFESLRGVEVSHLHLFD---TEDPLDA-----LLEADVIYVGGG--NTFNLLA 96 (212)
T ss_pred CCCeEEEE--CCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccC---cccHHHH-----HhcCCEEEECCc--hHHHHHH
Confidence 44455544 44443 2233445688999999 98877665433 1122222 356788887775 4444555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.|..
T Consensus 97 ~l~~ 100 (212)
T cd03146 97 QWRE 100 (212)
T ss_pred HHHH
Confidence 4433
No 167
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=48.91 E-value=1.5e+02 Score=29.24 Aligned_cols=89 Identities=15% Similarity=0.004 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhc
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKEL 109 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~ 109 (438)
+....+...+++..+- . ..|.=+-|=.||.++.. ....+....+.+..|+++-.+.|-+.....++...+.....
T Consensus 10 ~~~~~~~l~~~~~~l~-~--~~pd~isvT~~~~~~~~--~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~ 84 (272)
T TIGR00676 10 TDEGEENLWETVDRLS-P--LDPDFVSVTYGAGGSTR--DRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRE 84 (272)
T ss_pred CchhHHHHHHHHHHHh-c--CCCCEEEeccCCCCCcH--HHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHH
Confidence 3344455555554432 1 13444555556655422 22333344555567999988888776665555555443334
Q ss_pred CCCcEEEEEcCCch
Q 037501 110 SSYDGVLAVGGDGF 123 (438)
Q Consensus 110 ~~~d~IV~vGGDGT 123 (438)
.+.+-|++++||-.
T Consensus 85 ~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 85 LGIRHILALRGDPP 98 (272)
T ss_pred CCCCEEEEeCCCCC
Confidence 57999999999986
No 168
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=48.78 E-value=27 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=13.3
Q ss_pred hcCCCcEEEEEcCCch
Q 037501 108 ELSSYDGVLAVGGDGF 123 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGT 123 (438)
+.+.||+|++.||=|.
T Consensus 91 ~~~dYDav~iPGG~g~ 106 (231)
T cd03147 91 NPDDYGIFFVAGGHGT 106 (231)
T ss_pred CHhhCcEEEECCCCch
Confidence 3468999999999775
No 169
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=48.60 E-value=7.6 Score=40.65 Aligned_cols=88 Identities=42% Similarity=0.577 Sum_probs=65.0
Q ss_pred ccccceecccccccCCCCCCCCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEE
Q 037501 348 KCERVICRRNCNICNTNSVDMSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLIL 427 (438)
Q Consensus 348 ~~~~~~c~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvl 427 (438)
+...+.|+..|-+|+...-+.. ++-..-..+...-|..-.++|..+-.+..+....+.++..+-.++.-||.+.+.+
T Consensus 393 ~Fl~V~c~aipciC~~~PrGLa---P~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~ 469 (516)
T KOG1115|consen 393 RFLKVLCRAIPCICNSKPRGLA---PSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSL 469 (516)
T ss_pred heeeeeEeeccccccCCCCCcC---CccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEee
Confidence 4457889999999987654431 1111112233456777789998888887777777778777889999999999999
Q ss_pred EcCCCccccCC
Q 037501 428 IKDCPRALYLW 438 (438)
Q Consensus 428 vr~~s~~~~l~ 438 (438)
+++|++.++++
T Consensus 470 ~~d~~~~d~~e 480 (516)
T KOG1115|consen 470 IKDCSRPDYLE 480 (516)
T ss_pred cCCCCCCCcce
Confidence 99999988763
No 170
>PLN02564 6-phosphofructokinase
Probab=48.42 E-value=25 Score=37.92 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=41.5
Q ss_pred cEEEEEEcCCCCCCC--hhhh-HHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 53 KNLLIFIHPMSGKGS--GRRT-WETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 53 k~llvivNP~sG~g~--~~~~-~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+++-|.|=+.|=-. ...+ ++.|..+...-| ++.-|.|.. +..++++.+. .-+.|.++++|||||+.-+
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTsR~~~~~~~iv~~L~---~~~Id~LivIGGDGS~~gA 192 (484)
T PLN02564 120 TRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQ---DRGINQVYIIGGDGTQKGA 192 (484)
T ss_pred eEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCC---ceeccCCCcchHHHHHHHHH---HhCCCEEEEECCchHHHHH
Confidence 467777775555322 1222 345666665544 345555543 3455666554 3578999999999998643
No 171
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=48.28 E-value=39 Score=29.59 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvNG 130 (438)
+++|++=- -.|+++++.+.|...|...++++++.. +.. ++.. . ..++..||.|++.. |+|.+.+-+..
T Consensus 2 ~i~IiY~S--~tGnTe~iA~~ia~~l~~~g~~v~~~~--~~~---~~~~-~-~~~~~~~d~iilgs~t~~~g~~p~~~~~ 72 (140)
T TIGR01754 2 RILLAYLS--LSGNTEEVAFMIQDYLQKDGHEVDILH--RIG---TLAD-A-PLDPENYDLVFLGTWTWERGRTPDEMKD 72 (140)
T ss_pred eEEEEEEC--CCChHHHHHHHHHHHHhhCCeeEEecc--ccc---cccc-C-cCChhhCCEEEEEcCeeCCCcCCHHHHH
Confidence 67788844 445677888899999988888776221 101 0100 0 11345689887777 68887765555
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
++..
T Consensus 73 fl~~ 76 (140)
T TIGR01754 73 FIAE 76 (140)
T ss_pred HHHH
Confidence 5543
No 172
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.26 E-value=1.5e+02 Score=27.09 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=40.9
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
...+++.++-.+.--.+ +..+..+| ++++..+.-+...+....+.++.. +++|+|| | +|++.+.++
T Consensus 75 ~~~~~Iavv~~~~~~~~-----~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~---~G~~viV--G-g~~~~~~A~ 140 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG-----LESIEELL---GVDIKIYPYDSEEEIEAAIKQAKA---EGVDVIV--G-GGVVCRLAR 140 (176)
T ss_dssp CCTSEEEEEEESS-SCC-----HHHHHHHH---T-EEEEEEESSHHHHHHHHHHHHH---TT--EEE--E-SHHHHHHHH
T ss_pred hcCCcEEEEecccccHH-----HHHHHHHh---CCceEEEEECCHHHHHHHHHHHHH---cCCcEEE--C-CHHHHHHHH
Confidence 34467777765444322 45677777 667777777778888888888753 6777666 4 445556554
Q ss_pred h
Q 037501 130 G 130 (438)
Q Consensus 130 G 130 (438)
.
T Consensus 141 ~ 141 (176)
T PF06506_consen 141 K 141 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=48.17 E-value=19 Score=32.86 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.2
Q ss_pred CCCcEEEEEcCCchH
Q 037501 110 SSYDGVLAVGGDGFF 124 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv 124 (438)
..||.|++.||.|+.
T Consensus 75 ~~~D~liv~GG~~~~ 89 (180)
T cd03169 75 DDYDALVIPGGRAPE 89 (180)
T ss_pred hHCCEEEEcCCCChh
Confidence 368999999998753
No 174
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=47.82 E-value=51 Score=34.43 Aligned_cols=69 Identities=9% Similarity=-0.056 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-CCCChHHH
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-QRAGQAFD 99 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~~~~ha~~ 99 (438)
+.++..+|.+.+...-......+.+++.|.|.++|-||... --.+...|...|.++-++-. ...+++..
T Consensus 83 tl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTt-a~nLA~~LA~~G~rVLlIDl~DpQ~nlt~ 152 (387)
T PHA02519 83 TIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSS-AVHTAQWLALQGHRVLLIEGNDPQGTASM 152 (387)
T ss_pred cHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHH-HHHHHHHHHhCCCcEEEEeCCCCCCCccc
Confidence 35667778777754221111223478889999999998532 23567778888998888874 66666543
No 175
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=46.75 E-value=1.1e+02 Score=28.46 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=43.8
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.|++ |.....--..+++.++..++..|+.+.+..+++.. ...+.++.+. ..++|+||+..++....+++.-+..
T Consensus 3 gvv~-~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~~~~~~~~~~~~~ 77 (266)
T cd06282 3 GVVL-PSLANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLL---RQRVDGLILTVADAATSPALDLLDA 77 (266)
T ss_pred EEEe-CCCCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHH---hcCCCEEEEecCCCCchHHHHHHhh
Confidence 3444 44433333455566888888888888877665422 1223444443 2579999998887643455555433
No 176
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=46.72 E-value=50 Score=33.63 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=43.1
Q ss_pred CcEEEEEEcCCCCCCC--hhhh-HHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGS--GRRT-WETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~--~~~~-~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
.-+++-|.|=+.|=-+ -..+ ++.+..++..-|- +.-|.+.. +-..+++.+. ..+.|.++++||||
T Consensus 30 g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~---~~~Id~Li~IGGdg 103 (317)
T cd00763 30 GLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT---FLGSARFPEFKDEEGQAKAIEQLK---KHGIDALVVIGGDG 103 (317)
T ss_pred CCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe---eeccCCCCccCCHHHHHHHHHHHH---HcCCCEEEEECCch
Confidence 3478889887776432 2222 3457777665553 34444422 2234444443 36789999999999
Q ss_pred hHHHHH
Q 037501 123 FFNEIL 128 (438)
Q Consensus 123 Tv~EVv 128 (438)
|+.-+.
T Consensus 104 s~~~a~ 109 (317)
T cd00763 104 SYMGAM 109 (317)
T ss_pred HHHHHH
Confidence 987553
No 177
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=46.64 E-value=25 Score=26.69 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEeecCCChHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNA 43 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~ 43 (438)
+.+.|.+++.++...|++.|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 6789999999999999999875
No 178
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=46.55 E-value=3e+02 Score=27.13 Aligned_cols=77 Identities=8% Similarity=-0.074 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.+++.+|+.... -+...++.++..|++.|+++..... ....+...++.++. ..+.|+|++.|..+.+..++.
T Consensus 135 ~~~v~ii~~~~~---~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~---~~~~d~v~~~~~~~~~~~~~~ 208 (340)
T cd06349 135 FKKVAILSVNTD---WGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLR---DANPDAIILISYYNDGAPIAR 208 (340)
T ss_pred CcEEEEEecCCh---HhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHH---hcCCCEEEEccccchHHHHHH
Confidence 477887775433 2345567788899999887753221 12345566666664 367899988887777788888
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+...
T Consensus 209 ~~~~~ 213 (340)
T cd06349 209 QARAV 213 (340)
T ss_pred HHHHc
Confidence 77655
No 179
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=46.00 E-value=2.2e+02 Score=28.60 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
+|-|+=..|.+...+..+-+..+++..|+++-.+.|-+...-.++...+......+.+-|++++||-
T Consensus 55 fvsVT~~~~~~~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD~ 121 (296)
T PRK09432 55 FVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGDL 121 (296)
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4444433333322333334556667789999889887766655555544333346889999999994
No 180
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=45.98 E-value=78 Score=30.56 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
.+.+.++..+++.|+++.+..++.. ....++.+++. ..++|+||+++.|.. +.+++.-+..
T Consensus 16 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~vdgiii~~~~~~~~~~~l~~l~~ 78 (288)
T cd01538 16 RDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMI---AKGVDVLVIAPVDGEALASAVEKAAD 78 (288)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEecCChhhHHHHHHHHHH
Confidence 3344577788888888877766532 22234444443 358999999998875 4566655543
No 181
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=45.73 E-value=2.9e+02 Score=28.27 Aligned_cols=96 Identities=10% Similarity=0.055 Sum_probs=54.3
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCC-hhhhHHHHHHHHHhcceeEEEEEeCCC--ChHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGS-GRRTWETVAPIFVRAKVNTKVIVTQRA--GQAFDVMA 102 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~-~~~~~~~v~~~l~~agi~~~v~~T~~~--~ha~~~~~ 102 (438)
...++.......++.+ ... ..+++.+|+.-. .-++ .....+.+...++..|+++.+..+... .+..++++
T Consensus 117 ~~p~~~~~~~a~~~ll-~~~-----~W~~vaiiy~~~-~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~ 189 (387)
T cd06386 117 VAPSYVKMGETFSALF-ERF-----HWRSALLVYEDD-KQERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIR 189 (387)
T ss_pred ecCchHHHHHHHHHHH-HhC-----CCeEEEEEEEcC-CCCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHH
Confidence 3344444455544433 222 457888887422 1222 122356788889999988876654332 35667777
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
++.+ .. +.||+++..-.+..++....
T Consensus 190 ~ik~---~~-rvii~~~~~~~~~~ll~~A~ 215 (387)
T cd06386 190 AIQA---SE-RVVIMCAGADTIRSIMLAAH 215 (387)
T ss_pred HHHh---cC-cEEEEecCHHHHHHHHHHHH
Confidence 6642 34 77777776655555555443
No 182
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.70 E-value=61 Score=33.15 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEE-eCCCChHHHHHHHhhhhhcC
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIV-TQRAGQAFDVMASTKNKELS 110 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~-T~~~~ha~~~~~~~~~~~~~ 110 (438)
-...-++.|.+........-.-++|+-||..-.|++.++.. .|+....+.||.+.++. .+...+. ++.+.+. ..
T Consensus 17 fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~-~~~~~l~---~~ 92 (334)
T PLN02285 17 VAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE-DFLSALR---EL 92 (334)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH-HHHHHHH---hh
Confidence 34455555555543221223457777788765666666554 58888888899865432 2333222 3333343 24
Q ss_pred CCcEEEEEc
Q 037501 111 SYDGVLAVG 119 (438)
Q Consensus 111 ~~d~IV~vG 119 (438)
.+|.||++|
T Consensus 93 ~~Dliv~~~ 101 (334)
T PLN02285 93 QPDLCITAA 101 (334)
T ss_pred CCCEEEhhH
Confidence 689998885
No 183
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=45.46 E-value=43 Score=38.21 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=43.7
Q ss_pred cEEEEEEcCCCCCCCh-----hhhHHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 53 KNLLIFIHPMSGKGSG-----RRTWETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 53 k~llvivNP~sG~g~~-----~~~~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
-+++.|.|=+.|=-++ .-.|+.|..++..-| +++-|.+-. .-...++.+. ..+.|.+|++|||
T Consensus 34 ~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GG---T~LGTsR~~~f~~~e~~~~a~~~L~---~~~Id~LvvIGGd 107 (762)
T cd00764 34 AKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGG---TIIGSARCKEFREREGRLQAAYNLI---QRGITNLCVIGGD 107 (762)
T ss_pred CEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCC---CcccCCCCCcccCHHHHHHHHHHHH---HcCCCEEEEeCCc
Confidence 4788888876663222 223677888888776 233343322 1233444443 3678999999999
Q ss_pred chHHHH
Q 037501 122 GFFNEI 127 (438)
Q Consensus 122 GTv~EV 127 (438)
||+.-+
T Consensus 108 gSl~gA 113 (762)
T cd00764 108 GSLTGA 113 (762)
T ss_pred hHHHHH
Confidence 998654
No 184
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=45.44 E-value=43 Score=38.16 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCCCh----hh-hHHHHHHHHHhcceeEEEEEeCCCCh------HHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 53 KNLLIFIHPMSGKGSG----RR-TWETVAPIFVRAKVNTKVIVTQRAGQ------AFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 53 k~llvivNP~sG~g~~----~~-~~~~v~~~l~~agi~~~v~~T~~~~h------a~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
-+++-|.|=+.|=-+. .. .|+.|..++..-| +++-|.+... -..+++.+. ..+.|.+|++|||
T Consensus 31 ~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GG---t~LGtsR~~~~~~~~~~~~~~~~L~---~~~Id~LivIGGd 104 (745)
T TIGR02478 31 CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGG---TIIGTARCKEFRERPGRLKAARNLI---KRGIDNLVVIGGD 104 (745)
T ss_pred CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCC---ceecCCCCCcccCHHHHHHHHHHHH---HhCCCEEEEECCh
Confidence 4799999977764222 22 3567888887766 2344443221 133444443 3578999999999
Q ss_pred chHHHH
Q 037501 122 GFFNEI 127 (438)
Q Consensus 122 GTv~EV 127 (438)
||+.-+
T Consensus 105 gS~~~a 110 (745)
T TIGR02478 105 GSLTGA 110 (745)
T ss_pred hHHHHH
Confidence 998654
No 185
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=45.11 E-value=1.2e+02 Score=31.12 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=48.0
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
...+++-|+++-.+|+++ ..+.++++.+++++|.++-++......-++ +. .....|..|.+|=
T Consensus 230 ~~A~~vGIlvgTl~~q~~-~~~~~~l~~ll~~~gkk~y~i~~~~in~~k-----L~--nf~eiD~fV~~aC 292 (332)
T TIGR00322 230 RKGKKFGVVLSSKGGQGR-LRLAKNLKKNLEEAGKTVLIILLSNVSPAK-----LL--MFDQIDVFVQVAC 292 (332)
T ss_pred hcCCEEEEEEecCccCCC-HHHHHHHHHHHHHcCCcEEEEEeCCCCHHH-----Hh--CCCCcCEEEEecC
Confidence 356889999999999887 577889999999999998888777766542 21 2345787776653
No 186
>PRK14071 6-phosphofructokinase; Provisional
Probab=45.05 E-value=35 Score=35.39 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCCCh----hh-hHHHHHHHHHhcceeEEEEEeCCC--------------ChHHHHHHHhhhhhcCCCcE
Q 037501 54 NLLIFIHPMSGKGSG----RR-TWETVAPIFVRAKVNTKVIVTQRA--------------GQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 54 ~llvivNP~sG~g~~----~~-~~~~v~~~l~~agi~~~v~~T~~~--------------~ha~~~~~~~~~~~~~~~d~ 114 (438)
+++-|.|=+.|=-+. .. .++.|..++..-|- +.-|.+. ....++++.+. ..+.|.
T Consensus 37 ~v~G~~~G~~GL~~~~~~~~~l~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~Id~ 110 (360)
T PRK14071 37 EVIGIRDATQGLMARPPQYIELDLDQVDDLLRMGGT---ILGTTNKGDPFAFPMPDGSLRDRSQEIIDGYH---SLGLDA 110 (360)
T ss_pred EEEEEecChHHHhcCCCCeEECCHHHHhhHHhCCCc---eeccCCCCCccccccccccchHHHHHHHHHHH---HcCCCE
Confidence 688888877763322 11 24567777766553 3334321 12234444443 357899
Q ss_pred EEEEcCCchHHHHHHhhh
Q 037501 115 VLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 115 IV~vGGDGTv~EVvNGL~ 132 (438)
++++|||||+. .++-|.
T Consensus 111 Li~IGGdgS~~-~a~~L~ 127 (360)
T PRK14071 111 LIGIGGDGSLA-ILRRLA 127 (360)
T ss_pred EEEECChhHHH-HHHHHH
Confidence 99999999985 344454
No 187
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=45.05 E-value=67 Score=29.69 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+|++||=|=-+ -.+ .|...|++.|++++++.... .+. . +++.+|+||+.||-|.
T Consensus 2 ~~iliid~~ds------f~~-~i~~~l~~~g~~~~v~~~~~-~~~----~-----~l~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDS------FTF-NLVDLIRKLGVPMQVVNVED-LDL----D-----EVENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCc------hHH-HHHHHHHHcCCcEEEEECCc-cCh----h-----HhccCCEEEECCCCCC
Confidence 57788777111 122 38889999999888765432 111 1 2357999999999994
No 188
>PRK03202 6-phosphofructokinase; Provisional
Probab=44.91 E-value=32 Score=35.08 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCCCCCh--hhh-HHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSG--RRT-WETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~--~~~-~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
-+++-|.|=+-|=-+. ..+ ++.|..+....|- +.-|.+.. .-..+++.+. ..+.|.+|++|||||
T Consensus 32 ~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs---~LgtsR~~~~~~~~~~~~~~~~l~---~~~Id~Li~IGGd~s 105 (320)
T PRK03202 32 LEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGT---ILGSARFPEFKDEEGRAKAIENLK---KLGIDALVVIGGDGS 105 (320)
T ss_pred CeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCc---ccccCCCCCcCCHHHHHHHHHHHH---HcCCCEEEEeCChHH
Confidence 4788888876663322 222 4567777776663 23344322 2334445443 357899999999999
Q ss_pred HHHHHHhhh
Q 037501 124 FNEILNGFL 132 (438)
Q Consensus 124 v~EVvNGL~ 132 (438)
+.-+. -|.
T Consensus 106 ~~~a~-~L~ 113 (320)
T PRK03202 106 YMGAK-RLT 113 (320)
T ss_pred HHHHH-HHH
Confidence 97643 354
No 189
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=44.74 E-value=2e+02 Score=26.56 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh-hcC
Q 037501 32 PTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK-ELS 110 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~-~~~ 110 (438)
++...|.+.+++.- ..++++|+=|-. |... ..-.++++.+-+.-|+.+-.+.+..++-..++.+-+... ...
T Consensus 62 ~~~~~~~~~l~~~~-----~~~~v~IvSNsa-Gs~~-d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 62 PEYAEWLNELKKQF-----GKDRVLIVSNSA-GSSD-DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVT 134 (168)
T ss_pred HHHHHHHHHHHHHC-----CCCeEEEEECCC-Cccc-CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCC
Confidence 57888988887542 345788888854 4443 223455666666667776666677887766766654310 012
Q ss_pred CCcEEEEEcCCchHHHHHHh
Q 037501 111 SYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 111 ~~d~IV~vGGDGTv~EVvNG 130 (438)
..+-+++| ||=.+..|+-|
T Consensus 135 ~p~eiavI-GDrl~TDVl~g 153 (168)
T PF09419_consen 135 SPSEIAVI-GDRLFTDVLMG 153 (168)
T ss_pred CchhEEEE-cchHHHHHHHh
Confidence 34555555 69999888855
No 190
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.58 E-value=3e+02 Score=27.71 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=46.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..|++.+|.. ... -+....+.++..|++.|+++.....- ...+....+.++. ..+.|.|++.+-....-.++
T Consensus 139 ~~~kvaiv~~-~~~--~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~---~~~pd~V~~~~~~~~~~~~~ 212 (351)
T cd06334 139 KGKKIALVYH-DSP--FGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIR---RSGPDYVILWGWGVMNPVAI 212 (351)
T ss_pred CCCeEEEEeC-CCc--cchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHH---HcCCCEEEEecccchHHHHH
Confidence 3578888765 222 22344566788899999876433221 1234445555553 35789988876666666677
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
..+...
T Consensus 213 ~~~~~~ 218 (351)
T cd06334 213 KEAKRV 218 (351)
T ss_pred HHHHHc
Confidence 766543
No 191
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=44.33 E-value=2.9e+02 Score=27.02 Aligned_cols=78 Identities=8% Similarity=-0.004 Sum_probs=44.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++ |.-...--.++++.+...+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.+-.-.+.+.
T Consensus 60 ~~~~Igvv~-~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~~ 135 (328)
T PRK11303 60 RTRSIGLII-PDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLL---QRQVDALIVSTSLPPEHPFYQ 135 (328)
T ss_pred CCceEEEEe-CCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEcCCCCCChHHHH
Confidence 345566666 43222222344456777888889888776654322 2233444443 257999999887543345555
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-+.
T Consensus 136 ~l~ 138 (328)
T PRK11303 136 RLQ 138 (328)
T ss_pred HHH
Confidence 443
No 192
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=44.09 E-value=57 Score=33.45 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=50.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCC--ChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRA--GQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~--~ha 97 (438)
..+.|.....+....+ +. .||++|+..+...+ ...+++|...|+.. .+.++ +...+ ...
T Consensus 5 ~~I~~G~g~~~~l~~~-------~~-----~~r~lvVtd~~~~~---~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v 67 (355)
T TIGR03405 5 VRIHFGAGSLALAPQL-------LH-----GRRVVVVTFPEARA---LGLARRLEALLGGR--LAALIDDVAPNPDVAQL 67 (355)
T ss_pred CeEEECCCHHHHHHHH-------hC-----CCeEEEEECcchhh---cchHHHHHHHhccC--cEEEeCCCCCCcCHHHH
Confidence 4577887666555443 21 27889888764321 24567788888644 33333 12222 223
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.+.++.+.+. ..+.|.||++|| |++..+.-.+
T Consensus 68 ~~~~~~~~~~-~~~~D~IIaiGG-GSviD~aK~i 99 (355)
T TIGR03405 68 DGLYARLWGD-EGACDLVIALGG-GSVIDTAKVL 99 (355)
T ss_pred HHHHHHHHhc-CCCCCEEEEeCC-ccHHHHHHHH
Confidence 3333333221 134899999998 6666666543
No 193
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=43.80 E-value=22 Score=37.42 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.8
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
..+++.+. ..+.|.+|++|||||+.-+
T Consensus 102 ~~~~~~L~---~~~Id~Li~IGGdgS~~~a 128 (403)
T PRK06555 102 KVAAERLA---ADGVDILHTIGGDDTNTTA 128 (403)
T ss_pred HHHHHHHH---HcCCCEEEEECChhHHHHH
Confidence 34455553 3578999999999998654
No 194
>PRK05637 anthranilate synthase component II; Provisional
Probab=43.17 E-value=1.2e+02 Score=28.68 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=39.1
Q ss_pred cEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
+++++|=| +.+ |. .+...|++.|..++++..+. ...++. ...+|+||+-||-|.+.+.
T Consensus 2 ~~il~iD~---~ds-----f~~nl~~~l~~~g~~~~v~~~~~--~~~~l~-------~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 2 THVVLIDN---HDS-----FVYNLVDAFAVAGYKCTVFRNTV--PVEEIL-------AANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CEEEEEEC---CcC-----HHHHHHHHHHHCCCcEEEEeCCC--CHHHHH-------hcCCCEEEEeCCCCCHHHh
Confidence 56677666 222 22 47788888898887775542 223332 1468999999999999886
No 195
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=43.17 E-value=1.3e+02 Score=29.14 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=39.8
Q ss_pred cEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
|++.+| |.++.-+.-+.|. +++..|+..|+.+.-.. -...+..++...+ .+.| +|.|||=-|++-.
T Consensus 33 ~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~-l~~~~~~~Ie~~l-----~~~d-~IyVgGGNTF~LL 99 (224)
T COG3340 33 KTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELH-LSKPPLAAIENKL-----MKAD-IIYVGGGNTFNLL 99 (224)
T ss_pred ceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeee-ccCCCHHHHHHhh-----hhcc-EEEECCchHHHHH
Confidence 444444 8888777666665 79999999998775322 1223333444333 3455 5556666787644
No 196
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=43.17 E-value=2.3e+02 Score=28.19 Aligned_cols=96 Identities=7% Similarity=-0.015 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC--CChHHHHHHHhh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR--AGQAFDVMASTK 105 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~--~~ha~~~~~~~~ 105 (438)
..+........+.+.+.. ..+++.+|+. ... -+....+.++..|+++|+++...+.-. ..+-..++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~-----g~~~v~ii~~-~~~--~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~ 196 (362)
T cd06343 125 PSYQDEARIYAKYLVEEK-----PNAKIAVLYQ-NDD--FGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLK 196 (362)
T ss_pred CChHHHHHHHHHHHHHhC-----CCceEEEEEe-ccH--HHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHH
Confidence 344444555544443321 3577777763 232 233455678888999998764333222 223344445543
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
..+.|+|++.+..+..-.++..+...
T Consensus 197 ---~~~~d~v~~~~~~~~~~~~~~~~~~~ 222 (362)
T cd06343 197 ---AAGADVVVLATTPKFAAQAIRKAAEL 222 (362)
T ss_pred ---hcCCCEEEEEcCcHHHHHHHHHHHHc
Confidence 36789888877766666677666543
No 197
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=43.16 E-value=23 Score=37.74 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=41.1
Q ss_pred cEEEEEEcCCCCC-----CChhhh-HHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 53 KNLLIFIHPMSGK-----GSGRRT-WETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 53 k~llvivNP~sG~-----g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
.+++-|.|=+-|= ++-..+ ++.|..+...-| ++.-|.|.. +..++++.+. ..+.|.++++|||||+.
T Consensus 113 ~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG---TiLGTsR~~~~~~~iv~~L~---~~~I~~L~vIGGdgT~~ 186 (443)
T PRK06830 113 RRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG---TILGSSRGPQDPEEIVDTLE---RMNINILFVIGGDGTLR 186 (443)
T ss_pred eEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC---ccccCCCCchhHHHHHHHHH---HcCCCEEEEeCCchHHH
Confidence 5677777755552 222222 345666665544 344555533 3445555553 36789999999999986
Q ss_pred HH
Q 037501 126 EI 127 (438)
Q Consensus 126 EV 127 (438)
-.
T Consensus 187 gA 188 (443)
T PRK06830 187 GA 188 (443)
T ss_pred HH
Confidence 44
No 198
>PRK07053 glutamine amidotransferase; Provisional
Probab=43.06 E-value=33 Score=33.23 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=37.4
Q ss_pred CcEEEEEEc-CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 52 PKNLLIFIH-PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 52 pk~llvivN-P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
+|+++||-| |..+-| .+...|+..|++++++.... ++. . ..++..||+||+.||-..+
T Consensus 2 m~~ilviqh~~~e~~g-------~i~~~L~~~g~~~~v~~~~~-~~~---~----~~~~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 2 MKTAVAIRHVAFEDLG-------SFEQVLGARGYRVRYVDVGV-DDL---E----TLDALEPDLLVVLGGPIGV 60 (234)
T ss_pred CceEEEEECCCCCCCh-------HHHHHHHHCCCeEEEEecCC-Ccc---C----CCCccCCCEEEECCCCCCC
Confidence 578999988 333333 36777888898887765432 111 0 1134679999999986554
No 199
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=43.01 E-value=1.6e+02 Score=28.96 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++ |.....--..+.+.+...+++.|+.+.+..+.... ...++.+.+. ..++|+||+++.+....+.+.
