Query 037502
Match_columns 426
No_of_seqs 385 out of 2897
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 6.7E-27 1.4E-31 216.1 6.5 136 14-181 128-265 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.8 1.2E-21 2.5E-26 181.5 4.3 116 5-155 147-265 (279)
3 KOG1074 Transcriptional repres 99.8 9.4E-20 2E-24 188.8 1.1 85 97-189 605-698 (958)
4 KOG3608 Zn finger proteins [Ge 99.7 8.7E-18 1.9E-22 159.4 1.9 150 5-186 196-348 (467)
5 KOG1074 Transcriptional repres 99.7 2.4E-17 5.3E-22 171.1 2.9 56 134-189 880-937 (958)
6 KOG3576 Ovo and related transc 99.7 4.5E-17 9.7E-22 143.9 3.2 111 54-185 115-238 (267)
7 KOG3576 Ovo and related transc 99.6 2.9E-16 6.3E-21 138.8 1.0 114 12-157 113-237 (267)
8 KOG3623 Homeobox transcription 99.4 8.2E-14 1.8E-18 142.9 3.4 107 56-181 210-331 (1007)
9 KOG3608 Zn finger proteins [Ge 99.4 1.3E-13 2.8E-18 131.2 2.7 138 14-186 235-379 (467)
10 KOG3623 Homeobox transcription 99.4 1.3E-13 2.8E-18 141.5 1.5 77 95-179 892-970 (1007)
11 PLN03086 PRLI-interacting fact 99.2 2.8E-11 6E-16 125.3 9.0 106 52-184 449-565 (567)
12 PHA00733 hypothetical protein 98.9 1.6E-09 3.5E-14 92.4 3.8 85 53-157 37-124 (128)
13 PLN03086 PRLI-interacting fact 98.8 3.7E-09 8.1E-14 109.7 5.7 104 14-157 451-565 (567)
14 PHA00733 hypothetical protein 98.7 1.1E-08 2.3E-13 87.3 4.9 84 93-184 36-124 (128)
15 PHA02768 hypothetical protein; 98.6 2.7E-08 5.9E-13 70.8 2.2 41 134-175 6-47 (55)
16 KOG3993 Transcription factor ( 98.5 4.2E-08 9.2E-13 96.1 0.8 149 16-185 267-484 (500)
17 PHA02768 hypothetical protein; 98.3 2.7E-07 5.9E-12 65.7 2.2 44 97-150 5-48 (55)
18 PF13465 zf-H2C2_2: Zinc-finge 98.1 1.4E-06 3E-11 52.9 2.2 26 119-145 1-26 (26)
19 PF13465 zf-H2C2_2: Zinc-finge 98.1 6.9E-07 1.5E-11 54.2 -0.4 25 44-68 2-26 (26)
20 KOG3993 Transcription factor ( 97.9 1.7E-06 3.8E-11 85.0 -0.3 82 96-185 266-382 (500)
21 PHA00616 hypothetical protein 97.8 9.8E-06 2.1E-10 55.0 1.6 32 133-164 1-33 (44)
22 PHA00732 hypothetical protein 97.7 2.2E-05 4.9E-10 61.0 2.9 46 97-155 1-46 (79)
23 PHA00616 hypothetical protein 97.7 9.6E-06 2.1E-10 55.1 0.7 34 56-102 1-34 (44)
24 PHA00732 hypothetical protein 97.6 4.2E-05 9.1E-10 59.5 2.6 44 56-124 1-44 (79)
25 PF05605 zf-Di19: Drought indu 97.6 0.00011 2.4E-09 52.8 4.6 49 97-155 2-51 (54)
26 PF00096 zf-C2H2: Zinc finger, 97.5 3.9E-05 8.4E-10 44.9 1.3 23 57-79 1-23 (23)
27 COG5189 SFP1 Putative transcri 97.5 2.3E-05 5E-10 74.5 0.5 26 94-124 346-371 (423)
28 COG5189 SFP1 Putative transcri 97.5 4.4E-05 9.5E-10 72.7 1.4 64 14-77 347-419 (423)
29 PF05605 zf-Di19: Drought indu 97.1 0.00073 1.6E-08 48.6 4.3 49 133-184 2-54 (54)
30 PF00096 zf-C2H2: Zinc finger, 97.1 0.00034 7.3E-09 40.8 1.7 20 135-154 2-21 (23)
31 PF13894 zf-C2H2_4: C2H2-type 97.0 0.00036 7.7E-09 40.7 1.6 24 57-80 1-24 (24)
32 PF13912 zf-C2H2_6: C2H2-type 97.0 0.00035 7.6E-09 42.5 1.3 25 56-80 1-25 (27)
33 PF12756 zf-C2H2_2: C2H2 type 96.5 0.0019 4.2E-08 51.8 2.8 72 58-155 1-72 (100)
34 PF13894 zf-C2H2_4: C2H2-type 96.4 0.0025 5.5E-08 37.0 2.2 22 134-155 1-22 (24)
35 PF12756 zf-C2H2_2: C2H2 type 96.3 0.0034 7.4E-08 50.4 3.1 74 99-184 1-75 (100)
36 PF13912 zf-C2H2_6: C2H2-type 96.3 0.0026 5.7E-08 38.5 1.7 22 161-182 2-24 (27)
37 smart00355 ZnF_C2H2 zinc finge 96.1 0.0035 7.6E-08 36.9 1.7 23 57-79 1-23 (26)
38 KOG2231 Predicted E3 ubiquitin 95.9 0.013 2.9E-07 62.3 5.8 67 99-181 184-261 (669)
39 COG5048 FOG: Zn-finger [Genera 95.8 0.004 8.7E-08 63.0 1.8 140 15-183 288-442 (467)
40 PF09237 GAGA: GAGA factor; I 95.5 0.0087 1.9E-07 41.7 1.9 33 128-160 19-52 (54)
41 PF12874 zf-met: Zinc-finger o 95.5 0.0066 1.4E-07 36.0 1.2 23 57-79 1-23 (25)
42 smart00355 ZnF_C2H2 zinc finge 94.9 0.022 4.7E-07 33.4 2.2 22 134-155 1-22 (26)
43 KOG1146 Homeobox protein [Gene 94.6 0.021 4.5E-07 64.3 2.6 124 52-182 461-641 (1406)
44 PF12171 zf-C2H2_jaz: Zinc-fin 94.5 0.016 3.4E-07 35.2 0.9 23 57-79 2-24 (27)
45 PRK04860 hypothetical protein; 94.1 0.028 6.1E-07 49.8 1.9 36 133-172 119-156 (160)
46 PRK04860 hypothetical protein; 94.1 0.036 7.7E-07 49.1 2.5 33 55-104 118-150 (160)
47 PF09237 GAGA: GAGA factor; I 93.7 0.044 9.6E-07 38.3 1.8 29 52-80 20-48 (54)
48 COG5048 FOG: Zn-finger [Genera 93.5 0.06 1.3E-06 54.4 3.3 146 4-175 305-461 (467)
49 PF12874 zf-met: Zinc-finger o 93.5 0.038 8.2E-07 32.6 1.1 21 134-154 1-21 (25)
50 PF13909 zf-H2C2_5: C2H2-type 92.3 0.073 1.6E-06 31.1 1.2 23 57-80 1-23 (24)
51 PF12171 zf-C2H2_jaz: Zinc-fin 92.2 0.036 7.8E-07 33.6 -0.3 22 134-155 2-23 (27)
52 PRK06568 F0F1 ATP synthase sub 92.2 2.1 4.7E-05 37.6 10.7 64 340-406 76-140 (154)
53 KOG2231 Predicted E3 ubiquitin 91.6 0.098 2.1E-06 55.9 2.0 11 17-27 100-110 (669)
54 KOG2186 Cell growth-regulating 91.0 0.14 3.1E-06 47.8 2.2 45 134-180 4-49 (276)
55 PF13909 zf-H2C2_5: C2H2-type 90.4 0.23 4.9E-06 29.0 2.0 20 135-155 2-21 (24)
56 smart00451 ZnF_U1 U1-like zinc 89.3 0.24 5.2E-06 31.6 1.6 24 56-79 3-26 (35)
57 KOG1146 Homeobox protein [Gene 89.2 0.14 3E-06 58.1 0.6 70 113-182 445-541 (1406)
58 KOG4173 Alpha-SNAP protein [In 88.3 0.2 4.4E-06 45.4 1.0 80 93-181 75-168 (253)
59 PRK14471 F0F1 ATP synthase sub 88.0 8.9 0.00019 33.9 11.4 36 340-375 80-116 (164)
60 PF13913 zf-C2HC_2: zinc-finge 87.4 0.42 9E-06 28.5 1.6 21 57-78 3-23 (25)
61 PRK14475 F0F1 ATP synthase sub 87.0 10 0.00023 33.7 11.3 58 339-399 81-139 (167)
62 PRK06568 F0F1 ATP synthase sub 86.8 10 0.00023 33.3 10.8 30 358-387 80-110 (154)
63 TIGR03825 FliH_bacil flagellar 86.8 7.9 0.00017 37.0 11.0 29 372-400 120-148 (255)
64 PRK07352 F0F1 ATP synthase sub 86.8 11 0.00024 33.7 11.4 37 339-375 90-127 (174)
65 smart00451 ZnF_U1 U1-like zinc 86.7 0.47 1E-05 30.2 1.7 23 133-155 3-25 (35)
66 PRK14472 F0F1 ATP synthase sub 86.7 11 0.00024 33.7 11.4 37 339-375 89-126 (175)
67 COG5236 Uncharacterized conser 86.5 0.5 1.1E-05 46.2 2.6 71 99-185 222-307 (493)
68 COG5236 Uncharacterized conser 86.5 0.9 2E-05 44.4 4.3 78 58-157 222-306 (493)
69 KOG2785 C2H2-type Zn-finger pr 86.5 0.39 8.5E-06 47.6 1.8 50 132-181 165-242 (390)
70 PRK09174 F0F1 ATP synthase sub 86.2 9.7 0.00021 35.2 10.9 30 360-392 146-175 (204)
71 PRK06231 F0F1 ATP synthase sub 85.8 12 0.00027 34.5 11.4 55 339-396 119-174 (205)
72 TIGR03321 alt_F1F0_F0_B altern 85.7 11 0.00023 35.9 11.3 43 355-400 93-135 (246)
73 PF13913 zf-C2HC_2: zinc-finge 85.5 0.74 1.6E-05 27.4 2.1 20 135-155 4-23 (25)
74 PF06188 HrpE: HrpE/YscL/FliH 84.0 12 0.00025 34.2 10.2 57 339-397 46-102 (191)
75 TIGR02499 HrpE_YscL_not type I 83.8 13 0.00029 32.6 10.4 43 363-405 51-93 (166)
76 PRK05759 F0F1 ATP synthase sub 82.6 24 0.00051 30.8 11.4 37 339-375 75-112 (156)
77 cd00350 rubredoxin_like Rubred 82.4 0.82 1.8E-05 29.1 1.4 25 17-65 2-26 (33)
78 CHL00019 atpF ATP synthase CF0 82.4 21 0.00046 32.2 11.3 41 357-400 114-154 (184)
79 PF09538 FYDLN_acid: Protein o 82.2 0.77 1.7E-05 37.9 1.6 30 17-69 10-39 (108)
80 PRK06569 F0F1 ATP synthase sub 82.0 24 0.00053 31.1 10.9 32 340-371 53-84 (155)
81 COG1198 PriA Primosomal protei 81.8 0.69 1.5E-05 50.6 1.5 13 130-142 472-484 (730)
82 PRK08475 F0F1 ATP synthase sub 81.5 24 0.00052 31.4 11.1 35 339-373 93-128 (167)
83 CHL00118 atpG ATP synthase CF0 81.5 28 0.0006 30.5 11.4 36 339-374 93-129 (156)
84 COG4049 Uncharacterized protei 81.1 0.71 1.5E-05 32.9 0.8 29 129-157 13-42 (65)
85 PRK14473 F0F1 ATP synthase sub 80.9 25 0.00053 31.1 10.9 33 356-391 97-129 (164)
86 KOG2893 Zn finger protein [Gen 80.6 0.47 1E-05 44.0 -0.3 49 55-128 10-58 (341)
87 PRK13453 F0F1 ATP synthase sub 80.6 29 0.00063 31.0 11.4 49 339-390 89-138 (173)
88 COG1592 Rubrerythrin [Energy p 80.4 1.1 2.4E-05 39.9 2.0 25 96-141 133-157 (166)
89 KOG4691 Uncharacterized conser 80.0 21 0.00046 32.3 9.8 66 321-389 102-167 (227)
90 PRK07353 F0F1 ATP synthase sub 79.1 34 0.00073 29.2 10.9 36 339-374 76-112 (140)
91 PRK14474 F0F1 ATP synthase sub 79.0 29 0.00063 33.1 11.4 34 356-392 94-127 (250)
92 PRK13460 F0F1 ATP synthase sub 79.0 35 0.00076 30.4 11.4 36 340-375 88-124 (173)
93 PRK13461 F0F1 ATP synthase sub 77.8 34 0.00074 30.0 10.8 58 339-399 76-134 (159)
94 PF09986 DUF2225: Uncharacteri 77.8 1.3 2.9E-05 41.2 1.8 52 14-69 3-61 (214)
95 PRK14475 F0F1 ATP synthase sub 77.6 32 0.00069 30.5 10.6 13 375-387 104-116 (167)
96 PF06409 NPIP: Nuclear pore co 76.5 15 0.00033 34.2 8.1 51 327-377 124-176 (265)
97 PRK14471 F0F1 ATP synthase sub 75.8 41 0.0009 29.6 10.8 12 378-389 116-127 (164)
98 cd03401 Band_7_prohibitin Band 75.3 7.1 0.00015 35.3 5.9 28 345-372 155-182 (196)
99 COG4372 Uncharacterized protei 75.3 40 0.00088 33.9 11.2 54 335-388 116-169 (499)
100 PRK13428 F0F1 ATP synthase sub 75.0 33 0.00072 35.6 11.4 37 339-375 72-109 (445)
101 cd00729 rubredoxin_SM Rubredox 75.0 1.8 3.9E-05 27.8 1.3 25 16-64 2-26 (34)
102 PF03604 DNA_RNApol_7kD: DNA d 74.6 2.2 4.8E-05 27.0 1.6 26 17-65 1-26 (32)
103 PRK08404 V-type ATP synthase s 74.4 46 0.00099 27.1 10.2 61 327-390 16-78 (103)
104 PRK13455 F0F1 ATP synthase sub 74.1 35 0.00075 30.8 10.1 35 362-399 122-156 (184)
105 PRK13461 F0F1 ATP synthase sub 73.6 57 0.0012 28.6 11.1 14 374-387 98-111 (159)
106 smart00659 RPOLCX RNA polymera 73.6 2.1 4.5E-05 29.3 1.4 26 16-64 2-27 (44)
107 TIGR02300 FYDLN_acid conserved 73.5 2.1 4.6E-05 36.0 1.8 35 16-73 9-43 (129)
108 COG4372 Uncharacterized protei 73.3 23 0.00049 35.6 8.9 29 323-351 83-111 (499)
109 KOG2186 Cell growth-regulating 73.0 1.4 3.1E-05 41.4 0.7 48 17-79 4-51 (276)
110 PRK09174 F0F1 ATP synthase sub 72.7 41 0.00088 31.1 10.2 6 380-385 152-157 (204)
111 PF02050 FliJ: Flagellar FliJ 71.8 51 0.0011 26.5 10.1 48 340-387 57-104 (123)
112 KOG0994 Extracellular matrix g 71.7 40 0.00086 38.7 11.2 42 346-387 1574-1615(1758)
113 COG2888 Predicted Zn-ribbon RN 70.9 1.8 3.9E-05 31.4 0.6 32 16-64 27-58 (61)
114 TIGR00999 8a0102 Membrane Fusi 70.7 20 0.00043 33.8 8.1 35 353-387 51-85 (265)
115 PRK01558 V-type ATP synthase s 70.5 35 0.00075 31.3 9.2 24 339-362 38-61 (198)
116 PRK13454 F0F1 ATP synthase sub 70.2 70 0.0015 28.8 11.0 11 377-387 138-148 (181)
117 PRK00398 rpoP DNA-directed RNA 70.1 2.7 5.8E-05 28.8 1.4 30 15-66 2-31 (46)
118 PRK06231 F0F1 ATP synthase sub 69.5 50 0.0011 30.4 10.1 11 376-386 143-153 (205)
119 PRK14473 F0F1 ATP synthase sub 69.1 58 0.0013 28.7 10.1 10 377-386 104-113 (164)
120 CHL00019 atpF ATP synthase CF0 69.0 54 0.0012 29.5 10.1 25 340-364 67-91 (184)
121 KOG2893 Zn finger protein [Gen 68.8 1.5 3.2E-05 40.8 -0.2 45 95-152 9-53 (341)
122 PHA00626 hypothetical protein 68.1 3.5 7.6E-05 29.5 1.6 15 55-69 22-36 (59)
123 TIGR00998 8a0101 efflux pump m 67.5 42 0.00092 32.9 9.9 21 357-377 147-167 (334)
124 PRK08476 F0F1 ATP synthase sub 67.3 81 0.0018 27.1 10.7 15 358-372 87-101 (141)
125 TIGR02098 MJ0042_CXXC MJ0042 f 67.2 2.3 5.1E-05 27.7 0.6 34 17-67 3-36 (38)
126 PF10571 UPF0547: Uncharacteri 66.5 3.7 8E-05 24.7 1.3 11 57-67 15-25 (26)
127 PRK00464 nrdR transcriptional 66.4 2.6 5.7E-05 37.1 0.9 18 56-73 28-45 (154)
128 KOG2482 Predicted C2H2-type Zn 66.3 6.9 0.00015 38.5 3.7 23 56-78 195-217 (423)
129 PRK13453 F0F1 ATP synthase sub 66.3 96 0.0021 27.6 11.1 10 377-386 114-123 (173)
130 KOG2507 Ubiquitin regulatory p 66.2 43 0.00093 34.2 9.3 30 357-386 244-273 (506)
131 COG1592 Rubrerythrin [Energy p 65.9 3.5 7.7E-05 36.7 1.6 23 56-104 134-156 (166)
132 PRK06937 type III secretion sy 65.7 64 0.0014 29.6 10.1 23 381-403 86-108 (204)
133 PF12013 DUF3505: Protein of u 65.5 14 0.00029 30.3 5.0 26 159-184 79-109 (109)
134 PF11839 DUF3359: Protein of u 64.6 74 0.0016 25.6 10.5 50 335-384 46-95 (96)
135 PRK07352 F0F1 ATP synthase sub 64.5 77 0.0017 28.2 10.1 12 379-390 128-139 (174)
136 PRK14161 heat shock protein Gr 64.4 35 0.00077 30.8 7.8 9 354-362 45-53 (178)
137 KOG2482 Predicted C2H2-type Zn 63.9 8.5 0.00018 37.9 3.9 54 96-155 143-217 (423)
138 PF12013 DUF3505: Protein of u 63.4 14 0.0003 30.3 4.6 24 134-157 81-109 (109)
139 PF05701 WEMBL: Weak chloropla 62.7 53 0.0011 34.9 10.0 62 329-390 35-96 (522)
140 PRK06569 F0F1 ATP synthase sub 62.5 1.1E+02 0.0024 27.0 10.7 35 327-361 47-81 (155)
141 PF09723 Zn-ribbon_8: Zinc rib 62.0 3 6.6E-05 28.1 0.3 16 56-71 5-20 (42)
142 COG4530 Uncharacterized protei 61.3 5.5 0.00012 32.6 1.8 32 18-73 11-42 (129)
143 KOG1280 Uncharacterized conser 60.8 5.1 0.00011 39.4 1.8 8 17-24 9-16 (381)
144 PRK10476 multidrug resistance 60.5 67 0.0014 31.9 9.9 19 358-376 154-172 (346)
145 PRK15030 multidrug efflux syst 60.2 47 0.001 33.8 8.8 35 353-387 138-172 (397)
146 PRK14890 putative Zn-ribbon RN 60.0 4.3 9.4E-05 29.5 0.8 10 55-64 47-56 (59)
147 PF09538 FYDLN_acid: Protein o 59.9 5.5 0.00012 32.9 1.6 10 135-144 11-20 (108)
148 PRK13428 F0F1 ATP synthase sub 59.9 76 0.0016 33.0 10.4 24 377-400 108-131 (445)
149 PF05262 Borrelia_P83: Borreli 58.8 41 0.00088 35.3 8.0 6 221-226 149-154 (489)
150 PF09986 DUF2225: Uncharacteri 58.8 3.6 7.9E-05 38.3 0.4 23 55-77 4-26 (214)
151 cd00730 rubredoxin Rubredoxin; 58.7 11 0.00024 26.5 2.7 14 17-30 2-15 (50)
152 PF13717 zinc_ribbon_4: zinc-r 58.5 5.1 0.00011 26.0 1.0 34 17-67 3-36 (36)
153 PRK15030 multidrug efflux syst 58.5 41 0.00089 34.3 8.1 32 346-377 138-169 (397)
154 smart00834 CxxC_CXXC_SSSS Puta 58.4 5.1 0.00011 26.3 1.0 31 16-65 5-35 (41)
155 PRK05759 F0F1 ATP synthase sub 58.4 1.2E+02 0.0026 26.2 10.1 18 379-396 113-130 (156)
156 PF13719 zinc_ribbon_5: zinc-r 58.1 4.9 0.00011 26.3 0.8 34 17-67 3-36 (37)
157 PRK01005 V-type ATP synthase s 57.9 81 0.0018 29.2 9.1 21 339-359 43-63 (207)
158 TIGR02605 CxxC_CxxC_SSSS putat 57.7 4.4 9.6E-05 28.4 0.6 13 57-69 6-18 (52)
159 COG0711 AtpF F0F1-type ATP syn 57.3 1.3E+02 0.0028 26.5 10.1 25 360-387 99-123 (161)
160 KOG2412 Nuclear-export-signal 57.3 67 0.0015 33.8 9.1 14 346-359 235-248 (591)
161 COG1997 RPL43A Ribosomal prote 57.0 5.6 0.00012 31.3 1.1 14 132-145 52-65 (89)
162 PRK09098 type III secretion sy 56.5 94 0.002 29.3 9.5 26 339-364 55-80 (233)
163 PF00430 ATP-synt_B: ATP synth 56.4 1.1E+02 0.0025 25.3 9.3 17 358-374 90-106 (132)
164 PF12777 MT: Microtubule-bindi 55.8 87 0.0019 31.3 9.7 52 336-387 48-99 (344)
165 TIGR02473 flagell_FliJ flagell 55.7 1.2E+02 0.0026 25.5 9.5 42 344-385 77-118 (141)
166 PRK09173 F0F1 ATP synthase sub 55.6 1.4E+02 0.0031 26.0 11.5 25 376-400 108-132 (159)
167 PRK15354 type III secretion sy 55.6 86 0.0019 29.0 8.5 19 341-359 48-66 (224)
168 PRK00539 atpC F0F1 ATP synthas 55.5 20 0.00042 30.8 4.3 13 365-377 114-126 (133)
169 KOG3654 Uncharacterized CH dom 55.4 79 0.0017 33.0 9.1 32 361-392 429-460 (708)
170 PF02892 zf-BED: BED zinc fing 55.3 9.5 0.00021 25.6 2.0 24 131-154 14-41 (45)
171 PRK09859 multidrug efflux syst 55.2 64 0.0014 32.6 8.8 33 354-386 135-167 (385)
172 COG1996 RPC10 DNA-directed RNA 55.1 6.1 0.00013 27.6 0.9 12 15-26 5-16 (49)
173 TIGR01144 ATP_synt_b ATP synth 55.1 1.4E+02 0.0029 25.6 11.4 17 358-374 86-102 (147)
174 COG4049 Uncharacterized protei 54.2 7.9 0.00017 27.7 1.4 30 93-129 13-42 (65)
175 PHA00448 hypothetical protein 53.7 91 0.002 23.2 7.4 37 323-359 14-50 (70)
176 COG3357 Predicted transcriptio 53.4 8.1 0.00017 30.6 1.4 15 15-29 57-71 (97)
177 PRK09578 periplasmic multidrug 53.1 1E+02 0.0022 31.2 9.9 31 355-385 138-168 (385)
178 TIGR00622 ssl1 transcription f 53.0 21 0.00045 29.7 3.8 91 57-183 2-105 (112)
179 KOG4124 Putative transcription 53.0 6.1 0.00013 38.9 0.9 63 14-76 347-418 (442)
180 PRK09859 multidrug efflux syst 52.8 74 0.0016 32.2 8.8 31 347-377 135-165 (385)
181 PRK15136 multidrug efflux syst 52.8 1.6E+02 0.0034 29.9 11.2 13 361-373 163-175 (390)
182 TIGR00570 cdk7 CDK-activating 52.6 1.8E+02 0.0039 28.6 10.9 22 365-386 166-187 (309)
183 PRK09173 F0F1 ATP synthase sub 52.6 1.6E+02 0.0034 25.7 10.9 7 368-374 103-109 (159)
184 KOG0742 AAA+-type ATPase [Post 52.3 1.1E+02 0.0024 31.6 9.4 36 352-387 205-250 (630)
185 PRK04023 DNA polymerase II lar 52.2 12 0.00025 42.3 2.9 14 393-406 1038-1051(1121)
186 PF00301 Rubredoxin: Rubredoxi 51.4 12 0.00025 26.0 1.8 42 17-65 2-43 (47)
187 cd03405 Band_7_HflC Band_7_Hfl 51.3 95 0.0021 28.9 8.8 44 340-385 181-224 (242)
188 smart00614 ZnF_BED BED zinc fi 50.8 10 0.00022 26.4 1.5 24 56-79 18-47 (50)
189 PLN02316 synthase/transferase 50.8 61 0.0013 37.3 8.4 23 341-363 260-282 (1036)
190 COG2811 NtpF Archaeal/vacuolar 50.3 1.4E+02 0.0031 24.5 10.1 38 325-362 18-56 (108)
191 PRK09578 periplasmic multidrug 50.2 81 0.0018 31.8 8.7 31 348-378 138-168 (385)
192 PRK01558 V-type ATP synthase s 49.8 1.9E+02 0.0041 26.4 10.2 34 339-375 27-60 (198)
193 smart00531 TFIIE Transcription 49.5 13 0.00027 32.4 2.3 36 52-104 95-130 (147)
194 COG0711 AtpF F0F1-type ATP syn 49.0 1.9E+02 0.0041 25.5 10.2 21 341-361 50-70 (161)
195 PRK07720 fliJ flagellar biosyn 48.9 1.7E+02 0.0037 25.0 9.5 40 346-385 82-121 (146)
196 PRK06266 transcription initiat 48.5 8 0.00017 34.9 0.9 31 52-104 113-143 (178)
197 KOG4173 Alpha-SNAP protein [In 48.2 8.5 0.00018 35.2 1.0 79 55-156 78-170 (253)
198 KOG2002 TPR-containing nuclear 48.0 1E+02 0.0022 34.9 9.1 40 346-385 841-880 (1018)
199 KOG1924 RhoA GTPase effector D 47.6 48 0.001 36.5 6.5 11 69-79 349-359 (1102)
200 PF10732 DUF2524: Protein of u 47.5 1.1E+02 0.0025 23.8 6.8 39 336-374 17-55 (84)
201 PTZ00121 MAEBL; Provisional 47.3 1.5E+02 0.0033 35.3 10.5 11 18-28 670-680 (2084)
202 PRK14154 heat shock protein Gr 47.2 71 0.0015 29.6 6.9 10 353-362 77-86 (208)
203 KOG1144 Translation initiation 47.2 1.1E+02 0.0023 34.0 8.9 22 352-373 255-276 (1064)
204 PRK10559 p-hydroxybenzoic acid 47.1 1E+02 0.0022 30.3 8.5 27 350-376 123-149 (310)
205 TIGR02926 AhaH ATP synthase ar 47.0 1.3E+02 0.0029 23.2 10.3 57 327-386 12-70 (85)
206 KOG0980 Actin-binding protein 46.7 3.9E+02 0.0085 30.2 13.1 28 346-373 362-389 (980)
207 KOG4377 Zn-finger protein [Gen 46.4 7.7 0.00017 39.1 0.4 25 161-185 402-429 (480)
208 PRK14145 heat shock protein Gr 46.4 78 0.0017 29.0 6.9 24 351-374 54-77 (196)
209 PTZ00121 MAEBL; Provisional 46.3 1.1E+02 0.0024 36.3 9.3 10 59-68 671-680 (2084)
210 PRK09098 type III secretion sy 45.6 2.7E+02 0.0058 26.3 11.9 17 387-403 112-128 (233)
211 PRK13452 atpC F0F1 ATP synthas 45.3 48 0.001 28.8 5.2 11 366-376 117-127 (145)
212 PF05266 DUF724: Protein of un 45.2 1.7E+02 0.0037 26.7 9.0 56 353-408 128-188 (190)
213 TIGR01144 ATP_synt_b ATP synth 45.2 2E+02 0.0042 24.6 10.4 14 379-392 104-117 (147)
214 PF05300 DUF737: Protein of un 45.0 2.4E+02 0.0053 25.6 11.0 17 340-356 96-112 (187)
215 TIGR02300 FYDLN_acid conserved 44.9 14 0.00031 31.2 1.8 13 132-144 25-37 (129)
216 KOG4124 Putative transcription 44.8 3.6 7.9E-05 40.4 -2.0 24 95-123 347-370 (442)
217 TIGR01933 hflK HflK protein. H 44.8 1.2E+02 0.0026 28.8 8.4 18 363-380 200-217 (261)
218 TIGR00373 conserved hypothetic 44.6 12 0.00025 33.1 1.3 33 50-104 103-135 (158)
219 PRK10930 FtsH protease regulat 44.6 2.1E+02 0.0045 29.6 10.5 11 364-374 297-307 (419)
220 TIGR00999 8a0102 Membrane Fusi 44.4 1E+02 0.0022 28.9 8.0 28 348-375 53-80 (265)
221 COG1773 Rubredoxin [Energy pro 44.4 26 0.00056 25.2 2.7 41 15-64 2-44 (55)
222 PRK00247 putative inner membra 44.2 1.6E+02 0.0034 30.5 9.5 32 352-383 349-380 (429)
223 cd03401 Band_7_prohibitin Band 44.2 54 0.0012 29.5 5.7 27 330-356 154-180 (196)
224 PF12128 DUF3584: Protein of u 44.1 1.5E+02 0.0032 35.1 10.5 37 345-381 486-522 (1201)
225 TIGR01932 hflC HflC protein. H 43.9 1.5E+02 0.0032 29.3 9.1 23 361-384 256-278 (317)
226 COG5222 Uncharacterized conser 43.6 2.1E+02 0.0046 27.9 9.5 16 95-110 272-287 (427)
227 COG1566 EmrA Multidrug resista 42.9 1.1E+02 0.0024 30.7 8.1 22 355-376 150-171 (352)
228 PF00401 ATP-synt_DE: ATP synt 42.7 25 0.00055 24.3 2.5 7 368-374 31-37 (48)
229 PRK09678 DNA-binding transcrip 42.6 11 0.00024 28.6 0.7 42 17-72 2-45 (72)
230 KOG3083 Prohibitin [Posttransl 42.2 40 0.00087 31.4 4.3 27 346-372 181-207 (271)
231 PRK00247 putative inner membra 42.2 1.4E+02 0.003 31.0 8.7 23 330-352 340-362 (429)
232 PRK14140 heat shock protein Gr 41.8 94 0.002 28.4 6.7 25 351-375 46-70 (191)
233 PRK14873 primosome assembly pr 41.8 17 0.00036 39.9 2.2 9 96-104 421-429 (665)
234 PF11839 DUF3359: Protein of u 41.8 1.9E+02 0.004 23.4 8.4 35 335-369 60-94 (96)
235 COG1538 TolC Outer membrane pr 41.6 2.1E+02 0.0047 29.4 10.4 32 355-386 198-229 (457)
236 PRK14139 heat shock protein Gr 41.6 74 0.0016 28.9 6.0 19 355-373 45-63 (185)
237 PF07795 DUF1635: Protein of u 41.6 1.7E+02 0.0037 27.2 8.3 31 346-376 23-53 (214)
238 PRK15136 multidrug efflux syst 41.4 1.3E+02 0.0027 30.7 8.4 10 368-377 163-172 (390)
239 COG0068 HypF Hydrogenase matur 41.3 14 0.00031 40.1 1.5 27 59-104 154-180 (750)
240 PRK11029 FtsH protease regulat 41.1 1.6E+02 0.0034 29.4 8.8 15 339-353 245-259 (334)
241 PRK10559 p-hydroxybenzoic acid 40.6 1.5E+02 0.0033 29.0 8.6 35 353-387 119-153 (310)
242 PRK11029 FtsH protease regulat 40.5 1.8E+02 0.0038 29.1 9.0 8 359-366 262-269 (334)
243 TIGR02473 flagell_FliJ flagell 40.5 1.4E+02 0.003 25.1 7.4 40 346-385 10-49 (141)
244 KOG0994 Extracellular matrix g 40.4 1.5E+02 0.0032 34.4 9.0 12 373-384 1689-1700(1758)
