Query 037501
Match_columns 438
No_of_seqs 317 out of 1670
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:20:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 1.8E-44 6E-49 358.7 20.6 228 50-434 6-235 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 1.5E-40 5.2E-45 334.5 19.4 230 52-437 24-255 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 3.8E-39 1.3E-43 324.0 17.3 226 51-434 28-256 (332)
4 2an1_A Putative kinase; struct 99.4 4E-13 1.4E-17 131.9 7.0 113 52-246 5-121 (292)
5 1yt5_A Inorganic polyphosphate 99.1 1.4E-10 4.6E-15 112.3 10.4 99 53-247 1-99 (258)
6 1u0t_A Inorganic polyphosphate 98.9 1.1E-09 3.7E-14 108.6 6.8 117 51-248 3-135 (307)
7 2i2c_A Probable inorganic poly 98.8 5.5E-09 1.9E-13 101.8 8.1 95 53-247 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.9 4.8E-06 1.6E-10 85.0 3.9 80 50-133 39-136 (388)
9 1z0s_A Probable inorganic poly 96.2 0.0055 1.9E-07 59.7 5.8 60 52-131 29-88 (278)
10 3pfn_A NAD kinase; structural 94.2 0.19 6.3E-06 50.7 9.9 78 50-131 36-128 (365)
11 3qbe_A 3-dehydroquinate syntha 92.0 0.74 2.5E-05 46.3 10.4 95 21-132 23-123 (368)
12 3okf_A 3-dehydroquinate syntha 91.5 0.72 2.5E-05 46.7 9.8 77 51-132 61-143 (390)
13 3uhj_A Probable glycerol dehyd 91.4 0.31 1.1E-05 49.3 6.9 94 22-134 32-128 (387)
14 3jzd_A Iron-containing alcohol 89.7 0.99 3.4E-05 45.0 8.8 94 21-134 14-111 (358)
15 1jq5_A Glycerol dehydrogenase; 89.6 0.54 1.8E-05 46.9 6.7 94 22-133 11-107 (370)
16 3ce9_A Glycerol dehydrogenase; 89.4 0.81 2.8E-05 45.3 7.9 97 21-133 12-109 (354)
17 1sg6_A Pentafunctional AROM po 88.7 0.57 1.9E-05 47.3 6.2 76 52-132 36-125 (393)
18 3hl0_A Maleylacetate reductase 87.9 1.3 4.3E-05 44.2 8.1 93 22-134 13-109 (353)
19 1ta9_A Glycerol dehydrogenase; 85.5 1.3 4.5E-05 45.6 6.9 75 53-133 92-166 (450)
20 2gru_A 2-deoxy-scyllo-inosose 82.7 5.6 0.00019 39.6 10.0 97 21-132 12-114 (368)
21 1qtn_A Caspase-8; apoptosis, d 81.7 4.8 0.00016 35.7 8.0 71 46-116 16-101 (164)
22 1pyo_A Caspase-2; apoptosis, c 81.2 9.4 0.00032 33.9 9.8 74 42-115 22-104 (167)
23 2ql9_A Caspase-7; cysteine pro 80.9 3.9 0.00013 36.7 7.2 70 46-115 37-114 (173)
24 3n7t_A Macrophage binding prot 80.6 3.4 0.00012 38.9 7.1 73 52-124 9-118 (247)
25 1o2d_A Alcohol dehydrogenase, 80.3 6.2 0.00021 39.2 9.3 75 53-133 41-119 (371)
26 2dko_A Caspase-3; low barrier 78.8 6.1 0.00021 34.3 7.6 74 49-122 12-94 (146)
27 3iv7_A Alcohol dehydrogenase I 77.5 2.2 7.4E-05 42.7 4.9 92 21-134 14-110 (364)
28 1vlj_A NADH-dependent butanol 76.9 3.1 0.00011 41.9 6.0 97 21-132 21-121 (407)
29 3bfj_A 1,3-propanediol oxidore 76.0 8.5 0.00029 38.3 8.9 97 22-132 12-112 (387)
30 3rpe_A MDAB, modulator of drug 73.9 4.4 0.00015 37.5 5.7 69 45-118 18-90 (218)
31 3p45_A Caspase-6; protease, hu 73.9 10 0.00035 34.1 7.9 71 46-116 37-115 (179)
32 4ehd_A Caspase-3; caspase, apo 73.2 8.4 0.00029 37.0 7.6 74 49-122 40-122 (277)
33 3fni_A Putative diflavin flavo 73.1 13 0.00043 32.2 8.2 61 52-119 4-64 (159)
34 1m72_A Caspase-1; caspase, cys 72.7 8.8 0.0003 36.7 7.6 78 46-123 25-110 (272)
35 3ox4_A Alcohol dehydrogenase 2 71.8 4.9 0.00017 40.2 5.8 94 22-131 10-107 (383)
36 1fy2_A Aspartyl dipeptidase; s 71.1 6.9 0.00024 36.2 6.4 68 51-132 30-98 (229)
37 3kkl_A Probable chaperone prot 70.8 4.6 0.00016 37.9 5.1 41 52-92 3-51 (244)
38 1kq3_A Glycerol dehydrogenase; 70.7 1.7 5.8E-05 43.4 2.1 96 21-133 20-115 (376)
39 2nn3_C Caspase-1; cysteine pro 70.4 9.3 0.00032 37.3 7.3 73 50-122 57-137 (310)
40 3lft_A Uncharacterized protein 69.3 27 0.00093 32.4 10.3 90 34-134 119-208 (295)
41 1vhq_A Enhancing lycopene bios 68.9 16 0.00055 33.5 8.4 72 51-123 5-102 (232)
42 2fqx_A Membrane lipoprotein TM 68.9 19 0.00065 34.3 9.2 68 51-121 3-72 (318)
43 4a6h_A Phosphatidylinositol 4, 68.4 6.6 0.00023 32.7 5.0 25 22-46 94-118 (120)
44 3od5_A Caspase-6; caspase doma 68.0 14 0.00047 35.4 7.9 74 49-122 17-99 (278)
45 1v89_A Hypothetical protein KI 67.8 7.2 0.00025 31.0 5.1 26 22-47 88-113 (118)
46 1rrm_A Lactaldehyde reductase; 67.4 6.2 0.00021 39.3 5.5 94 22-131 10-107 (386)
47 1nw9_B Caspase 9, apoptosis-re 67.4 20 0.00069 34.1 8.9 69 46-114 14-90 (277)
48 4h1h_A LMO1638 protein; MCCF-l 65.9 7.7 0.00026 38.0 5.7 71 51-124 10-92 (327)
49 1v5u_A SBF1, SET binding facto 65.2 4 0.00014 32.6 3.0 26 22-47 87-112 (117)
50 1rw7_A YDR533CP; alpha-beta sa 64.7 4.5 0.00015 37.6 3.6 41 52-92 3-51 (243)
51 2lnd_A De novo designed protei 64.5 21 0.00072 28.0 6.7 60 40-104 39-98 (112)
52 1unq_A RAC-alpha serine/threon 64.2 8.9 0.0003 31.1 5.0 26 22-47 86-111 (125)
53 3h11_B Caspase-8; cell death, 64.0 19 0.00066 34.2 8.0 69 46-114 10-93 (271)
54 4grd_A N5-CAIR mutase, phospho 63.0 51 0.0017 29.4 9.9 74 54-134 14-91 (173)
55 3f6r_A Flavodoxin; FMN binding 62.3 14 0.00046 30.9 6.0 70 53-134 2-77 (148)
56 2qh8_A Uncharacterized protein 62.3 30 0.001 32.2 9.1 88 34-132 126-213 (302)
57 1x05_A Pleckstrin; PH domain, 61.1 6.4 0.00022 32.1 3.6 29 23-51 97-125 (129)
58 2cof_A Protein KIAA1914; PH do 60.9 14 0.00047 29.2 5.5 25 22-46 77-101 (107)
59 2cod_A Centaurin-delta 1; ARF 60.7 10 0.00035 30.2 4.7 27 22-48 75-101 (115)
60 4eys_A MCCC family protein; MC 59.8 16 0.00054 36.1 6.8 75 53-131 5-93 (346)
61 3k9c_A Transcriptional regulat 59.6 29 0.001 31.9 8.3 76 50-131 10-85 (289)
62 2q9u_A A-type flavoprotein; fl 59.0 44 0.0015 32.9 10.0 77 34-119 239-315 (414)
63 3gbv_A Putative LACI-family tr 59.0 46 0.0016 30.4 9.6 82 50-134 6-93 (304)
64 2j32_A Caspase-3; Pro-caspase3 59.0 25 0.00084 33.0 7.7 75 49-123 12-95 (250)
65 1oi4_A Hypothetical protein YH 58.6 3.8 0.00013 36.6 1.8 70 48-123 19-98 (193)
66 1u5d_A SKAP55, SRC kinase-asso 58.5 9.2 0.00031 29.7 4.0 26 22-47 81-106 (108)
67 3lkv_A Uncharacterized conserv 58.5 49 0.0017 31.1 9.9 89 34-133 126-214 (302)
68 3e4c_A Caspase-1; zymogen, inf 57.9 43 0.0015 32.4 9.4 79 44-122 49-136 (302)
69 2w2x_D 1-phosphatidylinositol- 57.3 7.7 0.00026 32.0 3.4 25 23-47 96-120 (124)
70 1f1j_A Caspase-7 protease; cas 57.0 20 0.00069 34.8 6.9 79 45-123 61-148 (305)
71 1zl0_A Hypothetical protein PA 56.9 12 0.00042 36.5 5.3 70 53-124 17-94 (311)
72 3l3b_A ES1 family protein; ssg 56.9 18 0.00061 33.8 6.3 71 52-123 23-119 (242)
73 3dlo_A Universal stress protei 56.8 63 0.0021 27.0 9.4 112 2-117 5-123 (155)
74 2rgy_A Transcriptional regulat 56.6 32 0.0011 31.6 8.1 78 51-133 7-88 (290)
75 3dfz_A SIRC, precorrin-2 dehyd 56.3 39 0.0013 31.2 8.4 74 52-133 31-113 (223)
76 4evq_A Putative ABC transporte 55.8 61 0.0021 30.6 10.2 99 25-135 130-230 (375)
77 3hly_A Flavodoxin-like domain; 55.0 27 0.00092 29.9 6.7 58 54-119 2-59 (161)
78 1eaz_A Tandem PH domain contai 54.9 9.5 0.00033 30.7 3.6 28 22-49 87-114 (125)
79 3sr3_A Microcin immunity prote 54.9 11 0.00037 37.1 4.6 73 52-124 12-93 (336)
80 1xah_A Sadhqs, 3-dehydroquinat 54.6 5.3 0.00018 39.4 2.2 93 22-132 12-110 (354)
81 3td9_A Branched chain amino ac 54.5 65 0.0022 30.4 10.1 99 26-134 128-227 (366)
82 2q5c_A NTRC family transcripti 54.3 39 0.0013 30.3 7.9 66 52-131 94-159 (196)
83 1wjm_A Beta-spectrin III; PH d 54.2 11 0.00036 30.7 3.7 26 22-47 93-118 (123)
84 3pp2_A RHO GTPase-activating p 54.2 9.2 0.00032 31.5 3.4 25 22-46 99-123 (124)
85 4eyg_A Twin-arginine transloca 53.9 77 0.0026 29.8 10.5 97 26-134 119-217 (368)
86 2hqb_A Transcriptional activat 53.6 27 0.00091 32.8 7.1 67 51-120 4-72 (296)
87 2fp3_A Caspase NC; apoptosis, 53.4 27 0.00093 34.0 7.1 73 46-118 53-134 (316)
88 3eaf_A ABC transporter, substr 53.4 83 0.0028 30.1 10.8 100 25-134 119-222 (391)
89 1usg_A Leucine-specific bindin 53.2 62 0.0021 30.1 9.6 99 25-134 116-216 (346)
90 3sir_A Caspase; hydrolase; 2.6 53.0 24 0.00082 33.3 6.5 68 49-116 16-90 (259)
91 2fep_A Catabolite control prot 52.9 42 0.0014 30.8 8.2 79 49-132 13-92 (289)
92 3cxb_B Pleckstrin homology dom 52.7 8.3 0.00028 31.2 2.8 25 23-47 78-102 (112)
93 3c3k_A Alanine racemase; struc 52.4 46 0.0016 30.4 8.4 78 50-132 6-84 (285)
94 2dhk_A TBC1 domain family memb 52.3 12 0.00042 30.2 3.9 26 22-47 80-105 (119)
95 1e5d_A Rubredoxin\:oxygen oxid 52.2 75 0.0026 30.8 10.4 77 33-119 235-311 (402)
96 3clh_A 3-dehydroquinate syntha 51.2 6.1 0.00021 38.9 2.1 76 52-132 26-105 (343)
97 2da0_A 130-kDa phosphatidylino 50.9 13 0.00046 29.7 3.8 27 22-48 77-103 (114)
98 1pls_A Pleckstrin homology dom 50.5 16 0.00054 28.9 4.2 27 22-48 77-103 (113)
99 2rlo_A Centaurin-gamma 1; spli 50.5 9.7 0.00033 31.3 3.0 26 22-47 100-125 (128)
100 3brq_A HTH-type transcriptiona 50.5 65 0.0022 29.2 9.0 78 51-133 18-98 (296)
101 3ors_A N5-carboxyaminoimidazol 50.3 66 0.0023 28.4 8.4 68 64-134 11-82 (163)
102 4b4k_A N5-carboxyaminoimidazol 50.2 61 0.0021 29.1 8.2 67 64-133 30-100 (181)
103 1xmp_A PURE, phosphoribosylami 50.0 66 0.0022 28.6 8.3 67 64-133 19-89 (170)
104 3lkb_A Probable branched-chain 49.8 77 0.0026 30.3 9.9 98 26-134 122-221 (392)
105 4dzz_A Plasmid partitioning pr 49.8 75 0.0026 27.3 9.0 46 54-100 2-47 (206)
106 2iks_A DNA-binding transcripti 49.8 36 0.0012 31.2 7.2 78 50-131 18-96 (293)
107 2dkp_A Pleckstrin homology dom 49.7 12 0.0004 30.4 3.3 28 22-49 95-122 (128)
108 1dbq_A Purine repressor; trans 49.7 50 0.0017 30.0 8.1 76 51-131 6-82 (289)
109 3o1i_D Periplasmic protein TOR 49.6 33 0.0011 31.5 6.9 78 50-131 3-84 (304)
110 3lop_A Substrate binding perip 49.6 68 0.0023 30.3 9.4 98 25-134 120-219 (364)
111 3d8u_A PURR transcriptional re 49.5 35 0.0012 30.8 7.0 77 51-132 2-79 (275)
112 3egc_A Putative ribose operon 49.4 38 0.0013 31.0 7.3 77 50-131 6-83 (291)
113 1n57_A Chaperone HSP31, protei 49.4 25 0.00085 33.6 6.1 42 51-92 47-98 (291)
114 2lul_A Tyrosine-protein kinase 49.3 18 0.0006 31.4 4.6 38 22-63 97-134 (164)
115 3oow_A Phosphoribosylaminoimid 49.2 72 0.0025 28.3 8.5 67 64-133 13-83 (166)
116 3snr_A Extracellular ligand-bi 49.2 63 0.0021 30.2 8.9 98 25-134 114-213 (362)
117 1dro_A Beta-spectrin; cytoskel 49.0 12 0.0004 30.5 3.2 25 22-46 95-119 (122)
118 3jy6_A Transcriptional regulat 48.9 62 0.0021 29.3 8.6 79 50-134 5-84 (276)
119 3l7n_A Putative uncharacterize 48.9 43 0.0015 30.6 7.5 57 54-124 2-58 (236)
120 2h54_A Caspase-1; allosteric s 48.8 51 0.0017 29.3 7.6 71 53-123 43-120 (178)
121 1byk_A Protein (trehalose oper 48.5 43 0.0015 29.9 7.4 67 52-122 2-69 (255)
122 2pju_A Propionate catabolism o 48.5 50 0.0017 30.5 7.8 67 51-131 105-171 (225)
123 3aj4_A Pleckstrin homology dom 48.3 13 0.00046 29.3 3.4 25 22-46 87-111 (112)
124 3miz_A Putative transcriptiona 48.2 51 0.0018 30.3 8.0 70 50-122 11-81 (301)
125 1fgy_A GRP1; PH domain, signal 47.5 14 0.00048 29.7 3.5 26 22-47 96-121 (127)
126 3lwz_A 3-dehydroquinate dehydr 47.4 59 0.002 28.4 7.5 63 52-119 7-81 (153)
127 1o4v_A Phosphoribosylaminoimid 47.3 77 0.0026 28.5 8.4 67 64-133 21-91 (183)
128 2dn6_A KIAA0640 protein; PH do 47.2 12 0.0004 29.6 2.9 27 22-48 79-105 (115)
129 3kuu_A Phosphoribosylaminoimid 46.8 72 0.0025 28.4 8.1 73 54-133 14-90 (174)
130 2h31_A Multifunctional protein 46.8 2.5E+02 0.0084 28.5 13.3 74 54-134 267-345 (425)
131 1wgq_A FYVE, rhogef and PH dom 46.7 18 0.00062 28.4 3.9 26 22-47 79-104 (109)
132 2p0d_A RHO GTPase-activating p 46.5 15 0.00051 30.5 3.5 26 22-47 100-125 (129)
133 2d9v_A Pleckstrin homology dom 46.4 15 0.00052 30.2 3.6 27 22-48 90-116 (130)
134 1uqr_A 3-dehydroquinate dehydr 45.9 74 0.0025 27.8 7.9 44 74-121 34-77 (154)
135 3tla_A MCCF; serine protease, 45.5 21 0.00072 35.6 5.0 74 51-124 41-123 (371)
136 3tb6_A Arabinose metabolism tr 45.2 83 0.0028 28.4 8.9 78 53-134 16-98 (298)
137 1ujn_A Dehydroquinate synthase 45.2 21 0.00072 35.1 4.9 72 52-132 28-104 (348)
138 2d9y_A Pleckstrin homology dom 45.2 16 0.00053 29.0 3.3 26 22-47 85-110 (117)
139 2ab0_A YAJL; DJ-1/THIJ superfa 45.2 14 0.00046 33.2 3.3 63 52-123 2-78 (205)
140 4e08_A DJ-1 beta; flavodoxin-l 45.2 13 0.00043 32.9 3.0 67 50-122 3-78 (190)
141 3qk7_A Transcriptional regulat 45.1 52 0.0018 30.2 7.5 81 50-134 4-87 (294)
142 4hcj_A THIJ/PFPI domain protei 45.0 5.6 0.00019 35.4 0.6 50 75-124 27-82 (177)
143 1f4p_A Flavodoxin; electron tr 45.0 37 0.0013 28.0 5.9 53 54-118 2-55 (147)
144 2y7b_A Actin-binding protein a 44.8 18 0.00062 29.5 3.8 26 22-47 104-129 (134)
145 3m9w_A D-xylose-binding peripl 44.6 1E+02 0.0035 28.3 9.6 78 53-134 3-82 (313)
146 3brs_A Periplasmic binding pro 44.6 32 0.0011 31.3 5.9 77 51-131 4-86 (289)
147 3ipc_A ABC transporter, substr 44.5 83 0.0028 29.5 9.0 99 25-134 116-216 (356)
148 3lp6_A Phosphoribosylaminoimid 44.3 67 0.0023 28.7 7.5 73 54-133 9-85 (174)
149 1fao_A Dual adaptor of phospho 44.2 19 0.00066 29.0 3.8 26 22-47 88-113 (126)
150 3g1w_A Sugar ABC transporter; 44.0 67 0.0023 29.4 8.1 80 51-134 3-85 (305)
151 3trh_A Phosphoribosylaminoimid 43.8 73 0.0025 28.3 7.7 68 64-134 14-85 (169)
152 3kjx_A Transcriptional regulat 43.8 2.1E+02 0.0071 26.8 12.3 78 51-133 67-145 (344)
153 1x1g_A Pleckstrin 2; PH domain 43.6 15 0.00052 29.7 3.1 26 22-47 100-125 (129)
154 3sg0_A Extracellular ligand-bi 43.6 87 0.003 29.5 9.0 99 24-134 137-237 (386)
155 3hut_A Putative branched-chain 43.5 1.3E+02 0.0046 28.0 10.3 100 24-135 117-218 (358)
156 2i5f_A Pleckstrin; PH domain, 43.2 18 0.00062 28.2 3.4 24 22-45 85-108 (109)
157 3cwq_A Para family chromosome 43.1 65 0.0022 28.5 7.6 45 55-101 2-46 (209)
158 1u11_A PURE (N5-carboxyaminoim 43.1 93 0.0032 27.9 8.3 73 54-133 23-99 (182)
159 1btn_A Beta-spectrin; signal t 42.5 16 0.00053 28.4 2.9 22 22-43 84-105 (106)
160 1u9c_A APC35852; structural ge 42.3 24 0.00083 31.7 4.6 73 52-124 5-102 (224)
161 1pfk_A Phosphofructokinase; tr 41.7 13 0.00045 36.4 2.7 23 110-133 93-115 (320)
162 2d9x_A Oxysterol binding prote 41.7 16 0.00056 29.4 3.0 26 22-47 80-105 (120)
163 1zxx_A 6-phosphofructokinase; 41.7 13 0.00045 36.4 2.7 32 98-133 83-114 (319)
164 2coc_A FYVE, rhogef and PH dom 41.4 21 0.00073 29.1 3.6 26 22-47 82-107 (112)
165 3rcp_A Pleckstrin homology dom 41.4 16 0.00055 28.3 2.8 26 22-47 69-94 (103)
166 2rsg_A Collagen type IV alpha- 41.3 10 0.00035 29.1 1.6 23 22-44 70-92 (94)
167 1dyn_A Dynamin; signal transdu 41.1 14 0.00047 31.4 2.4 43 2-47 76-119 (125)
168 2iuf_A Catalase; oxidoreductas 41.0 15 0.0005 39.9 3.1 64 53-121 530-593 (688)
169 2vzf_A NADH-dependent FMN redu 40.9 61 0.0021 28.4 7.0 75 53-133 3-93 (197)
170 1v5p_A Pleckstrin homology dom 40.6 18 0.00062 30.0 3.1 25 22-46 96-120 (126)
171 2ark_A Flavodoxin; FMN, struct 40.5 43 0.0015 29.2 5.8 70 52-133 4-76 (188)
172 1wdv_A Hypothetical protein AP 40.4 25 0.00086 29.7 4.1 33 72-104 2-35 (152)
173 2fn9_A Ribose ABC transporter, 40.3 68 0.0023 29.1 7.5 77 53-133 3-81 (290)
174 3h11_A CAsp8 and FADD-like apo 40.1 38 0.0013 32.3 5.7 81 46-132 36-133 (272)
175 3kip_A 3-dehydroquinase, type 40.0 92 0.0031 27.6 7.6 67 51-120 13-92 (167)
176 3rg8_A Phosphoribosylaminoimid 39.8 1E+02 0.0035 27.0 7.9 69 64-134 10-82 (159)
177 2o20_A Catabolite control prot 39.8 90 0.0031 29.2 8.4 77 51-132 62-139 (332)
178 3h75_A Periplasmic sugar-bindi 39.8 1E+02 0.0035 29.0 8.8 76 56-133 6-84 (350)
179 1oj7_A Hypothetical oxidoreduc 39.0 32 0.0011 34.3 5.3 94 21-133 30-127 (408)
180 3ksm_A ABC-type sugar transpor 38.9 61 0.0021 29.0 6.8 73 59-134 6-83 (276)
181 4e5s_A MCCFLIKE protein (BA_56 38.8 48 0.0017 32.4 6.4 73 52-124 11-92 (331)
182 2yry_A Pleckstrin homology dom 38.8 22 0.00076 28.3 3.4 25 22-46 96-120 (122)
183 3uk7_A Class I glutamine amido 38.8 11 0.00038 37.4 1.8 90 29-124 181-295 (396)
184 2ohh_A Type A flavoprotein FPR 38.8 1E+02 0.0035 29.8 8.9 62 51-120 255-316 (404)
185 2x7x_A Sensor protein; transfe 38.5 82 0.0028 29.4 7.9 79 50-133 4-85 (325)
186 3hcw_A Maltose operon transcri 38.4 2.1E+02 0.007 26.0 10.6 97 32-136 117-216 (295)
187 3l49_A ABC sugar (ribose) tran 38.3 1.1E+02 0.0038 27.6 8.6 81 50-134 3-85 (291)
188 2rjo_A Twin-arginine transloca 38.1 67 0.0023 30.1 7.2 80 50-133 3-86 (332)
189 1wg7_A Dedicator of cytokinesi 38.1 23 0.00078 29.6 3.4 25 22-46 100-124 (150)
190 3bbl_A Regulatory protein of L 38.0 56 0.0019 29.8 6.5 78 51-132 3-84 (287)
191 3l6u_A ABC-type sugar transpor 37.6 94 0.0032 28.1 8.0 81 50-134 6-88 (293)
192 3rot_A ABC sugar transporter, 37.6 61 0.0021 29.7 6.7 76 54-133 5-84 (297)
193 3bil_A Probable LACI-family tr 37.5 77 0.0026 30.1 7.6 78 51-133 65-143 (348)
194 1qpz_A PURA, protein (purine n 37.1 1.6E+02 0.0056 27.4 9.8 70 50-123 56-126 (340)
195 3kke_A LACI family transcripti 37.1 87 0.003 28.8 7.7 80 50-133 13-93 (303)
196 2hna_A Protein MIOC, flavodoxi 36.9 46 0.0016 27.6 5.2 53 53-119 2-54 (147)
197 3rht_A (gatase1)-like protein; 36.4 26 0.0009 33.1 3.9 55 51-118 3-57 (259)
198 2fz5_A Flavodoxin; alpha/beta 36.0 65 0.0022 25.9 5.9 53 55-119 2-54 (137)
199 3fst_A 5,10-methylenetetrahydr 35.9 2.9E+02 0.01 26.4 11.4 90 29-123 33-122 (304)
200 1t5b_A Acyl carrier protein ph 35.6 60 0.002 28.1 6.0 39 53-91 2-43 (201)
201 1nbw_B Glycerol dehydratase re 35.6 1.4E+02 0.0048 24.8 7.7 67 53-124 6-72 (117)
202 3en0_A Cyanophycinase; serine 35.2 54 0.0018 31.5 5.9 63 53-123 57-122 (291)
203 8abp_A L-arabinose-binding pro 35.1 89 0.003 28.5 7.4 77 53-133 3-80 (306)
204 1ykg_A SIR-FP, sulfite reducta 35.1 30 0.001 29.8 3.7 69 52-132 9-80 (167)
205 3ot1_A 4-methyl-5(B-hydroxyeth 34.9 18 0.0006 32.6 2.3 67 50-122 7-82 (208)
206 3ej6_A Catalase-3; heme, hydro 34.8 47 0.0016 36.0 5.9 63 53-121 538-600 (688)
207 2rk3_A Protein DJ-1; parkinson 34.6 22 0.00075 31.4 2.9 64 52-123 3-78 (197)
208 1upq_A PEPP1; PH domain, phosp 34.6 23 0.00079 28.2 2.8 26 22-47 85-110 (123)
209 3gyb_A Transcriptional regulat 34.6 51 0.0017 29.8 5.5 69 50-123 3-71 (280)
210 2dtc_A RAL guanine nucleotide 34.5 30 0.001 29.1 3.6 27 22-48 88-114 (126)
211 3c3k_A Alanine racemase; struc 34.3 2.4E+02 0.0082 25.3 10.3 97 30-135 108-207 (285)
212 3hno_A Pyrophosphate-dependent 34.1 15 0.00051 37.4 1.8 27 97-126 93-119 (419)
213 1gqo_A Dehydroquinase; dehydra 33.9 71 0.0024 27.6 5.8 43 74-120 33-75 (143)
214 2uyg_A 3-dehydroquinate dehydr 33.9 76 0.0026 27.6 6.0 45 71-118 29-73 (149)
215 1pea_A Amidase operon; gene re 33.8 1.7E+02 0.0057 27.8 9.4 97 26-134 120-220 (385)
216 2wte_A CSA3; antiviral protein 33.8 1.1E+02 0.0038 28.4 7.7 73 51-125 33-108 (244)
217 2vk2_A YTFQ, ABC transporter p 33.7 67 0.0023 29.6 6.3 77 53-133 3-81 (306)
218 3n8k_A 3-dehydroquinate dehydr 33.5 67 0.0023 28.6 5.7 62 53-119 29-102 (172)
219 1x1f_A Signal-transducing adap 33.4 34 0.0012 29.4 3.8 25 22-46 89-113 (149)
220 3o21_A Glutamate receptor 3; p 33.4 1.6E+02 0.0054 28.4 9.2 76 51-133 129-207 (389)
221 2fvy_A D-galactose-binding per 33.3 1.3E+02 0.0045 27.3 8.2 77 53-133 3-82 (309)
222 4a3s_A 6-phosphofructokinase; 33.2 23 0.00078 34.6 2.9 22 110-132 92-113 (319)
223 1ycg_A Nitric oxide reductase; 33.1 1.5E+02 0.005 28.6 8.9 60 52-119 251-310 (398)
224 3cs3_A Sugar-binding transcrip 33.0 2E+02 0.0068 25.8 9.3 98 30-135 102-200 (277)
225 3o74_A Fructose transport syst 32.9 66 0.0023 28.8 5.9 79 52-134 2-81 (272)
226 3l4e_A Uncharacterized peptida 32.8 35 0.0012 31.0 3.9 63 53-122 28-90 (206)
227 1mkz_A Molybdenum cofactor bio 32.6 2.4E+02 0.0083 24.3 9.5 59 74-133 32-96 (172)
228 1btk_A Bruton'S tyrosine kinas 32.4 33 0.0011 30.0 3.6 27 22-48 108-134 (169)
229 2j59_M RHO-GTPase activating p 32.4 28 0.00095 29.8 3.1 25 22-46 87-111 (168)
230 3u80_A 3-dehydroquinate dehydr 32.3 57 0.0019 28.5 4.9 62 53-118 5-77 (151)
231 2hig_A 6-phospho-1-fructokinas 32.2 18 0.0006 37.6 2.0 68 53-126 130-204 (487)
232 1u5f_A SRC-associated adaptor 32.0 29 0.00099 29.0 3.1 26 22-47 95-120 (148)
233 2qu7_A Putative transcriptiona 31.9 78 0.0027 28.7 6.3 68 51-123 7-75 (288)
234 2lqo_A Putative glutaredoxin R 31.7 35 0.0012 26.8 3.3 33 72-104 17-49 (92)
235 3hbm_A UDP-sugar hydrolase; PS 31.5 49 0.0017 31.5 4.9 17 111-128 225-241 (282)
236 3uk7_A Class I glutamine amido 31.4 12 0.0004 37.2 0.5 68 51-124 11-102 (396)
237 3i09_A Periplasmic branched-ch 31.3 2.1E+02 0.007 27.0 9.5 97 26-134 120-218 (375)
238 2h0a_A TTHA0807, transcription 30.5 2.7E+02 0.0093 24.6 9.8 83 51-135 113-203 (276)
239 3l18_A Intracellular protease 30.3 17 0.00057 31.2 1.2 65 52-123 2-75 (168)
240 2i0f_A 6,7-dimethyl-8-ribityll 30.2 1.2E+02 0.004 26.6 6.7 81 53-134 13-105 (157)
241 3op6_A Uncharacterized protein 30.0 54 0.0019 27.9 4.5 54 73-127 5-69 (152)
242 2fep_A Catabolite control prot 29.9 1.9E+02 0.0063 26.3 8.6 98 30-135 117-218 (289)
243 2amj_A Modulator of drug activ 29.8 71 0.0024 28.5 5.5 62 52-118 12-77 (204)
244 3dbi_A Sugar-binding transcrip 29.8 2E+02 0.007 26.7 9.1 77 50-129 59-137 (338)
245 1sqs_A Conserved hypothetical 29.7 94 0.0032 28.2 6.4 37 53-90 2-40 (242)
246 1jx6_A LUXP protein; protein-l 29.5 3.4E+02 0.012 25.0 12.5 99 30-133 15-126 (342)
247 3uug_A Multiple sugar-binding 29.5 1.8E+02 0.0061 26.8 8.6 78 53-134 4-83 (330)
248 3clk_A Transcription regulator 29.4 1.1E+02 0.0037 27.8 6.9 76 51-131 7-84 (290)
249 3m3p_A Glutamine amido transfe 29.2 31 0.0011 32.3 3.0 60 52-125 3-62 (250)
250 3k4h_A Putative transcriptiona 29.1 93 0.0032 28.1 6.3 80 50-133 6-90 (292)
251 2hpv_A FMN-dependent NADH-azor 28.6 1.1E+02 0.0036 26.8 6.4 39 53-91 2-44 (208)
252 2h3h_A Sugar ABC transporter, 28.5 1.3E+02 0.0044 27.7 7.3 72 58-133 6-80 (313)
253 3lft_A Uncharacterized protein 28.4 1.2E+02 0.0042 27.7 7.2 48 70-120 18-71 (295)
254 3i45_A Twin-arginine transloca 28.4 2.4E+02 0.0082 26.7 9.5 78 51-134 141-222 (387)
255 1gtz_A 3-dehydroquinate dehydr 28.3 69 0.0024 28.1 4.8 46 74-123 39-84 (156)
256 3pzy_A MOG; ssgcid, seattle st 28.2 57 0.0019 28.4 4.4 58 74-133 31-93 (164)
257 3s99_A Basic membrane lipoprot 28.1 78 0.0027 31.0 5.9 77 50-132 24-105 (356)
258 2ywj_A Glutamine amidotransfer 27.7 79 0.0027 27.4 5.3 50 54-125 2-51 (186)
259 2f48_A Diphosphate--fructose-6 27.6 32 0.0011 36.3 3.0 70 53-127 105-182 (555)
260 2ys3_A UNC-112-related protein 27.6 93 0.0032 26.6 5.4 25 22-46 88-112 (137)
261 3h5o_A Transcriptional regulat 27.5 1.8E+02 0.0062 27.1 8.3 77 51-132 61-138 (339)
262 1tq8_A Hypothetical protein RV 27.3 2.4E+02 0.0083 23.4 8.3 57 68-128 79-137 (163)
263 3rf7_A Iron-containing alcohol 27.0 40 0.0014 33.6 3.5 100 20-133 27-130 (375)
264 2qh8_A Uncharacterized protein 26.9 1.3E+02 0.0043 27.8 7.0 66 51-121 7-79 (302)
265 3ctp_A Periplasmic binding pro 26.9 1.3E+02 0.0044 28.1 7.1 68 51-123 59-127 (330)
266 1wi1_A Calcium-dependent activ 26.7 55 0.0019 27.6 3.8 25 23-47 87-111 (126)
267 3iwt_A 178AA long hypothetical 26.7 1.4E+02 0.0048 25.8 6.8 58 74-132 44-107 (178)
268 1v88_A Oxysterol binding prote 26.6 30 0.001 28.9 2.2 25 23-47 101-125 (130)
269 1czn_A Flavodoxin; FMN binding 26.5 87 0.003 26.4 5.3 68 53-133 1-71 (169)
270 2c4w_A 3-dehydroquinate dehydr 26.5 1.3E+02 0.0043 26.9 6.3 42 74-118 42-85 (176)
271 3o74_A Fructose transport syst 26.4 2.7E+02 0.0092 24.5 9.0 81 51-134 119-202 (272)
272 2zki_A 199AA long hypothetical 26.4 59 0.002 28.2 4.2 37 52-91 4-40 (199)
273 1y5e_A Molybdenum cofactor bio 26.3 1.1E+02 0.0037 26.5 5.9 76 51-131 12-97 (169)
274 3g85_A Transcriptional regulat 26.1 65 0.0022 29.2 4.6 72 50-124 9-81 (289)
275 2fsv_C NAD(P) transhydrogenase 26.1 1.5E+02 0.0052 26.9 6.8 74 39-134 67-140 (203)
276 1jye_A Lactose operon represso 26.1 1.4E+02 0.0049 28.1 7.3 66 51-120 60-127 (349)
277 3e3m_A Transcriptional regulat 25.9 1.8E+02 0.0063 27.3 8.0 78 51-133 69-147 (355)
278 3h5l_A Putative branched-chain 25.9 4.4E+02 0.015 25.1 12.0 104 24-133 134-242 (419)
279 1q7r_A Predicted amidotransfer 25.8 77 0.0026 28.5 5.0 52 53-126 24-75 (219)
280 1pno_A NAD(P) transhydrogenase 25.7 1.4E+02 0.0048 26.5 6.3 73 35-125 40-112 (180)
281 2nv0_A Glutamine amidotransfer 25.6 79 0.0027 27.6 4.9 52 53-126 2-53 (196)
282 1h05_A 3-dehydroquinate dehydr 25.5 74 0.0025 27.6 4.4 43 73-119 34-76 (146)
283 2pjk_A 178AA long hypothetical 25.4 1.2E+02 0.0041 26.6 6.1 58 74-133 44-108 (178)
284 3sho_A Transcriptional regulat 25.3 3.1E+02 0.011 23.2 9.5 85 30-133 25-109 (187)
285 3fse_A Two-domain protein cont 25.2 21 0.00073 35.5 1.1 68 51-124 9-86 (365)
286 2b99_A Riboflavin synthase; lu 25.2 1.9E+02 0.0063 25.3 7.1 76 53-134 3-87 (156)
287 1ydg_A Trp repressor binding p 25.2 2.2E+02 0.0075 24.7 7.9 39 51-91 5-43 (211)
288 3gv0_A Transcriptional regulat 25.0 1.3E+02 0.0043 27.4 6.5 80 50-133 6-87 (288)
289 3k9g_A PF-32 protein; ssgcid, 25.0 91 0.0031 28.3 5.4 50 50-101 24-73 (267)
290 2q62_A ARSH; alpha/beta, flavo 24.7 1.4E+02 0.0048 27.6 6.7 78 51-134 33-123 (247)
291 2is8_A Molybdopterin biosynthe 24.7 1.3E+02 0.0044 25.9 6.1 57 74-132 25-88 (164)
292 3kbq_A Protein TA0487; structu 24.5 89 0.003 27.6 5.0 60 73-134 26-90 (172)
293 2fvy_A D-galactose-binding per 24.2 3.9E+02 0.013 23.9 9.8 105 28-134 110-225 (309)
294 3hcw_A Maltose operon transcri 24.2 55 0.0019 30.1 3.8 80 50-133 5-89 (295)
295 2iss_D Glutamine amidotransfer 24.1 1.2E+02 0.004 26.9 5.9 54 51-126 19-72 (208)
296 3nq4_A 6,7-dimethyl-8-ribityll 23.9 1.7E+02 0.0059 25.4 6.6 79 53-134 13-104 (156)
297 2a5l_A Trp repressor binding p 23.9 1.1E+02 0.0037 26.4 5.5 36 53-90 6-41 (200)
298 3g23_A Peptidase U61, LD-carbo 23.9 1.5E+02 0.0051 28.0 6.8 76 53-131 3-88 (274)
299 3rfq_A Pterin-4-alpha-carbinol 23.8 1.5E+02 0.0051 26.4 6.4 59 73-132 52-115 (185)
300 3clk_A Transcription regulator 23.7 2.7E+02 0.0093 25.0 8.6 81 51-135 124-208 (290)
301 3e61_A Putative transcriptiona 23.6 1E+02 0.0035 27.7 5.4 76 51-133 7-84 (277)
302 3noq_A THIJ/PFPI family protei 23.6 26 0.00088 32.2 1.3 67 51-124 4-78 (231)
303 1t0i_A YLR011WP; FMN binding p 23.3 1.5E+02 0.0051 25.4 6.3 36 54-90 2-44 (191)
304 1rtt_A Conserved hypothetical 23.2 60 0.002 28.2 3.6 60 53-119 7-80 (193)
305 3ttv_A Catalase HPII; heme ori 23.0 23 0.00078 38.7 0.9 67 53-124 601-673 (753)
306 3cs3_A Sugar-binding transcrip 23.0 1.9E+02 0.0065 25.9 7.2 73 50-133 6-78 (277)
307 1vpq_A Hypothetical protein TM 22.8 1E+02 0.0035 29.2 5.4 47 29-80 224-270 (273)
308 1djl_A Transhydrogenase DIII; 22.7 1.6E+02 0.0056 26.8 6.3 72 39-128 66-137 (207)
309 1d4o_A NADP(H) transhydrogenas 22.6 1.7E+02 0.0057 26.2 6.2 76 35-128 39-114 (184)
310 2h3h_A Sugar ABC transporter, 22.6 4.4E+02 0.015 23.9 11.1 98 30-134 105-204 (313)
311 2dri_A D-ribose-binding protei 22.5 1.3E+02 0.0045 26.9 6.0 60 70-132 18-79 (271)
312 1hyw_A GPW, head-TO-tail joini 22.5 82 0.0028 23.7 3.7 30 22-51 31-60 (68)
313 2fzv_A Putative arsenical resi 22.5 1.3E+02 0.0045 28.6 6.1 78 51-134 57-148 (279)
314 2vrn_A Protease I, DR1199; cys 22.4 36 0.0012 29.6 2.0 66 51-123 8-87 (190)
315 3jvd_A Transcriptional regulat 22.4 1E+02 0.0035 29.0 5.4 66 51-120 63-128 (333)
316 3lzd_A DPH2; diphthamide biosy 22.3 2.4E+02 0.0083 28.0 8.2 63 50-121 262-324 (378)
317 3b6i_A Flavoprotein WRBA; flav 22.1 1.3E+02 0.0043 25.9 5.6 38 53-92 2-40 (198)
318 2hi1_A 4-hydroxythreonine-4-ph 22.1 1.3E+02 0.0046 29.4 6.1 79 31-119 184-270 (330)
319 2rov_A RHO-associated protein 22.0 70 0.0024 26.1 3.6 25 22-46 91-115 (117)
320 3d02_A Putative LACI-type tran 22.0 2E+02 0.0068 26.0 7.2 76 53-132 5-83 (303)
321 1v61_A RAC/CDC42 guanine nucle 21.7 66 0.0023 27.2 3.4 26 22-47 102-127 (132)
322 1pjq_A CYSG, siroheme synthase 21.7 4.3E+02 0.015 26.5 10.2 74 53-134 13-95 (457)
323 3o8l_A 6-phosphofructokinase, 21.7 37 0.0013 37.2 2.2 25 98-125 99-123 (762)
324 3d54_D Phosphoribosylformylgly 21.5 51 0.0017 29.1 2.8 52 52-123 2-53 (213)
325 2ywx_A Phosphoribosylaminoimid 21.4 2.7E+02 0.0094 24.2 7.3 65 64-133 7-74 (157)
326 3r7f_A Aspartate carbamoyltran 21.3 3E+02 0.01 26.4 8.5 20 209-228 146-165 (304)
327 4fyk_A Deoxyribonucleoside 5'- 21.2 1.2E+02 0.004 26.3 5.0 74 54-132 3-92 (152)
328 3gbv_A Putative LACI-family tr 21.2 4.3E+02 0.015 23.5 9.4 98 30-134 117-221 (304)
329 2fn9_A Ribose ABC transporter, 21.1 4.4E+02 0.015 23.4 10.0 102 30-134 107-213 (290)
330 4f11_A Gamma-aminobutyric acid 21.0 3.7E+02 0.013 25.8 9.4 97 25-134 133-229 (433)
331 2o20_A Catabolite control prot 21.0 2.6E+02 0.009 25.8 8.0 95 30-135 164-262 (332)
332 1dbq_A Purine repressor; trans 20.9 2.2E+02 0.0074 25.5 7.2 97 30-135 110-210 (289)
333 2g2c_A Putative molybdenum cof 20.8 1.6E+02 0.0054 25.4 5.8 57 74-132 29-95 (167)
334 3huu_A Transcription regulator 20.7 2E+02 0.0067 26.3 6.9 105 25-139 123-229 (305)
335 3opy_A 6-phosphofructo-1-kinas 20.7 46 0.0016 37.4 2.7 18 110-127 303-320 (989)
336 3e3m_A Transcriptional regulat 20.7 4.9E+02 0.017 24.2 10.0 100 29-136 170-274 (355)
337 3sty_A Methylketone synthase 1 20.6 1.7E+02 0.0057 25.2 6.1 35 51-88 10-44 (267)
338 2qip_A Protein of unknown func 20.4 3.9E+02 0.013 22.6 8.5 60 74-134 65-131 (165)
339 5nul_A Flavodoxin; electron tr 20.3 1.1E+02 0.0038 24.7 4.5 52 56-119 2-53 (138)
340 3hs3_A Ribose operon repressor 20.3 3.8E+02 0.013 23.9 8.8 86 50-139 120-205 (277)
341 3opy_B 6-phosphofructo-1-kinas 20.2 41 0.0014 37.7 2.2 25 98-125 266-290 (941)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=1.8e-44 Score=358.66 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=187.8
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
..+|+++||+||.||++++.+.|+++++.|++++++++++.|++++||.++++++. +++|.||++|||||+|||+|
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~----~~~d~vv~~GGDGTl~~v~~ 81 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA----SKVDLIIVFGGDGTVFECTN 81 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT----TTCSEEEEEECHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh----cCCCEEEEEccchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998873 47999999999999999999
Q ss_pred hhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCC
Q 037501 130 GFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSE 209 (438)
Q Consensus 130 GL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (438)
+|+.+. .