T Consensus 63 ~~~~Igvv~-~~~~~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~~ 138 (342)
T PRK10014 63 QSGVIGLIV-RDLSAPFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLL---NQGVDGVVIAGAAGSSDDLRE 138 (342)
T ss_pred CCCEEEEEe-CCCccchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEeCCCCCcHHHHH
Confidence 445667766 33222222334445777788888776655554321 2223444443 357999999988765445555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-+..
T Consensus 139 ~l~~ 142 (342)
T PRK10014 139 MAEE 142 (342)
T ss_pred HHhh
Confidence 5543
No 200
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=42.86 E-value=2.7e+02 Score=27.11 Aligned_cols=69 Identities=10% Similarity=0.033 Sum_probs=40.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+.+.+.|++ |.....--..+++.+...+++.|+++.+..+.... ...+..+.+. ..++|+||+.+.+..
T Consensus 55 ~~~~Igvi~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 55 QTRTIGMLI-TASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLM---QKRVDGLLLLCTETH 124 (327)
T ss_pred CCCeEEEEe-CCCCCCcHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCcc
Confidence 445666666 43333333445566888888888877665554321 1223333332 257999999987754
No 201
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=42.85 E-value=92 Score=32.04 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHhhhcc-CCCcEEEEEEcCCCCCCC--hhhhHHHHHHHHHh---cceeEEEEEeCCCChHHHHHHHh
Q 037501 31 LPTCEMWVNRVNAFLNMEV-GRPKNLLIFIHPMSGKGS--GRRTWETVAPIFVR---AKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~-~rpk~llvivNP~sG~g~--~~~~~~~v~~~l~~---agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
.+...+-++.+.+.+.... .+||=.+.=+||++|.+- +.+--+.|.|.+++ .|+++. .+--|-.+-...
T Consensus 181 ~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAI~~~~~~g~~v~-----GP~paDt~F~~~ 255 (332)
T PRK03743 181 KERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGEHGLFGDEEVDEIIPAVEAAQEMGINVE-----GPVPADSVFHLA 255 (332)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCccc-----CCCCchhhcccc
Confidence 3334455555555554222 345544444899999753 22333345666554 455442 333333332222
Q ss_pred hhhhcCCCcEEEEE
Q 037501 105 KNKELSSYDGVLAV 118 (438)
Q Consensus 105 ~~~~~~~~d~IV~v 118 (438)
....||+||++
T Consensus 256 ---~~~~~D~vvaM 266 (332)
T PRK03743 256 ---LQGRYDAVLSL 266 (332)
T ss_pred ---cccCCCEEEEc
Confidence 23679999975
No 202
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=42.60 E-value=1.7e+02 Score=28.91 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=40.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
|.-+-|=.||.++.. .........++...|+++-.+.|-+...-.++...+.....-+.+.|+++.||-
T Consensus 41 pd~vsVTd~~~~~~~--~~s~~~a~~l~~~~g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~ 109 (287)
T PF02219_consen 41 PDFVSVTDNPGGSSR--MMSLLAAAKLLKETGIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDP 109 (287)
T ss_dssp -SEEEE---GCGTTH--HHHHHHHHHHHHHTT--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-T
T ss_pred CCEEEeecCCCCccc--CCcHHHHHHHHHHhCCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCC
Confidence 555666678777432 223334556667789999999998876666666655444456889999999995
No 203
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=42.54 E-value=2.2e+02 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=17.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.+-+++++..||=+|.-...-++.
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~ 114 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQ 114 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHH
Confidence 456899999999777665555443
No 204
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=42.28 E-value=81 Score=28.89 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=44.9
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCcE-EEEEcCCchHHHHHHhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYDG-VLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d~-IV~vGGDGTv~EVvNGL~ 132 (438)
|...-..+.+++...|+..|+++++.+.. .+.+..++++++.+ .+.+. |.+.|+.+-+--++.++.
T Consensus 6 GS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~---~g~~viIa~AG~aa~Lpgvva~~t 75 (156)
T TIGR01162 6 GSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEE---RGIKVIIAGAGGAAHLPGMVAALT 75 (156)
T ss_pred CcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHH---CCCeEEEEeCCccchhHHHHHhcc
Confidence 44444556678889999999999887754 35566677776542 45665 555677777777776664
No 205
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=41.96 E-value=38 Score=31.21 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=35.7
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-------HHHHH--HHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-------AFDVM--ASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-------a~~~~--~~~~~~~~~~~d~IV~vGGDG 122 (438)
.||++|++.|..= ... +-....+|+++|+++++...+..+. ...+. ..+.+...+.||.|++.||.+
T Consensus 2 ~~~~~il~~~g~~---~~e-~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~ 77 (196)
T PRK11574 2 SASALVCLAPGSE---ETE-AVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIK 77 (196)
T ss_pred CceEEEEeCCCcc---hhh-HhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCc
Confidence 4788999876441 111 2235567888888777653321100 00000 011111124699999999975
Q ss_pred h
Q 037501 123 F 123 (438)
Q Consensus 123 T 123 (438)
.
T Consensus 78 ~ 78 (196)
T PRK11574 78 G 78 (196)
T ss_pred h
Confidence 4
No 206
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=41.93 E-value=2.3e+02 Score=27.73 Aligned_cols=77 Identities=12% Similarity=0.007 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.|++.++.+..+ -+....+.++..|+++|+++....+ ....+...++.++. ..+.|.|++++...-.-.+++
T Consensus 134 ~~~v~~l~~~~~---~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~---~~~pd~v~~~~~~~~~~~~~~ 207 (336)
T cd06360 134 YKKVVTVAWDYA---FGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIP---DDVPDAVFVFFAGGDAIKFVK 207 (336)
T ss_pred CCeEEEEeccch---hhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHH---hcCCCEEEEecccccHHHHHH
Confidence 577888875333 2334456688889999987643322 22345555566654 357898887765544555666
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+...
T Consensus 208 ~~~~~ 212 (336)
T cd06360 208 QYDAA 212 (336)
T ss_pred HHHHc
Confidence 66443
No 207
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=41.83 E-value=40 Score=30.91 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+...|++.|++++++.-.... .++ . ++..+|+||+.||.|+..+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~--~~~-~-----~~~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 12 YNLVQYLRELGAEVVVVRNDEIT--LEE-L-----ELLNPDAIVISPGPGHPED 57 (184)
T ss_pred HHHHHHHHHcCCceEEEeCCCCC--HHH-H-----hhcCCCEEEECCCCCCccc
Confidence 35778888899988776553322 111 1 2357999999999998754
No 208
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=41.75 E-value=3.4e+02 Score=26.44 Aligned_cols=97 Identities=9% Similarity=0.095 Sum_probs=54.9
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~ 103 (438)
+...+.+.+...++.+.+. ..+++.+|.... . .+....+.++..+++.|+++.... .....+....+.+
T Consensus 116 ~~~~~~~~~~~~~~~l~~~------g~~~v~~l~~~~-~--~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~ 186 (336)
T cd06326 116 VRASYADEIAAIVRHLVTL------GLKRIAVFYQDD-A--FGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQ 186 (336)
T ss_pred eCCChHHHHHHHHHHHHHh------CCceEEEEEecC-c--chHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHH
Confidence 3444555555555554432 357887775432 2 334455668888888887653322 2122455566666
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.+ .+.|+|++.+-+...-.++..+...
T Consensus 187 l~~---~~~dav~~~~~~~~a~~~i~~~~~~ 214 (336)
T cd06326 187 LAA---ARPQAVIMVGAYKAAAAFIRALRKA 214 (336)
T ss_pred HHh---cCCCEEEEEcCcHHHHHHHHHHHhc
Confidence 643 3578777666434466777777654
No 209
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.68 E-value=1.1e+02 Score=29.82 Aligned_cols=57 Identities=12% Similarity=-0.007 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcceeEEEEEeC-CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 72 WETVAPIFVRAKVNTKVIVTQ-RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++-++.+-++.++++++++.. ......+.++++.+ ++||.||+.|. -+.+.+.-...
T Consensus 20 ~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~---~g~dlIi~~g~--~~~~~~~~vA~ 77 (258)
T cd06353 20 DEGRKAAEKALGVEVTYVENVPEGADAERVLRELAA---QGYDLIFGTSF--GFMDAALKVAK 77 (258)
T ss_pred HHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHH---cCCCEEEECch--hhhHHHHHHHH
Confidence 444555555567888777766 44555666666643 67999888443 24444444443
No 210
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.65 E-value=1.3e+02 Score=28.03 Aligned_cols=73 Identities=5% Similarity=0.011 Sum_probs=42.7
Q ss_pred EEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 58 FIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 58 ivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++.|.....--..+++.++..+++.|+++.+..+.. .....++.+.+. ..++|+|++++.+....++++-+..
T Consensus 4 vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~vdgiii~~~~~~~~~~~~~~~~ 77 (268)
T cd06289 4 LVINDLTNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTML---EHGVAGIILCPAAGTSPDLLKRLAE 77 (268)
T ss_pred EEecCCCcchHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHH---HcCCCEEEEeCCCCccHHHHHHHHh
Confidence 334655444444445567788888888776554432 222234444443 3678999999877654456665543
No 211
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.56 E-value=30 Score=28.48 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+.|.|.+.|+++.+.|++.|+..
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 46899999999999999999875
No 212
>PLN02884 6-phosphofructokinase
Probab=41.55 E-value=25 Score=37.19 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCCCCCChh--hh---HHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 52 PKNLLIFIHPMSGKGSGR--RT---WETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~--~~---~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
-++++-|.|=+.|=-+.. .+ ++.|..++..-| ++.-|.+.. ...++++.+. ..+.|.+|++|||||+.
T Consensus 84 ~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GG---t~LGtsR~~~~~~~i~~~L~---~~~Id~LivIGGdgS~~ 157 (411)
T PLN02884 84 VKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGG---SLLGVSRGGAKTSDIVDSIE---ARGINMLFVLGGNGTHA 157 (411)
T ss_pred CcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCC---ceeccCCCCccHHHHHHHHH---HcCCCEEEEECCchHHH
Confidence 346777777666633222 11 455777666555 334444432 3445555553 36789999999999986
Q ss_pred HH
Q 037501 126 EI 127 (438)
Q Consensus 126 EV 127 (438)
-+
T Consensus 158 ~a 159 (411)
T PLN02884 158 GA 159 (411)
T ss_pred HH
Confidence 43
No 213
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=41.51 E-value=28 Score=28.86 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
+.+.|.+.++++.+.|++.|++..
T Consensus 75 rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 75 RGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CEEEEEcCCHHHHHHHHHHhhhhh
Confidence 568999999999999999998764
No 214
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.50 E-value=41 Score=26.79 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=27.6
Q ss_pred HHHHHHHHhcceeEEEEEeC-CCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 73 ETVAPIFVRAKVNTKVIVTQ-RAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
.++...|+.+|+.+++.... ..+.-... .+..++..++++|.+
T Consensus 21 ~~la~~Lr~~g~~v~~d~~~~~l~k~i~~------a~~~g~~~~iiiG~~ 64 (94)
T cd00861 21 EKLYAELQAAGVDVLLDDRNERPGVKFAD------ADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHCCCEEEEECCCCCcccchhH------HHhcCCCEEEEECCc
Confidence 36788888899988765432 22222222 234689999999954
No 215
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=41.41 E-value=1.3e+02 Score=28.13 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
..+++.++..+++.|+++.+..+.......+.+.++.. ...+|+||+.+.+..
T Consensus 19 ~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~vdgiii~~~~~~ 71 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVE--SGLVDGVIISRTRPD 71 (268)
T ss_pred HHHHHHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHH--cCCCCEEEEecCCCC
Confidence 34556688888899988877766544333333444321 246899999887643
No 216
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=41.29 E-value=79 Score=29.26 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC--CchHHHHHHhh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG--DGFFNEILNGF 131 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG--DGTv~EVvNGL 131 (438)
|.||++--.- |+.+++.+.+..-|.+.|+++++.-. |+ +. + .++++||.||+.-- -|=+|+.++.+
T Consensus 2 k~LIlYstr~--GqT~kIA~~iA~~L~e~g~qvdi~dl----~~--~~-~---~~l~~ydavVIgAsI~~~h~~~~~~~F 69 (175)
T COG4635 2 KTLILYSTRD--GQTRKIAEYIASHLRESGIQVDIQDL----HA--VE-E---PALEDYDAVVIGASIRYGHFHEAVQSF 69 (175)
T ss_pred ceEEEEecCC--CcHHHHHHHHHHHhhhcCCeeeeeeh----hh--hh-c---cChhhCceEEEecchhhhhhHHHHHHH
Confidence 5677776444 56778999999999999999987632 21 11 1 24688998886543 46788999888
Q ss_pred hhc
Q 037501 132 LSS 134 (438)
Q Consensus 132 ~~~ 134 (438)
+.+
T Consensus 70 v~k 72 (175)
T COG4635 70 VKK 72 (175)
T ss_pred HHH
Confidence 775
No 217
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=41.20 E-value=1.1e+02 Score=31.73 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=44.7
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS 103 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~ 103 (438)
+.|.....+. |.+-+ ++.+|+||.+-- |+-+-.-+|++|...|+ ++++--+---.++-..+.+.+
T Consensus 12 i~FGkg~i~~-------l~~ei----~~~~kVLi~YGG--GSIKrnGvydqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~k 76 (384)
T COG1979 12 ILFGKGQIAE-------LREEI----PKDAKVLIVYGG--GSIKKNGVYDQVVEALK--GIEVIEFGGVEPNPRLETLMK 76 (384)
T ss_pred EEecCchHHH-------HHhhc----cccCeEEEEecC--ccccccchHHHHHHHhc--CceEEEecCCCCCchHHHHHH
Confidence 6677765533 22233 344889999852 32233346999999997 554322211123332222222
Q ss_pred hhhh-hcCCCcEEEEEcC
Q 037501 104 TKNK-ELSSYDGVLAVGG 120 (438)
Q Consensus 104 ~~~~-~~~~~d~IV~vGG 120 (438)
+.+. -.++.|.|++|||
T Consensus 77 aV~i~kee~idflLAVGG 94 (384)
T COG1979 77 AVEICKEENIDFLLAVGG 94 (384)
T ss_pred HHHHHHHcCceEEEEecC
Confidence 2111 1267999999999
No 218
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=41.08 E-value=1.4e+02 Score=29.45 Aligned_cols=18 Identities=17% Similarity=0.027 Sum_probs=15.9
Q ss_pred CCCcEEEEEcCCchHHHHH
Q 037501 110 SSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVv 128 (438)
...|.+|..|| +|+.|++
T Consensus 240 ~~aDl~Is~~G-~T~~E~~ 257 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERC 257 (279)
T ss_pred HHCCEEEECCc-hHHHHHH
Confidence 45799999999 9999987
No 219
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=41.06 E-value=1.2e+02 Score=29.43 Aligned_cols=77 Identities=6% Similarity=-0.054 Sum_probs=43.9
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCC-chHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGD-GFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGD-GTv~EVvN 129 (438)
.+.+.+++ |.-...--.++.+.++..+++.|+++.+..+.. .....++.+.+. ..++|+|++.+.| ..+++.+.
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~---~~~~dgiii~~~~~~~~~~~l~ 101 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT---VRGTKILLINPTDSDAVGNAVK 101 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHH---HcCCCEEEEcCCChHHHHHHHH
Confidence 34555555 654433334555668888899998887765542 222233344432 2578999887765 33445555
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-+.
T Consensus 102 ~~~ 104 (295)
T PRK10653 102 MAN 104 (295)
T ss_pred HHH
Confidence 443
No 220
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=40.86 E-value=1.2e+02 Score=28.53 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=46.9
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhhc
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLSS 134 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~~ 134 (438)
.|+.|..+..--..+++-++...++.++++.+.... ..+..+..+.+...-..++|+||+..-|.+ +.++++-+...
T Consensus 2 ~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~-~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 2 GVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDA-QNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEES-TTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCC-CCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence 355666654422233445778888888888776233 333334334443333468999999988874 56777776554
No 221
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=40.78 E-value=46 Score=33.68 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCC--CChhhh-HHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGK--GSGRRT-WETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~--g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
-+++-|.|=+.|= ++-..+ ++.+..++..-|- +.-|.+.. +-..+++.+. ..+.|.+|++|||||
T Consensus 30 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~---~~~Id~Li~IGGdgs 103 (301)
T TIGR02482 30 FEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT---ILGTARCPEFKTEEGRQKAVENLK---KLGIEGLVVIGGDGS 103 (301)
T ss_pred CEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc---eeccCCCCccCCHHHHHHHHHHHH---HcCCCEEEEeCCchH
Confidence 3788888877663 222222 4457777666553 33444422 2233455543 357899999999999
Q ss_pred HHHH
Q 037501 124 FNEI 127 (438)
Q Consensus 124 v~EV 127 (438)
+.-+
T Consensus 104 ~~~a 107 (301)
T TIGR02482 104 YTGA 107 (301)
T ss_pred HHHH
Confidence 8654
No 222
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.48 E-value=37 Score=29.46 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+++.|.+.+.++.+.|+++|+.....
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAA 113 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999988643
No 223
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=40.32 E-value=40 Score=28.59 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=23.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+++++.+++.++=.+|++.|.+++..
T Consensus 75 kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 75 KSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999864
No 224
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=40.15 E-value=84 Score=28.27 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++......|++++++.|.+.+...+...++. +++|+||+=-|
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~----~~~dgiIINpg 74 (140)
T cd00466 32 LLRELAAELGVEVEFFQSNHEGELIDWIHEAR----DGADGIIINPG 74 (140)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh----ccCcEEEEcch
Confidence 45555556689999999999999888887753 46888886544
No 225
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=40.08 E-value=4.3e+02 Score=27.16 Aligned_cols=95 Identities=6% Similarity=-0.012 Sum_probs=52.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-----CChHHHHH
Q 037501 27 GHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-----AGQAFDVM 101 (438)
Q Consensus 27 ~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-----~~ha~~~~ 101 (438)
..++.......++.+.. -+.|++.+|+- ... -+....+.++..|++.|+++...++-. ..+...++
T Consensus 157 ~~~~~~~~~al~~~l~~------~~~k~vaii~~-~~~--~g~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l 227 (410)
T cd06363 157 VPSDKDQIEAMVQLLQE------FGWNWVAFLGS-DDE--YGRDGLQLFSELIANTGICIAYQGLIPLDTDPETDYQQIL 227 (410)
T ss_pred cCCcHHHHHHHHHHHHH------CCCcEEEEEEe-CCh--hHHHHHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHH
Confidence 34555555555444422 24577777762 222 234456678888999998765433321 22344444
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.++. ..+.|+||+++.-...-.++..+..
T Consensus 228 ~~i~---~~~~dvIil~~~~~~~~~il~qa~~ 256 (410)
T cd06363 228 KQIN---QTKVNVIVVFASRQPAEAFFNSVIQ 256 (410)
T ss_pred HHHh---cCCCeEEEEEcChHHHHHHHHHHHh
Confidence 4443 3567888776655555556655544
No 226
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=40.08 E-value=1.1e+02 Score=28.89 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=42.8
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH---HHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA---FDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
+.||+...+.. --..+.+.+...+++.|+++.+..+...++. .++.+.+. ..+.|+||+.+.+.. +.+.+..
T Consensus 2 igvi~~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~~~~ 77 (275)
T cd06320 2 YGVVLKTLSNE-FWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMI---NKGYKGLLFSPISDVNLVPAVER 77 (275)
T ss_pred eeEEEecCCCH-HHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHH---HhCCCEEEECCCChHHhHHHHHH
Confidence 45666433211 1123444577888888888777655433322 23344443 257899998887654 5666666
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 78 ~~~ 80 (275)
T cd06320 78 AKK 80 (275)
T ss_pred HHH
Confidence 543
No 227
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=39.98 E-value=62 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=32.6
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+...|++.|.+++++.... ....++. ...+|+||+.||.|..++.
T Consensus 14 nl~~~l~~~~~~~~v~~~~~-~~~~~~~-------~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 14 NLYQYFCELGTEVMVKRNDE-LQLTDIE-------QLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred HHHHHHHHCCCcEEEEeCCC-CCHHHHH-------hcCCCeEEEcCCCCChHhC
Confidence 47778888898888776442 2343431 1368999999999999775
No 228
>PRK14072 6-phosphofructokinase; Provisional
Probab=39.98 E-value=25 Score=37.21 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=19.2
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
..+++.+. .-+.|++|++|||||+.-+
T Consensus 93 ~~~~~~l~---~~~Id~LivIGGdgS~~~a 119 (416)
T PRK14072 93 ERLLEVFK---AHDIGYFFYNGGNDSMDTA 119 (416)
T ss_pred HHHHHHHH---HcCCCEEEEECChHHHHHH
Confidence 34444443 3578999999999998644
No 229
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.86 E-value=1.7e+02 Score=27.64 Aligned_cols=71 Identities=7% Similarity=-0.017 Sum_probs=43.0
Q ss_pred cCCC-CCCChhhhHHHHHHHHHhcceeEEEEEeCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 60 HPMS-GKGSGRRTWETVAPIFVRAKVNTKVIVTQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 60 NP~s-G~g~~~~~~~~v~~~l~~agi~~~v~~T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
-|.. ...--.++.+.++..+++.|+.+.++.++. .....+..+.+. ..+.|+||+++.+.+ +.+.+.-+..
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~~~~~l~~~~~ 80 (271)
T cd06312 6 THGPAGDPFWTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAI---AAKPDGIVVTIPDPDALDPAIKRAVA 80 (271)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHH---HhCCCEEEEeCCChHHhHHHHHHHHH
Confidence 3543 333333444567788888898888777765 222334444443 257999999998764 4455655543
No 230
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=39.82 E-value=2e+02 Score=26.10 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhhcc-CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE
Q 037501 36 MWVNRVNAFLNMEV-GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 36 ~w~~~l~~~~~~~~-~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~ 114 (438)
...+.+.+.+.... .+| -+++++=..++.+.....+.|...|++.|+ +++..+ .....|.++.+ .+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~p--~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~--~~v~~~-~~s~~eqv~~~-----~~a~v 155 (206)
T PF04577_consen 86 ALRDRIRRKLNLPPPKRP--RILYISRRKSGSRRILNEDELLEILKKYGF--EVVDPE-DLSFEEQVKLF-----ASAKV 155 (206)
T ss_pred HHHHHHHHHhCCcccCCC--eEEEEecCCCCCCcCcCHHHHHHHHhhCCe--EEEeCC-CCCHHHHHHHh-----cCCCE
Confidence 45566666655443 234 555676633333333334568888887774 445444 34566666544 57899
Q ss_pred EEEEcCCchHHH
Q 037501 115 VLAVGGDGFFNE 126 (438)
Q Consensus 115 IV~vGGDGTv~E 126 (438)
||.+-|-|..|-
T Consensus 156 iig~hGs~l~n~ 167 (206)
T PF04577_consen 156 IIGPHGSALTNL 167 (206)
T ss_pred EEecCchHhhee
Confidence 999999886543
No 231
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=39.79 E-value=28 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+.+.|.+.+.++++.|+..|+++
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHhC
Confidence 67889999999999999999763
No 232
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.75 E-value=1.4e+02 Score=28.00 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=41.8
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
|++ |.....--..+++.++..+++.|+++.+..+..... -.++.+.+. ..++|+||++..|-. .+.+.-+
T Consensus 4 vi~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~~dgiii~~~~~~-~~~~~~~ 74 (270)
T cd06296 4 LVF-PDLDSPWASEVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLS---ARRTDGVILVTPELT-SAQRAAL 74 (270)
T ss_pred EEE-CCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHH---HcCCCEEEEecCCCC-hHHHHHH
Confidence 444 554444444556678888888898887766654332 223444443 367999999887743 2334444
No 233
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=39.75 E-value=1.3e+02 Score=26.79 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC--CCcEEEEEcCCch-----HHHHHHhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS--SYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~--~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
.++.+|++.|+++....+- +++..++.+.+.+ ..+ ++|.||..||=|. +.+++..+.
T Consensus 24 ~l~~~l~~~G~~v~~~~~v-~Dd~~~i~~~l~~-~~~~~~~DlVittGG~s~g~~D~t~~al~~~~ 87 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIV-PDDKDEIREALIE-WADEDGVDLILTTGGTGLAPRDVTPEATRPLL 87 (152)
T ss_pred HHHHHHHHcCCeeeeEEEc-CCCHHHHHHHHHH-HHhcCCCCEEEECCCcCCCCCcCcHHHHHHHh
Confidence 5888999999876544332 3333444444332 223 7999999999664 555665554
No 234
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=39.73 E-value=91 Score=30.40 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=40.7
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
++..|+|+++|-||.-. .--+...|.+.|-.+.++.+....+...+.+..
T Consensus 2 ~vItf~s~KGGaGKTT~-~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTA-AMALASELAARGARVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CeEEEecCCCCCcHHHH-HHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhc
Confidence 57899999999998532 235677788889999999999999988887654
No 235
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=39.47 E-value=95 Score=29.46 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
.+.+.++..+++.|+++.+..+.......++.+.+. ..+.|+|++++.+
T Consensus 18 ~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~ 66 (260)
T cd06304 18 SAYEGLEKAEKELGVEVKYVESVEDADYEPNLRQLA---AQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHH---HcCCCEEEECCcc
Confidence 344457778888887776655543333334445443 3578999999877
No 236
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=39.11 E-value=1.1e+02 Score=30.22 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=30.8
Q ss_pred CCcEEEEEEcCCCCCCCh-----hhhHHHHHHHH-HhcceeEE-EEEeCCCC
Q 037501 51 RPKNLLIFIHPMSGKGSG-----RRTWETVAPIF-VRAKVNTK-VIVTQRAG 95 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~-----~~~~~~v~~~l-~~agi~~~-v~~T~~~~ 95 (438)
....+.|||||.+|-|.+ ...|....+.| +.+++++- .+.|.+..
T Consensus 29 p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Yg~ 80 (253)
T PF12138_consen 29 PSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSYGS 80 (253)
T ss_pred CCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEccccC
Confidence 445799999999999965 33466655666 77787654 45566543
No 237
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.06 E-value=1.3e+02 Score=28.43 Aligned_cols=62 Identities=5% Similarity=-0.186 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCc-hHHHHHHhhhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDG-FFNEILNGFLS 133 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDG-Tv~EVvNGL~~ 133 (438)
..+++.++..+++.|+++.+..+.... ...+..+.+. ..+.|+|++.+.|- .+.+.+..+..
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~---~~~~Dgiii~~~~~~~~~~~i~~~~~ 78 (282)
T cd06318 15 AALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLL---TRGVNVLIINPVDPEGLVPAVAAAKA 78 (282)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH---HcCCCEEEEecCCccchHHHHHHHHH
Confidence 344556788888888877655443211 1123344443 36789999988763 23455555543
No 238
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.82 E-value=1.9e+02 Score=26.34 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh-hcCCCcEEEEEcCCch-----HHHHHHhhhhc
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK-ELSSYDGVLAVGGDGF-----FNEILNGFLSS 134 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~-~~~~~d~IV~vGGDGT-----v~EVvNGL~~~ 134 (438)
.+..+|++.|+++....+- +++..++.+.+.+. +...+|.||..||=|. .-|++..++.+
T Consensus 26 ~l~~~L~~~G~~v~~~~iv-~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~ 91 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIV-KDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDK 91 (163)
T ss_pred HHHHHHHHCCCeEEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCC
Confidence 5788899999877644333 34444444444321 1357999999999764 56777777655
No 239
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=38.50 E-value=3e+02 Score=27.39 Aligned_cols=97 Identities=5% Similarity=-0.139 Sum_probs=56.4
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~~~ 103 (438)
+...+......+.+.+.+ ...+++.+|+.... -+....+.++..|++.|+++... +.....+...++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~------~~~~~v~il~~d~~---~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~ 188 (347)
T cd06336 118 VPPIYNVYGVPFLAYAKK------PGGKKVALLGPNDA---YGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTK 188 (347)
T ss_pred ecCCchhHHHHHHHHHhh------cCCceEEEEccCCc---hhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHH
Confidence 444444444444443332 25578888875433 23455677888899998766422 12223445555555
Q ss_pred hhhhhcCCCcEEEEEcCCc-hHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDG-FFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDG-Tv~EVvNGL~~~ 134 (438)
+. ..+.|+|++.+-.. .+..+++.+-..
T Consensus 189 i~---~~~~d~v~~~~~~~~~~~~~~~~~~~~ 217 (347)
T cd06336 189 LL---AEKPDVIFLGGPSPAPAALVIKQAREL 217 (347)
T ss_pred HH---hcCCCEEEEcCCCchHHHHHHHHHHHc
Confidence 54 26788888776555 677777777543
No 240
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=38.41 E-value=3.7e+02 Score=27.01 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC----CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR----AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+++.|+.+-..+- +....+.+...+++.|+++.....-. ..+...+++++. ... |+||+++.......+
T Consensus 137 ~~~v~ii~~~~~~~--g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~---~~~-~vii~~~~~~~~~~~ 210 (389)
T cd06352 137 WHVAVVVYSDDSEN--CFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIK---RRS-RIIIMCGSSEDVREL 210 (389)
T ss_pred ceEEEEEEecCCcc--HHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhh---hcc-eEEEEECCHHHHHHH
Confidence 46777777655422 23345667788888888765433222 233444455543 234 788888877777777
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
+..+...
T Consensus 211 l~q~~~~ 217 (389)
T cd06352 211 LLAAHDL 217 (389)
T ss_pred HHHHHHc
Confidence 7766554
No 241
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.35 E-value=3.5e+02 Score=25.50 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=52.1
Q ss_pred cCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE-EEeCC-CChHHHHHHHh
Q 037501 27 GHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV-IVTQR-AGQAFDVMAST 104 (438)
Q Consensus 27 ~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v-~~T~~-~~ha~~~~~~~ 104 (438)
...+.+......+.|.+.+ +..+++++|..+.. ......++-....|+..++++.- ..+.. ...+.+.++++
T Consensus 106 ~~d~~~~g~~aa~~l~~~~----~g~~~i~~~~g~~~--~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (274)
T cd06311 106 AGDNYGMGRVAGEYIATKL----GGNGNIVVLRGIPT--PIDNERVDAFDAAIAKYPIKILDRQYANWNRDDAFSVMQDL 179 (274)
T ss_pred cCCcHHHHHHHHHHHHHHh----CCCCeEEEEECCCC--cchhHHHHHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHHH
Confidence 4444555555566666554 24578888865443 22333344567777777754321 11221 12334444443
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.. .....++| ++.+|.+..-+++.|...