245 PRK14156 heat shock protein Gr 40.2 2.3E+02 0.0051 25.5 8.9 29 348-376 33-61 (177)
246 PF06524 NOA36: NOA36 protein; 39.9 12 0.00027 35.4 0.7 45 134-183 183-233 (314)
247 PF05443 ROS_MUCR: ROS/MUCR tr 39.6 18 0.00039 31.0 1.6 27 52-81 68-94 (132)
248 PLN03188 kinesin-12 family pro 39.5 1.7E+02 0.0036 34.4 9.5 61 340-400 1209-1271(1320)
249 PF01780 Ribosomal_L37ae: Ribo 39.4 9.7 0.00021 30.3 -0.0 31 15-67 34-64 (90)
250 PRK14153 heat shock protein Gr 39.4 1.3E+02 0.0029 27.5 7.3 12 362-373 53-64 (194)
251 PF05191 ADK_lid: Adenylate ki 39.3 20 0.00042 23.4 1.4 31 17-67 2-32 (36)
252 PTZ00255 60S ribosomal protein 39.0 13 0.00028 29.6 0.6 31 15-67 35-65 (90)
253 PF02731 SKIP_SNW: SKIP/SNW do 39.0 2.3E+02 0.005 25.0 8.4 24 335-358 117-140 (158)
254 PRK11578 macrolide transporter 38.6 2.2E+02 0.0048 28.5 9.7 10 353-362 148-157 (370)
255 KOG2689 Predicted ubiquitin re 38.5 1.5E+02 0.0032 28.6 7.6 17 361-377 157-173 (290)
256 PF10819 DUF2564: Protein of u 38.5 1.6E+02 0.0034 22.8 6.3 31 339-369 19-49 (79)
257 PRK11556 multidrug efflux syst 38.5 1.6E+02 0.0035 30.1 8.8 28 349-376 163-190 (415)
258 TIGR00595 priA primosomal prot 38.4 22 0.00048 37.5 2.5 9 97-105 240-248 (505)
259 PRK14158 heat shock protein Gr 38.0 1.5E+02 0.0033 27.1 7.5 8 354-361 66-73 (194)
260 PF09845 DUF2072: Zn-ribbon co 38.0 13 0.00028 31.6 0.5 15 16-30 1-15 (131)
261 PRK01005 V-type ATP synthase s 37.9 3.3E+02 0.0072 25.2 10.6 32 339-373 32-63 (207)
262 PF02255 PTS_IIA: PTS system, 37.7 2.1E+02 0.0046 22.9 7.6 41 339-379 10-51 (96)
263 PF12777 MT: Microtubule-bindi 37.6 1.4E+02 0.0031 29.7 8.0 43 332-374 58-100 (344)
264 PF07227 DUF1423: Protein of u 37.6 2E+02 0.0044 29.7 8.9 57 325-386 365-421 (446)
265 KOG2071 mRNA cleavage and poly 37.6 13 0.00029 39.3 0.6 31 14-44 416-446 (579)
266 TIGR01206 lysW lysine biosynth 37.2 23 0.0005 25.4 1.6 32 16-67 2-33 (54)
267 PRK14160 heat shock protein Gr 37.0 2.3E+02 0.0049 26.4 8.5 30 347-376 66-95 (211)
268 KOG2593 Transcription initiati 37.0 14 0.00031 37.6 0.7 18 55-72 127-144 (436)
269 PRK14148 heat shock protein Gr 36.9 1.6E+02 0.0036 26.9 7.5 24 351-374 49-72 (195)
270 PRK14143 heat shock protein Gr 36.8 1.6E+02 0.0034 28.0 7.6 11 353-363 92-102 (238)
271 PRK06669 fliH flagellar assemb 36.7 1.6E+02 0.0035 28.4 8.0 18 339-356 93-110 (281)
272 PRK14144 heat shock protein Gr 36.6 79 0.0017 29.1 5.4 6 355-360 72-77 (199)
273 smart00531 TFIIE Transcription 36.6 33 0.00071 29.8 2.8 39 93-143 95-133 (147)
274 TIGR00280 L37a ribosomal prote 36.5 14 0.0003 29.5 0.4 31 15-67 34-64 (91)
275 COG3364 Zn-ribbon containing p 36.3 23 0.0005 28.7 1.6 14 56-69 2-15 (112)
276 PF14446 Prok-RING_1: Prokaryo 36.3 19 0.0004 25.8 1.0 30 16-69 5-34 (54)
277 PF09726 Macoilin: Transmembra 36.3 2.6E+02 0.0056 31.0 10.2 43 340-382 479-521 (697)
278 cd03407 Band_7_4 A subgroup of 36.3 2.2E+02 0.0047 27.1 8.8 20 361-380 192-211 (262)
279 PF01096 TFIIS_C: Transcriptio 36.1 12 0.00026 24.8 -0.0 11 56-66 28-38 (39)
280 TIGR00373 conserved hypothetic 35.9 26 0.00056 30.9 2.1 33 93-142 105-137 (158)
281 PF05701 WEMBL: Weak chloropla 35.9 3.8E+02 0.0082 28.5 11.2 63 326-388 377-439 (522)
282 PRK07720 fliJ flagellar biosyn 35.8 1.8E+02 0.0038 24.9 7.4 22 353-374 20-41 (146)
283 PF04094 DUF390: Protein of un 35.8 2.7E+02 0.0058 30.6 9.8 23 368-390 552-574 (828)
284 PRK12380 hydrogenase nickel in 35.6 19 0.00041 29.9 1.1 14 16-29 70-83 (113)
285 TIGR03825 FliH_bacil flagellar 35.5 3.9E+02 0.0085 25.3 11.5 18 358-375 113-130 (255)
286 PF04959 ARS2: Arsenite-resist 35.2 25 0.00054 32.7 1.9 30 130-159 74-104 (214)
287 KOG1150 Predicted molecular ch 35.2 1.6E+02 0.0035 27.1 7.0 44 323-368 165-208 (250)
288 PF05443 ROS_MUCR: ROS/MUCR tr 34.6 23 0.0005 30.3 1.5 27 131-160 70-97 (132)
289 KOG1924 RhoA GTPase effector D 34.3 2.5E+02 0.0055 31.2 9.3 6 416-421 829-834 (1102)
290 PF01363 FYVE: FYVE zinc finge 34.3 20 0.00044 26.5 1.0 31 17-71 10-40 (69)
291 PRK06266 transcription initiat 33.5 23 0.00051 31.9 1.5 10 133-142 136-145 (178)
292 PF14353 CpXC: CpXC protein 33.5 17 0.00037 30.6 0.6 28 377-407 26-53 (128)
293 smart00734 ZnF_Rad18 Rad18-lik 33.5 38 0.00083 20.2 1.9 20 135-155 3-22 (26)
294 PRK02224 chromosome segregatio 33.3 2E+02 0.0044 32.5 9.3 25 380-404 439-463 (880)
295 PF14346 DUF4398: Domain of un 33.2 2.5E+02 0.0054 22.4 8.5 11 323-333 42-52 (103)
296 PF08790 zf-LYAR: LYAR-type C2 33.2 16 0.00036 22.4 0.3 20 17-37 1-20 (28)
297 KOG4167 Predicted DNA-binding 32.8 9.4 0.0002 41.3 -1.4 25 56-80 792-816 (907)
298 COG0068 HypF Hydrogenase matur 32.7 7.8 0.00017 42.0 -2.0 80 18-142 103-182 (750)
299 PF10252 PP28: Casein kinase s 32.7 1.4E+02 0.0031 23.3 5.4 19 352-370 52-70 (82)
300 KOG3654 Uncharacterized CH dom 32.4 1.8E+02 0.0038 30.5 7.5 42 340-387 422-463 (708)
301 PF01155 HypA: Hydrogenase exp 32.4 15 0.00033 30.4 0.0 14 17-30 71-84 (113)
302 PF01286 XPA_N: XPA protein N- 32.3 25 0.00055 22.6 1.1 13 18-30 5-17 (34)
303 COG3091 SprT Zn-dependent meta 32.3 21 0.00045 31.2 0.8 35 14-65 115-149 (156)
304 TIGR00823 EIIA-LAC phosphotran 32.1 2.5E+02 0.0054 22.7 7.1 45 336-380 10-55 (99)
305 PRK13443 atpC F0F1 ATP synthas 31.9 76 0.0016 27.3 4.3 39 341-381 95-133 (136)
306 cd03407 Band_7_4 A subgroup of 31.8 3.7E+02 0.008 25.5 9.6 14 358-371 178-191 (262)
307 PF05546 She9_MDM33: She9 / Md 31.5 1.8E+02 0.0038 26.9 6.7 45 346-390 36-80 (207)
308 KOG4167 Predicted DNA-binding 31.4 11 0.00024 40.7 -1.1 24 133-156 792-815 (907)
309 TIGR01069 mutS2 MutS2 family p 30.9 4.7E+02 0.01 29.4 11.3 9 361-369 570-578 (771)
310 TIGR01843 type_I_hlyD type I s 30.8 5.4E+02 0.012 25.7 11.2 24 351-374 198-221 (423)
311 smart00440 ZnF_C2C2 C2C2 Zinc 30.7 23 0.00049 23.6 0.7 12 56-67 28-39 (40)
312 PF07754 DUF1610: Domain of un 30.7 20 0.00043 21.2 0.3 10 15-24 15-24 (24)
313 PRK03976 rpl37ae 50S ribosomal 30.5 18 0.0004 28.7 0.2 31 15-67 35-65 (90)
314 cd00065 FYVE FYVE domain; Zinc 30.3 31 0.00068 24.3 1.4 28 18-69 4-31 (57)
315 PRK14151 heat shock protein Gr 30.3 1.8E+02 0.0039 26.2 6.6 9 353-361 45-53 (176)
316 PF15135 UPF0515: Uncharacteri 30.2 26 0.00056 33.1 1.2 22 8-29 104-125 (278)
317 PF13240 zinc_ribbon_2: zinc-r 29.9 30 0.00066 20.0 1.0 7 59-65 16-22 (23)
318 PRK03824 hypA hydrogenase nick 29.8 27 0.00058 30.0 1.1 15 15-29 69-83 (135)
319 PRK14873 primosome assembly pr 29.7 35 0.00076 37.4 2.2 10 133-142 422-431 (665)
320 KOG3408 U1-like Zn-finger-cont 29.6 31 0.00068 28.9 1.4 22 134-155 58-79 (129)
321 PRK03598 putative efflux pump 29.6 2.9E+02 0.0062 27.1 8.7 18 342-359 114-131 (331)
322 TIGR00595 priA primosomal prot 29.5 24 0.00052 37.3 0.9 19 126-144 233-251 (505)
323 TIGR00100 hypA hydrogenase nic 29.4 28 0.00061 28.9 1.2 14 16-29 70-83 (115)
324 COG5152 Uncharacterized conser 29.3 24 0.00052 32.1 0.8 11 16-26 196-206 (259)
325 KOG4326 Mitochondrial F1F0-ATP 29.2 1.8E+02 0.0039 22.0 5.2 28 338-365 36-63 (81)
326 KOG2785 C2H2-type Zn-finger pr 29.0 61 0.0013 32.6 3.6 133 16-155 3-242 (390)
327 COG1566 EmrA Multidrug resista 28.7 5.5E+02 0.012 25.8 10.4 15 373-387 193-207 (352)
328 TIGR00998 8a0101 efflux pump m 28.7 4.2E+02 0.0092 25.7 9.7 14 348-361 121-134 (334)
329 PF10883 DUF2681: Protein of u 28.7 1.7E+02 0.0037 23.1 5.4 30 348-377 29-58 (87)
330 COG3064 TolA Membrane protein 28.3 5.4E+02 0.012 25.5 9.6 8 339-346 134-141 (387)
331 PRK00432 30S ribosomal protein 28.3 34 0.00074 24.0 1.2 12 55-66 36-47 (50)
332 PRK00564 hypA hydrogenase nick 28.1 29 0.00063 29.0 1.1 14 16-29 71-84 (117)
333 COG1655 Uncharacterized protei 28.1 20 0.00042 33.5 0.0 19 14-32 17-35 (267)
334 PF07046 CRA_rpt: Cytoplasmic 28.0 1.9E+02 0.0041 19.3 5.8 29 323-351 4-32 (42)
335 PRK10930 FtsH protease regulat 27.8 2.7E+02 0.0059 28.7 8.2 11 344-354 280-290 (419)
336 PRK14157 heat shock protein Gr 27.7 1.9E+02 0.0041 27.2 6.4 14 341-354 108-121 (227)
337 PRK05580 primosome assembly pr 27.6 41 0.0009 37.0 2.4 9 97-105 408-416 (679)
338 KOG0742 AAA+-type ATPase [Post 27.6 6.1E+02 0.013 26.4 10.3 20 371-390 245-264 (630)
339 KOG2689 Predicted ubiquitin re 27.6 4.8E+02 0.01 25.2 9.1 25 347-371 132-156 (290)
340 smart00064 FYVE Protein presen 27.5 36 0.00078 25.0 1.4 28 17-68 11-38 (68)
341 PRK14141 heat shock protein Gr 27.5 2E+02 0.0044 26.6 6.5 9 354-362 57-65 (209)
342 smart00661 RPOL9 RNA polymeras 27.3 44 0.00096 23.0 1.7 13 56-68 20-32 (52)
343 PF06188 HrpE: HrpE/YscL/FliH 27.3 4.7E+02 0.01 23.7 10.3 10 325-334 42-51 (191)
344 KOG3507 DNA-directed RNA polym 27.2 32 0.00069 24.9 0.9 11 55-65 36-46 (62)
345 PF15186 TEX13: Testis-express 27.0 4.3E+02 0.0092 23.1 8.7 40 346-385 107-146 (152)
346 PRK14146 heat shock protein Gr 27.0 2.1E+02 0.0046 26.6 6.6 27 349-375 61-87 (215)
347 PF12999 PRKCSH-like: Glucosid 26.9 4.3E+02 0.0093 23.8 8.3 21 354-374 151-171 (176)
348 PRK09591 celC cellobiose phosp 26.8 3.5E+02 0.0076 22.0 7.9 46 335-380 12-58 (104)
349 PRK05689 fliJ flagellar biosyn 26.6 3E+02 0.0065 23.4 7.3 16 346-361 27-42 (147)
350 PRK06328 type III secretion sy 26.3 1.9E+02 0.0042 26.9 6.3 44 339-385 20-63 (223)
351 PRK12472 hypothetical protein; 26.1 2.2E+02 0.0049 29.7 7.1 29 346-374 229-257 (508)
352 KOG3083 Prohibitin [Posttransl 26.1 1.2E+02 0.0026 28.4 4.7 30 356-385 177-206 (271)
353 PRK00409 recombination and DNA 25.9 6E+02 0.013 28.6 11.1 11 368-378 575-585 (782)
354 PF09416 UPF1_Zn_bind: RNA hel 25.9 73 0.0016 28.0 3.1 49 56-106 14-69 (152)
355 PF08274 PhnA_Zn_Ribbon: PhnA 25.9 27 0.00059 21.8 0.4 10 56-65 19-28 (30)
356 PRK05689 fliJ flagellar biosyn 25.8 4.2E+02 0.009 22.5 9.3 40 346-385 82-121 (147)
357 PTZ00491 major vault protein; 25.6 3.2E+02 0.007 30.7 8.6 24 322-345 675-699 (850)
358 PRK03681 hypA hydrogenase nick 25.5 35 0.00076 28.3 1.1 13 16-28 70-82 (114)
359 PRK09915 putative outer membra 25.4 3.8E+02 0.0082 27.9 9.1 32 356-387 233-264 (488)
360 KOG3362 Predicted BBOX Zn-fing 25.3 28 0.0006 30.0 0.4 24 56-79 129-152 (156)
361 PF10097 DUF2335: Predicted me 25.3 1.4E+02 0.0031 20.9 3.9 14 346-359 16-29 (50)
362 PF11789 zf-Nse: Zinc-finger o 25.2 52 0.0011 23.7 1.8 34 55-105 23-56 (57)
363 KOG2593 Transcription initiati 25.2 41 0.00089 34.4 1.7 35 130-167 125-161 (436)
364 PHA00448 hypothetical protein 24.8 1.8E+02 0.004 21.7 4.5 8 347-354 20-27 (70)
365 KOG2441 mRNA splicing factor/p 24.8 7.6E+02 0.017 25.2 11.5 7 365-371 349-355 (506)
366 KOG1144 Translation initiation 24.7 4E+02 0.0087 29.8 8.9 34 350-383 260-293 (1064)
367 PRK10454 PTS system N,N'-diace 24.6 4.1E+02 0.0088 22.2 7.2 48 333-380 21-69 (115)
368 PRK11556 multidrug efflux syst 24.4 4.2E+02 0.009 27.1 9.0 32 355-386 162-193 (415)
369 PRK09039 hypothetical protein; 24.2 4.7E+02 0.01 26.1 9.0 31 346-376 155-185 (343)
370 TIGR01730 RND_mfp RND family e 24.0 4.5E+02 0.0098 25.1 8.9 26 350-375 103-128 (322)
371 PF02321 OEP: Outer membrane e 23.9 4.4E+02 0.0094 22.1 10.2 43 344-386 103-145 (188)
372 PF07975 C1_4: TFIIH C1-like d 23.5 27 0.00058 24.7 -0.0 26 54-79 19-44 (51)
373 PRK04351 hypothetical protein; 23.4 42 0.00092 29.3 1.2 33 16-68 112-144 (149)
374 PRK12722 transcriptional activ 23.3 43 0.00093 30.5 1.3 44 369-416 114-158 (187)
375 COG3677 Transposase and inacti 23.3 47 0.001 28.3 1.5 16 54-69 51-66 (129)
376 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.3 4.6E+02 0.0099 22.1 10.1 41 346-386 77-117 (132)
377 PF02731 SKIP_SNW: SKIP/SNW do 23.3 3.3E+02 0.0071 24.1 6.6 19 340-358 129-147 (158)
378 PF05529 Bap31: B-cell recepto 23.0 5.5E+02 0.012 23.0 8.6 26 354-382 159-184 (192)
379 KOG0977 Nuclear envelope prote 22.7 4.3E+02 0.0093 28.3 8.6 43 345-387 109-151 (546)
380 PF07795 DUF1635: Protein of u 22.7 4.2E+02 0.0091 24.7 7.6 22 348-369 39-60 (214)
381 PF12269 zf-CpG_bind_C: CpG bi 22.7 89 0.0019 29.5 3.3 19 388-406 80-98 (236)
382 PF04012 PspA_IM30: PspA/IM30 22.6 6E+02 0.013 23.2 9.3 46 341-386 97-142 (221)
383 PF15269 zf-C2H2_7: Zinc-finge 22.6 50 0.0011 22.6 1.1 23 57-79 21-43 (54)
384 cd00215 PTS_IIA_lac PTS_IIA, P 22.6 4.1E+02 0.0089 21.3 7.1 22 357-378 30-51 (97)
385 CHL00063 atpE ATP synthase CF1 22.5 1.3E+02 0.0028 25.7 4.1 16 358-373 112-127 (134)
386 PF10732 DUF2524: Protein of u 22.5 3E+02 0.0064 21.5 5.5 41 322-362 17-57 (84)
387 PTZ00491 major vault protein; 22.4 5.5E+02 0.012 29.0 9.6 11 368-378 772-782 (850)
388 PF07282 OrfB_Zn_ribbon: Putat 22.4 52 0.0011 24.2 1.4 18 54-71 44-61 (69)
389 PF07946 DUF1682: Protein of u 22.3 4.5E+02 0.0099 25.9 8.4 9 284-292 217-225 (321)
390 PF08317 Spc7: Spc7 kinetochor 22.2 7.5E+02 0.016 24.4 10.0 35 346-380 234-268 (325)
391 PRK05580 primosome assembly pr 22.1 64 0.0014 35.5 2.6 16 127-142 402-417 (679)
392 COG1447 CelC Phosphotransferas 22.1 3.4E+02 0.0074 22.3 6.1 41 339-379 15-56 (105)
393 COG4957 Predicted transcriptio 21.9 52 0.0011 28.1 1.4 23 55-80 75-97 (148)
394 KOG0977 Nuclear envelope prote 21.9 5.8E+02 0.013 27.3 9.3 40 344-383 157-196 (546)
395 PF09726 Macoilin: Transmembra 21.8 6.4E+02 0.014 28.0 10.1 21 335-355 493-513 (697)
396 PRK13450 atpC F0F1 ATP synthas 21.6 1.3E+02 0.0028 25.6 3.9 32 345-377 92-125 (132)
397 PRK14065 exodeoxyribonuclease 21.3 1.9E+02 0.0042 22.6 4.3 28 342-369 53-80 (86)
398 PF01927 Mut7-C: Mut7-C RNAse 21.1 76 0.0016 27.5 2.4 21 55-75 123-143 (147)
399 KOG2264 Exostosin EXT1L [Signa 21.1 5.7E+02 0.012 27.5 8.8 57 321-377 86-149 (907)
400 PF15290 Syntaphilin: Golgi-lo 21.0 7.6E+02 0.016 24.0 9.0 40 335-374 87-135 (305)
401 TIGR01554 major_cap_HK97 phage 21.0 4.4E+02 0.0096 26.4 8.3 29 346-374 31-59 (378)
402 TIGR03831 YgiT_finger YgiT-typ 20.9 26 0.00055 23.4 -0.5 14 55-68 31-44 (46)
403 PF14943 MRP-S26: Mitochondria 20.9 6.1E+02 0.013 22.7 10.0 33 353-385 96-128 (170)
404 KOG1280 Uncharacterized conser 20.8 1.1E+02 0.0024 30.4 3.6 65 16-80 23-103 (381)
405 PF04959 ARS2: Arsenite-resist 20.8 76 0.0017 29.5 2.4 30 93-129 73-102 (214)
406 PF15135 UPF0515: Uncharacteri 20.7 92 0.002 29.5 2.9 59 93-171 108-167 (278)
407 PF07139 DUF1387: Protein of u 20.7 6.6E+02 0.014 24.7 8.8 32 336-367 223-254 (302)
408 PF11180 DUF2968: Protein of u 20.7 6.5E+02 0.014 23.0 9.3 13 323-335 91-103 (192)
409 PF04094 DUF390: Protein of un 20.7 8E+02 0.017 27.2 10.1 32 356-387 554-585 (828)
410 KOG2357 Uncharacterized conser 20.6 2.9E+02 0.0064 28.3 6.5 55 330-392 358-416 (440)
411 PF10013 DUF2256: Uncharacteri 20.5 67 0.0015 21.7 1.4 15 58-72 10-24 (42)
412 PF07800 DUF1644: Protein of u 20.4 4.1E+02 0.0089 23.5 6.6 38 39-79 12-49 (162)
413 PRK06669 fliH flagellar assemb 20.3 7.7E+02 0.017 23.6 11.8 29 374-402 152-180 (281)
414 cd07666 BAR_SNX7 The Bin/Amphi 20.1 3.3E+02 0.0072 25.9 6.6 25 349-373 163-187 (243)
415 PF08285 DPM3: Dolichol-phosph 20.1 1.3E+02 0.0029 23.9 3.3 21 340-360 66-86 (91)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.93 E-value=6.7e-27 Score=216.13 Aligned_cols=136 Identities=23% Similarity=0.461 Sum_probs=122.9
Q ss_pred CCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCccc
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVV 93 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 93 (426)
.-.|+|.+|||.+....+|-.|.+.|..- ...+.+.|++|||.|.....|++|+|+|
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~~---------~s~ka~~C~~C~K~YvSmpALkMHirTH-------------- 184 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRSL---------DSKKAFSCKYCGKVYVSMPALKMHIRTH-------------- 184 (279)
T ss_pred CCceeccccccccccccccchhhcccccc---------cccccccCCCCCceeeehHHHhhHhhcc--------------
Confidence 34699999999999999977777766432 1246799999999999999999999999
Q ss_pred cCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHc-CCCCeecc-CCcccCC
Q 037502 94 RKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTC-GTRGHSCD-CGRVFSR 171 (426)
Q Consensus 94 ~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h-~~kp~~C~-Cgk~F~~ 171 (426)
.-+++|.+|| |.|.+..-|+-|+ |+|+|||||.|..|+|+|++.++|+.||+|| +.|+|.|. |+|+|..
T Consensus 185 -~l~c~C~iCG-------KaFSRPWLLQGHi-RTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 185 -TLPCECGICG-------KAFSRPWLLQGHI-RTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred -CCCccccccc-------ccccchHHhhccc-ccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 4689999999 9999999999995 8999999999999999999999999999996 89999996 9999999
Q ss_pred hhhHHHHHHH
Q 037502 172 VESFIEHQDA 181 (426)
Q Consensus 172 ~~~L~~H~r~ 181 (426)
.+.|.+|...
T Consensus 256 ~SyLnKH~ES 265 (279)
T KOG2462|consen 256 KSYLNKHSES 265 (279)
T ss_pred HHHHHHhhhh
Confidence 9999999875
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.84 E-value=1.2e-21 Score=181.48 Aligned_cols=116 Identities=27% Similarity=0.426 Sum_probs=103.7
Q ss_pred CCCCCCCCC---CCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccC
Q 037502 5 NSPSAIPCS---SEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKV 81 (426)
Q Consensus 5 ~~~~~~~~~---~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~ 81 (426)
..|...|.. .+.|.|++|||.|..-..|.+| ++||+ -+++|.+|||.|.+...|+-|+|+|
T Consensus 147 srHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMH------------irTH~--l~c~C~iCGKaFSRPWLLQGHiRTH-- 210 (279)
T KOG2462|consen 147 SRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMH------------IRTHT--LPCECGICGKAFSRPWLLQGHIRTH-- 210 (279)
T ss_pred chhhcccccccccccccCCCCCceeeehHHHhhH------------hhccC--CCcccccccccccchHHhhcccccc--
Confidence 567777654 5689999999999998875555 45555 5899999999999999999999999
Q ss_pred ccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHH
Q 037502 82 PWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 82 ~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
+|||||.|+.|+ +.|.+.++|..| +.+|++.|+|.|..|+|.|+..+.|.+|...
T Consensus 211 -----------TGEKPF~C~hC~-------kAFADRSNLRAH-mQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 211 -----------TGEKPFSCPHCG-------KAFADRSNLRAH-MQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred -----------cCCCCccCCccc-------chhcchHHHHHH-HHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 899999999999 999999999999 5899999999999999999999999999887
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.76 E-value=9.4e-20 Score=188.84 Aligned_cols=85 Identities=20% Similarity=0.470 Sum_probs=75.5
Q ss_pred ceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHcCCCC-----eecc----CCc
Q 037502 97 VFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRG-----HSCD----CGR 167 (426)
Q Consensus 97 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~kp-----~~C~----Cgk 167 (426)
+..|-+|- ++..-.+.|+.|+ |+|+|||||+|.+||++|+.+.+|+.|+-+|.-+| |.|. |-+
T Consensus 605 PNqCiiC~-------rVlSC~saLqmHy-rtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~ 676 (958)
T KOG1074|consen 605 PNQCIICL-------RVLSCPSALQMHY-RTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQK 676 (958)
T ss_pred ccceeeee-------ecccchhhhhhhh-hcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhcc
Confidence 57888887 8999999999996 89999999999999999999999999999986654 7884 999
Q ss_pred ccCChhhHHHHHHHhcCCCCCC
Q 037502 168 VFSRVESFIEHQDACSKGHIRS 189 (426)
Q Consensus 168 ~F~~~~~L~~H~r~h~~~~~~~ 189 (426)
.|.....|..|+++|.++....
T Consensus 677 kftn~V~lpQhIriH~~~~~s~ 698 (958)
T KOG1074|consen 677 KFTNAVTLPQHIRIHLGGQISN 698 (958)
T ss_pred cccccccccceEEeecCCCCCC
Confidence 9999999999999998765443
No 4
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.68 E-value=8.7e-18 Score=159.36 Aligned_cols=150 Identities=18% Similarity=0.366 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccc
Q 037502 5 NSPSAIPCSSEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWK 84 (426)
Q Consensus 5 ~~~~~~~~~~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~ 84 (426)
..|.+.|+++|--.|+.||..|+++..|..|.++ ++-....+|.|..|.|.|.++..|++|++.|
T Consensus 196 reH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rR----------qt~l~~n~fqC~~C~KrFaTeklL~~Hv~rH----- 260 (467)
T KOG3608|consen 196 REHIRTHSNEKVVACPHCGELFRTKTKLFDHLRR----------QTELNTNSFQCAQCFKRFATEKLLKSHVVRH----- 260 (467)
T ss_pred HHHHHhcCCCeEEecchHHHHhccccHHHHHHHh----------hhhhcCCchHHHHHHHHHhHHHHHHHHHHHh-----
Confidence 4678889999999999999999999987777643 2333445899999999999999999999999
Q ss_pred cccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHcCCCCeecc
Q 037502 85 LLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCD 164 (426)
Q Consensus 85 ~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C~ 164 (426)
..-|+|+.|+ -+.+..+.|..|++-.|+.+|||+|+.|++.|.+.++|.+|..+|.+--|.|+
T Consensus 261 ----------vn~ykCplCd-------mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~ 323 (467)
T KOG3608|consen 261 ----------VNCYKCPLCD-------MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCE 323 (467)
T ss_pred ----------hhcccccccc-------cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecC
Confidence 5689999988 88889999999998899999999999999999999999999999888889994
Q ss_pred ---CCcccCChhhHHHHHHHhcCCC
Q 037502 165 ---CGRVFSRVESFIEHQDACSKGH 186 (426)
Q Consensus 165 ---Cgk~F~~~~~L~~H~r~h~~~~ 186 (426)
|..+|.....+++|++.++.+.