T Consensus 82 ~l~~~~-------------------------------------------------------------------------~ 88 (304)
T 3s40_A 82 GLAPLE-------------------------------------------------------------------------I 88 (304)
T ss_dssp HHTTCS-------------------------------------------------------------------------S
T ss_pred HHhhCC-------------------------------------------------------------------------C
Confidence 998641 2
Q ss_pred CceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh-
Q 037501 210 RFRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES- 288 (438)
Q Consensus 210 ~~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s- 288 (438)
.+|||+||+||+|+||++|+.+.|+.+|+..|+.|+++++|++++++ +||+|++|+||+|+|+.+.
T Consensus 89 ~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i~~g~~~~iDlg~v~~-------------~~F~~~~~~G~da~v~~~~~ 155 (304)
T 3s40_A 89 RPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANG-------------QHFLNFWGIGLVSEVSNNID 155 (304)
T ss_dssp CCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHTTCCEEEEEEEEETT-------------EEESSEEEEC----------
T ss_pred CCcEEEecCCcHHHHHHHcCCCccHHHHHHHHHhCCeEEEEEEEECC-------------EEEEEEEeehHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999974 8999999999999999875
Q ss_pred -hhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCC
Q 037501 289 -EKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVD 367 (438)
Q Consensus 289 -e~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~ 367 (438)
+.++++|+++|.+++++.|+++++|+++|++++..
T Consensus 156 ~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~~-------------------------------------------- 191 (304)
T 3s40_A 156 AEEKAKLGKIGYYLSTIRTVKNAETFPVKITYDGQV-------------------------------------------- 191 (304)
T ss_dssp --------CHHHHTTTC------CCEEEEEEETTEE--------------------------------------------
T ss_pred HHHhhcCCchHHHHHHHHHHhhcCCceEEEEECCEE--------------------------------------------
Confidence 45678999999999999999999999999885421
Q ss_pred CCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCcc
Q 037501 368 MSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRA 434 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~ 434 (438)
+++++.++.++|.+++|+.. .++|.|.++||.|||+++++.++.
T Consensus 192 ---------------------~~~~~~~v~v~N~~~~Ggg~--~~~p~a~~~DG~Ldv~~v~~~~~~ 235 (304)
T 3s40_A 192 ---------------------YEDEAVLVMVGNGEYLGGIP--SFIPNVKCDDGTLDIFVVKSTGIQ 235 (304)
T ss_dssp ---------------------EEEEEEEEEEECSSEETTEE--CSSTTCCTTSSCEEEEEEETTCHH
T ss_pred ---------------------EEeEEEEEEEECCCcCCCCc--ccCCCCcCCCCEEEEEEEccCCHH
Confidence 36788999999999999753 388999999999999999999864
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=1.5e-40 Score=334.49 Aligned_cols=230 Identities=24% Similarity=0.313 Sum_probs=197.0
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
+|+++||+||.||++++.++|+++++.|+++++++++..|++++|+.++++++. .+++|.||++|||||||||+|+|
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~---~~~~d~vvv~GGDGTv~~v~~~l 100 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAM---HENYDVLIAAGGDGTLNEVVNGI 100 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHT---TTTCSEEEEEECHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHh---hcCCCEEEEEcCchHHHHHHHHH
Confidence 578999999999999998999999999999999999999999999999987764 36799999999999999999999
Q ss_pred hhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 037501 132 LSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERF 211 (438)
Q Consensus 132 ~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (438)
+... ..+
T Consensus 101 ~~~~-------------------------------------------------------------------------~~~ 107 (337)
T 2qv7_A 101 AEKP-------------------------------------------------------------------------NRP 107 (337)
T ss_dssp TTCS-------------------------------------------------------------------------SCC
T ss_pred HhCC-------------------------------------------------------------------------CCC
Confidence 7531 267
Q ss_pred eEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCceeEEEEeeeccchhhhhhhh--h
Q 037501 212 RFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVHYTASFSGYGFYGDVISES--E 289 (438)
Q Consensus 212 ~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~ryf~~~~~~G~~adV~~~s--e 289 (438)
|||+||+||+|+||++|+.+.++.+++..|+.|+.+++|++++++ |||++++++||+|+|+.+. +
T Consensus 108 pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~-------------r~fl~~~~~G~~a~v~~~~~~~ 174 (337)
T 2qv7_A 108 KLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNN-------------RYFINLAAGGQLTQVSYETPSK 174 (337)
T ss_dssp EEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETT-------------EEESSEEEEECBCC--------
T ss_pred cEEEecCCcHhHHHHHcCCCCCHHHHHHHHHcCCcEEEEEEEECC-------------EEEEEEeeecccHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999964 8999999999999999875 3
Q ss_pred hhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCCCC
Q 037501 290 KYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVDMS 369 (438)
Q Consensus 290 ~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~~~ 369 (438)
.++++|+++|.+++++.+++.+.|+++|++++..
T Consensus 175 ~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~~---------------------------------------------- 208 (337)
T 2qv7_A 175 LKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNV---------------------------------------------- 208 (337)
T ss_dssp -----CGGGSCCCTTTTGGGBCCEEEEEEETTEE----------------------------------------------
T ss_pred HHhccChHHHHHHHHHHHHhCCCccEEEEECCEE----------------------------------------------
Confidence 4677899999999999999999999999886421
Q ss_pred CCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCccccC
Q 037501 370 STATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRALYL 437 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~~~l 437 (438)
++++++++.++|.+++++.. .++|.|.++||.||+++++..+++.++
T Consensus 209 -------------------~~~~~~~v~v~n~~~~gGg~--~i~P~a~~~DG~ldv~~v~~~~~~~l~ 255 (337)
T 2qv7_A 209 -------------------FQGEALLFFLGLTNSMAGFE--KLVPDAKLDDGYFTLIIVEKSNLAELG 255 (337)
T ss_dssp -------------------EEEEEEEEEEESSCCCSSCS--CSSTTCCSSSSCEEEEEEECCCHHHHH
T ss_pred -------------------EEeeEEEEEEECCCCCCCCC--ccCCCCcCCCCeEEEEEEccCCHHHHH
Confidence 36788999999999988752 488999999999999999998877653
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=3.8e-39 Score=323.96 Aligned_cols=226 Identities=18% Similarity=0.217 Sum_probs=190.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
++|+++||+||.||++ +.|+++.+.|+++++++++..|++++|+.++++++.. +++|.||++||||||+||+|+
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~---~~~d~vvv~GGDGTl~~v~~~ 101 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARK---FGVATVIAGGGDGTINEVSTA 101 (332)
T ss_dssp --CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHH---HTCSEEEEEESHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHh---cCCCEEEEEccchHHHHHHHH
Confidence 3578999999999987 5688899999999999999999999999998877642 568999999999999999999
Q ss_pred hhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCC
Q 037501 131 FLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSER 210 (438)
Q Consensus 131 L~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (438)
|..+.. ...
T Consensus 102 l~~~~~-----------------------------------------------------------------------~~~ 110 (332)
T 2bon_A 102 LIQCEG-----------------------------------------------------------------------DDI 110 (332)
T ss_dssp HHHCCS-----------------------------------------------------------------------SCC
T ss_pred Hhhccc-----------------------------------------------------------------------CCC
Confidence 986420 026
Q ss_pred ceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEEeeEEEEeccccccccCCCCcee-EEEEeeeccchhhhhhh--
Q 037501 211 FRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVCLDIAQVVRWKATATSKVEPLVH-YTASFSGYGFYGDVISE-- 287 (438)
Q Consensus 211 ~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~lDv~~v~~~~~~~~~~~~~~~r-yf~~~~~~G~~adV~~~-- 287 (438)
+|||+||+||+|+||++++.+.++.+++..|+.|+.+++|++++++ | ||++++++||+|+|..+
T Consensus 111 ~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~~g~~~~iDlg~v~~-------------r~~fl~~~~~G~da~v~~~~~ 177 (332)
T 2bon_A 111 PALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNK-------------QTCFINMATGGFGTRITTETP 177 (332)
T ss_dssp CEEEEEECSSSCHHHHHTTCCSSHHHHHHHHHHSEEEEEEEEEETT-------------SCEESSEEEEEEEEEC-----
T ss_pred CeEEEecCcCHHHHHHhcCCCCCHHHHHHHHHcCCeEEeeEEEECC-------------ceEEEEEEeECccHHHHHHhh
Confidence 7899999999999999999899999999999999999999999974 5 99999999999999875
Q ss_pred hhhhcccCchHHHHHHHHHHHhCCceEEEEEEeccccccccccCCCCCcccccccccCCCccccceecccccccCCCCCC
Q 037501 288 SEKYRWMGPKRYDYAGTKVFLRHRSYEAEIAYLEVDAEHTNSVSNKGYSCSRAQTFRNSNKCERVICRRNCNICNTNSVD 367 (438)
Q Consensus 288 se~~r~lG~~rY~~~~~~~l~~~~~y~~~I~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~c~~~c~~c~~~~~~ 367 (438)
.+.++++|+++|.+++++.+++.++|+++|++++.
T Consensus 178 ~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~dg~--------------------------------------------- 212 (332)
T 2bon_A 178 EKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENF--------------------------------------------- 212 (332)
T ss_dssp -----CCHHHHHHHHHTSCEEEEECEEEEEEETTE---------------------------------------------
T ss_pred HHhHhcccHHHHHHHHHHHHhhCCCeeEEEEECCE---------------------------------------------
Confidence 35567899999999999999999999999887532
Q ss_pred CCCCcCCCCCCCCCCCCceEEEeccEEEEEEeecCCcCCCCCCCcCccCccCCCeEEEEEEcCCCcc
Q 037501 368 MSSTATSRTPYFRPEEARWLRSKGRFLSVGAAIISNRNERAPDGLVVDAHLSDGFMHLILIKDCPRA 434 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~W~~~~g~f~~v~~~n~s~~~~~ap~~l~P~A~l~DG~ldlvlvr~~s~~ 434 (438)
. ++++++++.++|.+++++.. .++|.|.++||.||+++++.. ++
T Consensus 213 -----------------~---~~~~~~~v~v~N~~~~ggg~--~i~P~a~~~DG~Ldv~iv~~~-~~ 256 (332)
T 2bon_A 213 -----------------H---WQGDALVIGIGNGRQAGGGQ--QLCPNALINDGLLQLRIFTGD-EI 256 (332)
T ss_dssp -----------------E---EEEEESEEEEESSSCBTTTB--CSCTTCCTTSSCEEEEEECCS-SC
T ss_pred -----------------E---EEEEEEEEEEECCCccCCCc--ccCCCCCCCCCeEEEEEECCH-HH
Confidence 1 25778888999999988753 388999999999999999988 54
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.37 E-value=4e-13 Score=131.91 Aligned_cols=113 Identities=15% Similarity=0.064 Sum_probs=76.9
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh----HHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ----AFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h----a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
+|+++||+||.++ ++.+.++++...|++.|+++.+..|..... ...+..+. ...++|.||++|||||++++
T Consensus 5 mkki~ii~np~~~--~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~vi~~GGDGT~l~a 79 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAE---IGQQADLAVVVGGDGNMLGA 79 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHH---HHHHCSEEEECSCHHHHHHH
T ss_pred CcEEEEEEcCCCH--HHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhh---cccCCCEEEEEcCcHHHHHH
Confidence 5899999999864 455778899999999999887665431110 00000111 11358999999999999999
Q ss_pred HHhhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCC
Q 037501 128 LNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIP 207 (438)
Q Consensus 128 vNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (438)
++++...
T Consensus 80 ~~~~~~~------------------------------------------------------------------------- 86 (292)
T 2an1_A 80 ARTLARY------------------------------------------------------------------------- 86 (292)
T ss_dssp HHHHTTS-------------------------------------------------------------------------
T ss_pred HHHhhcC-------------------------------------------------------------------------
Confidence 9999753
Q ss_pred CCCceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCe
Q 037501 208 SERFRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKR 246 (438)
Q Consensus 208 ~~~~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~ 246 (438)
..+.||| |+||.|.|+. +. +.++.+++..|+.|+.
T Consensus 87 -~~P~lGI-~~Gt~gfla~-~~-~~~~~~al~~i~~g~~ 121 (292)
T 2an1_A 87 -DINVIGI-NRGNLGFLTD-LD-PDNALQQLSDVLEGRY 121 (292)
T ss_dssp -SCEEEEB-CSSSCCSSCC-BC-TTSHHHHHHHHHTTCE
T ss_pred -CCCEEEE-ECCCcccCCc-CC-HHHHHHHHHHHHcCCC
Confidence 1245787 7999666664 54 8889999999999986
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.13 E-value=1.4e-10 Score=112.31 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=73.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+|++||+||.+|++ +.++.+++...|+ +++++ + . + +. ....+|.||++|||||++++++++.
T Consensus 1 mki~ii~Np~~~~~-~~~~~~~i~~~l~--~~~~~---~-~--~------~~---~~~~~D~vv~~GGDGTll~~a~~~~ 62 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLKEKISKEHE--VIEFG---E-A--N------AP---GRVTADLIVVVGGDGTVLKAAKKAA 62 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHHHHHTTTSE--EEEEE---E-S--S------SC---SCBCCSEEEEEECHHHHHHHHTTBC
T ss_pred CEEEEEEeCCCchH-HHHHHHHHHHHhc--CCcee---c-c--c------cc---ccCCCCEEEEEeCcHHHHHHHHHhC
Confidence 36899999999987 7777777877776 54432 2 1 2 11 2357899999999999999999885
Q ss_pred hcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCce
Q 037501 133 SSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFR 212 (438)
Q Consensus 133 ~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (438)
. . .+.
T Consensus 63 ~-~--------------------------------------------------------------------------~Pi 67 (258)
T 1yt5_A 63 D-G--------------------------------------------------------------------------TPM 67 (258)
T ss_dssp T-T--------------------------------------------------------------------------CEE
T ss_pred C-C--------------------------------------------------------------------------CCE
Confidence 4 2 234
Q ss_pred EEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeE
Q 037501 213 FGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRV 247 (438)
Q Consensus 213 lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~ 247 (438)
|||. .||.+-++ .+. +.+..+++..++.|+.+
T Consensus 68 lGIn-~G~~Gfl~-~~~-~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 68 VGFK-AGRLGFLT-SYT-LDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp EEEE-SSSCCSSC-CBC-GGGHHHHHHHHHTTCCE
T ss_pred EEEE-CCCCCccC-cCC-HHHHHHHHHHHHcCCce
Confidence 8875 99995554 564 78899999999999764
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=98.92 E-value=1.1e-09 Score=108.59 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=78.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh----------------HHHHHHHhhhhhcCCCcE
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ----------------AFDVMASTKNKELSSYDG 114 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h----------------a~~~~~~~~~~~~~~~d~ 114 (438)
.+|+++||+||.++ ++.+.++++...|++.|+++.+..++.... +..+.+. +.....+|.
T Consensus 3 ~m~ki~iI~n~~~~--~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~d~ 78 (307)
T 1u0t_A 3 AHRSVLLVVHTGRD--EATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDAD--QHAADGCEL 78 (307)
T ss_dssp --CEEEEEESSSGG--GGSHHHHHHHHHHHTTTCEEEEEC-------------------------------------CCC
T ss_pred CCCEEEEEEeCCCH--HHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccc--cccccCCCE
Confidence 36899999999885 445678899999999999888776654321 1111111 012357899
Q ss_pred EEEEcCCchHHHHHHhhhhcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCC
Q 037501 115 VLAVGGDGFFNEILNGFLSSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSR 194 (438)
Q Consensus 115 IV~vGGDGTv~EVvNGL~~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~ 194 (438)
||++|||||++++++.+....
T Consensus 79 vi~~GGDGT~l~a~~~~~~~~----------------------------------------------------------- 99 (307)
T 1u0t_A 79 VLVLGGDGTFLRAAELARNAS----------------------------------------------------------- 99 (307)
T ss_dssp EEEEECHHHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred EEEEeCCHHHHHHHHHhccCC-----------------------------------------------------------
Confidence 999999999999999987541
Q ss_pred CCCCCCCCCCCCCCCCceEEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeEE
Q 037501 195 LPNSNQDTDFRIPSERFRFGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRVC 248 (438)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~~ 248 (438)
.+.||| +.||.|.|+. + .+.++.+++..++.|+.+.
T Consensus 100 ---------------~pvlgi-~~G~~gfl~~-~-~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 100 ---------------IPVLGV-NLGRIGFLAE-A-EAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp ---------------CCEEEE-ECSSCCSSCS-E-EGGGHHHHHHHHHHTCCEE
T ss_pred ---------------CCEEEE-eCCCCccCcc-c-CHHHHHHHHHHHHcCCcEE
Confidence 234775 7999987773 4 3678888888899887644
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=98.82 E-value=5.5e-09 Score=101.75 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+++.+|+||. +++.+.++++...|++.|++++ ..++|.||++|||||++++++.+.
T Consensus 1 mki~ii~n~~---~~~~~~~~~l~~~l~~~g~~v~---------------------~~~~D~vv~lGGDGT~l~aa~~~~ 56 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLRLNMIAGFGEYDMEYD---------------------DVEPEIVISIGGDGTFLSAFHQYE 56 (272)
T ss_dssp CEEEEEECCS---HHHHHHHHHHHHHHTTSSCEEC---------------------SSSCSEEEEEESHHHHHHHHHHTG
T ss_pred CEEEEEECCC---HHHHHHHHHHHHHHHHCCCEeC---------------------CCCCCEEEEEcCcHHHHHHHHHHh
Confidence 4689999963 4566778889999999998761 146899999999999999999986
Q ss_pred hcccCCCCCCCCCCccCCCCCCCCCCCCccccccccCCcCCccCccCCCCccccccccCCCCCCCCCCCCCCCCCCCCce
Q 037501 133 SSRYKAPYPPAPAGFVHPVGNDHCSSDHDLNETVTETSQHDEDQSHQDQSPLLGSEQYHGSRLPNSNQDTDFRIPSERFR 212 (438)
Q Consensus 133 ~~~~~~~~~~~p~g~~~~g~~n~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (438)
... ..+|
T Consensus 57 ~~~-------------------------------------------------------------------------~~~P 63 (272)
T 2i2c_A 57 ERL-------------------------------------------------------------------------DEIA 63 (272)
T ss_dssp GGT-------------------------------------------------------------------------TTCE
T ss_pred hcC-------------------------------------------------------------------------CCCC
Confidence 531 1234
Q ss_pred -EEEecCCChhHHHHHcCCCCCHHHHHHHHHcCCeE
Q 037501 213 -FGIIPAGSTDAIVICTTGARDPVTSALHIVLGKRV 247 (438)
Q Consensus 213 -lGiIP~GSgN~~A~sl~g~~d~~~aa~~i~~g~~~ 247 (438)
||| |.|| ++|+..+. +.+..+++..++.|+.+
T Consensus 64 ilGI-n~G~-lgfl~~~~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 64 FIGI-HTGH-LGFYADWR-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp EEEE-ESSS-CCSSCCBC-GGGHHHHHHHHHTTCCE
T ss_pred EEEE-eCCC-CCcCCcCC-HHHHHHHHHHHHcCCCE
Confidence 776 9999 66877775 77888888889998754
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.91 E-value=4.8e-06 Score=85.02 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHh------------------hhhhcCC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAST------------------KNKELSS 111 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~------------------~~~~~~~ 111 (438)
..+|+++||.||. +..+.+..+++...|...+..+++++.+...+ ++...+ .+.....
T Consensus 39 ~~~k~V~II~n~~--~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T 3afo_A 39 NPLQNVYITKKPW--TPSTREAMVEFITHLHESYPEVNVIVQPDVAE--EISQDFKSPLENDPNRPHILYTGPEQDIVNR 114 (388)
T ss_dssp SCCCEEEEEECTT--CHHHHHHHHHHHHHHHHHCTTCEEECCHHHHH--HHHTTCCSCGGGCTTSCEEEEECCHHHHHHH
T ss_pred CCCcEEEEEEeCC--CHHHHHHHHHHHHHHHHhCCCeEEEEeCchhh--hhhhhccccccccccccccccccchhhcccC
Confidence 3579999999987 34566777888899988833344444432221 111000 0001135
Q ss_pred CcEEEEEcCCchHHHHHHhhhh
Q 037501 112 YDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 112 ~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+|.||++|||||+..++..+..
T Consensus 115 ~DlVIvlGGDGTlL~aa~~~~~ 136 (388)
T 3afo_A 115 TDLLVTLGGDGTILHGVSMFGN 136 (388)
T ss_dssp CSEEEEEESHHHHHHHHHTTTT
T ss_pred CCEEEEEeCcHHHHHHHHHhcc
Confidence 7999999999999999987754
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.16 E-value=0.0055 Score=59.66 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=42.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
..++.|+.||..- .+++...|++.|+++.+. ++... .....|.||++|||||+-.++..+
T Consensus 29 ~mki~iv~~~~~~-------~~~l~~~L~~~g~~v~~~--~~~~~-----------~~~~~DlvIvlGGDGT~L~aa~~~ 88 (278)
T 1z0s_A 29 GMRAAVVYKTDGH-------VKRIEEALKRLEVEVELF--NQPSE-----------ELENFDFIVSVGGDGTILRILQKL 88 (278)
T ss_dssp -CEEEEEESSSTT-------HHHHHHHHHHTTCEEEEE--SSCCG-----------GGGGSSEEEEEECHHHHHHHHTTC
T ss_pred ceEEEEEeCCcHH-------HHHHHHHHHHCCCEEEEc--ccccc-----------ccCCCCEEEEECCCHHHHHHHHHh
Confidence 4579999997643 567888999999876542 22111 124679999999999998887554
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=94.21 E-value=0.19 Score=50.67 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=47.4
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHH---------Hh-----h-hhhcCCCcE
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMA---------ST-----K-NKELSSYDG 114 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~---------~~-----~-~~~~~~~d~ 114 (438)
..+|+++||--|.. .......+++...|...|+++-+- .+-+.+ ..+.. .. . +...+..|.
T Consensus 36 ~~~k~I~iv~K~~~--~~~~~~~~~l~~~L~~~~~~V~ve-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 111 (365)
T 3pfn_A 36 KSPKSVLVIKKMRD--ASLLQPFKELCTHLMEENMIVYVE-KKVLED-PAIASDESFGAVKKKFCTFREDYDDISNQIDF 111 (365)
T ss_dssp SCCCEEEEEECTTC--GGGHHHHHHHHHHHHHTSCEEEEE-HHHHHS-HHHHHCSTTHHHHHHCEEECTTTCCCTTTCSE
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEe-hHHhhh-hccccccccccccccccccccChhhcccCCCE
Confidence 47899999987654 345566678888888888655322 111111 01110 00 0 001246899
Q ss_pred EEEEcCCchHHHHHHhh
Q 037501 115 VLAVGGDGFFNEILNGF 131 (438)
Q Consensus 115 IV~vGGDGTv~EVvNGL 131 (438)
||++||||||=.++.-+
T Consensus 112 vI~lGGDGT~L~aa~~~ 128 (365)
T 3pfn_A 112 IICLGGDGTLLYASSLF 128 (365)
T ss_dssp EEEESSTTHHHHHHHHC
T ss_pred EEEEcChHHHHHHHHHh
Confidence 99999999998887654
No 11
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=91.97 E-value=0.74 Score=46.27 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=62.1
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC------
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA------ 94 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~------ 94 (438)
+..+.|.....+.+..+ +.. . +|++|+.++... +.+++|...|+.+|+++.+++-...
T Consensus 23 ~~~I~~G~g~l~~l~~~-------l~~---~-~rvlIVtd~~v~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~ 86 (368)
T 3qbe_A 23 PYPVVIGTGLLDELEDL-------LAD---R-HKVAVVHQPGLA-----ETAEEIRKRLAGKGVDAHRIEIPDAEAGKDL 86 (368)
T ss_dssp CEEEEEESCCHHHHHHH-------HTT---C-SEEEEEECGGGH-----HHHHHHHHHHHHTTCEEEEEECCSGGGGGBH
T ss_pred CceEEEcCCHHHHHHHH-------HHc---C-CEEEEEECccHH-----HHHHHHHHHHHhcCCcceEEEeCCCCCCCCH
Confidence 45677887776554443 221 2 899999987642 2477899999999998875543221
Q ss_pred ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 95 GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 95 ~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
....++.+.+.+...++.|.||++|| |.+..+.-.+.
T Consensus 87 ~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~D~ak~~A 123 (368)
T 3qbe_A 87 PVVGFIWEVLGRIGIGRKDALVSLGG-GAATDVAGFAA 123 (368)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHHHHHHH
Confidence 23444544444333456799999999 78888775554
No 12
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=91.54 E-value=0.72 Score=46.74 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..++++|+.++... ....++|...|+.+|+++.+++-.. .....++.+.+.+...++.|.||++|| |.+
T Consensus 61 ~~~rvlIVtd~~v~----~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gsv 135 (390)
T 3okf_A 61 AKQKVVIVTNHTVA----PLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GVI 135 (390)
T ss_dssp TTCEEEEEEETTTH----HHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HHH
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cHH
Confidence 45899999997653 2355789999999999887654322 223445555554333345589999998 888
Q ss_pred HHHHHhhh
Q 037501 125 NEILNGFL 132 (438)
Q Consensus 125 ~EVvNGL~ 132 (438)
..+.-.+.
T Consensus 136 ~D~ak~~A 143 (390)
T 3okf_A 136 GDLVGFAA 143 (390)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHH
Confidence 88875553
No 13
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=91.43 E-value=0.31 Score=49.32 Aligned_cols=94 Identities=12% Similarity=0.043 Sum_probs=52.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-C--ChHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-A--GQAF 98 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~--~ha~ 98 (438)
..+.|.....+.+..++ ... . +|++||..|..- ....++|...|+. ++++.+...+. + ....
T Consensus 32 ~~i~~G~g~l~~l~~~l-------~~~--g-~r~liVtd~~~~----~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~ 96 (387)
T 3uhj_A 32 NKYIQRAGEIDKLAAYL-------APL--G-KRALVLIDRVLF----DALSERIGKSCGD-SLDIRFERFGGECCTSEIE 96 (387)
T ss_dssp SEEEECTTTTTTTHHHH-------GGG--C-SEEEEEECTTTH----HHHHHHC-------CCEEEEEECCSSCSHHHHH
T ss_pred CeEEEcCCHHHHHHHHH-------HHc--C-CEEEEEECchHH----HHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHH
Confidence 46778876665444432 221 2 789999887653 2356789999998 98873222221 1 1222
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++++.+. ..+.|.||++|| |++..+.-.+...
T Consensus 97 ~~~~~~~---~~~~d~IIavGG-Gs~~D~AK~iA~~ 128 (387)
T 3uhj_A 97 RVRKVAI---EHGSDILVGVGG-GKTADTAKIVAID 128 (387)
T ss_dssp HHHHHHH---HHTCSEEEEESS-HHHHHHHHHHHHH
T ss_pred HHHHHHh---hcCCCEEEEeCC-cHHHHHHHHHHHh
Confidence 3333332 246899999999 8888888776543
No 14
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=89.66 E-value=0.99 Score=45.05 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC----CCh
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR----AGQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~----~~h 96 (438)
|..+.|.....+.....++.+ ..+|++|+..|. . ....++|...|+.+++ .++.-.. ...
T Consensus 14 p~~i~~G~g~~~~l~~~l~~~---------g~~r~liVtd~~----~-~~~~~~v~~~L~~~~~--~~f~~v~~~p~~~~ 77 (358)
T 3jzd_A 14 AARVVFGAGSSSQVAAEVERL---------GAKRALVLCTPN----Q-QAEAERIADLLGPLSA--GVYAGAVMHVPIES 77 (358)
T ss_dssp CEEEEESTTGGGGHHHHHHHT---------TCSCEEEECCGG----G-HHHHHHHHHHHGGGEE--EEECCCCTTCBHHH
T ss_pred CceEEECCCHHHHHHHHHHHh---------CCCeEEEEeCCc----H-HHHHHHHHHHhccCCE--EEecCCcCCCCHHH
Confidence 356888887766555443321 247888888763 2 2456788899987643 3332111 122
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
..+.++.+.+ .+.|.||++|| |++..+.-.+...
T Consensus 78 v~~~~~~~~~---~~~D~IIavGG-GsviD~aK~iA~~ 111 (358)
T 3jzd_A 78 ARDATARARE---AGADCAVAVGG-GSTTGLGKAIALE 111 (358)
T ss_dssp HHHHHHHHHH---HTCSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---cCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 3334443322 47899999999 8888888776543
No 15
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=89.55 E-value=0.54 Score=46.87 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=57.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-C--ChHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-A--GQAF 98 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~--~ha~ 98 (438)
..+.|.....+.+..+ +... . ++++|+..+..-+ ...++|...|+.+++++.+.+-.. + ....
T Consensus 11 ~~i~~G~g~~~~l~~~-------l~~~--g-~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~ 76 (370)
T 1jq5_A 11 AKYVQGKNVITKIANY-------LEGI--G-NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVE 76 (370)
T ss_dssp SEEEEETTGGGGHHHH-------HTTT--C-SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHH
T ss_pred CeEEECcCHHHHHHHH-------HHHc--C-CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHH
Confidence 4577877655444333 2221 2 7899999765432 356789999999998874322111 1 1223
Q ss_pred HHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 99 DVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 99 ~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
++++.+. ..+.|.||++|| |++..+.-.+..
T Consensus 77 ~~~~~~~---~~~~d~IIavGG-Gsv~D~aK~iA~ 107 (370)
T 1jq5_A 77 RIANIAR---KAEAAIVIGVGG-GKTLDTAKAVAD 107 (370)
T ss_dssp HHHHHHH---HTTCSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEeCC-hHHHHHHHHHHH
Confidence 3333332 246899999998 788887766543
No 16
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=89.42 E-value=0.81 Score=45.27 Aligned_cols=97 Identities=10% Similarity=0.136 Sum_probs=59.8
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eCCCChHHH
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQRAGQAFD 99 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~~~~ha~~ 99 (438)
|..+.|.....+....+++. . ..+|++|+..+..-+ ...++|...|+.+|+++.++. ...+ .. +
T Consensus 12 p~~i~~G~g~~~~l~~~l~~-------~--g~~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~~-~~-~ 76 (354)
T 3ce9_A 12 PLILEVGNNKIYNIGQIIKK-------G--NFKRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVETVKNI-DF-D 76 (354)
T ss_dssp CSEEEEESSCGGGHHHHHGG-------G--TCSEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEEECCC-BH-H
T ss_pred CcEEEECCCHHHHHHHHHHh-------c--CCCeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEecCCCC-CH-H
Confidence 34577887666554443221 1 236899999865432 345789999999999887665 3322 22 2
Q ss_pred HHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 100 VMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 100 ~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.+.++......+.|.||++|| |++..+.-.+..
T Consensus 77 ~v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~vA~ 109 (354)
T 3ce9_A 77 EIGTNAFKIPAEVDALIGIGG-GKAIDAVKYMAF 109 (354)
T ss_dssp HHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCEEEEECC-hHHHHHHHHHHh
Confidence 333331111257899999998 788887766543
No 17
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=88.66 E-value=0.57 Score=47.33 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=46.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhc------ceeEEEEEe-C-----CCChHHHHHHHhhhhh--cCCCcEEEE
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRA------KVNTKVIVT-Q-----RAGQAFDVMASTKNKE--LSSYDGVLA 117 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~a------gi~~~v~~T-~-----~~~ha~~~~~~~~~~~--~~~~d~IV~ 117 (438)
.++++|+.++.. .....++|...|+.+ ++++.+++- . ......++.+.+.+.. .++.|.||+
T Consensus 36 ~~k~liVtd~~v----~~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iIa 111 (393)
T 1sg6_A 36 STTYVLVTDTNI----GSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIA 111 (393)
T ss_dssp CSEEEEEEEHHH----HHHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEEE
T ss_pred CCeEEEEECCcH----HHHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEEE
Confidence 478999998533 222456788889877 777653322 2 1123345555554322 233499999
Q ss_pred EcCCchHHHHHHhhh
Q 037501 118 VGGDGFFNEILNGFL 132 (438)
Q Consensus 118 vGGDGTv~EVvNGL~ 132 (438)
+|| |.+..+.-.+.
T Consensus 112 lGG-Gsv~D~ak~~A 125 (393)
T 1sg6_A 112 LGG-GVIGDLTGFVA 125 (393)
T ss_dssp EES-HHHHHHHHHHH
T ss_pred ECC-cHHHHHHHHHH
Confidence 998 77878775544
No 18
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=87.94 E-value=1.3 Score=44.17 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=56.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCC--ChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRA--GQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~--~ha 97 (438)
..+.|.....+....+++.+ ..+|++|+..+. . ....++|...|+..++ .++.- ..+ ...
T Consensus 13 ~~i~~G~g~~~~l~~~l~~~---------g~~r~liVtd~~----~-~~~~~~v~~~L~~~~~--~v~~~v~~~p~~~~v 76 (353)
T 3hl0_A 13 ARIVFSAGSSADVAEEIRRL---------GLSRALVLSTPQ----Q-KGDAEALASRLGRLAA--GVFSEAAMHTPVEVT 76 (353)
T ss_dssp CCEEECTTGGGGHHHHHHHT---------TCCCEEEECCGG----G-HHHHHHHHHHHGGGEE--EEECCCCTTCBHHHH
T ss_pred ceEEECcCHHHHHHHHHHHh---------CCCEEEEEecCc----h-hhHHHHHHHHHhhCCc--EEecCcCCCCcHHHH
Confidence 44788887766555543321 246788888754 2 2456789999987653 33311 111 233
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+.++.+. ..+.|.||++|| |++..+.-.+...
T Consensus 77 ~~~~~~~~---~~~~D~IIavGG-Gs~iD~aK~iA~~ 109 (353)
T 3hl0_A 77 KTAVEAYR---AAGADCVVSLGG-GSTTGLGKAIALR 109 (353)
T ss_dssp HHHHHHHH---HTTCSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHh---ccCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 34444433 257899999999 8888888776543
No 19
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=85.53 E-value=1.3 Score=45.60 Aligned_cols=75 Identities=8% Similarity=0.067 Sum_probs=46.2
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
++++|+..+..-+ ...++|...|+.+|+++.+.+-.. ....+.+.++.+...++.|.||++|| |++..+.-.+.
T Consensus 92 ~rvlIVtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~g-e~~~~~v~~~~~~~~~~~D~IIAvGG-GSviD~AK~iA 165 (450)
T 1ta9_A 92 KSAVVLADQNVWN----ICANKIVDSLSQNGMTVTKLVFGG-EASLVELDKLRKQCPDDTQVIIGVGG-GKTMDSAKYIA 165 (450)
T ss_dssp SEEEEEEEHHHHH----HTHHHHHHHHHHTTCEEEEEEECS-CCCHHHHHHHHTTSCTTCCEEEEEES-HHHHHHHHHHH
T ss_pred CEEEEEECccHHH----HHHHHHHHHHHHCCCeEEEEeeCC-CCCHHHHHHHHHHHhhCCCEEEEeCC-cHHHHHHHHHH
Confidence 4888888764432 356789999999998874222111 11122333333211127899999998 78888876665
Q ss_pred h
Q 037501 133 S 133 (438)
Q Consensus 133 ~ 133 (438)
.
T Consensus 166 ~ 166 (450)
T 1ta9_A 166 H 166 (450)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=82.68 E-value=5.6 Score=39.55 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=57.4
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC------C
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR------A 94 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~------~ 94 (438)
+..+.|.....+.... .+ . ....++++|+.++...+ ...++|...|+.+ +++.+++-.. .
T Consensus 12 ~~~i~~G~g~l~~l~~-------~l-~-~~~~~k~liVtd~~v~~----~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~ 77 (368)
T 2gru_A 12 CFNFAFGEHVLESVES-------YI-P-RDEFDQYIMISDSGVPD----SIVHYAAEYFGKL-APVHILRFQGGEEYKTL 77 (368)
T ss_dssp EEEEEEETTSGGGGGG-------TS-C-TTSCSEEEEEEETTSCH----HHHHHHHHHHTTT-SCEEEEEECCSGGGCSH
T ss_pred CceEEEeCCHHHHHHH-------HH-h-ccCCCEEEEEECCcHHH----HHHHHHHHHHHhc-cceeEEEeCCCCCCCCH
Confidence 3556777665443322 22 1 11357999999976542 2457899999877 6665433221 1
Q ss_pred ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 95 GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 95 ~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
....++.+.+.+...++.|.||++|| |.+..+.-...
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv~D~ak~~A 114 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGG-GLTGNVAGVAA 114 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECC-hHHHHHHHHHH
Confidence 12333444443333455799999998 88888775554
No 21
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=81.66 E-value=4.8 Score=35.68 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=45.1
Q ss_pred hhccCCCcEEEEEEcCC--------------CCCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC
Q 037501 46 NMEVGRPKNLLIFIHPM--------------SGKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS 110 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~--------------sG~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~ 110 (438)
|.-...|+.+.+|||=. =..+.+... .+.+..+|+..|++++++.=-...+..+.++++...+..
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~ 95 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 95 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhcc
Confidence 43345677888888742 113333333 456999999999999887655566666666666554445
Q ss_pred CCcEEE
Q 037501 111 SYDGVL 116 (438)
Q Consensus 111 ~~d~IV 116 (438)
.+|.+|
T Consensus 96 ~~dc~v 101 (164)
T 1qtn_A 96 NMDCFI 101 (164)
T ss_dssp TCSCEE
T ss_pred CCCEEE
Confidence 677433
No 22
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=81.16 E-value=9.4 Score=33.87 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHHhhhccCCCcEEEEEEcCCC-------CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCC
Q 037501 42 NAFLNMEVGRPKNLLIFIHPMS-------GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSY 112 (438)
Q Consensus 42 ~~~~~~~~~rpk~llvivNP~s-------G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~ 112 (438)
.+..|.-...|+.+.+|||=.. ..+.+... .+.++.+|+..|++++++.=-...+..+.++++.+ .+...+
T Consensus 22 ~~~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~ 101 (167)
T 1pyo_A 22 FQLAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVT 101 (167)
T ss_dssp GGGBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTS
T ss_pred ccccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCC
Confidence 3455655567788888887542 12333333 35699999999999887765556666666666655 344567
Q ss_pred cEE
Q 037501 113 DGV 115 (438)
Q Consensus 113 d~I 115 (438)
|.+
T Consensus 102 dc~ 104 (167)
T 1pyo_A 102 DSC 104 (167)
T ss_dssp SEE
T ss_pred CEE
Confidence 743
No 23
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=80.93 E-value=3.9 Score=36.71 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=44.3
Q ss_pred hhccCCCcEEEEEEcCC--C-----CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEE
Q 037501 46 NMEVGRPKNLLIFIHPM--S-----GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGV 115 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~--s-----G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~I 115 (438)
|.-...|+.+.+|||=. . ..+.+... .+.+..+|+..|++++++.=-...+..+.++++.+.+...+|.+
T Consensus 37 Y~m~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~~dh~~~dc~ 114 (173)
T 2ql9_A 37 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACF 114 (173)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHTSCCTTEEEE
T ss_pred cccCCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCeE
Confidence 43345667788888743 1 12334333 45699999999999888765556666666666665444567743
No 24
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=80.58 E-value=3.4 Score=38.94 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=43.7
Q ss_pred CcEEEEEEcCC------CCCCChhhhHHH--HHHHHHhcceeEEEEEeCCCC----h---------------------HH
Q 037501 52 PKNLLIFIHPM------SGKGSGRRTWET--VAPIFVRAKVNTKVIVTQRAG----Q---------------------AF 98 (438)
Q Consensus 52 pk~llvivNP~------sG~g~~~~~~~~--v~~~l~~agi~~~v~~T~~~~----h---------------------a~ 98 (438)
+||++|++-.. .|+..+....|- ...+|+++|+++++.-.+... | ..
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 88 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM 88 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence 47888887653 344345555564 446788999999887543211 0 11
Q ss_pred -HHHH---HhhhhhcCCCcEEEEEcCCchH
Q 037501 99 -DVMA---STKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 99 -~~~~---~~~~~~~~~~d~IV~vGGDGTv 124 (438)
.+.. .+.+.+.+.||.|++.||-|+.
T Consensus 89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~ 118 (247)
T 3n7t_A 89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGAL 118 (247)
T ss_dssp HHHHHCCEEGGGSCGGGCSEEEECCSTTHH
T ss_pred HHHhccCCCHHHCChhhCCEEEEeCCCchh
Confidence 1111 1222234579999999999984
No 25
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=80.29 E-value=6.2 Score=39.23 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC-C--CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ-R--AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~-~--~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
+|++|+..+.+-+.. ..+++|...|+.+|+++.++. .+ . .....++++.+. ..+.|.||++|| |++..+.
T Consensus 41 ~~~liVtd~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~---~~~~d~IIavGG-Gsv~D~A 114 (371)
T 1o2d_A 41 KRALVVTGKSSSKKN--GSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYR---NDSFDFVVGLGG-GSPMDFA 114 (371)
T ss_dssp SEEEEEEESSGGGTS--SHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHT---TSCCSEEEEEES-HHHHHHH
T ss_pred CEEEEEECchHHhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHH---hcCCCEEEEeCC-hHHHHHH
Confidence 799999987543322 256789999999998876553 22 1 223344444443 247899999998 6777766
Q ss_pred Hhhhh
Q 037501 129 NGFLS 133 (438)
Q Consensus 129 NGL~~ 133 (438)
-.+..
T Consensus 115 K~iA~ 119 (371)
T 1o2d_A 115 KAVAV 119 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 26
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=78.79 E-value=6.1 Score=34.28 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=46.3
Q ss_pred cCCCcEEEEEEcCC--C-----CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE-EEEEc
Q 037501 49 VGRPKNLLIFIHPM--S-----GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG-VLAVG 119 (438)
Q Consensus 49 ~~rpk~llvivNP~--s-----G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~-IV~vG 119 (438)
..+|+.+.+|||=. . ..+.+... .+.++.+|+..|++++++.=-...+..+.++++++.+...+|. |+++=
T Consensus 12 ~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~il 91 (146)
T 2dko_A 12 DYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLL 91 (146)
T ss_dssp CSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTEEEEEEEEE
T ss_pred CCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHHhhcCCCCeEEEEec
Confidence 34667788888753 1 22333333 4569999999999988876656666667777766544456674 44443
Q ss_pred CCc
Q 037501 120 GDG 122 (438)
Q Consensus 120 GDG 122 (438)
+-|
T Consensus 92 SHG 94 (146)
T 2dko_A 92 SHG 94 (146)
T ss_dssp SCE
T ss_pred cCC
Confidence 333
No 27
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=77.52 E-value=2.2 Score=42.67 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=52.0
Q ss_pred EEEEeecCCCh-HHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-C-C--CC
Q 037501 21 LAVYTFGHKDL-PTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-Q-R--AG 95 (438)
Q Consensus 21 ~~~~~f~~~~~-~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~-~--~~ 95 (438)
|..+.|..... +.....++.+ ..+|++|+..+. . ..++++|...|+ .+.++.- + . ..
T Consensus 14 P~~i~~G~g~~~~~l~~~l~~~---------g~~rvliVtd~~----~-~~~~~~v~~~L~----~~~~f~~v~~~p~~~ 75 (364)
T 3iv7_A 14 PQKVMFGYGKSSAFLKQEVERR---------GSAKVMVIAGER----E-MSIAHKVASEIE----VAIWHDEVVMHVPIE 75 (364)
T ss_dssp CEEEEEETTCHHHHHHHHHHHH---------TCSSEEEECCGG----G-HHHHHHHTTTSC----CSEEECCCCTTCBHH
T ss_pred CceEEEeCChHHHHHHHHHHHc---------CCCEEEEEECCC----H-HHHHHHHHHHcC----CCEEEcceecCCCHH
Confidence 45688888765 3334333321 236788887764 2 234566766665 2222211 1 1 12
Q ss_pred hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 96 QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 96 ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
...+.++.+. ..+.|.||++|| |++..+.-.+...
T Consensus 76 ~v~~~~~~~~---~~~~D~IIavGG-Gs~iD~aK~iA~~ 110 (364)
T 3iv7_A 76 VAERARAVAT---DNEIDLLVCVGG-GSTIGLAKAIAMT 110 (364)
T ss_dssp HHHHHHHHHH---HTTCCEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hcCCCEEEEeCC-cHHHHHHHHHHhc
Confidence 2333443332 257899999999 8888888776543
No 28
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=76.91 E-value=3.1 Score=41.93 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=58.6
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--C--CCh
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--R--AGQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~--~~h 96 (438)
|..+.|.....+.....++.+ ..+|++|+..+.+-+. ...+++|...|+.+|+++.++.-- . ...
T Consensus 21 p~~i~~G~g~l~~l~~~l~~~---------g~~r~liVtd~~~~~~--~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~ 89 (407)
T 1vlj_A 21 PTKIVFGRGTIPKIGEEIKNA---------GIRKVLFLYGGGSIKK--NGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSK 89 (407)
T ss_dssp CCEEEESTTCGGGHHHHHHHT---------TCCEEEEEECSSHHHH--SSHHHHHHHHHHHTTCEEEEECCCCSSCBHHH
T ss_pred CCeEEECcCHHHHHHHHHHHc---------CCCeEEEEECchHHhh--ccHHHHHHHHHHHcCCeEEEecCccCCCCHHH
Confidence 356788877665554443321 2378999886332111 124678999999999988654211 1 123
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
..+.++.+. ..+.|.||++|| |++..+.-.+.