T Consensus 180 l~-~~~~~~ai-~~~~d~~a~g~~~al~~~ 207 (274)
T cd06311 180 LT-KFPKIDAV-WAHDDDMAVGVLAAIKQA 207 (274)
T ss_pred HH-hCCCcCEE-EECCCcHHHHHHHHHHHc
Confidence 21 11235555 456777777788887654
No 242
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=37.89 E-value=1.6e+02 Score=27.63 Aligned_cols=81 Identities=20% Similarity=0.137 Sum_probs=51.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC----ChHHHHHHHhh-----h-------hhcCCCcEEE
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA----GQAFDVMASTK-----N-------KELSSYDGVL 116 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~----~ha~~~~~~~~-----~-------~~~~~~d~IV 116 (438)
|-+.|.+-|++ .|......+.+...++.+|++++++..... -.+.+.+..-. + ..+..+|+||
T Consensus 2 ki~~I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI 80 (207)
T COG0655 2 KILGINGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGII 80 (207)
T ss_pred eeeEEEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEE
Confidence 45667788998 888888889999999999999988866532 22222221100 0 0123467776
Q ss_pred EEcC--CchHHHHHHhhhhc
Q 037501 117 AVGG--DGFFNEILNGFLSS 134 (438)
Q Consensus 117 ~vGG--DGTv~EVvNGL~~~ 134 (438)
...= -|.++..+--++.|
T Consensus 81 ~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 81 FGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred EeCCeecCCchHHHHHHHhh
Confidence 6553 46666666666655
No 243
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=37.67 E-value=2.3e+02 Score=27.44 Aligned_cols=62 Identities=5% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHH---------HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMA---------STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~---------~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
..++..+++ +|.+++|+-.+-..+..+++. .....++.+++.|+++-+|--+|+-|-.....
T Consensus 38 ~RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~ 108 (223)
T PRK05562 38 FIKGKTFLK-KGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDR 108 (223)
T ss_pred HHHHHHHHh-CCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 456766665 778888876654444444432 11223577899999999999999999888765
No 244
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=37.52 E-value=57 Score=32.26 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
+|+.|++-|-+..- ..+...|+++|++++++.+.... +. ..+++.||+||+.||
T Consensus 4 ~kvaVl~~pG~n~d------~e~~~Al~~aG~~v~~v~~~~~~---~~-----~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCE------DETVKAFRRLGVEPEYVHINDLA---AE-----RKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCH------HHHHHHHHHCCCcEEEEeecccc---cc-----ccchhhCCEEEECCC
Confidence 57999998755422 14457788899988777654311 10 013568999999999
No 245
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.43 E-value=4.2e+02 Score=26.30 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.+++.+|+.... -+....+.++..|++.|+++....+- ...+....++++. ..+.|.|++.+.....-.++.
T Consensus 138 ~~~v~ii~~~~~---~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~---~~~~d~v~~~~~~~~~~~~~~ 211 (347)
T cd06335 138 FKKVALLLDNTG---WGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAK---AAGADAIIIVGNGPEGAQIAN 211 (347)
T ss_pred CCeEEEEeccCc---hhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHH---hCCCCEEEEEecChHHHHHHH
Confidence 478888886543 23344567888899999876432221 2234445555554 257899998887777777887
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+...
T Consensus 212 ~~~~~ 216 (347)
T cd06335 212 GMAKL 216 (347)
T ss_pred HHHHc
Confidence 77654
No 246
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.19 E-value=42 Score=28.86 Aligned_cols=26 Identities=15% Similarity=0.416 Sum_probs=23.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++++.|+++|++.+..
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 46779999999999999999999864
No 247
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=37.16 E-value=94 Score=32.44 Aligned_cols=68 Identities=7% Similarity=-0.063 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-CCCChHH
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-QRAGQAF 98 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~~~~ha~ 98 (438)
++++..+|.+.+..........+.+++.|.|.++|-||.. +--.+...|...|.++-++-. ...+++.
T Consensus 83 tL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT-~a~nLA~~LA~~G~rVLlID~~DpQ~nlt 151 (388)
T PRK13705 83 TIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTS-VSVHLAQDLALKGLRVLLVEGNDPQGTAS 151 (388)
T ss_pred CHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHH-HHHHHHHHHHhcCCCeEEEcCCCCCCchh
Confidence 4566777766665543333334457899999999998853 223566778888988877764 6666654
No 248
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=37.01 E-value=1.8e+02 Score=26.59 Aligned_cols=68 Identities=10% Similarity=0.030 Sum_probs=42.4
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
|..+......+.+.++..++..|+++.+..+.... ...+.++++. ..++|+||+.+.+......+.-+
T Consensus 7 ~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~---~~~~d~ii~~~~~~~~~~~~~~l 75 (264)
T cd01537 7 PDLDNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLI---ARGVDGIIIAPSDLTAPTIVKLA 75 (264)
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEecCCCcchhHHHHh
Confidence 55433333444556888888889888777665422 2345555553 25799999999886654444444
No 249
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=37.00 E-value=35 Score=34.85 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCC--CChhhh--HHHHHHHHHhcceeEEEEEeCCC-------ChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 54 NLLIFIHPMSGK--GSGRRT--WETVAPIFVRAKVNTKVIVTQRA-------GQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 54 ~llvivNP~sG~--g~~~~~--~~~v~~~l~~agi~~~v~~T~~~-------~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
+++-|.|=+.|= ++-..+ ++.|..+...-|- +.-|.+. .+-..+++.+. ..+.|.+|++||||
T Consensus 32 ~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~~~~~~~~~l~---~~~Id~LivIGGdg 105 (324)
T TIGR02483 32 EVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT---ILGSSRTNPFKYEEDGDDKIVANLK---ELGLDALIAIGGDG 105 (324)
T ss_pred eEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc---cccCCCCCccccCHHHHHHHHHHHH---HcCCCEEEEECCch
Confidence 788888866663 222233 5667777766552 2333332 22344555543 35789999999999
Q ss_pred hHHHHHHhhh
Q 037501 123 FFNEILNGFL 132 (438)
Q Consensus 123 Tv~EVvNGL~ 132 (438)
|+.-+ +-|.
T Consensus 106 S~~~a-~~L~ 114 (324)
T TIGR02483 106 TLGIA-RRLA 114 (324)
T ss_pred HHHHH-HHHH
Confidence 99644 3454
No 250
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.99 E-value=1.9e+02 Score=28.30 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=34.1
Q ss_pred HHHHHHHHHh--cceeEEEEEeCCCChHH--HHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 72 WETVAPIFVR--AKVNTKVIVTQRAGQAF--DVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 72 ~~~v~~~l~~--agi~~~v~~T~~~~ha~--~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
.+.++..++. .++++.+..+.+ ..+. ++.+.+. ..+.|+||+++.|.. +.++++.+..
T Consensus 18 ~~gi~~~a~~~~~g~~~~~~~~~~-~~~~q~~~i~~l~---~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (303)
T cd01539 18 RKNLEDIQKENGGKVEFTFYDAKN-NQSTQNEQIDTAL---AKGVDLLAVNLVDPTAAQTVINKAKQ 80 (303)
T ss_pred HHHHHHHHHhhCCCeeEEEecCCC-CHHHHHHHHHHHH---HcCCCEEEEecCchhhHHHHHHHHHH
Confidence 3446777777 566655554432 2222 3334432 368999999988865 4667766644
No 251
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=36.67 E-value=75 Score=36.27 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCCCCCh--hh-hHHHHHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 52 PKNLLIFIHPMSGKGSG--RR-TWETVAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 52 pk~llvivNP~sG~g~~--~~-~~~~v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
..+++-|.|=+.|=-+. .. .|+.|..+...-|- +.-|.+. .+...+++.+. .-+.|++|++|||||+.
T Consensus 419 g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~i~~~l~---~~~Id~LivIGGdgs~~ 492 (745)
T TIGR02478 419 GHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS---ELGTNRELPGKDLGMIAYYFQ---KHKIDGLLIIGGFEAFE 492 (745)
T ss_pred CCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc---ccccCCCCchhHHHHHHHHHH---HcCCCEEEEeCChHHHH
Confidence 35889999977763222 22 25567777776663 3344443 23445555553 35789999999999986
Q ss_pred HHH
Q 037501 126 EIL 128 (438)
Q Consensus 126 EVv 128 (438)
-+.
T Consensus 493 ~a~ 495 (745)
T TIGR02478 493 ALL 495 (745)
T ss_pred HHH
Confidence 443
No 252
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=36.54 E-value=93 Score=25.17 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.7
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR 93 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~ 93 (438)
+.|+|+++|-|+.. +-..+...|.+.|.++-++.+..
T Consensus 2 i~~~~~kgG~Gkst-~~~~la~~~~~~~~~vl~~d~d~ 38 (104)
T cd02042 2 IAVANQKGGVGKTT-TAVNLAAALARRGKRVLLIDLDP 38 (104)
T ss_pred EEEEeCCCCcCHHH-HHHHHHHHHHhCCCcEEEEeCCC
Confidence 57899999988853 23356667777787776665543
No 253
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.53 E-value=1.6e+02 Score=27.73 Aligned_cols=62 Identities=10% Similarity=-0.060 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHH---HHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAF---DVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~---~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
.++++.+...++..|..++++......+.. ++.+.+. ..+.|+||+.+.|.. ..+++.-+..
T Consensus 15 ~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~dgiIi~~~~~~~~~~~i~~~~~ 80 (271)
T cd06321 15 VALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFI---AAKVDLILLNAVDSKGIAPAVKRAQA 80 (271)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHH---HhCCCEEEEeCCChhHhHHHHHHHHH
Confidence 345556778888733444444332222222 2233332 357899999888764 4566665544
No 254
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=36.29 E-value=1e+02 Score=27.89 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++......|++++++.|.+.|...+...++. +++|+||+=-|
T Consensus 34 ~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~----~~~dgiIINpg 76 (146)
T PRK13015 34 LCRAAAEALGLEVEFRQSNHEGELIDWIHEAR----GDVAGIVINPG 76 (146)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh----hcCCEEEEcch
Confidence 45555556689999999999999888887752 45788775433
No 255
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.11 E-value=4.4e+02 Score=26.03 Aligned_cols=78 Identities=9% Similarity=0.013 Sum_probs=46.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..+++.+|+.. ..-+ ....+.++..+++.|+++...+. ....+...++.++. ..+.|.|++.+-.+-.-.++
T Consensus 143 ~~~~va~l~~~-~~~g--~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~---~~~~d~v~~~~~~~~~~~~~ 216 (344)
T cd06345 143 GFKTAAIVAED-AAWG--KGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIK---AADPDVIIAGFSGNVGVLFT 216 (344)
T ss_pred CCceEEEEecC-chhh--hHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHH---hcCCCEEEEeecCchHHHHH
Confidence 56788877653 3222 34456688888888887643222 22334555566654 35688887766555555566
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
..+...
T Consensus 217 ~~~~~~ 222 (344)
T cd06345 217 QQWAEQ 222 (344)
T ss_pred HHHHHc
Confidence 655544
No 256
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=35.79 E-value=1.9e+02 Score=27.22 Aligned_cols=64 Identities=5% Similarity=-0.094 Sum_probs=38.6
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.||+ |.-...--..+.+.+...+++.|+++.+..+..... ..++.+.+. ..++|+||+++-|-.
T Consensus 3 gvi~-p~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~vdgii~~~~~~~ 67 (268)
T cd06270 3 GLVV-SDLDGPFFGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLL---ERRCDALILHSKALS 67 (268)
T ss_pred EEEE-ccccCcchHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHH---HcCCCEEEEecCCCC
Confidence 3444 443333334455668888899999888776654221 123344432 368999999987643
No 257
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=35.77 E-value=1.5e+02 Score=29.81 Aligned_cols=73 Identities=11% Similarity=-0.110 Sum_probs=39.8
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
++.+++.+++ |.....--..+.+.++..++..|+++.+..+....++.+..+.+......++|+||+++.|..
T Consensus 44 r~t~~Igvv~-p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~ 116 (343)
T PRK10936 44 KKAWKLCALY-PHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPD 116 (343)
T ss_pred CCCeEEEEEe-cCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH
Confidence 3445565555 543332222333457777888888877766543333332222222112367999999987743
No 258
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.69 E-value=1.2e+02 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
|++.+++ |.....--..+.+.+...+++.|+++.+..+.. .....++.+.+. ..++|+||+++.|.. ..+.+.-
T Consensus 1 ~~ig~i~-~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiil~~~~~~~~~~~~~~ 76 (280)
T cd06315 1 KNIIFVA-SDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAI---ALKPDGIVLGGVDAAELQAELEL 76 (280)
T ss_pred CeEEEEe-cccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEcCCCHHHHHHHHHH
Confidence 3455555 432222222444567788888887765554432 111223444443 368999999988743 2344444
Q ss_pred h
Q 037501 131 F 131 (438)
Q Consensus 131 L 131 (438)
+
T Consensus 77 ~ 77 (280)
T cd06315 77 A 77 (280)
T ss_pred H
Confidence 4
No 259
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=35.66 E-value=1.6e+02 Score=31.03 Aligned_cols=55 Identities=11% Similarity=0.150 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~ 92 (438)
.....++.|.+.+....-+.+.+-|+|+|..|.+. . -+..+|++.|+++..+..+
T Consensus 147 ~~~~Y~~~l~~~i~~~~i~~~~lkIvvd~~~G~~~--~---~~~~ll~~lG~~v~~i~~~ 201 (441)
T cd05805 147 FVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAG--I---VLPGLLSRLGCDVVILNAR 201 (441)
T ss_pred HHHHHHHHHHHHhCHHHHhhcCCeEEEECCCchHH--H---HHHHHHHHcCCEEEEEecc
Confidence 45667777766653221123578999999887553 3 3456677778877655433
No 260
>PLN02335 anthranilate synthase
Probab=35.52 E-value=1.6e+02 Score=28.21 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=42.1
Q ss_pred cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 49 VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 49 ~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
+...++++||=| +.+ |. .+...|++.|++++++.... ..+.++. ...+|+||+-||-|..++.
T Consensus 15 ~~~~~~ilviD~---~ds-----ft~~i~~~L~~~g~~~~v~~~~~-~~~~~~~-------~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 15 SKQNGPIIVIDN---YDS-----FTYNLCQYMGELGCHFEVYRNDE-LTVEELK-------RKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred cCccCcEEEEEC---CCC-----HHHHHHHHHHHCCCcEEEEECCC-CCHHHHH-------hcCCCEEEEcCCCCChhhc
Confidence 445578888866 211 33 47788888899888875432 2233321 1468999999999999874
No 261
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=35.51 E-value=4.3e+02 Score=25.77 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=44.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++ |.-...-...+.+.+...+++.|+.+.+..+.... ...++.+.+. ..+.|+||+.+.+..-.+.+.
T Consensus 59 ~~~~Igvi~-~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~~ 134 (327)
T TIGR02417 59 RSRTIGLVI-PDLENYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLL---ARQVDALIVASCMPPEDAYYQ 134 (327)
T ss_pred CCceEEEEe-CCCCCccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCCCChHHHH
Confidence 455676666 43222223344556778888888887766554321 1223344432 357999999987653345555
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-|.
T Consensus 135 ~l~ 137 (327)
T TIGR02417 135 KLQ 137 (327)
T ss_pred HHH
Confidence 554
No 262
>PRK05670 anthranilate synthase component II; Provisional
Probab=35.34 E-value=81 Score=29.08 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=32.1
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+...|++.|++++++...... ..++ .. ..+|+||+.||-|+.++
T Consensus 13 ~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~------~~~dglIlsgGpg~~~d 58 (189)
T PRK05670 13 YNLVQYLGELGAEVVVYRNDEIT-LEEI-EA------LNPDAIVLSPGPGTPAE 58 (189)
T ss_pred HHHHHHHHHCCCcEEEEECCCCC-HHHH-Hh------CCCCEEEEcCCCCChHH
Confidence 35788889899988877554322 2222 11 24899999999999876
No 263
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.31 E-value=3.9e+02 Score=26.83 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCC---CChHHHHHHHhh
Q 037501 33 TCEMWVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQR---AGQAFDVMASTK 105 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~ 105 (438)
.++.+.+.|.+.+.... ++..+|.+|.= |...+...|.+ .....++.|++++.+.-.. ..+..+..+++.
T Consensus 10 ia~~i~~~lk~~v~~l~~~~g~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 86 (284)
T PRK14179 10 LAQKMQAELAEKVAKLKEEKGIVPGLVVILV---GDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYN 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45566666666654421 22334544432 44556677764 6788899999998664332 223334444443
Q ss_pred hhhcCCCcEEEE
Q 037501 106 NKELSSYDGVLA 117 (438)
Q Consensus 106 ~~~~~~~d~IV~ 117 (438)
+ .+..|+|++
T Consensus 87 ~--d~~V~GIiv 96 (284)
T PRK14179 87 Q--DPTWHGILV 96 (284)
T ss_pred C--CCCCCEEEE
Confidence 2 245777775
No 264
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.29 E-value=1.4e+02 Score=28.12 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=34.4
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
+|+.||-+ |.|. ...+...|++.|.++++..|..+. +++++|+||+-|+ |...+..
T Consensus 2 ~~~~iid~---g~gn----~~s~~~al~~~g~~~~v~~~~~~~------------~l~~~d~lIlpG~-~~~~~~~ 57 (209)
T PRK13146 2 MTVAIIDY---GSGN----LRSAAKALERAGAGADVVVTADPD------------AVAAADRVVLPGV-GAFADCM 57 (209)
T ss_pred CeEEEEEC---CCCh----HHHHHHHHHHcCCCccEEEECCHH------------HhcCCCEEEECCC-CcHHHHH
Confidence 46676666 3333 234567778888866666666431 2367999999776 5444443
No 265
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=35.29 E-value=1.7e+02 Score=26.42 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=41.1
Q ss_pred CCCC-CCChhhhHHHHHHHHHh--cceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 61 PMSG-KGSGRRTWETVAPIFVR--AKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 61 P~sG-~g~~~~~~~~v~~~l~~--agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
|.+| ......+++.++..+++ .++++.++.++... ...+.++++. ..++|+|+..+.+.+...++.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~ii~~~~~~~~~~~~~~~~ 79 (269)
T cd01391 7 PLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLI---QQGVDGIIGPPSSSSALAVVELAA 79 (269)
T ss_pred ecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHH---HcCCCEEEecCCCHHHHHHHHHHH
Confidence 5553 22223334456777777 66666666565432 4455555554 257999999988877665554443
No 266
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=35.21 E-value=35 Score=34.97 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=40.9
Q ss_pred cEEEEEEcCCCCCCCh--hhh-HHHHHHHHHhcceeEEEEEeCCCC------hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSG--RRT-WETVAPIFVRAKVNTKVIVTQRAG------QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~--~~~-~~~v~~~l~~agi~~~v~~T~~~~------ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.+++-|.|=+.|=-+. ..+ ++.+..+...-|- +.-|.+.. .-..+++.+. ..+.|.+|++|||||
T Consensus 31 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs---~LgtsR~~~~~~~~~~~~~~~~l~---~~~I~~Lv~IGGd~s 104 (338)
T cd00363 31 LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT---IIGSARCKEFRTEEGRAKAAENLK---KHGIDALVVIGGDGS 104 (338)
T ss_pred CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe---ecccCCCCccCCHHHHHHHHHHHH---HhCCCEEEEeCCHHH
Confidence 5888888877764332 122 3346655554443 33344322 2334555553 357899999999999
Q ss_pred HHHH
Q 037501 124 FNEI 127 (438)
Q Consensus 124 v~EV 127 (438)
+.-+
T Consensus 105 ~~~a 108 (338)
T cd00363 105 YTGA 108 (338)
T ss_pred HHHH
Confidence 8644
No 267
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.20 E-value=1.8e+02 Score=27.56 Aligned_cols=56 Identities=9% Similarity=-0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChH---HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQA---FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..++..++..|+++.+..+...... .+..+.+. ..+.|+||+.+.|.+-.+.+.-+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~---~~~vdgiI~~~~~~~~~~~~~~~ 77 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCA---AWGADAILLGAVSPDGLNEILQQ 77 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH---HcCCCEEEEcCCChhhHHHHHHH
Confidence 3466778888887766654432222 23444443 25799999998876543334444
No 268
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=35.12 E-value=1.3e+02 Score=30.87 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhhhcc-CCCcEEEEEEcCCCCCCCh--hhhHHHHHHHHHh---cceeEEEEEeCCCChHHHHHHHh
Q 037501 31 LPTCEMWVNRVNAFLNMEV-GRPKNLLIFIHPMSGKGSG--RRTWETVAPIFVR---AKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~-~rpk~llvivNP~sG~g~~--~~~~~~v~~~l~~---agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
.+...+-++.+.+.+.... .+||=.+.=+||++|.+-. .+--+.|.|..++ .|+++. .+--|-.+-...
T Consensus 180 ~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAi~~~~~~G~~v~-----GP~paDt~F~~~ 254 (326)
T PRK03371 180 TARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEEIRIVTPAIEAMRAKGMDVY-----GPCPPDTVFLQA 254 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCccc-----CCCCchhhcccc
Confidence 3334444555555554222 3554444448999997532 2223346665554 455542 333333322222
Q ss_pred hhhhcCCCcEEEEE
Q 037501 105 KNKELSSYDGVLAV 118 (438)
Q Consensus 105 ~~~~~~~~d~IV~v 118 (438)
....||+||++
T Consensus 255 ---~~~~~D~vvaM 265 (326)
T PRK03371 255 ---YEGQYDMVVAM 265 (326)
T ss_pred ---cccCCCEEEEc
Confidence 23679999975
No 269
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.01 E-value=70 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=23.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
..|++..++++.=+.|+..|+++|.
T Consensus 89 ~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 89 NRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhh
Confidence 6799999999999999999999875
No 270
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=34.99 E-value=13 Score=40.90 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=17.2
Q ss_pred cEEEEEcCCchHHHHHHhhhhc
Q 037501 113 DGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 113 d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
-+|-.=-|||.+|..+|-++.-
T Consensus 459 GgVslrpgdGVIHswLNrmllp 480 (852)
T COG1049 459 GGVSLRPGDGVIHSWLNRMLLP 480 (852)
T ss_pred CceecCCCCccHHHHHHhccCC
Confidence 4555667999999999998653
No 271
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=34.89 E-value=1.6e+02 Score=27.92 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhccee-EEEEEeCCCChH--HHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVN-TKVIVTQRAGQA--FDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~-~~v~~T~~~~ha--~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
+..+++|| |.++.. .....+...+.|++.|++ ++++.+.....+ .++.+. +...|+|++.|||=
T Consensus 28 ~~~~i~~i--ptA~~~-~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~-----l~~ad~I~~~GG~~ 94 (217)
T cd03145 28 AGARIVVI--PAASEE-PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVAR-----LRDADGIFFTGGDQ 94 (217)
T ss_pred CCCcEEEE--eCCCcC-hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHH-----HHhCCEEEEeCCcH
Confidence 34455444 333322 234466788888888874 455444321111 122332 35689999999996
No 272
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=34.84 E-value=2.3e+02 Score=26.48 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=40.7
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+.|++ |.....--..+++.+...+++.|+.+.+..+++. ....+.++.+. ..+.|+|++++.+.. -.++.-|
T Consensus 2 i~vv~-p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~~~-~~~~~~l 74 (268)
T cd06273 2 IGAIV-PTLDNAIFARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLL---ERGVDGLALIGLDHS-PALLDLL 74 (268)
T ss_pred eEEEe-CCCCCchHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHH---hcCCCEEEEeCCCCC-HHHHHHH
Confidence 34555 5443333344555688888888877766544432 22234444443 246899999987654 2444444
No 273
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.71 E-value=39 Score=26.51 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+.+.|...+.++...|++.|+++
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 57889999999999999999763
No 274
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=34.65 E-value=32 Score=34.39 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=21.0
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
++++.+. ..+.|.+|++|||||+.-+ +-|.
T Consensus 83 ~~~~~l~---~~~Id~Li~IGG~gs~~~a-~~L~ 112 (282)
T PF00365_consen 83 KIVENLK---KLGIDALIVIGGDGSMKGA-HKLS 112 (282)
T ss_dssp HHHHHHH---HTTESEEEEEESHHHHHHH-HHHH
T ss_pred hHHHHHH---HhCCCEEEEecCCCHHHHH-HHHH
Confidence 3445543 3578999999999998765 4454
No 275
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.64 E-value=4.2e+02 Score=26.67 Aligned_cols=80 Identities=6% Similarity=0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhc---cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC---CChHHHHHHHh
Q 037501 32 PTCEMWVNRVNAFLNME---VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR---AGQAFDVMAST 104 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~---~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~ 104 (438)
+.++.+.+.|.+.+... ..+|+=..|.+ |...+...|. ......++.|++++.+.-.. ..+..+..+++
T Consensus 10 ~va~~i~~~lk~~i~~l~~~g~~p~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (285)
T PRK14189 10 ALSKQLRAEAAQRAAALTARGHQPGLAVILV----GDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDEL 85 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe----CCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666666665432 12443334444 4445667776 47788899999998775332 23334444444
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+..|+|++
T Consensus 86 N~--d~~V~GIlv 96 (285)
T PRK14189 86 NR--DPKIHGILV 96 (285)
T ss_pred cC--CCCCCeEEE
Confidence 32 245677775
No 276
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=34.59 E-value=1e+02 Score=27.73 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
+++....+.|++++++.|.+.|...+...++. +.+|+||+=
T Consensus 33 ~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~----~~~dgiIIN 73 (140)
T PF01220_consen 33 KCKETAAELGVEVEFFQSNHEGELIDWIHEAR----DDVDGIIIN 73 (140)
T ss_dssp HHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHT----CTTSEEEEE
T ss_pred HHHHHHHHCCCeEEEEecCCHHHHHHHHHHHH----hhCCEEEEc
Confidence 35556667789999999999999888888763 458988854
No 277
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=34.57 E-value=1.1e+02 Score=27.59 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=31.8
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++......|++++++.+.+.|...+...++. +.+|+||+=-|
T Consensus 32 ~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~----~~~dgiIINpg 74 (141)
T TIGR01088 32 IIETFAAQLNVELEFFQSNSEGQLIDKIHEAE----GQYDGIIINPG 74 (141)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc----ccCCEEEEcCh
Confidence 45555556689999999999999888887752 45788875443
No 278
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.28 E-value=93 Score=27.03 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=36.7
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
..+..+|++.|+++....+- +++..++.+.+.+ .++.+|.|+..||=|. ..|++..+..
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v-~Dd~~~i~~~i~~-~~~~~DlvittGG~g~g~~D~t~~ai~~~g~ 85 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVV-PDDADSIRAALIE-ASREADLVLTTGGTGVGRRDVTPEALAELGE 85 (133)
T ss_pred HHHHHHHHHCCCEEEEeeec-CCCHHHHHHHHHH-HHhcCCEEEECCCCCCCCCcchHHHHHHhcC
Confidence 35788899999876544332 2333344444322 2356999999999773 5666666543
No 279
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=34.27 E-value=1.9e+02 Score=31.46 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 49 VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 49 ~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
.+..+.+-||||-.+|++. ..+.++++.+++++|.++-++......-|+ ++ + ....|+.|.+|
T Consensus 278 A~~A~~~GIlVgTL~~q~~-~~ii~~l~~li~~~GkK~yl~~vgkinpaK-La----N--F~eID~fV~va 340 (496)
T TIGR00272 278 ARDAGCIGIVVGTLGVRNT-RETINELRKMIKTAGKKHYLFVVGKPNPAK-LA----N--FEDIDIFVLLG 340 (496)
T ss_pred HhcCCEEEEEEecCccCCC-HHHHHHHHHHHHHcCCcEEEEEeCCCCHHH-Hh----C--CCCCCEEEEcc
Confidence 3456889999999999876 678899999999999999888888877653 22 1 34578777665
No 280
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.25 E-value=3.9e+02 Score=24.85 Aligned_cols=98 Identities=8% Similarity=0.034 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeC-CCChHHHHHHHh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQ-RAGQAFDVMAST 104 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~-~~~ha~~~~~~~ 104 (438)
.+.+......+.|.+. ..+++.+|..+..........++-.+..++..++++. +..+. ....+.+.++.+
T Consensus 99 d~~~~~~~~~~~l~~~------g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (268)
T cd06298 99 DYKKAAFEATELLIKN------GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEEL 172 (268)
T ss_pred CcHHHHHHHHHHHHHc------CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHH
Confidence 3445556666666541 4578888765432111222333446677777776542 22222 233455555554
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
.+ ...+++|++ .+|.+...++..|....
T Consensus 173 l~--~~~~~ai~~-~~d~~a~~~~~~l~~~g 200 (268)
T cd06298 173 LE--DGKPTAAFV-TDDELAIGILNAAQDAG 200 (268)
T ss_pred hc--CCCCCEEEE-cCcHHHHHHHHHHHHcC
Confidence 22 112677775 78888888888887653
No 281
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.25 E-value=3.9e+02 Score=26.98 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhcc----CCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCC---ChHHHHHHHh
Q 037501 33 TCEMWVNRVNAFLNMEV----GRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRA---GQAFDVMAST 104 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~----~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~ 104 (438)
.++.+.+.|.+.+.... .+|+=..|.++ ...+...|. ......++.|++++.+.-... .+..+..+++
T Consensus 9 iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (295)
T PRK14174 9 VSLDLKNELKTRVEAYRAKTGKVPGLTVIIVG----EDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDL 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeEEEEEeC----CChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45555566666554321 24443444454 444567776 477888999999987754432 2333444444
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+..|+|++
T Consensus 85 N~--D~~V~GIlv 95 (295)
T PRK14174 85 NN--DPDVHGILV 95 (295)
T ss_pred hC--CCCCCEEEE
Confidence 32 245677764
No 282
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=34.18 E-value=40 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhcc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEV 49 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~ 49 (438)
..+.|.|.|..+.+.|++.|+..|....