T Consensus 324 h~~C~~s~r~~~q~~~H~~evhEg~ 348 (467)
T KOG3608|consen 324 HPDCHYSVRTYTQMRRHFLEVHEGN 348 (467)
T ss_pred CCCCcHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999998876443
No 5
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.66 E-value=2.4e-17 Score=171.12 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=51.9
Q ss_pred cccccCCCcccChhhHHHHHHH-cCCCCeecc-CCcccCChhhHHHHHHHhcCCCCCC
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT-CGTRGHSCD-CGRVFSRVESFIEHQDACSKGHIRS 189 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~-h~~kp~~C~-Cgk~F~~~~~L~~H~r~h~~~~~~~ 189 (426)
+.|.+||+.|.....|..|+++ +|+|||.|. |++.|..+.+|+.||.+|....+.+
T Consensus 880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~s 937 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPS 937 (958)
T ss_pred hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCc
Confidence 7899999999999999999999 599999998 9999999999999999998776544
No 6
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.65 E-value=4.5e-17 Score=143.93 Aligned_cols=111 Identities=23% Similarity=0.525 Sum_probs=102.0
Q ss_pred CCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCc
Q 037502 54 SDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQ 133 (426)
Q Consensus 54 ~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~ 133 (426)
...|.|.+|||.|....-|.+|++-| ...+.|-|..|| +.|.+.+.|++| .|+|+|-+|
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch-------------~~vkr~lct~cg-------kgfndtfdlkrh-~rthtgvrp 173 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCH-------------SDVKRHLCTFCG-------KGFNDTFDLKRH-TRTHTGVRP 173 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhc-------------cHHHHHHHhhcc-------Ccccchhhhhhh-hccccCccc
Confidence 46699999999999999999999999 678899999999 999999999999 599999999
Q ss_pred cccccCCCcccChhhHHHHHHH-cCC-----------CCeecc-CCcccCChhhHHHHHHHhcCC
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT-CGT-----------RGHSCD-CGRVFSRVESFIEHQDACSKG 185 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~-h~~-----------kp~~C~-Cgk~F~~~~~L~~H~r~h~~~ 185 (426)
|+|..|+|+|++.-+|..|++. ||. |.|.|+ ||.+-.....+..|++.|+-.
T Consensus 174 ykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 174 YKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred cchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 9999999999999999999998 853 679995 999999999999999987543
No 7
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.58 E-value=2.9e-16 Score=138.80 Aligned_cols=114 Identities=24% Similarity=0.471 Sum_probs=102.8
Q ss_pred CCCCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCc
Q 037502 12 CSSEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETP 91 (426)
Q Consensus 12 ~~~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~ 91 (426)
.+...|.|.+|||.|....- |.+|++-|...+.|-|..|||+|...-.|++|+|+|
T Consensus 113 sd~d~ftCrvCgK~F~lQRm------------lnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rth------------ 168 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRM------------LNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTH------------ 168 (267)
T ss_pred CCCCeeeeehhhhhhhHHHH------------HHHHhhhccHHHHHHHhhccCcccchhhhhhhhccc------------
Confidence 34557999999999988774 778888888889999999999999999999999999
Q ss_pred cccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC----------CCCccccccCCCcccChhhHHHHHHH-cC
Q 037502 92 VVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS----------NHKQWVCEKCSKGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 92 ~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~----------~~k~~~C~~C~k~f~~~~~L~~H~~~-h~ 157 (426)
+|.+||+|..|+ +.|...-.|..|++++|. ..|-|+|+.||..-.....+..|++. |.
T Consensus 169 -tgvrpykc~~c~-------kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 169 -TGVRPYKCSLCE-------KAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred -cCccccchhhhh-------HHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 899999999999 999999999999998885 36789999999999999999999998 53
No 8
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.41 E-value=8.2e-14 Score=142.87 Aligned_cols=107 Identities=22% Similarity=0.524 Sum_probs=93.4
Q ss_pred ccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC------
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS------ 129 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~------ 129 (426)
...|..|+++|.+...|+.|++.-+. ..+..|.|..|. .+|.....|.+|+ .+|.
T Consensus 210 lltcpycdrgykrltslkeHikyrhe-----------kne~nfsC~lCs-------ytFAyRtQLErhm-~~hkpg~dqa 270 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHE-----------KNEPNFSCMLCS-------YTFAYRTQLERHM-QLHKPGGDQA 270 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHh-----------hCCCCCcchhhh-------hhhhhHHHHHHHH-HhhcCCCccc
Confidence 36799999999999999999874321 456679999998 9999999999995 5663
Q ss_pred -------CCCccccccCCCcccChhhHHHHHHHc-CCCCeecc-CCcccCChhhHHHHHHH
Q 037502 130 -------NHKQWVCEKCSKGYAVQSDYKAHLKTC-GTRGHSCD-CGRVFSRVESFIEHQDA 181 (426)
Q Consensus 130 -------~~k~~~C~~C~k~f~~~~~L~~H~~~h-~~kp~~C~-Cgk~F~~~~~L~~H~r~ 181 (426)
+.+.|+|.+|||+|..+-.|+.|+|+| |+|||.|. |+|.|+...++..||-.
T Consensus 271 ~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 271 ISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred ccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence 246799999999999999999999996 99999996 99999999999999853
No 9
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.38 E-value=1.3e-13 Score=131.20 Aligned_cols=138 Identities=19% Similarity=0.328 Sum_probs=118.7
Q ss_pred CCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCccc
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVV 93 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 93 (426)
..+|.|..|.|.|....-|.+|++.| .. -|+|+.|+.+....+.|..|++.-| .
T Consensus 235 ~n~fqC~~C~KrFaTeklL~~Hv~rH------------vn--~ykCplCdmtc~~~ssL~~H~r~rH------------s 288 (467)
T KOG3608|consen 235 TNSFQCAQCFKRFATEKLLKSHVVRH------------VN--CYKCPLCDMTCSSASSLTTHIRYRH------------S 288 (467)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHh------------hh--cccccccccCCCChHHHHHHHHhhh------------c
Confidence 35999999999999999766665433 32 5999999999999999999999665 6
Q ss_pred cCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCcccccc--CCCcccChhhHHHHHHH-c---CCCCeecc-CC
Q 037502 94 RKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEK--CSKGYAVQSDYKAHLKT-C---GTRGHSCD-CG 166 (426)
Q Consensus 94 ~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~-h---~~kp~~C~-Cg 166 (426)
.+|||+|..|+ ..|.+.+.|.+|. .+|+ +-.|.|+. |..+|.....+++|++- | ..-+|.|. |.
T Consensus 289 ~dkpfKCd~Cd-------~~c~~esdL~kH~-~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cd 359 (467)
T KOG3608|consen 289 KDKPFKCDECD-------TRCVRESDLAKHV-QVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCD 359 (467)
T ss_pred cCCCccccchh-------hhhccHHHHHHHH-Hhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecch
Confidence 79999999998 9999999999996 5887 77899987 99999999999999998 6 34569996 99
Q ss_pred cccCChhhHHHHHHHhcCCC
Q 037502 167 RVFSRVESFIEHQDACSKGH 186 (426)
Q Consensus 167 k~F~~~~~L~~H~r~h~~~~ 186 (426)
+.|.+-.+|..|+..-++-+
T Consensus 360 r~ft~G~~L~~HL~kkH~f~ 379 (467)
T KOG3608|consen 360 RFFTSGKSLSAHLMKKHGFR 379 (467)
T ss_pred hhhccchhHHHHHHHhhccc
Confidence 99999999999987655544
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.37 E-value=1.3e-13 Score=141.47 Aligned_cols=77 Identities=22% Similarity=0.559 Sum_probs=43.2
Q ss_pred CcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHc-CCCCeecc-CCcccCCh
Q 037502 95 KRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTC-GTRGHSCD-CGRVFSRV 172 (426)
Q Consensus 95 ~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h-~~kp~~C~-Cgk~F~~~ 172 (426)
+.+|.|+.|+ +.|...+.|.+| +-.|+|.+||.|.+|.|+|..+-.|..|+|.| |+|||.|+ |+|.|+..
T Consensus 892 ~gmyaCDqCD-------K~FqKqSSLaRH-KYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPfQCdKClKRFSHS 963 (1007)
T KOG3623|consen 892 DGMYACDQCD-------KAFQKQSSLARH-KYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPFQCDKCLKRFSHS 963 (1007)
T ss_pred cccchHHHHH-------HHHHhhHHHHHh-hhhhcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcchhhhhhhhcccc
Confidence 4455555554 555555555555 44555555555555555555555555555553 55555554 55555555
Q ss_pred hhHHHHH
Q 037502 173 ESFIEHQ 179 (426)
Q Consensus 173 ~~L~~H~ 179 (426)
.++..||
T Consensus 964 GSYSQHM 970 (1007)
T KOG3623|consen 964 GSYSQHM 970 (1007)
T ss_pred cchHhhh
Confidence 5555555
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.22 E-value=2.8e-11 Score=125.31 Aligned_cols=106 Identities=24% Similarity=0.449 Sum_probs=88.4
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCC
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNH 131 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~ 131 (426)
.-++.+.|+.||+.|. ...|..|+++| .++|.|+ || ..+ ....|..| +++|.+.
T Consensus 449 el~~H~~C~~Cgk~f~-~s~LekH~~~~---------------Hkpv~Cp-Cg-------~~~-~R~~L~~H-~~thCp~ 502 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQ-QGEMEKHMKVF---------------HEPLQCP-CG-------VVL-EKEQMVQH-QASTCPL 502 (567)
T ss_pred ccccCccCCCCCCccc-hHHHHHHHHhc---------------CCCccCC-CC-------CCc-chhHHHhh-hhccCCC
Confidence 3356689999999996 68899999998 2689999 87 655 56899999 5889999
Q ss_pred CccccccCCCccc----------ChhhHHHHHHHcCCCCeecc-CCcccCChhhHHHHHHHhcC
Q 037502 132 KQWVCEKCSKGYA----------VQSDYKAHLKTCGTRGHSCD-CGRVFSRVESFIEHQDACSK 184 (426)
Q Consensus 132 k~~~C~~C~k~f~----------~~~~L~~H~~~h~~kp~~C~-Cgk~F~~~~~L~~H~r~h~~ 184 (426)
+++.|.+|++.|. ..+.|..|..++|.+++.|. ||+.|.. ..|..|+..++.
T Consensus 503 Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~ 565 (567)
T PLN03086 503 RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVML-KEMDIHQIAVHQ 565 (567)
T ss_pred CceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeee-hhHHHHHHHhhc
Confidence 9999999999995 24589999999999999997 9999955 467888877654
No 12
>PHA00733 hypothetical protein
Probab=98.86 E-value=1.6e-09 Score=92.42 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCCccccccCCcccCCchhHHHH--hhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCC
Q 037502 53 ESDRYVCEICNQGFQRDQNLQMH--RRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSN 130 (426)
Q Consensus 53 ~~~py~C~~Cgk~F~~~~~L~~H--~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~ 130 (426)
+.+++.|.+|++.|.....|..| ++.|. ...+.++|.|+.|+ +.|.....|..|+ +.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~Cg-------k~Fss~s~L~~H~-r~h-- 96 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLCL-------MPFSSSVSLKQHI-RYT-- 96 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCCC-------CcCCCHHHHHHHH-hcC--
Confidence 45678888888888877777666 22221 11347788999988 8888888888884 556
Q ss_pred CCccccccCCCcccChhhHHHHHHH-cC
Q 037502 131 HKQWVCEKCSKGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 131 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~ 157 (426)
+.+|.|.+|++.|.....|..|+.. |+
T Consensus 97 ~~~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 97 EHSKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence 3468999999999999999999887 65
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.82 E-value=3.7e-09 Score=109.68 Aligned_cols=104 Identities=13% Similarity=0.307 Sum_probs=80.4
Q ss_pred CCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCccc
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVV 93 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~ 93 (426)
++.+.|..||+.|.. .. +..|.++|. ++|.|. ||+.| ....|..|+++| .
T Consensus 451 ~~H~~C~~Cgk~f~~-s~------------LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~th-------------C 500 (567)
T PLN03086 451 KNHVHCEKCGQAFQQ-GE------------MEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQAST-------------C 500 (567)
T ss_pred ccCccCCCCCCccch-HH------------HHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhcc-------------C
Confidence 345667777776642 32 677777764 789999 99866 568999999999 6
Q ss_pred cCcceeCCCCCCCCCCcccccC----------CHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHH-cC
Q 037502 94 RKRVFVCPEPSCLHHDPCHALG----------DLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 94 ~~k~~~C~~C~c~~~~~~~~f~----------~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~ 157 (426)
.++++.|+.|+ ..|. ....|..|. ..+ |.+++.|..||+.|.. ..+..|+.. |.
T Consensus 501 p~Kpi~C~fC~-------~~v~~g~~~~d~~d~~s~Lt~HE-~~C-G~rt~~C~~Cgk~Vrl-rdm~~H~~~~h~ 565 (567)
T PLN03086 501 PLRLITCRFCG-------DMVQAGGSAMDVRDRLRGMSEHE-SIC-GSRTAPCDSCGRSVML-KEMDIHQIAVHQ 565 (567)
T ss_pred CCCceeCCCCC-------CccccCccccchhhhhhhHHHHH-Hhc-CCcceEccccCCeeee-hhHHHHHHHhhc
Confidence 79999999998 6664 246899994 554 9999999999999885 467889877 53
No 14
>PHA00733 hypothetical protein
Probab=98.74 E-value=1.1e-08 Score=87.34 Aligned_cols=84 Identities=13% Similarity=0.301 Sum_probs=61.9
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHH--HH--hhhCCCCccccccCCCcccChhhHHHHHHHcCCCCeecc-CCc
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKH--FR--RKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCD-CGR 167 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H--~~--r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C~-Cgk 167 (426)
...+++.|.+|. ..|.....|..| +. ..+.+.+||.|+.||+.|.....|..|++.+ +.+|.|. |++
T Consensus 36 ~~~~~~~~~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK 107 (128)
T PHA00733 36 PEQKRLIRAVVK-------TLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGK 107 (128)
T ss_pred hhhhhHHHHHHh-------hhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCC
Confidence 346778888876 566665555544 11 1234578899999999999999999888875 4578896 999
Q ss_pred ccCChhhHHHHHHHhcC
Q 037502 168 VFSRVESFIEHQDACSK 184 (426)
Q Consensus 168 ~F~~~~~L~~H~r~h~~ 184 (426)
.|.....|..|+...++
T Consensus 108 ~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 108 EFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCHHHHHHHHHHhcC
Confidence 99999999999876554
No 15
>PHA02768 hypothetical protein; Provisional
Probab=98.57 E-value=2.7e-08 Score=70.79 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=23.3
Q ss_pred cccccCCCcccChhhHHHHHHHcCCCCeecc-CCcccCChhhH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKTCGTRGHSCD-CGRVFSRVESF 175 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C~-Cgk~F~~~~~L 175 (426)
|.|+.||+.|++.++|..|+++|. ++|.|. |++.|.+.+.|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceeccccee
Confidence 556666666666666666666644 455563 66666555444
No 16
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.46 E-value=4.2e-08 Score=96.10 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=101.5
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccc---------
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLL--------- 86 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~--------- 86 (426)
.|.|..|...|.+...|..|. -.-+----|+|.+|+|.|+...||..|+|.|. +.+..
T Consensus 267 dyiCqLCK~kYeD~F~LAQHr------------C~RIV~vEYrCPEC~KVFsCPANLASHRRWHK-PR~eaa~a~~~P~k 333 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHR------------CPRIVHVEYRCPECDKVFSCPANLASHRRWHK-PRPEAAKAGSPPPK 333 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhcc------------CCeeEEeeecCCcccccccCchhhhhhhcccC-CchhhhhcCCCChh
Confidence 599999999999988866664 11111123999999999999999999999995 11110
Q ss_pred ------------cccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC-CCC---------------------
Q 037502 87 ------------KRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS-NHK--------------------- 132 (426)
Q Consensus 87 ------------~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~-~~k--------------------- 132 (426)
.+......+..|.|.+|+ +.|.+...|++|. .+|. ..+
T Consensus 334 ~~~~~rae~~ea~rsg~dss~gi~~C~~C~-------KkFrRqAYLrKHq-lthq~~~~~k~~a~~f~~s~~~~l~~~~~ 405 (500)
T KOG3993|consen 334 QAVETRAEVQEAERSGDDSSSGIFSCHTCG-------KKFRRQAYLRKHQ-LTHQRAPLAKEKAPKFLLSRVIPLMHFNQ 405 (500)
T ss_pred hhhhhhhhhhhccccCCcccCceeecHHhh-------hhhHHHHHHHHhH-HhhhccccchhcccCcchhhccccccccc
Confidence 001111334589999999 9999999999994 4442 100
Q ss_pred ------------------------ccccccCCCcccChhhHHHHHHH-cCCCCeecc-CCcccCChhhHHHHHHHhcCC
Q 037502 133 ------------------------QWVCEKCSKGYAVQSDYKAHLKT-CGTRGHSCD-CGRVFSRVESFIEHQDACSKG 185 (426)
Q Consensus 133 ------------------------~~~C~~C~k~f~~~~~L~~H~~~-h~~kp~~C~-Cgk~F~~~~~L~~H~r~h~~~ 185 (426)
-..|..||-.+..+..--.|.+. +.+..|.|+ |.-.|...-.|.+|...++-.
T Consensus 406 ~~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps 484 (500)
T KOG3993|consen 406 AVATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS 484 (500)
T ss_pred ccccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence 12344555555554444444444 455668897 999999999999998776543
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.33 E-value=2.7e-07 Score=65.72 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=39.4
Q ss_pred ceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHH
Q 037502 97 VFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYK 150 (426)
Q Consensus 97 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~ 150 (426)
-|.|+.|| +.|...++|..| +++|+ ++|+|..|++.|.+.+.|.
T Consensus 5 ~y~C~~CG-------K~Fs~~~~L~~H-~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICG-------EIYIKRKSMITH-LRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhC-------CeeccHHHHHHH-HHhcC--CcccCCcccceecccceeE
Confidence 48999999 999999999999 58887 7999999999999887764
No 18
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.14 E-value=1.4e-06 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.809 Sum_probs=21.5
Q ss_pred HHHHHHHhhhCCCCccccccCCCcccC
Q 037502 119 GIKKHFRRKHSNHKQWVCEKCSKGYAV 145 (426)
Q Consensus 119 ~l~~H~~r~H~~~k~~~C~~C~k~f~~ 145 (426)
+|..|+ ++|+|+|||.|+.|++.|..
T Consensus 1 ~l~~H~-~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHM-RTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHH-HHHSSSSSEEESSSSEEESS
T ss_pred CHHHHh-hhcCCCCCCCCCCCcCeeCc
Confidence 478884 68999999999999998863
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.05 E-value=6.9e-07 Score=54.23 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.9
Q ss_pred hccCccccCCCCccccccCCcccCC
Q 037502 44 VSLSPKTLLESDRYVCEICNQGFQR 68 (426)
Q Consensus 44 l~~h~~~h~~~~py~C~~Cgk~F~~ 68 (426)
|..|+++|++++||+|+.|++.|.+
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 6788999999999999999999863
No 20
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.93 E-value=1.7e-06 Score=84.99 Aligned_cols=82 Identities=22% Similarity=0.464 Sum_probs=67.5
Q ss_pred cceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHcCCC----------------
Q 037502 96 RVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTR---------------- 159 (426)
Q Consensus 96 k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~k---------------- 159 (426)
..|.|..|. ..|.+.+.|-+| +-.-...--|+|.+|+|.|+-..+|..|.|+|.-|
T Consensus 266 GdyiCqLCK-------~kYeD~F~LAQH-rC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~ 337 (500)
T KOG3993|consen 266 GDYICQLCK-------EKYEDAFALAQH-RCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVE 337 (500)
T ss_pred HHHHHHHHH-------HhhhhHHHHhhc-cCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhh
Confidence 359999998 899999999999 43222234599999999999999999999987211
Q ss_pred ------------------Ceecc-CCcccCChhhHHHHHHHhcCC
Q 037502 160 ------------------GHSCD-CGRVFSRVESFIEHQDACSKG 185 (426)
Q Consensus 160 ------------------p~~C~-Cgk~F~~~~~L~~H~r~h~~~ 185 (426)
.|.|. |+|.|.+...|++|+-+|+..
T Consensus 338 ~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 338 TRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred hhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 38896 999999999999999998654
No 21
>PHA00616 hypothetical protein
Probab=97.80 E-value=9.8e-06 Score=55.03 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=21.1
Q ss_pred ccccccCCCcccChhhHHHHHHH-cCCCCeecc
Q 037502 133 QWVCEKCSKGYAVQSDYKAHLKT-CGTRGHSCD 164 (426)
Q Consensus 133 ~~~C~~C~k~f~~~~~L~~H~~~-h~~kp~~C~ 164 (426)
||.|..||+.|.+.++|..|++. ||++++.|+
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 46666666666666666666666 666666664
No 22
>PHA00732 hypothetical protein
Probab=97.73 E-value=2.2e-05 Score=61.00 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=29.5
Q ss_pred ceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHH
Q 037502 97 VFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 97 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
||.|..|+ +.|.+...|..|++..|. ++.|+.||+.|. .|..|+.+
T Consensus 1 py~C~~Cg-------k~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPICG-------FTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCCC-------CccCCHHHHHHHhhcccC---CCccCCCCCEeC---Chhhhhcc
Confidence 46677776 777777777777432454 246777777776 36666654
No 23
>PHA00616 hypothetical protein
Probab=97.73 E-value=9.6e-06 Score=55.05 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=29.7
Q ss_pred ccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCC
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPE 102 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~ 102 (426)
||+|..||+.|...++|.+|++.|| |++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence 6999999999999999999999994 677777654
No 24
>PHA00732 hypothetical protein
Probab=97.60 E-value=4.2e-05 Score=59.49 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=36.7
Q ss_pred ccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHH
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHF 124 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~ 124 (426)
||.|+.||+.|.+..+|+.|++.++ . ++.|+.|+ +.|. .+..|+
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H------------~---~~~C~~Cg-------KsF~---~l~~H~ 44 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNH------------T---LTKCPVCN-------KSYR---RLNQHF 44 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhccc------------C---CCccCCCC-------CEeC---Chhhhh
Confidence 6899999999999999999998532 2 35899998 8887 477886
No 25
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.59 E-value=0.00011 Score=52.83 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=36.1
Q ss_pred ceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCC-CccccccCCCcccChhhHHHHHHH
Q 037502 97 VFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNH-KQWVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 97 ~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~-k~~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
.|.||+|+ + ..+...|..|+...|..+ +.+.|++|...+. .+|..|+..
T Consensus 2 ~f~CP~C~-------~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCG-------K-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCC-------C-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence 47888887 7 455678888887777764 5688888887655 377788776
No 26
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.53 E-value=3.9e-05 Score=44.89 Aligned_cols=23 Identities=48% Similarity=1.012 Sum_probs=21.6
Q ss_pred cccccCCcccCCchhHHHHhhhc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|+|++|++.|.+...|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999875
No 27
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.53 E-value=2.3e-05 Score=74.52 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=20.2
Q ss_pred cCcceeCCCCCCCCCCcccccCCHHHHHHHH
Q 037502 94 RKRVFVCPEPSCLHHDPCHALGDLVGIKKHF 124 (426)
Q Consensus 94 ~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~ 124 (426)
++|||+|++.||. +.|....+|+.|+
T Consensus 346 d~KpykCpV~gC~-----K~YknqnGLKYH~ 371 (423)
T COG5189 346 DGKPYKCPVEGCN-----KKYKNQNGLKYHM 371 (423)
T ss_pred cCceecCCCCCch-----hhhccccchhhhh
Confidence 3588888888876 7888888888884
No 28
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.47 E-value=4.4e-05 Score=72.70 Aligned_cols=64 Identities=14% Similarity=0.306 Sum_probs=46.5
Q ss_pred CCCccccc--ccccccCcCCCCCCCCC-------CCcchhccCccccCCCCccccccCCcccCCchhHHHHhh
Q 037502 14 SEPFSCLE--NGISHNKRKRRPAGTPD-------PDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRR 77 (426)
Q Consensus 14 ~kpy~C~~--Cg~~f~~~~~l~~H~~~-------~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r 77 (426)
+|||+|++ |+|.+....-|+.|+.- |.......+..--...|||+|++|+|.|.....|+-|+.
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence 59999965 99999999999998831 111111112222345699999999999999999998853
No 29
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.12 E-value=0.00073 Score=48.55 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=39.6
Q ss_pred ccccccCCCcccChhhHHHHHHH-c--CCCCeecc-CCcccCChhhHHHHHHHhcC
Q 037502 133 QWVCEKCSKGYAVQSDYKAHLKT-C--GTRGHSCD-CGRVFSRVESFIEHQDACSK 184 (426)
Q Consensus 133 ~~~C~~C~k~f~~~~~L~~H~~~-h--~~kp~~C~-Cgk~F~~~~~L~~H~r~h~~ 184 (426)
.|.|++|++ ..+...|..|... | ..+.+.|. |...+. .+|..|+..+++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 489999999 4557899999999 7 34679997 998765 499999987653
No 30
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.06 E-value=0.00034 Score=40.81 Aligned_cols=20 Identities=30% Similarity=0.798 Sum_probs=9.2
Q ss_pred ccccCCCcccChhhHHHHHH
Q 037502 135 VCEKCSKGYAVQSDYKAHLK 154 (426)
Q Consensus 135 ~C~~C~k~f~~~~~L~~H~~ 154 (426)
+|++|++.|.+...|..|++
T Consensus 2 ~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 2 KCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHh
Confidence 44444444444444444443
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.02 E-value=0.00036 Score=40.75 Aligned_cols=24 Identities=33% Similarity=0.863 Sum_probs=20.3
Q ss_pred cccccCCcccCCchhHHHHhhhcc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
|.|++|++.|.+...|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999873
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.97 E-value=0.00035 Score=42.47 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=23.4
Q ss_pred ccccccCCcccCCchhHHHHhhhcc
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
+|+|+.|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 6899999999999999999999884
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.51 E-value=0.0019 Score=51.85 Aligned_cols=72 Identities=17% Similarity=0.402 Sum_probs=18.5
Q ss_pred ccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccc
Q 037502 58 VCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCE 137 (426)
Q Consensus 58 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~ 137 (426)
+|..|+..|.....|..|+...|+- ..+ .. ..+.....+..++.. .-...|.|.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~------------~~~----~~--------~~l~~~~~~~~~~~~--~~~~~~~C~ 54 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGF------------DIP----DQ--------KYLVDPNRLLNYLRK--KVKESFRCP 54 (100)
T ss_dssp --------------------------------------------------------------------------SSEEBS
T ss_pred Ccccccccccccccccccccccccc------------ccc----cc--------ccccccccccccccc--ccCCCCCCC
Confidence 4888999999999999998655410 000 00 112222333333211 112357888
Q ss_pred cCCCcccChhhHHHHHHH
Q 037502 138 KCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 138 ~C~k~f~~~~~L~~H~~~ 155 (426)
+|++.|.....|..|++.
T Consensus 55 ~C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 55 YCNKTFRSREALQEHMRS 72 (100)
T ss_dssp SSS-EESSHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHcC
Confidence 888888888888888887
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.40 E-value=0.0025 Score=36.98 Aligned_cols=22 Identities=27% Similarity=0.801 Sum_probs=10.6
Q ss_pred cccccCCCcccChhhHHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
|.|++|++.|.+...|..|+++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 3455555555555555555544
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.30 E-value=0.0034 Score=50.37 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=21.7
Q ss_pred eCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHcCCCCeecc-CCcccCChhhHHH
Q 037502 99 VCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCD-CGRVFSRVESFIE 177 (426)
Q Consensus 99 ~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C~-Cgk~F~~~~~L~~ 177 (426)
.|..|+ ..|.....|..|+...|.-..+ ....+.....+..+.+..-...+.|. |++.|.....|..
T Consensus 1 ~C~~C~-------~~f~~~~~l~~H~~~~H~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~ 68 (100)
T PF12756_consen 1 QCLFCD-------ESFSSVDDLLQHMKKKHGFDIP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQE 68 (100)
T ss_dssp ------------------------------------------------------------SSEEBSSSS-EESSHHHHHH
T ss_pred Cccccc-------cccccccccccccccccccccc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHH
Confidence 478887 8899999999998777743322 12222344445555544333479996 9999999999999
Q ss_pred HHHHhcC
Q 037502 178 HQDACSK 184 (426)
Q Consensus 178 H~r~h~~ 184 (426)
|++.+..
T Consensus 69 Hm~~~~H 75 (100)
T PF12756_consen 69 HMRSKHH 75 (100)
T ss_dssp HHHHTTT
T ss_pred HHcCccC
Confidence 9998643
No 36
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.26 E-value=0.0026 Score=38.52 Aligned_cols=22 Identities=36% Similarity=0.899 Sum_probs=11.1
Q ss_pred eecc-CCcccCChhhHHHHHHHh
Q 037502 161 HSCD-CGRVFSRVESFIEHQDAC 182 (426)
Q Consensus 161 ~~C~-Cgk~F~~~~~L~~H~r~h 182 (426)
|.|+ |++.|.....|..|++.|
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCccCCccCChhHHHHHhHHh
Confidence 4453 555555555555555444
No 37
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.10 E-value=0.0035 Score=36.92 Aligned_cols=23 Identities=35% Similarity=0.742 Sum_probs=21.6
Q ss_pred cccccCCcccCCchhHHHHhhhc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|+|+.|++.|.....|..|++.|
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H 23 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTH 23 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHh
Confidence 68999999999999999999987
No 38
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.013 Score=62.35 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=41.5
Q ss_pred eCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccC------CCcccChhhHHHHHHH-cCCCCeecc---CC-c
Q 037502 99 VCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKC------SKGYAVQSDYKAHLKT-CGTRGHSCD---CG-R 167 (426)
Q Consensus 99 ~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C------~k~f~~~~~L~~H~~~-h~~kp~~C~---Cg-k 167 (426)
.|..|. ..|.....|..|++..| |-|..| +..|....+|..|.+. | |.|+ |. +
T Consensus 184 ~C~~C~-------~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~~~ 247 (669)
T KOG2231|consen 184 LCKFCH-------ERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCRTK 247 (669)
T ss_pred cchhhh-------hhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccccc
Confidence 466665 77777888888864433 556555 3567777888888877 6 6673 53 4
Q ss_pred ccCChhhHHHHHHH
Q 037502 168 VFSRVESFIEHQDA 181 (426)
Q Consensus 168 ~F~~~~~L~~H~r~ 181 (426)
.|.....+..|++.