T Consensus 90 v~~~~~~~~---~~~~D~IIavGG-GsviD~AK~iA 121 (407)
T 1vlj_A 90 VHEAVEVAK---KEKVEAVLGVGG-GSVVDSAKAVA 121 (407)
T ss_dssp HHHHHHHHH---HTTCSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCCCEEEEeCC-hhHHHHHHHHH
Confidence 334444433 257899999998 77777766543
No 29
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=75.97 E-value=8.5 Score=38.32 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=58.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCC--CChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQR--AGQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~--~~ha 97 (438)
..+.|.....+.+..+++.+ ..+|++|+..+..-+.. ...+++|...|+.+|+++.++. ... ....
T Consensus 12 ~~i~~G~g~~~~l~~~l~~~---------g~~~~livtd~~~~~~~-~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v 81 (387)
T 3bfj_A 12 NVNFFGPNAISVVGERCQLL---------GGKKALLVTDKGLRAIK-DGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNV 81 (387)
T ss_dssp SEEEESTTGGGGHHHHHHHT---------TCSEEEEECCTTTC--C-CSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHH
T ss_pred CeEEECCCHHHHHHHHHHHc---------CCCEEEEEECcchhhcc-chHHHHHHHHHHHcCCeEEEECCccCCCCHHHH
Confidence 45778876665554443321 23789999887554320 0146789999999999875542 111 1123
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
.+.++.+. ..++|.||++|| |++..+.-.+.
T Consensus 82 ~~~~~~~~---~~~~d~IIavGG-Gsv~D~aK~iA 112 (387)
T 3bfj_A 82 RDGLAVFR---REQCDIIVTVGG-GSPHDCGKGIG 112 (387)
T ss_dssp HHHHHHHH---HTTCCEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHH---hcCCCEEEEeCC-cchhhHHHHHH
Confidence 34444433 257899999998 77777665543
No 30
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=73.90 E-value=4.4 Score=37.53 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=41.6
Q ss_pred hhhccCCCcEEEEEE-cCCCC---CCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 45 LNMEVGRPKNLLIFI-HPMSG---KGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 45 ~~~~~~rpk~llviv-NP~sG---~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
|..+...+++++||+ .|.-+ ++....+.+.+...++.+|.+++++.-....+..+..+.+ ...|+||++
T Consensus 18 ~~~~~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l-----~~aD~iv~~ 90 (218)
T 3rpe_A 18 LYFQSNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENY-----LWADTIIYQ 90 (218)
T ss_dssp -C----CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHH-----HHCSEEEEE
T ss_pred cccccccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHH-----HhCCEEEEE
Confidence 344445567777776 77642 2233455667888888899998887765544554444443 457888876
No 31
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=73.88 E-value=10 Score=34.09 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=45.3
Q ss_pred hhccCCCcEEEEEEcCCC-------CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEE
Q 037501 46 NMEVGRPKNLLIFIHPMS-------GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVL 116 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~s-------G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV 116 (438)
|.-..+|+.+.+|||=.. ..+.+... .+.+..+|+..|++++++.=-...+..+.++++...+...+|.+|
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 333456777888876431 23334333 456999999999999887655566666666666554555677544
No 32
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=73.23 E-value=8.4 Score=36.99 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=44.7
Q ss_pred cCCCcEEEEEEcCCC-------CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE-EEEEc
Q 037501 49 VGRPKNLLIFIHPMS-------GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG-VLAVG 119 (438)
Q Consensus 49 ~~rpk~llvivNP~s-------G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~-IV~vG 119 (438)
.++|+++.+|||=.. ..+.+.. -.+.+...|+..|++|++..=-...+..+.++++...+...+|. |+++=
T Consensus 40 ~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~il 119 (277)
T 4ehd_A 40 DYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLL 119 (277)
T ss_dssp CSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEE
T ss_pred CCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEE
Confidence 457788988886221 1222322 24569999999999988776545555566666665444456774 33443
Q ss_pred CCc
Q 037501 120 GDG 122 (438)
Q Consensus 120 GDG 122 (438)
+-|
T Consensus 120 SHG 122 (277)
T 4ehd_A 120 SHG 122 (277)
T ss_dssp SCE
T ss_pred cCC
Confidence 334
No 33
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=73.15 E-value=13 Score=32.18 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=42.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
.++++||+- |..|...++.+.|..-|...|++++++......+..++...+ ..+|.||+..
T Consensus 4 ~~kv~IvY~--S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-----~~~d~ii~Gs 64 (159)
T 3fni_A 4 ETSIGVFYV--SEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELV-----GRCTGLVIGM 64 (159)
T ss_dssp CCEEEEEEC--TTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHH-----HTEEEEEEEC
T ss_pred CCEEEEEEE--CCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHH-----HhCCEEEEEc
Confidence 357888885 445677788889999999999988877555432455555443 4688877754
No 34
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=72.67 E-value=8.8 Score=36.66 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=46.5
Q ss_pred hhccCCCcEEEEEEcCC--C----CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE-EEE
Q 037501 46 NMEVGRPKNLLIFIHPM--S----GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG-VLA 117 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~--s----G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~-IV~ 117 (438)
|.-..+++++.+|||=. . ....+.. -.+.+...|+..|++++++.=-...+..+.++++.+.+...+|. |++
T Consensus 25 Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~ 104 (272)
T 1m72_A 25 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVA 104 (272)
T ss_dssp CCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 33335667888888732 1 1222222 24569999999999988776555555566666665444456674 445
Q ss_pred EcCCch
Q 037501 118 VGGDGF 123 (438)
Q Consensus 118 vGGDGT 123 (438)
+=|-|.
T Consensus 105 ~lsHG~ 110 (272)
T 1m72_A 105 VLTHGE 110 (272)
T ss_dssp EESCEE
T ss_pred EcCCCC
Confidence 544553
No 35
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=71.81 E-value=4.9 Score=40.23 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=56.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC-C--CChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ-R--AGQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~-~--~~ha 97 (438)
..+.|.....+.+. +.+.. ...+|++|+..+.- .....+++|...|+.+|+++.++. .+ . ....
T Consensus 10 ~~i~~G~g~~~~l~-------~~~~~--~g~~~~liVtd~~~---~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v 77 (383)
T 3ox4_A 10 FVNEMGEGSLEKAI-------KDLNG--SGFKNALIVSDAFM---NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAV 77 (383)
T ss_dssp SEEEESTTHHHHHH-------HTTTT--SCCCEEEEEEEHHH---HHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHH
T ss_pred CeEEECCCHHHHHH-------HHHHH--cCCCEEEEEECCch---hhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHH
Confidence 34677766554333 33322 13478999987531 111246789999999999886653 21 1 1233
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.+.++.+.+ .+.|.||++|| |++..+.-.+
T Consensus 78 ~~~~~~~~~---~~~D~IIavGG-Gsv~D~aK~i 107 (383)
T 3ox4_A 78 LEGLKILKD---NNSDFVISLGG-GSPHDCAKAI 107 (383)
T ss_dssp HHHHHHHHH---HTCSEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHh---cCcCEEEEeCC-cHHHHHHHHH
Confidence 334443322 46899999999 8887776654
No 36
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=71.10 E-value=6.9 Score=36.19 Aligned_cols=68 Identities=13% Similarity=0.236 Sum_probs=37.1
Q ss_pred CCcEEEEEEcCCCC-CCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSG-KGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG-~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
..++++|| |.+. .+......+.+...|++.|+++ ..+....+..+ . +...|+|++-||+ ....+.
T Consensus 30 ~~~~i~iI--~~a~~~~~~~~~~~~~~~al~~lG~~~--~~v~~~~d~~~---~-----l~~ad~I~lpGG~--~~~~~~ 95 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTWDEYTDKTAEVLAPLGVNV--TGIHRVADPLA---A-----IEKAEIIIVGGGN--TFQLLK 95 (229)
T ss_dssp TCCEEEEE--CTTCCSSCHHHHHHHHHHHHGGGTCEE--EETTSSSCHHH---H-----HHHCSEEEECCSC--HHHHHH
T ss_pred CCCeEEEE--ECCCCCCCHHHHHHHHHHHHHHCCCEE--EEEeccccHHH---H-----HhcCCEEEECCCc--HHHHHH
Confidence 34566666 6654 2333344467889999999754 44433333222 2 2346877776655 444444
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
.|.
T Consensus 96 ~l~ 98 (229)
T 1fy2_A 96 ESR 98 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 37
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=70.82 E-value=4.6 Score=37.91 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=26.4
Q ss_pred CcEEEEEEcCC------CCCCChhhhHHH--HHHHHHhcceeEEEEEeC
Q 037501 52 PKNLLIFIHPM------SGKGSGRRTWET--VAPIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 52 pk~llvivNP~------sG~g~~~~~~~~--v~~~l~~agi~~~v~~T~ 92 (438)
+||++|++--. .|+..+....|- ....|+++|+++++.-.+
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~ 51 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSET 51 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47788887532 234345445553 456789999999877543
No 38
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=70.68 E-value=1.7 Score=43.37 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=54.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHH
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDV 100 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~ 100 (438)
|..+.|.....+.+..+++ .. . +|++|+..+..-+ .-..++|...|+.+++.+.++.-+.. .+.
T Consensus 20 p~~i~~G~g~l~~l~~~l~-------~~--g-~~~liVtd~~~~~---~~~~~~v~~~L~~~g~~~~~~~ge~~---~~~ 83 (376)
T 1kq3_A 20 PGRYVQGAGAINILEEELS-------RF--G-ERAFVVIDDFVDK---NVLGENFFSSFTKVRVNKQIFGGECS---DEE 83 (376)
T ss_dssp CSEEEEETTGGGGHHHHHH-------TT--C-SEEEEEECHHHHH---HTTCTTGGGGCSSSEEEEEECCSSCB---HHH
T ss_pred CceEEECCCHHHHHHHHHH-------Hc--C-CeEEEEECccHHh---hccHHHHHHHHHHcCCeEEEeCCCCC---HHH
Confidence 4567888776654444322 11 2 7899998753211 11145677778777765543322211 222
Q ss_pred HHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 101 MASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 101 ~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
+.++.+...++.|.||++|| |++..+.-.+..
T Consensus 84 v~~~~~~~~~~~d~IIavGG-Gsv~D~aK~iA~ 115 (376)
T 1kq3_A 84 IERLSGLVEEETDVVVGIGG-GKTLDTAKAVAY 115 (376)
T ss_dssp HHHHHTTCCTTCCEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 23332211127899999998 788888766654
No 39
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=70.35 E-value=9.3 Score=37.34 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCcEEEEEEcCC--C----CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc-EEEEEcCC
Q 037501 50 GRPKNLLIFIHPM--S----GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD-GVLAVGGD 121 (438)
Q Consensus 50 ~rpk~llvivNP~--s----G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d-~IV~vGGD 121 (438)
.+++++.+|||=. . ..+.+.. -.+.+...|+..|++++++.=-...+..+.++++.+.+...+| .||++=|-
T Consensus 57 ~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSH 136 (310)
T 2nn3_C 57 HKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTA 136 (310)
T ss_dssp SSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEE
T ss_pred CCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeCC
Confidence 4667788887732 1 1222222 2456999999999998877655555556666666543334566 34454444
Q ss_pred c
Q 037501 122 G 122 (438)
Q Consensus 122 G 122 (438)
|
T Consensus 137 G 137 (310)
T 2nn3_C 137 G 137 (310)
T ss_dssp E
T ss_pred C
Confidence 4
No 40
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=69.31 E-value=27 Score=32.38 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD 113 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d 113 (438)
....++.|.+.+ +.-|++.+|.+|... .+....+..+..+++.|+++.........+..+.++++. ...|
T Consensus 119 ~~~~~~~l~~~~----pg~~~I~~i~~~~~~--~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~----~~~d 188 (295)
T 3lft_A 119 AQQQVELIKALT----PNVKTIGALYSSSED--NSKTQVEEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT----SKVD 188 (295)
T ss_dssp HHHHHHHHHHHC----TTCCEEEEEEETTCH--HHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT----TTCS
T ss_pred HHHHHHHHHHhC----CCCcEEEEEeCCCCc--chHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH----hcCC
Confidence 445555555543 245899999998431 233445567888899999876554444556666666552 4688
Q ss_pred EEEEEcCCchHHHHHHhhhhc
Q 037501 114 GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 114 ~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+|++ ..|.+.-.++..+...
T Consensus 189 ai~~-~~D~~a~g~~~~l~~~ 208 (295)
T 3lft_A 189 AIWV-PIDNTIASGFPTVVSS 208 (295)
T ss_dssp EEEE-CSCHHHHHTHHHHHHH
T ss_pred EEEE-CCchhHHHHHHHHHHH
Confidence 8776 5788776666666543
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=68.87 E-value=16 Score=33.45 Aligned_cols=72 Identities=13% Similarity=0.169 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHH--HHHHHHhcceeEEEEEeCCC---------------ChHHHHHH---------Hh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWET--VAPIFVRAKVNTKVIVTQRA---------------GQAFDVMA---------ST 104 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~--v~~~l~~agi~~~v~~T~~~---------------~ha~~~~~---------~~ 104 (438)
.+|+++|++-..+ .-.+....+- ...+|.++|++++++-.+.. .+...+.. .+
T Consensus 5 ~m~kv~ill~~~~-~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l 83 (232)
T 1vhq_A 5 TMKKIGVILSGCG-VYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPL 83 (232)
T ss_dssp -CCEEEEECCSBS-TTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEG
T ss_pred cCCeEEEEEccCC-CCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCH
Confidence 3577888775111 1123344553 45778999998887754321 11111111 11
Q ss_pred hhhhcCCCcEEEEEcCCch
Q 037501 105 KNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGT 123 (438)
.+.+.+.||.|++.||-|.
T Consensus 84 ~~~~~~~~D~livpGG~~~ 102 (232)
T 1vhq_A 84 AQADAAELDALIVPGGFGA 102 (232)
T ss_dssp GGCCGGGCSEEEECCSTHH
T ss_pred HHcCcccCCEEEECCCcch
Confidence 1112357999999999886
No 42
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=68.86 E-value=19 Score=34.31 Aligned_cols=68 Identities=10% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCcEEEEEEc--CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 51 RPKNLLIFIH--PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 51 rpk~llvivN--P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
.+.++.|++. +...+.-...+++-++..+++.|+++.+..+....+..+.++.+.+ .++|+||++|..
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~---~~~dgIi~~~~~ 72 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD---ENMGLVVACGSF 72 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHH---TTCSEEEEESTT
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHH---cCCCEEEECChh
Confidence 3467777775 4332222334455678888888988877777554444455555542 679999999854
No 43
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=68.40 E-value=6.6 Score=32.67 Aligned_cols=25 Identities=8% Similarity=0.323 Sum_probs=22.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.|.|...+.++.++|++.|+....
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~~~~~ 118 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLKILTS 118 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4799999999999999999998763
No 44
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=68.04 E-value=14 Score=35.42 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=44.2
Q ss_pred cCCCcEEEEEEcCCC-------CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE-EEEEc
Q 037501 49 VGRPKNLLIFIHPMS-------GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG-VLAVG 119 (438)
Q Consensus 49 ~~rpk~llvivNP~s-------G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~-IV~vG 119 (438)
..+|+++.+|||=.. ..+.+... .+.+..+|+..|++|++..=-...+..+.++++...+...+|. ||++=
T Consensus 17 ~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~il 96 (278)
T 3od5_A 17 DHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFL 96 (278)
T ss_dssp CSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEEEEE
T ss_pred CCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEE
Confidence 456778877776432 22233322 4569999999999988775445555555566655444456773 44443
Q ss_pred CCc
Q 037501 120 GDG 122 (438)
Q Consensus 120 GDG 122 (438)
+-|
T Consensus 97 SHG 99 (278)
T 3od5_A 97 SHG 99 (278)
T ss_dssp SCE
T ss_pred CCC
Confidence 334
No 45
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=67.79 E-value=7.2 Score=30.96 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=23.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|+..+..
T Consensus 88 ~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 88 DSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 45889999999999999999999864
No 46
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=67.44 E-value=6.2 Score=39.27 Aligned_cols=94 Identities=16% Similarity=0.075 Sum_probs=57.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CC--CChH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QR--AGQA 97 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~--~~ha 97 (438)
..+.|.....+.....++.+ ..+|++|+..+..- ....+++|...|+.+++++.++.- .. ....
T Consensus 10 ~~i~~G~g~~~~l~~~l~~~---------g~~~~livtd~~~~---~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v 77 (386)
T 1rrm_A 10 ETAWFGRGAVGALTDEVKRR---------GYQKALIVTDKTLV---QCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVV 77 (386)
T ss_dssp SEEEESTTGGGGHHHHHHHH---------TCCEEEEECBHHHH---HTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHH
T ss_pred ceEEECcCHHHHHHHHHHHc---------CCCEEEEEECcchh---hchHHHHHHHHHHHcCCeEEEECCccCCCCHHHH
Confidence 45778876665554443331 24788998865431 112567899999999988765431 11 1233
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.++++.+.+ .+.|.||++|| |++..+.-.+
T Consensus 78 ~~~~~~~~~---~~~d~IIavGG-Gsv~D~aK~i 107 (386)
T 1rrm_A 78 KEGLGVFQN---SGADYLIAIGG-GSPQDTCKAI 107 (386)
T ss_dssp HHHHHHHHH---HTCSEEEEEES-HHHHHHHHHH
T ss_pred HHHHHHHHh---cCcCEEEEeCC-hHHHHHHHHH
Confidence 344444332 46799999998 7777766554
No 47
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=67.43 E-value=20 Score=34.05 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=42.6
Q ss_pred hhccCCCcEEEEEEcCCC-------CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE
Q 037501 46 NMEVGRPKNLLIFIHPMS-------GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~s-------G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~ 114 (438)
|.-.+.|+.+.+|||=.. ..+.+.. =.+.+..+|+..|++|+++.=-...+..+.++++.+.+...+|.
T Consensus 14 Y~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~ 90 (277)
T 1nw9_B 14 YILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDC 90 (277)
T ss_dssp CCCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSE
T ss_pred eeCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCe
Confidence 443457888888887442 1222322 23469999999999988775445555566666665434355674
No 48
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=65.89 E-value=7.7 Score=37.99 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCCCC-ChhhhHHHHHHHHHhcceeEEEEEeCC------CChH----HHHHHHhhhhhcCCCcEEEEE-
Q 037501 51 RPKNLLIFIHPMSGKG-SGRRTWETVAPIFVRAKVNTKVIVTQR------AGQA----FDVMASTKNKELSSYDGVLAV- 118 (438)
Q Consensus 51 rpk~llvivNP~sG~g-~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha----~~~~~~~~~~~~~~~d~IV~v- 118 (438)
++-.-.-||-|.++-+ .....++.....|+..|+++.+-.+-. +++. .|+.+.+. .+..++|+|+
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~---Dp~i~aI~~~r 86 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFN---DSSVKAILTVI 86 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHH---CTTEEEEEESC
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhh---CCCCCEEEEcC
Confidence 3445678899998743 234456777788999998776543221 2333 34444332 2567888876
Q ss_pred cCCchH
Q 037501 119 GGDGFF 124 (438)
Q Consensus 119 GGDGTv 124 (438)
||+|+.
T Consensus 87 GG~g~~ 92 (327)
T 4h1h_A 87 GGFNSN 92 (327)
T ss_dssp CCSCGG
T ss_pred CchhHH
Confidence 999974
No 49
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=65.24 E-value=4 Score=32.63 Aligned_cols=26 Identities=35% Similarity=0.842 Sum_probs=23.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|++.+..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999998864
No 50
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=64.65 E-value=4.5 Score=37.62 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCC------CCCChhhhHHH--HHHHHHhcceeEEEEEeC
Q 037501 52 PKNLLIFIHPMS------GKGSGRRTWET--VAPIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 52 pk~llvivNP~s------G~g~~~~~~~~--v~~~l~~agi~~~v~~T~ 92 (438)
+||++|++-..+ |+..+....|- ...+|.++|+++++.-.+
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~ 51 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSET 51 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCC
Confidence 468888885322 33344445553 456799999988876543
No 51
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=64.52 E-value=21 Score=27.99 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHh
Q 037501 40 RVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 40 ~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
.|+..+..-...-|.+.||+|-.| ..-.+..+..-++.|+.|++..++.+.+...-+++.
T Consensus 39 dirdiiksmkdngkplvvfvngas-----qndvnefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGAS-----QNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCC-----HHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcc-----cccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 344444433345588999999333 223344555566779999999888877665545443
No 52
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=64.15 E-value=8.9 Score=31.11 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|++.+..
T Consensus 86 ~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 86 IERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999998864
No 53
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=64.02 E-value=19 Score=34.22 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=41.9
Q ss_pred hhccCCCcEEEEEEcCC--------------CCCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC
Q 037501 46 NMEVGRPKNLLIFIHPM--------------SGKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS 110 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~--------------sG~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~ 110 (438)
|.-..+|+.+.+|||=. -..+.+.. -.+.+..+|+..|+++++..=-...+..+.++++...+..
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 33345778888888741 11222322 2456999999999998877544555555556665543445
Q ss_pred CCcE
Q 037501 111 SYDG 114 (438)
Q Consensus 111 ~~d~ 114 (438)
.+|.
T Consensus 90 ~~d~ 93 (271)
T 3h11_B 90 NMDC 93 (271)
T ss_dssp TCSC
T ss_pred CCCE
Confidence 5674
No 54
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=63.03 E-value=51 Score=29.43 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=53.1
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcE-EEEEcCCchHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDG-VLAVGGDGFFNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~-IV~vGGDGTv~EVvN 129 (438)
++.||. |...-..+.++....|+..|+.|++.+..- +....++++++. ..++++ |+++||.|-+--++-
T Consensus 14 ~V~Iim----GS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~---~~g~~ViIa~AG~aahLpgvvA 86 (173)
T 4grd_A 14 LVGVLM----GSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKAR---ERGLRAIIAGAGGAAHLPGMLA 86 (173)
T ss_dssp SEEEEE----SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHT---TTTCSEEEEEEESSCCHHHHHH
T ss_pred eEEEEe----CcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHH---hcCCeEEEEeccccccchhhhe
Confidence 455554 555556677888999999999999887642 334566776653 356664 667899999999999
Q ss_pred hhhhc
Q 037501 130 GFLSS 134 (438)
Q Consensus 130 GL~~~ 134 (438)
++...
T Consensus 87 ~~t~~ 91 (173)
T 4grd_A 87 AKTTV 91 (173)
T ss_dssp HHCCS
T ss_pred ecCCC
Confidence 98654
No 55
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=62.31 E-value=14 Score=30.94 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC-CCcEEEEEc---CC--chHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS-SYDGVLAVG---GD--GFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~-~~d~IV~vG---GD--GTv~E 126 (438)
++++|++--. .|..+++.+.+...|...|++++++...... ..++. .+|.||++. |+ |.+..
T Consensus 2 ~ki~I~y~S~--tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~----------~~~l~~~~d~ii~g~pty~~~~G~~p~ 69 (148)
T 3f6r_A 2 SKVLIVFGSS--TGNTESIAQKLEELIAAGGHEVTLLNAADAS----------AENLADGYDAVLFGCSAWGMEDLEMQD 69 (148)
T ss_dssp CEEEEEEECS--SSHHHHHHHHHHHHHHTTTCEEEEEETTTBC----------CTTTTTTCSEEEEEECEECSSSCEECH
T ss_pred CeEEEEEECC--CchHHHHHHHHHHHHHhCCCeEEEEehhhCC----------HhHhcccCCEEEEEecccCCCCCCCcH
Confidence 5788888543 4567788888999999999888876543321 11345 789877766 56 77766
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
.+..++..
T Consensus 70 ~~~~fl~~ 77 (148)
T 3f6r_A 70 DFLSLFEE 77 (148)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 56566543
No 56
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=62.30 E-value=30 Score=32.21 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD 113 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d 113 (438)
....++.|.+.+ ..-|++.+|.+|... .+....+..+..+++.|+++.........+..+.++++. ...|
T Consensus 126 ~~~~~~~l~~~~----Pg~~~I~~i~~~~~~--~~~~r~~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~----~~~d 195 (302)
T 2qh8_A 126 VEQHVELIKEIL----PNVKSIGVVYNPGEA--NAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA----EKSD 195 (302)
T ss_dssp HHHHHHHHHHHS----TTCCEEEEEECTTCH--HHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG----GGCS
T ss_pred HHHHHHHHHHhC----CCCcEEEEEecCCCc--chHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh----ccCC
Confidence 344555555443 245899999988531 234445567888899999876555444556666666653 4678
Q ss_pred EEEEEcCCchHHHHHHhhh
Q 037501 114 GVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 114 ~IV~vGGDGTv~EVvNGL~ 132 (438)
+|++ ..|.+.-.++..+.
T Consensus 196 ai~~-~~D~~a~g~~~~l~ 213 (302)
T 2qh8_A 196 VIYA-LIDNTVASAIEGMI 213 (302)
T ss_dssp EEEE-CSCHHHHTTHHHHH
T ss_pred EEEE-CCcHhHHHHHHHHH
Confidence 7776 57877644444443
No 57
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=61.08 E-value=6.4 Score=32.15 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=24.4
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhhccCC
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNMEVGR 51 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~~~~r 51 (438)
.|.|.+.+.++.+.|++.|+..+.....+
T Consensus 97 ~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 125 (129)
T 1x05_A 97 HYFLQAATPKERTEWIKAIQMASRTGKSG 125 (129)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCCSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHccCCC
Confidence 47899999999999999999999754433
No 58
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=60.88 E-value=14 Score=29.18 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=22.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.|.|.+.+.++++.|++.|++.+.
T Consensus 77 r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 77 ELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 5689999999999999999998875
No 59
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=60.67 E-value=10 Score=30.19 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=23.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+.+.|.+.+.++.+.|++.|+..+...
T Consensus 75 r~~~l~a~s~~e~~~Wi~~l~~~~~~~ 101 (115)
T 2cod_A 75 RTFVFRVEKEEERNDWISILLNALKSQ 101 (115)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 348899999999999999999998653
No 60
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=59.81 E-value=16 Score=36.09 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCCCC---hhhhHHHHHHHHHhcceeEEEEEeCCCC----------hHHHHHHHhhhhhcCCCcEEEEE-
Q 037501 53 KNLLIFIHPMSGKGS---GRRTWETVAPIFVRAKVNTKVIVTQRAG----------QAFDVMASTKNKELSSYDGVLAV- 118 (438)
Q Consensus 53 k~llvivNP~sG~g~---~~~~~~~v~~~l~~agi~~~v~~T~~~~----------ha~~~~~~~~~~~~~~~d~IV~v- 118 (438)
..-.-||.|.+|-.. ....+++....|+..|+++.+-.+-..+ -|.|+.+.+. ....++|+|+
T Consensus 5 ~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~---Dp~i~aI~~~r 81 (346)
T 4eys_A 5 VSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFS---DDSIDMILCAI 81 (346)
T ss_dssp CCEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHH---CTTCCEEEECC
T ss_pred CcEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhh---CCCCCEEEEcc
Confidence 345778899987431 2345677778899999887764333332 2233333332 2567888776
Q ss_pred cCCchHHHHHHhh
Q 037501 119 GGDGFFNEILNGF 131 (438)
Q Consensus 119 GGDGTv~EVvNGL 131 (438)
||+|+. +++..|
T Consensus 82 GG~g~~-rlLp~L 93 (346)
T 4eys_A 82 GGDDTY-RLLPYL 93 (346)
T ss_dssp CCSCGG-GGHHHH
T ss_pred cccCHH-HHHHHh
Confidence 999975 455554
No 61
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=59.58 E-value=29 Score=31.93 Aligned_cols=76 Identities=7% Similarity=-0.004 Sum_probs=49.2
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
++.+.+.|++ ... ..-...+++.++..+++.|+++.+..+.......+..+.+. ..++|+||+++.|..- +.+.
T Consensus 10 ~~~~~Igvi~-~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~-~~~~ 83 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQ-QPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM---RERCEAAILLGTRFDT-DELG 83 (289)
T ss_dssp ---CEEEEEE-ETT-CHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT---TTTEEEEEEETCCCCH-HHHH
T ss_pred CCCCEEEEEE-ecC-CchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHH---hCCCCEEEEECCCCCH-HHHH
Confidence 4667888888 332 11223444567888889999988887776544555566553 3679999999988765 5555
Q ss_pred hh
Q 037501 130 GF 131 (438)
Q Consensus 130 GL 131 (438)
.+
T Consensus 84 ~~ 85 (289)
T 3k9c_A 84 AL 85 (289)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 62
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=59.04 E-value=44 Score=32.85 Aligned_cols=77 Identities=9% Similarity=0.011 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD 113 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d 113 (438)
....++...+.+.... +.++++|++- |..|...++.+.+...+...+++++++..... +..++... +..+|
T Consensus 239 ~~~~l~~~~~~~~~~~-~~~kv~iiy~--S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~-----l~~~D 309 (414)
T 2q9u_A 239 MGLAIAEYDRWSKGQH-CQKKVTVVLD--SMYGTTHRMALALLDGARSTGCETVLLEMTSS-DITKVALH-----TYDSG 309 (414)
T ss_dssp HHHHHHHHHHHHTTCC-CCSEEEEEEC--CSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-CHHHHHHH-----HHTCS
T ss_pred HHHHHHHHHHHhcCcc-cCCeEEEEEE--CCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-CHHHHHHH-----HHhCC
Confidence 4444444444443211 4578888874 44567778888899889888888877654432 23334333 35689
Q ss_pred EEEEEc
Q 037501 114 GVLAVG 119 (438)
Q Consensus 114 ~IV~vG 119 (438)
+||++.
T Consensus 310 ~iiigs 315 (414)
T 2q9u_A 310 AVAFAS 315 (414)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 888774
No 63
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=59.01 E-value=46 Score=30.39 Aligned_cols=82 Identities=6% Similarity=-0.066 Sum_probs=49.6
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEeCC-CChH---HHHHHHhhhhhcCCCcEEEEEcCCch-
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVTQR-AGQA---FDVMASTKNKELSSYDGVLAVGGDGF- 123 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T~~-~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGT- 123 (438)
++.+++.|++.-.....-...+.+.++..+++. |+.+.+..+.. ..+. .++++.+. ..++|+||+++-|..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~ 82 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVI---EEQPDGVMFAPTVPQY 82 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHH---TTCCSEEEECCSSGGG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHH---hcCCCEEEECCCChHH
Confidence 355667777654323333334455678888888 88888776632 2233 23344442 368999999998874
Q ss_pred HHHHHHhhhhc
Q 037501 124 FNEILNGFLSS 134 (438)
Q Consensus 124 v~EVvNGL~~~ 134 (438)
..+.+.-+...
T Consensus 83 ~~~~~~~~~~~ 93 (304)
T 3gbv_A 83 TKGFTDALNEL 93 (304)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 45666666543
No 64
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=58.99 E-value=25 Score=32.98 Aligned_cols=75 Identities=15% Similarity=0.076 Sum_probs=44.8
Q ss_pred cCCCcEEEEEEcCCC-------CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc-EEEEEc
Q 037501 49 VGRPKNLLIFIHPMS-------GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD-GVLAVG 119 (438)
Q Consensus 49 ~~rpk~llvivNP~s-------G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d-~IV~vG 119 (438)
.+.++++.+|||=.. ....+.. -.+.+...|+..|+++++..=-...+..+.++++.+.+...+| .|+++=
T Consensus 12 ~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~l 91 (250)
T 2j32_A 12 DYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLL 91 (250)
T ss_dssp CSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEE
T ss_pred CCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEC
Confidence 346677877776421 1222322 2456999999999998877544555555666666543334566 455554
Q ss_pred CCch
Q 037501 120 GDGF 123 (438)
Q Consensus 120 GDGT 123 (438)
|-|.
T Consensus 92 sHG~ 95 (250)
T 2j32_A 92 SHGE 95 (250)
T ss_dssp SCEE
T ss_pred CCCC
Confidence 5554
No 65
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=58.63 E-value=3.8 Score=36.63 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=40.0
Q ss_pred ccCCCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCC-----hHH-HHH--HHhhhhhcCCCcEEEE
Q 037501 48 EVGRPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAG-----QAF-DVM--ASTKNKELSSYDGVLA 117 (438)
Q Consensus 48 ~~~rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~-----ha~-~~~--~~~~~~~~~~~d~IV~ 117 (438)
...++++++|++-|. ....+ .+...|+.++++++++-.+... +.. .+. ..+.+.+...||.||+
T Consensus 19 ~~~~~~kV~ill~~g------~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~liv 92 (193)
T 1oi4_A 19 KAGLSKKIAVLITDE------FEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLL 92 (193)
T ss_dssp TTTCCCEEEEECCTT------BCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEE
T ss_pred hhccCCEEEEEECCC------CCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEE
Confidence 345678899998862 22233 4677889999888766433211 000 000 0011112246999999
Q ss_pred EcCCch
Q 037501 118 VGGDGF 123 (438)
Q Consensus 118 vGGDGT 123 (438)
.||.|.
T Consensus 93 pGG~~~ 98 (193)
T 1oi4_A 93 PGGHSP 98 (193)
T ss_dssp CCBTHH
T ss_pred CCCcCH
Confidence 999775
No 66
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=58.53 E-value=9.2 Score=29.70 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=22.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|++.+..
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999998864
No 67
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=58.51 E-value=49 Score=31.13 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCc
Q 037501 34 CEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYD 113 (438)
Q Consensus 34 ~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d 113 (438)
....++.+.+.+ ..-|++.||+||.-.. +....+.++..+...|+++.........+..+.++.+. .+.|
T Consensus 126 ~~~~l~l~~~l~----P~~k~vgvi~~~~~~~--s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~----~~~d 195 (302)
T 3lkv_A 126 VEQHVELIKEIL----PNVKSIGVVYNPGEAN--AVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA----EKSD 195 (302)
T ss_dssp HHHHHHHHHHHS----TTCCEEEEEECTTCHH--HHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH----TTCS
T ss_pred HHHHHHHHHHhC----CCCCEEEEEeCCCccc--HHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc----CCee
Confidence 344555555543 3568999999985432 22334568888888999876665556666666665553 5677
Q ss_pred EEEEEcCCchHHHHHHhhhh
Q 037501 114 GVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 114 ~IV~vGGDGTv~EVvNGL~~ 133 (438)
+|+ +..|+++-..+..+..
T Consensus 196 ~i~-~~~d~~~~~~~~~i~~ 214 (302)
T 3lkv_A 196 VIY-ALIDNTVASAIEGMIV 214 (302)
T ss_dssp EEE-ECSCHHHHHTHHHHHH
T ss_pred EEE-EeCCcchhhHHHHHHH
Confidence 665 5679888766655543
No 68
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=57.95 E-value=43 Score=32.36 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=41.9
Q ss_pred HhhhccCCC--cEEEEEEcCCC----CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCcE-
Q 037501 44 FLNMEVGRP--KNLLIFIHPMS----GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYDG- 114 (438)
Q Consensus 44 ~~~~~~~rp--k~llvivNP~s----G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d~- 114 (438)
-+|.-..++ +++.+|||=.. ..+.+.. -.+.+...|+..|++|+++.=-...+..+.++++.. .+...+|.
T Consensus 49 e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~dh~~~d~~ 128 (302)
T 3e4c_A 49 EIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDST 128 (302)
T ss_dssp GBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCE
T ss_pred cccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhhhccCCCCEE
Confidence 345433444 46666665332 2233322 245699999999999887654444555555555432 23344563
Q ss_pred EEEEcCCc
Q 037501 115 VLAVGGDG 122 (438)
Q Consensus 115 IV~vGGDG 122 (438)
|+++=|-|
T Consensus 129 vv~~lsHG 136 (302)
T 3e4c_A 129 FLVFMSHG 136 (302)
T ss_dssp EEEEEEEE
T ss_pred EEEEeccC
Confidence 33333333
No 69
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=57.33 E-value=7.7 Score=31.99 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=22.0
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhh
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
.|.|.+.+.++++.|++.|++++..
T Consensus 96 ~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 96 PVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999998864
No 70
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=57.02 E-value=20 Score=34.77 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=46.3
Q ss_pred hhhccCCCcEEEEEEcCCC-------CCCChh-hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE-E
Q 037501 45 LNMEVGRPKNLLIFIHPMS-------GKGSGR-RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG-V 115 (438)
Q Consensus 45 ~~~~~~rpk~llvivNP~s-------G~g~~~-~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~-I 115 (438)
.|.-.+.++++.+|||=.. ..+.+. .=.+.+...|+..|++++++.=-...+..+.++++...+...+|. |
T Consensus 61 ~Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v 140 (305)
T 1f1j_A 61 QYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFA 140 (305)
T ss_dssp BCCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred ccccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEE
Confidence 3444456778888886431 112222 224569999999999887765444555555566655433345664 5
Q ss_pred EEEcCCch
Q 037501 116 LAVGGDGF 123 (438)
Q Consensus 116 V~vGGDGT 123 (438)
+++=|-|.
T Consensus 141 v~ilsHG~ 148 (305)
T 1f1j_A 141 CILLSHGE 148 (305)
T ss_dssp EEEESCEE
T ss_pred EEEecCCC
Confidence 55555554
No 71
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=56.94 E-value=12 Score=36.47 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=43.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC------CCChHHHHHHHhhhh-hcCCCcEEEEE-cCCchH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ------RAGQAFDVMASTKNK-ELSSYDGVLAV-GGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~------~~~ha~~~~~~~~~~-~~~~~d~IV~v-GGDGTv 124 (438)
....-||.|.++-. ...+++....|+..|+++.+-.+- .+++.++=++++.+. .....|+|+|+ ||+|+.
T Consensus 17 Gd~I~ivaPSs~~~--~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~ 94 (311)
T 1zl0_A 17 DGRVALIAPASAIA--TDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCG 94 (311)
T ss_dssp CSEEEEECCSBCCC--HHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGG
T ss_pred cCEEEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHH
Confidence 34688899998864 455678888999999887654322 233444433333221 12456776664 899964
No 72
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=56.92 E-value=18 Score=33.79 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=41.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHH--HHHHHHhcceeEEEEEeCCC-----------------ChHHHHH-------HHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWET--VAPIFVRAKVNTKVIVTQRA-----------------GQAFDVM-------ASTK 105 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~--v~~~l~~agi~~~v~~T~~~-----------------~ha~~~~-------~~~~ 105 (438)
+|+++|++- ..|.-.+...+|- ....|+++|++++++-.+.. +-..+-. ..+.
T Consensus 23 ~kkV~ill~-~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~ 101 (242)
T 3l3b_A 23 ALNSAVILA-GCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE 101 (242)
T ss_dssp -CEEEEECC-CSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred cCEEEEEEe-cCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence 478888874 2344344566664 45678999999887644321 1111111 1132
Q ss_pred hhhcCCCcEEEEEcCCch
Q 037501 106 NKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGT 123 (438)
+.+.+.||.||+.||.|.
T Consensus 102 dv~~~~~D~livPGG~~~ 119 (242)
T 3l3b_A 102 QIRVEEFDMLVIPGGYGV 119 (242)
T ss_dssp GCCGGGCSEEEECCCHHH
T ss_pred HCCcccCCEEEEcCCcch
Confidence 222357999999999885
No 73
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=56.81 E-value=63 Score=27.00 Aligned_cols=112 Identities=7% Similarity=-0.029 Sum_probs=41.9
Q ss_pred eeEEEEEEecCCCCCCceEEEEEeecCCC-hHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCC-----CChhhhHHHH
Q 037501 2 YRFTVHSFQKSKTQPNLWVLAVYTFGHKD-LPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGK-----GSGRRTWETV 75 (438)
Q Consensus 2 ~~~~~~~~~~~~~~~~~w~~~~~~f~~~~-~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~-----g~~~~~~~~v 75 (438)
|.|+-|+..+....+...-.+.+.+.... .+....-++......... +..=.++-++.+.... ..+.+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~ 83 (155)
T 3dlo_A 5 HHHHHHSSGRENLYFQGMIYMPIVVAVDKKSDRAERVLRFAAEEARLR-GVPVYVVHSLPGGGRTKDEDIIEAKETLSWA 83 (155)
T ss_dssp -----------------CCCCCEEEECCSSSHHHHHHHHHHHHHHHHH-TCCEEEEEEECCSTTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcccccccCeEEEEECCCCHHHHHHHHHHHHHHHhc-CCEEEEEEEEcCCCcccHHHHHHHHHHHHHH
Confidence 55666666666544444444555555443 333333333333332211 1212233333322111 1122334456
Q ss_pred HHHHHhcceeEEEEE-eCCCChHHHHHHHhhhhhcCCCcEEEE
Q 037501 76 APIFVRAKVNTKVIV-TQRAGQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 76 ~~~l~~agi~~~v~~-T~~~~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
...+...++++++.. .....-+..+++.+. ..++|.||+
T Consensus 84 ~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~---~~~~DLIV~ 123 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLVRGKEPPDDIVDFAD---EVDAIAIVI 123 (155)
T ss_dssp HHHHHHTTCCEEEEEEESSSCHHHHHHHHHH---HTTCSEEEE
T ss_pred HHHHHhcCCCceEEEEecCCCHHHHHHHHHH---HcCCCEEEE
Confidence 667777888877643 333344555655543 246776655
No 74
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=56.58 E-value=32 Score=31.61 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=45.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHH---HHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFD---VMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~---~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
+.+++.|++ |.....-...+.+-++..+++.|+++.+..+... ....+ +.+.+. ..++|+||+++.+.+ .+
T Consensus 7 ~~~~Ig~i~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 7 QLGIIGLFV-PTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLI---GRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp -CCEEEEEC-SCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHH---HTTCSEEEECCSSSC-HH
T ss_pred CCCeEEEEe-CCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHH---hcCccEEEEecCCCC-HH
Confidence 455666665 4433222233444577788888988776655432 22334 555543 267999999998876 45
Q ss_pred HHHhhhh
Q 037501 127 ILNGFLS 133 (438)
Q Consensus 127 VvNGL~~ 133 (438)
.+.-+..
T Consensus 82 ~~~~l~~ 88 (290)
T 2rgy_A 82 DLDELHR 88 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6655543
No 75
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=56.32 E-value=39 Score=31.17 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHH---------hhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAS---------TKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~---------~~~~~~~~~d~IV~vGGDG 122 (438)
.|+++|+ |.|+ +-......|.++|.+++|+..+-.....+++.+ ....+++++|.||++-||-
T Consensus 31 gk~VLVV-----GgG~---va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~ 102 (223)
T 3dfz_A 31 GRSVLVV-----GGGT---IATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQ 102 (223)
T ss_dssp TCCEEEE-----CCSH---HHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCT
T ss_pred CCEEEEE-----CCCH---HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCH
Confidence 3566665 4443 333333445567888887755443334444432 1123678899999999999
Q ss_pred hHHHHHHhhhh
Q 037501 123 FFNEILNGFLS 133 (438)
Q Consensus 123 Tv~EVvNGL~~ 133 (438)
.+|+.+-.+..
T Consensus 103 ~~N~~I~~~ak 113 (223)
T 3dfz_A 103 AVNKFVKQHIK 113 (223)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 76
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=55.82 E-value=61 Score=30.59 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=59.8
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~ 102 (438)
.+...+.......++.|.+. ..|++.+|... ...+....+.++..|++.|+++.... .....+....++
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~------g~~~ia~i~~~---~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~ 200 (375)
T 4evq_A 130 RTSFANGQIGRATGDAMIKA------GLKKAVTVTWK---YAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALA 200 (375)
T ss_dssp ESSCCHHHHHHHHHHHHHHT------TCCEEEEEEES---SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHH
T ss_pred EeeCChHhHHHHHHHHHHHc------CCcEEEEEecC---chHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHH
Confidence 34445555555554444432 45788888631 22234445668888999998764222 222334445555
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
++.+ .+.|+|++.+-|...-.++..+....
T Consensus 201 ~l~~---~~~dai~~~~~~~~a~~~~~~~~~~g 230 (375)
T 4evq_A 201 EIAS---LKPDCVYAFFSGGGALKFIKDYAAAN 230 (375)
T ss_dssp HHHH---HCCSEEEEECCTHHHHHHHHHHHHTT
T ss_pred HHHh---cCCCEEEEecCcchHHHHHHHHHHcC
Confidence 5532 46899999899988888888876654
No 77
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=54.97 E-value=27 Score=29.93 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=38.9
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+++||+= |..|...++.+.|...|...|++++++.-... +..++...+ ..||.||+..
T Consensus 2 kv~IvY~--S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~-----~~~d~ii~Gs 59 (161)
T 3hly_A 2 SVLIGYL--SDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV-DPQELIEAV-----SSARGIVLGT 59 (161)
T ss_dssp CEEEEEC--TTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC-CHHHHHHHH-----HHCSEEEEEC
T ss_pred EEEEEEE--CCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH-----HhCCEEEEEc
Confidence 4666664 34567788888899999989998877754432 344554433 4588877653
No 78
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=54.90 E-value=9.5 Score=30.67 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=24.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhcc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEV 49 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~ 49 (438)
+.+.|.+.+.++...|++.|+..+....