T Consensus 80 G~vEfec~~~~~~k~W~~gI~~mL~~~~ 107 (110)
T PF08458_consen 80 GVVEFECDSQREYKRWVQGIQHMLSQVA 107 (110)
T ss_pred cEEEEEeCChhhHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999997543
No 283
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.96 E-value=1.8e+02 Score=27.12 Aligned_cols=63 Identities=10% Similarity=-0.048 Sum_probs=40.1
Q ss_pred EcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC--ChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 59 IHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA--GQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 59 vNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~--~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
+-|.-...-...+++.++..+++.|+.+.+..++.. ....++.+.+. ..+.|+|++.+-+-.-
T Consensus 5 i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~~~~ 69 (264)
T cd01574 5 VTTDLALHGPSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLL---AQRVDGVIVNAPLDDA 69 (264)
T ss_pred EeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHH---hcCCCEEEEeCCCCCh
Confidence 335444333455666788888888998888877643 22344455543 3579999998865443
No 284
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=33.88 E-value=38 Score=26.74 Aligned_cols=22 Identities=9% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEeecCCChHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNA 43 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~ 43 (438)
+.+.|...+.++.+.|+.+|++
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 5689999999999999999975
No 285
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=33.37 E-value=42 Score=28.85 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCceEE-----EEEeecCCChHHHHHHHHHHHHH
Q 037501 16 PNLWVL-----AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 16 ~~~w~~-----~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
++-+++ .++.|.+.|.++...|+++|+-.
T Consensus 84 ~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 84 KNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp SSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 455655 48999999999999999999864
No 286
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=33.12 E-value=1e+02 Score=23.57 Aligned_cols=49 Identities=20% Similarity=0.394 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
+..+...|+.++++++++-... +.... ......+|+|++.||.+...+.
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~-~~~~~------~~~~~~~d~lii~g~~~~~~~~ 62 (115)
T cd01653 14 LASPLDALREAGAEVDVVSPDG-GPVES------DVDLDDYDGLILPGGPGTPDDL 62 (115)
T ss_pred hHHHHHHHHHCCCeEEEEcCCC-Cceec------cCChhccCEEEECCCCCchhhh
Confidence 4456777888887777654333 21111 1134689999999999987765
No 287
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=32.88 E-value=1.2e+02 Score=32.50 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=42.1
Q ss_pred cEEEEEEcCCCCCCCh--hhh-HHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 53 KNLLIFIHPMSGKGSG--RRT-WETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 53 k~llvivNP~sG~g~~--~~~-~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+++-|.|=+.|=-.. ..+ ++.|..+...-| ++.-|.+.. +..++++.+. ..+.|.++++|||||+.-+
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTSR~~~~~~~iv~~L~---~~~I~~L~vIGGdgT~~~A 192 (459)
T PTZ00286 120 KTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGG---TILGSSRGGFDPKVMVDTLI---RHGINILFTLGGDGTHRGA 192 (459)
T ss_pred cEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCC---ceeccCCChhhHHHHHHHHH---HcCCCEEEEeCCchHHHHH
Confidence 5788888866653222 122 345666655555 344454433 3455555554 3678999999999998643
No 288
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=32.83 E-value=2.4e+02 Score=25.80 Aligned_cols=71 Identities=8% Similarity=-0.065 Sum_probs=41.9
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.++.|.....-...+++.++..++..|+++.+....... ...+.++.+. ..++|+||+.+.|.+-.. +.-+
T Consensus 3 ~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~iii~~~~~~~~~-~~~~ 74 (264)
T cd06267 3 GVIVPDISNPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLL---SRRVDGIILAPSRLDDEL-LEEL 74 (264)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH---HcCcCEEEEecCCcchHH-HHHH
Confidence 345555422333344456777787778877766554321 1334455543 258999999999987655 4444
No 289
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.82 E-value=4.8e+02 Score=26.20 Aligned_cols=80 Identities=9% Similarity=0.035 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCC---CChHHHHHHHhhh
Q 037501 33 TCEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKN 106 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~ 106 (438)
.++...+.|.+.+... .++..+|.+|.= |...+...|.+ .....++.|++++.+.-.. ..+..+..+++.+
T Consensus 11 va~~i~~~l~~~v~~l~~~g~~P~LaiI~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 11 TADEIKADLAERVAALKEKGITPGLGTVLV---GDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455555555554321 123335544432 45556677764 7788899999998776432 2233334444432
Q ss_pred hhcCCCcEEEE
Q 037501 107 KELSSYDGVLA 117 (438)
Q Consensus 107 ~~~~~~d~IV~ 117 (438)
....|+|++
T Consensus 88 --D~~V~GIlv 96 (284)
T PRK14193 88 --DPACTGYIV 96 (284)
T ss_pred --CCCCCEEEE
Confidence 245677765
No 290
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=32.81 E-value=4.7e+02 Score=25.43 Aligned_cols=98 Identities=8% Similarity=0.065 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKN 106 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~ 106 (438)
.+.+.....++.|.+. ..+++.+|..+... ......++-....|++.++.+.++... ....+.+.++.+.+
T Consensus 162 d~~~~~~~a~~~L~~~------G~r~I~~i~~~~~~-~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (328)
T PRK11303 162 DDQDDAEMLAESLLKF------PAESILLLGALPEL-SVSFEREQGFRQALKDDPREVHYLYANSFEREAGAQLFEKWLE 234 (328)
T ss_pred CCHHHHHHHHHHHHHC------CCCeEEEEeCcccc-ccHHHHHHHHHHHHHHcCCCceEEEeCCCChHHHHHHHHHHHc
Confidence 3444445555555443 35788888654321 222333444667788888765554432 22345555555432
Q ss_pred hhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 107 KELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
....+|+|+| ..|-+..-+++.|....
T Consensus 235 -~~~~~~ai~~-~~d~~A~g~~~al~~~g 261 (328)
T PRK11303 235 -THPMPDALFT-TSYTLLQGVLDVLLERP 261 (328)
T ss_pred -CCCCCCEEEE-cCcHHHHHHHHHHHHcC
Confidence 1124676665 56888778888887664
No 291
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=32.76 E-value=4.7e+02 Score=25.64 Aligned_cols=77 Identities=13% Similarity=0.010 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
-+++.+++.... .+....+.+...+++.|+++....+- ...+...+++++. ..+.|.|++.+.+.-+-.++.
T Consensus 141 ~~~v~~v~~~~~---~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~---~~~~d~i~~~~~~~~~~~~~~ 214 (345)
T cd06338 141 PKKVAILYADDP---FSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAK---AAGPDAVVVAGHFPDAVLLVR 214 (345)
T ss_pred CceEEEEecCCc---ccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHH---hcCCCEEEECCcchhHHHHHH
Confidence 467777764322 23345667888889899876533322 2234445555554 356898988887776667776
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+...
T Consensus 215 ~~~~~ 219 (345)
T cd06338 215 QMKEL 219 (345)
T ss_pred HHHHc
Confidence 66543
No 292
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.74 E-value=2.3e+02 Score=26.62 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=36.4
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
|.....-...+++.+...+++.|+++.+..+.. .....++.+.+. ..++|+||+.+-+
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~---~~~~dgiii~~~~ 65 (269)
T cd06293 7 PDIANPFFAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLD---TNHVDGLIFVTNR 65 (269)
T ss_pred CCCCCCcHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HCCCCEEEEeCCC
Confidence 554444444566678888899998887765553 222234444443 3679999998743
No 293
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.72 E-value=4.3e+02 Score=26.35 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeC---CCChHHHHHHHh
Q 037501 32 PTCEMWVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQ---RAGQAFDVMAST 104 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~ 104 (438)
+.++.+.+.|.+.+.... ++..+|.+|.= |...+...|.+ -...+++.|++++++.-. ...+..++.+++
T Consensus 10 ~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~v---g~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~L 86 (283)
T PRK14192 10 ALAKQIEEELSVRVEALKAKTGRTPILATILV---GDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEEL 86 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345666667776665422 23335544442 45556677875 668889999998776541 233344555555
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+.+++|++
T Consensus 87 n~--d~~v~Gi~V 97 (283)
T PRK14192 87 NA--NPDVHGILL 97 (283)
T ss_pred hC--CCCCCEEEE
Confidence 32 235676664
No 294
>CHL00101 trpG anthranilate synthase component 2
Probab=32.28 E-value=92 Score=28.84 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=31.1
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+...|++.|+++.++..... ...++. ...+|+||+.||.|.+.+
T Consensus 14 ~l~~~l~~~g~~~~v~~~~~~-~~~~~~-------~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 14 NLVQSLGELNSDVLVCRNDEI-DLSKIK-------NLNIRHIIISPGPGHPRD 58 (190)
T ss_pred HHHHHHHhcCCCEEEEECCCC-CHHHHh-------hCCCCEEEECCCCCChHH
Confidence 477788888988876654422 222221 246899999999999876
No 295
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.15 E-value=4.7e+02 Score=26.27 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhhh
Q 037501 34 CEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKNK 107 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~~ 107 (438)
++...+.|.+.+... .++..+|.+|.= |...+...|.+ .....++.|++++.+.-... .+..+..+++.
T Consensus 10 a~~i~~~l~~~v~~l~~~g~~P~Laii~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN-- 84 (282)
T PRK14169 10 SKKILADLKQTVAKLAQQDVTPTLAVVLV---GSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELN-- 84 (282)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh--
Confidence 444444454444321 133335544442 45556677764 77888999999987654322 22333444442
Q ss_pred hcCCCcEEEE
Q 037501 108 ELSSYDGVLA 117 (438)
Q Consensus 108 ~~~~~d~IV~ 117 (438)
+....|+|++
T Consensus 85 ~D~~V~GIlv 94 (282)
T PRK14169 85 HDPDVDAILV 94 (282)
T ss_pred CCCCCCEEEE
Confidence 1245677765
No 296
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.07 E-value=3.8e+02 Score=27.02 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=44.0
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
++.+-+.+|+..... --...+...++..+++.|+.+-+..|.+ ...-.++.+.+. ..++|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~-~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~---~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITN-PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLL---QKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCC-chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEec
Confidence 355667777764444 2233555668899999999888887776 333334444443 36899999999
No 297
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.96 E-value=2.4e+02 Score=26.40 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=36.3
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
.|++ |.....--..+++.+...+++.|+.+.+..+..... ..++.+.+. ..+.|+|++++.|
T Consensus 3 ~vi~-~~~~~~~~~~~~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~---~~~~dgiii~~~~ 65 (265)
T cd06290 3 GVLT-QDFASPFYGRILKGMERGLNGSGYSPIIATGHWNQSRELEALELLK---SRRVDALILLGGD 65 (265)
T ss_pred EEEE-CCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HCCCCEEEEeCCC
Confidence 3444 333333334455567888888888876655543221 123344443 3579999999876
No 298
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=31.96 E-value=1.5e+02 Score=28.77 Aligned_cols=55 Identities=15% Similarity=-0.022 Sum_probs=32.3
Q ss_pred HHHHHHHHhcceeEEEEEeCCC-C--hHHHHHHHhhhhhcCCCcEEEEEcCCchH-HHHHHh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRA-G--QAFDVMASTKNKELSSYDGVLAVGGDGFF-NEILNG 130 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~-~--ha~~~~~~~~~~~~~~~d~IV~vGGDGTv-~EVvNG 130 (438)
+.++..++..|+++.+..+... . ...++.+.+. ..++|+||+++.|... .+.+..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~---~~~vDgiIi~~~~~~~~~~~l~~ 77 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCK---SWGADAILLGTVSPEALNHDLAQ 77 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHH---HcCCCEEEEecCChhhhhHHHHH
Confidence 3466777778887776655421 1 2233444443 3689999998876432 344443
No 299
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=31.95 E-value=1.5e+02 Score=28.37 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.+.+.++..+++.|+++.+..+.......+..+.+. ..+.|+||+.+-
T Consensus 19 ~~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~---~~~vdgiI~~~~ 66 (265)
T cd06354 19 SAWEGLERAAKELGIEYKYVESKSDADYEPNLEQLA---DAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH---hCCCCEEEEcCc
Confidence 344457788888888777765543333334444443 367899998864
No 300
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=31.82 E-value=5.1e+02 Score=28.70 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=38.5
Q ss_pred HHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEE
Q 037501 38 VNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 38 ~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
+.+|.+.+.+. --.+++||+|-+ +..+.|...|+++|+++...--....+-++.+-+.- -...+|.+||
T Consensus 505 ~kkL~eil~~~--~~ppiIIFvN~k-------k~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~f--r~~t~dIlVa 573 (673)
T KOG0333|consen 505 RKKLIEILESN--FDPPIIIFVNTK-------KGADALAKILEKAGYKVTTLHGGKSQEQRENALADF--REGTGDILVA 573 (673)
T ss_pred HHHHHHHHHhC--CCCCEEEEEech-------hhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHH--HhcCCCEEEE
Confidence 45556665432 346799999943 235678889999998775433222223333332211 1235676665
No 301
>PRK09701 D-allose transporter subunit; Provisional
Probab=31.81 E-value=3.2e+02 Score=26.81 Aligned_cols=76 Identities=5% Similarity=0.015 Sum_probs=43.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH---HHHHHHhhhhhcCCCcEEEEEcCCch-HHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA---FDVMASTKNKELSSYDGVLAVGGDGF-FNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVv 128 (438)
..+.||+ |..-..--..+.+.+...+++.|+++.+..+....+. .+..+++. ..++|+||+.+.|.. ..+.+
T Consensus 25 ~~Igvi~-~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~---~~~vDgiIi~~~~~~~~~~~l 100 (311)
T PRK09701 25 AEYAVVL-KTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLS---NKNYKGIAFAPLSSVNLVMPV 100 (311)
T ss_pred CeEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChHHHHHHH
Confidence 4566665 4332222233445577888888888776654433332 33444443 357999999998853 33445
Q ss_pred Hhhh
Q 037501 129 NGFL 132 (438)
Q Consensus 129 NGL~ 132 (438)
..+.
T Consensus 101 ~~~~ 104 (311)
T PRK09701 101 ARAW 104 (311)
T ss_pred HHHH
Confidence 5443
No 302
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=31.67 E-value=4.4e+02 Score=24.76 Aligned_cols=80 Identities=9% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE---eC-CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV---TQ-RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~---T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
+.+++.+|..+.. ........+-.+..++..+..+++.. +. ....+.+.++++... ....|+|++.+ |.+ .-
T Consensus 124 ~~~~i~~i~~~~~-~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ai~~~~-d~~-~g 199 (275)
T cd06307 124 RPGKVAVLAGSHR-FRGHEEREMGFRSVLREEFPGLRVLETLEGLDDPARAYEATRKLLAR-HPDLVGIYNAG-GGN-RG 199 (275)
T ss_pred CCCeEEEEecCCC-CcchHHHHHHHHHHHHhhCCCcEEEeeccCCCChHHHHHHHHHHHHh-CCCceEEEECC-CCh-HH
Confidence 3467887765332 11222223446677777665544322 12 123345566555321 23577877775 777 68
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
++++|...
T Consensus 200 ~~~al~~~ 207 (275)
T cd06307 200 VIRALREA 207 (275)
T ss_pred HHHHHHHc
Confidence 88888765
No 303
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=31.66 E-value=1.3e+02 Score=30.47 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=45.8
Q ss_pred EEEEEEcCCCCCCChh----hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGR----RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~----~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+-+|++||.++++.++ ..|.++...|...+ ++|+.+-.+ +-.+.++++.+ .+...+.+=|-.+|-|++.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~-~e~e~~~~i~~----~~~~~~~l~~k~sL~e~~~ 247 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGP-DEEERAEEIAK----GLPNAVILAGKTSLEELAA 247 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecCh-HHHHHHHHHHH----hcCCccccCCCCCHHHHHH
Confidence 3589999994444433 35667888888888 677777776 55566666542 3333332677778888875
Q ss_pred hh
Q 037501 130 GF 131 (438)
Q Consensus 130 GL 131 (438)
-+
T Consensus 248 li 249 (334)
T COG0859 248 LI 249 (334)
T ss_pred HH
Confidence 44
No 304
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=31.62 E-value=3e+02 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=40.9
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
|.....--..+++.+...+++.|+++.+..+.... .-.++.+.+. ..++|+||+.+.|..- +.++-|..
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~-~~~~~l~~ 76 (265)
T cd06299 7 PDIRNPYFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLL---SQRVDGIIVVPHEQSA-EQLEDLLK 76 (265)
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hcCCCEEEEcCCCCCh-HHHHHHHh
Confidence 43333333445566788888889888777664322 2223344432 3579999999887653 44555544
No 305
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=31.58 E-value=4.2e+02 Score=24.49 Aligned_cols=99 Identities=4% Similarity=0.033 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-E-eCCCChHHHHHHHhhh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-V-TQRAGQAFDVMASTKN 106 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~-T~~~~ha~~~~~~~~~ 106 (438)
.+.+......+.|.+. ..+++.+|..+......+....+-....+++.++++... . ......+.+.+.++..
T Consensus 99 d~~~~g~~~~~~l~~~------g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (266)
T cd06282 99 DNRAAARDVAQALAAL------GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIPFNTAALPSALLALLT 172 (266)
T ss_pred CcHHHHHHHHHHHHHc------CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHhc
Confidence 3445555555555542 456787776443222223333445677788777754222 1 1122334455554322
Q ss_pred hhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 107 KELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
. ....|+|++ .+|.+.--+++.|....
T Consensus 173 ~-~~~~~ai~~-~~d~~a~g~~~al~~~g 199 (266)
T cd06282 173 A-HPAPTAIFC-SNDLLALAVIRALRRLG 199 (266)
T ss_pred C-CCCCCEEEE-CCcHHHHHHHHHHHHcC
Confidence 1 124576666 56887778888887654
No 306
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=31.51 E-value=77 Score=25.28 Aligned_cols=47 Identities=6% Similarity=0.004 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
....++...|..+|+.+.+.. .......-.+.+ +..++-.++++|-+
T Consensus 16 ~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a---~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 16 EYAQELANKLRKAGIRVELDD--SDKSLGKQIKYA---DKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHH---HHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHH---hhcCCeEEEEECch
Confidence 334578999999998877664 223222223332 45788999999965
No 307
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=31.43 E-value=1.2e+02 Score=30.27 Aligned_cols=69 Identities=10% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCCCChhhhHHHHHHHHHhc-ceeEEEEEeCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 61 PMSGKGSGRRTWETVAPIFVRA-KVNTKVIVTQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+..-++-....|+-++++-++. ++++...+... ..+..+.++++.+ .+||.||+.|.. +.+.+.-+...
T Consensus 11 ~~~D~g~n~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~---~g~dlIi~~g~~--~~~~~~~vA~~ 82 (306)
T PF02608_consen 11 GINDKGFNQSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLAD---QGYDLIIGHGFE--YSDALQEVAKE 82 (306)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHH---TT-SEEEEESGG--GHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHH---cCCCEEEEccHH--HHHHHHHHHHH
Confidence 4444444455666677777777 88887777666 6677777777753 789999887743 34555555543
No 308
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.40 E-value=3e+02 Score=27.77 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhc----cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEe---CCCChHHHHHHHh
Q 037501 33 TCEMWVNRVNAFLNME----VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVT---QRAGQAFDVMAST 104 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~----~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T---~~~~ha~~~~~~~ 104 (438)
.++...+.|.+.+... ..+|+=..|.+ |...+...|. ......++.|++++.+.- ....+..+..+++
T Consensus 10 ~a~~i~~~i~~~v~~l~~~~g~~p~La~i~v----g~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 10 FAADVRATVAAEVARLKAAHGVTPGLAVVLV----GEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARL 85 (296)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666666665432 12343334444 4444567776 477888999999887632 2233444455555
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+..|+|++
T Consensus 86 N~--d~~V~GIlv 96 (296)
T PRK14188 86 NA--DPAIHGILV 96 (296)
T ss_pred hC--CCCCcEEEE
Confidence 32 246778776
No 309
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.40 E-value=1.1e+02 Score=26.77 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=35.9
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
..+..+|++.|+++.....- +++..++.+.+.+ .++.+|.||..||=|. ..|++..+..
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v-~Dd~~~i~~~l~~-~~~~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIV-PDDPDAIKEALRR-ALDRADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEE-ESSHHHHHHHHHH-HHHTTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCeeeEEEEE-CCCHHHHHHHHHh-hhccCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 35888999999876533221 2344444444422 3456799999998773 4455554443
No 310
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=31.18 E-value=1.7e+02 Score=25.26 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..++++|..=+++.|+.++++.-....++.+++.+++. .++--+=|.+..+||+
T Consensus 16 ~~~lrev~aGIEEEGip~~~~~~~~~~d~~~lA~~AA~--~S~lgVGIGi~~~G~~ 69 (112)
T PF02288_consen 16 SDVLREVLAGIEEEGIPYRVVRVSDTSDVAFLAYQAAR--LSRLGVGIGIQSKGTI 69 (112)
T ss_dssp HHHHHHHHHHHHCTT-EEEEEEECSSSSHHHHHHHHHH--HSTTSEEEEE-TTSEE
T ss_pred hhHHHHHHhHhcccCCCeEEEeecCcccHHHHHHHHhh--ccCcceeEEEcCCCcE
Confidence 46788888888999999999878888999999988764 4666677888999854
No 311
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.12 E-value=4.4e+02 Score=24.58 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeCCCChHHHHHHHhhhh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQRAGQAFDVMASTKNK 107 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~~~~ha~~~~~~~~~~ 107 (438)
.+.+....-++.|.+. ..+++.+|..+. ........+-.+..+...++.+... .......+.+.++++..
T Consensus 98 d~~~~g~~a~~~L~~~------g~~~i~~~~~~~--~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 168 (263)
T cd06280 98 DNRAAARTLVEHLVAQ------GYRRIGGLFGNA--STTGAERRAGYEDAMRRHGLAPDARFVAPTAEAAEAALAAWLA- 168 (263)
T ss_pred CcHHHHHHHHHHHHHC------CCceEEEEeCCC--CCCHHHHHHHHHHHHHHcCCCCChhhcccCHHHHHHHHHHHhc-
Confidence 3444555555555432 456777776532 2222333344667777777765432 22233444555555432
Q ss_pred hcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 108 ELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
.....++ |++.+|.+...++..|....
T Consensus 169 ~~~~~~a-i~~~~d~~a~g~~~~l~~~g 195 (263)
T cd06280 169 APERPEA-LVASNGLLLLGALRAVRAAG 195 (263)
T ss_pred CCCCCcE-EEECCcHHHHHHHHHHHHcC
Confidence 1123555 56699999999999997764
No 312
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=31.03 E-value=5e+02 Score=25.60 Aligned_cols=88 Identities=5% Similarity=-0.079 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHHHHhhhc--------cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHH
Q 037501 30 DLPTCEMWVNRVNAFLNME--------VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDV 100 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~--------~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~ 100 (438)
+++.-+...+.+.+.=|.. .++.+.+.|++. .-...-...+++.+...+++.|+.+.+..+... ..-.++
T Consensus 29 s~~tr~kV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~-~~~~~f~~~l~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~ 107 (346)
T PRK10401 29 SADTREAVMKAVSELGYRPNANAQALATQVSDTIGVVVM-DVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHA 107 (346)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHhhcCCCCEEEEEeC-CCCCccHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHH
Confidence 3445555555554442321 124446666664 322222334555678888888877655444322 222233
Q ss_pred HHHhhhhhcCCCcEEEEEcCC
Q 037501 101 MASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 101 ~~~~~~~~~~~~d~IV~vGGD 121 (438)
.+.+. ....|+||+++.+
T Consensus 108 i~~l~---~~~vdGiIi~~~~ 125 (346)
T PRK10401 108 IEVLI---RQRCNALIVHSKA 125 (346)
T ss_pred HHHHH---hcCCCEEEEeCCC
Confidence 44442 2579999999754
No 313
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=30.79 E-value=1.8e+02 Score=25.85 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=27.0
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG 95 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ 95 (438)
+.|.|+++|-||.. +--.+.-.|...|.++-++.++..+
T Consensus 2 i~v~s~kgG~GKTt-~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKST-VAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhH-HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 57889999988753 2235667777788888777665444
No 314
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=30.72 E-value=2.3e+02 Score=26.48 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
|.....-...+++.++..+++.|+++.+..+. . ..+..+.+. ...+|+||+.+.+-
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~-~~~~~~~l~---~~~vdgii~~~~~~ 62 (261)
T cd06272 7 PSVSRVALTELVTGINQAISKNGYNMNVSITP--S-LAEAEDLFK---ENRFDGVIIFGESA 62 (261)
T ss_pred cCCCchhHHHHHHHHHHHHHHcCCEEEEEecc--c-HHHHHHHHH---HcCcCEEEEeCCCC
Confidence 55443333455566788888888887776654 2 223344432 25799999987653
No 315
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=30.70 E-value=45 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEeecCCChHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNA 43 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~ 43 (438)
+.+.|.+.+.++...|++.|+.
T Consensus 82 ~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 82 AEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5799999999999999999975
No 316
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.49 E-value=2.5e+02 Score=27.34 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=40.5
Q ss_pred CCC-CCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcC--CCcEEEEEcCCchHHHHHHhhhh
Q 037501 61 PMS-GKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELS--SYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 61 P~s-G~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~--~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
|.. ...--..+.+.++..+++.|+++.+..++...+ ..++.+.+. .. +.|+||+.+.+-...+++.-+..
T Consensus 7 ~~~~~~~~~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~---~~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (305)
T cd06324 7 PGKSDEPFWNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTIL---QRPDKPDALIFTNEKSVAPELLRLAEG 80 (305)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHH---HhccCCCEEEEcCCccchHHHHHHHHh
Confidence 543 333333444557788888888877665543221 223344442 24 79999998876545566665544
No 317
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=30.41 E-value=52 Score=34.54 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.8
Q ss_pred CCCcEEEEEcCCchHHHHHH
Q 037501 110 SSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvN 129 (438)
..+|+||+-|||-|+..+-.
T Consensus 167 ~~~D~vv~wGgd~ti~~ir~ 186 (399)
T PF05893_consen 167 QQADAVVAWGGDETIRAIRQ 186 (399)
T ss_pred HHCCEEEEeCCHHHHHHHHH
Confidence 56899999999999998876
No 318
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.41 E-value=2.2e+02 Score=26.53 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=37.7
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.|++ |.....--..+.+.++..+++.|+++.+..+.+... ..++++.+. ..+.|+|++.+++-+
T Consensus 3 ~~v~-~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~vdgiii~~~~~~ 67 (267)
T cd06284 3 LVLV-PDIANPFFSEILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLR---RKQADGIILLDGSLP 67 (267)
T ss_pred EEEE-CCCCCccHHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHH---HcCCCEEEEecCCCC
Confidence 3444 555443334455668888999998876665543211 223333332 357899999887643
No 319
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=30.40 E-value=4e+02 Score=23.87 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=54.4
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC---hHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG---QAFDV 100 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~---ha~~~ 100 (438)
..+...+.+.....++.+.+.- .+++.+|..+.. .......+..+..+++.++++....+.... ....+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~------~~~i~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
T cd01391 102 FRVGPDNEQAGEAAAEYLAEKG------WKRVALIYGDDG--AYGRERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQAL 173 (269)
T ss_pred EEEcCCcHHHHHHHHHHHHHhC------CceEEEEecCCc--chhhHHHHHHHHHHHhcCcEEEeccccCCCccccHHHH
Confidence 4455555656666666555542 578888876553 222233445777777777554322221111 22333
Q ss_pred HHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 101 MASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 101 ~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+.+.. ..+.++|++. +|.....++..+...
T Consensus 174 ~~~l~~--~~~~~~i~~~-~~~~a~~~~~~~~~~ 204 (269)
T cd01391 174 LQLLKA--APKPDAIFAC-NDEMAAGALKAAREA 204 (269)
T ss_pred HHHHhc--CCCCCEEEEc-CchHHHHHHHHHHHc
Confidence 333321 1145666665 558888888888765
No 320
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=30.34 E-value=5.2e+02 Score=25.16 Aligned_cols=83 Identities=6% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-C-CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-Q-RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..+++.+|..|.. .......++-.+..|++++++...+.. . ....+.+.++++.+.....+++|+| .+|.+--.++
T Consensus 177 G~~~I~~i~~~~~-~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~Ai~~-~~D~~A~g~~ 254 (327)
T TIGR02417 177 HADEFWYLGAQPE-LSVSRDRLAGFRQALKQATLEVEWVYGGNYSRESGYQMFAKLCARLGRLPQALFT-TSYTLLEGVL 254 (327)
T ss_pred CCCeEEEEeCccc-chhHHHHHHHHHHHHHHcCCChHhEEeCCCChHHHHHHHHHHHhcCCCCCcEEEE-cCcHHHHHHH
Confidence 4578888875532 122233344466777777876433332 2 1234455555553211113677666 5788888888
Q ss_pred Hhhhhcc
Q 037501 129 NGFLSSR 135 (438)
Q Consensus 129 NGL~~~~ 135 (438)
+.|....