T Consensus 248 ~f~~~~~~ei~lk~ 261 (669)
T KOG2231|consen 248 KFYVAFELEIELKA 261 (669)
T ss_pred eeeehhHHHHHHHh
Confidence 44444445555553
No 39
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=95.84 E-value=0.004 Score=63.01 Aligned_cols=140 Identities=17% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCC--Cccccc--cCCcccCCchhHHHHhhhccCccccccccC
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLES--DRYVCE--ICNQGFQRDQNLQMHRRRHKVPWKLLKRET 90 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~--~py~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~ 90 (426)
.++.|..|...|.....|..|.+. ..|+++ +++.|. .|++.|.+...+..|..+|
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~----------~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----------- 346 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRS----------VNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLH----------- 346 (467)
T ss_pred cCCCCccccCCccccccccccccc----------cccccccCCceeeeccCCCccccccccccCCcccc-----------
Confidence 478999999999988874444431 167777 899999 7999999999999999999
Q ss_pred ccccCcceeCCCCCCCCCCcccccCCHHH-----HHHHHHhhhCCCCcccccc--CCCcccChhhHHHHHHHc-CCCCee
Q 037502 91 PVVRKRVFVCPEPSCLHHDPCHALGDLVG-----IKKHFRRKHSNHKQWVCEK--CSKGYAVQSDYKAHLKTC-GTRGHS 162 (426)
Q Consensus 91 ~~~~~k~~~C~~C~c~~~~~~~~f~~~~~-----l~~H~~r~H~~~k~~~C~~--C~k~f~~~~~L~~H~~~h-~~kp~~ 162 (426)
.+.+++.|....|. ..+..... .... ...-...+.+.|.. |-..+.+...+..|...+ ..+++.
T Consensus 347 --~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (467)
T COG5048 347 --TSISPAKEKLLNSS-----SKFSPLLNNEPPQSLQQ-YKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYN 418 (467)
T ss_pred --cCCCccccccccCc-----cccccccCCCCccchhh-ccCccCCccccccccchhhhhccccccccccccccccCCcC
Confidence 34444444443322 11111111 0000 01111223344422 445555555555555443 333333
Q ss_pred cc---CCcccCChhhHHHHHHHhc
Q 037502 163 CD---CGRVFSRVESFIEHQDACS 183 (426)
Q Consensus 163 C~---Cgk~F~~~~~L~~H~r~h~ 183 (426)
|. |.+.|.....+..|++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~ 442 (467)
T COG5048 419 CKNPPCSKSFNRHYNLIPHKKIHT 442 (467)
T ss_pred CCCCcchhhccCcccccccccccc
Confidence 32 6666666666666665553
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=95.53 E-value=0.0087 Score=41.74 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=22.8
Q ss_pred hCCCCccccccCCCcccChhhHHHHHHH-cCCCC
Q 037502 128 HSNHKQWVCEKCSKGYAVQSDYKAHLKT-CGTRG 160 (426)
Q Consensus 128 H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~kp 160 (426)
+..+.|..|++|+..+.+..+|++|+.. |+.||
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 4467788999999999999999999988 87775
No 41
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.53 E-value=0.0066 Score=35.99 Aligned_cols=23 Identities=35% Similarity=0.928 Sum_probs=21.2
Q ss_pred cccccCCcccCCchhHHHHhhhc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|.|++|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 68999999999999999999865
No 42
>smart00355 ZnF_C2H2 zinc finger.
Probab=94.91 E-value=0.022 Score=33.37 Aligned_cols=22 Identities=32% Similarity=0.764 Sum_probs=11.6
Q ss_pred cccccCCCcccChhhHHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
|.|..|++.|.....|..|++.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHH
Confidence 3455555555555555555543
No 43
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.60 E-value=0.021 Score=64.34 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=86.5
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhccCccc-----------cccc-cCccccCcceeCCCCCCCCCCcccccCCHHH
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHKVPWK-----------LLKR-ETPVVRKRVFVCPEPSCLHHDPCHALGDLVG 119 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~-----------~~~~-~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~ 119 (426)
.-.+-|+|..|+..|.....|..|||.-|.+.. .+.+ .....+.++|.|..|. ..+..+.+
T Consensus 461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~-------~stttng~ 533 (1406)
T KOG1146|consen 461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACN-------YSTTTNGN 533 (1406)
T ss_pred cccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeee-------eeeecchH
Confidence 334779999999999999999999998442221 1111 1112556889999998 88899999
Q ss_pred HHHHHHhh-hC-----------------------------------C------CCccccccCCCcccChhhHHHHHHH-c
Q 037502 120 IKKHFRRK-HS-----------------------------------N------HKQWVCEKCSKGYAVQSDYKAHLKT-C 156 (426)
Q Consensus 120 l~~H~~r~-H~-----------------------------------~------~k~~~C~~C~k~f~~~~~L~~H~~~-h 156 (426)
|..|++.. |. | +-.|.|.+|+..-+...+|+.|+.. +
T Consensus 534 LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~ 613 (1406)
T KOG1146|consen 534 LSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASP 613 (1406)
T ss_pred HHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCC
Confidence 99997521 10 1 1248899999888888888889887 4
Q ss_pred CC-CCeecc-CCcccCChhhHHHHHHHh
Q 037502 157 GT-RGHSCD-CGRVFSRVESFIEHQDAC 182 (426)
Q Consensus 157 ~~-kp~~C~-Cgk~F~~~~~L~~H~r~h 182 (426)
.- -|.-|. |+-.+.....+..+.+-+
T Consensus 614 ~s~~p~~~Lq~~it~~l~~~~~~~~~lp 641 (1406)
T KOG1146|consen 614 SSSPPSLVLQQNITSSLASLLGGQGRLP 641 (1406)
T ss_pred CCCChHHHhhhcchhhccccccCcCCCC
Confidence 33 336664 777776666666655544
No 44
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=94.55 E-value=0.016 Score=35.18 Aligned_cols=23 Identities=22% Similarity=0.748 Sum_probs=20.4
Q ss_pred cccccCCcccCCchhHHHHhhhc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|.|+.|++.|.+...|..|+++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 78999999999999999998754
No 45
>PRK04860 hypothetical protein; Provisional
Probab=94.11 E-value=0.028 Score=49.81 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=24.7
Q ss_pred ccccccCCCcccChhhHHHHHHH-cCCCCeecc-CCcccCCh
Q 037502 133 QWVCEKCSKGYAVQSDYKAHLKT-CGTRGHSCD-CGRVFSRV 172 (426)
Q Consensus 133 ~~~C~~C~k~f~~~~~L~~H~~~-h~~kp~~C~-Cgk~F~~~ 172 (426)
+|.|. |++ ....+++|.++ .++++|.|. |+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 57776 776 55667777777 477777774 77777543
No 46
>PRK04860 hypothetical protein; Provisional
Probab=94.09 E-value=0.036 Score=49.14 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=29.6
Q ss_pred CccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 55 DRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
-+|.|. |++ ...++.+|.++| .++++|.|..|+
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~-------------~g~~~YrC~~C~ 150 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVV-------------RGEAVYRCRRCG 150 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHh-------------cCCccEECCCCC
Confidence 479998 998 678899999999 789999999988
No 47
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=93.68 E-value=0.044 Score=38.29 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhcc
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
..+.|..|++|+..+.+..+|++|+.++|
T Consensus 20 ~S~~PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 20 QSEQPATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp TTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred ccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence 34678999999999999999999997765
No 48
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.48 E-value=0.06 Score=54.38 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=88.9
Q ss_pred CCCCCC--CCCCC--CCcccc--cccccccCcCCCCCCCCCCCcchhccCccccCCCCcccccc--CCcccCCchhHHHH
Q 037502 4 NNSPSA--IPCSS--EPFSCL--ENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEI--CNQGFQRDQNLQMH 75 (426)
Q Consensus 4 ~~~~~~--~~~~~--kpy~C~--~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~--Cgk~F~~~~~L~~H 75 (426)
+..|.+ +|.++ +||.|. .|++.|.+... +..|..+|++..++.|.. |.+.+.....-..+
T Consensus 305 l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (467)
T COG5048 305 LTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDA------------LKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPP 372 (467)
T ss_pred ccccccccccccccCCceeeeccCCCcccccccc------------ccCCcccccCCCccccccccCccccccccCCCCc
Confidence 467777 89999 999999 79999999987 555556666666666643 44444433331111
Q ss_pred hhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCC--ccccccCCCcccChhhHHHHH
Q 037502 76 RRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK--QWVCEKCSKGYAVQSDYKAHL 153 (426)
Q Consensus 76 ~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k--~~~C~~C~k~f~~~~~L~~H~ 153 (426)
...... ......+.+.|..-+|. ..+.+...+..| ...|...+ .+.|..|.+.|.....+..|+
T Consensus 373 ~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (467)
T COG5048 373 QSLQQY--------KDLKNDKKSETLSNSCI-----RNFKRDSNLSLH-IITHLSFRPYNCKNPPCSKSFNRHYNLIPHK 438 (467)
T ss_pred cchhhc--------cCccCCccccccccchh-----hhhccccccccc-cccccccCCcCCCCCcchhhccCcccccccc
Confidence 111100 00023445555554443 566666666666 34555555 456677999999999999999
Q ss_pred HHc-CCCCeeccCCcccCChhhH
Q 037502 154 KTC-GTRGHSCDCGRVFSRVESF 175 (426)
Q Consensus 154 ~~h-~~kp~~C~Cgk~F~~~~~L 175 (426)
+.+ ...++.|.+-+.|.....+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (467)
T COG5048 439 KIHTNHAPLLCSILKSFRRDLDL 461 (467)
T ss_pred cccccCCceeeccccccchhhhh
Confidence 985 4455555555555444333
No 49
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=93.46 E-value=0.038 Score=32.64 Aligned_cols=21 Identities=24% Similarity=0.858 Sum_probs=11.5
Q ss_pred cccccCCCcccChhhHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLK 154 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~ 154 (426)
|.|++|++.|.....|..|++
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHC
Confidence 345555555555555555554
No 50
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=92.27 E-value=0.073 Score=31.13 Aligned_cols=23 Identities=35% Similarity=0.726 Sum_probs=18.6
Q ss_pred cccccCCcccCCchhHHHHhhhcc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
|+|+.|+.... ...|..|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 78999998888 899999999874
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.18 E-value=0.036 Score=33.58 Aligned_cols=22 Identities=27% Similarity=0.798 Sum_probs=13.5
Q ss_pred cccccCCCcccChhhHHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5566666666666666666543
No 52
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=92.17 E-value=2.1 Score=37.63 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhhhcccCCC
Q 037502 340 AEEARQAAKRQIELAEQ-EFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACKQQFQSRL 406 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~-e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 406 (426)
-++|++.|.++++.|-. +.++|+|+.++|+.+.+ ..|+.|+..|-..+..+.=..+.+-|++.-
T Consensus 76 i~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie---~Ek~~Al~elr~eva~Lav~iAsk~~~~~~ 140 (154)
T PRK06568 76 IEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ---NQKSTASKELQDEFCDEVIKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444443332 23446666666665554 456778888887888877788888888754
No 53
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.098 Score=55.91 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=7.8
Q ss_pred ccccccccccc
Q 037502 17 FSCLENGISHN 27 (426)
Q Consensus 17 y~C~~Cg~~f~ 27 (426)
+.|.+|+..|.
T Consensus 100 ~~C~~C~~~~~ 110 (669)
T KOG2231|consen 100 HSCHICDRRFR 110 (669)
T ss_pred hhcCccccchh
Confidence 56788877664
No 54
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.99 E-value=0.14 Score=47.85 Aligned_cols=45 Identities=29% Similarity=0.758 Sum_probs=28.6
Q ss_pred cccccCCCcccChhhHHHHHHHcCCCCeec-cCCcccCChhhHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKTCGTRGHSC-DCGRVFSRVESFIEHQD 180 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C-~Cgk~F~~~~~L~~H~r 180 (426)
|.|.+||..... ..+-+|+..+...-|.| |||+.|.+ .++..|..
T Consensus 4 FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhhh
Confidence 667777766553 34556776643366777 57777766 66666654
No 55
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=90.41 E-value=0.23 Score=28.97 Aligned_cols=20 Identities=40% Similarity=0.710 Sum_probs=7.2
Q ss_pred ccccCCCcccChhhHHHHHHH
Q 037502 135 VCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 135 ~C~~C~k~f~~~~~L~~H~~~ 155 (426)
+|..|+.... ...|..|++.
T Consensus 2 ~C~~C~y~t~-~~~l~~H~~~ 21 (24)
T PF13909_consen 2 KCPHCSYSTS-KSNLKRHLKR 21 (24)
T ss_dssp E-SSSS-EES-HHHHHHHHHH
T ss_pred CCCCCCCcCC-HHHHHHHHHh
Confidence 3444443333 3344444433
No 56
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=89.27 E-value=0.24 Score=31.61 Aligned_cols=24 Identities=21% Similarity=0.674 Sum_probs=21.1
Q ss_pred ccccccCCcccCCchhHHHHhhhc
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
+|.|++|++.|.....+..|++..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChH
Confidence 588999999999999999998644
No 57
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=89.18 E-value=0.14 Score=58.12 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHH-c-------------------------CCCCeecc-C
Q 037502 113 ALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKT-C-------------------------GTRGHSCD-C 165 (426)
Q Consensus 113 ~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h-------------------------~~kp~~C~-C 165 (426)
.+.+...+..|+...|+-.|.|+|..|+-.|.....|-.|+|. | +.++|.|. |
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C 524 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRAC 524 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceee
Confidence 3333444444444455666788888888888888888888886 3 23578896 9
Q ss_pred CcccCChhhHHHHHHHh
Q 037502 166 GRVFSRVESFIEHQDAC 182 (426)
Q Consensus 166 gk~F~~~~~L~~H~r~h 182 (426)
..+|+.+.+|..|+...
T Consensus 525 ~~stttng~LsihlqS~ 541 (1406)
T KOG1146|consen 525 NYSTTTNGNLSIHLQSD 541 (1406)
T ss_pred eeeeecchHHHHHHHHH
Confidence 99999999999999753
No 58
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=0.2 Score=45.38 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=63.3
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHH-c----------CCCCe
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKT-C----------GTRGH 161 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~-h----------~~kp~ 161 (426)
.....|.|++-||- ..|-....+..|+...|+ -.|.+|.+.|....-|..|+.- | |.--|
T Consensus 75 ~~~~~~~cqvagc~-----~~~d~lD~~E~hY~~~h~----~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy 145 (253)
T KOG4173|consen 75 PRVPAFACQVAGCC-----QVFDALDDYEHHYHTLHG----NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMY 145 (253)
T ss_pred cccccccccccchH-----HHHhhhhhHHHhhhhccc----chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHH
Confidence 34567889998874 888888888888654553 3899999999999999999875 5 44569
Q ss_pred ec--c-CCcccCChhhHHHHHHH
Q 037502 162 SC--D-CGRVFSRVESFIEHQDA 181 (426)
Q Consensus 162 ~C--~-Cgk~F~~~~~L~~H~r~ 181 (426)
.| + |+..|.+....+.|+-.
T Consensus 146 ~ClvEgCt~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 146 QCLVEGCTEKFKTSRDRKDHMIR 168 (253)
T ss_pred HHHHHhhhhhhhhhhhhhhHHHH
Confidence 99 3 99999999999999743
No 59
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=87.96 E-value=8.9 Score=33.92 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 340 ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a 375 (426)
-++|++.|.++++.+ +++.++|.++.+.|+.+++..
T Consensus 80 i~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~e 116 (164)
T PRK14471 80 LKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESE 116 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444 455677888888887776543
No 60
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=87.36 E-value=0.42 Score=28.46 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=17.5
Q ss_pred cccccCCcccCCchhHHHHhhh
Q 037502 57 YVCEICNQGFQRDQNLQMHRRR 78 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~ 78 (426)
..|+.||+.| ....|..|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 67789899765
No 61
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=87.02 E-value=10 Score=33.66 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhh
Q 037502 339 CAEEARQAAKRQIELAEQ-EFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACK 399 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~-e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 399 (426)
+-+++++.|..+++.+.. +.++|.++.+.|+.+.++ .|+.|+.+|...+..+......
T Consensus 81 Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~---e~~~a~~el~~e~~~lAv~~A~ 139 (167)
T PRK14475 81 MLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQ---AEAQAAADVKAAAVDLAAQAAE 139 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433322 345667777777766544 4455555555444444444333
No 62
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=86.80 E-value=10 Score=33.34 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc
Q 037502 358 FANAKRIRQQAQAELDK-AQALKEHAIKQIN 387 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~~-a~~~~~~a~~~~~ 387 (426)
.+.|.++++.|..+... +.++++.|-++|.
T Consensus 80 ~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie 110 (154)
T PRK06568 80 NEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQ 110 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655 7777888777775
No 63
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=86.80 E-value=7.9 Score=37.00 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhchhhhhhcchhhhh
Q 037502 372 LDKAQALKEHAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 372 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 400 (426)
++++....+..+..+...|+.+.+..-++
T Consensus 120 ~~~a~~~~~~~l~~~e~el~~La~~iAeK 148 (255)
T TIGR03825 120 VEEAKDDYEEKIESAQPLIIELACALAEK 148 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444555555544444444444333
No 64
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=86.79 E-value=11 Score=33.71 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIEL-AEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~-Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
+-++++++|.++++. -+++.++|.+++++|+.+++..
T Consensus 90 ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e 127 (174)
T PRK07352 90 IRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAE 127 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 2455667778888888777655
No 65
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=86.69 E-value=0.47 Score=30.24 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=15.9
Q ss_pred ccccccCCCcccChhhHHHHHHH
Q 037502 133 QWVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 133 ~~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
+|-|+.|++.|.+...+..|+..
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 46677777777777777777655
No 66
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=86.67 E-value=11 Score=33.69 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a 375 (426)
+-++++++|.++++.+ +++.++|.++.+.|+.+++..
T Consensus 89 ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e 126 (175)
T PRK14472 89 IIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQE 126 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444332 345567777777777776554
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.54 E-value=0.5 Score=46.17 Aligned_cols=71 Identities=24% Similarity=0.414 Sum_probs=47.2
Q ss_pred eCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCC-------cccChhhHHHHHHH-cCCCCeecc---CC-
Q 037502 99 VCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSK-------GYAVQSDYKAHLKT-CGTRGHSCD---CG- 166 (426)
Q Consensus 99 ~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k-------~f~~~~~L~~H~~~-h~~kp~~C~---Cg- 166 (426)
.|..|. ..|.+-+.|..|.+..| -.|.+|++ .|.+-.+|-.|.+. | |.|. |.
T Consensus 222 ~C~FC~-------~~FYdDDEL~~HcR~~H-----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~ 285 (493)
T COG5236 222 LCIFCK-------IYFYDDDELRRHCRLRH-----EACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRV 285 (493)
T ss_pred hhhhcc-------ceecChHHHHHHHHhhh-----hhhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEec
Confidence 577776 77888888888865444 24555543 47777777777776 5 6662 53
Q ss_pred ---cccCChhhHHHHHHHhcCC
Q 037502 167 ---RVFSRVESFIEHQDACSKG 185 (426)
Q Consensus 167 ---k~F~~~~~L~~H~r~h~~~ 185 (426)
..|.....|..|+-.-++.
T Consensus 286 ~k~~vf~~~~el~~h~~~~h~~ 307 (493)
T COG5236 286 GKCYVFPYHTELLEHLTRFHKV 307 (493)
T ss_pred CcEEEeccHHHHHHHHHHHhhc
Confidence 4577778888887654443
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.53 E-value=0.9 Score=44.43 Aligned_cols=78 Identities=21% Similarity=0.448 Sum_probs=56.8
Q ss_pred ccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccc
Q 037502 58 VCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCE 137 (426)
Q Consensus 58 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~ 137 (426)
.|..|.+-|-....|..|+|.-| ++-|.|..-+ --+...|.+-..|..|++..| |.|.
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~H--------------E~ChICD~v~---p~~~QYFK~Y~~Le~HF~~~h-----y~ct 279 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRH--------------EACHICDMVG---PIRYQYFKSYEDLEAHFRNAH-----YCCT 279 (493)
T ss_pred hhhhccceecChHHHHHHHHhhh--------------hhhhhhhccC---ccchhhhhCHHHHHHHhhcCc-----eEEE
Confidence 59999999999999999998764 5545544322 111367888889999986555 7774
Q ss_pred c--CC----CcccChhhHHHHHHH-cC
Q 037502 138 K--CS----KGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 138 ~--C~----k~f~~~~~L~~H~~~-h~ 157 (426)
+ |. ..|.....|..|+.. |+
T Consensus 280 ~qtc~~~k~~vf~~~~el~~h~~~~h~ 306 (493)
T COG5236 280 FQTCRVGKCYVFPYHTELLEHLTRFHK 306 (493)
T ss_pred EEEEecCcEEEeccHHHHHHHHHHHhh
Confidence 4 42 368888999999877 74
No 69
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=86.46 E-value=0.39 Score=47.65 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=41.4
Q ss_pred CccccccCCCcccChhhHHHHHHH-cCC-----------------------CCeecc-CC---cccCChhhHHHHHHH
Q 037502 132 KQWVCEKCSKGYAVQSDYKAHLKT-CGT-----------------------RGHSCD-CG---RVFSRVESFIEHQDA 181 (426)
Q Consensus 132 k~~~C~~C~k~f~~~~~L~~H~~~-h~~-----------------------kp~~C~-Cg---k~F~~~~~L~~H~r~ 181 (426)
-|-.|-.|++.|.....-..||.. ||- ..|.|- |+ +.|........||..
T Consensus 165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 356789999999999999999998 753 247784 87 999999999999975
No 70
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=86.23 E-value=9.7 Score=35.16 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q 037502 360 NAKRIRQQAQAELDKAQALKEHAIKQINSTILR 392 (426)
Q Consensus 360 ~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~ 392 (426)
++.++.++|+.+++ .+|+.|+.+|...+.+
T Consensus 146 ea~~~l~~Ae~~I~---~ek~~A~~el~~~a~e 175 (204)
T PRK09174 146 SLEKKLKEAEARIA---AIKAKAMADVGSIAEE 175 (204)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34445555554443 3455666555544433
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=85.80 E-value=12 Score=34.48 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcch
Q 037502 339 CAEEARQAAKRQIE-LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCH 396 (426)
Q Consensus 339 ~ae~ar~~Akrq~e-~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~ 396 (426)
+-++++++|.++++ .-+++..+|.++.++|+.++++. ++.|+.++...+..+...
T Consensus 119 Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~E---k~~a~~~Lk~ei~~lAv~ 174 (205)
T PRK06231 119 IIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKE---RRELKEQLQKESVELAML 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444445544433 33456677888888888777654 445544444444444333
No 72
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=85.74 E-value=11 Score=35.90 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhhh
Q 037502 355 EQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 400 (426)
+++.++|.+++++|+.+++. .|+.|++++...+.........+
T Consensus 93 ~~A~~ea~~~~~~a~~~ie~---E~~~a~~~l~~ei~~la~~~A~k 135 (246)
T TIGR03321 93 DEAREEADEIREKWQEALRR---EQAALSDELRRRTGAEVFAIARK 135 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777666554 34555555554444444444443
No 73
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=85.52 E-value=0.74 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=10.4
Q ss_pred ccccCCCcccChhhHHHHHHH
Q 037502 135 VCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 135 ~C~~C~k~f~~~~~L~~H~~~ 155 (426)
.|..||+.| ....|..|+++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHHh
Confidence 455555555 34455555443
No 74
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=83.95 E-value=12 Score=34.23 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchh
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHA 397 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~ 397 (426)
+=++|.++|.+.++.|+++- -+..|++|..-+...+.-++.--..+...+-++...+
T Consensus 46 Il~~Ae~eAe~l~~~a~e~a--~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~a 102 (191)
T PF06188_consen 46 ILQQAEEEAEALLEQAYEQA--EAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQA 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555443322 2334666665555555555544444444444444433
No 75
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=83.79 E-value=13 Score=32.55 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhhhcccCC
Q 037502 363 RIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACKQQFQSR 405 (426)
Q Consensus 363 r~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 405 (426)
.-|+.+...+......++...+.+...++++.+...++-+..-
T Consensus 51 ~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil~~~ 93 (166)
T TIGR02499 51 QFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQILGEY 93 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4456666667666667777778888888999999988887653
No 76
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=82.59 E-value=24 Score=30.76 Aligned_cols=37 Identities=41% Similarity=0.481 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a 375 (426)
+-++++++|.++++.. +.+..+|+++.+.|+.+++..
T Consensus 75 i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 112 (156)
T PRK05759 75 IIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQE 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666655554 334667788888887777654
No 77
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.43 E-value=0.82 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.596 Sum_probs=18.7
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcc
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 65 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~ 65 (426)
|.|.+||..+.... .++.|++||..
T Consensus 2 ~~C~~CGy~y~~~~------------------------~~~~CP~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEE------------------------APWVCPVCGAP 26 (33)
T ss_pred EECCCCCCEECCCc------------------------CCCcCcCCCCc
Confidence 78999997664322 57999999863
No 78
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=82.39 E-value=21 Score=32.20 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhhh
Q 037502 357 EFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 357 e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 400 (426)
+..+|.++.+.|+.+++ ..|+.|++++...+.........+
T Consensus 114 A~~ea~~~~~~a~~~ie---~Ek~~a~~~l~~ei~~lav~~A~k 154 (184)
T CHL00019 114 AKEDLERLENYKNETIR---FEQQRAINQVRQQVFQLALQRALG 154 (184)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 345555555555555554444443
No 79
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.20 E-value=0.77 Score=37.89 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=24.7
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCc
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRD 69 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~ 69 (426)
..|+.||+.|..-.. .|.+|+.||..|.-.
T Consensus 10 R~Cp~CG~kFYDLnk-----------------------~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNK-----------------------DPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCC-----------------------CCccCCCCCCccCcc
Confidence 589999999966432 589999999999766
No 80
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=82.03 E-value=24 Score=31.05 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAE 371 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e 371 (426)
|++++++|....+..|+++++|+...+.++.|
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 81
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=81.81 E-value=0.69 Score=50.60 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=9.2
Q ss_pred CCCccccccCCCc
Q 037502 130 NHKQWVCEKCSKG 142 (426)
Q Consensus 130 ~~k~~~C~~C~k~ 142 (426)
...|..|+.||..
T Consensus 472 ~~~p~~Cp~Cgs~ 484 (730)
T COG1198 472 EPIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCCC
Confidence 5567888888754
No 82
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=81.54 E-value=24 Score=31.39 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIEL-AEQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~-Ae~e~~~Akr~~e~a~~e~~ 373 (426)
+-++|+++|..+++. -+++.++|+++.+.|+.+.+
T Consensus 93 Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie 128 (167)
T PRK08475 93 IVETAKKEAYILTQKIEKQTKDDIENLIKSFEELME 128 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444332 23445556666666655443
No 83
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=81.47 E-value=28 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~ 374 (426)
+-+++++.|+++++.+ +.+.++|.++.+.|+.++++
T Consensus 93 ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ 129 (156)
T CHL00118 93 EITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEA 129 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443332 23445566666666665543
No 84
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=81.10 E-value=0.71 Score=32.89 Aligned_cols=29 Identities=21% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCCCccccccCCCcccChhhHHHHHHH-cC
Q 037502 129 SNHKQWVCEKCSKGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 129 ~~~k~~~C~~C~k~f~~~~~L~~H~~~-h~ 157 (426)
.|+.-+.|+.||..|....++.+|... |+
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence 356667777777777777777777666 53
No 85
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=80.89 E-value=25 Score=31.06 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Q 037502 356 QEFANAKRIRQQAQAELDKAQALKEHAIKQINSTIL 391 (426)
Q Consensus 356 ~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~ 391 (426)
.+..+|.++.+.|+.++++. |+.|+.++.+.+.
T Consensus 97 ~A~~ea~~~~~~a~~~I~~e---k~~a~~~L~~~i~ 129 (164)
T PRK14473 97 QARREAEKIKEEARAQAEQE---RQRMLSELKSQIA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34556666777676666443 4455555444433
No 86
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=80.62 E-value=0.47 Score=44.01 Aligned_cols=49 Identities=24% Similarity=0.438 Sum_probs=34.6
Q ss_pred CccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhh
Q 037502 55 DRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKH 128 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H 128 (426)
|+| |..|++.|....-|..|++.. .|+|.+|- +.+.+--.|..|-+.+|
T Consensus 10 kpw-cwycnrefddekiliqhqkak-----------------hfkchich-------kkl~sgpglsihcmqvh 58 (341)
T KOG2893|consen 10 KPW-CWYCNREFDDEKILIQHQKAK-----------------HFKCHICH-------KKLFSGPGLSIHCMQVH 58 (341)
T ss_pred Cce-eeecccccchhhhhhhhhhhc-----------------cceeeeeh-------hhhccCCCceeehhhhh
Confidence 444 889999999988888887654 48888887 55555555666644444
No 87
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=80.60 E-value=29 Score=31.00 Aligned_cols=49 Identities=31% Similarity=0.411 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 037502 339 CAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~ 390 (426)
+-++++++|.++++.. +++.++|.++.+.|+.++++. |+.|+.++...+
T Consensus 89 ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e---k~~a~~~l~~ei 138 (173)
T PRK13453 89 ILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQ---KERAIADINNQV 138 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444455444443322 334566777777777766543 444444444333
No 88
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=80.37 E-value=1.1 Score=39.85 Aligned_cols=25 Identities=32% Similarity=0.691 Sum_probs=20.4
Q ss_pred cceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCC
Q 037502 96 RVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSK 141 (426)
Q Consensus 96 k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k 141 (426)
+.|+|++|| -+|-|+-|.+|++||-
T Consensus 133 ~~~vC~vCG---------------------y~~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVCG---------------------YTHEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCCC---------------------CcccCCCCCcCCCCCC
Confidence 389999998 2356799999999983
No 89
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.98 E-value=21 Score=32.29 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q 037502 321 RLKEQAREQLRLAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINST 389 (426)
Q Consensus 321 ~~~~~a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~ 389 (426)
.+++.++.+--+|-.+ |+.++-.+-|.--+|+++.++-.+|.|..+.++++-..-|+||-+.|--.
T Consensus 102 ~e~eaaE~~el~a~N~---a~N~~~~~~R~~Rla~~~~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~ 167 (227)
T KOG4691|consen 102 AEKEAAEHRELMAWNQ---AENRRLHELRIARLAQEEREQEQRIAEEQARKAEEVQAWKQQAEREVLQL 167 (227)
T ss_pred hhhHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333 23333344555567888888888898888888888888889888887433
No 90
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=79.08 E-value=34 Score=29.19 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~ 374 (426)
+.+++++.|.++++.. +.+..+|.++.+.|+.+++.
T Consensus 76 i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~ 112 (140)
T PRK07353 76 VIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQ 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443332 33455666666666666543
No 91
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=79.02 E-value=29 Score=33.10 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q 037502 356 QEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILR 392 (426)
Q Consensus 356 ~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~ 392 (426)
++.++|.+++++|+.++++ .|+.|++++...+..