T Consensus 87 r~~~l~a~s~~e~~~W~~al~~~i~~~~ 114 (125)
T 1eaz_A 87 RTFYVQADSPEEMHSWIKAVSGAIVAQR 114 (125)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999987543
No 79
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=54.86 E-value=11 Score=37.13 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=43.7
Q ss_pred CcEEEEEEcCCCCCCC-hhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhh-hcCCCcEEEE-EcCCc
Q 037501 52 PKNLLIFIHPMSGKGS-GRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNK-ELSSYDGVLA-VGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~-~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~-~~~~~d~IV~-vGGDG 122 (438)
+-.-.-||-|.++-.. ....+++....|+..|+++.+-.+-. +++.++=++++.+. .....|+|+| .||+|
T Consensus 12 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 91 (336)
T 3sr3_A 12 YGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMN 91 (336)
T ss_dssp TTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 3456889999987421 23456777788999998876543221 34444434443321 1246777665 59999
Q ss_pred hH
Q 037501 123 FF 124 (438)
Q Consensus 123 Tv 124 (438)
+.
T Consensus 92 ~~ 93 (336)
T 3sr3_A 92 SN 93 (336)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 80
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=54.58 E-value=5.3 Score=39.43 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=48.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC------CCC
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ------RAG 95 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~------~~~ 95 (438)
..+.|.....+....+ +.. . ++++|+.++.. .....++|...| .+| ++++++-. ...
T Consensus 12 ~~i~~G~g~l~~l~~~-------l~~---~-~~~liVtd~~~----~~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~ 74 (354)
T 1xah_A 12 YPIYVEHGAIKYIGTY-------LNQ---F-DQSFLLIDEYV----NQYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFE 74 (354)
T ss_dssp CEEEEETTGGGHHHHH-------HTT---C-SCEEEEEEHHH----HHHHHHHHC--------CEEEEEECSGGGGCSHH
T ss_pred ccEEEcCChHHHHHHH-------HHh---c-CeEEEEECCcH----HHHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHH
Confidence 4577777655444333 221 1 78999998532 122456788888 787 44432221 122
Q ss_pred hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhh
Q 037501 96 QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 96 ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
...++++.+.+...++.|.||++|| |++..+.-.+.
T Consensus 75 ~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ak~vA 110 (354)
T 1xah_A 75 QYQETLEYILSHHVTRNTAIIAVGG-GATGDFAGFVA 110 (354)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCceEEEECC-hHHHHHHHHHH
Confidence 3344454444322334499999998 78888776554
No 81
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=54.49 E-value=65 Score=30.44 Aligned_cols=99 Identities=9% Similarity=-0.083 Sum_probs=59.5
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeCCCChHHHHHHHh
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQRAGQAFDVMAST 104 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~~~~ha~~~~~~~ 104 (438)
+...+.......++.|.+.+ ..|++.+|+.+... .+....+.++..|++.|+++... +.....+....++++
T Consensus 128 ~~~~~~~~~~~~~~~l~~~~-----g~~~iaii~~~~~~--~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l 200 (366)
T 3td9_A 128 VCFIDPFQGAAMAVFAYKNL-----GAKRVVVFTDVEQD--YSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVA 200 (366)
T ss_dssp SSCCHHHHHHHHHHHHHHTS-----CCCEEEEEEETTCH--HHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHH
T ss_pred EeCCcHHHHHHHHHHHHHhc-----CCcEEEEEEeCCCc--HHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHH
Confidence 44445545555554443321 45789999754322 23334566888899999876433 233333444555555
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.. .+.|+|++.+-|...-.++..+...
T Consensus 201 ~~---~~~d~v~~~~~~~~a~~~~~~~~~~ 227 (366)
T 3td9_A 201 MS---FNPDAIYITGYYPEIALISRQARQL 227 (366)
T ss_dssp HH---TCCSEEEECSCHHHHHHHHHHHHHT
T ss_pred Hh---cCCCEEEEccchhHHHHHHHHHHHc
Confidence 42 5789999988887777777777654
No 82
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=54.27 E-value=39 Score=30.30 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=45.2
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGF 131 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL 131 (438)
.+++.|+-.+.-- .-.+.+..+| +++++.+.-+...++++.++++.+ ++++.|| ||+++.+.+.-+
T Consensus 94 ~~kIavvg~~~~~-----~~~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~---~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 94 GNELALIAYKHSI-----VDKHEIEAML---GVKIKEFLFSSEDEITTLISKVKT---ENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp CSEEEEEEESSCS-----SCHHHHHHHH---TCEEEEEEECSGGGHHHHHHHHHH---TTCCEEE---ECHHHHHHHHHT
T ss_pred CCcEEEEeCcchh-----hHHHHHHHHh---CCceEEEEeCCHHHHHHHHHHHHH---CCCeEEE---CCHHHHHHHHHc
Confidence 3577777554332 2245677777 567777777888999999988864 7888766 478887777543
No 83
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=54.19 E-value=11 Score=30.68 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
++|.|.+.+.++++.|++.|+..+..
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999864
No 84
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=54.15 E-value=9.2 Score=31.54 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=22.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++|.|.+.|.++...|++.|+++|.
T Consensus 99 ~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 99 SEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999885
No 85
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=53.86 E-value=77 Score=29.78 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=58.7
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~ 103 (438)
+...+.......++.|.+. .-|++.+|.. . ...+....+.++..|++.|+++..... ....+....+++
T Consensus 119 ~~~~~~~~~~~~~~~l~~~------g~~~ia~i~~-~--~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~ 189 (368)
T 4eyg_A 119 TSFTLAQSSIIIGDWAAKN------GIKKVATLTS-D--YAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQR 189 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHT------TCCEEEEEEE-S--SHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHH
T ss_pred ecCChHHHHHHHHHHHHHc------CCCEEEEEec-C--chHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHH
Confidence 4444444454444444432 4578888873 2 222334456688888999987643322 223344455555
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.+ .+.|+|++.+.|.....+++.+...
T Consensus 190 l~~---~~~d~v~~~~~~~~a~~~~~~~~~~ 217 (368)
T 4eyg_A 190 MKD---AKPDAMFVFVPAGQGGNFMKQFAER 217 (368)
T ss_dssp HHH---HCCSEEEEECCTTCHHHHHHHHHHT
T ss_pred HHh---cCCCEEEEeccchHHHHHHHHHHHc
Confidence 542 4689999988888888888888665
No 86
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=53.64 E-value=27 Score=32.83 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=39.0
Q ss_pred CCcEEEEEEc-CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 51 RPKNLLIFIH-PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 51 rpk~llvivN-P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
+.+++.+++. +...+.-...+++-++..+++.|+++.+..+... ....+..+.+. ..++|+||++|.
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~---~~~vdgIi~~~~ 72 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELV---DGGVNLIFGHGH 72 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHH---HTTCCEEEECST
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHH---HCCCCEEEEcCH
Confidence 4567777774 3322233345667788888889987766544332 22334455553 267999999874
No 87
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=53.44 E-value=27 Score=34.00 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=42.4
Q ss_pred hhccCC-CcEEEEEEcCCC-----CCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC-CCc-EEE
Q 037501 46 NMEVGR-PKNLLIFIHPMS-----GKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS-SYD-GVL 116 (438)
Q Consensus 46 ~~~~~r-pk~llvivNP~s-----G~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~-~~d-~IV 116 (438)
|.-..+ ++++.+|||=.. ..+.+... .+.+..+|+..|++++++.=-...+..+.++++.+.+.. .+| .||
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 443445 788888887431 22333332 346999999999988766544444555555555543323 566 344
Q ss_pred EE
Q 037501 117 AV 118 (438)
Q Consensus 117 ~v 118 (438)
++
T Consensus 133 ~i 134 (316)
T 2fp3_A 133 VL 134 (316)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 88
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=53.36 E-value=83 Score=30.13 Aligned_cols=100 Identities=7% Similarity=-0.153 Sum_probs=57.3
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~ 102 (438)
.+...+.......++.|.+.+ ..|++.+|..+ ....+....+.++..|+++|+++....+- ...+....+.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~-----g~~~iaii~~~--~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~ 191 (391)
T 3eaf_A 119 YPAPDYSTQACSGLAFLASEF-----GQGKLALAYDS--KVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERI 191 (391)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH-----CSEEEEEEECT--TCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHhc-----CCCEEEEEEec--CChhHHHHHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHH
Confidence 344455555555555554433 45889999875 22234455667888899999876543322 2334455555
Q ss_pred H--hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 S--TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~--~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+ +. ..+.|+|++.+-....-.++..+...
T Consensus 192 ~~~l~---~~~~dav~~~~~~~~~~~~~~~~~~~ 222 (391)
T 3eaf_A 192 AREML---AADPDYVWCGNTISSCSLLGRAMAKV 222 (391)
T ss_dssp HHHHH---TTCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHH---HcCCCEEEEecCcHHHHHHHHHHHHC
Confidence 5 53 25688776654334445555655544
No 89
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=53.16 E-value=62 Score=30.07 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=57.9
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~~ 102 (438)
.+...+.......++.|.+.+ ..+++.+|..+. ..+....+.++..|++.|+++... ......+....++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~-----g~~~i~~i~~~~---~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~ 187 (346)
T 1usg_A 116 RTAGLDSSQGPTAAKYILETV-----KPQRIAIIHDKQ---QYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIA 187 (346)
T ss_dssp ECSCCGGGHHHHHHHHHHHTT-----CCSSEEEEECSS---HHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHH
T ss_pred eccCChHHHHHHHHHHHHHhc-----CCCeEEEEECCC---chHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHH
Confidence 344555555555555554322 357888887532 123334556778888899876432 2222234445555
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++.+ .+.|+|++.+-|...-.++..+...
T Consensus 188 ~l~~---~~~d~i~~~~~~~~a~~~~~~~~~~ 216 (346)
T 1usg_A 188 RLKK---ENIDFVYYGGYYPEMGQMLRQARSV 216 (346)
T ss_dssp HHHH---TTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHh---cCCCEEEEcCcchHHHHHHHHHHHc
Confidence 5542 4689998887666666777777554
No 90
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=52.98 E-value=24 Score=33.27 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=40.7
Q ss_pred cCCCcEEEEEEcCCC------CCCChh-hhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEE
Q 037501 49 VGRPKNLLIFIHPMS------GKGSGR-RTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVL 116 (438)
Q Consensus 49 ~~rpk~llvivNP~s------G~g~~~-~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV 116 (438)
..+|+++.+|||=.. ..+.+. .-.+.+...|+..|+++++..=-...+..+.++++...+...+|.+|
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v 90 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCIL 90 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEE
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEE
Confidence 346777877776321 111222 22457999999999998877655555666666666544445677433
No 91
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=52.91 E-value=42 Score=30.83 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=45.2
Q ss_pred cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 49 VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 49 ~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.++.+.+.|++. .....-...+.+-++..+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.+.+ .+.
T Consensus 13 ~~~s~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~-~~~ 87 (289)
T 2fep_A 13 SKKTTTVGVIIP-DISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTML---GKQVDGIVFMGGNIT-DEH 87 (289)
T ss_dssp ---CCEEEEEES-CTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSCCC-HHH
T ss_pred cCCCCeEEEEeC-CCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEecCCCC-HHH
Confidence 346677888874 2222112234445778888889887766554321 1233444443 367999999987655 455
Q ss_pred HHhhh
Q 037501 128 LNGFL 132 (438)
Q Consensus 128 vNGL~ 132 (438)
+.-|.
T Consensus 88 ~~~l~ 92 (289)
T 2fep_A 88 VAEFK 92 (289)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 92
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=52.73 E-value=8.3 Score=31.18 Aligned_cols=25 Identities=4% Similarity=0.183 Sum_probs=23.1
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhh
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
.|.|...|++++++|++.|+..+..
T Consensus 78 ~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 78 CLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999865
No 93
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=52.43 E-value=46 Score=30.38 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=44.5
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++.+++.|++ |.....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.+ .+.+
T Consensus 6 ~~~~~Igvi~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~-~~~~ 80 (285)
T 3c3k_A 6 AKTGMLLVMV-SNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLS---GKMVDGVITMDALSE-LPEL 80 (285)
T ss_dssp -CCCEEEEEE-SCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHH---TTCCSEEEECCCGGG-HHHH
T ss_pred CCCCEEEEEe-CCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEeCCCCC-hHHH
Confidence 3556677766 43222222234445778888889888776554321 1223444442 367999999988754 3555
Q ss_pred Hhhh
Q 037501 129 NGFL 132 (438)
Q Consensus 129 NGL~ 132 (438)
.-|.
T Consensus 81 ~~l~ 84 (285)
T 3c3k_A 81 QNII 84 (285)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 94
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.29 E-value=12 Score=30.21 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.|.|.+.+.++++.|++.|+..+..
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 80 RVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999998754
No 95
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=52.21 E-value=75 Score=30.80 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCC
Q 037501 33 TCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSY 112 (438)
Q Consensus 33 ~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~ 112 (438)
.++.+++.....+... ..++++|++- |..|...++.+.+...+...|++++++.-... +..++...+ ..+
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~kv~i~y~--S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~-----~~~ 304 (402)
T 1e5d_A 235 QCTFAVQKYVEYAEQK--PTNKVVIFYD--SMWHSTEKMARVLAESFRDEGCTVKLMWCKAC-HHSQIMSEI-----SDA 304 (402)
T ss_dssp HHHHHHHHHHHHHHCC--CCSEEEEEEC--CSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS-CHHHHHHHH-----HTC
T ss_pred CHHHHHHHHHHHhcCC--CCCcEEEEEE--CCChhHHHHHHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH-----HHC
Confidence 4556666655555322 2477888874 44566777778888888888888877765432 344554433 568
Q ss_pred cEEEEEc
Q 037501 113 DGVLAVG 119 (438)
Q Consensus 113 d~IV~vG 119 (438)
|.||++.
T Consensus 305 d~ii~gs 311 (402)
T 1e5d_A 305 GAVIVGS 311 (402)
T ss_dssp SEEEEEC
T ss_pred CEEEEEC
Confidence 9888875
No 96
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=51.24 E-value=6.1 Score=38.87 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC----CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ----RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~----~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.++++|+.++...+ ...++|...|+.+++.+.++.-- .-....++++.+.+...++.|.||++|| |.+..+
T Consensus 26 ~~~~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D~ 100 (343)
T 3clh_A 26 KQKALIISDSIVAG----LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISDM 100 (343)
T ss_dssp SSCEEEEEEHHHHT----TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHHH
T ss_pred CCEEEEEECCcHHH----HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHHH
Confidence 47899999865433 24567888887765544333111 1223344555554323344599999998 777777
Q ss_pred HHhhh
Q 037501 128 LNGFL 132 (438)
Q Consensus 128 vNGL~ 132 (438)
.-.+.
T Consensus 101 ak~~A 105 (343)
T 3clh_A 101 VGFAS 105 (343)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75554
No 97
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.86 E-value=13 Score=29.69 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+.|.|.+.+.+++..|++.|++++...
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~~~~~~~ 103 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLTNSKEEA 103 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988653
No 98
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=50.49 E-value=16 Score=28.93 Aligned_cols=27 Identities=19% Similarity=0.221 Sum_probs=24.2
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+.+.|.+.+.++...|++.|++.+...
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999998754
No 99
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=50.48 E-value=9.7 Score=31.30 Aligned_cols=26 Identities=12% Similarity=0.381 Sum_probs=23.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+++.|.+.+.++.+.|++.|++.+..
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998864
No 100
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=50.48 E-value=65 Score=29.19 Aligned_cols=78 Identities=4% Similarity=-0.131 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCC--CCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 51 RPKNLLIFIHPM--SGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 51 rpk~llvivNP~--sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
+.+++.|++ |. ....-...+++.++..+++.|+++.+..++.. ....+..+.+. ..++|+||+.+.|.+ .+.
T Consensus 18 ~~~~Ig~i~-~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgii~~~~~~~-~~~ 92 (296)
T 3brq_A 18 STQTLGLVV-TNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL---DLRCDAIMIYPRFLS-VDE 92 (296)
T ss_dssp -CCEEEEEE-CGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH---HTTCSEEEEECSSSC-HHH
T ss_pred CCceEEEEe-CCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---hcCCCEEEEecCCCC-hHH
Confidence 456677766 33 22222334555677888888988766554421 12233444443 267999999998754 245
Q ss_pred HHhhhh
Q 037501 128 LNGFLS 133 (438)
Q Consensus 128 vNGL~~ 133 (438)
+.-+..
T Consensus 93 ~~~l~~ 98 (296)
T 3brq_A 93 IDDIID 98 (296)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 554443
No 101
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=50.28 E-value=66 Score=28.41 Aligned_cols=68 Identities=7% Similarity=0.133 Sum_probs=48.6
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhhc
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~~ 134 (438)
|...-..+.++....|+..|+.|++.+.. .+....++++++. ..+.+ .|++.||.+-|--++-++...
T Consensus 11 gs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~~ 82 (163)
T 3ors_A 11 GSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEAR---ERGINIIIAGAGGAAHLPGMVASLTTL 82 (163)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTT---TTTCCEEEEEEESSCCHHHHHHHHCSS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHH---hCCCcEEEEECCchhhhHHHHHhccCC
Confidence 44444566778889999999999988764 2344556666553 24456 467779999999999998643
No 102
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=50.18 E-value=61 Score=29.09 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=48.3
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcE-EEEEcCCchHHHHHHhhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDG-VLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~-IV~vGGDGTv~EVvNGL~~ 133 (438)
|...-..+.++....|++.|+.|++.+..- +....++++++. ..++++ |.++||.+-+--++-++..
T Consensus 30 GS~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~---~~g~~ViIa~AG~aahLpGvvAa~T~ 100 (181)
T 4b4k_A 30 GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETAR---ERGLKVIIAGAGGAAHLPGMVAAKTN 100 (181)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTT---TTTCCEEEEEECSSCCHHHHHHTTCC
T ss_pred CCHhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHH---hcCceEEEEeccccccchhhHHhcCC
Confidence 555556677888999999999999887642 334556666653 356664 6678999999988887653
No 103
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=49.99 E-value=66 Score=28.62 Aligned_cols=67 Identities=12% Similarity=0.164 Sum_probs=48.3
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~ 133 (438)
|...-..+.++....|+..|++|++.+.. .+....++++++. ..+.+ .|++.||.+-|--++-++..
T Consensus 19 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~ 89 (170)
T 1xmp_A 19 GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETAR---ERGLKVIIAGAGGAAHLPGMVAAKTN 89 (170)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTT---TTTCCEEEEEEESSCCHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHH---hCCCcEEEEECCchhhhHHHHHhccC
Confidence 55555667778899999999999988764 2345556666543 24456 46678999999999988754
No 104
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=49.83 E-value=77 Score=30.29 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=61.0
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe--CCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT--QRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T--~~~~ha~~~~~~ 103 (438)
+...+.......++.|.+.+ .-|++.+|.... ..+....+.++..|++.|+++....+ ....+....+.+
T Consensus 122 ~~~~~~~~~~~~~~~l~~~~-----g~~~iaii~~~~---~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~ 193 (392)
T 3lkb_A 122 PTTSYSEQVVALLEYIAREK-----KGAKVALVVHPS---PFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKR 193 (392)
T ss_dssp EECCHHHHHHHHHHHHHHHC-----TTCEEEEEECSS---HHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhC-----CCCEEEEEEeCC---chhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHH
Confidence 34455555655555555432 348888887432 22344556678888889987654332 222344455555
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.. .+.|+|++++-|...-.++..+...
T Consensus 194 l~~---~~~dav~~~~~~~~a~~~~~~~~~~ 221 (392)
T 3lkb_A 194 FEQ---AGVEYVVHQNVAGPVANILKDAKRL 221 (392)
T ss_dssp HHH---TTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHh---cCCCEEEEecCcchHHHHHHHHHHc
Confidence 542 5789999999888888888877654
No 105
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.78 E-value=75 Score=27.28 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDV 100 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~ 100 (438)
+++.|.|+++|-|+.. +--.+...|.+.|.++-++-....+....+
T Consensus 2 ~vi~v~s~kgG~GKTt-~a~~la~~la~~g~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTT-AVINIATALSRSGYNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp EEEEECCSSTTSSHHH-HHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred eEEEEEeCCCCccHHH-HHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 6788999999988753 333577777888888888887766666554
No 106
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=49.78 E-value=36 Score=31.25 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=45.0
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++.+++.|++. .....-...+.+-++..+++.|+++.+..+... ....++.+.+. ..++|+||+++.+.+-.+++
T Consensus 18 ~~~~~Ig~i~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgii~~~~~~~~~~~~ 93 (293)
T 2iks_A 18 GRTRSIGLVIP-DLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLL---QRQVDAIIVSTSLPPEHPFY 93 (293)
T ss_dssp CCCCEEEEEES-CSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSSCTTCHHH
T ss_pred CCCcEEEEEeC-CCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCCCcHHHH
Confidence 35567777764 322222223444577788888988877665432 12233444443 26799999999876533344
Q ss_pred Hhh
Q 037501 129 NGF 131 (438)
Q Consensus 129 NGL 131 (438)
.-+
T Consensus 94 ~~~ 96 (293)
T 2iks_A 94 QRW 96 (293)
T ss_dssp HTT
T ss_pred HHH
Confidence 444
No 107
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=49.71 E-value=12 Score=30.35 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=23.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhcc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEV 49 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~ 49 (438)
+.+.|.+.+.++.+.|++.|+..+....
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~a~~~~~ 122 (128)
T 2dkp_A 95 RTYYFCTDTGKEMELWMKAMLDAALVQT 122 (128)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhccC
Confidence 4588999999999999999999876443
No 108
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=49.71 E-value=50 Score=29.95 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+++.|++ |.....-...+.+.++..+++.|+++.+..++.. ....++.+.+. ..++|+||+.+.+.+ .+++.
T Consensus 6 ~~~~Ig~i~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgii~~~~~~~-~~~~~ 80 (289)
T 1dbq_A 6 HTKSIGLLA-TSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA---QKRVDGLLVMCSEYP-EPLLA 80 (289)
T ss_dssp --CEEEEEE-SCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEEECSCCC-HHHHH
T ss_pred CCCEEEEEe-CCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHH---hCCCCEEEEEeccCC-HHHHH
Confidence 456666666 4332211223344577778888888777655422 12223444443 367999999998764 23444
Q ss_pred hh
Q 037501 130 GF 131 (438)
Q Consensus 130 GL 131 (438)
-|
T Consensus 81 ~l 82 (289)
T 1dbq_A 81 ML 82 (289)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 109
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=49.61 E-value=33 Score=31.46 Aligned_cols=78 Identities=9% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh---HHHHHHHhhhhhcCCCcEEEEEcCCch-HH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ---AFDVMASTKNKELSSYDGVLAVGGDGF-FN 125 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h---a~~~~~~~~~~~~~~~d~IV~vGGDGT-v~ 125 (438)
++.+++.|++.-.+ ..-...+.+.++..+++.|+++.+..+....+ ..+.++.+. ..++|+||+.+.|.. +.
T Consensus 3 ~~~~~Igvi~~~~~-~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vdgiii~~~~~~~~~ 78 (304)
T 3o1i_D 3 GSDEKICAIYPHLK-DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCT---QWGANAIILGTVDPHAYE 78 (304)
T ss_dssp --CCEEEEEESCSC-SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHH---HHTCSEEEECCSSTTSST
T ss_pred CCCcEEEEEeCCCC-CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhHHH
Confidence 46677888775332 11122334457778888899888877764222 233444443 257999999988764 23
Q ss_pred HHHHhh
Q 037501 126 EILNGF 131 (438)
Q Consensus 126 EVvNGL 131 (438)
+.++-+
T Consensus 79 ~~~~~~ 84 (304)
T 3o1i_D 79 HNLKSW 84 (304)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 344444
No 110
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=49.57 E-value=68 Score=30.30 Aligned_cols=98 Identities=2% Similarity=-0.023 Sum_probs=60.0
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE--EEeCCCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV--IVTQRAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v--~~T~~~~ha~~~~~ 102 (438)
.+...+.......++.|.+ ...|++.+|.... ..+....+.++..|++.|+++.. .......+....+.
T Consensus 120 ~~~~~~~~~~~~~~~~l~~------~g~~~iaii~~~~---~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~ 190 (364)
T 3lop_A 120 PIKASYQQEIDKMITALVT------IGVTRIGVLYQED---ALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVD 190 (364)
T ss_dssp CCSCCHHHHHHHHHHHHHH------TTCCCEEEEEETT---HHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHH
T ss_pred EeCCChHHHHHHHHHHHHH------cCCceEEEEEeCc---hhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHH
Confidence 3444555555555555542 2457888887532 22334456688889999887532 22333344455566
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++.. .+.|+|++++-|...-.++..+...
T Consensus 191 ~l~~---~~~d~v~~~~~~~~a~~~~~~~~~~ 219 (364)
T 3lop_A 191 KLLA---ADVQAIFLGATAEPAAQFVRQYRAR 219 (364)
T ss_dssp HHHH---SCCSEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHh---CCCCEEEEecCcHHHHHHHHHHHHc
Confidence 5542 5789999988777777788877654
No 111
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=49.55 E-value=35 Score=30.76 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+++.|++. ....--...+++.++..+++.|+++.+..+... ....++.+.+. ..++|+||+.+.+.. .+.+.
T Consensus 2 ~s~~Ig~i~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgii~~~~~~~-~~~~~ 76 (275)
T 3d8u_A 2 NAYSIALIIP-SLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFL---ESRPAGVVLFGSEHS-QRTHQ 76 (275)
T ss_dssp --CEEEEEES-CSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHH---TSCCCCEEEESSCCC-HHHHH
T ss_pred CceEEEEEeC-CCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHH---hcCCCEEEEeCCCCC-HHHHH
Confidence 4466777764 322212223445577888888988776655432 12233445443 367999999988754 35555
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-+.
T Consensus 77 ~l~ 79 (275)
T 3d8u_A 77 LLE 79 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 112
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=49.44 E-value=38 Score=30.96 Aligned_cols=77 Identities=9% Similarity=-0.030 Sum_probs=46.7
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++.+++.|++. .....-...+++.++..+++.|+++.+..+... ....++.+.+. ..++|+||+.+.+. ..+.+
T Consensus 6 ~~~~~Igvv~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 6 KRSNVVGLIVS-DIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFF---ERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp -CCCEEEEEES-CTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCCSS-CCHHH
T ss_pred CCCcEEEEEEC-CCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HCCCCEEEEeCCCC-ChHHH
Confidence 45667777774 322222234455678888889998887776542 22233445443 36899999999887 34455
Q ss_pred Hhh
Q 037501 129 NGF 131 (438)
Q Consensus 129 NGL 131 (438)
.-+
T Consensus 81 ~~~ 83 (291)
T 3egc_A 81 RTE 83 (291)
T ss_dssp HHS
T ss_pred HHh
Confidence 444
No 113
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=49.37 E-value=25 Score=33.64 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCcEEEEEEcCCC----CCC----ChhhhHHH--HHHHHHhcceeEEEEEeC
Q 037501 51 RPKNLLIFIHPMS----GKG----SGRRTWET--VAPIFVRAKVNTKVIVTQ 92 (438)
Q Consensus 51 rpk~llvivNP~s----G~g----~~~~~~~~--v~~~l~~agi~~~v~~T~ 92 (438)
..||++||+-+.. +.| .+....+- ...+|.++|++++++-.+
T Consensus 47 g~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~ 98 (291)
T 1n57_A 47 GKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATIS 98 (291)
T ss_dssp SSCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3478998887652 222 23455564 456789999998877543
No 114
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=49.28 E-value=18 Score=31.42 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=28.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCC
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMS 63 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~s 63 (438)
+.|.|..+++++.++|++.|++.+..... ++--++|..
T Consensus 97 rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~----~~~~yHpg~ 134 (164)
T 2lul_A 97 NTLYIFAPSPQSRDLWVKKLKEEIKNNNN----IMIKYHPKF 134 (164)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTCSC----CCSEECCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHChh----hhhhcCCCc
Confidence 46788899999999999999999975433 333455543
No 115
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=49.24 E-value=72 Score=28.26 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcE-EEEEcCCchHHHHHHhhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDG-VLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~-IV~vGGDGTv~EVvNGL~~ 133 (438)
|...-..+.++....|+..|+.|++.+..- +....++++++. ..+.++ |++.|+.+-|--++-++..
T Consensus 13 gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~---~~g~~ViIa~AG~aa~LpgvvA~~t~ 83 (166)
T 3oow_A 13 GSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAK---ERGLKVIIAGAGGAAHLPGMVAAKTT 83 (166)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTT---TTTCCEEEEEECSSCCHHHHHHHTCS
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHH---hCCCcEEEEECCcchhhHHHHHhccC
Confidence 544556667788999999999999887652 334556666553 244564 6677999999999988864
No 116
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=49.20 E-value=63 Score=30.15 Aligned_cols=98 Identities=4% Similarity=-0.142 Sum_probs=58.6
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE--EEeCCCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV--IVTQRAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v--~~T~~~~ha~~~~~ 102 (438)
.+...+.......++.|.+. ..|++.+|.. . ...+....+.++..|+++|+++.. .......+....+.
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~------g~~~ia~i~~-~--~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~ 184 (362)
T 3snr_A 114 VMPQPIPIMGKVLYEHMKKN------NVKTVGYIGY-S--DSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQAL 184 (362)
T ss_dssp ECSCCHHHHHHHHHHHHHHT------TCCEEEEEEE-S--SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHH
T ss_pred ecCCChHHHHHHHHHHHHhc------CCCEEEEEec-C--chHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHH
Confidence 34455555555555555432 4578888742 2 222344556688889999987532 22222334444455
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++.+ .+.|+|++++-|...-.++..+...
T Consensus 185 ~l~~---~~~dav~~~~~~~~a~~~~~~~~~~ 213 (362)
T 3snr_A 185 KLVA---ANPDAILVGASGTAAALPQTTLRER 213 (362)
T ss_dssp HHHH---HCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred HHHh---cCCCEEEEecCcchHHHHHHHHHHc
Confidence 5432 4689999988787777788777655
No 117
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=49.00 E-value=12 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++|.|.+.+.++.++|++.|+..+.
T Consensus 95 ~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999885
No 118
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=48.91 E-value=62 Score=29.27 Aligned_cols=79 Identities=6% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++.+.+.|++. .....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.+. .+.+
T Consensus 5 ~~s~~Igvi~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 5 QSSKLIAVIVA-NIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIG---SRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCCEEEEEES-CTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHH---TTTCSEEEEESSCC--HHHH
T ss_pred CCCcEEEEEeC-CCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEecCCc--HHHH
Confidence 45667777764 3222222344556788888899988877765432 1223444443 36899999999988 7777
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
.-|...
T Consensus 79 ~~l~~~ 84 (276)
T 3jy6_A 79 QEILHQ 84 (276)
T ss_dssp HHHHTT
T ss_pred HHHHHC
Confidence 766543
No 119
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=48.85 E-value=43 Score=30.59 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
|++||.++..-. ...+.+.|+..|++++++.....+. +. .+++.+|+||+-||-++.
T Consensus 2 ~i~vi~h~~~e~------~g~~~~~l~~~g~~~~~~~~~~~~~-------~p-~~~~~~d~lii~GGp~~~ 58 (236)
T 3l7n_A 2 RIHFILHETFEA------PGAYLAWAALRGHDVSMTKVYRYEK-------LP-KDIDDFDMLILMGGPQSP 58 (236)
T ss_dssp EEEEEECCTTSC------CHHHHHHHHHTTCEEEEEEGGGTCC-------CC-SCGGGCSEEEECCCSSCT
T ss_pred eEEEEeCCCCCC------chHHHHHHHHCCCeEEEEeeeCCCC-------CC-CCccccCEEEECCCCCCc
Confidence 678888754421 2345677888999988775533211 11 124679999999998884
No 120
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=48.79 E-value=51 Score=29.29 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred cEEEEEEcCCC----CCCChhh-hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCc-EEEEEcCCch
Q 037501 53 KNLLIFIHPMS----GKGSGRR-TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYD-GVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~s----G~g~~~~-~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d-~IV~vGGDGT 123 (438)
+++.+|||=.. ....+.. =.+.+..+|+..|+++++..=-...+..+.++++.. .+...+| .|+++=|-|.
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~ 120 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGI 120 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBC
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCC
Confidence 55666665332 1233322 245699999999999887654445555555555532 2334566 4444445553
No 121
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=48.53 E-value=43 Score=29.89 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
.+.+.|++. .....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.+.
T Consensus 2 s~~Igvi~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVT-RLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLK---RRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEES-CTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH---TTTCCEEEEECCTT
T ss_pred CCEEEEEeC-CCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHH---hcCCCEEEEecCcc
Confidence 456666664 3222112234445777888889887776654321 2223444443 36799999998653
No 122
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=48.45 E-value=50 Score=30.49 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=44.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
..+++.||-.+.- ..-.+.+..+| +++++.+.-+...++++.++++.+ +++++|| |||++.+.+.-
T Consensus 105 ~~~kIavVg~~~~-----~~~~~~i~~ll---~~~i~~~~~~~~ee~~~~i~~l~~---~G~~vVV---G~~~~~~~A~~ 170 (225)
T 2pju_A 105 LTSSIGVVTYQET-----IPALVAFQKTF---NLRLDQRSYITEEDARGQINELKA---NGTEAVV---GAGLITDLAEE 170 (225)
T ss_dssp TTSCEEEEEESSC-----CHHHHHHHHHH---TCCEEEEEESSHHHHHHHHHHHHH---TTCCEEE---ESHHHHHHHHH
T ss_pred hCCcEEEEeCchh-----hhHHHHHHHHh---CCceEEEEeCCHHHHHHHHHHHHH---CCCCEEE---CCHHHHHHHHH
Confidence 3456777644332 22244566666 567777777788899998888864 6788766 47887777754
Q ss_pred h
Q 037501 131 F 131 (438)
Q Consensus 131 L 131 (438)
+
T Consensus 171 ~ 171 (225)
T 2pju_A 171 A 171 (225)
T ss_dssp T
T ss_pred c
Confidence 3
No 123
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=48.29 E-value=13 Score=29.29 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=22.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.+.|.+.+.++++.|++.|++...
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 5688999999999999999998753
No 124
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=48.19 E-value=51 Score=30.29 Aligned_cols=70 Identities=13% Similarity=0.021 Sum_probs=45.3
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
++.+.+.|++.-....--...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQ---SHRIDGVLYVTMYR 81 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---hCCCCEEEEecCCc
Confidence 4567787777544332222266777999999999988877765322 2334455443 36899999998774
No 125
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=47.54 E-value=14 Score=29.67 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|++.+..
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~ 121 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISR 121 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999864
No 126
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=47.36 E-value=59 Score=28.44 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=41.8
Q ss_pred CcEEEEEEcCCC---CCCChhhh-----HH----HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 52 PKNLLIFIHPMS---GKGSGRRT-----WE----TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 52 pk~llvivNP~s---G~g~~~~~-----~~----~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+++++|+-=|.- |++. ..+ ++ .++....+.|++++.+.+.+.+...+...++. +.+|+||+=-
T Consensus 7 m~~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~----~~~dgiiINp 81 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTRE-PEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR----GNTDFILINP 81 (153)
T ss_dssp CEEEEEEECTTGGGTTTSS-HHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT----TTCSEEEEEC
T ss_pred cCeEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh----hcCceEEEcc
Confidence 356777766763 3333 122 23 35555556889999999999998888887752 5688888543
No 127
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=47.31 E-value=77 Score=28.51 Aligned_cols=67 Identities=10% Similarity=0.230 Sum_probs=49.1
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~ 133 (438)
|...-..+.++....|+..|+++++.+.. .+....++++++. ..+.+ .|+++||.+-+--++-++..
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~---~~g~~ViIa~AG~aa~LpgvvA~~t~ 91 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAE---ERGIEVIIAGAGGAAHLPGMVASITH 91 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTT---TTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHH---hCCCcEEEEecCcccccHHHHHhccC
Confidence 55555667778899999999999988764 2445566666653 24456 46678999999999999854
No 128
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.19 E-value=12 Score=29.61 Aligned_cols=27 Identities=7% Similarity=0.358 Sum_probs=23.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+.+.|.+.+.++++.|++.|+..+...
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999998653
No 129
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=46.85 E-value=72 Score=28.44 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvN 129 (438)
++.||. |...-..+.++....|+..|+.+++.+.. .+....++++++. ..+.+ .|++.|+.+-|--++-
T Consensus 14 ~V~Iim----GS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~---~~g~~ViIa~AG~aa~LpgvvA 86 (174)
T 3kuu_A 14 KIAIVM----GSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAE---ANGLHVIIAGNGGAAHLPGMLA 86 (174)
T ss_dssp CEEEEE----SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTT---TTTCSEEEEEEESSCCHHHHHH
T ss_pred cEEEEE----CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHH---hCCCcEEEEECChhhhhHHHHH
Confidence 455554 54455566778889999999999988764 2345566666553 24556 4667799999999998
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
++..
T Consensus 87 ~~t~ 90 (174)
T 3kuu_A 87 AKTL 90 (174)
T ss_dssp HTCS
T ss_pred hccC
Confidence 8864
No 130
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=46.81 E-value=2.5e+02 Score=28.50 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCC-c-EEEEEcCCchHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSY-D-GVLAVGGDGFFNEIL 128 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~-d-~IV~vGGDGTv~EVv 128 (438)
++.||. |...-..+.+++...|+..|+.+++.+.. .+....++++++. ..+. + .|+++||.|.+--|+
T Consensus 267 ~V~Ii~----gs~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~---~~g~~~viIa~AG~~a~Lpgvv 339 (425)
T 2h31_A 267 RVVVLM----GSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYE---GDGIPTVFVAVAGRSNGLGPVM 339 (425)
T ss_dssp EEEEEE----SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHH---TTCCCEEEEEECCSSCCHHHHH
T ss_pred eEEEEe----cCcccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHH---HCCCCeEEEEEcCcccchHhHH
Confidence 455554 54555566778899999999999988763 2445566776653 2456 3 577789999999999
Q ss_pred Hhhhhc
Q 037501 129 NGFLSS 134 (438)
Q Consensus 129 NGL~~~ 134 (438)
.|+...
T Consensus 340 a~~t~~ 345 (425)
T 2h31_A 340 SGNTAY 345 (425)
T ss_dssp HHHCSS
T ss_pred hccCCC
Confidence 998654
No 131
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=46.69 E-value=18 Score=28.39 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=23.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.+++..|++.|++++..
T Consensus 79 ~~~~~~a~s~~e~~~Wi~al~~a~~~ 104 (109)
T 1wgq_A 79 VFYVFKADDAHSTQRWIDAFQEGTVS 104 (109)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999999764
No 132
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=46.46 E-value=15 Score=30.45 Aligned_cols=26 Identities=4% Similarity=0.193 Sum_probs=23.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
++|.|.+.+.+++++|++.|+..+..
T Consensus 100 ~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 100 HEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999864
No 133
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.38 E-value=15 Score=30.24 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=23.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+.|.|.+.+.++++.|++.|+..+...
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~a~~~~ 116 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALMEANSTP 116 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 468899999999999999999998643
No 134
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=45.89 E-value=74 Score=27.82 Aligned_cols=44 Identities=5% Similarity=-0.026 Sum_probs=33.2
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
.++......|++++++.|.+.+...+...++. +.+|+||+=-|=
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~----~~~dgiIINpgA 77 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAF----QNTDFIIINPGA 77 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT----TTCCEEEEECTT
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh----hcCcEEEECcch
Confidence 45556667789999999999998888887753 468988865543
No 135
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=45.45 E-value=21 Score=35.64 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=45.1
Q ss_pred CCcEEEEEEcCCCCCC-ChhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhh-hcCCCcEEEE-EcCC
Q 037501 51 RPKNLLIFIHPMSGKG-SGRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNK-ELSSYDGVLA-VGGD 121 (438)
Q Consensus 51 rpk~llvivNP~sG~g-~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~-~~~~~d~IV~-vGGD 121 (438)
++-.-.-||.|.|+-. .....+++....|+..|+++.+-.+-. ++..++=++++.+. .....++|+| .||+
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3445788999998742 123456777788999998876543322 33444434443321 1246677776 6999
Q ss_pred chH
Q 037501 122 GFF 124 (438)
Q Consensus 122 GTv 124 (438)
|+.
T Consensus 121 ga~ 123 (371)
T 3tla_A 121 NSN 123 (371)
T ss_dssp CGG
T ss_pred cHH
Confidence 964
No 136
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=45.22 E-value=83 Score=28.44 Aligned_cols=78 Identities=5% Similarity=-0.061 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch----HHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF----FNEI 127 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT----v~EV 127 (438)
+.+.|++. ....--...+++.++..+++.|+++.+..+... ....++.+.+. ..++|+||+.+.|.. ..++
T Consensus 16 ~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~~~~ 91 (298)
T 3tb6_A 16 KTIGVLTT-YISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLL---SQHIDGLIVEPTKSALQTPNIGY 91 (298)
T ss_dssp CEEEEEES-CSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTCCSEEEECCSSTTSCCTTHHH
T ss_pred ceEEEEeC-CCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---HCCCCEEEEecccccccCCcHHH
Confidence 56666664 333333345566688889999998887766532 22233444443 368999999998863 3356
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
+.-+...
T Consensus 92 ~~~~~~~ 98 (298)
T 3tb6_A 92 YLNLEKN 98 (298)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 6655543
No 137
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=45.21 E-value=21 Score=35.06 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=44.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-----CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-----AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.++++|+.++.. .. ..++|...|+ .++. ++.... -....++.+.+.+...++.|.||++|| |.+..
T Consensus 28 ~~kvliVtd~~v----~~-~~~~v~~~L~-~~~~--~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRV----EG-FAQEVAKALG-VRHL--LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGG----HH-HHHHHHHHHT-CCCE--EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcH----HH-HHHHHHHHhc-cCeE--EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 478999998643 22 5567888887 4544 223211 123444544444333456799999998 77778
Q ss_pred HHHhhh
Q 037501 127 ILNGFL 132 (438)
Q Consensus 127 VvNGL~ 132 (438)
+.-.+.
T Consensus 99 ~ak~~A 104 (348)
T 1ujn_A 99 LGGFVA 104 (348)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 138
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.20 E-value=16 Score=28.96 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=23.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999864
No 139
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=45.17 E-value=14 Score=33.23 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCC--h----------HHHHHHHhhhhhcCCCcEEEE
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAG--Q----------AFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~--h----------a~~~~~~~~~~~~~~~d~IV~ 117 (438)
+|+++|++-|.. ...+ .....|+.+|++++++-.+... . +.....++ +...||.||+
T Consensus 2 ~~kV~ill~~g~------~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~---~~~~~D~liv 72 (205)
T 2ab0_A 2 SASALVCLAPGS------EETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEV---ADGEYDVIVL 72 (205)
T ss_dssp CCEEEEEECTTC------CHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHH---TTSCCSEEEE
T ss_pred CcEEEEEEcCCC------cHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHC---CcccCCEEEE
Confidence 578888887622 3344 3567889999988776543320 0 00001111 2367999999
Q ss_pred EcCCch
Q 037501 118 VGGDGF 123 (438)
Q Consensus 118 vGGDGT 123 (438)
.||.+.
T Consensus 73 pGG~~~ 78 (205)
T 2ab0_A 73 PGGIKG 78 (205)
T ss_dssp CCCHHH
T ss_pred CCCccc
Confidence 999753
No 140
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=45.17 E-value=13 Score=32.86 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=38.3
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCChHH-----HHH--HHhhhhhcCCCcEEEEEcC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAGQAF-----DVM--ASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~ha~-----~~~--~~~~~~~~~~~d~IV~vGG 120 (438)
..+||++||+-| +...++ .....|++++++++++-.+..+... .+. ..+.+.+...||.|++.||
T Consensus 3 ~m~kkv~ill~~------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG 76 (190)
T 4e08_A 3 HMSKSALVILAP------GAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGG 76 (190)
T ss_dssp -CCCEEEEEECT------TCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCC
T ss_pred CCCcEEEEEECC------CchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCC
Confidence 356889998864 223344 4668899999988877554311100 000 0011112246999999999
Q ss_pred Cc
Q 037501 121 DG 122 (438)
Q Consensus 121 DG 122 (438)
.+
T Consensus 77 ~~ 78 (190)
T 4e08_A 77 LG 78 (190)
T ss_dssp HH
T ss_pred Ch
Confidence 53
No 141
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=45.07 E-value=52 Score=30.25 Aligned_cols=81 Identities=6% Similarity=-0.018 Sum_probs=49.8
Q ss_pred CCCcEEEEEEcCCC---CCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 50 GRPKNLLIFIHPMS---GKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 50 ~rpk~llvivNP~s---G~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
++.+.+.|++.... ...-...+++.++..+++.|+.+.+..+.......++.+.+. ..++|+||+++.+..- +
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiIi~~~~~~~-~ 79 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVE---TRRVDALIVAHTQPED-F 79 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHH---HTCCSEEEECSCCSSC-H
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHH---cCCCCEEEEeCCCCCh-H
Confidence 45677777774211 111122344457788888999988888775444455555543 2579999999987543 5
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
.+.-|...