T Consensus 255 ~al~~~g 261 (327)
T TIGR02417 255 DYMLERP 261 (327)
T ss_pred HHHHHcC
Confidence 8887654
No 321
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=30.33 E-value=2e+02 Score=27.26 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=31.2
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+...|.+.|+++.++..... ...+... .++.+|+||+.||.|...+
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~-~~~~~~~-----~~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDP-RLADEAA-----VAAQFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCc-CHHHHHH-----hhcCCCEEEECCCCCChhh
Confidence 466777888998887755432 1222211 1357999999999998764
No 322
>PRK09739 hypothetical protein; Provisional
Probab=30.16 E-value=2.2e+02 Score=26.39 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=25.2
Q ss_pred CcEEEEEE-cCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 52 PKNLLIFI-HPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 52 pk~llviv-NP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
++++++|. +|..+ +...++.+.+...+++++.+++++
T Consensus 3 mmkiliI~~sp~~~-s~s~~l~~~~~~~~~~~g~~v~~~ 40 (199)
T PRK09739 3 SMRIYLVWAHPRHD-SLTAKVAEAIHQRAQERGHQVEEL 40 (199)
T ss_pred CceEEEEEcCCCCC-CcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35566554 78764 555667777888888888777655
No 323
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=30.09 E-value=2.2e+02 Score=29.84 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT 91 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T 91 (438)
....+++.|.+.+.... .+++-|+|.+..|.+. .+ +.++|++.|+++..+-.
T Consensus 150 ~~~~Y~~~l~~~~~~~~--~~~lkVvvD~~nG~~~--~~---~~~ll~~lg~~v~~in~ 201 (434)
T cd05802 150 ARGRYIEFLKSTFPKDL--LSGLKIVLDCANGAAY--KV---APEVFRELGAEVIVINN 201 (434)
T ss_pred hHHHHHHHHHHhcCccc--cCCCEEEEECCCchHH--HH---HHHHHHHcCCeEEEecC
Confidence 45778888888875322 3578999998877543 33 45566777887765543
No 324
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.99 E-value=4.5e+02 Score=24.30 Aligned_cols=97 Identities=9% Similarity=0.003 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcce-eEEEEEeC-CCChHHHHHHHhhhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV-NTKVIVTQ-RAGQAFDVMASTKNK 107 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi-~~~v~~T~-~~~ha~~~~~~~~~~ 107 (438)
+.+.....++.|.+ ...+++.++-.+..........++-.+..++..+. ...+..+. ....+.+.++.+.+
T Consensus 98 ~~~~~~~~~~~l~~------~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 170 (259)
T cd01542 98 DYGAGYELGEYLAQ------QGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEAAQELLE- 170 (259)
T ss_pred cHHHHHHHHHHHHH------cCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHHHHHHhc-
Confidence 34445555555544 13467776643322211222334456677777776 22222222 22344555544422
Q ss_pred hcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 108 ELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
... .++|++.+ |.+...+++.|....
T Consensus 171 ~~~-~~~i~~~~-d~~a~g~~~~l~~~g 196 (259)
T cd01542 171 PQP-PDAIVCAT-DTIALGAMKYLQELG 196 (259)
T ss_pred CCC-CCEEEEcC-cHHHHHHHHHHHHcC
Confidence 112 56665555 888888999887654
No 325
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=29.96 E-value=3.5e+02 Score=26.01 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=39.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+.+.+.+++ |.....--..+++.++..+.+.|+++.+..+.... ...++.+.+. ..++|+|++++-+
T Consensus 34 ~~~~ig~v~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vDgiIi~~~~ 101 (309)
T PRK11041 34 ESRTILVIV-PDICDPFFSEIIRGIEVTAAEHGYLVLIGDCAHQNQQEKTFVNLII---TKQIDGMLLLGSR 101 (309)
T ss_pred CCcEEEEEe-CCCcCccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---HcCCCEEEEecCC
Confidence 344555555 44333333344556888888888877666554422 1234444443 3579999998764
No 326
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.86 E-value=3e+02 Score=25.87 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=40.9
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
|.-...--..+++.++..+++.|+++.+..+....+ ..+..+.+. ..+.|+|++.+++....+++.-+.
T Consensus 7 ~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgii~~~~~~~~~~~~~~~~ 76 (269)
T cd06281 7 SDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFE---QRRMDGIIIAPGDERDPELVDALA 76 (269)
T ss_pred cCCccccHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH---HcCCCEEEEecCCCCcHHHHHHHH
Confidence 433333334555668888888898877766654332 234444443 257999999987643334444443
No 327
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=29.85 E-value=2.5e+02 Score=27.67 Aligned_cols=74 Identities=9% Similarity=-0.071 Sum_probs=42.6
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
.+.++.|.....--..+++.++..+++.|+++.+..+....+ -.++.+.+. ..+.|+|++.+++-.- +.+.-|.
T Consensus 61 ~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~-~~~~~l~ 135 (341)
T PRK10703 61 SIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLA---QKRVDGLLVMCSEYPE-PLLAMLE 135 (341)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEecCCCCH-HHHHHHH
Confidence 444445665443334455668888888898877665543211 123334432 3578999999876432 4555443
No 328
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.80 E-value=2.6e+02 Score=26.27 Aligned_cols=60 Identities=5% Similarity=-0.021 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhh
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFL 132 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~ 132 (438)
.+++.++..+++.|+++.++.++.... ..+..+.+. ..++|+||+.+.|.. ..+.+.-+.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~~dgiii~~~~~~~~~~~l~~~~ 77 (277)
T cd06319 16 IMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAI---DKGVSGIIISPTNSSAAVTLLKLAA 77 (277)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH---hcCCCEEEEcCCchhhhHHHHHHHH
Confidence 344557788888888877665543211 122333332 367999998887754 345554443
No 329
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=29.71 E-value=1.6e+02 Score=29.26 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcce-eEEEEEeCCCChHHH--HHHHhhhhhcCCCcEEEEEcCCc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV-NTKVIVTQRAGQAFD--VMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi-~~~v~~T~~~~ha~~--~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
.+|- .+.|-|.++.-. ..+-+....+|+..|+ +++++.++...+|.. +.++ +...++|...|||=
T Consensus 50 ~~~A-~i~I~paas~ep-~~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~-----v~~a~gIfftGGDQ 117 (293)
T COG4242 50 GEKA-YIVIIPAASREP-RAIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAK-----VENATGIFFTGGDQ 117 (293)
T ss_pred CCce-EEEEEecCccCh-hhhccchhhHHHHhccceeEEEeeecccccchHHHHHH-----HHhCceEEEecCcc
Confidence 4444 777788887654 2233455568888776 566776766555532 3333 35689999999994
No 330
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=29.70 E-value=1.7e+02 Score=26.19 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcce---eEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc----CCch--
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV---NTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG----GDGF-- 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi---~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG----GDGT-- 123 (438)
.|+.|+.--+-.. -..+..+.....|...|+ +++++.--.+-+.--.++.+.+ .++||+||+.| |+=.
T Consensus 4 ~ri~IV~s~~n~~-i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~--~~~~Davi~lG~VI~G~T~H~ 80 (144)
T PF00885_consen 4 LRIAIVVSRFNEE-ITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAE--SGRYDAVIALGCVIRGETDHF 80 (144)
T ss_dssp EEEEEEEESTTHH-HHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHH--CSTESEEEEEEEEE--SSTHH
T ss_pred CEEEEEEEeccHH-HHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhc--ccCccEEEEeccccCCCchHH
Confidence 4566666433211 122334456677888887 6777766666665555666643 46799999999 3333
Q ss_pred ---HHHHHHhhhhc
Q 037501 124 ---FNEILNGFLSS 134 (438)
Q Consensus 124 ---v~EVvNGL~~~ 134 (438)
-+++.+||+.-
T Consensus 81 ~~v~~~v~~gl~~l 94 (144)
T PF00885_consen 81 EYVANAVSRGLMDL 94 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777653
No 331
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=29.45 E-value=5.5e+02 Score=25.19 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=43.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..|++.++.+..+- +....+.++..|++.|+++.... .....+....+.++. ..+.|.|++.+-..-.-.++
T Consensus 131 g~~~v~i~~~~~~~---g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~---~~~pd~v~~~~~~~~~~~~~ 204 (333)
T cd06358 131 GARRWYLIGNDYVW---PRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIA---ASGADAVLSTLVGQDAVAFN 204 (333)
T ss_pred CCCeEEEEeccchh---hHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHH---HcCCCEEEEeCCCCchHHHH
Confidence 45788877665442 22344567788899998764322 222233334444443 25689887765543333566
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
..+...
T Consensus 205 ~~~~~~ 210 (333)
T cd06358 205 RQFAAA 210 (333)
T ss_pred HHHHHc
Confidence 666543
No 332
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.06 E-value=4.7e+02 Score=28.97 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK 107 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~ 107 (438)
.++.+-.+...+++..... ..|-=+-|=.++ |.....+..+.+..+.+..|+++-.+.|-+.-.-.++...+...
T Consensus 8 PKt~~g~~nL~~~~~rl~~---~~P~FisVT~gA--gGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a 82 (565)
T PLN02540 8 PKTEEGVDNLFERMDRMVA---HGPLFCDITWGA--GGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETI 82 (565)
T ss_pred CCCchHHHHHHHHHHHHhc---cCCCEEEeCCCC--CCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHH
Confidence 3455556666666655531 234333333343 32233333444444444559998888887665544554444333
Q ss_pred hcCCCcEEEEEcCCch
Q 037501 108 ELSSYDGVLAVGGDGF 123 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGT 123 (438)
...+.+-|+|+.||-.
T Consensus 83 ~~~GIrNILALrGDpp 98 (565)
T PLN02540 83 KSNGIQNILALRGDPP 98 (565)
T ss_pred HHCCCCEEEEECCCCC
Confidence 3467899999999975
No 333
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.01 E-value=5.8e+02 Score=25.30 Aligned_cols=76 Identities=9% Similarity=-0.005 Sum_probs=43.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..+++.++.-. .. -+....+.++..+++.|+++...+ .....+...+++++. ..+.|.|+..+--+-.-.++
T Consensus 143 ~~~~v~~l~~~-~~--~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~---~~~~d~v~~~~~~~~~~~~~ 216 (347)
T cd06340 143 PLKTVALVHED-TE--FGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLK---AANPDAILPASYTNDAILLV 216 (347)
T ss_pred CCceEEEEecC-ch--HhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHH---hcCCCEEEEcccchhHHHHH
Confidence 45777777642 22 233456778888999998764222 222345555555553 35788777655444444455
Q ss_pred Hhhh
Q 037501 129 NGFL 132 (438)
Q Consensus 129 NGL~ 132 (438)
..+.
T Consensus 217 ~~~~ 220 (347)
T cd06340 217 RTMK 220 (347)
T ss_pred HHHH
Confidence 5543
No 334
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.89 E-value=2.4e+02 Score=21.85 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
...+...|+..|+.+++..... ......+.+ +..++..++++|.+-
T Consensus 17 a~~~~~~Lr~~g~~v~~d~~~~--~~~~~~~~a---~~~g~~~~iiig~~e 62 (91)
T cd00860 17 AKEVAKKLSDAGIRVEVDLRNE--KLGKKIREA---QLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHHCCCEEEEECCCC--CHHHHHHHH---HHcCCCEEEEECcch
Confidence 3467788888999887644322 222222222 346899999999764
No 335
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=28.72 E-value=59 Score=24.75 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHH
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNA 43 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~ 43 (438)
.+.+.|.+++.++++.|++.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhc
Confidence 46799999999999999999875
No 336
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=28.62 E-value=4.7e+02 Score=25.68 Aligned_cols=97 Identities=5% Similarity=-0.073 Sum_probs=53.3
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVM 101 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~ 101 (438)
+.+...+...+..+.+.+.+. ..|++.++. +...-+ ....+.++..+++.|+++.... .....+...++
T Consensus 113 f~~~~~~~~~~~~~~~~~~~~------~~~~v~~i~-~~~~~g--~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v 183 (334)
T cd06327 113 FHWAYDTYMLANGTAPALVKA------GGKKWFFLT-ADYAFG--HSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYL 183 (334)
T ss_pred EEccCChHHHHHHHHHHHHHh------cCCeEEEEe-cchHHh--HHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHH
Confidence 334445555555555544332 246676554 444333 3556778888999998764222 22233455555
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
.++. ..+.|+|++.+..+-.-.++..+.
T Consensus 184 ~~l~---~~~~d~v~~~~~~~~~~~~~~~~~ 211 (334)
T cd06327 184 LQAQ---ASGADVLVLANAGADTVNAIKQAA 211 (334)
T ss_pred HHHH---hCCCCEEEEeccchhHHHHHHHHH
Confidence 5554 256888887765554444555443
No 337
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=28.52 E-value=2.5e+02 Score=26.10 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
++.+.++..+++.|+++.+..+++. ....+..+++. ..++|+||+++.+.+ ..++..+.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~~dgii~~~~~~~-~~~~~~~~ 75 (259)
T cd01542 16 RTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLA---RQKVDGIILLATTIT-DEHREAIK 75 (259)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---hcCCCEEEEeCCCCC-HHHHHHHh
Confidence 4555678888888988877665432 11223445443 368999999987654 24444443
No 338
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=28.49 E-value=2.4e+02 Score=26.43 Aligned_cols=62 Identities=8% Similarity=0.000 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHh-cceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhhc
Q 037501 70 RTWETVAPIFVR-AKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLSS 134 (438)
Q Consensus 70 ~~~~~v~~~l~~-agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~~ 134 (438)
.+.+.+...+++ .++++.+..+.. .....+..+.+. ..+.|+||+.+.|.. ..+++.-|...
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~~~~~~~~l~~~ 80 (272)
T cd06301 16 LLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFI---AQGVDAIIVVPVDTAATAPIVKAANAA 80 (272)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEecCchhhhHHHHHHHHHC
Confidence 344457777777 777766654432 112223333332 247899999988854 34556555443
No 339
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.47 E-value=5.5e+02 Score=24.83 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHHhh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMASTK 105 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~~~ 105 (438)
..+......+++.+.+.. ..+++.+|+...+.- +....+.++..+++.|+++.... .....+...+++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~-----~~~~v~ii~~~~~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~ 188 (334)
T cd06347 116 FIDPFQGTVMAKFATENL-----KAKKAAVLYDNSSDY--SKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIK 188 (334)
T ss_pred CCcHHHHHHHHHHHHHhc-----CCcEEEEEEeCCCch--hHHHHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHH
Confidence 344444555555544332 236788877432222 22344567788888887664322 223345556666654
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
..+.|.|++.+....+-.++..+.
T Consensus 189 ---~~~~d~i~~~~~~~~~~~~~~~~~ 212 (334)
T cd06347 189 ---AKNPDVIFLPGYYTEVGLIAKQAR 212 (334)
T ss_pred ---hcCCCEEEEcCchhhHHHHHHHHH
Confidence 256788877766655555555443
No 340
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.45 E-value=5.6e+02 Score=25.73 Aligned_cols=79 Identities=6% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhhh
Q 037501 34 CEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKNK 107 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~~ 107 (438)
++...+.|.+.+... .++..+|.+|. .|...+...|.+ .....++.|++++.+.-... .+..+..+++.+
T Consensus 12 A~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~- 87 (284)
T PRK14190 12 AKEKREQLKEEVVKLKEQGIVPGLAVIL---VGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA- 87 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC-
Confidence 444444455444321 12333454443 255556677764 77888999999987754322 233344444432
Q ss_pred hcCCCcEEEE
Q 037501 108 ELSSYDGVLA 117 (438)
Q Consensus 108 ~~~~~d~IV~ 117 (438)
.+..|+|++
T Consensus 88 -D~~V~GIlv 96 (284)
T PRK14190 88 -DPRINGILV 96 (284)
T ss_pred -CCCCCEEEE
Confidence 245677764
No 341
>PRK07564 phosphoglucomutase; Validated
Probab=28.45 E-value=2.3e+02 Score=30.93 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV 90 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~ 90 (438)
....++.|.+.+.-+..+.+.+-|++.|..|.+. .-+.++|++.|+++..+.
T Consensus 206 ~~~Y~~~l~~~i~~~~i~~~~lkIvvD~~~G~~~-----~~~~~ll~~lG~~v~~l~ 257 (543)
T PRK07564 206 VADYVEDLENVFDFDAIRKAGLRLGVDPLGGATG-----PYWKAIAERYGLDLTVVN 257 (543)
T ss_pred HHHHHHHHHHhhChhhhhcCCceEEEecCCCCcH-----HHHHHHHHHcCCcEEEeC
Confidence 4567777777664322233568899999888664 245567788888766543
No 342
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=28.38 E-value=5.6e+02 Score=24.88 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
+.+.+.+++ |.-...-...+.+.+...+.+.|+.+.+..|.... ...+..+.+. ....|+||+.+.+.
T Consensus 58 ~~~~Ig~i~-~~~~~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~---~~~vdGvIi~~~~~ 126 (311)
T TIGR02405 58 SDKVVAVIV-SRLDSPSENLAVSGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQ---KRNVDGVILFGFTG 126 (311)
T ss_pred CCCEEEEEe-CCcccccHHHHHHHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHH---hcCCCEEEEeCCCC
Confidence 445677777 43222223345667888899999887665554322 2223344442 25689999998653
No 343
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=28.35 E-value=1.4e+02 Score=26.30 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=36.8
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
.+...|++.|+++....+- +++..++.+.+.+ ..+++|.||..||=|. +.|++..+.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v-~Dd~~~i~~~l~~-~~~~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIV-PDDPEEIREILRK-AVDEADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred HHHHHHHHCCCeEEEEeec-CCCHHHHHHHHHH-HHhCCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 5888899999876544332 3344455554432 2357999999999775 456666554
No 344
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.33 E-value=6.2e+02 Score=25.51 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhc----cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC---CChHHHHHHHh
Q 037501 33 TCEMWVNRVNAFLNME----VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR---AGQAFDVMAST 104 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~----~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~ 104 (438)
.++...+.|.+.+... ..+| +|.+|.= |...+...|. ......++.|++++.+.-.. ..+..+..+++
T Consensus 16 iA~~i~~~l~~~i~~l~~~~g~~P-~Laii~v---g~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~L 91 (287)
T PRK14176 16 LAKKIEAEVRSGVERLKSNRGITP-GLATILV---GDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSL 91 (287)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCC-eEEEEEE---CCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555554432 2234 4444432 4445667776 47788899999998765432 22333444444
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+..|+|++
T Consensus 92 N~--D~~V~GIlv 102 (287)
T PRK14176 92 NK--RKDVHGILL 102 (287)
T ss_pred hC--CCCCCeEEE
Confidence 32 245677764
No 345
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=28.33 E-value=1.4e+02 Score=27.46 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhhc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLSS 134 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~~ 134 (438)
..+...|...|+++..+.+- +++..++.+.+.. ..+.+|.||+.||=|. .-|++..++.+
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v-~Dd~~~I~~~l~~-~~~~~dlVIttGG~G~t~~D~t~ea~~~~~~~ 86 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVV-GDDEDRIAEALRR-ASERADLVITTGGLGPTHDDLTREAVAKAFGR 86 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHH-HHhCCCEEEECCCCCCCCCChHHHHHHHHhCC
Confidence 35888899999887544333 3344444444432 2357899999999664 55666666554
No 346
>PRK09492 treR trehalose repressor; Provisional
Probab=28.28 E-value=5.5e+02 Score=24.78 Aligned_cols=80 Identities=8% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.-+++.+|-.+......+....+-.+..+++.|+++.....+. ...+.+.++++.. ..+|+|+|.. |-+--.+++
T Consensus 174 G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~~~ai~~~~-D~~A~g~~~ 249 (315)
T PRK09492 174 GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLT---PETTALVCAT-DTLALGASK 249 (315)
T ss_pred CCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhh---cCCCEEEEcC-cHHHHHHHH
Confidence 4467777642322222222334456777888888765433221 2344555555432 3578777555 888888888
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.|...
T Consensus 250 al~~~ 254 (315)
T PRK09492 250 YLQEQ 254 (315)
T ss_pred HHHHc
Confidence 88765
No 347
>PRK08250 glutamine amidotransferase; Provisional
Probab=28.13 E-value=91 Score=30.10 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=34.7
Q ss_pred EEEEEEc-CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 54 NLLIFIH-PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 54 ~llvivN-P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
|++||.| |+-+- ..+.+.++.+|++++++.... +.. + . .+.+.||+||+.||=.+.+
T Consensus 2 ~i~vi~h~~~e~~-------g~~~~~~~~~g~~~~~~~~~~-g~~--~----p-~~~~~~d~vii~GGp~~~~ 59 (235)
T PRK08250 2 RVHFIIHESFEAP-------GAYLKWAENRGYDISYSRVYA-GEA--L----P-ENADGFDLLIVMGGPQSPR 59 (235)
T ss_pred eEEEEecCCCCCc-------hHHHHHHHHCCCeEEEEEccC-CCC--C----C-CCccccCEEEECCCCCChh
Confidence 4666654 44333 245677788999888765332 221 1 1 1246799999999966544
No 348
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.04 E-value=93 Score=27.68 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=29.7
Q ss_pred eEEEEEEecCCCCCCceEEEEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 3 RFTVHSFQKSKTQPNLWVLAVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 3 ~~~~~~~~~~~~~~~~w~~~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
||.|++-. + ...|++.+++++.=+.|++.|...|.++
T Consensus 82 kFeiw~~~--~-------~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 82 KFEIWYNA--R-------EEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred EEEEEeCC--C-------CcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 67777721 1 2579999999999999999999998754
No 349
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=28.03 E-value=1e+02 Score=31.25 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHhhhcc--CCCcEEEEEEcCCCCCCC--hhhhHHHHHHHHH---hcceeEEEEEeCCCChHHHHHHH
Q 037501 31 LPTCEMWVNRVNAFLNMEV--GRPKNLLIFIHPMSGKGS--GRRTWETVAPIFV---RAKVNTKVIVTQRAGQAFDVMAS 103 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~--~rpk~llvivNP~sG~g~--~~~~~~~v~~~l~---~agi~~~v~~T~~~~ha~~~~~~ 103 (438)
.+....-+..+.+.+.... .+||=.+.=+||++|.+- +.+--+.|.|..+ +.|+.+. .+--|-.+-..
T Consensus 154 ~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~-----GP~paDt~F~~ 228 (298)
T PF04166_consen 154 KERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAEGIDVF-----GPYPADTVFGK 228 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEE-----EEE-HHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhCCCceE-----CCCccHHhhhc
Confidence 3444555566666665522 344433444899998753 3232334666554 4566653 22223222222
Q ss_pred hhhhhcCCCcEEEEE
Q 037501 104 TKNKELSSYDGVLAV 118 (438)
Q Consensus 104 ~~~~~~~~~d~IV~v 118 (438)
. ....||+||++
T Consensus 229 ~---~~~~fD~vvaM 240 (298)
T PF04166_consen 229 A---NRGKFDAVVAM 240 (298)
T ss_dssp H---HHTT-SEEEES
T ss_pred c---hhccCCEEEEe
Confidence 2 23789999975
No 350
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=27.95 E-value=2.4e+02 Score=31.02 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
++.+..+| +++++.+.-....+++..++++++ .+++.|| |||++.+.+.-+.
T Consensus 122 ~~~~~~~l---~~~i~~~~~~~~~e~~~~v~~lk~---~G~~~vv---G~~~~~~~A~~~g 173 (538)
T PRK15424 122 LVAFQKTF---NLRIEQRSYVTEEDARGQINELKA---NGIEAVV---GAGLITDLAEEAG 173 (538)
T ss_pred HHHHHHHh---CCceEEEEecCHHHHHHHHHHHHH---CCCCEEE---cCchHHHHHHHhC
Confidence 34556666 567777777778899998888864 6788777 7788887765543
No 351
>PRK00170 azoreductase; Reviewed
Probab=27.90 E-value=2.5e+02 Score=25.68 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=24.7
Q ss_pred cEEEEEE-cCCCCCCChhhhHHHHHHHHHhc--ceeEEEEE
Q 037501 53 KNLLIFI-HPMSGKGSGRRTWETVAPIFVRA--KVNTKVIV 90 (438)
Q Consensus 53 k~llviv-NP~sG~g~~~~~~~~v~~~l~~a--gi~~~v~~ 90 (438)
+|+++|. +|....+...++.+.+...++++ +.+++++.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4555554 67664466667777777778777 77776553
No 352
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=27.85 E-value=1.6e+02 Score=22.96 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=26.0
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++...|+..|+.+++.... ... -..+...+..++..++++|.
T Consensus 21 ~~~~~~Lr~~g~~v~~~~~~--~~~---~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 21 QKLLNALLANGIRVLYDDRE--RKI---GKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHCCCEEEecCCC--cCH---hHHHHHHHhCCCCEEEEECC
Confidence 35777888899887764432 111 11221123467899999996
No 353
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=27.75 E-value=66 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+...|++.|.++.++....... + .++..+|+||+-||.+.+.+
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~--~-------~~~~~~dgvIl~Gg~~~~~~ 56 (181)
T cd01742 13 LIARRVRELGVYSEILPNTTPLE--E-------IKLKNPKGIILSGGPSSVYE 56 (181)
T ss_pred HHHHHHHhcCceEEEecCCCChh--h-------hcccCCCEEEECCCcccccc
Confidence 46777888898877765543211 1 13468999999999886543
No 354
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.53 E-value=6.5e+02 Score=25.35 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeC-C--CChHHHHHHHhhhh
Q 037501 32 PTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQ-R--AGQAFDVMASTKNK 107 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~-~--~~ha~~~~~~~~~~ 107 (438)
+.++...+.|.+.+.....+|+=..|.+ |...+...|.+ .....++.|++++.+.-. . ..+..+..+++.+
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~- 84 (287)
T PRK14173 10 PAAEAVYAELRARLAKLPFVPHLRVVRL----GEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA- 84 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC-
Confidence 3566777777777765444565444444 44556677764 778889999999876543 2 2223344444432
Q ss_pred hcCCCcEEEE
Q 037501 108 ELSSYDGVLA 117 (438)
Q Consensus 108 ~~~~~d~IV~ 117 (438)
.+..|+|++
T Consensus 85 -D~~V~GIlv 93 (287)
T PRK14173 85 -DPEVDGILV 93 (287)
T ss_pred -CCCCCEEEE
Confidence 245677765
No 355
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.40 E-value=6.3e+02 Score=25.43 Aligned_cols=79 Identities=13% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhh
Q 037501 34 CEMWVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKN 106 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~ 106 (438)
++...+.|.+.+.... ++..+|.+|.= |...+...|. ......++.|++++.+.-... .+..+..+++.+
T Consensus 10 A~~i~~~l~~~v~~l~~~~g~~P~LaiI~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 10 SYKIEKDLKNKIQILTAQTGKRPKLAVILV---GKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4444444554443321 23335555542 4555667776 477888999999987654322 233344444432
Q ss_pred hhcCCCcEEEE
Q 037501 107 KELSSYDGVLA 117 (438)
Q Consensus 107 ~~~~~~d~IV~ 117 (438)
.+..|+|++
T Consensus 87 --D~~V~GIlv 95 (285)
T PRK14191 87 --DQNIDGILV 95 (285)
T ss_pred --CCCCCEEEE
Confidence 245677764
No 356
>PRK08284 precorrin 6A synthase; Provisional
Probab=27.36 E-value=4.4e+02 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=18.4
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.+-+++++++||-+|......|+.
T Consensus 102 ~g~~Vv~l~~GDP~~ys~~~~l~~ 125 (253)
T PRK08284 102 DGGTGAFLVWGDPSLYDSTLRILE 125 (253)
T ss_pred CCCcEEEEeCCCcchhhHHHHHHH
Confidence 456899999999998866555544
No 357
>PLN02837 threonine-tRNA ligase
Probab=27.36 E-value=3.3e+02 Score=30.34 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
....+|...|+.+|+.+++. .. .. +-+++...+..++..+|++|-+
T Consensus 530 ~~A~~Ia~~Lr~~GirVev~-~~--~s---lgkkir~A~~~gip~~IiIG~~ 575 (614)
T PLN02837 530 EYCKEVVAKLKAKGIRAEVC-HG--ER---LPKLIRNAETQKIPLMAVVGPK 575 (614)
T ss_pred HHHHHHHHHHHHCCCEEEEe-CC--CC---HHHHHHHHHHcCCCEEEEEcch
Confidence 33457889999999999883 32 11 2233333345789999999954
No 358
>PRK09273 hypothetical protein; Provisional
Probab=27.29 E-value=1.3e+02 Score=29.01 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=40.8
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--------CCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--------QRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--------~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
-++|-.|-..+-.-+++.|...|+..|+++.=+=+ .++.-+..++..+. ....|..|.+-|=|
T Consensus 4 ali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~---~g~~d~GIliCGTG 74 (211)
T PRK09273 4 ALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLN---SKAVDFVVTGCGTG 74 (211)
T ss_pred EeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHH---cCCCCEEEEEcCcH
Confidence 35676666555556889999999999987754332 34444555555443 25577777766666
No 359
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.18 E-value=6.1e+02 Score=25.49 Aligned_cols=80 Identities=8% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhh
Q 037501 33 TCEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKN 106 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~ 106 (438)
.++...+.|.+.+... .+...+|.+|.= |...+...|. ......++.|++++.+.-... .+..+..+++.
T Consensus 11 ia~~i~~~~~~~v~~l~~~g~~p~Laii~v---g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN- 86 (286)
T PRK14175 11 IAKDYRQGLQDQVEALKEKGFTPKLSVILV---GNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLN- 86 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh-
Confidence 4555556666655432 123334544432 4555667776 467888899999987754332 22333444442
Q ss_pred hhcCCCcEEEE
Q 037501 107 KELSSYDGVLA 117 (438)
Q Consensus 107 ~~~~~~d~IV~ 117 (438)
+.+..|+|++
T Consensus 87 -~d~~V~GIiv 96 (286)
T PRK14175 87 -NDDSVSGILV 96 (286)
T ss_pred -CCCCCCEEEE
Confidence 2245677775
No 360
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.11 E-value=3e+02 Score=26.46 Aligned_cols=59 Identities=7% Similarity=-0.014 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHH---HHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhhc
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAF---DVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLSS 134 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~---~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~~ 134 (438)
.+.+...+++.|+++.++.+. ..... +..+.+. ..+.|+||+.+.|-. ..++++-+...