T Consensus 94 ~A~~ea~~~~~~a~~~ie~---Ek~~a~~~L~~~v~~ 127 (250)
T PRK14474 94 EAREDVATARDEWLEQLER---EKQEFFKALQQQTGQ 127 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3455666666666665543 333444444333333
No 92
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=78.98 E-value=35 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 340 ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a 375 (426)
-+.++++|.++++.. ..+.++|.++.+.|+.+++..
T Consensus 88 i~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e 124 (173)
T PRK13460 88 VAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELA 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333322 334566777777777766543
No 93
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=77.81 E-value=34 Score=29.98 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhh
Q 037502 339 CAEEARQAAKRQIEL-AEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACK 399 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~-Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 399 (426)
+-++++.+|..+++. =+++..+|.++++.|+.+++. .|+.|+..+...+..+......
T Consensus 76 ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~---e~~~a~~~l~~ei~~lA~~~a~ 134 (159)
T PRK13461 76 IVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQR---EKEKAEYEIKNQAVDLAVLLSS 134 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444332 234456677777777776653 4555555555444444433333
No 94
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.78 E-value=1.3 Score=41.21 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCcccccccccccCcCCCCCCCCCC--CcchhccCccccCCCCc-----cccccCCcccCCc
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDP--DAEVVSLSPKTLLESDR-----YVCEICNQGFQRD 69 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~--~~~~l~~h~~~h~~~~p-----y~C~~Cgk~F~~~ 69 (426)
+|.+.|++|++.|....-+....+.- +.+ +..+ ..+..| .+|+.||.+|...
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D-~~~~---Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSD-FCPR---YKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCC-Cccc---cCCCCCeeeeEEECCCCCCccccc
Confidence 46789999999998876544333211 111 1111 122333 6799999887544
No 95
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=77.59 E-value=32 Score=30.52 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhc
Q 037502 375 AQALKEHAIKQIN 387 (426)
Q Consensus 375 a~~~~~~a~~~~~ 387 (426)
|.++++.|-.+|.
T Consensus 104 a~~~~~~A~~~I~ 116 (167)
T PRK14475 104 IKRRAEMAERKIA 116 (167)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555553
No 96
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=76.46 E-value=15 Score=34.16 Aligned_cols=51 Identities=29% Similarity=0.313 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 327 REQLRLAMAEKACAEEARQ--AAKRQIELAEQEFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 327 ~~~~~~a~~~~~~ae~ar~--~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~ 377 (426)
.++.+|+|+|-+.+|-.|+ +|..-.-+|.+|...=+++.|++|+++-||++
T Consensus 124 ~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaEd 176 (265)
T PF06409_consen 124 KHLRKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAED 176 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776766666 45555566677777778888888888888876
No 97
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=75.76 E-value=41 Score=29.60 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.7
Q ss_pred HHHHHHhhhchh
Q 037502 378 LKEHAIKQINST 389 (426)
Q Consensus 378 ~~~~a~~~~~~~ 389 (426)
.|+.|+..+.+.
T Consensus 116 ek~~a~~~l~~~ 127 (164)
T PRK14471 116 EKNAAMAEIKNQ 127 (164)
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 98
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=75.29 E-value=7.1 Score=35.33 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 345 QAAKRQIELAEQEFANAKRIRQQAQAEL 372 (426)
Q Consensus 345 ~~Akrq~e~Ae~e~~~Akr~~e~a~~e~ 372 (426)
..|..++..|+++.++|+++.++|++|.
T Consensus 155 ~~ai~~k~~a~q~~~~a~~~~~~a~~ea 182 (196)
T cd03401 155 TKAVEAKQVAQQEAERAKFVVEKAEQEK 182 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666665555555543
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=75.25 E-value=40 Score=33.90 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 037502 335 AEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINS 388 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~ 388 (426)
.|+...++.+.+|++.+..|.+++++.-.+-+.-+.+|.+--.-|.++..+..|
T Consensus 116 ~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qs 169 (499)
T COG4372 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQS 169 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455555555555544444444444444444445555544443
No 100
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=75.02 E-value=33 Score=35.64 Aligned_cols=37 Identities=35% Similarity=0.373 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIEL-AEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~-Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
+-++|++.|+++++. -+++.++|+++.++|+.++++.
T Consensus 72 Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~e 109 (445)
T PRK13428 72 VVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLL 109 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444332 3444566777777777666543
No 101
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=75.02 E-value=1.8 Score=27.81 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=18.2
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCc
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQ 64 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk 64 (426)
-|.|.+||..+.... .|.+|++||.
T Consensus 2 ~~~C~~CG~i~~g~~------------------------~p~~CP~Cg~ 26 (34)
T cd00729 2 VWVCPVCGYIHEGEE------------------------APEKCPICGA 26 (34)
T ss_pred eEECCCCCCEeECCc------------------------CCCcCcCCCC
Confidence 478999997664322 3679999986
No 102
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=74.57 E-value=2.2 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=17.6
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcc
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 65 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~ 65 (426)
|.|..||..+.-.. ..+.+|..||..
T Consensus 1 Y~C~~Cg~~~~~~~-----------------------~~~irC~~CG~R 26 (32)
T PF03604_consen 1 YICGECGAEVELKP-----------------------GDPIRCPECGHR 26 (32)
T ss_dssp EBESSSSSSE-BST-----------------------SSTSSBSSSS-S
T ss_pred CCCCcCCCeeEcCC-----------------------CCcEECCcCCCe
Confidence 78999998875333 246789999853
No 103
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=74.45 E-value=46 Score=27.14 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 037502 327 REQLRLAMAEK-ACAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 327 ~~~~~~a~~~~-~~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~ 390 (426)
.+.|+-|..+. .+-++|+..|..+++.+ +.+..+|.++.+.|+.+.+ ..|+.|+.++...+
T Consensus 16 e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie---~Ek~~a~~elk~ei 78 (103)
T PRK08404 16 EERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGE---EEAKKILEEGEKEI 78 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33444444332 24555555555554433 4567777888888776653 44555555554433
No 104
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=74.11 E-value=35 Score=30.77 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhcchhhh
Q 037502 362 KRIRQQAQAELDKAQALKEHAIKQINSTILRVTCHACK 399 (426)
Q Consensus 362 kr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 399 (426)
.++.+.|+.+. ...|+.|++++...+..+......
T Consensus 122 ~~~~~~A~~~I---~~ek~~a~~~l~~~i~~lA~~~a~ 156 (184)
T PRK13455 122 ARRLAAAEDQI---ASAEAAAVKAVRDRAVSVAVAAAA 156 (184)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333 234455555555555544444333
No 105
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=73.59 E-value=57 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhc
Q 037502 374 KAQALKEHAIKQIN 387 (426)
Q Consensus 374 ~a~~~~~~a~~~~~ 387 (426)
.|.++++.|..+|.
T Consensus 98 ea~~~~~~a~~~i~ 111 (159)
T PRK13461 98 EADLIIERAKLEAQ 111 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 106
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=73.59 E-value=2.1 Score=29.30 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.5
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCc
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQ 64 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk 64 (426)
.|.|..||..|.-.. ..+.+|+.||.
T Consensus 2 ~Y~C~~Cg~~~~~~~-----------------------~~~irC~~CG~ 27 (44)
T smart00659 2 IYICGECGRENEIKS-----------------------KDVVRCRECGY 27 (44)
T ss_pred EEECCCCCCEeecCC-----------------------CCceECCCCCc
Confidence 489999999875432 24688999984
No 107
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.53 E-value=2.1 Score=36.03 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=26.9
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHH
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQ 73 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~ 73 (426)
...|+.||+.|..-.+ .|..|+.||..|.....++
T Consensus 9 Kr~Cp~cg~kFYDLnk-----------------------~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNTGSKFYDLNR-----------------------RPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCcCccccccCC-----------------------CCccCCCcCCccCcchhhc
Confidence 3689999999966432 5899999999987664443
No 108
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.31 E-value=23 Score=35.61 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 323 KEQAREQLRLAMAEKACAEEARQAAKRQI 351 (426)
Q Consensus 323 ~~~a~~~~~~a~~~~~~ae~ar~~Akrq~ 351 (426)
....++++..+..+++.+|-.|+.+.-|+
T Consensus 83 lr~~rtel~~a~~~k~~~e~er~~~~~El 111 (499)
T COG4372 83 LRALRTELGTAQGEKRAAETEREAARSEL 111 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555444333333
No 109
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.04 E-value=1.4 Score=41.36 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=34.1
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhc
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|.|..||....... +..|+-.-.+ .-|.|-.||+.|.. ..+..|..-=
T Consensus 4 FtCnvCgEsvKKp~-------------vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCI 51 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQ-------------VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCI 51 (276)
T ss_pred Eehhhhhhhccccc-------------hHHHHHhccC-CeeEEeeccccccc-chhhhhhhhc
Confidence 78999999876544 3444444444 45999999999988 6677776533
No 110
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=72.72 E-value=41 Score=31.06 Aligned_cols=6 Identities=17% Similarity=0.136 Sum_probs=2.1
Q ss_pred HHHHhh
Q 037502 380 EHAIKQ 385 (426)
Q Consensus 380 ~~a~~~ 385 (426)
+.|-.+
T Consensus 152 ~~Ae~~ 157 (204)
T PRK09174 152 KEAEAR 157 (204)
T ss_pred HHHHHH
Confidence 333333
No 111
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=71.80 E-value=51 Score=26.52 Aligned_cols=48 Identities=31% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
-+.+-...+.+++.++.+.+.++..|..|..+++....|++...+...
T Consensus 57 l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~ 104 (123)
T PF02050_consen 57 LEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQ 104 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677788888888888888888888888888888877766543
No 112
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.70 E-value=40 Score=38.69 Aligned_cols=42 Identities=26% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
+|.+-.-.|+.+.++|-+.++.|+.-|++++..-..|-+.++
T Consensus 1574 ~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~ 1615 (1758)
T KOG0994|consen 1574 EADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLAT 1615 (1758)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555555555555555555555544444444443
No 113
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=70.87 E-value=1.8 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=19.1
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCc
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQ 64 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk 64 (426)
.|.|+.||+.--.+-. +-..-..+|+|+.||-
T Consensus 27 ~F~CPnCGe~~I~Rc~-----------------~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCA-----------------KCRKLGNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhh-----------------hHHHcCCceECCCcCc
Confidence 5788888864433321 1112235799999984
No 114
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=70.72 E-value=20 Score=33.85 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 353 LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
.++.++++|+..++.|+++++.++...+.+-.+++
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (265)
T TIGR00999 51 IPRQEFESAEYALEEAQAEVQAAKSELRSAREAKD 85 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 46677888888888888888887766655554443
No 115
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=70.52 E-value=35 Score=31.29 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFANAK 362 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Ak 362 (426)
+-++|+++|.+.++.|+.+-++.+
T Consensus 38 Ii~eA~~eAe~i~~kAe~ea~~~~ 61 (198)
T PRK01558 38 IIAKAEEEAKELKAKAEKEANDYK 61 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544333
No 116
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=70.17 E-value=70 Score=28.80 Aligned_cols=11 Identities=9% Similarity=0.446 Sum_probs=5.3
Q ss_pred HHHHHHHhhhc
Q 037502 377 ALKEHAIKQIN 387 (426)
Q Consensus 377 ~~~~~a~~~~~ 387 (426)
.+|+.|+..+.
T Consensus 138 ~~k~~a~~~l~ 148 (181)
T PRK13454 138 EIRAGALESVE 148 (181)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 117
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=70.14 E-value=2.7 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.342 Sum_probs=22.0
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCccc
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGF 66 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F 66 (426)
..|.|..||..|..... ...++|+.||..+
T Consensus 2 ~~y~C~~CG~~~~~~~~----------------------~~~~~Cp~CG~~~ 31 (46)
T PRK00398 2 AEYKCARCGREVELDEY----------------------GTGVRCPYCGYRI 31 (46)
T ss_pred CEEECCCCCCEEEECCC----------------------CCceECCCCCCeE
Confidence 36999999998865543 1158999999654
No 118
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.45 E-value=50 Score=30.44 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=4.6
Q ss_pred HHHHHHHHhhh
Q 037502 376 QALKEHAIKQI 386 (426)
Q Consensus 376 ~~~~~~a~~~~ 386 (426)
.++.++|..+|
T Consensus 143 e~ii~~A~~~I 153 (205)
T PRK06231 143 NLIIFQARQEI 153 (205)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 119
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=69.12 E-value=58 Score=28.67 Aligned_cols=10 Identities=40% Similarity=0.371 Sum_probs=4.1
Q ss_pred HHHHHHHhhh
Q 037502 377 ALKEHAIKQI 386 (426)
Q Consensus 377 ~~~~~a~~~~ 386 (426)
++.+.|..+|
T Consensus 104 ~~~~~a~~~I 113 (164)
T PRK14473 104 KIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 120
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=69.00 E-value=54 Score=29.53 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRI 364 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~ 364 (426)
|++++++|...++.++..+++|+..
T Consensus 67 Ae~~~~eA~~~~~e~e~~L~~A~~e 91 (184)
T CHL00019 67 SEERREEAIEKLEKARARLRQAELE 91 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444433
No 121
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=68.75 E-value=1.5 Score=40.84 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=34.1
Q ss_pred CcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHH
Q 037502 95 KRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAH 152 (426)
Q Consensus 95 ~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H 152 (426)
.|+| |-+|+ +.|-+...|.+|.+ -|-|+|.+|.|.+..--.|..|
T Consensus 9 ~kpw-cwycn-------refddekiliqhqk-----akhfkchichkkl~sgpglsih 53 (341)
T KOG2893|consen 9 DKPW-CWYCN-------REFDDEKILIQHQK-----AKHFKCHICHKKLFSGPGLSIH 53 (341)
T ss_pred CCce-eeecc-------cccchhhhhhhhhh-----hccceeeeehhhhccCCCceee
Confidence 3444 77877 99999999988853 4569999999877766666665
No 122
>PHA00626 hypothetical protein
Probab=68.08 E-value=3.5 Score=29.50 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=12.2
Q ss_pred CccccccCCcccCCc
Q 037502 55 DRYVCEICNQGFQRD 69 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~ 69 (426)
..|+|..||..|...
T Consensus 22 nrYkCkdCGY~ft~~ 36 (59)
T PHA00626 22 DDYVCCDCGYNDSKD 36 (59)
T ss_pred cceEcCCCCCeechh
Confidence 479999999988644
No 123
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=67.54 E-value=42 Score=32.94 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 357 EFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 357 e~~~Akr~~e~a~~e~~~a~~ 377 (426)
++.+|+...+.|+.+++.++.
T Consensus 147 ~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 147 ELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544
No 124
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=67.35 E-value=81 Score=27.12 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAEL 372 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~ 372 (426)
.++|.++++.|+.+.
T Consensus 87 ~~ea~~~~~~A~~~~ 101 (141)
T PRK08476 87 KEEAEKKIEAKKAEL 101 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 125
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.19 E-value=2.3 Score=27.71 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=22.4
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
+.|+.|+..|.-.... + ..+.....|..|+..|.
T Consensus 3 ~~CP~C~~~~~v~~~~-----------~------~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ-----------L------GANGGKVRCGKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHH-----------c------CCCCCEEECCCCCCEEE
Confidence 6799999988665430 1 11112478999998874
No 126
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=66.52 E-value=3.7 Score=24.70 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=8.5
Q ss_pred cccccCCcccC
Q 037502 57 YVCEICNQGFQ 67 (426)
Q Consensus 57 y~C~~Cgk~F~ 67 (426)
-.|+.||..|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 35889998884
No 127
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=66.41 E-value=2.6 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.539 Sum_probs=14.7
Q ss_pred ccccccCCcccCCchhHH
Q 037502 56 RYVCEICNQGFQRDQNLQ 73 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~ 73 (426)
.|.|..||+.|.....+.
T Consensus 28 ~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 28 RRECLACGKRFTTFERVE 45 (154)
T ss_pred eeeccccCCcceEeEecc
Confidence 499999999998776554
No 128
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=66.32 E-value=6.9 Score=38.48 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.6
Q ss_pred ccccccCCcccCCchhHHHHhhh
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRR 78 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~ 78 (426)
.+.|-.|.|.|..+..|+.|||.
T Consensus 195 r~~CLyCekifrdkntLkeHMrk 217 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRK 217 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHh
Confidence 58899999999999999999963
No 129
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=66.30 E-value=96 Score=27.62 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=4.0
Q ss_pred HHHHHHHhhh
Q 037502 377 ALKEHAIKQI 386 (426)
Q Consensus 377 ~~~~~a~~~~ 386 (426)
++.+.|..+|
T Consensus 114 ~~~~~A~~~I 123 (173)
T PRK13453 114 GMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 130
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=66.22 E-value=43 Score=34.19 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 357 EFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 357 e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
+-++.||++|+..-|...+..+||.+.-+|
T Consensus 244 ~ee~tkrm~eqrkrer~e~~aareRI~aqi 273 (506)
T KOG2507|consen 244 TEENTKRMREQRKRERKEGTAARERILAQI 273 (506)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 334567777777777766666666555554
No 131
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=65.86 E-value=3.5 Score=36.65 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=19.5
Q ss_pred ccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
-|+|.+||..+ .|+-|.+||+||
T Consensus 134 ~~vC~vCGy~~--------------------------~ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTH--------------------------EGEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCcc--------------------------cCCCCCcCCCCC
Confidence 69999998753 568899999998
No 132
>PRK06937 type III secretion system protein; Reviewed
Probab=65.74 E-value=64 Score=29.58 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=14.9
Q ss_pred HHHhhhchhhhhhcchhhhhccc
Q 037502 381 HAIKQINSTILRVTCHACKQQFQ 403 (426)
Q Consensus 381 ~a~~~~~~~~~~~~~~~~~~~~~ 403 (426)
..+..+...++.+.+...++-..
T Consensus 86 ~~~~~~e~~l~~Lvl~ia~kil~ 108 (204)
T PRK06937 86 EFYRGVEQQMSEVVLEAVRKILN 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666777777777777665
No 133
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=65.52 E-value=14 Score=30.32 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCeec----c-CCcccCChhhHHHHHHHhcC
Q 037502 159 RGHSC----D-CGRVFSRVESFIEHQDACSK 184 (426)
Q Consensus 159 kp~~C----~-Cgk~F~~~~~L~~H~r~h~~ 184 (426)
..|.| . |+..+.....+.+|.+.+++
T Consensus 79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 34889 5 99999999999999988764
No 134
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=64.57 E-value=74 Score=25.65 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037502 335 AEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIK 384 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~ 384 (426)
.....++.+...|..-...|+++.+.|.+-.+.|+.--+|+.||=|+++.
T Consensus 46 ~a~~~A~~A~~~AdeA~~kA~~A~aaA~~Aqq~A~eAnek~~RMfekam~ 95 (96)
T PF11839_consen 46 SAQSAAASAQQRADEAASKADAALAAAEAAQQTADEANEKADRMFEKAMM 95 (96)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33445666677766777777777777777777777778888888777764
No 135
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=64.47 E-value=77 Score=28.20 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=4.8
Q ss_pred HHHHHhhhchhh
Q 037502 379 KEHAIKQINSTI 390 (426)
Q Consensus 379 ~~~a~~~~~~~~ 390 (426)
|+.|++++...+
T Consensus 128 ~~~a~~~l~~qi 139 (174)
T PRK07352 128 QERVIAQLRREA 139 (174)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 136
>PRK14161 heat shock protein GrpE; Provisional
Probab=64.40 E-value=35 Score=30.76 Aligned_cols=9 Identities=22% Similarity=0.435 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037502 354 AEQEFANAK 362 (426)
Q Consensus 354 Ae~e~~~Ak 362 (426)
+.+||++.|
T Consensus 45 ~~AefeN~r 53 (178)
T PRK14161 45 TTAEIDNTR 53 (178)
T ss_pred HHHHHHHHH
Confidence 333344333
No 137
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=63.89 E-value=8.5 Score=37.87 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=38.3
Q ss_pred cceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC---C------------------CCccccccCCCcccChhhHHHHHH
Q 037502 96 RVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS---N------------------HKQWVCEKCSKGYAVQSDYKAHLK 154 (426)
Q Consensus 96 k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~---~------------------~k~~~C~~C~k~f~~~~~L~~H~~ 154 (426)
....|-.|. ....+..+.+..|+-.+|. | -..+.|-.|.|.|.++..|+.||+
T Consensus 143 fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMr 216 (423)
T KOG2482|consen 143 FSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMR 216 (423)
T ss_pred eeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHH
Confidence 345788876 2556677888888766663 1 123778888888888888888888
Q ss_pred H
Q 037502 155 T 155 (426)
Q Consensus 155 ~ 155 (426)
.
T Consensus 217 k 217 (423)
T KOG2482|consen 217 K 217 (423)
T ss_pred h
Confidence 7
No 138
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=63.41 E-value=14 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=22.0
Q ss_pred ccc----ccCCCcccChhhHHHHHHH-cC
Q 037502 134 WVC----EKCSKGYAVQSDYKAHLKT-CG 157 (426)
Q Consensus 134 ~~C----~~C~k~f~~~~~L~~H~~~-h~ 157 (426)
|.| ..|+..+.....+..|.+. ||
T Consensus 81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 899 9999999999999999988 65
No 139
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.75 E-value=53 Score=34.92 Aligned_cols=62 Identities=31% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 037502 329 QLRLAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 329 ~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~ 390 (426)
+|.++..+....++-...+.+++..|-.||..|||+.+.....|+++...+.+|+.+.-..-
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k 96 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAK 96 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 44455445445555556788888888999999999999999999999988888887755433
No 140
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=62.55 E-value=1.1e+02 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 327 REQLRLAMAEKACAEEARQAAKRQIELAEQEFANA 361 (426)
Q Consensus 327 ~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~A 361 (426)
...+..|...++.++++++....++..|..+..+.
T Consensus 47 ~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 47 QDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555556666666666665555444433
No 141
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=62.04 E-value=3 Score=28.07 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=12.1
Q ss_pred ccccccCCcccCCchh
Q 037502 56 RYVCEICNQGFQRDQN 71 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~ 71 (426)
-|+|..||..|.....
T Consensus 5 ey~C~~Cg~~fe~~~~ 20 (42)
T PF09723_consen 5 EYRCEECGHEFEVLQS 20 (42)
T ss_pred EEEeCCCCCEEEEEEE
Confidence 3899999998865443
No 142
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.33 E-value=5.5 Score=32.58 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=24.4
Q ss_pred ccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHH
Q 037502 18 SCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQ 73 (426)
Q Consensus 18 ~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~ 73 (426)
.|+.||+.|..-. ..|.+|+.||++| -.+.|.
T Consensus 11 idPetg~KFYDLN-----------------------rdPiVsPytG~s~-P~s~fe 42 (129)
T COG4530 11 IDPETGKKFYDLN-----------------------RDPIVSPYTGKSY-PRSYFE 42 (129)
T ss_pred cCccccchhhccC-----------------------CCccccCcccccc-hHHHHH
Confidence 6899999996644 2689999999999 344454
No 143
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=60.83 E-value=5.1 Score=39.43 Aligned_cols=8 Identities=38% Similarity=0.488 Sum_probs=5.9
Q ss_pred cccccccc
Q 037502 17 FSCLENGI 24 (426)
Q Consensus 17 y~C~~Cg~ 24 (426)
-.|.-|||
T Consensus 9 v~CdgC~k 16 (381)
T KOG1280|consen 9 VSCDGCGK 16 (381)
T ss_pred ceeccccc
Confidence 46888887
No 144
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.45 E-value=67 Score=31.92 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~~a~ 376 (426)
+.+|+...+.|+.+++.|+
T Consensus 154 ~~~a~~~~~~a~~~l~~a~ 172 (346)
T PRK10476 154 VDQARTAQRDAEVSLNQAL 172 (346)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 145
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=60.20 E-value=47 Score=33.82 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 353 LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
.++.++.+|+...++|+++++.|+.--+.|-.+++
T Consensus 138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~ 172 (397)
T PRK15030 138 ISKQEYDQALADAQQANAAVTAAKAAVETARINLA 172 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556665566666666666555555544443
No 146
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=59.96 E-value=4.3 Score=29.46 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=8.1
Q ss_pred CccccccCCc
Q 037502 55 DRYVCEICNQ 64 (426)
Q Consensus 55 ~py~C~~Cgk 64 (426)
.+|+|+.||-
T Consensus 47 ~~Y~CP~CGF 56 (59)
T PRK14890 47 NPYTCPKCGF 56 (59)
T ss_pred CceECCCCCC
Confidence 5799999984
No 147
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=59.94 E-value=5.5 Score=32.87 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=4.8
Q ss_pred ccccCCCccc
Q 037502 135 VCEKCSKGYA 144 (426)
Q Consensus 135 ~C~~C~k~f~ 144 (426)
.|..||+.|.
T Consensus 11 ~Cp~CG~kFY 20 (108)
T PF09538_consen 11 TCPSCGAKFY 20 (108)
T ss_pred cCCCCcchhc
Confidence 4444554444
No 148
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=59.92 E-value=76 Score=33.00 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=12.3
Q ss_pred HHHHHHHhhhchhhhhhcchhhhh
Q 037502 377 ALKEHAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 377 ~~~~~a~~~~~~~~~~~~~~~~~~ 400 (426)
..|++|++++...+..+.-....+
T Consensus 108 ~ek~~a~~elr~ei~~lAv~~A~k 131 (445)
T PRK13428 108 LLRAQLTRQLRLELGHESVRQAGE 131 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555554444444444
No 149
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=58.84 E-value=41 Score=35.32 Aligned_cols=6 Identities=33% Similarity=1.104 Sum_probs=2.9
Q ss_pred CCCCCC
Q 037502 221 HWPNLM 226 (426)
Q Consensus 221 ~~p~~~ 226 (426)
.||+..
T Consensus 149 eWpG~t 154 (489)
T PF05262_consen 149 EWPGKT 154 (489)
T ss_pred cCCCCc
Confidence 355543
No 150
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.78 E-value=3.6 Score=38.27 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=16.7
Q ss_pred CccccccCCcccCCchhHHHHhh
Q 037502 55 DRYVCEICNQGFQRDQNLQMHRR 77 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H~r 77 (426)
+.++|++|++.|..+.-.....+
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCce
Confidence 56899999999987754444433
No 151
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=58.74 E-value=11 Score=26.50 Aligned_cols=14 Identities=14% Similarity=0.339 Sum_probs=11.5
Q ss_pred cccccccccccCcC
Q 037502 17 FSCLENGISHNKRK 30 (426)
Q Consensus 17 y~C~~Cg~~f~~~~ 30 (426)
|.|..||..+....
T Consensus 2 y~C~~CgyiYd~~~ 15 (50)
T cd00730 2 YECRICGYIYDPAE 15 (50)
T ss_pred cCCCCCCeEECCCC
Confidence 88999998887654
No 152
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=58.53 E-value=5.1 Score=26.02 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=22.8
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|+.|+..|.-... ++-......+|..|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~-----------------~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE-----------------KIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHH-----------------HCCCCCcEEECCCCCCEeC
Confidence 469999998866554 1112223588999998873
No 153
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=58.47 E-value=41 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~ 377 (426)
.++.+++.|+.+++.|+...+.|+++++.|+.
T Consensus 138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~ 169 (397)
T PRK15030 138 ISKQEYDQALADAQQANAAVTAAKAAVETARI 169 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666654
No 154
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=58.39 E-value=5.1 Score=26.35 Aligned_cols=31 Identities=13% Similarity=0.353 Sum_probs=20.5
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcc
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 65 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~ 65 (426)
.|.|..||..|..... . .. ...-.|+.||..
T Consensus 5 ~y~C~~Cg~~fe~~~~------------~------~~-~~~~~CP~Cg~~ 35 (41)
T smart00834 5 EYRCEDCGHTFEVLQK------------I------SD-DPLATCPECGGD 35 (41)
T ss_pred EEEcCCCCCEEEEEEe------------c------CC-CCCCCCCCCCCc
Confidence 4899999998854332 0 11 345679999974
No 155
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=58.36 E-value=1.2e+02 Score=26.19 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=7.2
Q ss_pred HHHHHhhhchhhhhhcch
Q 037502 379 KEHAIKQINSTILRVTCH 396 (426)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~ 396 (426)
++.|.+++...+......
T Consensus 113 ~~~a~~~l~~~~~~lA~~ 130 (156)
T PRK05759 113 RKRAREELRKQVADLAVA 130 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 156
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=58.13 E-value=4.9 Score=26.26 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|+.|+..|.-... +.-.+....+|..|+..|.
T Consensus 3 i~CP~C~~~f~v~~~-----------------~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD-----------------KLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHH-----------------HcccCCcEEECCCCCcEee
Confidence 469999998866553 1112334689999998884
No 157
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=57.93 E-value=81 Score=29.18 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFA 359 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~ 359 (426)
+-++|+++|.+.++.|+.+.+
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae 63 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETAD 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 158
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=57.66 E-value=4.4 Score=28.36 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=10.4
Q ss_pred cccccCCcccCCc
Q 037502 57 YVCEICNQGFQRD 69 (426)
Q Consensus 57 y~C~~Cgk~F~~~ 69 (426)
|+|..||..|...
T Consensus 6 y~C~~Cg~~fe~~ 18 (52)
T TIGR02605 6 YRCTACGHRFEVL 18 (52)
T ss_pred EEeCCCCCEeEEE
Confidence 8899999888643
No 159
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=57.31 E-value=1.3e+02 Score=26.49 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 360 NAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 360 ~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
++.|+.+.|+.++++ .|++|+++|.
T Consensus 99 e~~r~~~~a~~~I~~---e~~~a~~~l~ 123 (161)
T COG0711 99 ELERIKEAAEAEIEA---EKERALEELR 123 (161)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344555555555543 3344444443
No 160
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=57.28 E-value=67 Score=33.84 Aligned_cols=14 Identities=36% Similarity=0.278 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFA 359 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~ 359 (426)
+++|+++.+++++.
T Consensus 235 Ee~Rqk~d~~~~~~ 248 (591)
T KOG2412|consen 235 EELRQKEDEEAELQ 248 (591)
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666655544
No 161
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=56.96 E-value=5.6 Score=31.25 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=8.6
Q ss_pred CccccccCCCcccC
Q 037502 132 KQWVCEKCSKGYAV 145 (426)
Q Consensus 132 k~~~C~~C~k~f~~ 145 (426)
..|.|..||..|+-
T Consensus 52 GIW~C~kCg~~fAG 65 (89)
T COG1997 52 GIWKCRKCGAKFAG 65 (89)
T ss_pred CeEEcCCCCCeecc
Confidence 44667667666653
No 162
>PRK09098 type III secretion system protein HrpB; Validated
Probab=56.46 E-value=94 Score=29.29 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRI 364 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~ 364 (426)
+=++|+++|.+.++.|+++++++++.