T Consensus 80 ~~~~l~~~ 87 (294)
T 3qk7_A 80 RLQYLQKQ 87 (294)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 56555443
No 142
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=45.04 E-value=5.6 Score=35.42 Aligned_cols=50 Identities=26% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHhcceeEEEEEeCCCC----hHHHHH--HHhhhhhcCCCcEEEEEcCCchH
Q 037501 75 VAPIFVRAKVNTKVIVTQRAG----QAFDVM--ASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 75 v~~~l~~agi~~~v~~T~~~~----ha~~~~--~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
...+|+++|++++++-++... +...+. ..+.+.+...||.|++.||-|+-
T Consensus 27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~ 82 (177)
T 4hcj_A 27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI 82 (177)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG
T ss_pred HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH
Confidence 557899999998876543210 000000 01111234579999999999863
No 143
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=45.03 E-value=37 Score=28.03 Aligned_cols=53 Identities=25% Similarity=0.145 Sum_probs=34.8
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCC-CcEEEEE
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSS-YDGVLAV 118 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~-~d~IV~v 118 (438)
+++||+= |..|..+++.+.+...+...+++++++.-.... ..++.. +|.||++
T Consensus 2 ki~iiy~--S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~----------~~~l~~~~d~ii~~ 55 (147)
T 1f4p_A 2 KALIVYG--STTGNTEYTAETIARELADAGYEVDSRDAASVE----------AGGLFEGFDLVLLG 55 (147)
T ss_dssp EEEEEEE--CSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCC----------STTTTTTCSEEEEE
T ss_pred eEEEEEE--CCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCC----------HHHhcCcCCEEEEE
Confidence 5677763 344667778888888888888888766432211 113466 8988775
No 144
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=44.83 E-value=18 Score=29.46 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=23.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.|.|.+.+.+++..|++.|++.+..
T Consensus 104 r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 104 TKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998864
No 145
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=44.64 E-value=1e+02 Score=28.32 Aligned_cols=78 Identities=5% Similarity=-0.038 Sum_probs=48.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
+++.|++ |.....--..+++.++..+++.|+++.+..++... ...++++.+. ..++|+||+.+-|.. +.+.+.-
T Consensus 3 ~~Igvi~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~~~~ 78 (313)
T 3m9w_A 3 VKIGMAI-DDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMI---NRGVDVLVIIPYNGQVLSNVVKE 78 (313)
T ss_dssp CEEEEEE-SCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEEECSSTTSCHHHHHH
T ss_pred cEEEEEe-CCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhhhHHHHHH
Confidence 4455555 43333333456667888999999988877664321 1223444443 368999999998875 3567766
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
+...
T Consensus 79 ~~~~ 82 (313)
T 3m9w_A 79 AKQE 82 (313)
T ss_dssp HHTT
T ss_pred HHHC
Confidence 6543
No 146
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=44.57 E-value=32 Score=31.30 Aligned_cols=77 Identities=5% Similarity=-0.022 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCC--CCChhhhHHHHHHHHHhcceeEEEEEeCCCCh---HHHHHHHhhhhhcCCCcEEEEEcCCch-H
Q 037501 51 RPKNLLIFIHPMSG--KGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ---AFDVMASTKNKELSSYDGVLAVGGDGF-F 124 (438)
Q Consensus 51 rpk~llvivNP~sG--~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h---a~~~~~~~~~~~~~~~d~IV~vGGDGT-v 124 (438)
+.+++.|++ |..+ ..-...+.+.++..+++.|+++.+..+....+ ..++++.+. ..++|+||+.+.+.. +
T Consensus 4 ~~~~Ig~v~-~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgii~~~~~~~~~ 79 (289)
T 3brs_A 4 KQYYMICIP-KVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAI---KRKPDVILLAAADYEKT 79 (289)
T ss_dssp -CCEEEEEC-SCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHH---HTCCSEEEECCSCTTTT
T ss_pred CCcEEEEEe-CCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH---HhCCCEEEEeCCChHHh
Confidence 455666655 4333 22222334456777788888776655531222 234455543 267999999988764 2
Q ss_pred HHHHHhh
Q 037501 125 NEILNGF 131 (438)
Q Consensus 125 ~EVvNGL 131 (438)
.+.+.-+
T Consensus 80 ~~~~~~~ 86 (289)
T 3brs_A 80 YDAAKEI 86 (289)
T ss_dssp HHHHTTT
T ss_pred HHHHHHH
Confidence 3445443
No 147
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=44.53 E-value=83 Score=29.46 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=59.2
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMA 102 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~ 102 (438)
.+...+.......++.|.+.+ ..|++.+|... ...+....+.++..|+++|+++.... .....+....++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~-----g~~~iaii~~~---~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~ 187 (356)
T 3ipc_A 116 RTCGRDDQQGGIAGKYLADHF-----KDAKVAIIHDK---TPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALIS 187 (356)
T ss_dssp ESSCCHHHHHHHHHHHHHHHC-----TTCCEEEEECS---SHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHH
T ss_pred EecCChHHHHHHHHHHHHHhc-----CCCEEEEEeCC---ChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHH
Confidence 344455555555555444432 34788888642 12234445668888999998763222 222334445555
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++.. .+.|+|++++-|...-.++..+...
T Consensus 188 ~l~~---~~~d~v~~~~~~~~a~~~~~~~~~~ 216 (356)
T 3ipc_A 188 KMKE---AGVSIIYWGGLHTEAGLIIRQAADQ 216 (356)
T ss_dssp HHHH---TTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHh---cCCCEEEEccCchHHHHHHHHHHHC
Confidence 5542 5689999888888777788877654
No 148
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=44.32 E-value=67 Score=28.68 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvN 129 (438)
++.||. |...-..+.++....|+..|+.|++.+.. .+....++++++.+ .+.+ .|+++|+.+-|--++-
T Consensus 9 ~V~Iim----gS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~---~g~~ViIa~AG~aa~LpgvvA 81 (174)
T 3lp6_A 9 RVGVIM----GSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAA---RGLEVIIAGAGGAAHLPGMVA 81 (174)
T ss_dssp SEEEEE----SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHH---HTCCEEEEEEESSCCHHHHHH
T ss_pred eEEEEE----CcHHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEecCchhhhHHHHH
Confidence 355553 54455666778999999999999988764 24456677766543 3455 5777899999999999
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
++..
T Consensus 82 ~~t~ 85 (174)
T 3lp6_A 82 AATP 85 (174)
T ss_dssp HHCS
T ss_pred hccC
Confidence 8854
No 149
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=44.17 E-value=19 Score=28.98 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=23.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|++.+..
T Consensus 88 r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 88 RTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999875
No 150
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.99 E-value=67 Score=29.39 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH--HHHHHHhhhhhcCCCcEEEEEcCCch-HHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA--FDVMASTKNKELSSYDGVLAVGGDGF-FNEI 127 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha--~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EV 127 (438)
+.+++.+++. .....--..+++.++..+++.|+++.++........ .+..+.+. ..++|+||+.+.|.. +.+.
T Consensus 3 ~~~~I~~i~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~ 78 (305)
T 3g1w_A 3 LNETYMMITF-QSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAI---AKNPAGIAISAIDPVELTDT 78 (305)
T ss_dssp --CEEEEEES-STTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHH---HHCCSEEEECCSSTTTTHHH
T ss_pred CCceEEEEEc-cCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHH---HhCCCEEEEcCCCHHHHHHH
Confidence 3456666554 444333345556688888888988876433322222 23344433 257999999998875 4566
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
+.-+...
T Consensus 79 ~~~~~~~ 85 (305)
T 3g1w_A 79 INKAVDA 85 (305)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 6666543
No 151
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=43.85 E-value=73 Score=28.27 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=49.4
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHHhhhhc
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvNGL~~~ 134 (438)
|...-..+.++....|+..|+.|++.+.. .+....++++++.+ .+++ .|++.|+.+-|--++-++...
T Consensus 14 gS~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~---~g~~ViIa~AG~aa~LpgvvA~~t~~ 85 (169)
T 3trh_A 14 GSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADN---RGCAVFIAAAGLAAHLAGTIAAHTLK 85 (169)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHH---TTEEEEEEEECSSCCHHHHHHHTCSS
T ss_pred CcHHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHh---CCCcEEEEECChhhhhHHHHHhcCCC
Confidence 54455566778899999999999988764 24455667766532 4556 466779999999999888643
No 152
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.77 E-value=2.1e+02 Score=26.76 Aligned_cols=78 Identities=13% Similarity=0.022 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++ |....--...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++-+.+- +.+.
T Consensus 67 ~~~~Ig~i~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdGiIi~~~~~~~-~~~~ 141 (344)
T 3kjx_A 67 RVNLVAVII-PSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEML---SWRPSGVIIAGLEHSE-AARA 141 (344)
T ss_dssp CCSEEEEEE-SCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHH---TTCCSEEEEECSCCCH-HHHH
T ss_pred CCCEEEEEe-CCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEECCCCCH-HHHH
Confidence 445666666 44333333455566888888889888776665422 2233444443 3679999999877654 4555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-|..
T Consensus 142 ~l~~ 145 (344)
T 3kjx_A 142 MLDA 145 (344)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 153
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=43.61 E-value=15 Score=29.72 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=23.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|+..+..
T Consensus 100 r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 100 THYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999864
No 154
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=43.58 E-value=87 Score=29.52 Aligned_cols=99 Identities=8% Similarity=-0.014 Sum_probs=57.5
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE--EEEeCCCChHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK--VIVTQRAGQAFDVM 101 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~--v~~T~~~~ha~~~~ 101 (438)
+.+...+.......++.|.+. ..|++.+|.. ....+....+.++..|++.|+++. ........+....+
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~------g~~~ia~i~~---~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~ 207 (386)
T 3sg0_A 137 YKVVPNDDIMAEAIGKYIAKT------GAKKVGYIGF---SDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQV 207 (386)
T ss_dssp EECSCCHHHHHHHHHHHHHHT------TCCEEEEEEE---SSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHH
T ss_pred EecCCCcHHHHHHHHHHHHhc------CCCEEEEEec---CchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHH
Confidence 334555555555555555431 4578888853 222334455668888888898763 22222333444455
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.++.+ .+.|+|++.+-+.....++..+...
T Consensus 208 ~~~~~---~~~dav~~~~~~~~a~~~~~~~~~~ 237 (386)
T 3sg0_A 208 LKIIA---TKPDAVFIASAGTPAVLPQKALRER 237 (386)
T ss_dssp HHHHH---TCCSEEEEECCSGGGHHHHHHHHHT
T ss_pred HHHHh---cCCCEEEEecCcchHHHHHHHHHHc
Confidence 55532 5689888877555566777777654
No 155
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=43.52 E-value=1.3e+02 Score=27.99 Aligned_cols=100 Identities=7% Similarity=-0.102 Sum_probs=59.0
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeCCCChHHHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQRAGQAFDVM 101 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~~~~ha~~~~ 101 (438)
+.+...+.......++.|.+. ..|++.+|. +. ...+....+.++..|++.|+++... ......+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~l~~~------g~~~ia~i~-~~--~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~ 187 (358)
T 3hut_A 117 FRAITTPAFEGPNNAAWMIGD------GFTSVAVIG-VT--TDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVI 187 (358)
T ss_dssp EESSCCGGGHHHHHHHHHHHT------TCCEEEEEE-ES--SHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHH
T ss_pred EEecCChHHHHHHHHHHHHHc------CCCEEEEEe-cC--cHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHH
Confidence 445556666666666555443 457888886 22 2233445566888899999876433 222233444555
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
+++.+ .+.|+|++.+-....-.++..+....
T Consensus 188 ~~l~~---~~~d~i~~~~~~~~a~~~~~~~~~~g 218 (358)
T 3hut_A 188 DEIED---EAPQAIYLAMAYEDAAPFLRALRARG 218 (358)
T ss_dssp HHHHH---HCCSEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHh---cCCCEEEEccCchHHHHHHHHHHHcC
Confidence 55542 46787777643337777887776553
No 156
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=43.24 E-value=18 Score=28.16 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=21.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFL 45 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~ 45 (438)
+.+.|.+.+.++.+.|++.|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 458899999999999999999876
No 157
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=43.13 E-value=65 Score=28.54 Aligned_cols=45 Identities=13% Similarity=0.029 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHH
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVM 101 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~ 101 (438)
++.|+|+++|-|+.. +--.+...|.+.| ++-++-....+.+..+.
T Consensus 2 vI~v~s~KGGvGKTT-~a~~LA~~la~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTT-TAVHLSAYLALQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHH-HHHHHHHHHHTTS-CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHH-HHHHHHHHHHhcC-CEEEEECCCCCCHHHHh
Confidence 677889999988753 2335777788889 99888888777776554
No 158
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=43.12 E-value=93 Score=27.94 Aligned_cols=73 Identities=10% Similarity=0.195 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCc-EEEEEcCCchHHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYD-GVLAVGGDGFFNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d-~IV~vGGDGTv~EVvN 129 (438)
++.||. |...-..+.++....|+..|+.|++.+.. .+....++++++. ..+.+ .|++.||.+-+--++-
T Consensus 23 ~V~Iim----GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~---~~g~~ViIa~AG~aa~LpgvvA 95 (182)
T 1u11_A 23 VVGIIM----GSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAA---ERGLNVIIAGAGGAAHLPGMCA 95 (182)
T ss_dssp SEEEEE----SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTT---TTTCCEEEEEEESSCCHHHHHH
T ss_pred EEEEEE----CcHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHH---hCCCcEEEEecCchhhhHHHHH
Confidence 455554 55555666778899999999999988764 2445556666543 24456 4667899999999999
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
++..
T Consensus 96 ~~t~ 99 (182)
T 1u11_A 96 AWTR 99 (182)
T ss_dssp HHCS
T ss_pred hccC
Confidence 8864
No 159
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=42.51 E-value=16 Score=28.38 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEeecCCChHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNA 43 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~ 43 (438)
++|.|.+.+.++...|++.|++
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5788999999999999999986
No 160
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=42.31 E-value=24 Score=31.72 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCC---C-CCChhhhHH--HHHHHHHhcceeEEEEEeCCCC------h------H-----HHHHHH--hhh
Q 037501 52 PKNLLIFIHPMS---G-KGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAG------Q------A-----FDVMAS--TKN 106 (438)
Q Consensus 52 pk~llvivNP~s---G-~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~------h------a-----~~~~~~--~~~ 106 (438)
+|+++|++--.. . ...+....+ ....+|++++++++++-.+... . . ..+... +.+
T Consensus 5 ~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (224)
T 1u9c_A 5 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSK 84 (224)
T ss_dssp CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCG
T ss_pred CceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHH
Confidence 478888875111 1 112334444 3567899999988876543210 0 1 111110 011
Q ss_pred hhcCCCcEEEEEcCCchH
Q 037501 107 KELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv 124 (438)
.+...||.|++.||.|..
T Consensus 85 ~~~~~~D~livpGG~~~~ 102 (224)
T 1u9c_A 85 DDAHGFDAIFLPGGHGTM 102 (224)
T ss_dssp GGGSSCSEEEECCCTTHH
T ss_pred cChhhCCEEEECCCcchH
Confidence 113479999999998864
No 161
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=41.70 E-value=13 Score=36.44 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.6
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
.+.|.+|++|||||+.-+ +-|.+
T Consensus 93 ~~Id~LvvIGGdgS~~~a-~~L~~ 115 (320)
T 1pfk_A 93 RGIDALVVIGGDGSYMGA-MRLTE 115 (320)
T ss_dssp TTCCEEEEEECHHHHHHH-HHHHH
T ss_pred cCCCEEEEECCCchHHHH-HHHHh
Confidence 578999999999998654 34543
No 162
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.70 E-value=16 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=23.1
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|+..+..
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999998764
No 163
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=41.67 E-value=13 Score=36.42 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
..+++.+. ..+.|.+|++|||||+.-+ +-|.+
T Consensus 83 ~~~~~~l~---~~~Id~LvvIGGdgS~~~a-~~L~~ 114 (319)
T 1zxx_A 83 LAGIEQLK---KHGIDAVVVIGGDGSYHGA-LQLTR 114 (319)
T ss_dssp HHHHHHHH---HTTCCEEEEEECHHHHHHH-HHHHH
T ss_pred HHHHHHHH---HhCCCEEEEECCchHHHHH-HHHHH
Confidence 34444443 3578999999999998643 34543
No 164
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=41.43 E-value=21 Score=29.11 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=23.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.|.|...+++++++|++.|+.+...
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 56999999999999999999998754
No 165
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=41.42 E-value=16 Score=28.34 Aligned_cols=26 Identities=4% Similarity=0.104 Sum_probs=23.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|++.+..
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999998754
No 166
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=41.29 E-value=10 Score=29.07 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEeecCCChHHHHHHHHHHHHH
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAF 44 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~ 44 (438)
+.+.|.+.++++.+.|++.|+++
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhh
Confidence 56889999999999999999875
No 167
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=41.12 E-value=14 Score=31.42 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=30.2
Q ss_pred eeEEEEEEecCCCCCCceEEEEEeecCCChHHHHHHHHHH-HHHhhh
Q 037501 2 YRFTVHSFQKSKTQPNLWVLAVYTFGHKDLPTCEMWVNRV-NAFLNM 47 (438)
Q Consensus 2 ~~~~~~~~~~~~~~~~~w~~~~~~f~~~~~~~~~~w~~~l-~~~~~~ 47 (438)
|+|.|+.--++.- -...++|.|++.+.++...|++.| +..++.
T Consensus 76 ~~F~l~~~d~r~v---~~~h~~y~LsA~t~ee~~~Wi~s~~ra~v~p 119 (125)
T 1dyn_A 76 HIFALFNTEQRNV---YKDYRQLELACETQEEVDSWKASFLRAGVYP 119 (125)
T ss_dssp EEEEEEETTSSCS---STTCSSEEEEESSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCccc---cccceEEEEeCCCHHHHHHHHHHHHhCccCc
Confidence 7888887432200 011267999999999999999999 555664
No 168
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=40.95 E-value=15 Score=39.90 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=38.4
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+++.||+.+.-|- -......+...|+++|++++++-.+. +...+ ..+.+.+...||+||+.||-
T Consensus 530 ~kVaIL~a~~dGf--e~~E~~~~~~~L~~aG~~V~vVs~~~-g~~vD--~t~~~~~s~~fDAVvlPGG~ 593 (688)
T 2iuf_A 530 LKVGLLASVNKPA--SIAQGAKLQVALSSVGVDVVVVAERX-ANNVD--ETYSASDAVQFDAVVVADGA 593 (688)
T ss_dssp CEEEEECCTTCHH--HHHHHHHHHHHHGGGTCEEEEEESSC-CTTCC--EESTTCCGGGCSEEEECTTC
T ss_pred CEEEEEecCCCCC--cHHHHHHHHHHHHHCCCEEEEEeccC-Ccccc--cchhcCCccccCeEEecCCC
Confidence 5788887642221 11123368899999999998886653 32001 01111133579999999994
No 169
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=40.88 E-value=61 Score=28.41 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=43.0
Q ss_pred cEEEEEE-cCCCCCCChhhhHHHHHHH-HHhcceeEEEEEeCCC------------ChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 53 KNLLIFI-HPMSGKGSGRRTWETVAPI-FVRAKVNTKVIVTQRA------------GQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 53 k~llviv-NP~sG~g~~~~~~~~v~~~-l~~agi~~~v~~T~~~------------~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
+++++|+ .|.. .+...++.+.+... |..+|.+++++.-... .+..++.+. +..+|+||++
T Consensus 3 mkilii~gS~r~-~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~-----i~~aD~ii~~ 76 (197)
T 2vzf_A 3 YSIVAISGSPSR-NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDA-----TCNADGLIVA 76 (197)
T ss_dssp EEEEEEECCSST-TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHH-----HHHCSEEEEE
T ss_pred ceEEEEECCCCC-CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHH-----HHHCCEEEEE
Confidence 4666665 3332 35566777778887 8888988887764332 133333333 3468888876
Q ss_pred cC--CchHHHHHHhhhh
Q 037501 119 GG--DGFFNEILNGFLS 133 (438)
Q Consensus 119 GG--DGTv~EVvNGL~~ 133 (438)
.- -|.+.-.+..++.
T Consensus 77 sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 77 TPIYKASYTGLLKAFLD 93 (197)
T ss_dssp EECBTTBCCHHHHHHHT
T ss_pred eCccCCCCCHHHHHHHH
Confidence 41 2334445555544
No 170
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=40.61 E-value=18 Score=30.05 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.|.|.+.++++.+.|++.|+..+.
T Consensus 96 r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 96 QRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998875
No 171
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=40.54 E-value=43 Score=29.20 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHh-cceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC--CchHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVR-AKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG--DGFFNEIL 128 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~-agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG--DGTv~EVv 128 (438)
+++++||+-- ..|...++.+.+...+.. .|++++++...... . . ++..+|+||++.- .|.+...+
T Consensus 4 M~kiliiy~S--~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~-~----~-----~l~~aD~ii~gsP~y~g~~~~~l 71 (188)
T 2ark_A 4 MGKVLVIYDT--RTGNTKKMAELVAEGARSLEGTEVRLKHVDEAT-K----E-----DVLWADGLAVGSPTNMGLVSWKM 71 (188)
T ss_dssp CEEEEEEECC--SSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCC-H----H-----HHHHCSEEEEEEECBTTBCCHHH
T ss_pred CCEEEEEEEC--CCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC-H----H-----HHHhCCEEEEEeCccCCcCCHHH
Confidence 4677777743 456677777888888888 88888877544322 1 1 1235788777642 23444444
Q ss_pred Hhhhh
Q 037501 129 NGFLS 133 (438)
Q Consensus 129 NGL~~ 133 (438)
..++.
T Consensus 72 k~fld 76 (188)
T 2ark_A 72 KRFFD 76 (188)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 172
>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1
Probab=40.37 E-value=25 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHh
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRA-GQAFDVMAST 104 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~ 104 (438)
.+++..+|+++|+.++++.|... ..+.++++.+
T Consensus 2 ~~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~l 35 (152)
T 1wdv_A 2 LEKVEEWIKARGLTWRLLIMQKPTRTVAEAAALL 35 (152)
T ss_dssp -CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHc
Confidence 35788999999999999999887 6677777665
No 173
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=40.34 E-value=68 Score=29.09 Aligned_cols=77 Identities=10% Similarity=-0.033 Sum_probs=43.9
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
+++.|++ |.....-...+++-++..+++.|+++.+..++.. ....++.+.+. ..++|+||+.+.+.. +.+.+.-
T Consensus 3 ~~Ig~i~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~~~~~~~~~ 78 (290)
T 2fn9_A 3 GKMAIVI-STLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAII---AAGYDAIIFNPTDADGSIANVKR 78 (290)
T ss_dssp CEEEEEE-SCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSCTTTTHHHHHH
T ss_pred eEEEEEe-CCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEecCChHHHHHHHHH
Confidence 4555555 4332222233444577888888988876665432 12233444443 267999999987754 3455555
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 79 ~~~ 81 (290)
T 2fn9_A 79 AKE 81 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 174
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=40.14 E-value=38 Score=32.25 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=49.6
Q ss_pred hhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCcEEEE-------
Q 037501 46 NMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYDGVLA------- 117 (438)
Q Consensus 46 ~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d~IV~------- 117 (438)
|.-.++|+.+.+|||=. | . -.+.+..+|+..|+++++..=-...+..+.+++++. .+...+|.+||
T Consensus 36 Y~m~~~~rG~~LIinn~-~--~---D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~ 109 (272)
T 3h11_A 36 YKMKSKPLGICLIIDCI-G--N---ETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG 109 (272)
T ss_dssp CCCCCSSSEEEEEEESS-C--C---CCSHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE
T ss_pred CCCCCCcceEEEEECCc-h--H---HHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC
Confidence 33345778888888843 2 1 124678889999998887754445555555666543 24556776543
Q ss_pred ----EcCCch-----HHHHHHhhh
Q 037501 118 ----VGGDGF-----FNEILNGFL 132 (438)
Q Consensus 118 ----vGGDGT-----v~EVvNGL~ 132 (438)
.|=||. +.++.+-+.
T Consensus 110 ~g~i~g~D~~~~~v~l~~i~~~f~ 133 (272)
T 3h11_A 110 SQSVYGVDQTHSGLPLHHIRRMFM 133 (272)
T ss_dssp TTEECBTSCCSSCEEHHHHHHHHS
T ss_pred CCeEEEEcCCcceEeHHHHHHHhc
Confidence 355664 666666554
No 175
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=39.96 E-value=92 Score=27.56 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCcEEEEEEcCCC---CCCC----hhhhHHH----HHHHH--HhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEE
Q 037501 51 RPKNLLIFIHPMS---GKGS----GRRTWET----VAPIF--VRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLA 117 (438)
Q Consensus 51 rpk~llvivNP~s---G~g~----~~~~~~~----v~~~l--~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~ 117 (438)
-+++++||-=|.- |++. +...++. ++... .+.|++++++.+.+.+...+...++. .+.+|+||+
T Consensus 13 ~~~~IlVlNGPNLNlLG~REP~iYG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~---~~~~dgIII 89 (167)
T 3kip_A 13 LVKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAK---RQGVGFVVI 89 (167)
T ss_dssp CCCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHH---HTTCCEEEE
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhh---hcCccEEEE
Confidence 3567777766763 2222 1222333 44444 45678999999999998888877652 146888885
Q ss_pred EcC
Q 037501 118 VGG 120 (438)
Q Consensus 118 vGG 120 (438)
=-|
T Consensus 90 Npg 92 (167)
T 3kip_A 90 NAG 92 (167)
T ss_dssp ECG
T ss_pred ccc
Confidence 433
No 176
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=39.82 E-value=1e+02 Score=27.04 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeC---CCChHHHHHHHhhhhhcCCCcE-EEEEcCCchHHHHHHhhhhc
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQ---RAGQAFDVMASTKNKELSSYDG-VLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~---~~~ha~~~~~~~~~~~~~~~d~-IV~vGGDGTv~EVvNGL~~~ 134 (438)
|...-..+.++....|+..|+.|++.+.. .+....++++++.+ ..++++ |++.|+.+-+--++-++...
T Consensus 10 gs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~--~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 10 GSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEA--LDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHT--SCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhh--cCCCcEEEEECCchhhhHHHHHhccCC
Confidence 44445566778889999999999988764 23455566665531 124664 66679999999999998654
No 177
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.82 E-value=90 Score=29.20 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++. .-...-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.. .+.+.
T Consensus 62 ~~~~Ig~i~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~-~~~~~ 136 (332)
T 2o20_A 62 RTTTVGVILP-TITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFL---SKQVDGIVYMGSSLD-EKIRT 136 (332)
T ss_dssp CCCEEEEEES-CTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECSSCCC-HHHHH
T ss_pred CCCEEEEEeC-CCCCcHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHH---hCCCCEEEEeCCCCC-HHHHH
Confidence 4556777763 3222222334455778888889888776554322 1223444443 267999999987654 34555
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-|.
T Consensus 137 ~l~ 139 (332)
T 2o20_A 137 SLK 139 (332)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 178
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=39.78 E-value=1e+02 Score=29.03 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=43.0
Q ss_pred EEEEcCCCCC-CChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhc-CCCcEEEEEcCCchHHHHHHhhh
Q 037501 56 LIFIHPMSGK-GSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKEL-SSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 56 lvivNP~sG~-g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~-~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
+.|+.|.... .-...+.+-++..+++.|+++.+..++.... ..+.++.+.. . .++|+||+++-+....+++.-+.
T Consensus 6 Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~--~~~~vDgiIi~~~~~~~~~~~~~~~ 83 (350)
T 3h75_A 6 VVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQ--GRDKPDYLMLVNEQYVAPQILRLSQ 83 (350)
T ss_dssp EEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH--SSSCCSEEEEECCSSHHHHHHHHHT
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHh--cCCCCCEEEEeCchhhHHHHHHHHH
Confidence 4455555432 2223344457778888898888776554211 1233444321 1 48999999974445666776554
Q ss_pred h
Q 037501 133 S 133 (438)
Q Consensus 133 ~ 133 (438)
.
T Consensus 84 ~ 84 (350)
T 3h75_A 84 G 84 (350)
T ss_dssp T
T ss_pred h
Confidence 4
No 179
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=38.96 E-value=32 Score=34.33 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=54.0
Q ss_pred EEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC----CCh
Q 037501 21 LAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR----AGQ 96 (438)
Q Consensus 21 ~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~----~~h 96 (438)
|..+.|.....+....+ +. . . +|++|+..+.+-+ ....+++|...|+ ++++.++.-.. ...
T Consensus 30 p~~i~~G~g~l~~l~~~-------l~--~-g-~r~liVtd~~~~~--~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~ 94 (408)
T 1oj7_A 30 PTRILFGKGAIAGLREQ-------IP--H-D-ARVLITYGGGSVK--KTGVLDQVLDALK--GMDVLEFGGIEPNPAYET 94 (408)
T ss_dssp EEEEEESTTGGGGHHHH-------SC--T-T-CEEEEEECSSHHH--HHSHHHHHHHHTT--TSEEEEECCCCSSCBHHH
T ss_pred CCeEEECCCHHHHHHHH-------Hh--c-C-CEEEEEECCchhh--hccHHHHHHHHhC--CCEEEEeCCcCCCcCHHH
Confidence 56778887665444332 22 1 2 7899998643211 1125678888886 77765442111 122
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
..+.++.+.+ .++|.||++|| |++-.+.-.+..
T Consensus 95 v~~~~~~~~~---~~~D~IIavGG-GsviD~AK~iA~ 127 (408)
T 1oj7_A 95 LMNAVKLVRE---QKVTFLLAVGG-GSVLDGTKFIAA 127 (408)
T ss_dssp HHHHHHHHHH---HTCCEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCEEEEeCC-chHHHHHHHHHH
Confidence 3334443322 46799999998 777777665443
No 180
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=38.88 E-value=61 Score=29.01 Aligned_cols=73 Identities=8% Similarity=0.029 Sum_probs=43.7
Q ss_pred EcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHH---HHHHHhhhhhcCC-CcEEEEEcCCc-hHHHHHHhhhh
Q 037501 59 IHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAF---DVMASTKNKELSS-YDGVLAVGGDG-FFNEILNGFLS 133 (438)
Q Consensus 59 vNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~---~~~~~~~~~~~~~-~d~IV~vGGDG-Tv~EVvNGL~~ 133 (438)
+-|.....-...+++.++..+++.|+++.+..+....+.. +.++.+. ..+ +|+||+.+-|. ...+.+.-+..
T Consensus 6 i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~vdgii~~~~~~~~~~~~~~~~~~ 82 (276)
T 3ksm_A 6 VLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHL---SQAPPDALILAPNSAEDLTPSVAQYRA 82 (276)
T ss_dssp ECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHH---HHSCCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHH---HhCCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 3444433333445556888888889888776643333332 3444443 246 99999999764 45566766654
Q ss_pred c
Q 037501 134 S 134 (438)
Q Consensus 134 ~ 134 (438)
.
T Consensus 83 ~ 83 (276)
T 3ksm_A 83 R 83 (276)
T ss_dssp T
T ss_pred C
Confidence 3
No 181
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=38.82 E-value=48 Score=32.36 Aligned_cols=73 Identities=7% Similarity=0.056 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCCCCC-ChhhhHHHHHHHHHhcceeEEEEEeCC------CChHHHHHHHhhhh-hcCCCcEEEE-EcCCc
Q 037501 52 PKNLLIFIHPMSGKG-SGRRTWETVAPIFVRAKVNTKVIVTQR------AGQAFDVMASTKNK-ELSSYDGVLA-VGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g-~~~~~~~~v~~~l~~agi~~~v~~T~~------~~ha~~~~~~~~~~-~~~~~d~IV~-vGGDG 122 (438)
+-.-.-||.|.++-. .....+++....|+..|+++.+-.+-. +++.++=++++.+. .....|+|+| .||+|
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYN 90 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 345688899998753 123556777788999998876543322 23333333333221 1246777766 69999
Q ss_pred hH
Q 037501 123 FF 124 (438)
Q Consensus 123 Tv 124 (438)
+.
T Consensus 91 ~~ 92 (331)
T 4e5s_A 91 SN 92 (331)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 182
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.80 E-value=22 Score=28.29 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.+.|.+.+.++...|++.|+..+.
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 96 RTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998864
No 183
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=38.79 E-value=11 Score=37.38 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHHhhhc-cCCCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCC-----------
Q 037501 29 KDLPTCEMWVNRVNAFLNME-VGRPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRA----------- 94 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~-~~rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~----------- 94 (438)
........+...|.+.+... ...++++.|++-| +...++ .....|+++|++++++-.+..
T Consensus 181 ~g~~~~~d~al~li~~l~g~~~~~~~ki~ill~d------g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~ 254 (396)
T 3uk7_A 181 ATYEGHPEFIQLFVKALGGKITGANKRILFLCGD------YMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHD 254 (396)
T ss_dssp SSGGGHHHHHHHHHHHTTCEEECCCCEEEEECCT------TEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEE
T ss_pred cCcccHHHHHHHHHHHHhccchhccceEEEEecC------CCcchhHHHHHHHHHHCCCEEEEECCCCCCCccccccccc
Confidence 34444566666666666543 3566788888763 233445 466788999998877643211
Q ss_pred -----------ChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 95 -----------GQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 95 -----------~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
++....-..+.+.+...||.||+.||.|.-
T Consensus 255 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~livpGg~~~~ 295 (396)
T 3uk7_A 255 FEGDQTYSEKPGHTFALTTNFDDLVSSSYDALVIPGGRAPE 295 (396)
T ss_dssp CCSSSSCEEEECCCEECCSCGGGCCGGGCSEEEECCBSHHH
T ss_pred ccccchhhhcCCceeeccCCHHHCCcccCCEEEECCCcchh
Confidence 111100011211123579999999999854
No 184
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=38.75 E-value=1e+02 Score=29.80 Aligned_cols=62 Identities=10% Similarity=0.113 Sum_probs=39.0
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
+.+++++++ .|..|...++.+.+...+...+++++++.-... ...++... +..+|+||++.-
T Consensus 255 ~~~k~~i~~--~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~-----l~~~d~iiigsP 316 (404)
T 2ohh_A 255 VDERVTVIY--DTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED-DRSEIVKD-----ILESGAIALGAP 316 (404)
T ss_dssp CCSEEEEEE--CCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS-CHHHHHHH-----HHTCSEEEEECC
T ss_pred CCCcEEEEE--ECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC-CHHHHHHH-----HHHCCEEEEECc
Confidence 345666666 344566777778888888888887776654332 23344333 356888887743
No 185
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.53 E-value=82 Score=29.41 Aligned_cols=79 Identities=4% Similarity=-0.071 Sum_probs=43.4
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNE 126 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~E 126 (438)
++.+++.|++. . ...-...+.+.++..+++. |+++.+..+... ....+.++.+. ..++|+||+.+.+.. +.+
T Consensus 4 ~~~~~Igvi~~-~-~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~ 78 (325)
T 2x7x_A 4 TPHFRIGVAQC-S-DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFM---DEGVDLLIISANEAAPMTP 78 (325)
T ss_dssp --CCEEEEEES-C-CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSSHHHHHH
T ss_pred CCCeEEEEEec-C-CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCHHHHHH
Confidence 35567777664 3 2111122334466677777 887776655431 22233444443 267999999988764 345
Q ss_pred HHHhhhh
Q 037501 127 ILNGFLS 133 (438)
Q Consensus 127 VvNGL~~ 133 (438)
.+.-+..
T Consensus 79 ~~~~~~~ 85 (325)
T 2x7x_A 79 IVEEAYQ 85 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 186
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=38.43 E-value=2.1e+02 Score=26.03 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhc-
Q 037501 32 PTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKEL- 109 (438)
Q Consensus 32 ~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~- 109 (438)
+....-++.|.+. ..+++.+|..|.. .......++-.+..|+++|+.+.++.+.. ...+.+.++++.....
T Consensus 117 ~~~~~a~~~L~~~------G~~~I~~i~~~~~-~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (295)
T 3hcw_A 117 LASENLTRHVIEQ------GVDELIFITEKGN-FEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKD 189 (295)
T ss_dssp HHHHHHHHHHHHH------CCSEEEEEEESSC-CHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc------CCccEEEEcCCcc-chhHHHHHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhccc
Confidence 3444555555442 4578888876543 22233344557788889999887665543 2344555555432111
Q ss_pred -CCCcEEEEEcCCchHHHHHHhhhhccc
Q 037501 110 -SSYDGVLAVGGDGFFNEILNGFLSSRY 136 (438)
Q Consensus 110 -~~~d~IV~vGGDGTv~EVvNGL~~~~~ 136 (438)
...|+|+ +..|.+--.+++.|.....
T Consensus 190 ~~~~~ai~-~~~d~~A~g~~~al~~~g~ 216 (295)
T 3hcw_A 190 PNIKQAII-SLDAMLHLAILSVLYELNI 216 (295)
T ss_dssp TTSCEEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEE-ECChHHHHHHHHHHHHcCC
Confidence 2567766 5788887888888876643
No 187
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=38.30 E-value=1.1e+02 Score=27.59 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=49.1
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF-FNEI 127 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EV 127 (438)
.+.+++.|++.-. ...-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.|.. ..+.
T Consensus 3 ~~~~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~ 78 (291)
T 3l49_A 3 LEGKTIGITAIGT-DHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI---AQKPDAIIEQLGNLDVLNPW 78 (291)
T ss_dssp CTTCEEEEEESCC-SSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HHCCSEEEEESSCHHHHHHH
T ss_pred CCCcEEEEEeCCC-CChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhhhHHH
Confidence 3556777776532 22222344556888888899888777665322 2233444443 257999999999853 5566
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
+.-+...
T Consensus 79 ~~~~~~~ 85 (291)
T 3l49_A 79 LQKINDA 85 (291)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 6666543
No 188
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.13 E-value=67 Score=30.08 Aligned_cols=80 Identities=5% Similarity=-0.136 Sum_probs=45.5
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCC--CcEEEEEcCCch-HH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSS--YDGVLAVGGDGF-FN 125 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~--~d~IV~vGGDGT-v~ 125 (438)
++.+++.|++. .....-...+.+.++..+++.|+++.+..+... ....++++.+.. .+ +|+||+.+.+.. +.
T Consensus 3 ~~s~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~---~~~~vdgiIi~~~~~~~~~ 78 (332)
T 2rjo_A 3 LGQTTLACSFR-SLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQ---KTGGNLVLNVDPNDSADAR 78 (332)
T ss_dssp CCCCEEEEEES-CTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHH---HTTTCEEEEECCSSHHHHH
T ss_pred CCccEEEEEec-CCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHH---CCCCCCEEEEeCCCHHHHH
Confidence 35567777764 222211223344577788888988877665432 122234444432 46 999999988764 33
Q ss_pred HHHHhhhh
Q 037501 126 EILNGFLS 133 (438)
Q Consensus 126 EVvNGL~~ 133 (438)
+.+.-+..
T Consensus 79 ~~~~~~~~ 86 (332)
T 2rjo_A 79 VIVEACSK 86 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 189
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=38.05 E-value=23 Score=29.60 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=23.0
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.|.|.+.+.++...|++.|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 100 SSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999875
No 190
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=38.04 E-value=56 Score=29.83 Aligned_cols=78 Identities=5% Similarity=-0.215 Sum_probs=44.8
Q ss_pred CCcEEEEEEcC-CC--CCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHP-MS--GKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP-~s--G~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
+.+++.|++.- .. ...-...+.+.++..+++.|+++.+..+.. .....++.+.+. ..++|+||+++.+.+ .+
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~-~~ 78 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIR---SGNVDGFVLSSINYN-DP 78 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHH---TTCCSEEEECSCCTT-CH
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHH---cCCCCEEEEeecCCC-cH
Confidence 45566666632 22 222223445567888888898776654432 222344555553 367999999987754 24
Q ss_pred HHHhhh
Q 037501 127 ILNGFL 132 (438)
Q Consensus 127 VvNGL~ 132 (438)
.+.-+.
T Consensus 79 ~~~~l~ 84 (287)
T 3bbl_A 79 RVQFLL 84 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 191
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=37.63 E-value=94 Score=28.12 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=48.0
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchH-HHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFF-NEI 127 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv-~EV 127 (438)
++.+++.|++.- ....-...+++.++..+++.|+++.+..+.... ...+.++.+. ..++|+||+.+.|... .+.
T Consensus 6 ~~~~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 6 PKRNIVGFTIVN-DKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV---HLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp ---CEEEEEESC-SCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH---HTTCSEEEEECSCTTTTHHH
T ss_pred CCCcEEEEEEec-CCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH---HcCCCEEEEecCChHHHHHH
Confidence 355677777643 222222344455788888899988877665322 2224444443 3689999999887653 466
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
+..+...
T Consensus 82 ~~~~~~~ 88 (293)
T 3l6u_A 82 IEEAKKA 88 (293)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6666543
No 192
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.57 E-value=61 Score=29.73 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChH---HHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQA---FDVMASTKNKELSSYDGVLAVGGDGF-FNEILN 129 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha---~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvN 129 (438)
++.| +.|.....-...+.+.++..+++.|+++.+..++..++. .+.++.+. ..++|+||+.+-|.. +.+.+.
T Consensus 5 ~Igv-i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 5 KYYL-ITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESAL---ATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp EEEE-ECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHH---HTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEE-EecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHH---HcCCCEEEEeCCCHHHHHHHHH
Confidence 3444 444443222233445577888888988877665522222 23444443 367999999988765 345555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-+..
T Consensus 81 ~~~~ 84 (297)
T 3rot_A 81 RANK 84 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 193
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=37.54 E-value=77 Score=30.08 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=44.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++ |.....-...+.+.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.. .+.+.
T Consensus 65 ~s~~Igvi~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~-~~~~~ 139 (348)
T 3bil_A 65 RSNTIGVIV-PSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLT---SHGVDGIICVPNEEC-ANQLE 139 (348)
T ss_dssp ---CEEEEE-SCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH---HTTCSCEEECCCGGG-HHHHH
T ss_pred CCCEEEEEe-CCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEeCCCCC-hHHHH
Confidence 445566666 43222112234445778888899988776664321 2233444443 267999999998766 45665
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-|..
T Consensus 140 ~l~~ 143 (348)
T 3bil_A 140 DLQK 143 (348)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 194
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=37.14 E-value=1.6e+02 Score=27.43 Aligned_cols=70 Identities=10% Similarity=-0.029 Sum_probs=41.2
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
++.+.+.|++. .....-...+++.++..+++.|+++.+..++... ...++.+.+. ..++|+||+++.+.+
T Consensus 56 ~~~~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 56 NHTKSIGLLAT-SSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA---QKRVDGLLVMCSEYP 126 (340)
T ss_dssp TCCSEEEEEES-CSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSCCC
T ss_pred CCCCEEEEEeC-CCCChHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---cCCCCEEEEeCCCCC
Confidence 45567777763 3322222334455778888889887766554321 1223444443 267999999987754
No 195
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=37.09 E-value=87 Score=28.82 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=48.1
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
++.+.+.|++.- ....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.+-.+.+
T Consensus 13 ~~s~~Igvi~~~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~~~~~~ 88 (303)
T 3kke_A 13 SRSGTIGLIVPD-VNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVS---EGRVDGVLLQRREDFDDDML 88 (303)
T ss_dssp ----CEEEEESC-TTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHH---SCSSSEEEECCCTTCCHHHH
T ss_pred CCCCEEEEEeCC-CcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---hCCCcEEEEecCCCCcHHHH
Confidence 345667777643 333333455566888899999998877766432 2334555543 36899999999887632255
Q ss_pred Hhhhh
Q 037501 129 NGFLS 133 (438)
Q Consensus 129 NGL~~ 133 (438)
.-+..
T Consensus 89 ~~l~~ 93 (303)
T 3kke_A 89 AAVLE 93 (303)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 55543
No 196
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=36.90 E-value=46 Score=27.63 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=35.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
++++|++ .|..|.++++.+.|...|...+++++++.- . .. .++..+|.||++.
T Consensus 2 ~ki~I~Y--~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~--~--------~~--~~l~~~d~vi~g~ 54 (147)
T 2hna_A 2 ADITLIS--GSTLGGAEYVAEHLAEKLEEAGFTTETLHG--P--------LL--EDLPASGIWLVIS 54 (147)
T ss_dssp CSEEEEC--CTTSCCCHHHHHHHHHHHHHTTCCEEEECC--T--------TS--CSSCSEEEEEEEC
T ss_pred CeEEEEE--ECCchHHHHHHHHHHHHHHHCCCceEEecC--C--------CH--HHcccCCeEEEEE
Confidence 4677777 455677788888999999888887765521 1 11 2456788777764
No 197
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=36.38 E-value=26 Score=33.14 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=32.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
.+|++|++ .|.. -..-...+.+.|+..+++++++.+..... . ..++++||+||..
T Consensus 3 ~m~~vLiV----~g~~-~~~~a~~l~~aL~~~g~~V~~i~~~~~~~------~--~~~L~~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYC----GDTS-LETAAGYLAGLMTSWQWEFDYIPSHVGLD------V--GELLAKQDLVILS 57 (259)
T ss_dssp ---CEEEE----ESSC-TTTTHHHHHHHHHHTTCCCEEECTTSCBC------S--SHHHHTCSEEEEE
T ss_pred CCceEEEE----CCCC-chhHHHHHHHHHHhCCceEEEeccccccc------C--hhHHhcCCEEEEc
Confidence 45778887 2321 12223468888999999998876554321 0 0135689999887
No 198
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=35.96 E-value=65 Score=25.87 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 55 LLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 55 llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
++|++ .|..|..+++.+.+...+...|++++++...... . . ++..+|.||++.
T Consensus 2 i~iiy--~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~-~----~-----~l~~~d~vi~g~ 54 (137)
T 2fz5_A 2 VEIVY--WSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN-V----D-----DVASKDVILLGC 54 (137)
T ss_dssp EEEEE--CCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC-H----H-----HHHTCSEEEEEC
T ss_pred EEEEE--ECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC-H----H-----HHhcCCEEEEEc
Confidence 45555 3455677788888999998889888876543321 1 1 234689888764
No 199
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=35.86 E-value=2.9e+02 Score=26.43 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhh
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKE 108 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~ 108 (438)
.+.+..+...+++..+.. -+|.-+-|=+++.+ ....+..+.+..+.++.|+++-.+.|-+...-.++-..+....