T Consensus 18 ~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~l~~~~---~~~~dgiii~~~~~~~~~~~i~~~~~~ 80 (294)
T cd06316 18 VRGAKDEFAKLGIEVVATTDA-QFDPAKQVADIETTI---SQKPDIIISIPVDPVSTAAAYKKVAEA 80 (294)
T ss_pred HHHHHHHHHHcCCEEEEecCC-CCCHHHHHHHHHHHH---HhCCCEEEEcCCCchhhhHHHHHHHHc
Confidence 334677788888877644322 22222 3333332 357899999887754 35666666544
No 361
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=27.08 E-value=2.3e+02 Score=29.49 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=47.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC------ChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA------GQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~------~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..++++|+.|+.=. .-..+++...|+.+++.+..++-... .+..++...+.+...++-+.||++|| |++
T Consensus 32 ~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG-Gvi 106 (360)
T COG0337 32 AGRKVAIVTDETVA----PLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG-GVI 106 (360)
T ss_pred cCCeEEEEECchhH----HHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC-hHH
Confidence 34589999996543 22346899999999988744432222 22333444444445677789999998 787
Q ss_pred HHHH
Q 037501 125 NEIL 128 (438)
Q Consensus 125 ~EVv 128 (438)
-.+.
T Consensus 107 gDla 110 (360)
T COG0337 107 GDLA 110 (360)
T ss_pred HHHH
Confidence 7766
No 362
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.04 E-value=2.3e+02 Score=30.24 Aligned_cols=87 Identities=17% Similarity=0.156 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc
Q 037501 37 WVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD 113 (438)
Q Consensus 37 w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d 113 (438)
=+++|..++.... ..+...-|+|=|.+..- ....-.+...|+.+|+.+++....+. ... ++...+..+.+
T Consensus 315 GveRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~--~~~a~~la~~LR~~g~~~~~~~~~r~--~k~---q~k~A~~~g~~ 387 (429)
T COG0124 315 GVERLILALEEEGKEDPVETRVDVYVVPLGEDA--EPEALKLAQKLRAAGISVEVDYSGRK--LKK---QFKYADKLGAR 387 (429)
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCEEEEEcCchh--HHHHHHHHHHHHHcCCcEEEEecccc--HHH---HHHHHHHCCCC
Confidence 3566766665442 11223333333333321 23334688889999999998877764 222 22222456889
Q ss_pred EEEEEcCCchHHHHHHhhhhc
Q 037501 114 GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 114 ~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+|++|.| |+.+|-+.-
T Consensus 388 ~~viiGe~----E~~~g~v~v 404 (429)
T COG0124 388 FAVILGED----ELANGVVTV 404 (429)
T ss_pred EEEEEcch----HHhcCCEEE
Confidence 99999997 777776553
No 363
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=27.00 E-value=5.9e+02 Score=24.73 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+.+.+.|++ |.-..---..+++.++..+++.|+.+.+..+.... ...++.+.+. ..+.|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~---~~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLL---SKQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEeCCC
Confidence 444566655 54322222344455777788888877665443221 2223334443 2579999998754
No 364
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.99 E-value=2.9e+02 Score=25.83 Aligned_cols=62 Identities=10% Similarity=-0.052 Sum_probs=37.1
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHH--HHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAF--DVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~--~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
.|++ |.....--..+.+.+...+++.|+++.+..+++ .+.. ++.+.+. ..+.|+||+++-+-
T Consensus 3 g~i~-p~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~-~~~~~~~~i~~l~---~~~~dgiii~~~~~ 66 (263)
T cd06280 3 GLIV-ADIRNPFFTAVSRAVEDAAYRAGLRVILCNTDE-DPEKEAMYLELME---EERVTGVIFAPTRA 66 (263)
T ss_pred EEEe-cccccccHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHH---hCCCCEEEEeCCCC
Confidence 3444 444333334455668888889998887665543 3322 2334443 35789999998653
No 365
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=26.97 E-value=1.7e+02 Score=31.60 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEE
Q 037501 36 MWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGV 115 (438)
Q Consensus 36 ~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~I 115 (438)
.-+..|-+.|.+ +-+++-+-|+|.+|+=-+ +.-=+|.++++.|+.+.. ++++ +.+.+++|.+
T Consensus 325 ~~v~el~~~L~~---~G~~V~faIHPVAGRMPG-----HMNVLLAEa~VpYd~~~e---------mdei-N~~f~~~Dv~ 386 (463)
T PF02233_consen 325 HAVAELADLLEE---RGVEVKFAIHPVAGRMPG-----HMNVLLAEANVPYDIVKE---------MDEI-NPDFPDTDVV 386 (463)
T ss_dssp HHHHHHHHHHHH---TT-EEEEEE-TTSSSSTT-----HHHHHHHHCT--GGGEEE---------HHHH-GGGGGG-SEE
T ss_pred HHHHHHHHHHHh---CCCEEEEEeccccCCCCC-----cceEEEEecCCCHHHHhh---------hhhc-ccchhcCCEE
Confidence 334444444432 567888888888886544 233367888887764431 1222 2356789999
Q ss_pred EEEcCCchHHHHHHhhhhc
Q 037501 116 LAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 116 V~vGGDGTv~EVvNGL~~~ 134 (438)
+++|- |+|+|-....
T Consensus 387 lViGA----NDvVNPaA~~ 401 (463)
T PF02233_consen 387 LVIGA----NDVVNPAARE 401 (463)
T ss_dssp EEES-----SGGG-CHHCC
T ss_pred EEecc----ccccCchhcc
Confidence 99996 4556665554
No 366
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=26.95 E-value=3.8e+02 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhc---ceeEEEEEeCCCChHHHHHHHhhhh--hcCCCcEEEE-EcCCc
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRA---KVNTKVIVTQRAGQAFDVMASTKNK--ELSSYDGVLA-VGGDG 122 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~a---gi~~~v~~T~~~~ha~~~~~~~~~~--~~~~~d~IV~-vGGDG 122 (438)
.+++++.|.-. .++.+.++.++.++..+ ++++++.+.+... ..+.+++..+. +....+.+|. .||--
T Consensus 27 ~~vilv~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d-~~~~~~~v~~~i~~~~~~~v~vnlsgG~R 99 (203)
T TIGR01884 27 DLVILVKSPIE-DGARRAVESLRAIISDLGGNLVEGTIKEIELKD-VPSILRQMSDIIKEEREPRVIINLSGGMR 99 (203)
T ss_pred cEEEEEcCCCc-hHHHHHHHHHHHHHHHhccCCCcceEEEEecCC-HHHHHHHHHHHHHhcccCcEEEEcCCCch
Confidence 46666777653 55667778888888876 5677777766544 23444443321 2233344433 45555
No 367
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.93 E-value=5.1e+02 Score=23.94 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhccee--EEEEEeCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVN--TKVIVTQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~--~~v~~T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+++.+|..+..+........+-....++..++. ..++.+.. ...+.+.++++... ...+++|+|. +|.+...
T Consensus 115 g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ai~~~-~d~~a~g 192 (267)
T cd06283 115 GYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEIDDEDADELDERLRQLLNK-PKKKTAIFAA-NGLILLE 192 (267)
T ss_pred CCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEecccchHHHHHHHHHHHcC-CCCCCEEEEc-CcHHHHH
Confidence 45788888765543222222233466777777743 23332222 23455555555321 1236666655 5777778
Q ss_pred HHHhhhhcc
Q 037501 127 ILNGFLSSR 135 (438)
Q Consensus 127 VvNGL~~~~ 135 (438)
+++.|..+.
T Consensus 193 ~~~~l~~~g 201 (267)
T cd06283 193 VLKALKELG 201 (267)
T ss_pred HHHHHHHcC
Confidence 888887654
No 368
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=26.77 E-value=3e+02 Score=27.11 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=52.1
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC----CCChHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ----RAGQAFDVM 101 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~----~~~ha~~~~ 101 (438)
+...+.+.....++.+.... +..+++.+|+ +... -+....+.++..+++.|..++++... ...+...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~----~~~~~v~~l~-~~~~--~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v 188 (346)
T cd06330 116 TRNSTIMDAVAGALYAAKLD----KKAKTWATIN-PDYA--YGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEI 188 (346)
T ss_pred ecCChHHHHHHHHHHHHHhC----cCccEEEEEC-CchH--HHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHH
Confidence 34455555555555544332 1346666665 3322 22344567888888886544443322 123444445
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+++. ..+.|.|++++..+-.-.++..+...
T Consensus 189 ~~i~---~~~~d~ii~~~~~~~~~~~~~~~~~~ 218 (346)
T cd06330 189 TALL---AAKPDAIFSSLWGGDLVTFVRQANAR 218 (346)
T ss_pred HHHH---hcCCCEEEEecccccHHHHHHHHHhc
Confidence 5553 25788888876444444566555443
No 369
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=26.63 E-value=2e+02 Score=31.32 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+..+..+.+.+-|+|.|..|.+. .-+.++|++.|+++..+
T Consensus 206 ~~~~Y~~~l~~~i~~~~i~~~~lkVvvD~~~Ga~~-----~~~~~il~~lG~~v~~l 257 (543)
T TIGR01132 206 LVQPYVDGLADIVDMAAIQKAGLRLGVDPLGGSGI-----DYWKRIAEKYNLNLTLV 257 (543)
T ss_pred cHHHHHHHHHHhhhhhhhhcCCceEEEeCCCCCcH-----HHHHHHHHHcCCCEEEE
Confidence 45678888877765322233578999999888664 23556778888876544
No 370
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=26.46 E-value=1.3e+02 Score=27.18 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHhcceeEEEEEe----CCCChHHHHHHHhhhhhcCCCc-EEEEEcCCc
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVT----QRAGQAFDVMASTKNKELSSYD-GVLAVGGDG 122 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T----~~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDG 122 (438)
..+-+.|...|+..|+++.-+-| .++.-|..+++...+ ..+| +|+++ |=|
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~---~e~~~GIliC-GtG 66 (141)
T TIGR01118 12 KRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQK---DEQNLGIVID-AYG 66 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHc---CCCceEEEEc-CCC
Confidence 45556799999999987754433 566667777766643 4455 44444 444
No 371
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.43 E-value=3.2e+02 Score=24.55 Aligned_cols=60 Identities=7% Similarity=0.062 Sum_probs=36.1
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHH------HHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDV------MASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~------~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+++.+ ..+|.+++++-.+......++ .+.+.+.++.++|.|+++-+|--+|..+-.+...
T Consensus 28 ka~~L-l~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~ 93 (157)
T PRK06719 28 KASGL-KDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHD 93 (157)
T ss_pred HHHHH-HhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHHHHHHHH
Confidence 44444 457778877732221111111 0112223577899999999999999999766543
No 372
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=26.41 E-value=3.9e+02 Score=24.88 Aligned_cols=73 Identities=14% Similarity=-0.032 Sum_probs=42.4
Q ss_pred EEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh--HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 57 IFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ--AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 57 vivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h--a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
||+ |.....-...+++.++..+++.|+++.+..+..... ..++.+.+ ...++|+||+.+++....+.++-+..
T Consensus 4 vi~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l---~~~~vdgiii~~~~~~~~~~~~~~~~ 78 (270)
T cd01545 4 LLY-DNPSPGYVSEIQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALL---QRSRVDGVILTPPLSDNPELLDLLDE 78 (270)
T ss_pred EEE-cCCCcccHHHHHHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHH---HHCCCCEEEEeCCCCCccHHHHHHHh
Confidence 444 333333344556678888888998877665543221 22233323 23578999999987543455655543
No 373
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=26.18 E-value=2.3e+02 Score=26.31 Aligned_cols=62 Identities=6% Similarity=-0.042 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
..+++.++..+++.|+.+.+..++.. ....++.+++. ..++|+|++++-+.. ..+.+.-+..
T Consensus 15 ~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~dgii~~~~~~~~~~~~l~~l~~ 78 (268)
T cd06323 15 VTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLI---TRGVDAIIINPTDSDAVVPAVKAANE 78 (268)
T ss_pred HHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHH---HcCCCEEEEcCCChHHHHHHHHHHHH
Confidence 45556688888888888776655431 12234444443 357899998765433 2355555543
No 374
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.14 E-value=2.3e+02 Score=30.69 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+..+..+.+++-|+|.|..|.+. . -+.++|++.|+++..+
T Consensus 189 ~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~--~---~~~~ll~~lG~~v~~l 240 (522)
T cd05801 189 FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASV--P---YWQPIAEKYGLNLTVV 240 (522)
T ss_pred cHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccH--H---HHHHHHHHcCCCEEEE
Confidence 45667777777664322233578999999888764 2 3556678888876544
No 375
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.01 E-value=2.4e+02 Score=26.24 Aligned_cols=60 Identities=7% Similarity=-0.037 Sum_probs=35.2
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
|.....--..+.+.++..+++.|+.+.+..++.... ..++.+.+. ..++|+|++.+.|..
T Consensus 7 ~~~~~~~~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~~dgiii~~~~~~ 67 (267)
T cd06283 7 ADITNPFSSLVLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLL---AYQVDGLIVNPTGNN 67 (267)
T ss_pred cCCccccHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH---HcCcCEEEEeCCCCC
Confidence 443333334455568888888888776655543211 123333332 357899999988764
No 376
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=25.90 E-value=1.8e+02 Score=27.50 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=44.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH---------hhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS---------TKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~---------~~~~~~~~~d~IV~vGGDGT 123 (438)
|+++|| |.|+.. ..+++.++ .+|.+++|+-.+-.....++++. ....++.+++.||++-||--
T Consensus 10 k~vlVv-----GgG~va--~rk~~~Ll-~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ 81 (205)
T TIGR01470 10 RAVLVV-----GGGDVA--LRKARLLL-KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE 81 (205)
T ss_pred CeEEEE-----CcCHHH--HHHHHHHH-HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH
Confidence 566666 545422 34565555 47777777654433333344322 01134678899999999998
Q ss_pred HHHHHHhhhhc
Q 037501 124 FNEILNGFLSS 134 (438)
Q Consensus 124 v~EVvNGL~~~ 134 (438)
+|+-+-.....
T Consensus 82 ln~~i~~~a~~ 92 (205)
T TIGR01470 82 LNRRVAHAARA 92 (205)
T ss_pred HHHHHHHHHHH
Confidence 88876655543
No 377
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=25.86 E-value=1.8e+02 Score=24.62 Aligned_cols=52 Identities=27% Similarity=0.236 Sum_probs=34.1
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+||+- |..|..+++.+.+...|...|++++++...... .. ++..+|.||++.
T Consensus 2 ~Iiy~--S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~-~~---------~l~~~d~iilgs 53 (140)
T TIGR01753 2 LIVYA--SMTGNTEEMANIIAEGLKEAGAEVDLLEVADAD-AE---------DLLSYDAVLLGC 53 (140)
T ss_pred EEEEE--CCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCC-HH---------HHhcCCEEEEEc
Confidence 45553 345677788888999999889888876544321 11 234588887775
No 378
>PHA02518 ParA-like protein; Provisional
Probab=25.80 E-value=1.6e+02 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMA 102 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~ 102 (438)
+++.|.|+++|-||.. +--.+.-.|.+.|.++-++-....+.+..+..
T Consensus 1 ~ii~v~~~KGGvGKTT-~a~~la~~la~~g~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 1 KIIAVLNQKGGAGKTT-VATNLASWLHADGHKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CEEEEEcCCCCCCHHH-HHHHHHHHHHhCCCeEEEEeCCCCCChHHHHH
Confidence 3678999999998853 22356667888898888888877776666543
No 379
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=25.79 E-value=1.3e+02 Score=27.96 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhhcc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLSSR 135 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~~~ 135 (438)
+-+..+|+++|+++ ...+-=+++-..+...+.+...+.+|+|+.-||=|. =-|.+..++.++
T Consensus 30 ~~l~~~L~~ag~~~-~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKe 96 (169)
T COG0521 30 PLLVELLEEAGHNV-AAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKE 96 (169)
T ss_pred hHHHHHHHHcCCcc-ceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhcc
Confidence 45888999999876 222222233333333332211123899999999885 126666666653
No 380
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=25.66 E-value=83 Score=29.94 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=12.6
Q ss_pred cCCCcEEEEEcCCch
Q 037501 109 LSSYDGVLAVGGDGF 123 (438)
Q Consensus 109 ~~~~d~IV~vGGDGT 123 (438)
.+.||+|++.||.|.
T Consensus 88 ~~~~dal~ipGG~~~ 102 (221)
T cd03141 88 PSDYDAIFIPGGHGP 102 (221)
T ss_pred HhHceEEEECCCccc
Confidence 457999999999875
No 381
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.60 E-value=6.9e+02 Score=25.33 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhhc---cCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC---CChHHHHHHHh
Q 037501 32 PTCEMWVNRVNAFLNME---VGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR---AGQAFDVMAST 104 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~---~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~ 104 (438)
+.++.+.+.|.+.+... ..+|+=..|.++ ...+...|. ......++.|++++.+.-.. ..+..+..+++
T Consensus 11 ~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 11 AAAARVLAQVREDVRTLKAAGIEPALAVILVG----NDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAEL 86 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666666665442 124433344444 444566776 46678889999998775432 22333444444
Q ss_pred hhhhcCCCcEEEEE
Q 037501 105 KNKELSSYDGVLAV 118 (438)
Q Consensus 105 ~~~~~~~~d~IV~v 118 (438)
.+ .+..|+|++-
T Consensus 87 N~--D~~V~GIlvq 98 (301)
T PRK14194 87 NA--DPSVNGILLQ 98 (301)
T ss_pred cC--CCCCCeEEEe
Confidence 32 2467777753
No 382
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=25.58 E-value=2.3e+02 Score=26.40 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 68 GRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 68 ~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
-..+++.++..+++.|+.+.+..+.... ...++.+.+. ..++|+||+++.+.+ .+++.-|
T Consensus 14 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~-~~~~~~l 74 (268)
T cd06298 14 FAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLL---AKQVDGIIFMGGKIS-EEHREEF 74 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHH---HhcCCEEEEeCCCCc-HHHHHHH
Confidence 3445566778888888887776654322 2234444442 257999999986543 3455544
No 383
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.52 E-value=2.9e+02 Score=30.19 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
++.+..+| +++++.+.-....++...++++.+ .+++.|| ||++..+.+.
T Consensus 112 ~~~~~~ll---~~~i~~~~~~~~~e~~~~~~~l~~---~G~~~vi---G~~~~~~~A~ 160 (526)
T TIGR02329 112 LRRFQAAF---NLDIVQRSYVTEEDARSCVNDLRA---RGIGAVV---GAGLITDLAE 160 (526)
T ss_pred HHHHHHHh---CCceEEEEecCHHHHHHHHHHHHH---CCCCEEE---CChHHHHHHH
Confidence 34566666 567777777788889998888864 6788777 7777776654
No 384
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=25.45 E-value=1.3e+02 Score=28.31 Aligned_cols=51 Identities=29% Similarity=0.406 Sum_probs=33.1
Q ss_pred HHHHHHHhcce-eEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 74 TVAPIFVRAKV-NTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 74 ~v~~~l~~agi-~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.++.=+++-|+ +++++. ++|-+... ++..+|.|++-|| |++.+|++.+..+
T Consensus 73 ~~~~N~~~fg~~n~~vv~----g~Ap~~L~-----~~~~~daiFIGGg-~~i~~ile~~~~~ 124 (187)
T COG2242 73 LIERNAARFGVDNLEVVE----GDAPEALP-----DLPSPDAIFIGGG-GNIEEILEAAWER 124 (187)
T ss_pred HHHHHHHHhCCCcEEEEe----ccchHhhc-----CCCCCCEEEECCC-CCHHHHHHHHHHH
Confidence 34444444443 345553 44545443 2347999999888 9999999998775
No 385
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.42 E-value=5e+02 Score=26.09 Aligned_cols=61 Identities=16% Similarity=0.314 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcEEEE
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
+|+=..|.++ ...+...|. ......++.|++++.+.-.. ..+..+..+++.+ .+..|+|++
T Consensus 31 ~P~La~I~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~--D~~V~GIiv 95 (282)
T PRK14180 31 TPKLVAIIVG----NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN--DSSVHAILV 95 (282)
T ss_pred CCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC--CCCCCeEEE
Confidence 4544444454 444566776 47788899999998774332 2344455555532 345677775
No 386
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.39 E-value=4.2e+02 Score=24.92 Aligned_cols=59 Identities=3% Similarity=-0.102 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhc-----ceeEEEEEeCCCChHH---HHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 70 RTWETVAPIFVRA-----KVNTKVIVTQRAGQAF---DVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 70 ~~~~~v~~~l~~a-----gi~~~v~~T~~~~ha~---~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
.+.+.++..+++. ++++.+..+. ++.. ++.+.+. ..+.|+|++.+.|.. +.+.++.+..
T Consensus 16 ~~~~gi~~~a~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~---~~~vDgiii~~~~~~~~~~~i~~~~~ 83 (274)
T cd06311 16 GIVWHAQAAAKKLEAAYPDVEFILVTAS--NDTEQQNAQQDLLI---NRKIDALVILPFESAPLTQPVAKAKK 83 (274)
T ss_pred HHHHHHHHHHHHhhhhCCCeEEEEEcCC--CCHHHHHHHHHHHH---HcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 3344566666665 4554444333 3332 3333332 257899999998865 4667766544
No 387
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.38 E-value=1.8e+02 Score=27.89 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS 103 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~ 103 (438)
+++.|.|.++|-||.- +--.+.-.|.+.|.++-++-+...+++..+...
T Consensus 2 ~iI~v~n~KGGvGKTT-~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 2 KLLTFCSFKGGAGKTT-ALMGLCAALASDGKRVALFEADENRPLTRWKEN 50 (231)
T ss_pred eEEEEECCCCCccHHH-HHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHh
Confidence 5788999999998853 233577778888999999999888888777654
No 388
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=25.34 E-value=83 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA 94 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~ 94 (438)
||+++.+. |...+.+. ..+...|.+.|+++.++.|+.+
T Consensus 1 k~i~l~vt---Gs~~~~~~-~~~l~~L~~~g~~v~vv~S~~A 38 (129)
T PF02441_consen 1 KRILLGVT---GSIAAYKA-PDLLRRLKRAGWEVRVVLSPSA 38 (129)
T ss_dssp -EEEEEE----SSGGGGGH-HHHHHHHHTTTSEEEEEESHHH
T ss_pred CEEEEEEE---CHHHHHHH-HHHHHHHhhCCCEEEEEECCcH
Confidence 67888887 65555553 3455556677999999999864
No 389
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=25.34 E-value=2.2e+02 Score=28.87 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.5
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
...+++-||++-.+|+++ ..+.++++.+++++|.++.++......-++ +.+ . ..|..|.+|
T Consensus 210 ~~A~~vGIlvgTl~~q~~-~~~~~~l~~ll~~~gkk~y~i~~~~in~~k-----L~n--f-~iD~fV~~a 270 (308)
T TIGR03682 210 LDAKKFGILVSTKKGQRR-PELAEELKKLLEELGKEALLILLDNISPDQ-----LRN--L-DFDAYVNTA 270 (308)
T ss_pred hhCCeEEEEEEccCcCCC-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHH-----Hhc--C-CcCEEEEcc
Confidence 356889999999999887 567888999999999998888777765542 222 3 377776554
No 390
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=25.24 E-value=2.9e+02 Score=28.50 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFD 99 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~ 99 (438)
.+.+++.|.|.++|-||..-. -.+.-.|...|.++-++-+...+.+..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a-~nLA~~La~~G~rVLlID~DpQ~~ls~ 149 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTA-AHLAQYLALRGYRVLAIDLDPQASLSA 149 (387)
T ss_pred CCceEEEEEccCCCcCHHHHH-HHHHHHHHhcCCCEEEEecCCCCCHHH
Confidence 344799999999999985322 256667888898888888887666544
No 391
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.01 E-value=2.5e+02 Score=25.86 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-C--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-Q--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
++.||. |+..-..+.++...+|++.|+.|++.+- - .++--.++++++. ..++++||+.-| | ..=+-|
T Consensus 4 ~V~IIM----GS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~---~~g~~viIAgAG-g--AAHLPG 73 (162)
T COG0041 4 KVGIIM----GSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAE---ERGVKVIIAGAG-G--AAHLPG 73 (162)
T ss_pred eEEEEe----cCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHH---HCCCeEEEecCc-c--hhhcch
Confidence 455555 5555556667788999999999986643 2 2445566776654 256665554322 2 223445
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
++..
T Consensus 74 mvAa 77 (162)
T COG0041 74 MVAA 77 (162)
T ss_pred hhhh
Confidence 5544
No 392
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=24.91 E-value=1.2e+02 Score=24.97 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=32.7
Q ss_pred CCCCChhhhH--HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 63 SGKGSGRRTW--ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 63 sG~g~~~~~~--~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
+|.|-+.... +.++..+++.|+++++......+-..++ .+.+....|.||++|...
T Consensus 7 c~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l----~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 7 CPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENEL----TAEDIAEADAVILAADVP 64 (96)
T ss_pred CCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcC----CHHHHhhCCEEEEecCCC
Confidence 3445554443 5799999999998776543332211112 112345678888887654
No 393
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=24.86 E-value=2.2e+02 Score=29.08 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC------CCh----HHHHHHHhhhhhcCCCcEEEE-EcC
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR------AGQ----AFDVMASTKNKELSSYDGVLA-VGG 120 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~------~~h----a~~~~~~~~~~~~~~~d~IV~-vGG 120 (438)
....+=||-|.++-. +.+..++....|+..|+++..-..-. ++. |.|+.+.+. .+..+.|++ .||
T Consensus 9 ~gd~I~iIaPSs~~~-~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~---d~~vk~Il~~rGG 84 (313)
T COG1619 9 EGDEIGIIAPSSGAT-ATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFS---DPDVKAILCVRGG 84 (313)
T ss_pred CCCEEEEEecCcccc-hHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhc---CCCCeEEEEcccC
Confidence 345778899999877 56677888999999998776543211 222 233333322 245666665 599
Q ss_pred CchHHHHHHhh
Q 037501 121 DGFFNEILNGF 131 (438)
Q Consensus 121 DGTv~EVvNGL 131 (438)
+|+- +++..|
T Consensus 85 ygs~-rlLp~l 94 (313)
T COG1619 85 YGSN-RLLPYL 94 (313)
T ss_pred CChh-hhhhhc
Confidence 9963 444444
No 394
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=24.75 E-value=3e+02 Score=25.68 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..+.+.++..+++.|+++.+..+.... ...++.+.+. ....|+||+.+.|..+
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~~dgiii~~~~~~~ 68 (265)
T cd06291 15 SELARAVEKELYKKGYKLILCNSDNDPEKEREYLEMLR---QNQVDGIIAGTHNLGI 68 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCCccHHHHHHHHHHHH---HcCCCEEEEecCCcCH
Confidence 445556778888888887666554321 1223334433 2578999999887543
No 395
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.58 E-value=73 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+++.|.+.|+++.+.|++.|+.+
T Consensus 78 rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 78 KTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred ceEEEEeCCHHHHHHHHHHHHhh
Confidence 57888889999999999999865
No 396
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.55 E-value=7.2e+02 Score=24.90 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCCC---ChHHHHHHHhhhhhc
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQRA---GQAFDVMASTKNKEL 109 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~~---~ha~~~~~~~~~~~~ 109 (438)
++.-.+.|.+.+.....+| +|.+|.= |...+...|.+ .....++.|++++.+.-... .+..+..+++.+ .
T Consensus 9 a~~i~~~~~~~v~~lg~~P-~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~--D 82 (279)
T PRK14178 9 SEKRLELLKEEIIESGLYP-RLATVIV---GDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNE--D 82 (279)
T ss_pred HHHHHHHHHHHHHHhCCCC-eEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC--C
Confidence 4444455555554333344 4544432 45556677764 67888999999887643322 233344444432 2
Q ss_pred CCCcEEEE
Q 037501 110 SSYDGVLA 117 (438)
Q Consensus 110 ~~~d~IV~ 117 (438)
+..|+|++
T Consensus 83 ~~V~GIlv 90 (279)
T PRK14178 83 PDINGILV 90 (279)
T ss_pred CCCCeEEE
Confidence 45677765
No 397
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=24.51 E-value=4.2e+02 Score=26.94 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCCcEEEEEE--c-CCCCCCChhhhH-HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 50 GRPKNLLIFI--H-PMSGKGSGRRTW-ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 50 ~rpk~llviv--N-P~sG~g~~~~~~-~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.++.++.||. | +..|+ -.... ..++..|++.|+++.....- +++..++.+.+.+....++|.||+-||=|.
T Consensus 157 ~r~~rv~II~TG~Ev~~G~--i~D~~~~~l~~~L~~~G~~v~~~~iv-~Dd~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGR--IEDKFGPVLRARLAALGVELVEQVIV-PHDEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred cCCCEEEEEEcCCcCCCCc--EEEhHHHHHHHHHHHCCCEEEEEEEc-CCCHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 4666777776 4 33333 22333 35888899999876543322 344444544443211134899999998653
No 398
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=24.45 E-value=3.4e+02 Score=25.27 Aligned_cols=50 Identities=14% Similarity=0.036 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 71 TWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 71 ~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+.+.++..++..|+++.+..++... ...+..+.+. ..+.|+||+.+.|..