T Consensus 55 Il~~A~~~A~~I~~~A~~e~e~~~~~ 80 (233)
T PRK09098 55 IVAEARAQAEAILEAARREADRSARR 80 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655554443
No 163
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=56.39 E-value=1.1e+02 Score=25.28 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAELDK 374 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~~ 374 (426)
..+++++.+.|+.++++
T Consensus 90 ~~~~~~~~~~a~~~i~~ 106 (132)
T PF00430_consen 90 EKEAERIIEQAEAEIEQ 106 (132)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555666555543
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.79 E-value=87 Score=31.28 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 336 EKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 336 ~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
+.+.++..+..+..+-+.++....++..+.+.|+.+|+.|.-+=+.|..-|+
T Consensus 48 ~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~ 99 (344)
T PF12777_consen 48 EQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALK 99 (344)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555565555666666667777777778888887777776665443
No 165
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=55.72 E-value=1.2e+02 Score=25.46 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 344 RQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 344 r~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
-...+..++.++.+.+.++..|..|..+++.-..|++.....
T Consensus 77 i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~ 118 (141)
T TIGR02473 77 IQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKE 118 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888888887765544
No 166
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=55.64 E-value=1.4e+02 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhchhhhhhcchhhhh
Q 037502 376 QALKEHAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~~~~~ 400 (426)
...|++|+.++...+..+......+
T Consensus 108 ~~ek~~a~~el~~~~~~lA~~~A~k 132 (159)
T PRK09173 108 AQAETDAINAVRSSAVDLAIAAAEK 132 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555544444433
No 167
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=55.64 E-value=86 Score=28.97 Aligned_cols=19 Identities=21% Similarity=0.041 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037502 341 EEARQAAKRQIELAEQEFA 359 (426)
Q Consensus 341 e~ar~~Akrq~e~Ae~e~~ 359 (426)
..||++|..++..|+.+..
T Consensus 48 ~~A~rkA~~I~q~A~~~~~ 66 (224)
T PRK15354 48 SSAYRKAEKIIRDAYRYQR 66 (224)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 168
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=55.47 E-value=20 Score=30.76 Aligned_cols=13 Identities=8% Similarity=-0.089 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 037502 365 RQQAQAELDKAQA 377 (426)
Q Consensus 365 ~e~a~~e~~~a~~ 377 (426)
+++|+..|.+|..
T Consensus 114 ~~~a~~~L~ra~~ 126 (133)
T PRK00539 114 NIKIEQNLMFELL 126 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 169
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=55.37 E-value=79 Score=32.99 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q 037502 361 AKRIRQQAQAELDKAQALKEHAIKQINSTILR 392 (426)
Q Consensus 361 Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~ 392 (426)
|...|..++.|+.+-.+||+.-+|+-.--||+
T Consensus 429 aeeer~~keee~arrefirqey~rrkqlklme 460 (708)
T KOG3654|consen 429 AEEERAPKEEEVARREFIRQEYERRKQLKLME 460 (708)
T ss_pred hHhhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555556666665555444443
No 170
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=55.32 E-value=9.5 Score=25.64 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=10.7
Q ss_pred CCccccccCCCcccCh----hhHHHHHH
Q 037502 131 HKQWVCEKCSKGYAVQ----SDYKAHLK 154 (426)
Q Consensus 131 ~k~~~C~~C~k~f~~~----~~L~~H~~ 154 (426)
....+|..|++.+... +.|..|++
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 4445666666665543 45555553
No 171
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=55.19 E-value=64 Score=32.64 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 354 AEQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 354 Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
.+.++.+|+...+.|++.++.|+.--++|-.++
T Consensus 135 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L 167 (385)
T PRK09859 135 SRQDYDTARTQLNEAEANVTVAKAAVEQATINL 167 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555554444444443
No 172
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=55.08 E-value=6.1 Score=27.64 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=10.6
Q ss_pred CCcccccccccc
Q 037502 15 EPFSCLENGISH 26 (426)
Q Consensus 15 kpy~C~~Cg~~f 26 (426)
..|.|..||+.|
T Consensus 5 ~~Y~C~~Cg~~~ 16 (49)
T COG1996 5 MEYKCARCGREV 16 (49)
T ss_pred EEEEhhhcCCee
Confidence 469999999988
No 173
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=55.06 E-value=1.4e+02 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAELDK 374 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~~ 374 (426)
.+++.++.+.|+.+++.
T Consensus 86 ~~e~~~~~~~a~~~i~~ 102 (147)
T TIGR01144 86 REEREKIKAQARAEIEA 102 (147)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666665543
No 174
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=54.23 E-value=7.9 Score=27.69 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=26.0
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS 129 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~ 129 (426)
.|+..+.|+.|+ ..|.+.-.+.+|.-+.|.
T Consensus 13 DGE~~lrCPRC~-------~~FR~~K~Y~RHVNKaH~ 42 (65)
T COG4049 13 DGEEFLRCPRCG-------MVFRRRKDYIRHVNKAHG 42 (65)
T ss_pred CCceeeeCCchh-------HHHHHhHHHHHHhhHHhh
Confidence 678899999999 999999999999766663
No 175
>PHA00448 hypothetical protein
Probab=53.74 E-value=91 Score=23.22 Aligned_cols=37 Identities=32% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 323 KEQAREQLRLAMAEKACAEEARQAAKRQIELAEQEFA 359 (426)
Q Consensus 323 ~~~a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~ 359 (426)
+-|=.|..++....+..|++++++|++-.++.+.+.+
T Consensus 14 kmY~~EAkrl~~~Ar~~A~~A~~lakqs~~l~~aA~~ 50 (70)
T PHA00448 14 KLYFVEAKRLNDKARKDATRARRLAKQSRELSDAASA 50 (70)
T ss_pred HHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667767777788888888888887777665
No 176
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=53.42 E-value=8.1 Score=30.56 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=12.1
Q ss_pred CCcccccccccccCc
Q 037502 15 EPFSCLENGISHNKR 29 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~ 29 (426)
+|-.|..||..|...
T Consensus 57 ~Pa~CkkCGfef~~~ 71 (97)
T COG3357 57 RPARCKKCGFEFRDD 71 (97)
T ss_pred cChhhcccCcccccc
Confidence 477899999998773
No 177
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=53.07 E-value=1e+02 Score=31.18 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 355 EQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
+.++.+|+...+.|+++++.|+.--++|-.+
T Consensus 138 ~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~ 168 (385)
T PRK09578 138 ERDYTEAVADERQAKAAVASAKAELARAQLQ 168 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555554443444333
No 178
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.03 E-value=21 Score=29.66 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred cccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccc-
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWV- 135 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~- 135 (426)
|.|+.|+-. .=+-|-.|+.|| -......+|.+-+ -.-..-++|.
T Consensus 2 Y~CPrC~sk---------------------------vC~LP~~CpiCg-------LtLVss~HLARSy-HHLfPl~~f~e 46 (112)
T TIGR00622 2 YFCPQCRAK---------------------------VCELPVECPICG-------LTLILSTHLARSY-HHLFPLKAFQE 46 (112)
T ss_pred ccCCCCCCC---------------------------ccCCCCcCCcCC-------CEEeccchHHHhh-hccCCCccccc
Q ss_pred -----------cccCCCcccChhhHHHHHHHcCCCCeecc-CCcccCChhhHHHHHHHhc
Q 037502 136 -----------CEKCSKGYAVQSDYKAHLKTCGTRGHSCD-CGRVFSRVESFIEHQDACS 183 (426)
Q Consensus 136 -----------C~~C~k~f~~~~~L~~H~~~h~~kp~~C~-Cgk~F~~~~~L~~H~r~h~ 183 (426)
|--|.+.|........-. ......|.|. |...|-..-+.-.|...|+
T Consensus 47 v~~~~~~~~~~C~~C~~~f~~~~~~~~~~-~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~ 105 (112)
T TIGR00622 47 IPLEEYNGSRFCFGCQGPFPKPPVSPFDE-LKDSHRYVCAVCKNVFCVDCDVFVHESLHC 105 (112)
T ss_pred ccccccCCCCcccCcCCCCCCcccccccc-cccccceeCCCCCCccccccchhhhhhccC
No 179
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=52.98 E-value=6.1 Score=38.91 Aligned_cols=63 Identities=16% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCCccc--ccccccccCcCCCCCCCCCCCc-------chhccCccccCCCCccccccCCcccCCchhHHHHh
Q 037502 14 SEPFSC--LENGISHNKRKRRPAGTPDPDA-------EVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHR 76 (426)
Q Consensus 14 ~kpy~C--~~Cg~~f~~~~~l~~H~~~~~~-------~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~ 76 (426)
.+||+| +.|.+.+.....|..|.-.-+. .+-.-|.-.-...|+|+|++|.+.+...-.|+-|.
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~ 418 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHR 418 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcceeeeccCcccChhhhhhhccCCCCCcee
Confidence 578999 5599888777766665522111 12223333334579999999999998887776664
No 180
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=52.82 E-value=74 Score=32.17 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 347 AKRQIELAEQEFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 347 Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~ 377 (426)
.+.+++.|+.+++.|+...+.|++.++.|+.
T Consensus 135 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~ 165 (385)
T PRK09859 135 SRQDYDTARTQLNEAEANVTVAKAAVEQATI 165 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666654
No 181
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=52.77 E-value=1.6e+02 Score=29.94 Aligned_cols=13 Identities=46% Similarity=0.511 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 037502 361 AKRIRQQAQAELD 373 (426)
Q Consensus 361 Akr~~e~a~~e~~ 373 (426)
|+...+.|+++++
T Consensus 163 a~~~~~~a~a~l~ 175 (390)
T PRK15136 163 ARDAVASAQAQLD 175 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 182
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.61 E-value=1.8e+02 Score=28.63 Aligned_cols=22 Identities=5% Similarity=0.194 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 037502 365 RQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 365 ~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
++..+.|+....+-|+.+++++
T Consensus 166 ~~~e~ee~~~~~~~~~~~ld~L 187 (309)
T TIGR00570 166 QKEEEEQQMNKRKNKQALLDEL 187 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554
No 183
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=52.55 E-value=1.6e+02 Score=25.68 Aligned_cols=7 Identities=14% Similarity=0.434 Sum_probs=3.5
Q ss_pred HHHHHHH
Q 037502 368 AQAELDK 374 (426)
Q Consensus 368 a~~e~~~ 374 (426)
|+.+.+.
T Consensus 103 a~~~I~~ 109 (159)
T PRK09173 103 AEQKIAQ 109 (159)
T ss_pred HHHHHHH
Confidence 5554444
No 184
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=1.1e+02 Score=31.61 Aligned_cols=36 Identities=31% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHH--------HHHHHHHHHHhhhc
Q 037502 352 ELAEQEFANAKR--IRQQAQAELD--------KAQALKEHAIKQIN 387 (426)
Q Consensus 352 e~Ae~e~~~Akr--~~e~a~~e~~--------~a~~~~~~a~~~~~ 387 (426)
..-|.|+++|.| ||-+|.+|.+ ++...|++.+.++|
T Consensus 205 r~tE~erae~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n 250 (630)
T KOG0742|consen 205 RKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKAN 250 (630)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhh
Confidence 333444444443 4445555555 44455555555554
No 185
>PRK04023 DNA polymerase II large subunit; Validated
Probab=52.23 E-value=12 Score=42.29 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=11.9
Q ss_pred hcchhhhhcccCCC
Q 037502 393 VTCHACKQQFQSRL 406 (426)
Q Consensus 393 ~~~~~~~~~~~~~~ 406 (426)
.-|-.|+.+|+-..
T Consensus 1038 fRC~kC~~kYRR~P 1051 (1121)
T PRK04023 1038 FRCTKCGAKYRRPP 1051 (1121)
T ss_pred eeecccCcccccCC
Confidence 67999999998755
No 186
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=51.40 E-value=12 Score=26.03 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=20.3
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcc
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 65 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~ 65 (426)
|.|..||..+....--..+..-+.... .... .-|+|++|+..
T Consensus 2 y~C~~CgyvYd~~~Gd~~~~i~pGt~F------~~Lp-~~w~CP~C~a~ 43 (47)
T PF00301_consen 2 YQCPVCGYVYDPEKGDPENGIPPGTPF------EDLP-DDWVCPVCGAP 43 (47)
T ss_dssp EEETTTSBEEETTTBBGGGTB-TT--G------GGS--TT-B-TTTSSB
T ss_pred cCCCCCCEEEcCCcCCcccCcCCCCCH------HHCC-CCCcCcCCCCc
Confidence 889999988766554221111111110 1111 24999999864
No 187
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=51.34 E-value=95 Score=28.93 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
|+.++.+|.++.... ++-+.|+.++.+|+.|-+..+ ++..|++.
T Consensus 181 a~~~~aea~~~~~~~-~Aea~a~a~~~~a~gea~a~~-~~~~a~~~ 224 (242)
T cd03405 181 AERIRADADRERTVI-LAEAYREAQEIRGEGDAEAAR-IYAEAYGK 224 (242)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHH-HHHHHHcC
Confidence 333333444443333 333445566667777777554 45456643
No 188
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=50.80 E-value=10 Score=26.43 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=19.3
Q ss_pred ccccccCCcccCCc-----hhHHHHhh-hc
Q 037502 56 RYVCEICNQGFQRD-----QNLQMHRR-RH 79 (426)
Q Consensus 56 py~C~~Cgk~F~~~-----~~L~~H~r-~H 79 (426)
.-.|..|++.+... ++|.+|++ +|
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 46799999988665 69999998 55
No 189
>PLN02316 synthase/transferase
Probab=50.76 E-value=61 Score=37.34 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037502 341 EEARQAAKRQIELAEQEFANAKR 363 (426)
Q Consensus 341 e~ar~~Akrq~e~Ae~e~~~Akr 363 (426)
+.|+++|.|+++..|+.+.++++
T Consensus 260 ~la~e~ae~~~~~ee~~r~~~~k 282 (1036)
T PLN02316 260 KLAKEEAERERQAEEQRRREEEK 282 (1036)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444333
No 190
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=50.26 E-value=1.4e+02 Score=24.54 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 325 QAREQLRLAMAE-KACAEEARQAAKRQIELAEQEFANAK 362 (426)
Q Consensus 325 ~a~~~~~~a~~~-~~~ae~ar~~Akrq~e~Ae~e~~~Ak 362 (426)
.+.++++.|..+ ...-.+||+.|+..++.||.+-....
T Consensus 18 ~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~ 56 (108)
T COG2811 18 SADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLA 56 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555433 23567778888888888887766543
No 191
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=50.24 E-value=81 Score=31.85 Aligned_cols=31 Identities=32% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANAKRIRQQAQAELDKAQAL 378 (426)
Q Consensus 348 krq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~ 378 (426)
+.+++.|+.+++.|+...+.|+++++.|+.-
T Consensus 138 ~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~ 168 (385)
T PRK09578 138 ERDYTEAVADERQAKAAVASAKAELARAQLQ 168 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566667777777777777777777776543
No 192
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=49.84 E-value=1.9e+02 Score=26.40 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
+-.+|+++|...++.|+.+ |+++.+.|+.|.++-
T Consensus 27 Ii~eA~~eAe~Ii~eA~~e---Ae~i~~kAe~ea~~~ 60 (198)
T PRK01558 27 IILEAKEEAEEIIAKAEEE---AKELKAKAEKEANDY 60 (198)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4445555555555555555 555555555554433
No 193
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=49.52 E-value=13 Score=32.42 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
.+..-|.|+.|+..|.....+.. .. . ...|.|+.||
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~---~d-------------~-~~~f~Cp~Cg 130 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL---LD-------------M-DGTFTCPRCG 130 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh---cC-------------C-CCcEECCCCC
Confidence 44567999999999975443321 01 1 2349999998
No 194
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=48.96 E-value=1.9e+02 Score=25.48 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 341 EEARQAAKRQIELAEQEFANA 361 (426)
Q Consensus 341 e~ar~~Akrq~e~Ae~e~~~A 361 (426)
+..+++|....+.+++++++|
T Consensus 50 ~~~~~ea~~~~~~~~~~l~~A 70 (161)
T COG0711 50 ERLKEEAQALLAEYEQELEEA 70 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 195
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=48.95 E-value=1.7e+02 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
..+..+..|+.+.++++..|..|+.++..-..|+|.....
T Consensus 82 ~q~~~v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~~~ 121 (146)
T PRK07720 82 HYQLLVMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQEM 121 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888899999999999999999998888888876654
No 196
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=48.53 E-value=8 Score=34.91 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
.+..-|.|+.|+..|.....+ +.-|.|+.||
T Consensus 113 ~~~~~Y~Cp~C~~rytf~eA~----------------------~~~F~Cp~Cg 143 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFDEAM----------------------EYGFRCPQCG 143 (178)
T ss_pred cCCCEEECCCCCcEEeHHHHh----------------------hcCCcCCCCC
Confidence 344569999999998776654 2359999998
No 197
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.20 E-value=8.5 Score=35.18 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=60.0
Q ss_pred Ccccccc--CCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhh----
Q 037502 55 DRYVCEI--CNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKH---- 128 (426)
Q Consensus 55 ~py~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H---- 128 (426)
..|.|.+ |-+.|.....+..|..+-| --.|.+|. +.|.+..-|..|+..-|
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h----------------~~sCs~C~-------r~~Pt~hLLd~HI~E~HDs~F 134 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLH----------------GNSCSFCK-------RAFPTGHLLDAHILEWHDSLF 134 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcc----------------cchhHHHH-------HhCCchhhhhHHHHHHHHHHH
Confidence 3477876 7788888777777765443 13688888 99999988888875444
Q ss_pred -----CCCCccccc--cCCCcccChhhHHHHHHH-c
Q 037502 129 -----SNHKQWVCE--KCSKGYAVQSDYKAHLKT-C 156 (426)
Q Consensus 129 -----~~~k~~~C~--~C~k~f~~~~~L~~H~~~-h 156 (426)
-|.--|.|- .|+..|.....-+.|+-. |
T Consensus 135 qa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 135 QALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred HHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 255569994 499999999999999887 6
No 198
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.99 E-value=1e+02 Score=34.94 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
++++++..-+.++++|+|..|..++.+++-+..|+.-.++
T Consensus 841 q~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~ 880 (1018)
T KOG2002|consen 841 QEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRER 880 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777888888888888888888777777765544
No 199
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=47.56 E-value=48 Score=36.50 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=4.9
Q ss_pred chhHHHHhhhc
Q 037502 69 DQNLQMHRRRH 79 (426)
Q Consensus 69 ~~~L~~H~r~H 79 (426)
...|..|.++.
T Consensus 349 n~~ldvqlkvf 359 (1102)
T KOG1924|consen 349 NDILDVQLKVF 359 (1102)
T ss_pred cHHHHHHHHHH
Confidence 34444554443
No 200
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=47.54 E-value=1.1e+02 Score=23.80 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 336 EKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 336 ~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
..++|++.++.++|+-++=..|+-+|.-+.|.|=.||++
T Consensus 17 ~i~~a~eQ~~~~~rqehynd~eYt~Aq~~LE~a~neL~~ 55 (84)
T PF10732_consen 17 AIRFAQEQFEEGSRQEHYNDEEYTEAQQMLEEAYNELEK 55 (84)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555443
No 201
>PTZ00121 MAEBL; Provisional
Probab=47.31 E-value=1.5e+02 Score=35.27 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=6.7
Q ss_pred ccccccccccC
Q 037502 18 SCLENGISHNK 28 (426)
Q Consensus 18 ~C~~Cg~~f~~ 28 (426)
.|+.-|++|.-
T Consensus 670 SCPNYGK~i~v 680 (2084)
T PTZ00121 670 SCPNYGKAIIV 680 (2084)
T ss_pred CCCCCCceEEE
Confidence 56666665544
No 202
>PRK14154 heat shock protein GrpE; Provisional
Probab=47.24 E-value=71 Score=29.59 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 037502 353 LAEQEFANAK 362 (426)
Q Consensus 353 ~Ae~e~~~Ak 362 (426)
.+.++|++.|
T Consensus 77 Rl~ADfeNyR 86 (208)
T PRK14154 77 RAQAEMDNLR 86 (208)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 203
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=47.21 E-value=1.1e+02 Score=34.01 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037502 352 ELAEQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 352 e~Ae~e~~~Akr~~e~a~~e~~ 373 (426)
|.+++|..++|.+.|+.+.|+.
T Consensus 255 E~~~eEak~kkKekekek~er~ 276 (1064)
T KOG1144|consen 255 EAQEEEAKEKKKEKEKEKKERK 276 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 204
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=47.06 E-value=1e+02 Score=30.27 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 350 QIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 350 q~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
+++.|+.+++.|+...+.|+++++.|+
T Consensus 123 ~~d~a~~~~~~a~a~l~~a~a~l~~a~ 149 (310)
T PRK10559 123 EIDQANNVLQTVLHQLAKAQATRDLAK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 205
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=47.03 E-value=1.3e+02 Score=23.25 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=32.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 327 REQLRLAMAEK-ACAEEARQAAKRQIELA-EQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 327 ~~~~~~a~~~~-~~ae~ar~~Akrq~e~A-e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
...+..|..+. .+-++|+++|..+++.| +.+...|+++.+.|+.+.+. .++.|+..+
T Consensus 12 ~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~---e~~~a~~e~ 70 (85)
T TIGR02926 12 EELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK---EAEKIREEG 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33344444332 24555666666665554 35677788888888877654 334444443
No 206
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=46.73 E-value=3.9e+02 Score=30.16 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~ 373 (426)
+.+.+...=|-|+++++|+.++++.|.+
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~e 389 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQE 389 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6677777777777777777777766655
No 207
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=46.37 E-value=7.7 Score=39.09 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=20.6
Q ss_pred eecc---CCcccCChhhHHHHHHHhcCC
Q 037502 161 HSCD---CGRVFSRVESFIEHQDACSKG 185 (426)
Q Consensus 161 ~~C~---Cgk~F~~~~~L~~H~r~h~~~ 185 (426)
|-|+ |+.+|...+.+..|.|.|.+.
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkheRq 429 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHERQ 429 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhhhh
Confidence 4574 999999999999999888544
No 208
>PRK14145 heat shock protein GrpE; Provisional
Probab=46.36 E-value=78 Score=29.03 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 351 IELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 351 ~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
++.++.++++++..+-++.+|+++
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN 77 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFEN 77 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 209
>PTZ00121 MAEBL; Provisional
Probab=46.31 E-value=1.1e+02 Score=36.26 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=6.9
Q ss_pred cccCCcccCC
Q 037502 59 CEICNQGFQR 68 (426)
Q Consensus 59 C~~Cgk~F~~ 68 (426)
|+..||+|.-
T Consensus 671 CPNYGK~i~v 680 (2084)
T PTZ00121 671 CPNYGKAIIV 680 (2084)
T ss_pred CCCCCceEEE
Confidence 7777777754
No 210
>PRK09098 type III secretion system protein HrpB; Validated
Probab=45.56 E-value=2.7e+02 Score=26.25 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=9.1
Q ss_pred chhhhhhcchhhhhccc
Q 037502 387 NSTILRVTCHACKQQFQ 403 (426)
Q Consensus 387 ~~~~~~~~~~~~~~~~~ 403 (426)
-..|+.+.....++-+.
T Consensus 112 e~~Lv~lv~~~v~kiv~ 128 (233)
T PRK09098 112 RERLAEIVAAAVEQIVL 128 (233)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555553
No 211
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=45.32 E-value=48 Score=28.84 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 037502 366 QQAQAELDKAQ 376 (426)
Q Consensus 366 e~a~~e~~~a~ 376 (426)
++|+..|.+|.
T Consensus 117 ~~a~~~L~rA~ 127 (145)
T PRK13452 117 EAANKRLKEAD 127 (145)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 212
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.20 E-value=1.7e+02 Score=26.67 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----hhhhhhcchhhhhcccCCCCC
Q 037502 353 LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN-----STILRVTCHACKQQFQSRLPP 408 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 408 (426)
..|.+..+.++-..+.+.+......+++...+.|. ...|.--|-+++.+|+..+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVAAA 188 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445555555555555554445555555555553 567788899999999987654
No 213
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=45.18 E-value=2e+02 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHHhhhchhhhh
Q 037502 379 KEHAIKQINSTILR 392 (426)
Q Consensus 379 ~~~a~~~~~~~~~~ 392 (426)
|+.|+..+...+..
T Consensus 104 ~~~a~~~l~~~~~~ 117 (147)
T TIGR01144 104 KEQAREELRKQVAD 117 (147)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 214
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=45.04 E-value=2.4e+02 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQ 356 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~ 356 (426)
-|+..++|+||++.|.+
T Consensus 96 QeEL~r~a~rEReAa~e 112 (187)
T PF05300_consen 96 QEELARLAQREREAAAE 112 (187)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555555544
No 215
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=44.90 E-value=14 Score=31.17 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=5.9
Q ss_pred CccccccCCCccc
Q 037502 132 KQWVCEKCSKGYA 144 (426)
Q Consensus 132 k~~~C~~C~k~f~ 144 (426)
.|..|+.||..|.
T Consensus 25 ~p~vcP~cg~~~~ 37 (129)
T TIGR02300 25 RPAVSPYTGEQFP 37 (129)
T ss_pred CCccCCCcCCccC
Confidence 3444444444443
No 216
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=3.6 Score=40.43 Aligned_cols=24 Identities=33% Similarity=0.761 Sum_probs=17.9
Q ss_pred CcceeCCCCCCCCCCcccccCCHHHHHHH
Q 037502 95 KRVFVCPEPSCLHHDPCHALGDLVGIKKH 123 (426)
Q Consensus 95 ~k~~~C~~C~c~~~~~~~~f~~~~~l~~H 123 (426)
.++|+|++..|. +.+....+|+.|
T Consensus 347 ~~~~~~~vp~~~-----~~~~n~ng~~~~ 370 (442)
T KOG4124|consen 347 DKPYKCPVPNCD-----KAYKNQNGLKYH 370 (442)
T ss_pred cCCCCCCCCcch-----hhcccCcceeec
Confidence 578889888776 666666677777
No 217
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=44.80 E-value=1.2e+02 Score=28.77 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037502 363 RIRQQAQAELDKAQALKE 380 (426)
Q Consensus 363 r~~e~a~~e~~~a~~~~~ 380 (426)
.+..+|++|-+....+-+
T Consensus 200 ~~~~~a~g~a~~~~~~~~ 217 (261)
T TIGR01933 200 RRINRAKGDVARFTKLLA 217 (261)
T ss_pred HHHHHhhhhHHHHHHHHH
Confidence 334445555544444433
No 218
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=44.64 E-value=12 Score=33.13 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=25.0
Q ss_pred ccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 50 TLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 50 ~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
...+..-|.|+.|+..|.....+. .-|.|+.||
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~eA~~----------------------~~F~Cp~Cg 135 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNEAME----------------------LNFTCPRCG 135 (158)
T ss_pred hccCCCeEECCCCCcEeeHHHHHH----------------------cCCcCCCCC
Confidence 344556699999999988777663 248999998
No 219
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=44.58 E-value=2.1e+02 Score=29.58 Aligned_cols=11 Identities=27% Similarity=0.320 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 037502 364 IRQQAQAELDK 374 (426)
Q Consensus 364 ~~e~a~~e~~~ 374 (426)
..-+|+.|.++
T Consensus 297 ~i~~AeGda~r 307 (419)
T PRK10930 297 TILEAQGEVAR 307 (419)
T ss_pred HHHHhhhhHHH
Confidence 34445555544
No 220
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=44.42 E-value=1e+02 Score=28.88 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 348 krq~e~Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
..+++.|+.++..|+...+.++.+++.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (265)
T TIGR00999 53 RQEFESAEYALEEAQAEVQAAKSELRSA 80 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444443
No 221
>COG1773 Rubredoxin [Energy production and conversion]
Probab=44.41 E-value=26 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.501 Sum_probs=24.5
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCC--CccccccCCc
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLES--DRYVCEICNQ 64 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~--~py~C~~Cgk 64 (426)
+.|.|..||..|.-..--..+-..+... .++ .-+.|+.||-
T Consensus 2 ~~~~C~~CG~vYd~e~Gdp~~gi~pgT~---------fedlPd~w~CP~Cg~ 44 (55)
T COG1773 2 KRWRCSVCGYVYDPEKGDPRCGIAPGTP---------FEDLPDDWVCPECGV 44 (55)
T ss_pred CceEecCCceEeccccCCccCCCCCCCc---------hhhCCCccCCCCCCC
Confidence 3589999999987766433333222111 111 2388999984
No 222
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=44.20 E-value=1.6e+02 Score=30.52 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 352 ELAEQEFANAKRIRQQAQAELDKAQALKEHAI 383 (426)
Q Consensus 352 e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~ 383 (426)
+++++-++..+.+++++++|+..|-..|.+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
T PRK00247 349 EIAQKRRAAEREINREARQERAAAMARARARR 380 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444444444455555555555544443333
No 223
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=44.19 E-value=54 Score=29.49 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 330 LRLAMAEKACAEEARQAAKRQIELAEQ 356 (426)
Q Consensus 330 ~~~a~~~~~~ae~ar~~Akrq~e~Ae~ 356 (426)
++.|+.++..|++..+.|+.+++.|+.
T Consensus 154 ~~~ai~~k~~a~q~~~~a~~~~~~a~~ 180 (196)
T cd03401 154 FTKAVEAKQVAQQEAERAKFVVEKAEQ 180 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444
No 224
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.09 E-value=1.5e+02 Score=35.10 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 345 QAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEH 381 (426)
Q Consensus 345 ~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~ 381 (426)
..+..++..|+.+..+|+..+++|+.+|..+.+-.++
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 522 (1201)
T PF12128_consen 486 NQAQQAVEELQAEEQELRKERDQAEEELRQARRELEE 522 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444333
No 225
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=43.89 E-value=1.5e+02 Score=29.30 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037502 361 AKRIRQQAQAELDKAQALKEHAIK 384 (426)
Q Consensus 361 Akr~~e~a~~e~~~a~~~~~~a~~ 384 (426)
|...+-+|+.|.+.+ ++...|.+
T Consensus 256 a~a~~~~Aegea~a~-~~~~~a~~ 278 (317)
T TIGR01932 256 RTARIIKGEGDAEAA-KIYSDAYG 278 (317)
T ss_pred HHHHHHHhhHHHHHH-HHHHHHHc
Confidence 333444455554433 33333443
No 226
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.61 E-value=2.1e+02 Score=27.89 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=11.1
Q ss_pred CcceeCCCCCCCCCCc
Q 037502 95 KRVFVCPEPSCLHHDP 110 (426)
Q Consensus 95 ~k~~~C~~C~c~~~~~ 110 (426)
.-+.+|+.|+|....+
T Consensus 272 ~i~LkCplc~~Llrnp 287 (427)
T COG5222 272 NISLKCPLCHCLLRNP 287 (427)
T ss_pred CccccCcchhhhhhCc
Confidence 4568999998764433
No 227
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=42.90 E-value=1.1e+02 Score=30.72 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037502 355 EQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~~a~ 376 (426)
.+++++|+-...+|++.++.|.