T Consensus 33 k~~~~~~~l~~~~~~l~~---l~p~fvsVT~gagg--~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~ 107 (304)
T 3fst_A 33 RTSEMEQTLWNSIDRLSS---LKPKFVSVTYGANS--GERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYW 107 (304)
T ss_dssp CSHHHHHHHHHHHHHHHT---TCCSEEEECCCTTS--SCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhc---CCCCEEEEeeCCCC--cchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHH
Confidence 444444444445544431 24444344444332 2223344545566667899999999987655555544443333
Q ss_pred cCCCcEEEEEcCCch
Q 037501 109 LSSYDGVLAVGGDGF 123 (438)
Q Consensus 109 ~~~~d~IV~vGGDGT 123 (438)
..+.+-|+++.||-.
T Consensus 108 ~~GI~nILaLrGDpp 122 (304)
T 3fst_A 108 NNGIRHIVALRGDLP 122 (304)
T ss_dssp HTTCCEEEEECCCCC
T ss_pred HCCCCEEEEecCCCC
Confidence 467899999999953
No 200
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=35.62 E-value=60 Score=28.07 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=25.2
Q ss_pred cEEEEEE-cCCCCCCChhhhHHHHHHHHHhcc--eeEEEEEe
Q 037501 53 KNLLIFI-HPMSGKGSGRRTWETVAPIFVRAK--VNTKVIVT 91 (438)
Q Consensus 53 k~llviv-NP~sG~g~~~~~~~~v~~~l~~ag--i~~~v~~T 91 (438)
+++++|+ .|...++...++.+.+...++.+| .+++++..
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 4555554 565323566677778888888765 77776654
No 201
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=35.58 E-value=1.4e+02 Score=24.80 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
..+.|++++..- ...+|++|.-=+++.|+.+++..-....++.+++.+++. .+.--+=|.+..+||+
T Consensus 6 PaI~i~~~~~~~---~~~~l~~vl~GIEEEGip~~v~~~~~~~d~~~lA~~AA~--~S~lgVGIGi~~~G~~ 72 (117)
T 1nbw_B 6 PGVRLFYDPRGH---HAGAINELCWGLEEQGVPCQTITYDGGGDAAALGALAAR--SSPLRVGIGLSASGEI 72 (117)
T ss_dssp CCEEEEECTTSC---CHHHHHHHHHHHHHTTCCEEEEECTTCCCHHHHHHHHHH--HCTTSEEEEECTTSEE
T ss_pred CEEEEEeCCCCC---CHHHHHHHHhhhhhcCCCeEEEEeCCCCCHHHHHHHHHH--hCCCceEEEECCCCCE
Confidence 347777765443 346788888888999999998665555788899888764 4566667788888864
No 202
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=35.23 E-value=54 Score=31.52 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=39.1
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcce-eEEEEEeCCCChH--HHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV-NTKVIVTQRAGQA--FDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi-~~~v~~T~~~~ha--~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
++++|| |.+.. ......+.....|+..|+ +++++.+....++ .++++.+ ...|+|++.|||=+
T Consensus 57 ~~I~~I--ptAs~-~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l-----~~ad~I~v~GGnt~ 122 (291)
T 3en0_A 57 AIIGII--PSASR-EPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFV-----EQCTGIFMTGGDQL 122 (291)
T ss_dssp CEEEEE--CTTCS-SHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHH-----HHCSEEEECCSCHH
T ss_pred CeEEEE--eCCCC-ChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHH-----hcCCEEEECCCCHH
Confidence 455554 55543 233445678889999998 6776666443322 2334433 35799999999974
No 203
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.12 E-value=89 Score=28.49 Aligned_cols=77 Identities=10% Similarity=0.069 Sum_probs=43.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchH-HHHHHhh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFF-NEILNGF 131 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv-~EVvNGL 131 (438)
.++.|++. ....--...+.+-++..+++.|+++.+..+.......+.++.+. ..++|+||+.+-|... .+.+.-+
T Consensus 3 ~~Ig~i~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVK-QPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA---ASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEES-CTTSHHHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH---HTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeC-CCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCchhhHHHHHHH
Confidence 45555554 32222223344457778888898876665532222233444443 3579999999988753 4455555
Q ss_pred hh
Q 037501 132 LS 133 (438)
Q Consensus 132 ~~ 133 (438)
..
T Consensus 79 ~~ 80 (306)
T 8abp_A 79 RG 80 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 204
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=35.09 E-value=30 Score=29.78 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=41.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEIL 128 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVv 128 (438)
+++++|++- |..|.++++.+.|...|...+++++++.-.... ..++..+|.||++. |+|.+...+
T Consensus 9 ~~ki~I~Y~--S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~----------~~~l~~~d~ii~g~pt~g~G~~p~~~ 76 (167)
T 1ykg_A 9 MPGITIISA--SQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK----------FKQIASEKLLIVVTSTQGEGEPPEEA 76 (167)
T ss_dssp ---CEEEEE--CSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCC----------GGGGGGCSEEEEEEECBGGGBCCGGG
T ss_pred CCeEEEEEE--CCchHHHHHHHHHHHHHHHCCCceEEeehhhCC----------HHHhccCCeEEEEEcccCCCcCChhH
Confidence 457888885 445677788888998888888887766433211 11345688777654 566555444
Q ss_pred Hhhh
Q 037501 129 NGFL 132 (438)
Q Consensus 129 NGL~ 132 (438)
..++
T Consensus 77 ~~f~ 80 (167)
T 1ykg_A 77 VALH 80 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 205
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=34.92 E-value=18 Score=32.58 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=38.4
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCChHH-----HHH--HHhhhhhcCCCcEEEEEcC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAGQAF-----DVM--ASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~ha~-----~~~--~~~~~~~~~~~d~IV~vGG 120 (438)
..+|+++|++-| +...++ .....|+.+|++++++-.+..+... .+. ..+.+.+...||.|++.||
T Consensus 7 ~m~~~v~ill~~------g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG 80 (208)
T 3ot1_A 7 GMSKRILVPVAH------GSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGG 80 (208)
T ss_dssp --CCEEEEEECT------TCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCC
T ss_pred ccCCeEEEEECC------CCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCC
Confidence 357889999875 223344 4667899999988877554211100 000 0011111247999999999
Q ss_pred Cc
Q 037501 121 DG 122 (438)
Q Consensus 121 DG 122 (438)
.+
T Consensus 81 ~~ 82 (208)
T 3ot1_A 81 VG 82 (208)
T ss_dssp HH
T ss_pred ch
Confidence 75
No 206
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=34.79 E-value=47 Score=35.95 Aligned_cols=63 Identities=11% Similarity=0.170 Sum_probs=38.4
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
||+.||+.. |. --...+..+...|+++|+.++++-++.. +..+ ..+...+...||+||+.||-
T Consensus 538 rKVaILvad--G~-fE~~El~~p~~aL~~aGa~V~vVsp~~g-~GvD--~t~~~~~s~~fDAVvlPGG~ 600 (688)
T 3ej6_A 538 LRVGVLSTT--KG-GSLDKAKALKEQLEKDGLKVTVIAEYLA-SGVD--QTYSAADATAFDAVVVAEGA 600 (688)
T ss_dssp CEEEEECCS--SS-SHHHHHHHHHHHHHHTTCEEEEEESSCC-TTCC--EETTTCCGGGCSEEEECTTC
T ss_pred CEEEEEccC--CC-ccHHHHHHHHHHHHHCCCEEEEEeCCCC-CCcc--cCcccCChhcCcEEEECCCc
Confidence 678888763 21 1112234678899999999998866543 3201 11111123569999999994
No 207
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=34.64 E-value=22 Score=31.42 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=37.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCC-----h-----HHHHHHHhhhhhcCCCcEEEEEc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAG-----Q-----AFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~-----h-----a~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+|++.|++-|. ....+ .....|+.++++++++-.+... + +.....++. +...||.|++.|
T Consensus 3 ~~~v~ill~~g------~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~--~~~~~D~livpG 74 (197)
T 2rk3_A 3 SKRALVILAKG------AEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAK--KEGPYDVVVLPG 74 (197)
T ss_dssp CCEEEEEECTT------CCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHH--TTCCCSEEEECC
T ss_pred CCEEEEEECCC------CcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcC--CccCCCEEEECC
Confidence 57888888652 23344 4667899999888776533211 0 000001110 126799999999
Q ss_pred CCch
Q 037501 120 GDGF 123 (438)
Q Consensus 120 GDGT 123 (438)
|.+.
T Consensus 75 G~~~ 78 (197)
T 2rk3_A 75 GNLG 78 (197)
T ss_dssp CHHH
T ss_pred Cchh
Confidence 9854
No 208
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=34.59 E-value=23 Score=28.25 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++...|++.|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 85 RTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999864
No 209
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=34.56 E-value=51 Score=29.82 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=43.2
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
++.+++.|++. .....-...+++.++..+++.|+++.+..+.......++.+.+. ..++|+|| ++.+..
T Consensus 3 ~~~~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLID-DYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSAL---SMRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEES-CTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHH---TTCCSEEE-EESCC-
T ss_pred CccCEEEEEeC-CCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHH---hCCCCEEE-ecCCCC
Confidence 35566777664 33222334555668888899999888877763333344555553 36899999 887765
No 210
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=34.54 E-value=30 Score=29.10 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
..|.|.+.+.+++..|++.|.+.++..
T Consensus 88 ~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 88 NVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999754
No 211
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.34 E-value=2.4e+02 Score=25.34 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC-CCChHHHHHHH--hhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ-RAGQAFDVMAS--TKN 106 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~-~~~ha~~~~~~--~~~ 106 (438)
+.+.....++.|.+. ..+++.+|..|.. .......++-.+..|+++|+++.++... ....+.+.+++ +..
T Consensus 108 ~~~~g~~a~~~L~~~------G~~~I~~i~~~~~-~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (285)
T 3c3k_A 108 DVAASEYVVDQLVKS------GKKRIALINHDLA-YQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLK 180 (285)
T ss_dssp HHHHHHHHHHHHHHT------TCCCEEEEECCTT-SHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHc------CCCeEEEEeCCCc-cccHHHHHHHHHHHHHHcCCCceEeecCCChHHHHHHHHHHHHHc
Confidence 334445555555443 3477887766532 1122233344667788888776533333 34556666666 532
Q ss_pred hhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 107 KELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
.....|+|+| ..|.+--.+++.|....
T Consensus 181 -~~~~~~ai~~-~~d~~A~g~~~al~~~g 207 (285)
T 3c3k_A 181 -SAVKPDAIFA-ISDVLAAGAIQALTESG 207 (285)
T ss_dssp -SSSCCSEEEE-SSHHHHHHHHHHHHHTT
T ss_pred -CCCCCeEEEE-CCHHHHHHHHHHHHHcC
Confidence 1235787775 56888778888886654
No 212
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=34.10 E-value=15 Score=37.42 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=19.1
Q ss_pred HHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 97 AFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 97 a~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
-.++++.+. ..+.|.+|++|||||+.-
T Consensus 93 ~~~~~~~l~---~~~Id~Lv~IGGdgS~~~ 119 (419)
T 3hno_A 93 YERLIEVFK---AHDIGYFFYNGGGDSADT 119 (419)
T ss_dssp HHHHHHHHH---HTTEEEEEEEESHHHHHH
T ss_pred HHHHHHHHH---HcCCCEEEEeCCchHHHH
Confidence 334455543 357899999999999753
No 213
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=33.87 E-value=71 Score=27.59 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=32.2
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.++......|++++.+.|.+.+...+...++. +.+|+||+=-|
T Consensus 33 ~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~----~~~dgiiiNpg 75 (143)
T 1gqo_A 33 DLFQFAEALHIQLTFFQSNHEGDLIDAIHEAE----EQYSGIVLNPG 75 (143)
T ss_dssp HHHHHHHHHTCEEEEEECSCHHHHHHHHHHHT----TTCSEEEEECG
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh----hcCcEEEEccc
Confidence 45555566789999999999998888887763 46888885433
No 214
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=33.87 E-value=76 Score=27.59 Aligned_cols=45 Identities=7% Similarity=-0.021 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 71 TWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 71 ~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
+-+.++......|++++++.|.+.+...+...++. .+++|+||+=
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~---~~~~dgiIIN 73 (149)
T 2uyg_A 29 LEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAH---QEGFLAIVLN 73 (149)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTT---TTTCSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhc---cCCeeEEEEc
Confidence 33456666677899999999999998888887753 2348888853
No 215
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=33.81 E-value=1.7e+02 Score=27.83 Aligned_cols=97 Identities=5% Similarity=-0.084 Sum_probs=53.4
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE--EeC--CCChHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI--VTQ--RAGQAFDVM 101 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~--~T~--~~~ha~~~~ 101 (438)
+...+.......++.|.+. ..|++.+|.... ..+....+.++..|++.|+++... ... ...+....+
T Consensus 120 v~~~~~~~~~~~~~~l~~~------g~~~ia~i~~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~ 190 (385)
T 1pea_A 120 GGPAPNQNSAPLAAYLIRH------YGERVVFIGSDY---IYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAV 190 (385)
T ss_dssp CSCCGGGTHHHHHHHHHTT------TCSEEEEEEESS---HHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHH
T ss_pred ecCChHHhHHHHHHHHHHc------cCcEEEEEeCCC---hHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHH
Confidence 3444544444444444332 237888887531 123344556778888899876432 222 222333445
Q ss_pred HHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 102 ASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 102 ~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+++.+ .+.|+|++.+-|...-.++..+...
T Consensus 191 ~~l~~---~~pdaI~~~~~~~~a~~~~~~~~~~ 220 (385)
T 1pea_A 191 ERIYQ---ARADVVFSTVVGTGTAELYRAIARR 220 (385)
T ss_dssp HHHHH---HTCSEEEEECCTHHHHHHHHHHHHH
T ss_pred HHHHH---CCCCEEEEecccccHHHHHHHHHHc
Confidence 55432 3689888876555566777777554
No 216
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=33.80 E-value=1.1e+02 Score=28.37 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=45.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcc-eeEEEEEeCCCChHHHHHHHhhhhhc-CCCcEEE-EEcCCchHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAK-VNTKVIVTQRAGQAFDVMASTKNKEL-SSYDGVL-AVGGDGFFN 125 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~ag-i~~~v~~T~~~~ha~~~~~~~~~~~~-~~~d~IV-~vGGDGTv~ 125 (438)
+..++++ ++|.....++.+.++.++.++...| ++++++..+. .+..+.+.++.+.-. ...+.+| +.||-.++.
T Consensus 33 ~~d~ViL-v~~~~~~~~~~~A~~~i~~~l~~~~~i~~e~~~vd~-~df~~~v~~i~~~i~~~~~~iivnlsGG~Ril~ 108 (244)
T 2wte_A 33 KEDSLVI-VVPSPIVSGTRAAIESLRAQISRLNYPPPRIYEIEI-TDFNLALSKILDIILTLPEPIISDLTMGMRMIN 108 (244)
T ss_dssp TTSEEEE-EEESSCCHHHHHHHHHHHHHHHHHTCCCEEEEEECC-CSHHHHHHHHHHHHTTSCSSEEEECSSSCHHHH
T ss_pred CCCEEEE-EeCCCcchhHHHHHHHHHHHHHHcCCCceEEEEECC-ccHHHHHHHHHHHHhhcCCcEEEEecCCchHHH
Confidence 3445554 4455445567777888999999886 4888888775 445555544432111 1126766 778888763
No 217
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=33.73 E-value=67 Score=29.60 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=44.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
.++.|+ .|..+..-...+++-++..+++.|+++.+..+... ....++++.+. ..++|+||+.+.+.. +.+.+.-
T Consensus 3 ~~Ig~i-~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~~~~ 78 (306)
T 2vk2_A 3 LTVGFS-QVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFV---AQGVDAIFIAPVVATGWEPVLKE 78 (306)
T ss_dssp CEEEEE-ECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH---HHTCSEEEECCSSSSSCHHHHHH
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChhhHHHHHHH
Confidence 445444 44443222233444577788888988877655432 12233444443 257999999988764 3566665
Q ss_pred hhh
Q 037501 131 FLS 133 (438)
Q Consensus 131 L~~ 133 (438)
+..
T Consensus 79 ~~~ 81 (306)
T 2vk2_A 79 AKD 81 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 218
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=33.51 E-value=67 Score=28.56 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=40.8
Q ss_pred cEEEEEEcCCC---CCCChhhh-----HH----HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 53 KNLLIFIHPMS---GKGSGRRT-----WE----TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 53 k~llvivNP~s---G~g~~~~~-----~~----~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
++++||-=|.- |++. ..+ ++ .++....+.|++++++.+.+.+...+...++. +.+|+||+=-
T Consensus 29 M~IlVLNGPNLNlLG~RE-P~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~----~~~dgIIINP 102 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRRE-PAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA----DAAEPVILNA 102 (172)
T ss_dssp CEEEEEECTTGGGTTTSC-HHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH----HHTCCEEEEC
T ss_pred CEEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh----hcCcEEEECc
Confidence 46777766763 3333 122 23 35555556889999999999998888887753 3478777543
No 219
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=33.43 E-value=34 Score=29.38 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++|.|...+.++.+.|++.|+..+.
T Consensus 89 r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 89 EEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 4588999999999999999999876
No 220
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=33.41 E-value=1.6e+02 Score=28.44 Aligned_cols=76 Identities=8% Similarity=0.030 Sum_probs=46.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC---hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG---QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~---ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
.-|++.+|++- .-| ....+.+...+++.|+.+...+..... +...++.++. ..+.|+||+.+-......+
T Consensus 129 gw~~vaii~d~--~~g--~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik---~~~~~vii~~~~~~~~~~i 201 (389)
T 3o21_A 129 KWEKFVYLYDT--ERG--FSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMD---RRQEKRYLIDCEVERINTI 201 (389)
T ss_dssp TCCEEEEEECS--TTC--SHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHH---TTTCCEEEEESCHHHHHHH
T ss_pred CCCEEEEEEcC--cHH--HHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHH---hCCCeEEEEECCHHHHHHH
Confidence 45889999853 222 344566777888889877655543222 3444555553 3567888887766566666
Q ss_pred HHhhhh
Q 037501 128 LNGFLS 133 (438)
Q Consensus 128 vNGL~~ 133 (438)
+..+..
T Consensus 202 ~~qa~~ 207 (389)
T 3o21_A 202 LEQVVI 207 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 221
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=33.33 E-value=1.3e+02 Score=27.29 Aligned_cols=77 Identities=6% Similarity=-0.127 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcce-eEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV-NTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi-~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvN 129 (438)
+++.|++ |.....-...+++.++..+++.|+ ++.+..+... ....++++.+. ..++|+||+.+.|.+ ..+++.
T Consensus 3 ~~Igvi~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~vdgiii~~~~~~~~~~~~~ 78 (309)
T 2fvy_A 3 TRIGVTI-YKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL---AKGVKALAINLVDPAAAGTVIE 78 (309)
T ss_dssp EEEEEEE-SCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCSSGGGHHHHHH
T ss_pred cEEEEEe-ccCCcHHHHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCcchhHHHHH
Confidence 4555655 332222222344457778888886 7766555431 12233444443 367999999998875 456666
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-+..
T Consensus 79 ~~~~ 82 (309)
T 2fvy_A 79 KARG 82 (309)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 222
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=33.23 E-value=23 Score=34.64 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=17.0
Q ss_pred CCCcEEEEEcCCchHHHHHHhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFL 132 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~ 132 (438)
.+.|.++++|||||+.-+ +-|.
T Consensus 92 ~~Id~L~~IGGdgS~~~a-~~l~ 113 (319)
T 4a3s_A 92 LGIEGLVVIGGDGSYMGA-KKLT 113 (319)
T ss_dssp HTCCEEEEEECTTHHHHH-HHHH
T ss_pred cCCCEEEEeCCcHHHHHH-HHHh
Confidence 468999999999998653 3444
No 223
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=33.14 E-value=1.5e+02 Score=28.63 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
.++++|++ .|..|...++.+.+...+...|++++++.-.. .+..++...+ ..+|+||++.
T Consensus 251 ~~~i~i~y--~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~-~~~~~~~~~~-----~~~d~ii~g~ 310 (398)
T 1ycg_A 251 KAKAVIAY--DTMWLSTEKMAHALMDGLVAGGCEVKLFKLSV-SDRNDVIKEI-----LDARAVLVGS 310 (398)
T ss_dssp CSEEEEEE--CCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGG-SCHHHHHHHH-----HHCSEEEEEC
T ss_pred cCeEEEEE--ECCccHHHHHHHHHHHHHHhcCCeEEEEECCC-CCHHHHHHHH-----HHCCEEEEEC
Confidence 35666666 45566677777778888887787777665432 2344444433 3578777764
No 224
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=32.95 E-value=2e+02 Score=25.76 Aligned_cols=98 Identities=8% Similarity=0.045 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKE 108 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~ 108 (438)
+.+.....++.|.+. ..+++.+|..|.. .......++-.+..|++.++++.++.... ...+.+.++++.+..
T Consensus 102 ~~~~~~~a~~~L~~~------G~~~i~~i~~~~~-~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (277)
T 3cs3_A 102 NRGGATQAIEQFVNV------GSKKVLLLSGPEK-GYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQP 174 (277)
T ss_dssp HHHHHHHHHHHHHHT------TCSCEEEEECCTT-SHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHHHHHHc------CCceEEEEeCCcc-CccHHHHHHHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcC
Confidence 334455555555442 3477877766532 11222333446777888898876433332 233445555543210
Q ss_pred cCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 109 LSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 109 ~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
....|+|+| ..|.+.-.+++.|....
T Consensus 175 ~~~~~ai~~-~~d~~a~g~~~al~~~g 200 (277)
T 3cs3_A 175 QTEPVDVFA-FNDEMAIGVYKYVAETN 200 (277)
T ss_dssp CCSSEEEEE-SSHHHHHHHHHHHTTSS
T ss_pred CCCCcEEEE-cChHHHHHHHHHHHHcC
Confidence 134666664 67888788888886653
No 225
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=32.86 E-value=66 Score=28.76 Aligned_cols=79 Identities=5% Similarity=-0.039 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHh
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNG 130 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNG 130 (438)
.+.+.|++.-.. ..-...+++.++..+++.|+++.+..+... ....++.+.+. ..++|+||+.+.+..-.+.+.-
T Consensus 2 s~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 2 TRTLGFILPDLE-NPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFR---ARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CCEEEEEESCTT-CHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECCCCCSSCCHHHH
T ss_pred ceEEEEEeCCCc-ChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HcCCCEEEEecCccccHHHHHH
Confidence 456667665322 222234455678888889998887766542 12233444443 3689999999988543556665
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
+...
T Consensus 78 ~~~~ 81 (272)
T 3o74_A 78 LQDK 81 (272)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5443
No 226
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.83 E-value=35 Score=30.96 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
++++||=. .+|........+.++..|++.|++++++.... .+..+..+.+ ...|+|++-||+=
T Consensus 28 ~~i~~Ip~-As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l-----~~ad~I~l~GG~~ 90 (206)
T 3l4e_A 28 KTVTFIPT-ASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKL-----RKNDFIYVTGGNT 90 (206)
T ss_dssp CEEEEECG-GGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHH-----HHSSEEEECCSCH
T ss_pred CEEEEECC-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHH-----HhCCEEEECCCCH
Confidence 56665522 23322333445679999999999766543222 2334444433 3478888766553
No 227
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=32.64 E-value=2.4e+02 Score=24.33 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC-CCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS-SYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~-~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
.+...|++.|+++..+.+- +++..++.+.+.+.... ++|.||..||=|. .-|++..++.
T Consensus 32 ~l~~~L~~~G~~v~~~~iv-~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 32 YLRDSAQEAGHHVVDKAIV-KENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD 96 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHCCCeEeEEEEe-CCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHHHHHhc
Confidence 5888999999876543222 33444444444321112 5899999999764 4556555543
No 228
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=32.40 E-value=33 Score=29.95 Aligned_cols=27 Identities=4% Similarity=0.123 Sum_probs=23.4
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhc
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNME 48 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~ 48 (438)
+++.|..++.++.++|++.|+..+...
T Consensus 108 rt~yl~A~s~~E~~eWi~aI~~~i~~n 134 (169)
T 1btk_A 108 GPLYVFSPTEELRKRWIHQLKNVIRYN 134 (169)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHHHC
Confidence 357788999999999999999999753
No 229
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=32.39 E-value=28 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.|.|.+.+.+++..|++.|+..+.
T Consensus 87 r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 87 CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999875
No 230
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=32.28 E-value=57 Score=28.47 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=38.1
Q ss_pred cEEEEEEcCCCC---CCC----hhhhHHH----HHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 53 KNLLIFIHPMSG---KGS----GRRTWET----VAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 53 k~llvivNP~sG---~g~----~~~~~~~----v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
++++|+-=|.-. ++. +...++. ++....+.|++++.+.+.+.+...+...++. +.+|+||+=
T Consensus 5 ~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~----~~~dgiiIN 77 (151)
T 3u80_A 5 TKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAA----DEKTPVVMN 77 (151)
T ss_dssp EEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHH----HHTCCEEEE
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh----hcCcEEEEC
Confidence 466666657642 222 1122333 4444556789999999999998888887753 347777753
No 231
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=32.23 E-value=18 Score=37.64 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=38.1
Q ss_pred cEEEEEEcCCCCCC-----Chhhh-HHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 53 KNLLIFIHPMSGKG-----SGRRT-WETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 53 k~llvivNP~sG~g-----~~~~~-~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
.+++-|.|=+.|=- +-..+ |+.|..++..-| ++.-|.+.. ...++++.+. ..+.|++|++|||||+.
T Consensus 130 ~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GG---TiLGTsR~~~~~~~i~~~l~---~~~Id~LvvIGGdgS~~ 203 (487)
T 2hig_A 130 KRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGG---TILGSSRGPQDPKEMVDTLE---RLGVNILFTVGGDGTQR 203 (487)
T ss_dssp SEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSS---CSSCCCCSCCCHHHHHHHHH---HHTCSEEEEEECHHHHH
T ss_pred cEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCC---CeeccCCCCCCHHHHHHHHH---HcCCCEEEEeCCCchHH
Confidence 36777777655541 11222 455666665544 222233322 2334555553 24789999999999986
Q ss_pred H
Q 037501 126 E 126 (438)
Q Consensus 126 E 126 (438)
-
T Consensus 204 ~ 204 (487)
T 2hig_A 204 G 204 (487)
T ss_dssp H
T ss_pred H
Confidence 3
No 232
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=32.02 E-value=29 Score=28.98 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.9
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.+++..|++.|+..+..
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 95 RIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999863
No 233
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=31.87 E-value=78 Score=28.73 Aligned_cols=68 Identities=7% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-GQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+.+++.|++ |. ...-...+++.++..+++.|+++.+..++.. ....++.+.+. ..++|+||+.+.+.+
T Consensus 7 ~~~~Igvi~-~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 7 RSNIIAFIV-PD-QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFV---SQNVSAIILVPVKSK 75 (288)
T ss_dssp CEEEEEEEE-SS-CCHHHHHHHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHH---HTTEEEEEECCSSSC
T ss_pred CCCEEEEEE-CC-CCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---HcCccEEEEecCCCC
Confidence 445566665 44 2211223344577778888888777655432 12233455443 267999999988764
No 234
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=31.68 E-value=35 Score=26.81 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHh
Q 037501 72 WETVAPIFVRAKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 72 ~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
..+++.+|.+.|++|+.+.-+....+.+.+.++
T Consensus 17 C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~ 49 (92)
T 2lqo_A 17 CLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV 49 (92)
T ss_dssp HHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH
Confidence 457888999999999988766656666666554
No 235
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=31.51 E-value=49 Score=31.46 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCcEEEEEcCCchHHHHH
Q 037501 111 SYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 111 ~~d~IV~vGGDGTv~EVv 128 (438)
..|.+|+.|| +|+.|++
T Consensus 225 ~aDlvI~~gG-~T~~E~~ 241 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEAL 241 (282)
T ss_dssp TEEEEEEESS-HHHHHHH
T ss_pred HCCEEEECCc-HHHHHHH
Confidence 5699999999 9999987
No 236
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=31.43 E-value=12 Score=37.23 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=39.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCC----------------------ChHHHHHHHhhh
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRA----------------------GQAFDVMASTKN 106 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~----------------------~ha~~~~~~~~~ 106 (438)
..||+.|++-| +...++ .....|+++|++++++-.+.. +.....-..+.+
T Consensus 11 ~~~kv~ill~d------g~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 11 NSRTVLILCGD------YMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp CCCEEEEECCT------TEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred cCCeEEEEeCC------CccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 35788888853 334455 467789999998877644321 000000001111
Q ss_pred hhcCCCcEEEEEcCCchH
Q 037501 107 KELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 107 ~~~~~~d~IV~vGGDGTv 124 (438)
.+...||.|++.||.|+-
T Consensus 85 ~~~~~~D~livpGG~~~~ 102 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAPE 102 (396)
T ss_dssp CCGGGCSEEEECCBSHHH
T ss_pred cCcccCCEEEECCCcchh
Confidence 123579999999999864
No 237
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=31.33 E-value=2.1e+02 Score=26.95 Aligned_cols=97 Identities=8% Similarity=-0.045 Sum_probs=53.1
Q ss_pred ecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE--eCCCChHHHHHHH
Q 037501 26 FGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV--TQRAGQAFDVMAS 103 (438)
Q Consensus 26 f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~~~~ha~~~~~~ 103 (438)
+...+.......++.|.+. ..|++.+|.... ..+....+.++..|++.|+++.... .....+....+.+
T Consensus 120 ~~~~~~~~~~~~~~~l~~~------g~~~vaii~~~~---~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~ 190 (375)
T 3i09_A 120 YAYDTMALAKGTGSAVVKQ------GGKTWFFLTADY---AFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQ 190 (375)
T ss_dssp CSCCHHHHHHHHHHHHHHT------TCCEEEEEEESS---HHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHH
T ss_pred eeCChHHHHHHHHHHHHHc------CCceEEEEeccc---HHHHHHHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHH
Confidence 3444444444444444331 457888885321 1234455668888999998764322 2223344455555
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
+.. .+.|+|++.+-....-.++..+...
T Consensus 191 i~~---~~~d~v~~~~~~~~~~~~~~~~~~~ 218 (375)
T 3i09_A 191 AQS---SKAQILGLANAGGDTVNAIKAAKEF 218 (375)
T ss_dssp HHH---TCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred HHh---CCCCEEEEecCchhHHHHHHHHHHc
Confidence 532 5688887765444555666666543
No 238
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.53 E-value=2.7e+02 Score=24.60 Aligned_cols=83 Identities=11% Similarity=-0.002 Sum_probs=48.7
Q ss_pred CCcEEEEEEcCCCC---CCChh-hhHHHHHHHHHhcceeEE---EEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 51 RPKNLLIFIHPMSG---KGSGR-RTWETVAPIFVRAKVNTK---VIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 51 rpk~llvivNP~sG---~g~~~-~~~~~v~~~l~~agi~~~---v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
..+++.+|..+..+ ..... ..++-.+..|+++|+++. +..... ...+.+.++++.+. ....|+|+ +..|.
T Consensus 113 G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ai~-~~~d~ 190 (276)
T 2h0a_A 113 PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEK-ASPPLNVF-AGADQ 190 (276)
T ss_dssp SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTT-CCSSEEEE-CSSHH
T ss_pred CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhC-CCCCCEEE-ECCcH
Confidence 35688887766412 23334 444557778888887653 333332 33445555554321 13467776 67888
Q ss_pred hHHHHHHhhhhcc
Q 037501 123 FFNEILNGFLSSR 135 (438)
Q Consensus 123 Tv~EVvNGL~~~~ 135 (438)
+.-.+++.|....
T Consensus 191 ~a~g~~~al~~~g 203 (276)
T 2h0a_A 191 VALGVLEEAVRLG 203 (276)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcC
Confidence 8888888887653
No 239
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=30.29 E-value=17 Score=31.22 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCChHH-----HHH--HHhhhhhcCCCcEEEEEcCCc
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAGQAF-----DVM--ASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~ha~-----~~~--~~~~~~~~~~~d~IV~vGGDG 122 (438)
.+++.|++-|. ...++ .....|+.++++++++-.+. +... .+. ..+.+.+...||.|++.||.|
T Consensus 2 ~~ki~il~~~g------~~~~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 74 (168)
T 3l18_A 2 SMKVLFLSADG------FEDLELIYPLHRIKEEGHEVYVASFQR-GKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA 74 (168)
T ss_dssp CCEEEEECCTT------BCHHHHHHHHHHHHHTTCEEEEEESSS-EEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH
T ss_pred CcEEEEEeCCC------ccHHHHHHHHHHHHHCCCEEEEEECCC-CEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC
Confidence 36788887652 12233 46678888998887664322 1100 000 001111123599999999987
Q ss_pred h
Q 037501 123 F 123 (438)
Q Consensus 123 T 123 (438)
.
T Consensus 75 ~ 75 (168)
T 3l18_A 75 P 75 (168)
T ss_dssp H
T ss_pred H
Confidence 6
No 240
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=30.19 E-value=1.2e+02 Score=26.56 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhh---hcCCCcEEEEEc----CCch--
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNK---ELSSYDGVLAVG----GDGF-- 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~---~~~~~d~IV~vG----GDGT-- 123 (438)
.|+.|++-.+-- .-..+..+-....|.+.|.+++++.--.+-+.--.++.+.+. ..++||+||+.| |+=.
T Consensus 13 ~ri~IV~arfn~-~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hf 91 (157)
T 2i0f_A 13 PHLLIVEARFYD-DLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHF 91 (157)
T ss_dssp CEEEEEEECSSH-HHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTT
T ss_pred cEEEEEEEeCcH-HHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHH
Confidence 567777653321 111233444556777888777776655544443344444321 116799999998 4432
Q ss_pred ---HHHHHHhhhhc
Q 037501 124 ---FNEILNGFLSS 134 (438)
Q Consensus 124 ---v~EVvNGL~~~ 134 (438)
-+|+..||+.-
T Consensus 92 d~Va~~v~~gl~~v 105 (157)
T 2i0f_A 92 DIVSNESCRALTDL 105 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778888764
No 241
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=30.00 E-value=54 Score=27.86 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=36.4
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhc-----------CCCcEEEEEcCCchHHHH
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKEL-----------SSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~-----------~~~d~IV~vGGDGTv~EV 127 (438)
+++..+|++.++.++++.|.....+.+.++.+.- +. ++--.++++-||--|++.
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~-~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~~ 69 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHV-SGKQLAKTVIIKMDGRLAMVVLPASDHITFM 69 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----C-CSSCCEEEEEEEETTEEEEEEEETTCCCCHH
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCC-ChhheEEEEEEEECCeEEEEEECCCCeECHH
Confidence 5789999999999999998877777776654421 11 111256788999988753
No 242
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=29.86 E-value=1.9e+02 Score=26.26 Aligned_cols=98 Identities=8% Similarity=-0.004 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeC-CCChHHHHHHHhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQ-RAGQAFDVMASTK 105 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~-~~~ha~~~~~~~~ 105 (438)
+.+......+.|.+. ..+++.+|..|..+.......++-.+..|+++|+++. +..+. ....+.+.++++.
T Consensus 117 ~~~~g~~a~~~L~~~------G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (289)
T 2fep_A 117 YEQAIYDAVKLLVDK------GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLM 190 (289)
T ss_dssp HHHHHHHHHHHHHHT------TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHC------CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHH
Confidence 344455555555442 3578888876541211222334456777888887653 33332 2334455555553
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
. .....|+|+| ..|.+.-.+++.|....
T Consensus 191 ~-~~~~~~ai~~-~~d~~A~g~~~al~~~G 218 (289)
T 2fep_A 191 S-LDKKPTAILS-ATDEMALGIIHAAQDQG 218 (289)
T ss_dssp T-SSSCCSEEEE-SSHHHHHHHHHHHHHTT
T ss_pred c-CCCCCCEEEE-CCHHHHHHHHHHHHHcC
Confidence 2 1135777775 67888888888887654
No 243
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=29.82 E-value=71 Score=28.47 Aligned_cols=62 Identities=10% Similarity=-0.039 Sum_probs=38.1
Q ss_pred CcEEEEE-EcCCCCC---CChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 52 PKNLLIF-IHPMSGK---GSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 52 pk~llvi-vNP~sG~---g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
.-++||| -+|.... +...++.+.+...++.++.+++++.-....+..++.+.+ ...|+||++
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l-----~~AD~iV~~ 77 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNF-----LWADVVIWQ 77 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHH-----HHCSEEEEE
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHH-----HhCCEEEEE
Confidence 3455555 4888432 233455667778888888888887766555666665554 457888875
No 244
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.75 E-value=2e+02 Score=26.65 Aligned_cols=77 Identities=6% Similarity=-0.127 Sum_probs=45.5
Q ss_pred CCCcEEEEEEcCC-CCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 50 GRPKNLLIFIHPM-SGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 50 ~rpk~llvivNP~-sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
++.+.+.|++.-. -...-...+.+.++..+++.|+++.+..+..... ..++.+.+. ..++|+||+++.+..-.++
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~~~~ 135 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL---DLRCDAIMIYPRFLSVDEI 135 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHH---HTTCSEEEECCSSSCHHHH
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---hCCCCEEEEeCCCCChHHH
Confidence 3556677776531 1222223444567888889998887776554222 223444443 2689999999988775444
Q ss_pred HH
Q 037501 128 LN 129 (438)
Q Consensus 128 vN 129 (438)
..
T Consensus 136 ~~ 137 (338)
T 3dbi_A 136 DD 137 (338)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 245
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=29.67 E-value=94 Score=28.16 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=24.3
Q ss_pred cEEEEEE-cCCCCCCChhhhHHHHHHHHHhc-ceeEEEEE
Q 037501 53 KNLLIFI-HPMSGKGSGRRTWETVAPIFVRA-KVNTKVIV 90 (438)
Q Consensus 53 k~llviv-NP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~ 90 (438)
+++++|+ .|.. .+...++.+.+...++.+ |++++++.
T Consensus 2 mkIliI~gS~r~-~s~T~~la~~i~~~l~~~~g~~v~~~d 40 (242)
T 1sqs_A 2 NKIFIYAGVRNH-NSKTLEYTKRLSSIISSRNNVDISFRT 40 (242)
T ss_dssp CEEEEEECCCCT-TCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred CeEEEEECCCCC-CChHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3565555 4542 355667777788888777 88887764
No 246
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=29.53 E-value=3.4e+02 Score=25.02 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHhhhc------cCCCcEEEEEEcCC-CCCCChhhhHHHHHHHHHhcceeEEEEE--eC---CCChH
Q 037501 30 DLPTCEMWVNRVNAFLNME------VGRPKNLLIFIHPM-SGKGSGRRTWETVAPIFVRAKVNTKVIV--TQ---RAGQA 97 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~------~~rpk~llvivNP~-sG~g~~~~~~~~v~~~l~~agi~~~v~~--T~---~~~ha 97 (438)
+++..++..+.+.+.=|.. .++.+++.|++ |. ....-...+.+.++..+++.|+++.+.. +. .....
T Consensus 15 s~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~-~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~ 93 (342)
T 1jx6_A 15 FPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVY-PGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQ 93 (342)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEE-CCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCccccccCCceEEEEEe-cCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHH
Confidence 4455555555555544421 12233455555 44 2222223444557788888898877663 43 11222
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
.++.+.+. ..++|+||+ .+|.. ..+.+.-+..
T Consensus 94 ~~~i~~l~---~~~vdgiIi-~~~~~~~~~~~~~~~~ 126 (342)
T 1jx6_A 94 SLSLMEAL---KSKSDYLIF-TLDTTRHRKFVEHVLD 126 (342)
T ss_dssp HHHHHHHH---HTTCSEEEE-CCSSSTTHHHHHHHHH
T ss_pred HHHHHHHH---hcCCCEEEE-eCChHhHHHHHHHHHH
Confidence 34445443 257999999 56654 3456665544
No 247
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=29.50 E-value=1.8e+02 Score=26.76 Aligned_cols=78 Identities=8% Similarity=0.016 Sum_probs=46.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHh
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNG 130 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNG 130 (438)
+++.|++. .....--..+.+-++..+++.|+++.+..++.... ..+.++.+. ..++|+||+.+-|.. ..+.+..
T Consensus 4 ~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~---~~~vdgiIi~~~~~~~~~~~~~~ 79 (330)
T 3uug_A 4 GSVGIAMP-TKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMV---TKGVKVLVIASIDGTTLSDVLKQ 79 (330)
T ss_dssp CEEEEEEC-CSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HHTCSEEEECCSSGGGGHHHHHH
T ss_pred cEEEEEeC-CCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHH---HcCCCEEEEEcCCchhHHHHHHH
Confidence 45666554 33332233444568888888998887776553221 223444443 257999999999864 4566666
Q ss_pred hhhc
Q 037501 131 FLSS 134 (438)
Q Consensus 131 L~~~ 134 (438)
+...
T Consensus 80 ~~~~ 83 (330)
T 3uug_A 80 AGEQ 83 (330)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 6543
No 248
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=29.42 E-value=1.1e+02 Score=27.78 Aligned_cols=76 Identities=5% Similarity=0.010 Sum_probs=38.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE-EeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI-VTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEIL 128 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~-~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVv 128 (438)
+.+++.|++ |.....-...+.+.++..+++.|+++.+. .+.. .....++.+.+. ..++|+||+.+.+.+ .+.+
T Consensus 7 ~~~~Ig~i~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI~~~~~~~-~~~~ 81 (290)
T 3clk_A 7 SSNVIAAVV-SSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAI---ERPVMGILLLSIALT-DDNL 81 (290)
T ss_dssp -CCEEEEEC-CCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHH---SSCCSEEEEESCC-----CH
T ss_pred cCCEEEEEe-CCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHH---hcCCCEEEEecccCC-HHHH
Confidence 455666665 43322222344455778888889887765 4432 222233444443 367999999988764 2444
Q ss_pred Hhh
Q 037501 129 NGF 131 (438)
Q Consensus 129 NGL 131 (438)
.-|
T Consensus 82 ~~l 84 (290)
T 3clk_A 82 QLL 84 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 249
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=29.16 E-value=31 Score=32.27 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
.|+++||.|..... ...+.+.|++.|++++++..... +. + ..+++.+|+||+-||-++++
T Consensus 3 ~~~vliiqh~~~e~------~~~i~~~l~~~G~~v~v~~~~~~-~~------~-p~~~~~~d~lIl~GGp~~~~ 62 (250)
T 3m3p_A 3 LKPVMIIQFSASEG------PGHFGDFLAGEHIPFQVLRMDRS-DP------L-PAEIRDCSGLAMMGGPMSAN 62 (250)
T ss_dssp CCCEEEEESSSSCC------CHHHHHHHHHTTCCEEEEEGGGT-CC------C-CSCGGGSSEEEECCCSSCTT
T ss_pred CCeEEEEECCCCCC------HHHHHHHHHHCCCeEEEEeccCC-Cc------C-cCccccCCEEEECCCCCccc
Confidence 46789998753221 23466778899999887653321 10 0 01346799999999988654
No 250
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=29.10 E-value=93 Score=28.14 Aligned_cols=80 Identities=6% Similarity=-0.037 Sum_probs=45.2
Q ss_pred CCCcEEEEEEcCC----CCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh-HHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 50 GRPKNLLIFIHPM----SGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ-AFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 50 ~rpk~llvivNP~----sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h-a~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
++.+++.|++... ....-...+.+.++..+++.|+++.+..+..... ..++.+.+. ..++|+||+++.+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~vdgiIi~~~~~~- 81 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQ---GRQIGGIILLYSREN- 81 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHH---TTCCCEEEESCCBTT-
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHH---cCCCCEEEEeCCCCC-
Confidence 3556666665430 2222233445567888888898776654443221 123334332 368999999988765
Q ss_pred HHHHHhhhh
Q 037501 125 NEILNGFLS 133 (438)
Q Consensus 125 ~EVvNGL~~ 133 (438)
.+.+.-+..
T Consensus 82 ~~~~~~l~~ 90 (292)
T 3k4h_A 82 DRIIQYLHE 90 (292)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 355655544
No 251
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=28.56 E-value=1.1e+02 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=25.2
Q ss_pred cEEEEEE-cCCC-CCCChhhhHHHHHHHHHhcc--eeEEEEEe
Q 037501 53 KNLLIFI-HPMS-GKGSGRRTWETVAPIFVRAK--VNTKVIVT 91 (438)
Q Consensus 53 k~llviv-NP~s-G~g~~~~~~~~v~~~l~~ag--i~~~v~~T 91 (438)
+++++|+ .|.. .++...++.+.+...+++++ .+++++.-
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 3555554 6663 34556667777888888876 78777643
No 252
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=28.54 E-value=1.3e+02 Score=27.73 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=39.9
Q ss_pred EEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC--hHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhhh
Q 037501 58 FIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG--QAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFLS 133 (438)
Q Consensus 58 ivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~--ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~~ 133 (438)
|+-|..+. -...+.+-++..+++.|+++.+..+.... ...+.++.+. ..++|+||+.+.|.. +.+.+.-+..