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~ 67 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLA---QKRVDGLLVMCSEYD 67 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH---HcCCCEEEEecCCCC
Confidence 3445777788888877666554321 1223344442 357899999998764
No 399
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=24.44 E-value=90 Score=35.75 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=26.5
Q ss_pred EEEeeeccchhhhhhhhh--------hhc--ccCchHHHHHHHHHHH
Q 037501 272 TASFSGYGFYGDVISESE--------KYR--WMGPKRYDYAGTKVFL 308 (438)
Q Consensus 272 f~~~~~~G~~adV~~~se--------~~r--~lG~~rY~~~~~~~l~ 308 (438)
+-|.+|+|+||.|.-+.. |.| -...+.|-+-|-|.|+
T Consensus 615 MNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLL 661 (1099)
T KOG1170|consen 615 MNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELL 661 (1099)
T ss_pred hccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHH
Confidence 446799999999988753 333 2345677777888887
No 400
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=24.36 E-value=3.1e+02 Score=29.12 Aligned_cols=53 Identities=8% Similarity=0.025 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE
Q 037501 32 PTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV 90 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~ 90 (438)
+....+++.|.+.+... -+.+++-|+|.+..|.+. . -+..+|++.|+++..+-
T Consensus 167 ~~~~~Y~~~l~~~id~~-i~~~~~kVvvD~~nG~~~--~---~~~~ll~~LG~~v~~l~ 219 (465)
T PRK14317 167 ELLDDYRDALLESLPDR-VNLQGVKIVLDLAWGAAV--A---CAPEVFKALGAEVICLH 219 (465)
T ss_pred ChHHHHHHHHHHhcCcc-cccCCCEEEEECCCchHH--H---HHHHHHHHcCCeEEEEe
Confidence 34667777787776422 133578999998887553 2 34566777788775543
No 401
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.36 E-value=2.8e+02 Score=25.89 Aligned_cols=77 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC-CCChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ-RAGQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFL 132 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~ 132 (438)
+.-++-|.....--..+.+.++..++..|+++.+..++ ......+..+.+.. .+.|+||+.+-|.. +.+.++-+.
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~---~~vdgiii~~~~~~~~~~~~~~~~ 77 (267)
T cd06322 1 VIGASLLTQQHPFYIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFIT---KKVDAIVLSPVDSKGIRAAIAKAK 77 (267)
T ss_pred CeeEeecCcccHHHHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHH---cCCCEEEEcCCChhhhHHHHHHHH
Q ss_pred hc
Q 037501 133 SS 134 (438)
Q Consensus 133 ~~ 134 (438)
..
T Consensus 78 ~~ 79 (267)
T cd06322 78 KA 79 (267)
T ss_pred HC
No 402
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=24.32 E-value=1.5e+02 Score=29.38 Aligned_cols=64 Identities=9% Similarity=0.043 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC----hHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG----QAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~----ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
+++-|+++ +|.||. .+.+.+.+.|...| .+-++...+-+ ..+|-.+.. ..+.+.++.+++++++
T Consensus 2 ~~i~i~G~-~gSGKT-TLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~----~aGa~~v~~~s~~~~~ 69 (274)
T PRK14493 2 KVLSIVGY-KATGKT-TLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHF----DAGADVVYGLTDGEWV 69 (274)
T ss_pred cEEEEECC-CCCCHH-HHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHH----HCCCcEEEEecCCeEE
Confidence 57888998 477764 45568888999988 66555544311 122222211 1345566666666653
No 403
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.30 E-value=2.8e+02 Score=26.23 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH-hhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS-TKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~-~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..+++.+...+++.|+++.+..+.......+..++ +. ....|+||+.+.+=. .+.++-|
T Consensus 15 ~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~---~~~vdgvi~~~~~~~-~~~~~~l 74 (269)
T cd06297 15 RRLLEGIEGALLEQRYDLALFPLLSLARLKRYLESTTL---AYLTDGLLLASYDLT-ERLAERR 74 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHH---hcCCCEEEEecCccC-hHHHHHH
Confidence 34455688888888988877766643333333332 32 357899999987532 2444444
No 404
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=24.16 E-value=4.6e+02 Score=27.79 Aligned_cols=53 Identities=13% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+... +-+.+-|++.|..|.+. .++..+..+|++.|++++++
T Consensus 151 ~~~~Yi~~l~~~id~~--~~~~lkVvvD~~~G~~~--~~~~~l~~~l~~lG~~v~v~ 203 (456)
T PRK15414 151 LRDAYVDHLFGYINVK--NLTPLKLVINSGNGAAG--PVVDAIEARFKALGAPVELI 203 (456)
T ss_pred cHHHHHHHHHHhcccc--cCCCCEEEEECCCCcch--hhHHHHHHHHHhcCCCeEEE
Confidence 3567777777776422 12578999999888654 55666766788888755543
No 405
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.15 E-value=5.8e+02 Score=23.66 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeCC-CChHHHHHHHhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQR-AGQAFDVMASTK 105 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~~-~~ha~~~~~~~~ 105 (438)
+.+....-++.|.+. ..+++.+|..+......+...++-....|++.++.+. +..+.. ...+.+.++++.
T Consensus 100 ~~~~~~~~~~~l~~~------g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (268)
T cd06273 100 NREAGRLAARHLIAL------GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLL 173 (268)
T ss_pred hHHHHHHHHHHHHHC------CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHH
Confidence 344455555555442 4578888875543322233444557788888876542 222221 222344444442
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
+ .....|+|++ ++|.+...++..|....
T Consensus 174 ~-~~~~~~ai~~-~~~~~a~~~~~~l~~~g 201 (268)
T cd06273 174 E-QPPRPTAVIC-GNDVLALGALYEARRLG 201 (268)
T ss_pred c-CCCCCCEEEE-cChHHHHHHHHHHHHcC
Confidence 2 1134677765 77888888888886653
No 406
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=24.09 E-value=7.3e+02 Score=25.74 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCC---CChHHHHHHHhhh
Q 037501 34 CEMWVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKN 106 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~ 106 (438)
++...+.|.+.+.... ++..+|.+|.= |...+...|.+ -....++.|++++.+.-.. ..+..+..+++.+
T Consensus 65 A~~i~~~lk~~v~~l~~~~g~~P~LaiIlv---GddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 65 AEEIRTKIASEVRKMKKAVGKVPGLAVVLV---GQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCeEEEEEe---CCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566666666654321 23334544442 55666677864 6788899999998765332 2233444444432
Q ss_pred hhcCCCcEEEE
Q 037501 107 KELSSYDGVLA 117 (438)
Q Consensus 107 ~~~~~~d~IV~ 117 (438)
.+..|+|++
T Consensus 142 --D~~V~GIlV 150 (345)
T PLN02897 142 --DTSIHGILV 150 (345)
T ss_pred --CCCCCEEEE
Confidence 246788776
No 407
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=24.03 E-value=7.3e+02 Score=25.91 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhcc---CCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEe-CCCC--hHHHHHHHhh
Q 037501 33 TCEMWVNRVNAFLNMEV---GRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVT-QRAG--QAFDVMASTK 105 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~---~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T-~~~~--ha~~~~~~~~ 105 (438)
.++...+.|.+.+.... ++..+|.+|.= |...+...|. ......++.|++++.+.- +... +..++.+++.
T Consensus 81 iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlv---G~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN 157 (364)
T PLN02616 81 VAKKIRDEITIEVSRMKESIGVVPGLAVILV---GDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFN 157 (364)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHc
Confidence 45566666666554321 23334444432 4445667776 467888999999876642 2222 2333444443
Q ss_pred hhhcCCCcEEEE
Q 037501 106 NKELSSYDGVLA 117 (438)
Q Consensus 106 ~~~~~~~d~IV~ 117 (438)
+ .+..|+|++
T Consensus 158 ~--D~~V~GIlV 167 (364)
T PLN02616 158 N--DPSVHGILV 167 (364)
T ss_pred C--CCCCCEEEE
Confidence 2 245677775
No 408
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=23.95 E-value=87 Score=34.59 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCC--CChhhhHH-HHHHHHHhcceeEEEEEeCC-----CChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 53 KNLLIFIHPMSGK--GSGRRTWE-TVAPIFVRAKVNTKVIVTQR-----AGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG~--g~~~~~~~-~v~~~l~~agi~~~v~~T~~-----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
.+++-|.|=..|= ++-..+-+ .+..+....|.+. +-|.+ +.+-..+.+.+. .-+.|++|++|||||.
T Consensus 129 ~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dl--LGS~R~k~~~~e~~~~~~~~l~---~l~Id~LViIGGddS~ 203 (568)
T PLN02251 129 SVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDM--ICSGRDKIETPEQFKQAEETAT---KLDLDGLVVIGGDDSN 203 (568)
T ss_pred CEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceE--ecccCCCcCCHHHHHHHHHHHH---HcCCCEEEEeCCchHH
Confidence 4677777755552 22222222 3556665566422 22222 223333444433 2468999999999987
Q ss_pred HHH
Q 037501 125 NEI 127 (438)
Q Consensus 125 ~EV 127 (438)
..+
T Consensus 204 ~~A 206 (568)
T PLN02251 204 TNA 206 (568)
T ss_pred HHH
Confidence 654
No 409
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.91 E-value=2.9e+02 Score=29.18 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhccC--CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE
Q 037501 33 TCEMWVNRVNAFLNMEVG--RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV 88 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~--rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v 88 (438)
....+++.|.+.+..... +.+++-|++.|..|.+. .+ +.++|+..|+++..
T Consensus 150 ~~~~Y~~~l~~~~~~~~~~~~~~~lkVvvd~~~G~~~--~~---~~~ll~~lg~~v~~ 202 (445)
T cd05803 150 AIAEHIDKVLALVDVDVIKIRERNFKVAVDSVNGAGG--LL---IPRLLEKLGCEVIV 202 (445)
T ss_pred hHHHHHHHHHhhcccchhhhccCCCEEEEECCCCcHH--HH---HHHHHHHcCCEEEE
Confidence 346677777776543221 24579999999888653 22 45678888887643
No 410
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=23.82 E-value=3.2e+02 Score=26.03 Aligned_cols=60 Identities=7% Similarity=-0.027 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcceeEEEEEeCC-C-ChH---HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 72 WETVAPIFVRAKVNTKVIVTQR-A-GQA---FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~-~-~ha---~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+.++..++..|+++.+..+.. . .++ .++.+.+. ..+.|+||+.+.+....+.+.-+...
T Consensus 19 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 19 IASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEAL---QSKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHH---HcCCCEEEEcCCchhhHHHHHHHHhC
Confidence 3456777888888777654332 1 122 22333332 36799999988766555666665543
No 411
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=23.81 E-value=3.9e+02 Score=28.27 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+... -+.+++-|++.+..|.+. . -+.++|++.|+++..+
T Consensus 156 ~~~~Y~~~l~~~id~~-i~~~~lkVvvD~~~G~~~--~---~~~~ll~~lG~~v~~i 206 (448)
T PRK14315 156 AHGRYIEFAKRTLPRD-LRLDGLRVVVDCANGAAY--K---VAPEALWELGAEVITI 206 (448)
T ss_pred hHHHHHHHHHHhcccc-cccCCCEEEEECCCchHH--H---HHHHHHHHcCCeEEEe
Confidence 3566777777777532 344688899998887542 2 3456677778876544
No 412
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=23.76 E-value=6.7e+02 Score=24.27 Aligned_cols=76 Identities=7% Similarity=0.006 Sum_probs=40.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
..|++.+|+.-..| ....+.+...+++.|+++......... +...++.++. ..+.|+||+.+-....-.++.
T Consensus 126 ~w~~vaii~~~~~~----~~~l~~~~~~~~~~g~~v~~~~~~~~~~d~~~~l~~i~---~~~~d~Vi~~~~~~~~~~i~~ 198 (324)
T cd06368 126 GWRKFVYIYDSDEG----LLRLQELLDALSPKGIQVTVRRLDDDTDMYRPLLKEIK---REKERRIILDCSPERLKEFLE 198 (324)
T ss_pred CCCEEEEEECCcHh----HHHHHHHHHhhccCCceEEEEEecCCchHHHHHHHHHh---hccCceEEEECCHHHHHHHHH
Confidence 46889999864443 223444444555566665543322222 3455555553 246788877664444445555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.+..
T Consensus 199 qa~~ 202 (324)
T cd06368 199 QAVE 202 (324)
T ss_pred HHHH
Confidence 4443
No 413
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.76 E-value=4.6e+02 Score=24.25 Aligned_cols=60 Identities=7% Similarity=0.008 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.+.+.+...++..|+++.+..+.... ...++.+.+. ..+.|+|++++-+-+ .+.++-+..
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~~~-~~~~~~~~~ 76 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLL---SRRPAGLILTGLEHT-ERTRQLLRA 76 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHH---HcCCCEEEEeCCCCC-HHHHHHHHh
Confidence 44456778888888888776664322 1233444443 357999999998765 345554443
No 414
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.74 E-value=2e+02 Score=24.87 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.+.|+.||.+++- +++...|+..|++++++ +-+.+-...++.+-+. --||| +.+++|-
T Consensus 2 ~itiy~~p~C~t~------rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~------------~~g~~-~~~li~t 60 (117)
T COG1393 2 MITIYGNPNCSTC------RKALAWLEEHGIEYTFIDYLKTPPSREELKKILS------------KLGDG-VEELINT 60 (117)
T ss_pred eEEEEeCCCChHH------HHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHH------------HcCcc-HHHHHHh
Confidence 4678889999853 35677799999999876 3344444444443332 13566 6666653
No 415
>PRK00536 speE spermidine synthase; Provisional
Probab=23.70 E-value=47 Score=32.92 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=12.9
Q ss_pred CcEEEEEcCC-chHHHHH
Q 037501 112 YDGVLAVGGD-GFFNEIL 128 (438)
Q Consensus 112 ~d~IV~vGGD-GTv~EVv 128 (438)
-.++|+-||| ||+.||+
T Consensus 74 k~VLIiGGGDGg~~REvL 91 (262)
T PRK00536 74 KEVLIVDGFDLELAHQLF 91 (262)
T ss_pred CeEEEEcCCchHHHHHHH
Confidence 4578888999 5677776
No 416
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=23.61 E-value=62 Score=32.25 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=34.1
Q ss_pred EEcCC-CCCCChhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhh-hcCCCcEEEE-EcCCchH
Q 037501 58 FIHPM-SGKGSGRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNK-ELSSYDGVLA-VGGDGFF 124 (438)
Q Consensus 58 ivNP~-sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~-~~~~~d~IV~-vGGDGTv 124 (438)
||.|. +.- . ...++.....|+..|+++.+-.+-. ++..++=++++.+. ..+..|+|+| -||+|+.
T Consensus 3 ivaPS~~~~-~-~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~ 76 (284)
T PF02016_consen 3 IVAPSLSPI-D-PERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGAN 76 (284)
T ss_dssp EE-SSHHHH-C-HHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG
T ss_pred EEeCCCCcc-C-HHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH
Confidence 66777 221 2 2456778889999998887654322 23444434433221 1246787774 5999974
No 417
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=23.58 E-value=2e+02 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=31.5
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+..+|++.|+.++++.... ....++ . ...+|+||+.||.|.+++
T Consensus 14 ~~~~~l~~~g~~~~~~~~~~-~~~~~~-~------~~~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 14 NLYQYFCELGAQVKVVRNDE-IDIDGI-E------ALNPTHLVISPGPCTPNE 58 (193)
T ss_pred HHHHHHHHCCCcEEEEECCC-CCHHHH-h------hCCCCEEEEeCCCCChHH
Confidence 47778888999888775442 223332 1 135899999999999886
No 418
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.57 E-value=2.4e+02 Score=26.81 Aligned_cols=59 Identities=8% Similarity=-0.023 Sum_probs=37.7
Q ss_pred HHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCC-chHHHHHHhhhhc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGD-GFFNEILNGFLSS 134 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGD-GTv~EVvNGL~~~ 134 (438)
+.+...+++.|+++.+..++. .....+..+++. ..+.|+||+.+.| +...+++.-+...
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~---~~~vdgiii~~~~~~~~~~~i~~~~~~ 79 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMA---SQGWDFIAVDPLGIGTLTEAVQKAIAR 79 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHH---HcCCCEEEEcCCChHHhHHHHHHHHHC
Confidence 346777788888877776653 122223444443 3678999998876 5567777776543
No 419
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.56 E-value=4.3e+02 Score=24.70 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=35.0
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
|.....-...+.+.++..+++.|+++.+..+.... ...++.+.+. ..+.|+|++.+.
T Consensus 7 ~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~ 64 (273)
T cd06292 7 PELSNPIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLL---ARGVRGVVFISS 64 (273)
T ss_pred CCCcCchHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---HcCCCEEEEeCC
Confidence 44443334455567888899999887665554322 2224445543 357899999874
No 420
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=23.43 E-value=5.7e+02 Score=25.38 Aligned_cols=81 Identities=7% Similarity=-0.089 Sum_probs=43.0
Q ss_pred cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcc-eeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HH
Q 037501 49 VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAK-VNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FN 125 (438)
Q Consensus 49 ~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~ag-i~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~ 125 (438)
...++.+.|++.-.+ ..-..++.+-+...+++.| +.+.+..++.. ....+..+.+. ..++|+||+++.|.. ..
T Consensus 21 ~~~~~~Igvv~~~~~-~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~ 96 (330)
T PRK15395 21 AAADTRIGVTIYKYD-DNFMSVVRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL---AKGVKALAINLVDPAAAP 96 (330)
T ss_pred hcCCceEEEEEecCc-chHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH---HcCCCEEEEeccCHHHHH
Confidence 345677887775322 2222334445667777764 44443333221 11123333332 357999999988865 44
Q ss_pred HHHHhhhh
Q 037501 126 EILNGFLS 133 (438)
Q Consensus 126 EVvNGL~~ 133 (438)
+++.-+..
T Consensus 97 ~~l~~l~~ 104 (330)
T PRK15395 97 TVIEKARG 104 (330)
T ss_pred HHHHHHHH
Confidence 55655543
No 421
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=23.39 E-value=3.4e+02 Score=25.76 Aligned_cols=62 Identities=8% Similarity=0.060 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH-HHHHHhhhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF-NEILNGFLS 133 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv-~EVvNGL~~ 133 (438)
..+++.+...++..|+++.+..+.......+..+.+. ..+.|+||+.+-|... -++++-+..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~---~~~~dgiii~~~~~~~~~~~~~~~~~ 77 (289)
T cd01540 15 QTEWKFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLG---AQGAKGFVICVPDVKLGPAIVAKAKA 77 (289)
T ss_pred HHHHHHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHH---HcCCCEEEEccCchhhhHHHHHHHHh
Confidence 3455567888888888877665542222223333332 3578999999888533 344555544
No 422
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.36 E-value=7.7e+02 Score=24.79 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcEEEE
Q 037501 53 KNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
.+|.+|.= |...+...|.+ .....++.|++++.+.-.. ..+..+..+++.+ .+..|+|++
T Consensus 32 P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~--d~~V~GIlv 95 (286)
T PRK14184 32 PGLAVILV---GEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA--RPDIDGILL 95 (286)
T ss_pred CEEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC--CCcCceEEE
Confidence 34544432 44556677764 6788899999998775322 2334444555432 245677765
No 423
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=23.24 E-value=76 Score=26.54 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+.|.|...++++.+.|++.|.+.
T Consensus 85 r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 85 RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ccEEEEECCHHHHHHHHHHHHhh
Confidence 57888899999999999999764
No 424
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=23.19 E-value=3.4e+02 Score=28.53 Aligned_cols=49 Identities=6% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+... .+++-|+++|..|.+. . -+..+|++.|+++..+
T Consensus 145 ~~~~Y~~~l~~~i~~~---~~~lkVvvd~~~G~~~--~---~~~~ll~~lG~~v~~i 193 (443)
T cd03089 145 ILPDYIDRLLSDIKLG---KRPLKVVVDAGNGAAG--P---IAPQLLEALGCEVIPL 193 (443)
T ss_pred CHHHHHHHHHHhcccc---cCCCeEEEECCCCchH--H---HHHHHHHHCCCEEEEe
Confidence 3566777887777422 1689999999888653 2 3456677778765444
No 425
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=23.10 E-value=2.9e+02 Score=25.78 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
..+++.++..++..|+++.+..++.... ..++.+.+. ..++|+|++++.+-
T Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~ 66 (264)
T cd06274 15 ARIAKRLEALARERGYQLLIACSDDDPETERETVETLI---ARQVDALIVAGSLP 66 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEcCCCC
Confidence 3445567788888888887776654222 223444443 36799999998864
No 426
>PRK09267 flavodoxin FldA; Validated
Probab=23.06 E-value=1.8e+02 Score=26.08 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=38.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvN 129 (438)
++++||+ .|..|..+++.+.|...|... +++++..+... . .++..||.||++. ++|-+...+.
T Consensus 2 mki~IiY--~S~tGnT~~vA~~Ia~~l~~~--~~~~~~~~~~~-~---------~~l~~~d~vi~g~pt~~~G~~~~~~~ 67 (169)
T PRK09267 2 AKIGIFF--GSDTGNTEDIAKMIQKKLGKD--VADVVDIAKAS-K---------EDFEAYDLLILGIPTWGYGELQCDWD 67 (169)
T ss_pred CeEEEEE--ECCCChHHHHHHHHHHHhCCC--ceEEEEhhhCC-H---------hhHhhCCEEEEEecCcCCCCCCHHHH
Confidence 4788888 466677778888888888643 44444332221 1 1245788766652 4665554444
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-++
T Consensus 68 ~fl 70 (169)
T PRK09267 68 DFL 70 (169)
T ss_pred HHH
Confidence 443
No 427
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.01 E-value=4.8e+02 Score=26.03 Aligned_cols=77 Identities=5% Similarity=-0.035 Sum_probs=44.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
+++.+++ |.-..--...+.+-++..++..|+.+.+..++.. ....++.+.+. ..++|+||+.+.+.. +.+.++-
T Consensus 26 ~~Ig~i~-~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~---~~~vDGiIi~~~~~~~~~~~l~~ 101 (330)
T PRK10355 26 VKIGMAI-DDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI---NRGVDVLVIIPYNGQVLSNVIKE 101 (330)
T ss_pred ceEEEEe-cCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhhHHHHHHH
Confidence 4455554 5433332233344577888888988877655432 12233444443 258999999987754 4566665
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 102 ~~~ 104 (330)
T PRK10355 102 AKQ 104 (330)
T ss_pred HHH
Confidence 544
No 428
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.86 E-value=3.7e+02 Score=25.60 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 69 RRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 69 ~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
..+.+.++..+++.|+++.+..+.. + .+..+.+. ..+.|+|++.+-+.+- +.++-+.
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~---~~~~dgiii~~~~~~~-~~~~~~~ 76 (283)
T cd06279 20 SQFLAGVAEVLDAAGVNLLLLPASS--E-DSDSALVV---SALVDGFIVYGVPRDD-PLVAALL 76 (283)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCcc--H-HHHHHHHH---hcCCCEEEEeCCCCCh-HHHHHHH
Confidence 3455668888899998888776654 2 23333332 3679999999877653 4555443
No 429
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=22.82 E-value=2.1e+02 Score=29.35 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC---CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ---RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~---~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++++|+..+.-. ....+.+...|. ++.+.++. .+ .-..+.++.+.+.+...++.|.||++|| |.+-.+.
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~a 92 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDVT 92 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHHH
Confidence 678888886552 223456777776 34444332 11 1233444555554333345589999998 6666666
Q ss_pred Hhh
Q 037501 129 NGF 131 (438)
Q Consensus 129 NGL 131 (438)
-.+
T Consensus 93 k~v 95 (346)
T cd08196 93 TFV 95 (346)
T ss_pred HHH
Confidence 444
No 430
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=22.81 E-value=3.8e+02 Score=28.36 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
......+.|.+.+.... ..+++-|+|.|..|.+ .. -+..+|++.|+++..+
T Consensus 155 ~~~~Y~~~l~~~i~~~~-~~~~lkVvvD~~nGa~--~~---~~~~ll~~lG~~v~~i 205 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDL-TLKGLRIVLDTANGAA--YK---VAPTVFSELGADVIVI 205 (446)
T ss_pred HHHHHHHHHHHhcCCcc-CCCCCEEEEECCCchH--HH---HHHHHHHHcCCeEEEE
Confidence 45667777777664222 2357899999888754 22 3456677778876544
No 431
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=22.81 E-value=1.9e+02 Score=26.32 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
...+...|++.+++++++.-.. ...+... ++..||+||+.||=|.+.+
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~--~~~~~~~-----~~~~~d~iii~Gg~~~~~d 57 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDS--DFEEPLE-----DLDDYDGIIISGGPGSPYD 57 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTG--GHHHHHH-----HTTTSSEEEEECESSSTTS
T ss_pred HHHHHHHHHHCCCeEEEEECCC--chhhhhh-----hhcCCCEEEECCcCCcccc
Confidence 3468888999998888775433 2222221 2478999999999998886
No 432
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=22.64 E-value=75 Score=27.10 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=20.0
Q ss_pred EEeecCCChHHHHHHHHHHHHH
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+|.|+..|.+.+..|+..|+.+
T Consensus 86 eyI~Ea~d~~q~~SWla~Ir~C 107 (107)
T cd01231 86 DIIFEVGDEQQLNSWLAELRYC 107 (107)
T ss_pred eEEEEcCCHHHHHHHHHHHhcC
Confidence 6999999999999999999754
No 433
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=22.63 E-value=84 Score=34.48 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCCCC--hhhh-HHHHHHHHHhcceeEEEEEeCC-----CChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGS--GRRT-WETVAPIFVRAKVNTKVIVTQR-----AGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~--~~~~-~~~v~~~l~~agi~~~v~~T~~-----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
--+++-|.|=..|=-+ -..+ ++.|..+...-|.. ++-|.+ ..+-..+++.+. .-+.|++|++|||||
T Consensus 99 ~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~~~~~l~---~~~Id~LviIGGdgS 173 (539)
T TIGR02477 99 NSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFD--IIGSGRTKIETEEQFAKALTTAK---KLKLDGLVIIGGDDS 173 (539)
T ss_pred CcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCch--hhcCCCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCchH
Confidence 3577778876665322 2222 23466666655531 122222 122233444443 246899999999999
Q ss_pred HHHH
Q 037501 124 FNEI 127 (438)
Q Consensus 124 v~EV 127 (438)
+.-+
T Consensus 174 ~~~A 177 (539)
T TIGR02477 174 NTNA 177 (539)
T ss_pred HHHH
Confidence 8654
No 434
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=22.59 E-value=1.7e+02 Score=25.74 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHH
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS 103 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~ 103 (438)
|++|..+|...++.|+++.+.....+.+.++.
T Consensus 1 ~~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~ 32 (153)
T cd04336 1 FERLQELLNTNGARFRVLDHPPEGTSEEVAAI 32 (153)
T ss_pred CHHHHHHHHHCCCCEEEEecCCCCCHHHHHHH
Confidence 46788999999999999988877766666654
No 435
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.52 E-value=6.1e+02 Score=23.64 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeCC-CChHHHHHHHhhh
Q 037501 31 LPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQR-AGQAFDVMASTKN 106 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~~-~~ha~~~~~~~~~ 106 (438)
.+....-.+.|.+. ..+++.+|..+. ........++-.+..++..++++. +..+.. ...++++++++..
T Consensus 107 ~~~~~~~~~~l~~~------g~~~i~~i~~~~-~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 179 (273)
T cd06292 107 ALAMRLAVRHLVAL------GHRRIGFASGPG-RTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLG 179 (273)
T ss_pred HHHHHHHHHHHHHC------CCceEEEEeCCc-ccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhc
Confidence 34444444444432 356777765442 222333445557777888776432 222332 2234455555432
Q ss_pred hhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 107 KELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
...|+|+ ++.|.+...++..|....
T Consensus 180 ---~~~~ai~-~~~d~~a~g~~~~l~~~g 204 (273)
T cd06292 180 ---SGPTAIV-AASDLMALGAIRAARRRG 204 (273)
T ss_pred ---CCCCEEE-EcCcHHHHHHHHHHHHcC
Confidence 2367655 567999889999987764
No 436
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=22.35 E-value=2.7e+02 Score=28.03 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
..+++.||++-.+|++. ..+.++++.+++++|.++-++......-+ .+. .....|+.|.++
T Consensus 208 ~a~~~GIiv~tl~~q~~-~~~~~~l~~~l~~~gkk~y~~~~~~i~~~-----kL~--nf~eid~fV~~a 268 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGY-LELIKRLKKLLKKAGKKSYTLSVGEINPA-----KLA--NFPEIDAFVQIA 268 (307)
T ss_dssp T--EEEEEEE-STTT---HHHHHHHHHHHHHTT-EEEEEEESS--GG-----GGT--TS---SEEEE-S
T ss_pred cCCEEEEEEecCCCCCC-HHHHHHHHHHHHHcCCEEEEEEECCCCHH-----HHh--cCcccCEEEEec
Confidence 55899999999999886 46778999999999998877766655432 222 245678877665
No 437
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=22.31 E-value=7.4e+02 Score=24.21 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC----ChHHHHHHH
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA----GQAFDVMAS 103 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~----~ha~~~~~~ 103 (438)
.++........+.+.. ...+++.+|+--.. -+....+.++..+++.|+++...++-.. .+...+++.
T Consensus 142 p~~~~~~~a~~~~~~~------~~~~~v~~l~~~~~---~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~ 212 (348)
T cd06350 142 PSDTSQALAIVALLKH------FGWTWVGLVYSDDD---YGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKK 212 (348)
T ss_pred CCcHHHHHHHHHHHHH------CCCeEEEEEEecch---hHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHH
Confidence 3444445554444432 14577877774322 2344566788889999987754443332 244555555
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.. .+.|+||+.+.......++..+...