T Consensus 150 ~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 150 REELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4444445555555555554444
No 228
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=42.67 E-value=25 Score=24.29 Aligned_cols=7 Identities=57% Similarity=0.700 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 037502 368 AQAELDK 374 (426)
Q Consensus 368 a~~e~~~ 374 (426)
|+.+|.+
T Consensus 31 A~~~L~r 37 (48)
T PF00401_consen 31 AQAALKR 37 (48)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 229
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=42.60 E-value=11 Score=28.64 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=26.8
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccc--cCCcccCCchhH
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCE--ICNQGFQRDQNL 72 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~--~Cgk~F~~~~~L 72 (426)
+.|+.||....-+...... ..+.+.-|.|. .||..|.....+
T Consensus 2 m~CP~Cg~~a~irtSr~~s--------------~~~~~~Y~qC~N~eCg~tF~t~es~ 45 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYIT--------------DTTKERYHQCQNVNCSATFITYESV 45 (72)
T ss_pred ccCCCCCCccEEEEChhcC--------------hhhheeeeecCCCCCCCEEEEEEEE
Confidence 5799999766444431111 11345679998 899999876554
No 230
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=40 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAEL 372 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~ 372 (426)
+|...+..|++|-++||..-|+|+++.
T Consensus 181 ~AvE~KQVAQQEAErarFvVeKAeQqk 207 (271)
T KOG3083|consen 181 EAVEAKQVAQQEAERARFVVEKAEQQK 207 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 556666666666666777776666654
No 231
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=42.18 E-value=1.4e+02 Score=30.97 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037502 330 LRLAMAEKACAEEARQAAKRQIE 352 (426)
Q Consensus 330 ~~~a~~~~~~ae~ar~~Akrq~e 352 (426)
.+.+++++..-...|++|+||+.
T Consensus 340 ~~~~k~~~k~~~~~~~~~~~~~~ 362 (429)
T PRK00247 340 KNEAKARKKEIAQKRRAAEREIN 362 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333334445554443
No 232
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.80 E-value=94 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 351 IELAEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 351 ~e~Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
++..++++++.+..+-++++|+++.
T Consensus 46 i~~l~~ei~elkd~~lR~~Ae~eN~ 70 (191)
T PRK14140 46 IAELEAKLDELEERYLRLQADFENY 70 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555554443
No 233
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.77 E-value=17 Score=39.87 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=7.0
Q ss_pred cceeCCCCC
Q 037502 96 RVFVCPEPS 104 (426)
Q Consensus 96 k~~~C~~C~ 104 (426)
.++.|+.||
T Consensus 421 ~p~~Cp~Cg 429 (665)
T PRK14873 421 PDWRCPRCG 429 (665)
T ss_pred cCccCCCCc
Confidence 477888887
No 234
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=41.76 E-value=1.9e+02 Score=23.38 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 335 AEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQ 369 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~ 369 (426)
.....|++|-.-|++-...|++.-+++.|+-|++.
T Consensus 60 eA~~kA~~A~aaA~~Aqq~A~eAnek~~RMfekam 94 (96)
T PF11839_consen 60 EAASKADAALAAAEAAQQTADEANEKADRMFEKAM 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555555556666666666666666666553
No 235
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=41.62 E-value=2.1e+02 Score=29.45 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 355 EQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
..++.+|+-....|++++.+++.-.+.|...+
T Consensus 198 ~~dv~qa~a~~~~a~~~l~~~~~~~~~a~~~L 229 (457)
T COG1538 198 RLDVLQAEAQLASARAQLAAAQAQLAQARNAL 229 (457)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556666666677777777777766666554
No 236
>PRK14139 heat shock protein GrpE; Provisional
Probab=41.56 E-value=74 Score=28.91 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037502 355 EQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~ 373 (426)
+.++++.+..+-++++|++
T Consensus 45 e~e~~elkd~~lR~~Aefe 63 (185)
T PRK14139 45 EAKAAELQDSFLRAKAETE 63 (185)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 237
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=41.56 E-value=1.7e+02 Score=27.20 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
.|+.|+-.=|++..+.+..+..|-.|++.|+
T Consensus 23 ~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr 53 (214)
T PF07795_consen 23 EANEELRKREEQIAHLKDLLKKAYQERDEAR 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555443
No 238
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=41.43 E-value=1.3e+02 Score=30.65 Aligned_cols=10 Identities=40% Similarity=0.425 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 037502 368 AQAELDKAQA 377 (426)
Q Consensus 368 a~~e~~~a~~ 377 (426)
|+.+++.|+.
T Consensus 163 a~~~~~~a~a 172 (390)
T PRK15136 163 ARDAVASAQA 172 (390)
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 239
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.34 E-value=14 Score=40.06 Aligned_cols=27 Identities=26% Similarity=0.710 Sum_probs=19.1
Q ss_pred cccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCC
Q 037502 59 CEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPS 104 (426)
Q Consensus 59 C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~ 104 (426)
|+.|.+.|.+..+= |-| -.+..|+.||
T Consensus 154 C~~C~~EY~dP~nR----RfH---------------AQp~aCp~CG 180 (750)
T COG0068 154 CPFCDKEYKDPLNR----RFH---------------AQPIACPKCG 180 (750)
T ss_pred CHHHHHHhcCcccc----ccc---------------cccccCcccC
Confidence 88888888776652 333 3467899988
No 240
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=41.11 E-value=1.6e+02 Score=29.44 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIEL 353 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~ 353 (426)
+|+..+.+|+++...
T Consensus 245 ~a~~~~a~A~~e~~~ 259 (334)
T PRK11029 245 EAEKLRATADYEVTR 259 (334)
T ss_pred HHHHHHHHHHhHHHH
Confidence 344445455555444
No 241
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=40.64 E-value=1.5e+02 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 353 LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
..+.++.+|+...+.|+++++.|+.--+.|-.+++
T Consensus 119 iS~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~ 153 (310)
T PRK10559 119 MSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLE 153 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888888888876666666554
No 242
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=40.47 E-value=1.8e+02 Score=29.11 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 037502 359 ANAKRIRQ 366 (426)
Q Consensus 359 ~~Akr~~e 366 (426)
++|.++..
T Consensus 262 AeA~~~a~ 269 (334)
T PRK11029 262 AEAERQGR 269 (334)
T ss_pred HHHHHHHH
Confidence 34444333
No 243
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=40.46 E-value=1.4e+02 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
.++++.+.|..+++.|.+..+.++..+......++....+
T Consensus 10 lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~ 49 (141)
T TIGR02473 10 LREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ 49 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555544433
No 244
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=40.36 E-value=1.5e+02 Score=34.40 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 037502 373 DKAQALKEHAIK 384 (426)
Q Consensus 373 ~~a~~~~~~a~~ 384 (426)
+||+.||+.|.+
T Consensus 1689 ~rAe~L~~eA~~ 1700 (1758)
T KOG0994|consen 1689 ERAEQLRTEAEK 1700 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 245
>PRK14156 heat shock protein GrpE; Provisional
Probab=40.18 E-value=2.3e+02 Score=25.51 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 348 krq~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
..+++.+++++++.|..|-++++|+++.+
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~r 61 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQ 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555543
No 246
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=39.91 E-value=12 Score=35.42 Aligned_cols=45 Identities=13% Similarity=0.384 Sum_probs=27.0
Q ss_pred cccccCCCcccChhhHHHHHHH-----cCCCCeecc-CCcccCChhhHHHHHHHhc
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT-----CGTRGHSCD-CGRVFSRVESFIEHQDACS 183 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~-----h~~kp~~C~-Cgk~F~~~~~L~~H~r~h~ 183 (426)
|.|-.|.-.|-. .|.+. -..+++.|. ||.-......|..-.|+|.
T Consensus 183 ~sCLRCK~cfCd-----dHvrrKg~ky~k~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 183 YSCLRCKICFCD-----DHVRRKGFKYEKGKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred hhhhheeeeehh-----hhhhhcccccccCCCCCCCCCCCcccccccceeeeecch
Confidence 555555555543 34443 244778885 8887776666665555554
No 247
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=39.57 E-value=18 Score=30.99 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=17.1
Q ss_pred CCCCccccccCCcccCCchhHHHHhhhccC
Q 037502 52 LESDRYVCEICNQGFQRDQNLQMHRRRHKV 81 (426)
Q Consensus 52 ~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~ 81 (426)
...+-..|-+|||.|.. |++|++.|++
T Consensus 68 I~~d~i~clecGk~~k~---LkrHL~~~~g 94 (132)
T PF05443_consen 68 ITPDYIICLECGKKFKT---LKRHLRTHHG 94 (132)
T ss_dssp B-SS-EE-TBT--EESB---HHHHHHHTT-
T ss_pred cccCeeEEccCCcccch---HHHHHHHccC
Confidence 34556789999999965 6999999963
No 248
>PLN03188 kinesin-12 family protein; Provisional
Probab=39.48 E-value=1.7e+02 Score=34.35 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhhchhhhhhcchhhhh
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAEL-DKAQALKE-HAIKQINSTILRVTCHACKQ 400 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~-~~a~~~~~-~a~~~~~~~~~~~~~~~~~~ 400 (426)
||+|-..|++....||+|-++|+++++.-.-.- ..---|++ .|-.++-...|+..|..|--
T Consensus 1209 aeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes~l~~~~~~~~~~~~~~ 1271 (1320)
T PLN03188 1209 AEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRLPKEAIRPACNDDCM 1271 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCcccccccc
Confidence 455555666666666666666666555443333 11223444 34444433357877776543
No 249
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=39.45 E-value=9.7 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=21.0
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|.|+.||+.--.+.. ..-|+|..|++.|.
T Consensus 34 ~ky~Cp~Cgk~~vkR~a----------------------~GIW~C~~C~~~~A 64 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKRVA----------------------TGIWKCKKCGKKFA 64 (90)
T ss_dssp S-BEESSSSSSEEEEEE----------------------TTEEEETTTTEEEE
T ss_pred CCCcCCCCCCceeEEee----------------------eEEeecCCCCCEEe
Confidence 46999999985422221 13499999999884
No 250
>PRK14153 heat shock protein GrpE; Provisional
Probab=39.41 E-value=1.3e+02 Score=27.50 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 037502 362 KRIRQQAQAELD 373 (426)
Q Consensus 362 kr~~e~a~~e~~ 373 (426)
+..+-++++|++
T Consensus 53 kd~~lR~~AEfe 64 (194)
T PRK14153 53 KEQLFRLAAEFD 64 (194)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 251
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=39.28 E-value=20 Score=23.35 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=20.4
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|..||..|.-..+ .....-+|+.||-.+.
T Consensus 2 r~C~~Cg~~Yh~~~~--------------------pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 2 RICPKCGRIYHIEFN--------------------PPKVEGVCDNCGGELV 32 (36)
T ss_dssp EEETTTTEEEETTTB----------------------SSTTBCTTTTEBEB
T ss_pred cCcCCCCCccccccC--------------------CCCCCCccCCCCCeeE
Confidence 468999998866553 1223467999987554
No 252
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=38.98 E-value=13 Score=29.56 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|.|+.||+.--.+. ....|.|..|++.|.
T Consensus 35 a~y~CpfCgk~~vkR~----------------------a~GIW~C~~C~~~~A 65 (90)
T PTZ00255 35 AKYFCPFCGKHAVKRQ----------------------AVGIWRCKGCKKTVA 65 (90)
T ss_pred CCccCCCCCCCceeee----------------------eeEEEEcCCCCCEEe
Confidence 4799999986322221 124699999999885
No 253
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=38.97 E-value=2.3e+02 Score=25.04 Aligned_cols=24 Identities=50% Similarity=0.547 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 335 AEKACAEEARQAAKRQIELAEQEF 358 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae~e~ 358 (426)
+++.+.|+.+..++.++++|+.|.
T Consensus 117 Ad~~aReev~~R~~~~~~~a~ke~ 140 (158)
T PF02731_consen 117 ADRKAREEVRQRAEMQKELAEKEK 140 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 254
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.55 E-value=2.2e+02 Score=28.48 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 037502 353 LAEQEFANAK 362 (426)
Q Consensus 353 ~Ae~e~~~Ak 362 (426)
.|+.+++.++
T Consensus 148 ~~~~~~~~~~ 157 (370)
T PRK11578 148 TAATELAVKQ 157 (370)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 255
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.52 E-value=1.5e+02 Score=28.59 Aligned_cols=17 Identities=41% Similarity=0.356 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037502 361 AKRIRQQAQAELDKAQA 377 (426)
Q Consensus 361 Akr~~e~a~~e~~~a~~ 377 (426)
+-|+|=++++|++||.|
T Consensus 157 eaRqRV~~~Ie~DKaeR 173 (290)
T KOG2689|consen 157 EARQRVLRQIERDKAER 173 (290)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34555556666666655
No 256
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=38.48 E-value=1.6e+02 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRIRQQAQ 369 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~ 369 (426)
..-.-+-+-.-+++-|.++.+.||.+..+|.
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~ 49 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAK 49 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444566677888888888887777776
No 257
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=38.46 E-value=1.6e+02 Score=30.13 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 349 RQIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 349 rq~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
.+++.++..+++|+...+.|++++++|+
T Consensus 163 ~~ld~~~~~~~~a~a~l~~a~a~l~~a~ 190 (415)
T PRK11556 163 QELDAQQALVSETEGTIKADEASVASAQ 190 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 258
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.35 E-value=22 Score=37.54 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=4.7
Q ss_pred ceeCCCCCC
Q 037502 97 VFVCPEPSC 105 (426)
Q Consensus 97 ~~~C~~C~c 105 (426)
...|.+||-
T Consensus 240 ~l~Ch~Cg~ 248 (505)
T TIGR00595 240 KLRCHYCGY 248 (505)
T ss_pred eEEcCCCcC
Confidence 445555555
No 259
>PRK14158 heat shock protein GrpE; Provisional
Probab=38.01 E-value=1.5e+02 Score=27.13 Aligned_cols=8 Identities=13% Similarity=0.273 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 037502 354 AEQEFANA 361 (426)
Q Consensus 354 Ae~e~~~A 361 (426)
+.++|++.
T Consensus 66 ~~AefeN~ 73 (194)
T PRK14158 66 ERADLENY 73 (194)
T ss_pred HHHHHHHH
Confidence 33333333
No 260
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=38.01 E-value=13 Score=31.60 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=11.9
Q ss_pred CcccccccccccCcC
Q 037502 16 PFSCLENGISHNKRK 30 (426)
Q Consensus 16 py~C~~Cg~~f~~~~ 30 (426)
|+.|..||+.|..-.
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 678889998887655
No 261
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=37.90 E-value=3.3e+02 Score=25.15 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~ 373 (426)
+-++|+++|...++.|+. +|.++.+.|+.+.+
T Consensus 32 Il~eAk~~Ae~Ii~eA~~---EAe~ii~~A~~eae 63 (207)
T PRK01005 32 IVHNAKEQAKRIIAEAQE---EAEKIIRSAEETAD 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 444455555554444443 35555555544443
No 262
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=37.75 E-value=2.1e+02 Score=22.89 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAE-QEFANAKRIRQQAQAELDKAQALK 379 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae-~e~~~Akr~~e~a~~e~~~a~~~~ 379 (426)
++=+||-.+..-+..|+ -.|.+|+...++|..++.+|+.+-
T Consensus 10 ~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~AH~~q 51 (96)
T PF02255_consen 10 HAGDARSLAMEALKAAREGDFEEAEELLKEADEELLKAHKIQ 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333332 345555555556666665555543
No 263
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.61 E-value=1.4e+02 Score=29.70 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 332 LAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 332 ~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
.+..+.+..+....++....+.|+.++++|.-+.+.|+..|..
T Consensus 58 ~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~~ 100 (344)
T PF12777_consen 58 IVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALKS 100 (344)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444566666778888888888888888877764
No 264
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=37.56 E-value=2e+02 Score=29.72 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 325 QAREQLRLAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 325 ~a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
+|++=-..|-.+++.||..++.+++.-+..|+|++. ..+..-|..|+..|+.-|..|
T Consensus 365 EA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas-----~~~kl~l~eaee~r~~~~eel 421 (446)
T PF07227_consen 365 EAKMFQLKADEARREAEGLQRIALAKSEKIEEEYAS-----RYLKLRLNEAEEERKKKFEEL 421 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHH
Confidence 444433445555666777777788888888888874 234444444555555555444
No 265
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=37.55 E-value=13 Score=39.31 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=17.9
Q ss_pred CCCcccccccccccCcCCCCCCCCCCCcchh
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDPDAEVV 44 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l 44 (426)
.+|-.|..||..|........|+..|....+
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~dwh~ 446 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHDDWHR 446 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhhhhhh
Confidence 4455666666666666665566555544433
No 266
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=37.23 E-value=23 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=21.4
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
-|.|+.||..+.-... ..|+ -..|+.||..|-
T Consensus 2 ~~~CP~CG~~iev~~~-------------------~~Ge-iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENP-------------------ELGE-LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCC-------------------ccCC-EEeCCCCCCEEE
Confidence 3789999997744332 1122 468999998763
No 267
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.01 E-value=2.3e+02 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 347 AKRQIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 347 Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
.+.+++..+.+++.++..+.++++++++.+
T Consensus 66 l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 66 LKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666667777766544
No 268
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=36.98 E-value=14 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=9.2
Q ss_pred CccccccCCcccCCchhH
Q 037502 55 DRYVCEICNQGFQRDQNL 72 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L 72 (426)
.-|+|+.|++.|.....+
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~ 144 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEAL 144 (436)
T ss_pred ccccCCccccchhhhHHH
Confidence 345555555555554444
No 269
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.89 E-value=1.6e+02 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 351 IELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 351 ~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
++..++++++.|..+-++++|+++
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN 72 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMEN 72 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 270
>PRK14143 heat shock protein GrpE; Provisional
Probab=36.78 E-value=1.6e+02 Score=27.96 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 037502 353 LAEQEFANAKR 363 (426)
Q Consensus 353 ~Ae~e~~~Akr 363 (426)
.+.++|++.||
T Consensus 92 R~~AdfeN~RK 102 (238)
T PRK14143 92 RIAADFDNFRK 102 (238)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 271
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=36.73 E-value=1.6e+02 Score=28.37 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAEQ 356 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~ 356 (426)
+-+++++++.++++-|+.
T Consensus 93 ~l~~a~~q~e~~~~ea~~ 110 (281)
T PRK06669 93 IIEKLQMQIEREQEEWEE 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 272
>PRK14144 heat shock protein GrpE; Provisional
Probab=36.61 E-value=79 Score=29.06 Aligned_cols=6 Identities=33% Similarity=0.357 Sum_probs=2.2
Q ss_pred HHHHHH
Q 037502 355 EQEFAN 360 (426)
Q Consensus 355 e~e~~~ 360 (426)
.++|++
T Consensus 72 ~AefeN 77 (199)
T PRK14144 72 LAELEN 77 (199)
T ss_pred HHHHHH
Confidence 333333
No 273
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=36.58 E-value=33 Score=29.80 Aligned_cols=39 Identities=13% Similarity=0.332 Sum_probs=19.9
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcc
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGY 143 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f 143 (426)
.....|.|+.|+ ..|.....+.. .+. ...|.|+.||...
T Consensus 95 ~~~~~Y~Cp~C~-------~~y~~~ea~~~----~d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQ-------SKYTFLEANQL----LDM-DGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCC-------CEeeHHHHHHh----cCC-CCcEECCCCCCEE
Confidence 345567777766 55554332211 011 2237777777654
No 274
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=36.52 E-value=14 Score=29.47 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=21.4
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|.|+.||+.--.+. ....|.|..|++.|.
T Consensus 34 a~y~CpfCgk~~vkR~----------------------a~GIW~C~~C~~~~A 64 (91)
T TIGR00280 34 AKYVCPFCGKKTVKRG----------------------STGIWTCRKCGAKFA 64 (91)
T ss_pred cCccCCCCCCCceEEE----------------------eeEEEEcCCCCCEEe
Confidence 4699999986432222 124699999999885
No 275
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=36.26 E-value=23 Score=28.69 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=11.2
Q ss_pred ccccccCCcccCCc
Q 037502 56 RYVCEICNQGFQRD 69 (426)
Q Consensus 56 py~C~~Cgk~F~~~ 69 (426)
|+.|..||..|..-
T Consensus 2 pH~CtrCG~vf~~g 15 (112)
T COG3364 2 PHQCTRCGEVFDDG 15 (112)
T ss_pred Cceecccccccccc
Confidence 67888899888764
No 276
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.26 E-value=19 Score=25.80 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=21.8
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCc
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRD 69 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~ 69 (426)
..+|..||+.|..... --.|+.||..+.+.
T Consensus 5 ~~~C~~Cg~~~~~~dD------------------------iVvCp~CgapyHR~ 34 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDD------------------------IVVCPECGAPYHRD 34 (54)
T ss_pred CccChhhCCcccCCCC------------------------EEECCCCCCcccHH
Confidence 3579999999865443 46799999876543
No 277
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.26 E-value=2.6e+02 Score=30.97 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHA 382 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a 382 (426)
...+|+..|..++..|.-++.-++.|..++.+|...++-|..+
T Consensus 479 L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~e 521 (697)
T PF09726_consen 479 LVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEE 521 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445678888888889889999999998888888777666543
No 278
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=36.26 E-value=2.2e+02 Score=27.09 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037502 361 AKRIRQQAQAELDKAQALKE 380 (426)
Q Consensus 361 Akr~~e~a~~e~~~a~~~~~ 380 (426)
|...+..|+.+.++-..+.+
T Consensus 192 a~a~~~~A~g~~~~~~~~~~ 211 (262)
T cd03407 192 AEQRQAIADGLRESILSLAD 211 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455556666555555554
No 279
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=36.10 E-value=12 Score=24.75 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=9.3
Q ss_pred ccccccCCccc
Q 037502 56 RYVCEICNQGF 66 (426)
Q Consensus 56 py~C~~Cgk~F 66 (426)
-|.|..||..|
T Consensus 28 fy~C~~C~~~w 38 (39)
T PF01096_consen 28 FYVCCNCGHRW 38 (39)
T ss_dssp EEEESSSTEEE
T ss_pred EEEeCCCCCee
Confidence 39999999876
No 280
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=35.93 E-value=26 Score=30.93 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=18.4
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCc
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKG 142 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~ 142 (426)
....-|.|+.|+ ..|+....+. ..|.|+.||..
T Consensus 105 ~~~~~Y~Cp~c~-------~r~tf~eA~~----------~~F~Cp~Cg~~ 137 (158)
T TIGR00373 105 TNNMFFICPNMC-------VRFTFNEAME----------LNFTCPRCGAM 137 (158)
T ss_pred cCCCeEECCCCC-------cEeeHHHHHH----------cCCcCCCCCCE
Confidence 344566777765 5555444332 24777777754
No 281
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.87 E-value=3.8e+02 Score=28.48 Aligned_cols=63 Identities=22% Similarity=0.201 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 037502 326 AREQLRLAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINS 388 (426)
Q Consensus 326 a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~ 388 (426)
...+.+.|+.+...+.+.-+.++.+++.+..++..+..-++.|.-|++-|+.--..|+..|.+
T Consensus 377 l~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 377 LSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444557788888888888888888888888888888888888888764
No 282
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=35.84 E-value=1.8e+02 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037502 353 LAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
.|..+|+.|++..+.++.+|..
T Consensus 20 ~a~~~L~~a~~~~~~~~~~L~~ 41 (146)
T PRK07720 20 KALGEYEEAVSRFEQVAEKLYE 41 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 283
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=35.79 E-value=2.7e+02 Score=30.64 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchhh
Q 037502 368 AQAELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 368 a~~e~~~a~~~~~~a~~~~~~~~ 390 (426)
+=+|.+.+.|+||.|...-+.++
T Consensus 552 a~AE~E~aLRLREeA~aER~~~~ 574 (828)
T PF04094_consen 552 AAAEEESALRLREEALAERDRAL 574 (828)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 33455555666665555444444
No 284
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=35.60 E-value=19 Score=29.88 Aligned_cols=14 Identities=7% Similarity=0.021 Sum_probs=10.4
Q ss_pred CcccccccccccCc
Q 037502 16 PFSCLENGISHNKR 29 (426)
Q Consensus 16 py~C~~Cg~~f~~~ 29 (426)
.+.|..||..|...
T Consensus 70 ~~~C~~Cg~~~~~~ 83 (113)
T PRK12380 70 QAWCWDCSQVVEIH 83 (113)
T ss_pred EEEcccCCCEEecC
Confidence 46899999877554
No 285
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=35.54 E-value=3.9e+02 Score=25.31 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAELDKA 375 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~~a 375 (426)
.++|..+.+.++.++.+.
T Consensus 113 i~~a~~i~~~a~~~~~~~ 130 (255)
T TIGR03825 113 IDEANAIVEEAKDDYEEK 130 (255)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666655544
No 286
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=35.24 E-value=25 Score=32.72 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=21.7
Q ss_pred CCCccccccCCCcccChhhHHHHHHH-cCCC
Q 037502 130 NHKQWVCEKCSKGYAVQSDYKAHLKT-CGTR 159 (426)
Q Consensus 130 ~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~k 159 (426)
.+..|.|..|+|.|.-..-.+.|+.. |.++
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-HHH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCHHH
Confidence 45568999999999999988999988 7543
No 287
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=1.6e+02 Score=27.07 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 323 KEQAREQLRLAMAEKACAEEARQAAKRQIELAEQEFANAKRIRQQA 368 (426)
Q Consensus 323 ~~~a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a 368 (426)
+-+|..+++..+.+...-++- .-.||-|++.+|.+.+.|.|++-
T Consensus 165 klfae~erkRk~~e~r~~~eR--kr~re~eIeaeek~Kr~~E~qKn 208 (250)
T KOG1150|consen 165 KLFAELERKRKELEARANEER--KRQREEEIEAEEKRKREREWQKN 208 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 335555555444443222222 22345555666666666666543
No 288
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=34.64 E-value=23 Score=30.30 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=15.9
Q ss_pred CCccccccCCCcccChhhHHHHHHH-cCCCC
Q 037502 131 HKQWVCEKCSKGYAVQSDYKAHLKT-CGTRG 160 (426)
Q Consensus 131 ~k~~~C~~C~k~f~~~~~L~~H~~~-h~~kp 160 (426)
+.-..|-+|||.|.. |++|+++ ||-.|
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 344689999999885 5899998 47655
No 289
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.31 E-value=2.5e+02 Score=31.24 Aligned_cols=6 Identities=50% Similarity=0.921 Sum_probs=2.7
Q ss_pred eecccc
Q 037502 416 SYMSSA 421 (426)
Q Consensus 416 ~~~~~~ 421 (426)
-||-|+
T Consensus 829 NyMn~g 834 (1102)
T KOG1924|consen 829 NYMNSG 834 (1102)
T ss_pred cccccc
Confidence 455443
No 290
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=34.25 E-value=20 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=15.6
Q ss_pred cccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchh
Q 037502 17 FSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQN 71 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~ 71 (426)
-.|..|++.|..-. +.+.|..||..|-..-.
T Consensus 10 ~~C~~C~~~F~~~~------------------------rrhhCr~CG~~vC~~Cs 40 (69)
T PF01363_consen 10 SNCMICGKKFSLFR------------------------RRHHCRNCGRVVCSSCS 40 (69)
T ss_dssp SB-TTT--B-BSSS-------------------------EEE-TTT--EEECCCS
T ss_pred CcCcCcCCcCCCce------------------------eeEccCCCCCEECCchh
Confidence 47999999994322 46889999998875543
No 291
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=33.55 E-value=23 Score=31.90 Aligned_cols=10 Identities=20% Similarity=0.757 Sum_probs=6.0
Q ss_pred ccccccCCCc
Q 037502 133 QWVCEKCSKG 142 (426)
Q Consensus 133 ~~~C~~C~k~ 142 (426)
.|.|+.||..
T Consensus 136 ~F~Cp~Cg~~ 145 (178)
T PRK06266 136 GFRCPQCGEM 145 (178)
T ss_pred CCcCCCCCCC
Confidence 4666666654
No 292
>PF14353 CpXC: CpXC protein
Probab=33.53 E-value=17 Score=30.62 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=21.8
Q ss_pred HHHHHHHhhhchhhhhhcchhhhhcccCCCC
Q 037502 377 ALKEHAIKQINSTILRVTCHACKQQFQSRLP 407 (426)
Q Consensus 377 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (426)
.||+..+ +.++..+||.+|+..|+...+
T Consensus 26 ~l~e~il---~g~l~~~~CP~Cg~~~~~~~p 53 (128)
T PF14353_consen 26 ELKEKIL---DGSLFSFTCPSCGHKFRLEYP 53 (128)
T ss_pred HHHHHHH---cCCcCEEECCCCCCceecCCC
Confidence 3555555 568999999999999988764
No 293
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=33.52 E-value=38 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=12.0
Q ss_pred ccccCCCcccChhhHHHHHHH
Q 037502 135 VCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 135 ~C~~C~k~f~~~~~L~~H~~~ 155 (426)
.|++|++.+ ....+..|+..
T Consensus 3 ~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 3 QCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHHH
Confidence 466776666 44556666553
No 294
>PRK02224 chromosome segregation protein; Provisional
Probab=33.32 E-value=2e+02 Score=32.45 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHHhhhchhhhhhcchhhhhcccC
Q 037502 380 EHAIKQINSTILRVTCHACKQQFQS 404 (426)
Q Consensus 380 ~~a~~~~~~~~~~~~~~~~~~~~~~ 404 (426)
+.+++.+...+-...|+-|+..|..
T Consensus 439 ~~~l~~~~~~l~~~~Cp~C~r~~~~ 463 (880)
T PRK02224 439 RERVEEAEALLEAGKCPECGQPVEG 463 (880)
T ss_pred HHHHHHHHHHHhcccCCCCCCcCCC
Confidence 3444554444556899999998844
No 295
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=33.25 E-value=2.5e+02 Score=22.39 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 037502 323 KEQAREQLRLA 333 (426)
Q Consensus 323 ~~~a~~~~~~a 333 (426)
...+++.|..|
T Consensus 42 l~~A~~~L~~A 52 (103)
T PF14346_consen 42 LKEAREKLQRA 52 (103)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 296
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=33.21 E-value=16 Score=22.37 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=11.2
Q ss_pred cccccccccccCcCCCCCCCC
Q 037502 17 FSCLENGISHNKRKRRPAGTP 37 (426)
Q Consensus 17 y~C~~Cg~~f~~~~~l~~H~~ 37 (426)
|.|-.|++.|.. .....|..
T Consensus 1 ~sCiDC~~~F~~-~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDFDG-DSYKSHTS 20 (28)
T ss_dssp EEETTTTEEEEG-GGTTT---
T ss_pred CeeecCCCCcCc-CCcCCCCc
Confidence 578888888843 33444443
No 297
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=32.79 E-value=9.4 Score=41.25 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=23.1
Q ss_pred ccccccCCcccCCchhHHHHhhhcc
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
-|.|..|||.|-...++..||++|.
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHHH
Confidence 4999999999999999999999993
No 298
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.66 E-value=7.8 Score=41.97 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=48.3
Q ss_pred ccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhccCccccccccCccccCcc
Q 037502 18 SCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRV 97 (426)
Q Consensus 18 ~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~ 97 (426)
.|+.|-+.+.+..+.+.++++ -.|..||-.|.-...|=--+. ++ +-...