T Consensus 6 ~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 6 VIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFI---AEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHH---HTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 34455443 22333445777778888877655422222 2223444443 267999999888764 3455655543
No 253
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=28.44 E-value=1.2e+02 Score=27.70 Aligned_cols=48 Identities=6% Similarity=0.062 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhcce---eEEEEE--eCC-CChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 70 RTWETVAPIFVRAKV---NTKVIV--TQR-AGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 70 ~~~~~v~~~l~~agi---~~~v~~--T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
.+.+-++..+.+.|+ ++.+.. |++ .....++++.+. ..++|+||++|.
T Consensus 18 ~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~---~~~vDgII~~~~ 71 (295)
T 3lft_A 18 LIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLV---ANGNDLVVGIAT 71 (295)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHT---TSSCSEEEEESH
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHH---hcCCCEEEECCc
Confidence 344558888999998 766543 332 122334555553 367999999873
No 254
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=28.42 E-value=2.4e+02 Score=26.66 Aligned_cols=78 Identities=8% Similarity=-0.070 Sum_probs=48.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhc--ceeEEEEEe--CCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRA--KVNTKVIVT--QRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~a--gi~~~v~~T--~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..|++.+|.. . ..-+....+.++..|++. |+++..... ....+....+.++.. .+.|+|++.+-+.....
T Consensus 141 g~~~vaii~~-~--~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~---~~~d~v~~~~~~~~~~~ 214 (387)
T 3i45_A 141 PITRWATIAP-N--YEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQ---AEPEGLFNVLFGADLPK 214 (387)
T ss_dssp SCCEEEEECC-S--SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHH---TCCSEEEECCCTTHHHH
T ss_pred CCCeEEEEeC-C--chHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHh---CCCCEEEEcCccHHHHH
Confidence 4578888762 2 223344556678888887 676533322 223455556666542 57899998877777777
Q ss_pred HHHhhhhc
Q 037501 127 ILNGFLSS 134 (438)
Q Consensus 127 VvNGL~~~ 134 (438)
++..+...
T Consensus 215 ~~~~~~~~ 222 (387)
T 3i45_A 215 FVREGRVR 222 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77776554
No 255
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=28.30 E-value=69 Score=28.07 Aligned_cols=46 Identities=7% Similarity=-0.015 Sum_probs=33.7
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
.++......|++++++.|.+.+...+...++. +.+|+||+=-|==|
T Consensus 39 ~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~----~~~dgiIINpgA~T 84 (156)
T 1gtz_A 39 LCVKAAAAHGGTVDFRQSNHEGELVDWIHEAR----LNHCGIVINPAAYS 84 (156)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHH----HHCSEEEEECTTHH
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh----hcCcEEEECchhhc
Confidence 35555566789999999999998888887763 34888886555333
No 256
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=28.22 E-value=57 Score=28.40 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=35.4
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
.+..+|+++|+++..+..- +++ .++.+.+.+....++|.||..||=|. ..|++..++.
T Consensus 31 ~l~~~l~~~G~~v~~~~iv-~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~~~ 93 (164)
T 3pzy_A 31 IITEWLAQQGFSSAQPEVV-ADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVD 93 (164)
T ss_dssp HHHHHHHHTTCEECCCEEE-CSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHCCCEEEEEEEe-CCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHHhc
Confidence 5888999999876432221 233 34444433211147999999999664 6677766543
No 257
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=28.06 E-value=78 Score=31.00 Aligned_cols=77 Identities=6% Similarity=-0.049 Sum_probs=41.1
Q ss_pred CCCcEEEEEEcCC--CCCCChhhhHHHHHHHHHhcc--eeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 50 GRPKNLLIFIHPM--SGKGSGRRTWETVAPIFVRAK--VNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 50 ~rpk~llvivNP~--sG~g~~~~~~~~v~~~l~~ag--i~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
.++.++.+|+ |- .-++--...++-++.+.++.| +++.++.+.... +..+.++++.+ .++|.||+.|.. +
T Consensus 24 ~~~~kIglv~-~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~---~g~d~Ii~~g~~--~ 97 (356)
T 3s99_A 24 EEKLKVGFIY-IGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIAR---AGNKLIFTTSFG--Y 97 (356)
T ss_dssp --CEEEEEEC-SSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHH---TTCSEEEECSGG--G
T ss_pred CCCCEEEEEE-ccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHH---CCCCEEEECCHH--H
Confidence 3456777777 41 111222334555677777777 666555544332 44455666643 689988877532 3
Q ss_pred HHHHHhhh
Q 037501 125 NEILNGFL 132 (438)
Q Consensus 125 ~EVvNGL~ 132 (438)
.+.+.-+.
T Consensus 98 ~~~~~~vA 105 (356)
T 3s99_A 98 MDPTVKVA 105 (356)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 258
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=27.71 E-value=79 Score=27.36 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
+++||-|+ | . +..+...|+++|.++.++. .. .+++.+|+||+-||-++..
T Consensus 2 ~i~vl~~~--g--~----~~~~~~~l~~~G~~~~~~~--~~------------~~~~~~dglil~GG~~~~~ 51 (186)
T 2ywj_A 2 IIGVLAIQ--G--D----VEEHEEAIKKAGYEAKKVK--RV------------EDLEGIDALIIPGGESTAI 51 (186)
T ss_dssp EEEEECSS--S--C----CHHHHHHHHHTTSEEEEEC--SG------------GGGTTCSEEEECCSCHHHH
T ss_pred EEEEEecC--c--c----hHHHHHHHHHCCCEEEEEC--Ch------------HHhccCCEEEECCCCchhh
Confidence 56777663 2 1 3344577888898766542 21 1346789999999988765
No 259
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=27.63 E-value=32 Score=36.29 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCC--CCChhhh-HHHHHHHHHhcceeEEEEEeCC-----CChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 53 KNLLIFIHPMSG--KGSGRRT-WETVAPIFVRAKVNTKVIVTQR-----AGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG--~g~~~~~-~~~v~~~l~~agi~~~v~~T~~-----~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
.+++-|.|=+.| +++-..+ ++.|..++..-|.. +.-|.+ ...-..+++.+. .-+.|++|++|||||+
T Consensus 105 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGst--iLGssR~~~~~~e~~~~~~~~l~---~~~Id~LvvIGGdgS~ 179 (555)
T 2f48_A 105 SKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFD--IVSSGRTKIETEEHYNKALFVAK---ENNLNAIIIIGGDDSN 179 (555)
T ss_dssp CEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSST--TTCCBCCCCCSHHHHHHHHHHHH---HTTCSEEEEEESHHHH
T ss_pred CEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCc--CCCcCCCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCCcHH
Confidence 456666664443 2222222 44566666555521 011111 112234444443 3578999999999997
Q ss_pred HHH
Q 037501 125 NEI 127 (438)
Q Consensus 125 ~EV 127 (438)
.-+
T Consensus 180 ~~A 182 (555)
T 2f48_A 180 TNA 182 (555)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 260
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.58 E-value=93 Score=26.64 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=22.3
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
++|-|.|.+++.++.|+..++-+.+
T Consensus 88 r~y~l~cdsEeqy~~WMaA~rlAsk 112 (137)
T 2ys3_A 88 SEIYLRCQDEQQYARWMAGCRLASK 112 (137)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHHHHhcc
Confidence 6789999999999999999997764
No 261
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.54 E-value=1.8e+02 Score=27.09 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=45.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++.-. ..--...+.+.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++-+.+- +.+.
T Consensus 61 ~~~~Igvi~~~~-~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiIi~~~~~~~-~~~~ 135 (339)
T 3h5o_A 61 KSRTVLVLIPSL-ANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYL---QHRPDGVLITGLSHAE-PFER 135 (339)
T ss_dssp --CEEEEEESCS-TTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---TTCCSEEEEECSCCCT-THHH
T ss_pred CCCEEEEEeCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---cCCCCEEEEeCCCCCH-HHHH
Confidence 445666666433 22233456667888899999988776665422 2233444443 3689999999876543 4444
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-+.
T Consensus 136 ~l~ 138 (339)
T 3h5o_A 136 ILS 138 (339)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 262
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=27.31 E-value=2.4e+02 Score=23.40 Aligned_cols=57 Identities=7% Similarity=-0.134 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHhccee-EEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc-CCchHHHHH
Q 037501 68 GRRTWETVAPIFVRAKVN-TKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG-GDGFFNEIL 128 (438)
Q Consensus 68 ~~~~~~~v~~~l~~agi~-~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG-GDGTv~EVv 128 (438)
+.+.++++...+...+++ ++..+... .-+.++++.+. ..++|.||+-. |-+.+.+.+
T Consensus 79 ~~~~l~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~---~~~~DLIV~G~~g~~~~~~~~ 137 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAKNVEERPIVG-APVDALVNLAD---EEKADLLVVGNVGLSTIAGRL 137 (163)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHH---HTTCSEEEEECCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHH---hcCCCEEEECCCCCCccccee
Confidence 344455666677777887 77665542 34556665543 25678655542 456666544
No 263
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=26.98 E-value=40 Score=33.56 Aligned_cols=100 Identities=11% Similarity=0.130 Sum_probs=55.2
Q ss_pred EEEEEeecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe-C-CC--C
Q 037501 20 VLAVYTFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT-Q-RA--G 95 (438)
Q Consensus 20 ~~~~~~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T-~-~~--~ 95 (438)
.|..+.|.....+.+...++.+ .....++++||..|.-- +. .+...|+.+++++.++.- + .+ .
T Consensus 27 ~p~~i~~G~g~l~~l~~~l~~~------g~~~~~~~liVtd~~~~-~~------~l~~~L~~~g~~~~~f~~v~~~pt~~ 93 (375)
T 3rf7_A 27 CVPKMIFGRGSFVQLDTVLEQE------RTDANDFVVFLVDDVHQ-HK------PLAARVPNKAHDLVIYVNVDDEPTTV 93 (375)
T ss_dssp CCSCEEESTTGGGGHHHHHHTT------CCSTTCCEEEEEEGGGT-TS------HHHHHSCCCTTSEEEEECCSSCCBHH
T ss_pred CCCeEEEcCCHHHHHHHHHHHh------cccCCCeEEEEECchhh-hh------HHHHHHHhcCCeEEEEeCCCCCCCHH
Confidence 3456888887765544433210 00113678888875421 11 355666777888765431 1 11 2
Q ss_pred hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 96 QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 96 ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
...+.++.+.+....+.|.||++|| |.+..+.-.+..
T Consensus 94 ~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD~AK~iA~ 130 (375)
T 3rf7_A 94 QVDELTAQVKAFNTKLPVSVVGLGG-GSTMDLAKAVSL 130 (375)
T ss_dssp HHHHHHHHHHHHCSSCCSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCC-cHHHHHHHHHHH
Confidence 2333444443322334899999999 888777766543
No 264
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=26.91 E-value=1.3e+02 Score=27.79 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=37.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcce----eEEEEE--eCCC-ChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKV----NTKVIV--TQRA-GQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi----~~~v~~--T~~~-~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
+.+.+.|| |.-..--...+.+-++..+++.|+ ++.+.. |++. ....++++.+. ..++|+||++|.+
T Consensus 7 ~t~~IGvi--~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~---~~~vDgII~~~~~ 79 (302)
T 2qh8_A 7 KTAKVAVS--QIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV---GENPDVLVGIATP 79 (302)
T ss_dssp CCEEEEEE--ESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH---HTCCSEEEEESHH
T ss_pred CCcEEEEE--EeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHH---hCCCCEEEECChH
Confidence 56777776 321111122344458888999998 555543 3321 22334555553 3679999998743
No 265
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=26.87 E-value=1.3e+02 Score=28.07 Aligned_cols=68 Identities=6% Similarity=0.007 Sum_probs=39.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+.+++.|++ |.....-...+++.++..+++.|+++.+..++... ...++.+.+. ..++|+|| ++.+..
T Consensus 59 ~~~~Igvi~-~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 59 NSKTIGLMV-PNISNPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQ---SHRVAGII-ASRSQC 127 (330)
T ss_dssp -CCEEEEEE-SCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTTCSEEE-EETCCC
T ss_pred CCCEEEEEe-CCCCCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---hCCCCEEE-ECCCCC
Confidence 445666666 43322222334455778888889888776664321 2234445443 26799999 887654
No 266
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.75 E-value=55 Score=27.60 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.6
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhh
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+|.|.+.++++...|++.|...+-+
T Consensus 87 ty~~~Adseee~~~WikAi~~A~~~ 111 (126)
T 1wi1_A 87 TVIFASDDEQDRILWVQAMYRATGQ 111 (126)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 5889999999999999999999854
No 267
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=26.68 E-value=1.4e+02 Score=25.78 Aligned_cols=58 Identities=9% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhh-hhcCCCcEEEEEcCCch-----HHHHHHhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKN-KELSSYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~-~~~~~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
.+..+|.+.|+++..+.+- +++..++.+.+.. .+...+|.|+..||=|- .-|++..+.
T Consensus 44 ~L~~~L~~~G~~v~~~~iV-~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~~~~~ 107 (178)
T 3iwt_A 44 IIKQLLIENGHKIIGYSLV-PDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLF 107 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGC
T ss_pred HHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHHHHhh
Confidence 5889999999987544333 3333333333321 12457999999999773 445555443
No 268
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.63 E-value=30 Score=28.88 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=22.2
Q ss_pred EEeecCCChHHHHHHHHHHHHHhhh
Q 037501 23 VYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 23 ~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
.|.|.+.++++.+.|+++|+..+..
T Consensus 101 ~~~f~A~s~~e~~~Wi~ai~~a~~~ 125 (130)
T 1v88_A 101 YLIIRATSESDGRCWMDALELALKS 125 (130)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhc
Confidence 3779999999999999999999853
No 269
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=26.53 E-value=87 Score=26.38 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc---CCchHHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG---GDGFFNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG---GDGTv~EVvN 129 (438)
++++||+= |..|..+++.+.|...+... +.++++.-.... ..++..||.||++. |+|.+...+.
T Consensus 1 ~kilIvY~--S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~----------~~~l~~~d~ii~g~pty~~g~~p~~~~ 67 (169)
T 1czn_A 1 AKIGLFYG--TQTGVTQTIAESIQQEFGGE-SIVDLNDIANAD----------ASDLNAYDYLIIGCPTWNVGELQSDWE 67 (169)
T ss_dssp CCEEEEEC--CSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCC----------GGGGGGCSEEEEECCEETTTEECHHHH
T ss_pred CeEEEEEE--CCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCC----------HhHHhhCCEEEEEecccCCCcCCHHHH
Confidence 45777774 44567778888888888654 556655432211 11356789888765 6676666554
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
.++.
T Consensus 68 ~f~~ 71 (169)
T 1czn_A 68 GIYD 71 (169)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 4444
No 270
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=26.51 E-value=1.3e+02 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=31.0
Q ss_pred HHHHHHH--hcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 74 TVAPIFV--RAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 74 ~v~~~l~--~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
.++.... ..|++++++.|.+.+...+...++. .+++|+||+=
T Consensus 42 ~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~---~~~~dgIIIN 85 (176)
T 2c4w_A 42 IMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESV---GSEYEGIIIN 85 (176)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHH---SSSCCEEEEE
T ss_pred HHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhc---cCCeeEEEEC
Confidence 4555556 6788999999999998888887763 2348888853
No 271
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=26.41 E-value=2.7e+02 Score=24.52 Aligned_cols=81 Identities=5% Similarity=0.024 Sum_probs=49.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeC--CCChHHHHHHHhhhhhcC-CCcEEEEEcCCchHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQ--RAGQAFDVMASTKNKELS-SYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~--~~~ha~~~~~~~~~~~~~-~~d~IV~vGGDGTv~EV 127 (438)
..+++.+|..+.. .......++-.+..|++.+++...+... ....+.+.++++... .. ..|+|+| ..|.+.-.+
T Consensus 119 G~~~i~~i~~~~~-~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~ai~~-~~d~~a~g~ 195 (272)
T 3o74_A 119 APRSIALIGARPE-LSVSQARAGGFDEALQGYTGEVRRYQGEAFSRECGQRLMQQLIDD-LGGLPDALVT-TSYVLLQGV 195 (272)
T ss_dssp CCSEEEEEEECTT-SHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHHHHHHHHHHHHH-HTSCCSEEEE-SSHHHHHHH
T ss_pred CCcEEEEEecCCC-CccHHHHHHHHHHHHHHcCCChheeecCCCCHHHHHHHHHHHHhc-CCCCCcEEEE-eCchHHHHH
Confidence 4578888765543 2222333445778888889877655543 233445555554321 23 5788766 678888888
Q ss_pred HHhhhhc
Q 037501 128 LNGFLSS 134 (438)
Q Consensus 128 vNGL~~~ 134 (438)
++.|...
T Consensus 196 ~~al~~~ 202 (272)
T 3o74_A 196 FDTLQAR 202 (272)
T ss_dssp HHHHHTS
T ss_pred HHHHHHc
Confidence 8888665
No 272
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=26.35 E-value=59 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=27.3
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT 91 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T 91 (438)
+++++||+-- .|...++.+.+...+...|++++++.-
T Consensus 4 mmkilii~~S---~g~T~~la~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 4 KPNILVLFYG---YGSIVELAKEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CCEEEEEECC---SSHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEEEeC---ccHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 4578777754 566677778888888888888877643
No 273
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.29 E-value=1.1e+02 Score=26.51 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCcEEEEEE--cCCCCCCChhhh-HHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC--CCcEEEEEcCCch--
Q 037501 51 RPKNLLIFI--HPMSGKGSGRRT-WETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS--SYDGVLAVGGDGF-- 123 (438)
Q Consensus 51 rpk~llviv--NP~sG~g~~~~~-~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~--~~d~IV~vGGDGT-- 123 (438)
++.++.||. |.. | +-... -..+...|++.|+++..+.+- +++..++.+.+.+ .++ ++|.||..||=|.
T Consensus 12 ~~~rv~Ii~tGdEl-g--~i~Dsn~~~l~~~L~~~G~~v~~~~iv-~Dd~~~i~~~l~~-~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-T--EETDKSGQLLHELLKEAGHKVTSYEIV-KDDKESIQQAVLA-GYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp CCCEEEEEEECSSC-C--TTTCHHHHHHHHHHHHHTCEEEEEEEE-CSSHHHHHHHHHH-HHTCTTCSEEEEECCCSSST
T ss_pred cCCEEEEEEEcCcc-C--eeccChHHHHHHHHHHCCCeEeEEEEe-CCCHHHHHHHHHH-HHhcCCCCEEEEcCCCCCCC
Confidence 444565554 444 3 22222 235888899999876543222 3444444444432 234 7999999999764
Q ss_pred ---HHHHHHhh
Q 037501 124 ---FNEILNGF 131 (438)
Q Consensus 124 ---v~EVvNGL 131 (438)
.-|++..+
T Consensus 87 ~D~t~ea~~~~ 97 (169)
T 1y5e_A 87 RDVTIEAVSAL 97 (169)
T ss_dssp TCCHHHHHHTT
T ss_pred CCCcHHHHHHH
Confidence 44555544
No 274
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=26.11 E-value=65 Score=29.24 Aligned_cols=72 Identities=8% Similarity=0.059 Sum_probs=43.1
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-CChHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-AGQAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
++.+.+.|++.......-..++++.++..+++.|+++.+..+.. .....++.+.+. ..++|+||+++-+..-
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~ 81 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISK---ENSFDAAIIANISNYD 81 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGST---TTCCSEEEESSCCHHH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHh---ccCCCEEEEecCCccc
Confidence 45677888776222222233455567888888899887776543 222233333332 3579999999987654
No 275
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=26.10 E-value=1.5e+02 Score=26.87 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=46.3
Q ss_pred HHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 39 NRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 39 ~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
..|-+.|. .+-+++-+=|+|.+|+=-+ +.-=+|.+|++.|+.+.- +.++ +.+....|+++++
T Consensus 67 ~el~~~L~---~~G~~V~faIHPVAGRMPG-----hMNVLLAEA~VPYd~v~E---------MdeI-N~df~~tDv~lVI 128 (203)
T 2fsv_C 67 REMADVLK---KEGVEVSYAIHPVAGRMPG-----HMNVLLAEANVPYDEVFE---------LEEI-NSSFQTADVAFVI 128 (203)
T ss_dssp HHHHHHHH---HTTCEEEEEECTTCSSSTT-----HHHHHHHHTTCCGGGEEE---------HHHH-GGGSTTCSEEEEE
T ss_pred HHHHHHHH---HcCCeEEEEecccccCCCC-----CccEEEEEecCCHHHHhh---------HHHH-hhhhhhcCEEEEe
Confidence 44444443 2567888888888886544 334467888888874321 1222 2356789999999
Q ss_pred cCCchHHHHHHhhhhc
Q 037501 119 GGDGFFNEILNGFLSS 134 (438)
Q Consensus 119 GGDGTv~EVvNGL~~~ 134 (438)
|--- ++|-....
T Consensus 129 GAND----vVNPaA~~ 140 (203)
T 2fsv_C 129 GAND----VTNPAAKT 140 (203)
T ss_dssp SCCG----GGCGGGTS
T ss_pred cccc----ccCchhhc
Confidence 9754 45555444
No 276
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=26.05 E-value=1.4e+02 Score=28.10 Aligned_cols=66 Identities=6% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC--hHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG--QAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~--ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
+.+.+.|++ |.-...-...+++.++..+++.|+++.+..+...+ ...++.+.+. ..++|+||+++.
T Consensus 60 ~~~~Igvi~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~---~~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVAT-SSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLL---AQRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEE-SCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHH---TTTCSCEEEESC
T ss_pred CCCEEEEEe-CCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHH---HCCCCEEEEecC
Confidence 445566666 33222122334455778888899888777665432 2233455543 367999999864
No 277
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=25.91 E-value=1.8e+02 Score=27.34 Aligned_cols=78 Identities=4% Similarity=-0.062 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++. .....-...+.+.++..+++.|+.+.+..+.... ...++.+.+. ..++|+||+++.+.+- +.+.
T Consensus 69 ~~~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiI~~~~~~~~-~~~~ 143 (355)
T 3e3m_A 69 RSGFVGLLLP-SLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETML---RRRPEAMVLSYDGHTE-QTIR 143 (355)
T ss_dssp --CEEEEEES-CSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH---HTCCSEEEEECSCCCH-HHHH
T ss_pred CCCEEEEEeC-CCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHH---hCCCCEEEEeCCCCCH-HHHH
Confidence 4455666653 3222222344456788888899988777665422 2234445443 2689999999987763 5555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-|..
T Consensus 144 ~l~~ 147 (355)
T 3e3m_A 144 LLQR 147 (355)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 278
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=25.90 E-value=4.4e+02 Score=25.12 Aligned_cols=104 Identities=6% Similarity=-0.042 Sum_probs=60.3
Q ss_pred EeecCCChHHHHHHHHHHHHHhhhc--cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC--CChHHH
Q 037501 24 YTFGHKDLPTCEMWVNRVNAFLNME--VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR--AGQAFD 99 (438)
Q Consensus 24 ~~f~~~~~~~~~~w~~~l~~~~~~~--~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~--~~ha~~ 99 (438)
+.+...+........+.+....... ....|++.+|+.- ..-+....+.++..+++.|+++...++-. ..+...
T Consensus 134 f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~---~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~ 210 (419)
T 3h5l_A 134 FQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGP---GIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGP 210 (419)
T ss_dssp EESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECS---SHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHH
T ss_pred EEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcC---cchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHH
Confidence 3345566656666666665544321 1145788888742 22344556678888999998876544322 234455
Q ss_pred HHHHhhhhhcCCCcEEEEEcCCc-hHHHHHHhhhh
Q 037501 100 VMASTKNKELSSYDGVLAVGGDG-FFNEILNGFLS 133 (438)
Q Consensus 100 ~~~~~~~~~~~~~d~IV~vGGDG-Tv~EVvNGL~~ 133 (438)
++.++.. .+.|+|++.+-.+ ....++..+..
T Consensus 211 ~l~~i~~---~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 211 TLAKLRA---DPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp HHHHHHH---SCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred HHHHHHh---cCCCEEEEccccCchHHHHHHHHHH
Confidence 5665542 5788888776544 35566666644
No 279
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=25.77 E-value=77 Score=28.45 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+++|+-++ | .+......|+++|+++.++.. . .+++.+|+||+-||-++..+
T Consensus 24 ~~I~il~~~--~------~~~~~~~~l~~~G~~~~~~~~--~------------~~l~~~Dglil~GG~~~~~~ 75 (219)
T 1q7r_A 24 MKIGVLGLQ--G------AVREHVRAIEACGAEAVIVKK--S------------EQLEGLDGLVLPGGESTTMR 75 (219)
T ss_dssp CEEEEESCG--G------GCHHHHHHHHHTTCEEEEECS--G------------GGGTTCSEEEECCCCHHHHH
T ss_pred CEEEEEeCC--C------CcHHHHHHHHHCCCEEEEECC--H------------HHHhhCCEEEECCCChHHHH
Confidence 467777442 1 133444677888987765432 1 12467999999999876653
No 280
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=25.67 E-value=1.4e+02 Score=26.53 Aligned_cols=73 Identities=16% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE
Q 037501 35 EMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 35 ~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~ 114 (438)
|.-+..|-+.|.. +-+.+-+=|+|.+|+=-+ +.-=+|.+|++.|+.+.- +.++ +.+....|.
T Consensus 40 Q~~v~el~~~L~~---~G~~V~faIHPVAGRMPG-----hmNVLLAEA~VPYd~v~E---------MdeI-N~df~~tDv 101 (180)
T 1pno_A 40 QHALREMADVLKK---EGVEVSYAIHPVAGRMPG-----HMNVLLAEANVPYDEVFE---------LEEI-NSSFQTADV 101 (180)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEEECTTCTTSTT-----HHHHHHHHTTCCGGGEEE---------HHHH-GGGGGGCSE
T ss_pred HHHHHHHHHHHHH---CCCeEEEEeccccccCCC-----cceEEEEeeCCCHHHHhh---------HHHH-hhhhhhcCE
Confidence 3444555555543 568899999999997554 344568889998874321 1222 235678999
Q ss_pred EEEEcCCchHH
Q 037501 115 VLAVGGDGFFN 125 (438)
Q Consensus 115 IV~vGGDGTv~ 125 (438)
++++|---|+|
T Consensus 102 ~lVIGANDvvN 112 (180)
T 1pno_A 102 AFVIGANDVTN 112 (180)
T ss_dssp EEEESCCGGGC
T ss_pred EEEeccccccC
Confidence 99999755443
No 281
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=25.56 E-value=79 Score=27.60 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
++++|+-+ .|. +......|+++|+++.++. .. . ++..+|+||+-||-++..+
T Consensus 2 m~I~il~~--~~~------~~~~~~~l~~~g~~~~~~~--~~-------~-----~l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLGL--QGA------VREHIHAIEACGAAGLVVK--RP-------E-----QLNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEECS--SSC------CHHHHHHHHHTTCEEEEEC--SG-------G-----GGGGCSEEEECCSCHHHHH
T ss_pred cEEEEEEc--cCC------cHHHHHHHHHCCCEEEEeC--Ch-------H-----HHhhCCEEEECCCChhhHH
Confidence 56777765 221 2333477888898765542 21 0 2356999999999877654
No 282
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=25.45 E-value=74 Score=27.58 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+.++......|++++++.+.+.+...+...++. +.+|+||+=-
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~----~~~dgiiINp 76 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA----DAAEPVILNA 76 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH----HHTCCEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh----hcCcEEEECc
Confidence 345566667889999999999998888887763 3478777543
No 283
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=25.38 E-value=1.2e+02 Score=26.63 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC--CCcEEEEEcCCch-----HHHHHHhhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS--SYDGVLAVGGDGF-----FNEILNGFLS 133 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~--~~d~IV~vGGDGT-----v~EVvNGL~~ 133 (438)
.+..+|+++|+++..+..- +++..++.+.+.+ .++ ++|.||..||=|. ..|++..++.
T Consensus 44 ~L~~~l~~~G~~v~~~~iv-~Dd~~~I~~al~~-a~~~~~~DlVittGG~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 44 IIKQLLIENGHKIIGYSLV-PDDKIKILKAFTD-ALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHH-HHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHH-HHhcCCCCEEEECCCCCCCCCcchHHHHHHHhc
Confidence 5888999999876543222 3334444444332 223 3899999999553 5666665543
No 284
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.29 E-value=3.1e+02 Score=23.16 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhc
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKEL 109 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~ 109 (438)
+.+.....++.|.+ .++++++ |.|....+...+...|...|+.+.++. ....+ +...+. .+
T Consensus 25 ~~~~l~~~~~~i~~--------a~~I~i~-----G~G~S~~~a~~~~~~l~~~g~~~~~~~-~~~~~---~~~~~~--~~ 85 (187)
T 3sho_A 25 QPEAIEAAVEAICR--------ADHVIVV-----GMGFSAAVAVFLGHGLNSLGIRTTVLT-EGGST---LTITLA--NL 85 (187)
T ss_dssp CHHHHHHHHHHHHH--------CSEEEEE-----CCGGGHHHHHHHHHHHHHTTCCEEEEC-CCTHH---HHHHHH--TC
T ss_pred CHHHHHHHHHHHHh--------CCEEEEE-----ecCchHHHHHHHHHHHHhcCCCEEEec-CCchh---HHHHHh--cC
Confidence 44455555554433 2577777 666655555667778888888776543 12222 222222 24
Q ss_pred CCCcEEEEEcCCchHHHHHHhhhh
Q 037501 110 SSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
..-|.+|++.--|.-.|+++.+-.
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~~~ 109 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAALAG 109 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 567999999999988888877643
No 285
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=25.25 E-value=21 Score=35.53 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=38.3
Q ss_pred CCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCC-----hHH-HHHH--HhhhhhcCCCcEEEEEcC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAG-----QAF-DVMA--STKNKELSSYDGVLAVGG 120 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~-----ha~-~~~~--~~~~~~~~~~d~IV~vGG 120 (438)
.++++.|++-| +...++ ....+|+.++++++++-.+... +.. .+.. .+.+.+...||.||+.||
T Consensus 9 ~mkkV~ILl~d------gf~~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG 82 (365)
T 3fse_A 9 GKKKVAILIEQ------AVEDTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGG 82 (365)
T ss_dssp --CEEEEECCT------TBCHHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCB
T ss_pred CceEEEEEECC------CCcHHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECC
Confidence 56889888865 123344 4668899999988876443211 000 0100 011111236999999999
Q ss_pred CchH
Q 037501 121 DGFF 124 (438)
Q Consensus 121 DGTv 124 (438)
.|+-
T Consensus 83 ~g~~ 86 (365)
T 3fse_A 83 MAPD 86 (365)
T ss_dssp THHH
T ss_pred cchh
Confidence 9864
No 286
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=25.20 E-value=1.9e+02 Score=25.27 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=43.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE--EEeCCCChHHHHHHHhhhhhcCCCcEEEEEc--CCch-----
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV--IVTQRAGQAFDVMASTKNKELSSYDGVLAVG--GDGF----- 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v--~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG--GDGT----- 123 (438)
.|+.|++-.+-- ....+-....|.+.|.+.++ +.--.+-+.--.++.+.+ ..+||+||+.| |+-.
T Consensus 3 ~ri~IV~arfn~----~~Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~--~~~yDavIaLG~VG~T~Hfd~V 76 (156)
T 2b99_A 3 KKVGIVDTTFAR----VDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLE--EEGCDIVMALGMPGKAEKDKVC 76 (156)
T ss_dssp CEEEEEEESSCS----SCCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHH--HSCCSEEEEEECCCSSHHHHHH
T ss_pred cEEEEEEEecch----HHHHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHh--cCCCCEEEEecccCCcchhHHH
Confidence 367777755544 35566666777777765443 222222222223344432 36899999877 4433
Q ss_pred HHHHHHhhhhc
Q 037501 124 FNEILNGFLSS 134 (438)
Q Consensus 124 v~EVvNGL~~~ 134 (438)
-+|+..||+.-
T Consensus 77 a~~vs~Gl~~v 87 (156)
T 2b99_A 77 AHEASLGLMLA 87 (156)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34677777653
No 287
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=25.19 E-value=2.2e+02 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEe
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVT 91 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T 91 (438)
++++++||+=-. .|...++.+.+...++..|++++++.-
T Consensus 5 ~mmkilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 5 APVKLAIVFYSS--TGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCCEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEEECC--CChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 456777776322 456677788888888888988887654
No 288
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.01 E-value=1.3e+02 Score=27.39 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=45.8
Q ss_pred CCCcEEEEEEcCCCC-CCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHH
Q 037501 50 GRPKNLLIFIHPMSG-KGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 50 ~rpk~llvivNP~sG-~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EV 127 (438)
++.+.+.|++.-... ..-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+..- +.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiIi~~~~~~~-~~ 81 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILE---TGSADGVIISKIEPND-PR 81 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHH---HTCCSEEEEESCCTTC-HH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHH---cCCccEEEEecCCCCc-HH
Confidence 456677777754332 1122344455778888889887776655432 2233333332 2689999999876442 55
Q ss_pred HHhhhh
Q 037501 128 LNGFLS 133 (438)
Q Consensus 128 vNGL~~ 133 (438)
+.-+..
T Consensus 82 ~~~l~~ 87 (288)
T 3gv0_A 82 VRFMTE 87 (288)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 555543
No 289
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=24.98 E-value=91 Score=28.34 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=35.9
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVM 101 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~ 101 (438)
.+..+++.|+|+++|-|+.. +--.+...|. .|.++-++-....+......
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT-~a~~LA~~la-~g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKST-SAIILATLLS-KNNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp --CCEEEEECCSSSSSCHHH-HHHHHHHHHT-TTSCEEEEEECTTCHHHHHT
T ss_pred CCCCeEEEEEeCCCCchHHH-HHHHHHHHHH-CCCCEEEEECCCCCCHHHHh
Confidence 45568999999999988753 2235667777 89899888888777665543
No 290
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=24.68 E-value=1.4e+02 Score=27.60 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=44.3
Q ss_pred CCcEEEEEE-cCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-C---------ChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 51 RPKNLLIFI-HPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-A---------GQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 51 rpk~llviv-NP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-~---------~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
.++++++|+ .|.. .+...++.+.+...+...|++++++.-.. + .+..++.+.+ ...|+||++-
T Consensus 33 ~~mkIliI~GS~r~-~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i-----~~AD~iI~~s 106 (247)
T 2q62_A 33 HRPRILILYGSLRT-VSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELS-----IWSEGQVWVS 106 (247)
T ss_dssp SCCEEEEEECCCCS-SCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHH-----HHCSEEEEEE
T ss_pred CCCeEEEEEccCCC-CCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHH-----HHCCEEEEEe
Confidence 345676666 4543 34555667778888888888887664322 1 1234444443 4578877764
Q ss_pred --CCchHHHHHHhhhhc
Q 037501 120 --GDGFFNEILNGFLSS 134 (438)
Q Consensus 120 --GDGTv~EVvNGL~~~ 134 (438)
=-|++.-.+..++.+
T Consensus 107 P~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 107 PERHGAMTGIMKAQIDW 123 (247)
T ss_dssp ECSSSSCCHHHHHHHHT
T ss_pred CCCCCCccHHHHHHHHH
Confidence 234444555555543
No 291
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=24.67 E-value=1.3e+02 Score=25.87 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=35.5
Q ss_pred HHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcC--CCcEEEEEcCCch-----HHHHHHhhh
Q 037501 74 TVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELS--SYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~--~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
.+...|++.|+++..+.+- +++..++.+.+.+ .++ ++|.||..||=|. ..|++..+.
T Consensus 25 ~l~~~l~~~G~~v~~~~iv-~Dd~~~i~~~l~~-~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~ 88 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELV-PDEPPMIKKVLRL-WADREGLDLILTNGGTGLAPRDRTPEATRELL 88 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEE-CSCHHHHHHHHHH-HHHTSCCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHHHHHCCCeEeEEEEc-CCCHHHHHHHHHH-HHhcCCCCEEEEcCCCCCCCCCChHHHHHHHh
Confidence 5888899999876543222 3444444444432 223 6999999999663 556666553
No 292
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=24.49 E-value=89 Score=27.59 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=37.3
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhhhc
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFLSS 134 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~~~ 134 (438)
..+...|.+.|+++..+.+- +++..++.+.+.+ .++.+|.||..||=|- ..|++..++.+
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv-~Dd~~~I~~~l~~-a~~~~DlVittGG~g~~~~D~T~ea~a~~~~~ 90 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVV-MDDLDEIGWAFRV-ALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQ 90 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEE-CSCHHHHHHHHHH-HHHHCSEEEEESCCSSSTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHH-HHhcCCEEEEcCCCcCCcccchHHHHHHHcCC
Confidence 35888999999987544332 2333444443322 2345899999999664 55666665554
No 293
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=24.19 E-value=3.9e+02 Score=23.94 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=56.1
Q ss_pred CCChHHHHHHHHHHHHHhhhc------cCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEE---EeC-CCChH
Q 037501 28 HKDLPTCEMWVNRVNAFLNME------VGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVI---VTQ-RAGQA 97 (438)
Q Consensus 28 ~~~~~~~~~w~~~l~~~~~~~------~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~---~T~-~~~ha 97 (438)
..+.+....-.+.|.+.+... ....+++.+|-.|.. .......++-.+..|++++++++.. .+. ....+
T Consensus 110 ~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~-~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~ 188 (309)
T 2fvy_A 110 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG-HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQA 188 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTT-CHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCC-CccHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHH
Confidence 334445555566666644211 134567777665432 2222333444777888888876532 222 22334
Q ss_pred HHHHHHhhhhhc-CCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 98 FDVMASTKNKEL-SSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 98 ~~~~~~~~~~~~-~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+.++++..... ...|+|+| ..|.+.-.+++.|...
T Consensus 189 ~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~ 225 (309)
T 2fvy_A 189 KDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAH 225 (309)
T ss_dssp HHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHc
Confidence 555555532111 14677765 5688777888888665
No 294
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.16 E-value=55 Score=30.10 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=44.7
Q ss_pred CCCcEEEEEEc----CCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchH
Q 037501 50 GRPKNLLIFIH----PMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 50 ~rpk~llvivN----P~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
++.+.+.|++. |.....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+++.+.+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiI~~~~~~~- 80 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIK---QRMVDAFILLYSKEN- 80 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHH---TTCCSEEEESCCCTT-
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHH---hCCcCEEEEcCcccC-
Confidence 46677777772 21111112344556788888888877655444321 1223444442 368999999987754
Q ss_pred HHHHHhhhh
Q 037501 125 NEILNGFLS 133 (438)
Q Consensus 125 ~EVvNGL~~ 133 (438)
.+.+.-|..
T Consensus 81 ~~~~~~l~~ 89 (295)
T 3hcw_A 81 DPIKQMLID 89 (295)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 245554443
No 295
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=24.07 E-value=1.2e+02 Score=26.91 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
.+.+++|+- +.| .+..+...|+++|+++.++ .... ++..+|+||+-||..+...
T Consensus 19 ~~~~I~ii~--~~~------~~~~~~~~l~~~g~~~~~~--~~~~------------~l~~~d~iil~GG~~~~~~ 72 (208)
T 2iss_D 19 SHMKIGVLG--VQG------DVREHVEALHKLGVETLIV--KLPE------------QLDMVDGLILPGGESTTMI 72 (208)
T ss_dssp -CCEEEEEC--SSS------CHHHHHHHHHHTTCEEEEE--CSGG------------GGGGCSEEEECSSCHHHHH
T ss_pred CCcEEEEEE--CCC------chHHHHHHHHHCCCEEEEe--CChH------------HHhhCCEEEECCCcHHHHH
Confidence 445677772 332 3555666777788876554 2211 1346899999999766543
No 296
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=23.94 E-value=1.7e+02 Score=25.44 Aligned_cols=79 Identities=20% Similarity=0.170 Sum_probs=45.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcc-e---eEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc----CCch-
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAK-V---NTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG----GDGF- 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~ag-i---~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG----GDGT- 123 (438)
.|+.|++-.+-- .-..+..+-....|.+.| + +++++.--.+-+.--.++.+.+ ..+||+||+.| |+=.
T Consensus 13 ~ri~IV~arfn~-~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~--~~~yDavIaLG~VIrG~T~H 89 (156)
T 3nq4_A 13 ARVAITIARFNQ-FINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAK--SGKYDAVVALGTVIRGGTAH 89 (156)
T ss_dssp CCEEEEEESTTH-HHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHH--HCSCSEEEEEEEEECCSSTH
T ss_pred CEEEEEEeeCcH-HHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHh--cCCCCEEEEeeeeecCCchH
Confidence 456666643321 111233444566777888 5 5676665555554444555432 36799999998 5543
Q ss_pred ----HHHHHHhhhhc
Q 037501 124 ----FNEILNGFLSS 134 (438)
Q Consensus 124 ----v~EVvNGL~~~ 134 (438)
-+|+..||+.-
T Consensus 90 fd~Va~~v~~Gl~~v 104 (156)
T 3nq4_A 90 FEYVAGGASNGLASV 104 (156)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 34677777654
No 297
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=23.94 E-value=1.1e+02 Score=26.36 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=25.8
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV 90 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~ 90 (438)
++++||+=-. .|...++.+.+...+...|++++++.
T Consensus 6 ~kilii~~S~--~g~T~~la~~i~~~l~~~g~~v~~~~ 41 (200)
T 2a5l_A 6 PYILVLYYSR--HGATAEMARQIARGVEQGGFEARVRT 41 (200)
T ss_dssp CEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEB
T ss_pred ceEEEEEeCC--CChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 5777776432 45667777888888888888887654
No 298
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=23.92 E-value=1.5e+02 Score=28.00 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=44.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHh--cceeEEEEEeC------CCChHHHHHHHhhhh-hcCCCcEEEE-EcCCc
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVR--AKVNTKVIVTQ------RAGQAFDVMASTKNK-ELSSYDGVLA-VGGDG 122 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~--agi~~~v~~T~------~~~ha~~~~~~~~~~-~~~~~d~IV~-vGGDG 122 (438)
.+-.-||.|.++-. ...++....+|+. .|+++.+-.+- .+++.++=++++.+. ..+..++|+| .||+|
T Consensus 3 ~~~I~ivaPSs~~~--~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 80 (274)
T 3g23_A 3 TRRIAICAPSTPFT--REDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYG 80 (274)
T ss_dssp CEEEEEECSSSCCC--HHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSC
T ss_pred CCEEEEEeCCCCCC--HHHHHHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeecccc
Confidence 35577899999753 2345566677776 48776654322 134444434443321 1246787776 58899
Q ss_pred hHHHHHHhh
Q 037501 123 FFNEILNGF 131 (438)
Q Consensus 123 Tv~EVvNGL 131 (438)
+. +++..|
T Consensus 81 a~-rlL~~l 88 (274)
T 3g23_A 81 AN-RIAEDA 88 (274)
T ss_dssp TH-HHHHHH
T ss_pred HH-HHHHhh
Confidence 75 555555
No 299
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.76 E-value=1.5e+02 Score=26.37 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch-----HHHHHHhhh
Q 037501 73 ETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 73 ~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
..+..+|+++|+++..+..- +++..++.+.+.+....++|.||..||=|. ..|++..+.
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv-~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t~eal~~l~ 115 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAV-EADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREIL 115 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEE-CSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHHHHHHCCCEEEEEEEe-CCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccHHHHHHHHh
Confidence 36889999999877543322 233344444443211157999999999774 556666553
No 300
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=23.71 E-value=2.7e+02 Score=24.97 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=47.5
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeC-CCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQ-RAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNE 126 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~-~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~E 126 (438)
..+++.+|..+. +.......++-.+..|++.|+++. +..++ ....+.+.++++.. ....|+|+| ..|.+.-.
T Consensus 124 G~~~i~~i~~~~-~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~ai~~-~~d~~a~g 199 (290)
T 3clk_A 124 GHRQIGIAGIDQ-YPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGK--NTDLTGIIA-ASDMTAIG 199 (290)
T ss_dssp TCCSEEEESCCC-CTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCT--TCCCSEEEE-SSHHHHHH
T ss_pred CCCEEEEEeCCC-CCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhc--cCCCcEEEE-CCcHHHHH
Confidence 346777765543 222333444557778888887653 22222 23345555655532 245787775 66888888
Q ss_pred HHHhhhhcc
Q 037501 127 ILNGFLSSR 135 (438)
Q Consensus 127 VvNGL~~~~ 135 (438)
+++.|....
T Consensus 200 ~~~al~~~g 208 (290)
T 3clk_A 200 ILNQASSFG 208 (290)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 888887654
No 301
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.56 E-value=1e+02 Score=27.67 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=43.4
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
+.+.+.|++. .....-...+++.++..+++.|+++.+..+.... ...++.+.+. ..++|+||+.+.+ .+.+.
T Consensus 7 ~~~~Ig~i~~-~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~---~~~~dgiIi~~~~---~~~~~ 79 (277)
T 3e61_A 7 KSKLIGLLLP-DMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFV---SHNCTGMISTAFN---ENIIE 79 (277)
T ss_dssp ---CEEEEES-CTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH---HTTCSEEEECGGG---HHHHH
T ss_pred CCCEEEEEEC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHH---hCCCCEEEEecCC---hHHHH
Confidence 4566666664 3222222344456778888899988877665422 2233444443 3689999999844 45555
Q ss_pred -hhhh
Q 037501 130 -GFLS 133 (438)
Q Consensus 130 -GL~~ 133 (438)
-|..