T Consensus 213 l~~---~~~~vvv~~~~~~~~~~~~~~a~~~ 240 (348)
T cd06350 213 LKS---STARVIVVFGDEDDALRLFCEAYKL 240 (348)
T ss_pred HHh---CCCcEEEEEeCcHHHHHHHHHHHHh
Confidence 542 4557777776655566666655443
No 438
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.30 E-value=3.9e+02 Score=26.66 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=43.6
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcc--eeEEEEEe--CCCChHHHHHHHhhhhhcC----CCcEEEEEcCC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAK--VNTKVIVT--QRAGQAFDVMASTKNKELS----SYDGVLAVGGD 121 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~ag--i~~~v~~T--~~~~ha~~~~~~~~~~~~~----~~d~IV~vGGD 121 (438)
.-|+++.||-.|.| .| +..+...+++.. +++.++.| +..+-+.++++.+...+.. .+|+||++=|=
T Consensus 12 ~~p~~I~vITs~~g---Aa---~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 12 KFPKRIAVITSPTG---AA---IQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCCCEEEEEeCCch---HH---HHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 45788888877654 23 334444444433 45555554 4556667787777654332 59999999888
Q ss_pred chHH
Q 037501 122 GFFN 125 (438)
Q Consensus 122 GTv~ 125 (438)
|.+-
T Consensus 86 Gs~e 89 (319)
T PF02601_consen 86 GSIE 89 (319)
T ss_pred CChH
Confidence 8754
No 439
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.24 E-value=6.8e+02 Score=23.78 Aligned_cols=83 Identities=7% Similarity=0.044 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
..+++.+|..+.. ........+-.+..+++.|+...+..... ...+.+.++++.+ ....+|+|+| ..|-+...+
T Consensus 117 G~~~I~~i~~~~~-~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ai~~-~~d~~A~gv 193 (269)
T cd06287 117 GARQIALIVGSAR-RNSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLA-QHPDLDALCV-PVDAFAVGA 193 (269)
T ss_pred CCCcEEEEeCCcc-cccHHHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHh-CCCCCCEEEE-cCcHHHHHH
Confidence 4567877765432 22222223346777788887654333221 2334555555432 1224676665 477777788
Q ss_pred HHhhhhccc
Q 037501 128 LNGFLSSRY 136 (438)
Q Consensus 128 vNGL~~~~~ 136 (438)
+..|.....
T Consensus 194 l~al~~~gl 202 (269)
T cd06287 194 VRAATELGR 202 (269)
T ss_pred HHHHHHcCC
Confidence 888876643
No 440
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=22.19 E-value=4.4e+02 Score=27.72 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
....+++.|.+.+.. .-+.+++-|++.+..|.+. .+ +..+|++.|+++..+
T Consensus 152 ~~~~Y~~~l~~~i~~-~~~~~~lkVvvD~~~G~~~--~~---~~~ll~~lg~~v~~i 202 (443)
T TIGR01455 152 AVGRYIEFLKSTLPR-GLTLSGLKVVLDCANGAAY--KV---APHVFRELGAEVIAI 202 (443)
T ss_pred HHHHHHHHHHHHhhc-ccccCCCEEEEECCCchHH--HH---HHHHHHHcCCEEEEE
Confidence 356777888777652 1234579999999887643 33 345677778776543
No 441
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.01 E-value=1.4e+02 Score=24.76 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE--EEeCCCChHHHHHHHhhhhhcCC
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV--IVTQRAGQAFDVMASTKNKELSS 111 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v--~~T~~~~ha~~~~~~~~~~~~~~ 111 (438)
+.++++.|++. -++++++=|- ..+. -+++...|+..|+.++. ++|. ..-+.+++++ ...
T Consensus 19 a~e~l~~L~~~-------g~~~~~lTNn---s~~s---~~~~~~~L~~~Gi~~~~~~i~ts-~~~~~~~l~~-----~~~ 79 (101)
T PF13344_consen 19 AVEALDALRER-------GKPVVFLTNN---SSRS---REEYAKKLKKLGIPVDEDEIITS-GMAAAEYLKE-----HKG 79 (101)
T ss_dssp HHHHHHHHHHT-------TSEEEEEES----SSS----HHHHHHHHHHTTTT--GGGEEEH-HHHHHHHHHH-----HTT
T ss_pred HHHHHHHHHHc-------CCCEEEEeCC---CCCC---HHHHHHHHHhcCcCCCcCEEECh-HHHHHHHHHh-----cCC
Confidence 45555555443 3789999882 2222 24566667888987642 2332 2222333332 134
Q ss_pred CcEEEEEcCCchHHHHH
Q 037501 112 YDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 112 ~d~IV~vGGDGTv~EVv 128 (438)
-..|.++|.||...|+-
T Consensus 80 ~~~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 80 GKKVYVLGSDGLREELR 96 (101)
T ss_dssp SSEEEEES-HHHHHHHH
T ss_pred CCEEEEEcCHHHHHHHH
Confidence 57899999998776654
No 442
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=22.00 E-value=8.3e+02 Score=24.68 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..|++.+|+.... -+....+.+++.|++.|.++...+. ....+....+.++. ..+.|+|++.|....+-.++
T Consensus 160 ~~k~va~i~~d~~---~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~---~~~~d~v~~~~~~~~~~~~~ 233 (369)
T PRK15404 160 KPKRIAVLHDKQQ---YGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLK---KENVDFVYYGGYHPEMGQIL 233 (369)
T ss_pred CCCEEEEEeCCCc---hhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHH---hcCCCEEEECCCchHHHHHH
Confidence 4578888876432 2334456788889999987753221 12234444555554 36789887665555555566
Q ss_pred Hhhhh
Q 037501 129 NGFLS 133 (438)
Q Consensus 129 NGL~~ 133 (438)
..+..
T Consensus 234 k~~~~ 238 (369)
T PRK15404 234 RQARE 238 (369)
T ss_pred HHHHH
Confidence 55543
No 443
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.95 E-value=7.4e+02 Score=24.06 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.|++.+|+. .. .-+....+.++..+++.|+++.-. ......+....+.++.+ .+.|.|++++.....-.++.
T Consensus 137 ~~~vail~~-~~--~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~---~~pd~v~~~~~~~~~~~~~~ 210 (312)
T cd06346 137 YKSVATTYI-NN--DYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA---GGPDALVVIGYPETGSGILR 210 (312)
T ss_pred CCeEEEEEc-cC--chhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh---cCCCEEEEecccchHHHHHH
Confidence 578888874 22 233445667888899999876432 22223445555666543 57898888765555555566
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.+..
T Consensus 211 ~~~~ 214 (312)
T cd06346 211 SAYE 214 (312)
T ss_pred HHHH
Confidence 5544
No 444
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=21.68 E-value=58 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=12.0
Q ss_pred CCcEEEEEcCCchH
Q 037501 111 SYDGVLAVGGDGFF 124 (438)
Q Consensus 111 ~~d~IV~vGGDGTv 124 (438)
.||.|++.||.+..
T Consensus 60 ~~D~vvv~Gg~~~~ 73 (166)
T TIGR01382 60 EYDALVIPGGRAPE 73 (166)
T ss_pred HCcEEEECCCCCHH
Confidence 69999999998853
No 445
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=21.60 E-value=1.7e+02 Score=21.17 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.+...|++.++.++++......... ......+|.||+.||..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~lii~g~~~~~~~~ 62 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVES-------DVDLDDYDGLILPGGPGTPDDL 62 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccc-------cCCcccCCEEEECCCCcchhhh
Confidence 4556677777777766544332211 1134689999999999998654
No 446
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.53 E-value=8.5e+02 Score=24.62 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhc----cCCCcEEEEEEcCCCCCCChhhhHHH-HHHHHHhcceeEEEEEe---CCCChHHHHHHHh
Q 037501 33 TCEMWVNRVNAFLNME----VGRPKNLLIFIHPMSGKGSGRRTWET-VAPIFVRAKVNTKVIVT---QRAGQAFDVMAST 104 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~----~~rpk~llvivNP~sG~g~~~~~~~~-v~~~l~~agi~~~v~~T---~~~~ha~~~~~~~ 104 (438)
.++...+.|.+.+... ..+|+=..|.++ ...+...|.+ .....++.|++++.+.- ....+..+..+++
T Consensus 11 iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~l 86 (297)
T PRK14168 11 IREEILEEIRGEVAELKEKYGKVPGLVTILVG----ESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKY 86 (297)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555555432 124544444444 4456677764 67888999999987642 2233344455555
Q ss_pred hhhhcCCCcEEEE
Q 037501 105 KNKELSSYDGVLA 117 (438)
Q Consensus 105 ~~~~~~~~d~IV~ 117 (438)
.+ .+..|+|++
T Consensus 87 N~--D~~V~GIiv 97 (297)
T PRK14168 87 NN--DDSIHGILV 97 (297)
T ss_pred hC--CCCCCEEEE
Confidence 32 245677775
No 447
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=21.51 E-value=2.6e+02 Score=31.90 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..++++||=| |.+ .-..+...|++.|++++++..... .++. +...+|+||+.||-|++.+
T Consensus 515 ~~~~IlVID~---gds----~~~~l~~~L~~~G~~v~vv~~~~~---~~~~------~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 515 EGRRILLVDH---EDS----FVHTLANYLRQTGASVTTLRHSHA---EAAF------DERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred CCCEEEEEEC---CCh----hHHHHHHHHHHCCCeEEEEECCCC---hhhh------hhcCCCEEEEcCCCCCchh
Confidence 3456666655 211 123678888989988876543321 2222 1246999999999999875
No 448
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=21.45 E-value=4.3e+02 Score=27.93 Aligned_cols=50 Identities=8% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
.....++.|.+.+... +-+.+-|+|.|..|.+. .++ ..+|+..|+++..+
T Consensus 145 ~~~~Y~~~l~~~i~~~--~i~~lkVvvd~~~Ga~~--~~~---~~ll~~lg~~vv~~ 194 (445)
T PRK09542 145 VLADYAAFLRSLVDLS--GIRPLKVAVDAGNGMGG--HTV---PAVLGGLPITLLPL 194 (445)
T ss_pred hHHHHHHHHHHhcccc--cCCCCEEEEECCCCchh--HHH---HHHHHhCCCEEEEE
Confidence 4566777787776422 12578999999888653 333 45566667665433
No 449
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=21.32 E-value=8.2e+02 Score=24.32 Aligned_cols=78 Identities=6% Similarity=-0.110 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
..|++.+|.. ...- +....+.++..|++.|+++.....- ...+...++.++. ..+.|+|++.+.-.-.-.++
T Consensus 132 g~k~vaii~~-d~~~--g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~---~~~pd~v~~~~~~~~~~~~~ 205 (348)
T cd06355 132 GGKRFYLVGS-DYVY--PRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIK---AAKPDVVVSTVNGDSNVAFF 205 (348)
T ss_pred CCCeEEEECC-cchH--HHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHH---HhCCCEEEEeccCCchHHHH
Confidence 4678776643 3222 2345667888999999876533211 2223333444443 35789877754322334455
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
..+...
T Consensus 206 ~~~~~~ 211 (348)
T cd06355 206 KQLKAA 211 (348)
T ss_pred HHHHHc
Confidence 555443
No 450
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.31 E-value=3.7e+02 Score=26.24 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=51.1
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+.+.||+...+-. --.++..-++..+++.|+.+-+..|.+..+.++..+.+. ..+.|+||+++-... .+-+..+.
T Consensus 2 ~~IGvivp~~~np-ff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~---~~~vDGiI~~s~~~~-~~~l~~~~ 76 (279)
T PF00532_consen 2 KTIGVIVPDISNP-FFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLL---QRRVDGIILASSEND-DEELRRLI 76 (279)
T ss_dssp CEEEEEESSSTSH-HHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHH---HTTSSEEEEESSSCT-CHHHHHHH
T ss_pred CEEEEEECCCCCc-HHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHH---hcCCCEEEEecccCC-hHHHHHHH
Confidence 3456666443211 123455668889999999888888887666666666654 368999999977776 45555655
Q ss_pred hc
Q 037501 133 SS 134 (438)
Q Consensus 133 ~~ 134 (438)
..
T Consensus 77 ~~ 78 (279)
T PF00532_consen 77 KS 78 (279)
T ss_dssp HT
T ss_pred Hc
Confidence 44
No 451
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=21.13 E-value=2.2e+02 Score=27.24 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=31.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+|++|+..|-+- .- ..+...|+++|+++.++..... .++.+|+||+.||-
T Consensus 1 ~~v~Vl~~~G~n--~~----~~~~~al~~~G~~~~~i~~~~~-------------~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFPGTN--CD----RDTVYALRLLGVDAEIVWYEDG-------------SLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCCCcC--cH----HHHHHHHHHCCCeEEEEecCCC-------------CCCCCCEEEECCCC
Confidence 368888887332 11 1234667788988876643221 13579999999985
No 452
>PRK09492 treR trehalose repressor; Provisional
Probab=21.12 E-value=7.5e+02 Score=23.82 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=39.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+.+.+.||+. .-...-...+.+.+...+++.|+.+.+..+.... ...+..+.+. ...+|+||+.+-+
T Consensus 61 ~~~~Ig~i~~-~~~~~~~~~~~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~ 128 (315)
T PRK09492 61 SDKVVGIIVS-RLDSLSENQAVRTMLPAFYEQGYDPIIMESQFSPEKVNEHLGVLK---RRNVDGVILFGFT 128 (315)
T ss_pred CCCeEEEEec-CCcCcccHHHHHHHHHHHHHcCCeEEEEecCCChHHHHHHHHHHH---hcCCCEEEEeCCC
Confidence 4456777773 2222222355566888888899877665554322 2223444443 2579999998754
No 453
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=21.10 E-value=96 Score=34.17 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCCCCCCh--hhh-HHHHHHHHHhcceeEEEEEeCC-----CChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGSG--RRT-WETVAPIFVRAKVNTKVIVTQR-----AGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~~--~~~-~~~v~~~l~~agi~~~v~~T~~-----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
--+++-|.|=..|=-+. ..+ ++.|..+...-|.+ ++-|.+ ..+-..+++.+. .-+.|++|++|||||
T Consensus 102 ~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~i~~~l~---~~~Id~LviIGGd~S 176 (555)
T PRK07085 102 DSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFD--MIGSGRTKIETEEQKEACLETVK---KLKLDGLVIIGGDDS 176 (555)
T ss_pred CCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChh--hhcCCCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCchH
Confidence 35788888866663222 222 33466666555531 222222 123334444443 246899999999999
Q ss_pred HHHH
Q 037501 124 FNEI 127 (438)
Q Consensus 124 v~EV 127 (438)
+.-+
T Consensus 177 ~~~A 180 (555)
T PRK07085 177 NTNA 180 (555)
T ss_pred HHHH
Confidence 8654
No 454
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.03 E-value=2.3e+02 Score=25.48 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHHhh
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILNGF 131 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvNGL 131 (438)
++||+ .|..|..+++.+.|...|.. ..++++....... . ++..||.|+++. |+|-+.+.+..+
T Consensus 2 i~IiY--~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~-----~-----~l~~~d~ii~gspty~~g~~p~~~~~f 67 (167)
T TIGR01752 2 IGIFY--GTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASK-----E-----DLNAYDKLILGTPTWGVGELQEDWEDF 67 (167)
T ss_pred EEEEE--ECCCChHHHHHHHHHHHhCC--CceEEEEcccCCH-----h-----HHhhCCEEEEEecCCCCCcCcHHHHHH
Confidence 55666 45677888888888888764 3344444333221 1 235789888887 789777665555
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
+.
T Consensus 68 l~ 69 (167)
T TIGR01752 68 LP 69 (167)
T ss_pred HH
Confidence 44
No 455
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=20.95 E-value=1e+03 Score=25.45 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.-+++.+|+- ... -+....+.++..+++.|+.+...+ +.. ..+...++.++. ..+.|+||+.+-......
T Consensus 186 ~wk~VaiI~~-dd~--yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk---~~~a~vVvl~~~~~~~~~ 259 (510)
T cd06364 186 RWNWVGTIAA-DDD--YGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQ---NSTAKVIVVFSSGPDLEP 259 (510)
T ss_pred CCeEEEEEEe-cCc--chHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHH---hcCCeEEEEEeCcHHHHH
Confidence 3466555532 222 233456678888888998765332 221 222233444442 356788888777776667
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
++..+...
T Consensus 260 ll~qa~~~ 267 (510)
T cd06364 260 LIKEIVRR 267 (510)
T ss_pred HHHHHHHh
Confidence 76665544
No 456
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.95 E-value=4.2e+02 Score=25.84 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=31.8
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHH--HHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAF--DVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~--~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
+.++..++..|+++.+..++. +.+. ++.+.+. ..+.|+||+++-|.. +.+.+.-+..
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~-~~~~q~~~i~~l~---~~~vDgIIi~~~~~~~~~~~l~~~~~ 77 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANG-NEAKQISQIENLI---ARGVDVLVIIPQNGQVLSNAVQEAKD 77 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCC-CHHHHHHHHHHHH---HcCCCEEEEeCCChhHHHHHHHHHHH
Confidence 346677777777665543332 2222 2333332 256888888887765 3556655544
No 457
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=20.90 E-value=3e+02 Score=28.91 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV 88 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v 88 (438)
+++....-+|.+++.+.+-...-|++|+|---+.-+..-.+...+++.+|+.||.++++
T Consensus 55 ~~~~~plavqa~~~aiek~cp~a~~vLlIpEnHTRN~fYl~nv~~L~~Il~~AG~~Vri 113 (403)
T TIGR02049 55 NPEFRPLAARAIQSYFKRHCPGAKKVLIIPENHTRNKFYLENVARLEEILRLAGLEVRL 113 (403)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccceEEEecCCCcchHHHHHHHHHHHHHHHHcCceEEe
Confidence 56666677788888877655566899998765544333333344688999999998765
No 458
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.89 E-value=6.9e+02 Score=23.29 Aligned_cols=104 Identities=10% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMAST 104 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~ 104 (438)
..+.+......+.|.+.+.......+++.+|..+. +...+....+-++..|++.++++....... ...+++.++.+
T Consensus 101 ~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~-~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (277)
T cd06319 101 SDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQ-KRKNGQKRTKGFKEAMKEAGCDLAGIRQQKDFSYQETFDYTNDL 179 (277)
T ss_pred eccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccC-CCccHHHHHHHHHHHHHhcCCceEeeccCCCCCHHHHHHHHHHH
Confidence 34455566777777766643322456777775432 222333444557888888887654332211 12344545444
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.. .....++|++. +|.....++..|...
T Consensus 180 l~-~~~~~~ai~~~-~d~~a~g~~~al~~~ 207 (277)
T cd06319 180 LT-ANPDIRAIWLQ-GSDRYQGALDAIATA 207 (277)
T ss_pred HH-hCCCCCEEEEC-CCccchHHHHHHHHc
Confidence 32 12345676665 566656777777654
No 459
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=20.85 E-value=4.5e+02 Score=24.39 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 61 PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 61 P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
|.....-...+++.++..+++.|+++.+..+..... ..++.+.+. ..+.|+|++.+-+-. .+.++-+
T Consensus 7 ~~~~~~~~~~i~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~-~~~~~~~ 74 (260)
T cd06286 7 PYINHPYFSQLVDGIEKAALKHGYKVVLLQTNYDKEKELEYLELLK---TKQVDGLILCSREND-WEVIEPY 74 (260)
T ss_pred CCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHH---HcCCCEEEEeCCCCC-HHHHHHH
Confidence 443333345566678888888898887766654322 223444442 357899999876422 2444433
No 460
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=20.71 E-value=4.2e+02 Score=28.04 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI 89 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~ 89 (438)
...+++.|.+.+....-+.+.+-|++.+..|.+. . -+.++|++.|+++..+
T Consensus 153 ~~~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~--~---~~~~il~~lg~~v~~~ 203 (461)
T cd05800 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGA--G---YLEELLRGAGVDVEEI 203 (461)
T ss_pred HHHHHHHHHHHhChhhhhcCCceEEEeCCCCCcH--H---HHHHHHHHcCCCEEEe
Confidence 4667777777764322233578899998887653 2 3556677778876443
No 461
>PRK07116 flavodoxin; Provisional
Probab=20.63 E-value=2e+02 Score=25.75 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVR 81 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~ 81 (438)
++.+|++ +|+.|+.+++.+.|...+..
T Consensus 3 ~k~lIvY--~S~tGnT~~iA~~Ia~~l~~ 29 (160)
T PRK07116 3 NKTLVAY--FSATGTTKKVAEKLAEVTGA 29 (160)
T ss_pred CcEEEEE--ECCCCcHHHHHHHHHHHhcC
Confidence 5677777 46777788888888888754
No 462
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=20.63 E-value=7e+02 Score=23.30 Aligned_cols=100 Identities=8% Similarity=0.042 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEe-C-CCChHHHHHHHh
Q 037501 28 HKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVT-Q-RAGQAFDVMAST 104 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T-~-~~~ha~~~~~~~ 104 (438)
..+.+....-.+.|.+.. +..+++.++..+.. ........+-+...+++. ++++..... + ....+.+.++++
T Consensus 102 ~d~~~~g~~~~~~l~~~~----~g~~~i~~l~~~~~-~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (275)
T cd06320 102 TDNKANGVRGAEWIIDKL----AEGGKVAIIEGKAG-AFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTI 176 (275)
T ss_pred cCcHHHHHHHHHHHHHHh----CCCceEEEEeCCCC-CccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHH
Confidence 344444555555555543 23467887765332 222333345577888888 876543222 2 122344455444
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.. .....|+| ++.+|.....+++.|...
T Consensus 177 l~-~~~~~~ai-~~~~d~~a~~~~~al~~~ 204 (275)
T cd06320 177 LQ-RNPDLKAI-YCNNDTMALGVVEAVKNA 204 (275)
T ss_pred HH-hCCCccEE-EECCchhHHHHHHHHHhc
Confidence 32 12345655 455788788888888654
No 463
>PRK13566 anthranilate synthase; Provisional
Probab=20.55 E-value=2.8e+02 Score=31.66 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=39.1
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..++++||=| |. .....+...|+..|+++.++..... .++.. ...+|+||+.||-|...+
T Consensus 525 ~g~~IlvID~---~d----sf~~~l~~~Lr~~G~~v~vv~~~~~---~~~~~------~~~~DgVVLsgGpgsp~d 584 (720)
T PRK13566 525 EGKRVLLVDH---ED----SFVHTLANYFRQTGAEVTTVRYGFA---EEMLD------RVNPDLVVLSPGPGRPSD 584 (720)
T ss_pred CCCEEEEEEC---CC----chHHHHHHHHHHCCCEEEEEECCCC---hhHhh------hcCCCEEEECCCCCChhh
Confidence 4567777766 21 1123688889999988877655432 22221 246899999999998653
No 464
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.50 E-value=8.4e+02 Score=26.16 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhcc-----------CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc--ceeEEEEEe--CCCCh
Q 037501 32 PTCEMWVNRVNAFLNMEV-----------GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA--KVNTKVIVT--QRAGQ 96 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~-----------~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a--gi~~~v~~T--~~~~h 96 (438)
-....-++.|+..|..+. ..|+++-||-.|.|- .+..|...+.+. .+++.++.| +..+-
T Consensus 104 G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgA------airDIl~~~~rR~P~~~viv~pt~VQG~~A 177 (440)
T COG1570 104 GALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGA------ALRDILHTLSRRFPSVEVIVYPTLVQGEGA 177 (440)
T ss_pred hHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchH------HHHHHHHHHHhhCCCCeEEEEeccccCCCc
Confidence 345666777887776532 467889999877653 234444444432 245555544 56666
Q ss_pred HHHHHHHhhhhhc-CCCcEEEEEcCCchHHH--------HHHhhhhc
Q 037501 97 AFDVMASTKNKEL-SSYDGVLAVGGDGFFNE--------ILNGFLSS 134 (438)
Q Consensus 97 a~~~~~~~~~~~~-~~~d~IV~vGGDGTv~E--------VvNGL~~~ 134 (438)
+.++++.+...+. ..+|+||++=|=|.+-+ |+-.+...
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s 224 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAAS 224 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhC
Confidence 7788777654333 45999999999999643 45556554
No 465
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=20.43 E-value=7.9e+02 Score=23.83 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=46.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE--EE-EeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK--VI-VTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~--v~-~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+++.+|..|..-...+...++-.+..|++.|+.+. .+ .... ...+.+.++++.+ ..+|+|+| .+|.+-..
T Consensus 175 G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~p~ai~~-~~d~~A~g 250 (329)
T TIGR01481 175 GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKG---SLPTAVFV-ASDEMAAG 250 (329)
T ss_pred CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhC---CCCCEEEE-cCcHHHHH
Confidence 4577887765543211123334446677888887543 22 2221 2335555655532 34676665 78888888
Q ss_pred HHHhhhhccc
Q 037501 127 ILNGFLSSRY 136 (438)
Q Consensus 127 VvNGL~~~~~ 136 (438)
++..|.....
T Consensus 251 ~~~al~~~g~ 260 (329)
T TIGR01481 251 ILNAAMDAGI 260 (329)
T ss_pred HHHHHHHcCC
Confidence 8988876643
No 466
>PRK11249 katE hydroperoxidase II; Provisional
Probab=20.29 E-value=1.6e+02 Score=33.71 Aligned_cols=67 Identities=13% Similarity=0.252 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC------ChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA------GQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~------~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
|++.||+.+-. -..-+..+..+|+.+|+.+.++-.+.. |.....-..+.......||+|++.||...
T Consensus 598 RKIaILVaDG~----d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~ 670 (752)
T PRK11249 598 RKVAILLNDGV----DAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKAN 670 (752)
T ss_pred cEEEEEecCCC----CHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchh
Confidence 56777765421 122345688889999998887644321 11000001111111235999999999643
No 467
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.25 E-value=7e+02 Score=23.14 Aligned_cols=99 Identities=9% Similarity=0.061 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE--E-EeC-CCChHHHHHHHh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV--I-VTQ-RAGQAFDVMAST 104 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v--~-~T~-~~~ha~~~~~~~ 104 (438)
.+.+......+.|.+ ...+++.++-++..- .......+-.+..++.+++.+.. . .+. ....+.+.++++
T Consensus 99 d~~~~g~~~~~~l~~------~g~~~i~~i~~~~~~-~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (264)
T cd06274 99 DNRDGAAELTRELLA------APPEEVLFLGGLPEL-SPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAEL 171 (264)
T ss_pred ccHHHHHHHHHHHHH------CCCCcEEEEeCCCcc-cchHHHHHHHHHHHHHcCCCCCcceeecCCCChHHHHHHHHHH
Confidence 344445556555554 255788877665432 22333344577778888764332 2 222 223445555554
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
.......+++|+| ++|.+..-+++.|....
T Consensus 172 l~~~~~~~~ai~~-~~d~~A~g~~~al~~~g 201 (264)
T cd06274 172 LARLGRLPRALFT-TSYTLLEGVLRFLRERP 201 (264)
T ss_pred HccCCCCCcEEEE-cChHHHHHHHHHHHHcC
Confidence 3211123676664 57988888999887654
No 468
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.25 E-value=9.1e+02 Score=24.43 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhh---ccCCCcEEEEEEcCCCCCCChhhhHH-HHHHHHHhcceeEEEEEeC-C--CChHHHHHHHhhh
Q 037501 34 CEMWVNRVNAFLNM---EVGRPKNLLIFIHPMSGKGSGRRTWE-TVAPIFVRAKVNTKVIVTQ-R--AGQAFDVMASTKN 106 (438)
Q Consensus 34 ~~~w~~~l~~~~~~---~~~rpk~llvivNP~sG~g~~~~~~~-~v~~~l~~agi~~~v~~T~-~--~~ha~~~~~~~~~ 106 (438)
++...+.|.+.+.. ..++..+|.+|.= |...+...|. ......++.|++++.+.-. . ..+..+..+++.+
T Consensus 11 A~~i~~~lk~~v~~l~~~~g~~p~LaiI~v---gdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 11 AAEIEQRLQAQIESNLPKAGRPPGLAVLRV---GDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEEEe---CCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445555554432 1123334444432 4445667776 4778889999999876543 2 2233344444432
Q ss_pred hhcCCCcEEEE
Q 037501 107 KELSSYDGVLA 117 (438)
Q Consensus 107 ~~~~~~d~IV~ 117 (438)
.+..|+|++
T Consensus 88 --D~~V~GIiv 96 (297)
T PRK14186 88 --DERVDGILL 96 (297)
T ss_pred --CCCCCEEEE
Confidence 245778775
No 469
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=20.18 E-value=8.2e+02 Score=23.90 Aligned_cols=77 Identities=10% Similarity=-0.082 Sum_probs=44.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
.+++.+|.. ... -+....+.++..++++|.++....+- ...+-..++.++. ..+.|.|++.|--...-.+++
T Consensus 132 ~~~v~il~~-d~~--~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~---~~~~d~v~~~~~~~~~~~~~~ 205 (333)
T cd06331 132 GKRFYLIGS-DYV--WPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIK---AAGPDVVLSTLVGDSNVAFYR 205 (333)
T ss_pred CCeEEEECC-Cch--hHHHHHHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHH---HcCCCEEEEecCCCChHHHHH
Confidence 577777753 332 23345667888899999876432221 2234444555553 357888776544334456777
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
.+...
T Consensus 206 ~~~~~ 210 (333)
T cd06331 206 QFAAA 210 (333)
T ss_pred HHHHc
Confidence 77655
No 470
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.02 E-value=4.2e+02 Score=27.09 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHhhhcc--CCCcEEEEEEcCCCCCCChh--hhHHHHHHHHH---hcceeEEEEEeCCCChHHHHHHH
Q 037501 31 LPTCEMWVNRVNAFLNMEV--GRPKNLLIFIHPMSGKGSGR--RTWETVAPIFV---RAKVNTKVIVTQRAGQAFDVMAS 103 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~--~rpk~llvivNP~sG~g~~~--~~~~~v~~~l~---~agi~~~v~~T~~~~ha~~~~~~ 103 (438)
.+....-++.+.+.+.... .+||=.+.=+||++|.+-.. +--+.|.|..+ +.|+++. .+--|-.+-..
T Consensus 173 ~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v~-----GP~paDt~F~~ 247 (320)
T TIGR00557 173 PELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGIDLI-----GPLPADTLFHP 247 (320)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCccc-----CCCCchhhccc
Confidence 3444455555666665322 34554455589999975422 22223555554 4455442 33333222222
Q ss_pred hhhhhcCCCcEEEEE
Q 037501 104 TKNKELSSYDGVLAV 118 (438)
Q Consensus 104 ~~~~~~~~~d~IV~v 118 (438)
. ...+||+||++
T Consensus 248 ~---~~~~~D~vvaM 259 (320)
T TIGR00557 248 A---ALAKYDAVLAM 259 (320)
T ss_pred c---cccCCCEEEEC
Confidence 1 23679999964
Done!