T Consensus 80 ~~l~~ 84 (277)
T 3e61_A 80 NTLTD 84 (277)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 5543
No 302
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=23.55 E-value=26 Score=32.22 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCCCCCChhhhHH--HHHHHHHh-cceeEEEEEeCCCChH-----HHHHHHhhhhhcCCCcEEEEEcCCc
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVR-AKVNTKVIVTQRAGQA-----FDVMASTKNKELSSYDGVLAVGGDG 122 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~-agi~~~v~~T~~~~ha-----~~~~~~~~~~~~~~~d~IV~vGGDG 122 (438)
.++++.|++-|. ...++ ....+|.. ++++++++-.+. +.. ..+.....-.+...||.|++.||.|
T Consensus 4 m~~~V~ill~~g------f~~~e~~~p~evl~~~~~~~v~~vs~~~-~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g 76 (231)
T 3noq_A 4 MAVQIGFLLFPE------VQQLDLTGPHDVLASLPDVQVHLIWKEP-GPVVASSGLVLQATTSFADCPPLDVICIPGGTG 76 (231)
T ss_dssp CCEEEEEECCTT------CCHHHHHHHHHHHTTSTTEEEEEEESSS-EEEECTTSCEEEECEETTTCCCCSEEEECCSTT
T ss_pred CcEEEEEEEeCC------CcHHHHHHHHHHHHcCCCCEEEEEECCC-CcEEcCCCCEEecccChhHCCcCCEEEECCCCC
Confidence 567888887762 22333 35567777 677776553321 100 0000000001345799999999998
Q ss_pred hH
Q 037501 123 FF 124 (438)
Q Consensus 123 Tv 124 (438)
+.
T Consensus 77 ~~ 78 (231)
T 3noq_A 77 VG 78 (231)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 303
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=23.26 E-value=1.5e+02 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=23.5
Q ss_pred EEEEEE-cCCCCCCChhhhHHHHHHHHHhc------ceeEEEEE
Q 037501 54 NLLIFI-HPMSGKGSGRRTWETVAPIFVRA------KVNTKVIV 90 (438)
Q Consensus 54 ~llviv-NP~sG~g~~~~~~~~v~~~l~~a------gi~~~v~~ 90 (438)
++++|+ .|..+ +...++.+.+...++.+ |++++++.
T Consensus 2 kilii~gS~r~~-~~t~~la~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 2 KVGIIMGSVRAK-RVCPEIAAYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp EEEEEECCCCSS-CSHHHHHHHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred eEEEEeCCCCCC-CchHHHHHHHHHHHHHhhccCCCCceEEEEe
Confidence 455554 55543 56677777888888776 67777654
No 304
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=23.19 E-value=60 Score=28.25 Aligned_cols=60 Identities=8% Similarity=0.021 Sum_probs=33.4
Q ss_pred cEEEEEE-cCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-------------CChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 53 KNLLIFI-HPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-------------AGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 53 k~llviv-NP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-------------~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
+++++|+ .|..+ +...++.+.+...+. .|.+++++.... ..+..++.+. +..+|+||++
T Consensus 7 Mkilii~gS~r~~-g~t~~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~-----l~~aD~ii~~ 79 (193)
T 1rtt_A 7 IKVLGISGSLRSG-SYNSAALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQ-----IRAADALLFA 79 (193)
T ss_dssp CEEEEEESCCSTT-CHHHHHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHH-----HHHCSEEEEE
T ss_pred ceEEEEECCCCCC-ChHHHHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHH-----HHhCCEEEEE
Confidence 4666665 45533 455566666666666 577777654322 1223333333 3468888876
Q ss_pred c
Q 037501 119 G 119 (438)
Q Consensus 119 G 119 (438)
.
T Consensus 80 s 80 (193)
T 1rtt_A 80 T 80 (193)
T ss_dssp C
T ss_pred c
Confidence 4
No 305
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=23.02 E-value=23 Score=38.73 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCC----hHHHHH--HHhhhhhcCCCcEEEEEcCCchH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAG----QAFDVM--ASTKNKELSSYDGVLAVGGDGFF 124 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~----ha~~~~--~~~~~~~~~~~d~IV~vGGDGTv 124 (438)
|+++||+-+ |- . ..-+..+...|+++|++++++-.+... +...+. ..+.+.....||+||+.|| |.-
T Consensus 601 rKVaILlaD--Gf-E-e~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~ 673 (753)
T 3ttv_A 601 RVVAILLND--EV-R-SADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIA 673 (753)
T ss_dssp CEEEEECCT--TC-C-HHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGG
T ss_pred CEEEEEecC--CC-C-HHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChH
Confidence 678888764 21 1 122345778899999998877554310 110010 0011112235999999999 753
No 306
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=22.99 E-value=1.9e+02 Score=25.88 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=43.3
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
++.+++.|++ |.....-...+++.++..+++.|+++.+..++.... . + ... ++|+||+.+.|-+ .+.+.
T Consensus 6 ~~~~~Igvi~-~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~----~---~~~-~vdgiI~~~~~~~-~~~~~ 74 (277)
T 3cs3_A 6 RQTNIIGVYL-ADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHL-F----I---PEK-MVDGAIILDWTFP-TKEIE 74 (277)
T ss_dssp CCCCEEEEEE-CSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTT-C----C---CTT-TCSEEEEECTTSC-HHHHH
T ss_pred cCCcEEEEEe-cCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHH-H----H---hhc-cccEEEEecCCCC-HHHHH
Confidence 3556676666 433333334455567888888898887766543211 0 0 012 7899999998765 35555
Q ss_pred hhhh
Q 037501 130 GFLS 133 (438)
Q Consensus 130 GL~~ 133 (438)
-+..
T Consensus 75 ~l~~ 78 (277)
T 3cs3_A 75 KFAE 78 (277)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 307
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=22.76 E-value=1e+02 Score=29.18 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHH
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFV 80 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~ 80 (438)
-+.++.+.|.++|.+... ..+.++||+|=..+ +.|.....++..+|.
T Consensus 224 Y~~~eL~~wa~~i~~~~~----~~~~vyv~FnN~~~-g~A~~nA~~L~~~L~ 270 (273)
T 1vpq_A 224 YSEEELKTLFEDVVELSR----RVKETYVFFNNCYK-GQAAINALQFKKMLE 270 (273)
T ss_dssp CCHHHHHHHHHHHHHHHT----TSSEEEEEECCCGG-GHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh----cCCCEEEEEeCCCc-chHHHHHHHHHHHHh
Confidence 467889999999998764 45788888874443 455555556666664
No 308
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=22.71 E-value=1.6e+02 Score=26.77 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=44.9
Q ss_pred HHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 39 NRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 39 ~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
..|-+.|. .+-+.+-+=|+|.+|+=-+ +.-=+|.+|++.|+.+.- +.++ +.+....|+++++
T Consensus 66 ~el~~~L~---~~G~~V~faIHPVAGRMPG-----hMNVLLAEA~VPYd~v~E---------MdeI-N~df~~tDv~lVI 127 (207)
T 1djl_A 66 ADLVKMLT---EQGKKVRFGIHPVAGRMPG-----QLNVLLAEAGVPYDIVLE---------MDEI-NHDFPDTDLVLVI 127 (207)
T ss_dssp HHHHHHHH---HTTCEEEEEECTTCSSSTT-----HHHHHHHHTTCCGGGEEE---------HHHH-GGGGGGCSEEEEE
T ss_pred HHHHHHHH---HCCCeEEEEeCccCCCCCC-----CCcEEEEEeCCCHHHHhh---------HHHH-hhhhhhcCEEEEe
Confidence 44444443 2567888888888886544 334467888888864321 1222 2356789999999
Q ss_pred cCCchHHHHH
Q 037501 119 GGDGFFNEIL 128 (438)
Q Consensus 119 GGDGTv~EVv 128 (438)
|---|+|-..
T Consensus 128 GANDvVNPaA 137 (207)
T 1djl_A 128 GANDTVNSAA 137 (207)
T ss_dssp SCCGGGCTHH
T ss_pred ccccccCCcc
Confidence 9765555443
No 309
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=22.60 E-value=1.7e+02 Score=26.19 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcE
Q 037501 35 EMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDG 114 (438)
Q Consensus 35 ~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~ 114 (438)
|.-+..|-+.|.. +-+.+-+=|+|.+|+=-+ +.-=+|.+|++.|+.+.- +.++ +.+....|.
T Consensus 39 Q~~v~el~~~L~~---~G~~V~faIHPVAGRMPG-----hMNVLLAEA~VPYd~v~E---------MdeI-N~df~~tDv 100 (184)
T 1d4o_A 39 QYPIADLVKMLSE---QGKKVRFGIHPVAGRMPG-----QLNVLLAEAGVPYDIVLE---------MDEI-NHDFPDTDL 100 (184)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEEECTTCSSSTT-----HHHHHHHHHTCCGGGEEE---------HHHH-GGGGGGCSE
T ss_pred HHHHHHHHHHHHH---CCCeEEEEeccccccCCC-----cceEEEEEecCCHHHHHh---------HHHH-hhhhhhcCE
Confidence 3444445555543 567888889999986544 334467888888864321 1222 235678999
Q ss_pred EEEEcCCchHHHHH
Q 037501 115 VLAVGGDGFFNEIL 128 (438)
Q Consensus 115 IV~vGGDGTv~EVv 128 (438)
++++|---|+|-..
T Consensus 101 ~lVIGANDvVNPaA 114 (184)
T 1d4o_A 101 VLVIGANDTVNSAA 114 (184)
T ss_dssp EEEESCSGGGCTHH
T ss_pred EEEecCCccCCCcc
Confidence 99999876665444
No 310
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=22.55 E-value=4.4e+02 Score=23.92 Aligned_cols=98 Identities=7% Similarity=-0.029 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEE-eC-CCChHHHHHHHhhhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIV-TQ-RAGQAFDVMASTKNK 107 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~-T~-~~~ha~~~~~~~~~~ 107 (438)
+.+......+.|.+.+. ..+++.+|..+.. .......++-.+..|++.|+++.... +. ....+.+.++++...
T Consensus 105 ~~~~g~~a~~~L~~~~~----G~~~I~~i~~~~~-~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (313)
T 2h3h_A 105 NYQAGYTAGLIMKELLG----GKGKVVIGTGSLT-AMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNA 179 (313)
T ss_dssp HHHHHHHHHHHHHHHHT----SCSEEEEEESCSS-CHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC----CCCEEEEEECCCC-CccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHHHHHHHHHH
Confidence 34445555566665542 4578888876532 22222333446777888888764332 22 223445555555321
Q ss_pred hcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 108 ELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 108 ~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
....|+|+|. .|.+.-.+++.|...
T Consensus 180 -~~~~~ai~~~-~d~~a~g~~~al~~~ 204 (313)
T 2h3h_A 180 -HPDLDAFFGV-YAYNGPAQALVVKNA 204 (313)
T ss_dssp -CTTCCEEEEC-STTHHHHHHHHHHHT
T ss_pred -CcCceEEEEc-CCCccHHHHHHHHHc
Confidence 2356888775 577766788888664
No 311
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=22.50 E-value=1.3e+02 Score=26.94 Aligned_cols=60 Identities=8% Similarity=-0.070 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHhcceeEEEEEeCCCC-hHHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHHhhh
Q 037501 70 RTWETVAPIFVRAKVNTKVIVTQRAG-QAFDVMASTKNKELSSYDGVLAVGGDGF-FNEILNGFL 132 (438)
Q Consensus 70 ~~~~~v~~~l~~agi~~~v~~T~~~~-ha~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvNGL~ 132 (438)
.+.+.++..+++.|+++.+..+.... ...+..+.+. ..+.|+||+.+.|.. +.+.+.-+.
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~---~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (271)
T 2dri_A 18 SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLT---VRGTKILLINPTDSDAVGNAVKMAN 79 (271)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHT---TTTEEEEEECCSSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHH---HcCCCEEEEeCCChHHHHHHHHHHH
Confidence 34445677788888877665544321 1123344442 357899999887643 234454443
No 312
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=22.47 E-value=82 Score=23.66 Aligned_cols=30 Identities=10% Similarity=0.173 Sum_probs=24.8
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhhccCC
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNMEVGR 51 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~~~~r 51 (438)
++++|...+.+....+.+.|...|....+|
T Consensus 31 r~V~Y~~asi~~L~~~I~~le~~Lg~~~~r 60 (68)
T 1hyw_A 31 RRVEFTATSVSDLKKYIAELEVQTGMTQRR 60 (68)
T ss_dssp CEEEECTTTHHHHHHHHHHHHHHTTTTC--
T ss_pred EEEEEecCCHHHHHHHHHHHHHHhcccCCC
Confidence 579999999999999999999999654333
No 313
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=22.46 E-value=1.3e+02 Score=28.57 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=45.1
Q ss_pred CCcEEEEEE-cCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCC-----------CChHHHHHHHhhhhhcCCCcEEEEE
Q 037501 51 RPKNLLIFI-HPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQR-----------AGQAFDVMASTKNKELSSYDGVLAV 118 (438)
Q Consensus 51 rpk~llviv-NP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~-----------~~ha~~~~~~~~~~~~~~~d~IV~v 118 (438)
.++++++|+ .|.. .+...++.+.+...++..|++++++.-.. ..+..++.+.+ ...|+||++
T Consensus 57 ~~mKILiI~GS~R~-~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I-----~~ADgiV~a 130 (279)
T 2fzv_A 57 PPVRILLLYGSLRA-RSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALS-----EWSEGQVWC 130 (279)
T ss_dssp SCCEEEEEESCCSS-SCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHH-----HHCSEEEEE
T ss_pred CCCEEEEEEeCCCC-CCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHH-----HHCCeEEEE
Confidence 456777776 4443 34556667778888888898887764321 11234444443 456888776
Q ss_pred cC--CchHHHHHHhhhhc
Q 037501 119 GG--DGFFNEILNGFLSS 134 (438)
Q Consensus 119 GG--DGTv~EVvNGL~~~ 134 (438)
-= -|++.-++..++.+
T Consensus 131 SP~Yn~sipg~LKn~IDr 148 (279)
T 2fzv_A 131 SPERHGQITSVMKAQIDH 148 (279)
T ss_dssp EEEETTEECHHHHHHHHH
T ss_pred cCccccCcCHHHHHHHHH
Confidence 42 34444555555543
No 314
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=22.45 E-value=36 Score=29.65 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCcEEEEEEcCCCCCCChhhhHH--HHHHHHHhcceeEEEEEeCCCChHH----------HHH--HHhhhhhcCCCcEEE
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWE--TVAPIFVRAKVNTKVIVTQRAGQAF----------DVM--ASTKNKELSSYDGVL 116 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~--~v~~~l~~agi~~~v~~T~~~~ha~----------~~~--~~~~~~~~~~~d~IV 116 (438)
.++++.|++.|. ....+ .....|+.++++++++-.+. +... .+. ..+.+.+...||.||
T Consensus 8 ~~~~v~il~~~g------~~~~e~~~~~~~l~~ag~~v~~vs~~~-~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~li 80 (190)
T 2vrn_A 8 TGKKIAILAADG------VEEIELTSPRAAIEAAGGTTELISLEP-GEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLL 80 (190)
T ss_dssp TTCEEEEECCTT------CBHHHHHHHHHHHHHTTCEEEEEESSS-SEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEE
T ss_pred CCCEEEEEeCCC------CCHHHHHHHHHHHHHCCCEEEEEecCC-CccccccccccCCcEEeCCCChhhCChhhCCEEE
Confidence 457888887642 22333 35678889998887664332 1100 000 011111124799999
Q ss_pred EEcCCch
Q 037501 117 AVGGDGF 123 (438)
Q Consensus 117 ~vGGDGT 123 (438)
+.||.+.
T Consensus 81 vpGG~~~ 87 (190)
T 2vrn_A 81 LPGGTVN 87 (190)
T ss_dssp ECCCTHH
T ss_pred ECCCchh
Confidence 9999743
No 315
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.39 E-value=1e+02 Score=28.98 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=39.6
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcC
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGG 120 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGG 120 (438)
+.+.+.|++. .....-...+++.++..+++.|+++.+..+.......++.+.+. ..++|+||+++.
T Consensus 63 ~~~~Igvi~~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~vdGiIi~~~ 128 (333)
T 3jvd_A 63 RSALVGVIVP-DLSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLI---SIQAAGIIHVPV 128 (333)
T ss_dssp -CCEEEEEES-CSSSHHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHH---HHTCSEEEECCC
T ss_pred CCCEEEEEeC-CCcChHHHHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHH---hCCCCEEEEcch
Confidence 4456666664 32222223344557788888899888877766222234445443 257999999886
No 316
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=22.33 E-value=2.4e+02 Score=28.04 Aligned_cols=63 Identities=8% Similarity=0.150 Sum_probs=48.2
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCC
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGD 121 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGD 121 (438)
...+++-||++-.+|+++ ..+.++++.+++++|.++-++......-+ .|.+ . ..|+.|.+|=-
T Consensus 262 ~dA~~~GIIvgTLg~Q~~-~~~~~~L~~ll~~~Gkk~y~i~vg~inp~-----KLan--F-~iD~fV~vaCP 324 (378)
T 3lzd_A 262 MDAKKFGVIVSIKKGQLR-LAEAKRIVKLLKKHGREARLIVMNDVNYH-----KLEG--F-PFEAYVVVACP 324 (378)
T ss_dssp TTCCEEEEEEECSTTTCC-HHHHHHHHHHHHHTTCEEEEEEESSCCHH-----HHTT--S-CCSEEEECSCT
T ss_pred hcCCEEEEEEeCCccCCC-HHHHHHHHHHHHHcCCcEEEEEeCCCCHH-----HHhC--C-CCCEEEEecCC
Confidence 467899999999999876 57788999999999999887777766554 2322 3 37887777644
No 317
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=22.12 E-value=1.3e+02 Score=25.87 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=27.0
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHh-cceeEEEEEeC
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVR-AKVNTKVIVTQ 92 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~-agi~~~v~~T~ 92 (438)
++++||+-- ..|...++.+.+...+.. +|++++++.-.
T Consensus 2 mkilii~~S--~~g~t~~la~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYS--MYGHIETMARAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECC--SSSHHHHHHHHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeC--CCcHHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 467777643 345667777888888888 88888877543
No 318
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=22.08 E-value=1.3e+02 Score=29.38 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHhhhcc--CCCcEEEEE-EcCCCCCCCh--hhhHHHHHHHHHh---cceeEEEEEeCCCChHHHHHH
Q 037501 31 LPTCEMWVNRVNAFLNMEV--GRPKNLLIF-IHPMSGKGSG--RRTWETVAPIFVR---AKVNTKVIVTQRAGQAFDVMA 102 (438)
Q Consensus 31 ~~~~~~w~~~l~~~~~~~~--~rpk~llvi-vNP~sG~g~~--~~~~~~v~~~l~~---agi~~~v~~T~~~~ha~~~~~ 102 (438)
.+...+-+..+.+ |...- .+|| +.|. +||++|.+-. .+-.+.|.|.+++ .|+++. .+--|-.+-.
T Consensus 184 ~e~i~~~i~~~~~-L~~~fgi~~Pr-IaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~r~~Gi~~~-----GP~paDT~F~ 256 (330)
T 2hi1_A 184 TARVETVIGIADT-FLKRVGYVKPR-IAVAGVNPHAGENGLFGDEETRILTPAITDARAKGMDVY-----GPCPPDTVFL 256 (330)
T ss_dssp HHHHHHHHHHHHH-HHHHTTCSSCE-EEEECSSGGGSSTTSCCHHHHHTHHHHHHHHHTTTCEEE-----EEECHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHcCCCCCC-EEEEecCCCCCCCCCCCHhHHHHHHHHHHHHHHCCCcee-----CCCCchhhcc
Confidence 4444555555566 55422 2444 5554 8999997532 2222336666554 466542 1222322222
Q ss_pred HhhhhhcCCCcEEEEEc
Q 037501 103 STKNKELSSYDGVLAVG 119 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vG 119 (438)
.. ....||+||+.=
T Consensus 257 ~~---~~~~~D~vlaMY 270 (330)
T 2hi1_A 257 QA---YEGQYDMVVAMY 270 (330)
T ss_dssp HH---HTTSCSEEEESS
T ss_pred cc---ccccCCEEEEcc
Confidence 22 247899999753
No 319
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=22.03 E-value=70 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=22.7
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLN 46 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~ 46 (438)
+.+-|.+++.++.+.|+..|.+.+.
T Consensus 91 ~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 91 KNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 6788999999999999999998874
No 320
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=21.99 E-value=2e+02 Score=26.00 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCCh--HHHHHHHhhhhhcCCCcEEEEEcCCch-HHHHHH
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQ--AFDVMASTKNKELSSYDGVLAVGGDGF-FNEILN 129 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~h--a~~~~~~~~~~~~~~~d~IV~vGGDGT-v~EVvN 129 (438)
+++.++ .|..+..-...+.+-++..+++.|+++.++....... ..+.++.+. ..++|+||+.+.|.. +.+++.
T Consensus 5 ~~Ig~i-~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNI-SKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLI---ARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEE-CSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHH---HTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEE-eccCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHH---HcCCCEEEEecCChHHHHHHHH
Confidence 444444 4554432223344457777888887765443222222 223444443 267999999888754 334444
Q ss_pred hhh
Q 037501 130 GFL 132 (438)
Q Consensus 130 GL~ 132 (438)
-+.
T Consensus 81 ~~~ 83 (303)
T 3d02_A 81 KAR 83 (303)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 321
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=21.70 E-value=66 Score=27.23 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=23.5
Q ss_pred EEEeecCCChHHHHHHHHHHHHHhhh
Q 037501 22 AVYTFGHKDLPTCEMWVNRVNAFLNM 47 (438)
Q Consensus 22 ~~~~f~~~~~~~~~~w~~~l~~~~~~ 47 (438)
+.+.|.+.+.++.+.|++.|+..+..
T Consensus 102 ~~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 102 ERIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp CEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999863
No 322
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.70 E-value=4.3e+02 Score=26.50 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHH---------HhhhhhcCCCcEEEEEcCCch
Q 037501 53 KNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMA---------STKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 53 k~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~---------~~~~~~~~~~d~IV~vGGDGT 123 (438)
|+++|+ |.|+. -..++ ..|.++|.+++++..+-.....+++. .....+++++|.||++-||-.
T Consensus 13 ~~vlVv-----GgG~v--a~~k~-~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~ 84 (457)
T 1pjq_A 13 RDCLIV-----GGGDV--AERKA-RLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDT 84 (457)
T ss_dssp CEEEEE-----CCSHH--HHHHH-HHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHH
T ss_pred CEEEEE-----CCCHH--HHHHH-HHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHH
Confidence 556555 44432 12344 45556888888876653333333321 111235678999999999998
Q ss_pred HHHHHHhhhhc
Q 037501 124 FNEILNGFLSS 134 (438)
Q Consensus 124 v~EVvNGL~~~ 134 (438)
+|+-+-.....
T Consensus 85 ~n~~i~~~a~~ 95 (457)
T 1pjq_A 85 VNQRVSDAAES 95 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877666554
No 323
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=21.70 E-value=37 Score=37.23 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
.++++.+.+ .+.|.+|++|||||+.
T Consensus 99 ~~~~~~l~~---~~Id~LvvIGGdgS~~ 123 (762)
T 3o8l_A 99 LRAAHNLVK---RGITNLCVIGGDGSLT 123 (762)
T ss_dssp HHHHHHHHH---HCCCEEEEEECHHHHH
T ss_pred HHHHHHHHH---cCCCEEEEeCCCchHH
No 324
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=21.53 E-value=51 Score=29.10 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=33.4
Q ss_pred CcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCch
Q 037501 52 PKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGF 123 (438)
Q Consensus 52 pk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGT 123 (438)
+++++|+.++.+- . ...+...|+.+|+++.++... + ++..+|+||+.||-++
T Consensus 2 ~~~i~il~~~~~~---~---~~~~~~~l~~~g~~~~~~~~~-------------~-~~~~~d~lil~Gg~~~ 53 (213)
T 3d54_D 2 KPRACVVVYPGSN---C---DRDAYHALEINGFEPSYVGLD-------------D-KLDDYELIILPGGFSY 53 (213)
T ss_dssp CCEEEEECCTTEE---E---HHHHHHHHHTTTCEEEEECTT-------------C-CCSSCSEEEECEECGG
T ss_pred CcEEEEEEcCCCC---c---cHHHHHHHHHCCCEEEEEecC-------------C-CcccCCEEEECCCCch
Confidence 4678888775321 1 113577788899877655321 1 3467999999999654
No 325
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=21.38 E-value=2.7e+02 Score=24.24 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=44.8
Q ss_pred CCCChhhhHHHHHHHHHhcceeEEEEEeCC---CChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhh
Q 037501 64 GKGSGRRTWETVAPIFVRAKVNTKVIVTQR---AGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLS 133 (438)
Q Consensus 64 G~g~~~~~~~~v~~~l~~agi~~~v~~T~~---~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~ 133 (438)
|...-..+.++....|+..|+.+++.+..- +....++++++ ..--.|++.||.+-+--++-++..
T Consensus 7 gs~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a-----~~~ViIa~AG~aa~Lpgvva~~t~ 74 (157)
T 2ywx_A 7 GSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNS-----KADVFIAIAGLAAHLPGVVASLTT 74 (157)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHC-----CCSEEEEEEESSCCHHHHHHTTCS
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhc-----CCCEEEEEcCchhhhHHHHHhccC
Confidence 444445667788899999999999887642 33444455443 222257788999999999988754
No 326
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=21.34 E-value=3e+02 Score=26.42 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=15.2
Q ss_pred CCceEEEecCCChhHHHHHc
Q 037501 209 ERFRFGIIPAGSTDAIVICT 228 (438)
Q Consensus 209 ~~~~lGiIP~GSgN~~A~sl 228 (438)
..+.|++|--|.-|.+|+|+
T Consensus 146 ~glkva~vGD~~~~rva~Sl 165 (304)
T 3r7f_A 146 KGLTVSIHGDIKHSRVARSN 165 (304)
T ss_dssp TTCEEEEESCCTTCHHHHHH
T ss_pred CCCEEEEEcCCCCcchHHHH
Confidence 36789999877666778775
No 327
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=21.25 E-value=1.2e+02 Score=26.33 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=46.1
Q ss_pred EEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCC-------------ChHHHHHHHhhhhhcCCCcEEEEEc-
Q 037501 54 NLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRA-------------GQAFDVMASTKNKELSSYDGVLAVG- 119 (438)
Q Consensus 54 ~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~-------------~ha~~~~~~~~~~~~~~~d~IV~vG- 119 (438)
+-..|-.|..|.......+++|...|++.| .+ .|.+. +.+.++.+.-. ..+...|.||+..
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~V---l~~hv~~~~l~~~g~~~~~~~~~i~~~d~-~~i~~aD~vvA~l~ 77 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYG-KV---LTEHVADAELEPLGEEAAGGDQFIHEQNL-NWLQQADVVVAEVT 77 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EE---CCCC-------------CCCHHHHHHHHH-HHHHHCSEEEEECS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cc---cccccCchhhhhccccccCCHHHHHHHHH-HHHHHCCEEEEeCC
Confidence 345677898876554567789999999998 33 12221 12333332211 2356789999986
Q ss_pred --CCchHHHHHHhhh
Q 037501 120 --GDGFFNEILNGFL 132 (438)
Q Consensus 120 --GDGTv~EVvNGL~ 132 (438)
..||.-|+-=+..
T Consensus 78 ~~d~Gt~~EiG~A~a 92 (152)
T 4fyk_A 78 QPSLGVGYELGRAVA 92 (152)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 4688888865543
No 328
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.20 E-value=4.3e+02 Score=23.48 Aligned_cols=98 Identities=4% Similarity=-0.066 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCC---ChhhhHHHHHHHHHhcceeEEEE---Ee-CCCChHHHHHH
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKG---SGRRTWETVAPIFVRAKVNTKVI---VT-QRAGQAFDVMA 102 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g---~~~~~~~~v~~~l~~agi~~~v~---~T-~~~~ha~~~~~ 102 (438)
+.+......+.|.+.. +..+++.+|..+..|.. .....++-.+..|++.++.+++. .+ .....+.+.++
T Consensus 117 ~~~~g~~a~~~l~~~g----~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (304)
T 3gbv_A 117 SHQSGYFAARMLMLLA----VNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLD 192 (304)
T ss_dssp HHHHHHHHHHHHHHHS----TTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHh----CCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHH
Confidence 3444555555555543 24478888875433221 22233344677788877655433 22 23455666666
Q ss_pred HhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 103 STKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 103 ~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
++... ....++|+|.. |. .-.+++.|...
T Consensus 193 ~~l~~-~~~~~ai~~~~-d~-a~g~~~al~~~ 221 (304)
T 3gbv_A 193 DFFRE-HPDVKHGITFN-SK-VYIIGEYLQQR 221 (304)
T ss_dssp HHHHH-CTTCCEEEESS-SC-THHHHHHHHHT
T ss_pred HHHHh-CCCeEEEEEcC-cc-hHHHHHHHHHc
Confidence 65431 24678888766 55 44688888665
No 329
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=21.06 E-value=4.4e+02 Score=23.40 Aligned_cols=102 Identities=7% Similarity=0.023 Sum_probs=52.7
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcE--EEEEEcCCCCCCChhhhHHHHHHHHHhc-ceeEEEEE-eCC-CChHHHHHHHh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKN--LLIFIHPMSGKGSGRRTWETVAPIFVRA-KVNTKVIV-TQR-AGQAFDVMAST 104 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~--llvivNP~sG~g~~~~~~~~v~~~l~~a-gi~~~v~~-T~~-~~ha~~~~~~~ 104 (438)
+.+....-++.|.+.+....+..|+ +.+|..|. +.......++-.+..|++. ++++..+. ... ...+.+.++++
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~-~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l 185 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGIL-SAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQI 185 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCT-TCHHHHHHHHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCC-CCchHHHHHHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHHH
Confidence 3344555555565554211112566 44444332 2222223334467778887 77654332 222 23345555554
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.. .....|+|+| ..|.+.-.+++.|...
T Consensus 186 l~-~~~~~~ai~~-~~d~~a~g~~~al~~~ 213 (290)
T 2fn9_A 186 LQ-AHPEIKAIWC-GNDAMALGAMKACEAA 213 (290)
T ss_dssp HH-HCTTCCEEEE-SSHHHHHHHHHHHHHT
T ss_pred HH-hCCCCcEEEE-CCchHHHHHHHHHHHC
Confidence 32 1235787775 5688777888888665
No 330
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=21.04 E-value=3.7e+02 Score=25.80 Aligned_cols=97 Identities=4% Similarity=-0.048 Sum_probs=58.0
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHh
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMAST 104 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~ 104 (438)
.+..++.......++.+.. ..-+++.+|+.-.. .+....+.++..|++.|+++...+.-. .+...++.++
T Consensus 133 r~~~~~~~~~~~~~~~~~~------~g~~~v~ii~~~~~---~g~~~~~~~~~~~~~~g~~v~~~~~~~-~d~~~~l~~i 202 (433)
T 4f11_A 133 RTVPSDNAVNPAILKLLKH------YQWKRVGTLTQDVQ---RFSEVRNDLTGVLYGEDIEISDTESFS-NDPCTSVKKL 202 (433)
T ss_dssp ESSCCGGGHHHHHHHHHHH------TTCCEEEEEEESSH---HHHHHHHHHHHHSSSSSCEEEEEEEES-SCCHHHHHHH
T ss_pred EecCchHHHHHHHHHHHHH------cCCcEEEEEEecch---hhHHHHHHHHHHHHHcCceEEEEeccC-cCHHHHHHHH
Confidence 3445555556655555532 14578888875322 233445668888888898775443322 2444555665
Q ss_pred hhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 105 KNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 105 ~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.+ .+.|+|++.+-......++..+...
T Consensus 203 ~~---~~~~vii~~~~~~~~~~~~~~a~~~ 229 (433)
T 4f11_A 203 KG---NDVRIILGQFDQNMAAKVFCCAYEE 229 (433)
T ss_dssp HH---TTCCEEEEECCHHHHHHHHHHHHHT
T ss_pred hh---CCCeEEEEeCcHHHHHHHHHHHHHc
Confidence 43 5688888887666666676665543
No 331
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=21.01 E-value=2.6e+02 Score=25.83 Aligned_cols=95 Identities=6% Similarity=0.005 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE---EEEeC-CCChHHHHHHHhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK---VIVTQ-RAGQAFDVMASTK 105 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~---v~~T~-~~~ha~~~~~~~~ 105 (438)
+.+.....++.|.+. ..+++.+|..|.. .......++-....|+++|+++. ++... ....+.+.++++.
T Consensus 164 ~~~~~~~a~~~L~~~------G~~~I~~i~~~~~-~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll 236 (332)
T 2o20_A 164 YHLAAYQSTKKLIDS------GNKKIAYIMGSLK-DVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLL 236 (332)
T ss_dssp HHHHHHHHHHHHHHT------TCSSEEEECSCTT-SHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC------CCCeEEEEeCCcc-cccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHh
Confidence 334445555555442 3467877765532 11222334446777888887654 22222 2233455555553
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
+ . .+|+|+| ..|.+--.+++.|....
T Consensus 237 ~--~-~~~ai~~-~~d~~A~g~~~al~~~G 262 (332)
T 2o20_A 237 E--R-GATSAVV-SHDTVAVGLLSAMMDKG 262 (332)
T ss_dssp H--T-TCCEEEE-SCHHHHHHHHHHHHHTT
T ss_pred c--c-CCCEEEE-CChHHHHHHHHHHHHcC
Confidence 2 2 6788776 67887778888887654
No 332
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.94 E-value=2.2e+02 Score=25.51 Aligned_cols=97 Identities=10% Similarity=0.073 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE---EEeC-CCChHHHHHHHhh
Q 037501 30 DLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV---IVTQ-RAGQAFDVMASTK 105 (438)
Q Consensus 30 ~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v---~~T~-~~~ha~~~~~~~~ 105 (438)
+.+......+.|.+. ..+++.+|..+.. .......++-.+..|+++|+++.. .... ....+.+.++++.
T Consensus 110 ~~~~~~~~~~~L~~~------G~~~i~~i~~~~~-~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l 182 (289)
T 1dbq_A 110 AFEGGYMAGRYLIER------GHREIGVIPGPLE-RNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQIL 182 (289)
T ss_dssp HHHHHHHHHHHHHHT------TCCSEEEECCC-------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC------CCCeEEEEecCCc-cccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHH
Confidence 334445555555442 3467877765432 222233345577778888876532 2222 2233455555543
Q ss_pred hhhcCCCcEEEEEcCCchHHHHHHhhhhcc
Q 037501 106 NKELSSYDGVLAVGGDGFFNEILNGFLSSR 135 (438)
Q Consensus 106 ~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~ 135 (438)
. .....|+|+| ..|.+.-.+++.|....
T Consensus 183 ~-~~~~~~ai~~-~~d~~a~g~~~al~~~G 210 (289)
T 1dbq_A 183 S-QPHRPTAVFC-GGDIMAMGALCAADEMG 210 (289)
T ss_dssp T-SSSCCSEEEE-SCHHHHHHHHHHHHHTT
T ss_pred h-CCCCCCEEEE-CCcHHHHHHHHHHHHcC
Confidence 2 1235787776 56888778888887654
No 333
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=20.76 E-value=1.6e+02 Score=25.39 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHH----HHhcceeEEEEEeCCCChHHHHHHHhhhhhcC-CCcEEEEEcCCch-----HHHHHHhhh
Q 037501 74 TVAPI----FVRAKVNTKVIVTQRAGQAFDVMASTKNKELS-SYDGVLAVGGDGF-----FNEILNGFL 132 (438)
Q Consensus 74 ~v~~~----l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~-~~d~IV~vGGDGT-----v~EVvNGL~ 132 (438)
.+... |++.|+++..+.+- +++..++.+.+.+ ..+ ++|.||..||=|. ..|++..+.
T Consensus 29 ~l~~~~~~~l~~~G~~v~~~~iv-~Dd~~~I~~~l~~-a~~~~~DlVittGG~g~~~~D~t~ea~~~~~ 95 (167)
T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVV-PEGYDTVVEAIAT-ALKQGARFIITAGGTGIRAKNQTPEATASFI 95 (167)
T ss_dssp HHHHHHCC----CEEEEEEEEEE-CSSHHHHHHHHHH-HHHTTCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHhHHhHHHHCCCEEeEEEEe-CCCHHHHHHHHHH-HHhCCCCEEEECCCCCCCCCcChHHHHHHHh
Confidence 47778 88889876533222 3344444444432 223 5999999999774 456665543
No 334
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=20.75 E-value=2e+02 Score=26.28 Aligned_cols=105 Identities=7% Similarity=0.064 Sum_probs=0.0
Q ss_pred eecCCChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE-EEEeCCCChHHHHHHH
Q 037501 25 TFGHKDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK-VIVTQRAGQAFDVMAS 103 (438)
Q Consensus 25 ~f~~~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~-v~~T~~~~ha~~~~~~ 103 (438)
.+...+.+.....++.|.+. ..+++.+|..|. +.......++-.+..|+++|+.+. ++.+.... +.+.+++
T Consensus 123 ~V~~D~~~~g~~a~~~L~~~------G~~~I~~i~~~~-~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~-~~~~~~~ 194 (305)
T 3huu_A 123 HIDNDNIDAAYQLTQYLYHL------GHRHILFLQESG-HYAVTEDRSVGFKQYCDDVKISNDCVVIKSMND-LRDFIKQ 194 (305)
T ss_dssp EEECCHHHHHHHHHHHHHHT------TCCSEEEEEESS-CBHHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHHHC--
T ss_pred EEEeCHHHHHHHHHHHHHHC------CCCeEEEEcCCc-ccchhHHHHHHHHHHHHHcCCCcccEEecCcHH-HHHHHHH
Q ss_pred h-hhhhcCCCcEEEEEcCCchHHHHHHhhhhcccCCC
Q 037501 104 T-KNKELSSYDGVLAVGGDGFFNEILNGFLSSRYKAP 139 (438)
Q Consensus 104 ~-~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~~~~~ 139 (438)
+ .. .....|+|+| ..|.+--.+++.|.....++|
T Consensus 195 ~~l~-~~~~~~ai~~-~nd~~A~g~~~al~~~g~~vP 229 (305)
T 3huu_A 195 YCID-ASHMPSVIIT-SDVMLNMQLLNVLYEYQLRIP 229 (305)
T ss_dssp -------CCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred hhhc-CCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
No 335
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=20.73 E-value=46 Score=37.40 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.4
Q ss_pred CCCcEEEEEcCCchHHHH
Q 037501 110 SSYDGVLAVGGDGFFNEI 127 (438)
Q Consensus 110 ~~~d~IV~vGGDGTv~EV 127 (438)
.+.|.+|++|||||+.-+
T Consensus 303 ~gId~LvvIGGDGS~~gA 320 (989)
T 3opy_A 303 NGIDALVVCGGDGSLTGA 320 (989)
T ss_dssp TTCCEEEEEECHHHHHHH
T ss_pred cCCCEEEEeCCChhhHHH
Confidence 578999999999998743
No 336
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.67 E-value=4.9e+02 Score=24.20 Aligned_cols=100 Identities=10% Similarity=-0.011 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHHhhhccCCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEE--EEEeCC---CChHHHHHHH
Q 037501 29 KDLPTCEMWVNRVNAFLNMEVGRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTK--VIVTQR---AGQAFDVMAS 103 (438)
Q Consensus 29 ~~~~~~~~w~~~l~~~~~~~~~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~--v~~T~~---~~ha~~~~~~ 103 (438)
.+.+....-++.|.+. ..+++.+|..|..........++-....|+++|+.+. +..... ...+.+.+++
T Consensus 170 D~~~~~~~a~~~L~~~------G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (355)
T 3e3m_A 170 SNERAAYDMTNALLAR------GFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAEL 243 (355)
T ss_dssp CHHHHHHHHHHHHHHT------TCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC------CCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHH
Confidence 3344455555555442 4567888876654322233444557788888888654 232221 2334555555
Q ss_pred hhhhhcCCCcEEEEEcCCchHHHHHHhhhhccc
Q 037501 104 TKNKELSSYDGVLAVGGDGFFNEILNGFLSSRY 136 (438)
Q Consensus 104 ~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~~~ 136 (438)
+.. .....|+|+| ..|.+--.++..|.....
T Consensus 244 ll~-~~~~~~ai~~-~nD~~A~g~~~al~~~G~ 274 (355)
T 3e3m_A 244 ILQ-EYPDTDCIFC-VSDMPAFGLLSRLKSIGV 274 (355)
T ss_dssp HHH-HCTTCCEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCCCcEEEE-CChHHHHHHHHHHHHcCC
Confidence 432 1246787765 678777778888866543
No 337
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=20.63 E-value=1.7e+02 Score=25.24 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEE
Q 037501 51 RPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKV 88 (438)
Q Consensus 51 rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v 88 (438)
.+++.+||++-..| ....|..+.+.|...|+.+-.
T Consensus 10 ~~~~~vvllHG~~~---~~~~~~~~~~~l~~~g~~v~~ 44 (267)
T 3sty_A 10 FVKKHFVLVHAAFH---GAWCWYKIVALMRSSGHNVTA 44 (267)
T ss_dssp CCCCEEEEECCTTC---CGGGGHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCC---CcchHHHHHHHHHhcCCeEEE
Confidence 45778899985554 345688888888877765433
No 338
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.38 E-value=3.9e+02 Score=22.58 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHHhcceeEEEEEeC-----CCChH--HHHHHHhhhhhcCCCcEEEEEcCCchHHHHHHhhhhc
Q 037501 74 TVAPIFVRAKVNTKVIVTQ-----RAGQA--FDVMASTKNKELSSYDGVLAVGGDGFFNEILNGFLSS 134 (438)
Q Consensus 74 ~v~~~l~~agi~~~v~~T~-----~~~ha--~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvNGL~~~ 134 (438)
.....|...|+++...... ....+ ..++-.+.+. .+.+|.+|++.|||=+-.++.-|..+
T Consensus 65 ~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~-a~~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 65 QFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEI-APDVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp HHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHH-GGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHh-hccCCEEEEEECChhHHHHHHHHHHH
Confidence 4556677778766432111 01111 1233222221 25799999999999999999988763
No 339
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.32 E-value=1.1e+02 Score=24.74 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=34.3
Q ss_pred EEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEc
Q 037501 56 LIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVG 119 (438)
Q Consensus 56 lvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vG 119 (438)
+|++- |..|..+++.+.+...|...|++++++.-.... . . ++..+|.||++.
T Consensus 2 ~I~Y~--S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-~----~-----~l~~~d~iiig~ 53 (138)
T 5nul_A 2 KIVYW--SGTGNTEKMAELIAKGIIESGKDVNTINVSDVN-I----D-----ELLNEDILILGC 53 (138)
T ss_dssp EEEEE--CSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC-H----H-----HHTTCSEEEEEE
T ss_pred EEEEE--CCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC-H----H-----HHhhCCEEEEEc
Confidence 34444 335677788888999999999988877544322 1 1 245789877653
No 340
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=20.32 E-value=3.8e+02 Score=23.87 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCcEEEEEEcCCCCCCChhhhHHHHHHHHHhcceeEEEEEeCCCChHHHHHHHhhhhhcCCCcEEEEEcCCchHHHHHH
Q 037501 50 GRPKNLLIFIHPMSGKGSGRRTWETVAPIFVRAKVNTKVIVTQRAGQAFDVMASTKNKELSSYDGVLAVGGDGFFNEILN 129 (438)
Q Consensus 50 ~rpk~llvivNP~sG~g~~~~~~~~v~~~l~~agi~~~v~~T~~~~ha~~~~~~~~~~~~~~~d~IV~vGGDGTv~EVvN 129 (438)
...+++.+|..| .+.......++-.+..|+++|+++... ........+.++++.. .....|+|+| ..|.+--.+++
T Consensus 120 ~G~~~I~~i~~~-~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ai~~-~~d~~A~g~~~ 195 (277)
T 3hs3_A 120 KKIEKVLIQHWP-LSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNPYISAQSALN-KSNQFDAIIT-VNDLYAAEIIK 195 (277)
T ss_dssp TTCCEEEEEESC-TTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCHHHHHHHHHH-TGGGCSEEEC-SSHHHHHHHHH
T ss_pred hCCCEEEEEeCC-CcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCchHHHHHHHHc-CCCCCCEEEE-CCHHHHHHHHH
Q ss_pred hhhhcccCCC
Q 037501 130 GFLSSRYKAP 139 (438)
Q Consensus 130 GL~~~~~~~~ 139 (438)
.|.....++|
T Consensus 196 al~~~g~~vP 205 (277)
T 3hs3_A 196 EAKRRNLKIP 205 (277)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHcCCCCC
No 341
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=20.22 E-value=41 Score=37.73 Aligned_cols=25 Identities=20% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhcCCCcEEEEEcCCchHH
Q 037501 98 FDVMASTKNKELSSYDGVLAVGGDGFFN 125 (438)
Q Consensus 98 ~~~~~~~~~~~~~~~d~IV~vGGDGTv~ 125 (438)
...++.+.+ .+.|.+|++|||||+.
T Consensus 266 ~~~~~~L~~---~gId~LvvIGGDGS~~ 290 (941)
T 3opy_B 266 LKACKNMID---MGIDALIVCGGDGSLT 290 (941)
T ss_dssp HHHHHHHHH---HTCCEEEEEECHHHHH
T ss_pred HHHHHHHHH---cCCCEEEEeCCChhHH
Done!