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~YPF------------------~~CT~CGPRfTIi~alPYDR~-nT------------sM~~F 151 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYLYPF------------------INCTNCGPRFTIIEALPYDRE-NT------------SMADF 151 (750)
T ss_pred hhHHHHHHhcCCCCcceeccc------------------cccCCCCcceeeeccCCCCcc-cC------------ccccC
Confidence 688888877777765555531 349999998875554421111 10 11122
Q ss_pred eeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCc
Q 037502 98 FVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKG 142 (426)
Q Consensus 98 ~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~ 142 (426)
--|+.|. +.|.+..+ +|-|. .|..|+.||-.
T Consensus 152 ~lC~~C~-------~EY~dP~n-----RRfHA--Qp~aCp~CGP~ 182 (750)
T COG0068 152 PLCPFCD-------KEYKDPLN-----RRFHA--QPIACPKCGPH 182 (750)
T ss_pred cCCHHHH-------HHhcCccc-----ccccc--ccccCcccCCC
Confidence 2588877 66666655 34443 46799999963
No 299
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=32.65 E-value=1.4e+02 Score=23.26 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037502 352 ELAEQEFANAKRIRQQAQA 370 (426)
Q Consensus 352 e~Ae~e~~~Akr~~e~a~~ 370 (426)
+.|..+|+...-||++=+.
T Consensus 52 ~eakaDLaRLAlIRkqREe 70 (82)
T PF10252_consen 52 DEAKADLARLALIRKQREE 70 (82)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3344455555555544333
No 300
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=32.43 E-value=1.8e+02 Score=30.54 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 340 AEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
.|+||+.|..++..+|+|.+. | |-+++|.++-+- .+.|++++
T Consensus 422 reearrkaeeer~~keee~ar--r--efirqey~rrkq--lklmed~d 463 (708)
T KOG3654|consen 422 REEARRKAEEERAPKEEEVAR--R--EFIRQEYERRKQ--LKLMEDLD 463 (708)
T ss_pred HHHHHHhhHhhhcchhhhhhH--H--HHHHHHHHHHHH--HHHHHhhc
Confidence 445555555554445544432 2 444444443322 25666666
No 301
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=32.36 E-value=15 Score=30.43 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=9.7
Q ss_pred cccccccccccCcC
Q 037502 17 FSCLENGISHNKRK 30 (426)
Q Consensus 17 y~C~~Cg~~f~~~~ 30 (426)
+.|..||..|.-..
T Consensus 71 ~~C~~Cg~~~~~~~ 84 (113)
T PF01155_consen 71 ARCRDCGHEFEPDE 84 (113)
T ss_dssp EEETTTS-EEECHH
T ss_pred EECCCCCCEEecCC
Confidence 57899998886544
No 302
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=32.34 E-value=25 Score=22.59 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=7.0
Q ss_pred ccccccccccCcC
Q 037502 18 SCLENGISHNKRK 30 (426)
Q Consensus 18 ~C~~Cg~~f~~~~ 30 (426)
.|.+||+.|....
T Consensus 5 ~C~eC~~~f~dSy 17 (34)
T PF01286_consen 5 KCDECGKPFMDSY 17 (34)
T ss_dssp E-TTT--EES-SS
T ss_pred hHhHhCCHHHHHH
Confidence 6889999887655
No 303
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=32.28 E-value=21 Score=31.20 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcc
Q 037502 14 SEPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQG 65 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~ 65 (426)
.-+|.|. |+..|-+ ..+|-.+-.|+ .|.|..|+..
T Consensus 115 ~~~Y~C~-C~q~~l~---------------~RRhn~~~~g~-~YrC~~C~gk 149 (156)
T COG3091 115 TYPYRCQ-CQQHYLR---------------IRRHNTVRRGE-VYRCGKCGGK 149 (156)
T ss_pred ceeEEee-cCCccch---------------hhhcccccccc-eEEeccCCce
Confidence 3479999 9987644 33344444566 7999999854
No 304
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=32.11 E-value=2.5e+02 Score=22.70 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 336 EKACAEEARQAAKRQIELAEQ-EFANAKRIRQQAQAELDKAQALKE 380 (426)
Q Consensus 336 ~~~~ae~ar~~Akrq~e~Ae~-e~~~Akr~~e~a~~e~~~a~~~~~ 380 (426)
=..++=+||-.+..-+..|+. .|++|+...++|+.+|..|+.+--
T Consensus 10 iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~~AH~~qt 55 (99)
T TIGR00823 10 LIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCLNEAHLAQT 55 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566655555555544 366677777777777777766543
No 305
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=31.95 E-value=76 Score=27.30 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 341 EEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEH 381 (426)
Q Consensus 341 e~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~ 381 (426)
+++++.|+..++-++.+++-+. +-.+++.+++.+.++++
T Consensus 95 ~~a~~~Ae~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 133 (136)
T PRK13443 95 DEFIAEARELASVALPENEPGD--VDDAAKTLADMLALGAH 133 (136)
T ss_pred HHHHHHHHHHHHhcCcccCCCC--HHHHHHHHHHHHHHHhh
Confidence 3334444444444444433332 33455555556666554
No 306
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=31.80 E-value=3.7e+02 Score=25.49 Aligned_cols=14 Identities=29% Similarity=0.166 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAE 371 (426)
Q Consensus 358 ~~~Akr~~e~a~~e 371 (426)
.++|++++.+|+.+
T Consensus 178 ~~ea~a~~~~Aeg~ 191 (262)
T cd03407 178 EADAEAKRLQGVGA 191 (262)
T ss_pred HHHHHHHHHhhhhH
Confidence 33444555555554
No 307
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=31.54 E-value=1.8e+02 Score=26.94 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~ 390 (426)
..|..++.+|..++.|+.....|....+.|-.-|-..-+.||..+
T Consensus 36 ~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LL 80 (207)
T PF05546_consen 36 KLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELL 80 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777776667666443
No 308
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=31.41 E-value=11 Score=40.71 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.6
Q ss_pred ccccccCCCcccChhhHHHHHHHc
Q 037502 133 QWVCEKCSKGYAVQSDYKAHLKTC 156 (426)
Q Consensus 133 ~~~C~~C~k~f~~~~~L~~H~~~h 156 (426)
.|.|..|+|.|-...++..||++|
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~H 815 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKTH 815 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHHH
Confidence 478888888888777777777775
No 309
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.95 E-value=4.7e+02 Score=29.38 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 037502 361 AKRIRQQAQ 369 (426)
Q Consensus 361 Akr~~e~a~ 369 (426)
|.++.+.|+
T Consensus 570 a~~~~~~a~ 578 (771)
T TIGR01069 570 AQEALKALK 578 (771)
T ss_pred HHHHHHHHH
Confidence 333333333
No 310
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.78 E-value=5.4e+02 Score=25.75 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 351 IELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 351 ~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
...++.++.+++.....++.+++.
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~l~~ 221 (423)
T TIGR01843 198 LLELERERAEAQGELGRLEAELEV 221 (423)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444433
No 311
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=30.70 E-value=23 Score=23.56 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=9.9
Q ss_pred ccccccCCcccC
Q 037502 56 RYVCEICNQGFQ 67 (426)
Q Consensus 56 py~C~~Cgk~F~ 67 (426)
-|+|..||..|.
T Consensus 28 fy~C~~C~~~w~ 39 (40)
T smart00440 28 FYVCTKCGHRWR 39 (40)
T ss_pred EEEeCCCCCEeC
Confidence 499999998774
No 312
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=30.68 E-value=20 Score=21.19 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=8.1
Q ss_pred CCcccccccc
Q 037502 15 EPFSCLENGI 24 (426)
Q Consensus 15 kpy~C~~Cg~ 24 (426)
-+|.|+.||+
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4799999984
No 313
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=30.46 E-value=18 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=21.3
Q ss_pred CCcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccC
Q 037502 15 EPFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQ 67 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~ 67 (426)
..|.|+.||+.--.+. ....|.|..|++.|.
T Consensus 35 a~y~CpfCgk~~vkR~----------------------a~GIW~C~~C~~~~A 65 (90)
T PRK03976 35 AKHVCPVCGRPKVKRV----------------------GTGIWECRKCGAKFA 65 (90)
T ss_pred cCccCCCCCCCceEEE----------------------EEEEEEcCCCCCEEe
Confidence 4699999986432222 124699999999885
No 314
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=30.34 E-value=31 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=20.4
Q ss_pred ccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCCc
Q 037502 18 SCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRD 69 (426)
Q Consensus 18 ~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~ 69 (426)
.|..|++.|.... +.+.|..||+.|-..
T Consensus 4 ~C~~C~~~F~~~~------------------------rk~~Cr~Cg~~~C~~ 31 (57)
T cd00065 4 SCMGCGKPFTLTR------------------------RRHHCRNCGRIFCSK 31 (57)
T ss_pred cCcccCccccCCc------------------------cccccCcCcCCcChH
Confidence 5888888886533 357888999888653
No 315
>PRK14151 heat shock protein GrpE; Provisional
Probab=30.29 E-value=1.8e+02 Score=26.16 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 037502 353 LAEQEFANA 361 (426)
Q Consensus 353 ~Ae~e~~~A 361 (426)
.+.++|++.
T Consensus 45 R~~Ae~eN~ 53 (176)
T PRK14151 45 RAAADLQNV 53 (176)
T ss_pred HHHHHHHHH
Confidence 334444443
No 316
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=30.19 E-value=26 Score=33.09 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=15.1
Q ss_pred CCCCCCCCCcccccccccccCc
Q 037502 8 SAIPCSSEPFSCLENGISHNKR 29 (426)
Q Consensus 8 ~~~~~~~kpy~C~~Cg~~f~~~ 29 (426)
..|++..+-|.|..|+...+++
T Consensus 104 ~~ip~~drqFaC~~Cd~~WwRr 125 (278)
T PF15135_consen 104 NLIPSVDRQFACSSCDHMWWRR 125 (278)
T ss_pred ccccccceeeeccccchHHHhc
Confidence 4566667778888887765554
No 317
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.91 E-value=30 Score=20.02 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=4.8
Q ss_pred cccCCcc
Q 037502 59 CEICNQG 65 (426)
Q Consensus 59 C~~Cgk~ 65 (426)
|..||..
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 7777754
No 318
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.84 E-value=27 Score=30.01 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=12.0
Q ss_pred CCcccccccccccCc
Q 037502 15 EPFSCLENGISHNKR 29 (426)
Q Consensus 15 kpy~C~~Cg~~f~~~ 29 (426)
..|.|..||..|...
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 458999999888664
No 319
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.66 E-value=35 Score=37.42 Aligned_cols=10 Identities=30% Similarity=1.295 Sum_probs=6.1
Q ss_pred ccccccCCCc
Q 037502 133 QWVCEKCSKG 142 (426)
Q Consensus 133 ~~~C~~C~k~ 142 (426)
++.|+.||..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 5666666643
No 320
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=29.61 E-value=31 Score=28.87 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=11.6
Q ss_pred cccccCCCcccChhhHHHHHHH
Q 037502 134 WVCEKCSKGYAVQSDYKAHLKT 155 (426)
Q Consensus 134 ~~C~~C~k~f~~~~~L~~H~~~ 155 (426)
|-|-.|.+-|.+...|..|.++
T Consensus 58 fyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 58 FYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred eehhhhhhhhcchHHHHHHHhc
Confidence 4555555555555555555544
No 321
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=29.56 E-value=2.9e+02 Score=27.12 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037502 342 EARQAAKRQIELAEQEFA 359 (426)
Q Consensus 342 ~ar~~Akrq~e~Ae~e~~ 359 (426)
...+.|+.++++|+.++.
T Consensus 114 ~~l~~ak~~l~~a~~~~~ 131 (331)
T PRK03598 114 AAVKQAQAAYDYAQNFYN 131 (331)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555565554433
No 322
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.48 E-value=24 Score=37.32 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=13.1
Q ss_pred hhhCCCCccccccCCCccc
Q 037502 126 RKHSNHKQWVCEKCSKGYA 144 (426)
Q Consensus 126 r~H~~~k~~~C~~C~k~f~ 144 (426)
..|...+...|.+||....
T Consensus 233 ~~h~~~~~l~Ch~Cg~~~~ 251 (505)
T TIGR00595 233 TYHKKEGKLRCHYCGYQEP 251 (505)
T ss_pred EEecCCCeEEcCCCcCcCC
Confidence 4455667788999986543
No 323
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.37 E-value=28 Score=28.95 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=10.0
Q ss_pred CcccccccccccCc
Q 037502 16 PFSCLENGISHNKR 29 (426)
Q Consensus 16 py~C~~Cg~~f~~~ 29 (426)
.+.|..||..|...
T Consensus 70 ~~~C~~Cg~~~~~~ 83 (115)
T TIGR00100 70 ECECEDCSEEVSPE 83 (115)
T ss_pred EEEcccCCCEEecC
Confidence 36788998777553
No 324
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=29.30 E-value=24 Score=32.12 Aligned_cols=11 Identities=27% Similarity=0.310 Sum_probs=6.1
Q ss_pred Ccccccccccc
Q 037502 16 PFSCLENGISH 26 (426)
Q Consensus 16 py~C~~Cg~~f 26 (426)
||.|.+|.+.|
T Consensus 196 PF~C~iCKkdy 206 (259)
T COG5152 196 PFLCGICKKDY 206 (259)
T ss_pred ceeehhchhhc
Confidence 55555555544
No 325
>KOG4326 consensus Mitochondrial F1F0-ATP synthase, subunit e [Energy production and conversion]
Probab=29.19 E-value=1.8e+02 Score=21.98 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 338 ACAEEARQAAKRQIELAEQEFANAKRIR 365 (426)
Q Consensus 338 ~~ae~ar~~Akrq~e~Ae~e~~~Akr~~ 365 (426)
.+.|+.|+-+-.|+..|..+.+.-|.-|
T Consensus 36 ~~~e~~Rei~a~eKav~da~~a~ekKr~ 63 (81)
T KOG4326|consen 36 EYHEDIREIDAHEKAVADAEEAAEKKRW 63 (81)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 3466666666666666666666555555
No 326
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=28.98 E-value=61 Score=32.60 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=86.0
Q ss_pred CcccccccccccCcCCCCCCCCCC----------------CcchhccC-----c----cccCCCCccccccCCcccCCch
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDP----------------DAEVVSLS-----P----KTLLESDRYVCEICNQGFQRDQ 70 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~----------------~~~~l~~h-----~----~~h~~~~py~C~~Cgk~F~~~~ 70 (426)
.|.|..|...|......+.|++.- +.+.+... . ..-.+..++.|.+|.|.|....
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~ 82 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK 82 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence 489999999999887777777431 11111000 0 0123346799999999999998
Q ss_pred hHHHHhh--hccC---------cc------ccc--------ccc--------Cc------------------------cc
Q 037502 71 NLQMHRR--RHKV---------PW------KLL--------KRE--------TP------------------------VV 93 (426)
Q Consensus 71 ~L~~H~r--~H~~---------~~------~~~--------~~~--------~~------------------------~~ 93 (426)
....|+. .|.. +. .+. ..+ .. ..
T Consensus 83 a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Edi~~d~~~e~ 162 (390)
T KOG2785|consen 83 AHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEEDIEEDGDDED 162 (390)
T ss_pred hHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhhhhhccchhc
Confidence 8888874 3310 00 000 000 00 00
Q ss_pred cCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC-------------------C---CCccccccCC---CcccChhh
Q 037502 94 RKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS-------------------N---HKQWVCEKCS---KGYAVQSD 148 (426)
Q Consensus 94 ~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~-------------------~---~k~~~C~~C~---k~f~~~~~ 148 (426)
...|-.|-.|+ +.|.+......||.+.|. | ...|.|-.|. +.|.....
T Consensus 163 e~~Pt~CLfC~-------~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~slea 235 (390)
T KOG2785|consen 163 ELIPTDCLFCD-------KKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEA 235 (390)
T ss_pred ccCCcceeecC-------CCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHH
Confidence 11245688877 889999999999766664 1 3458999998 99999999
Q ss_pred HHHHHHH
Q 037502 149 YKAHLKT 155 (426)
Q Consensus 149 L~~H~~~ 155 (426)
.+.||..
T Consensus 236 vr~HM~~ 242 (390)
T KOG2785|consen 236 VRAHMRD 242 (390)
T ss_pred HHHHHhh
Confidence 9999988
No 327
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=28.74 E-value=5.5e+02 Score=25.83 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhhc
Q 037502 373 DKAQALKEHAIKQIN 387 (426)
Q Consensus 373 ~~a~~~~~~a~~~~~ 387 (426)
..|+.-+++|-.++.
T Consensus 193 ~~a~a~~~~A~l~L~ 207 (352)
T COG1566 193 ASAEAALDQAKLDLE 207 (352)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444444444444433
No 328
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=28.67 E-value=4.2e+02 Score=25.74 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANA 361 (426)
Q Consensus 348 krq~e~Ae~e~~~A 361 (426)
+.+++.|+.++++.
T Consensus 121 ~~~l~~a~~~~~r~ 134 (334)
T TIGR00998 121 REKLLQAELDLRRR 134 (334)
T ss_pred HHHHHHhHHHHHHH
Confidence 33333333333333
No 329
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.66 E-value=1.7e+02 Score=23.13 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 348 krq~e~Ae~e~~~Akr~~e~a~~e~~~a~~ 377 (426)
+++++.=++|-++.+.....|+.++++++.
T Consensus 29 ~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 29 KKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555543
No 330
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=28.31 E-value=5.4e+02 Score=25.46 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 037502 339 CAEEARQA 346 (426)
Q Consensus 339 ~ae~ar~~ 346 (426)
..|.+|..
T Consensus 134 qeEqa~k~ 141 (387)
T COG3064 134 QEEQARKA 141 (387)
T ss_pred HHHHHHHH
Confidence 34444343
No 331
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=28.26 E-value=34 Score=24.00 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.7
Q ss_pred CccccccCCccc
Q 037502 55 DRYVCEICNQGF 66 (426)
Q Consensus 55 ~py~C~~Cgk~F 66 (426)
+.|.|..||..+
T Consensus 36 ~r~~C~~Cgyt~ 47 (50)
T PRK00432 36 DRWHCGKCGYTE 47 (50)
T ss_pred CcEECCCcCCEE
Confidence 468999999765
No 332
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.14 E-value=29 Score=28.96 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=10.1
Q ss_pred CcccccccccccCc
Q 037502 16 PFSCLENGISHNKR 29 (426)
Q Consensus 16 py~C~~Cg~~f~~~ 29 (426)
.+.|..||..|...
T Consensus 71 ~~~C~~Cg~~~~~~ 84 (117)
T PRK00564 71 ELECKDCSHVFKPN 84 (117)
T ss_pred EEEhhhCCCccccC
Confidence 36799999777553
No 333
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.13 E-value=20 Score=33.54 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCCcccccccccccCcCCC
Q 037502 14 SEPFSCLENGISHNKRKRR 32 (426)
Q Consensus 14 ~kpy~C~~Cg~~f~~~~~l 32 (426)
.+.+.|++|+..|..+..+
T Consensus 17 kk~ieCPvC~tkFkkeev~ 35 (267)
T COG1655 17 KKTIECPVCNTKFKKEEVK 35 (267)
T ss_pred hceeccCcccchhhhhhee
Confidence 4578999999999888753
No 334
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=27.98 E-value=1.9e+02 Score=19.26 Aligned_cols=29 Identities=41% Similarity=0.408 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 323 KEQAREQLRLAMAEKACAEEARQAAKRQI 351 (426)
Q Consensus 323 ~~~a~~~~~~a~~~~~~ae~ar~~Akrq~ 351 (426)
+..+.|..+.+.+++..+.+|-..+..|+
T Consensus 4 K~kaaEa~k~aEaeKqraAEA~k~aEaeK 32 (42)
T PF07046_consen 4 KRKAAEATKVAEAEKQRAAEATKAAEAEK 32 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554444444433333
No 335
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=27.85 E-value=2.7e+02 Score=28.74 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 037502 344 RQAAKRQIELA 354 (426)
Q Consensus 344 r~~Akrq~e~A 354 (426)
+.+|.+.++.|
T Consensus 280 ~gea~~ii~~A 290 (419)
T PRK10930 280 NGQAQRILEEA 290 (419)
T ss_pred HHHHHHHHHHH
Confidence 33455555433
No 336
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.67 E-value=1.9e+02 Score=27.17 Aligned_cols=14 Identities=7% Similarity=0.088 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 037502 341 EEARQAAKRQIELA 354 (426)
Q Consensus 341 e~ar~~Akrq~e~A 354 (426)
|..|+.++|+++.+
T Consensus 108 eNyRKR~~rE~e~~ 121 (227)
T PRK14157 108 INYRNRTQKEQDRF 121 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 337
>PRK05580 primosome assembly protein PriA; Validated
Probab=27.62 E-value=41 Score=36.96 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.8
Q ss_pred ceeCCCCCC
Q 037502 97 VFVCPEPSC 105 (426)
Q Consensus 97 ~~~C~~C~c 105 (426)
...|.+||-
T Consensus 408 ~l~Ch~Cg~ 416 (679)
T PRK05580 408 RLRCHHCGY 416 (679)
T ss_pred eEECCCCcC
Confidence 445555555
No 338
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=6.1e+02 Score=26.40 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhchhh
Q 037502 371 ELDKAQALKEHAIKQINSTI 390 (426)
Q Consensus 371 e~~~a~~~~~~a~~~~~~~~ 390 (426)
-+.+|...||.-+..||.|.
T Consensus 245 l~~~~n~eRekwl~aInTtf 264 (630)
T KOG0742|consen 245 LRLKANEEREKWLEAINTTF 264 (630)
T ss_pred HHHHhhhHHHHHHHHHhhhH
Confidence 34556666666666665443
No 339
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=4.8e+02 Score=25.24 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 347 AKRQIELAEQEFANAKRIRQQAQAE 371 (426)
Q Consensus 347 Akrq~e~Ae~e~~~Akr~~e~a~~e 371 (426)
|++-...+|.-++=-||-++.|+.+
T Consensus 132 a~~r~q~~e~~~~~qkRrreK~e~~ 156 (290)
T KOG2689|consen 132 AKRRLQDDEMRRAAQKRRREKAEDE 156 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3333333333333334444443333
No 340
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK14141 heat shock protein GrpE; Provisional
Probab=27.46 E-value=2e+02 Score=26.63 Aligned_cols=9 Identities=22% Similarity=0.339 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037502 354 AEQEFANAK 362 (426)
Q Consensus 354 Ae~e~~~Ak 362 (426)
+.++|++.|
T Consensus 57 ~~Ae~eN~R 65 (209)
T PRK14141 57 LAAEMENLR 65 (209)
T ss_pred HHHHHHHHH
Confidence 333344433
No 342
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=27.35 E-value=44 Score=23.02 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=10.2
Q ss_pred ccccccCCcccCC
Q 037502 56 RYVCEICNQGFQR 68 (426)
Q Consensus 56 py~C~~Cgk~F~~ 68 (426)
.|.|..||..+.-
T Consensus 20 ~~vC~~Cg~~~~~ 32 (52)
T smart00661 20 RFVCRKCGYEEPI 32 (52)
T ss_pred EEECCcCCCeEEC
Confidence 6899999976643
No 343
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=27.29 E-value=4.7e+02 Score=23.69 Aligned_cols=10 Identities=40% Similarity=0.322 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 037502 325 QAREQLRLAM 334 (426)
Q Consensus 325 ~a~~~~~~a~ 334 (426)
+|..-++.|.
T Consensus 42 qA~~Il~~Ae 51 (191)
T PF06188_consen 42 QAEQILQQAE 51 (191)
T ss_pred HHHHHHHHHH
Confidence 3333334443
No 344
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.25 E-value=32 Score=24.94 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=8.9
Q ss_pred CccccccCCcc
Q 037502 55 DRYVCEICNQG 65 (426)
Q Consensus 55 ~py~C~~Cgk~ 65 (426)
..+.|..||..
T Consensus 36 D~irCReCG~R 46 (62)
T KOG3507|consen 36 DVIRCRECGYR 46 (62)
T ss_pred CcEehhhcchH
Confidence 47999999964
No 345
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=27.01 E-value=4.3e+02 Score=23.08 Aligned_cols=40 Identities=28% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
..++-.+.-|.|..+|-.+.+.+++.|..++..|+.-..+
T Consensus 107 ~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~Lr~k 146 (152)
T PF15186_consen 107 ELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLLRWK 146 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666667777777777777777777654433
No 346
>PRK14146 heat shock protein GrpE; Provisional
Probab=26.98 E-value=2.1e+02 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.323 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 349 RQIELAEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 349 rq~e~Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
.+++.++++++..+..+-++++||++.
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~ 87 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNF 87 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555544
No 347
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.92 E-value=4.3e+02 Score=23.81 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 354 AEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 354 Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
|+..+++.+...+..+.|+..
T Consensus 151 a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 151 AKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 348
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=26.81 E-value=3.5e+02 Score=22.04 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 335 AEKACAEEARQAAKRQIELAE-QEFANAKRIRQQAQAELDKAQALKE 380 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae-~e~~~Akr~~e~a~~e~~~a~~~~~ 380 (426)
.=..++=+||-.+..-+..|+ -.|++|+...++|+.++.+|+.+--
T Consensus 12 ~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~~AH~~qt 58 (104)
T PRK09591 12 EIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEELLEAHHAQT 58 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566665554444443 3566666666667777766666543
No 349
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=26.57 E-value=3e+02 Score=23.44 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANA 361 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~A 361 (426)
.|+++++.++..+...
T Consensus 27 ~a~~~~~~~~~~L~~L 42 (147)
T PRK05689 27 QARQELQQAEQQLKML 42 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 350
>PRK06328 type III secretion system protein; Validated
Probab=26.28 E-value=1.9e+02 Score=26.94 Aligned_cols=44 Identities=30% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 339 CAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
+.++.++.-....++=+.++++|.+++..|+.|.++ +|++|..+
T Consensus 20 l~~~~~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~---i~eeA~~e 63 (223)
T PRK06328 20 LSPEAFSALLDAQELLEKTKEDSEAYTQETHEECEK---LREEAKNQ 63 (223)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
No 351
>PRK12472 hypothetical protein; Provisional
Probab=26.15 E-value=2.2e+02 Score=29.75 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
.|.+.+..|+.||+.|-+..+.|.-+-++
T Consensus 229 ~~e~~~~~a~~~l~~adk~l~~a~~d~~~ 257 (508)
T PRK12472 229 KLERAKARADAELKRADKALAAAKTDEAK 257 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 44566666677777777776666444333
No 352
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=26.08 E-value=1.2e+02 Score=28.39 Aligned_cols=30 Identities=37% Similarity=0.449 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 356 QEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 356 ~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
.||-+|-...|.||+|-|||+.+-|.|-.+
T Consensus 177 kEFt~AvE~KQVAQQEAErarFvVeKAeQq 206 (271)
T KOG3083|consen 177 KEFTEAVEAKQVAQQEAERARFVVEKAEQQ 206 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577778888888888888888777777644
No 353
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.92 E-value=6e+02 Score=28.55 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 037502 368 AQAELDKAQAL 378 (426)
Q Consensus 368 a~~e~~~a~~~ 378 (426)
|+..+++|++.
T Consensus 575 a~~~l~~a~~~ 585 (782)
T PRK00409 575 AQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 354
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=25.89 E-value=73 Score=27.95 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=20.6
Q ss_pred ccccccCCcccC------CchhHHHHhh-hccCccccccccCccccCcceeCCCCCCC
Q 037502 56 RYVCEICNQGFQ------RDQNLQMHRR-RHKVPWKLLKRETPVVRKRVFVCPEPSCL 106 (426)
Q Consensus 56 py~C~~Cgk~F~------~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~~~C~~C~c~ 106 (426)
..+|..|+|-|. ..+.+..|+. ..|.+.. .+.....|+..++|-.||+.
T Consensus 14 vv~C~~c~kWFCNg~~~~s~SHIv~HLv~srh~ev~--LH~~s~lgdt~leCy~Cg~~ 69 (152)
T PF09416_consen 14 VVKCNTCNKWFCNGRGNTSGSHIVNHLVRSRHKEVS--LHPDSPLGDTVLECYNCGSR 69 (152)
T ss_dssp EEEETTTTEEEES--TTSSS-HHHHHHHHHT---EE--E-TTSTT-S-B---TTT---
T ss_pred EeEcCCCCcEeecCCCCCcccHHHHHHHHccCCcee--eCCCCCCCCcEEEEEecCCC
Confidence 477888888884 4466667753 2222111 11112256777888888754
No 355
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=25.86 E-value=27 Score=21.76 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.9
Q ss_pred ccccccCCcc
Q 037502 56 RYVCEICNQG 65 (426)
Q Consensus 56 py~C~~Cgk~ 65 (426)
.|.|+.|+..
T Consensus 19 ~~vCp~C~~e 28 (30)
T PF08274_consen 19 LLVCPECGHE 28 (30)
T ss_dssp SEEETTTTEE
T ss_pred EEeCCccccc
Confidence 5899999854
No 356
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=25.77 E-value=4.2e+02 Score=22.54 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
..+..++.++.+.++++..|..|..++..-..|+|.-+..
T Consensus 82 ~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~ 121 (147)
T PRK05689 82 QQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTE 121 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999999988888888765543
No 357
>PTZ00491 major vault protein; Provisional
Probab=25.57 E-value=3.2e+02 Score=30.71 Aligned_cols=24 Identities=50% Similarity=0.642 Sum_probs=11.3
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Q 037502 322 LKEQAREQL-RLAMAEKACAEEARQ 345 (426)
Q Consensus 322 ~~~~a~~~~-~~a~~~~~~ae~ar~ 345 (426)
.+++|+..| |+-|...+.||++|.
T Consensus 675 ~eQea~g~Lerqk~~d~~~aE~~r~ 699 (850)
T PTZ00491 675 LEQEARGRLERQKMHDKAKAEEQRT 699 (850)
T ss_pred HHHHhhchhHHHhhhhHHHHHHHHH
Confidence 344444444 334444455555554
No 358
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.51 E-value=35 Score=28.33 Aligned_cols=13 Identities=8% Similarity=-0.156 Sum_probs=9.7
Q ss_pred CcccccccccccC
Q 037502 16 PFSCLENGISHNK 28 (426)
Q Consensus 16 py~C~~Cg~~f~~ 28 (426)
.+.|..||..|..
T Consensus 70 ~~~C~~Cg~~~~~ 82 (114)
T PRK03681 70 ECWCETCQQYVTL 82 (114)
T ss_pred EEEcccCCCeeec
Confidence 4689999977754
No 359
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=25.42 E-value=3.8e+02 Score=27.89 Aligned_cols=32 Identities=6% Similarity=0.094 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 356 QEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 356 ~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
.++.+|+-....++.++..++.-.+.+...+.
T Consensus 233 ~dv~~a~~~l~~a~~~l~~~~~~~~~a~~~L~ 264 (488)
T PRK09915 233 VPFHGARAQILAVDKQIAAVKGQITETRESLR 264 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555543
No 360
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=25.32 E-value=28 Score=30.05 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=20.1
Q ss_pred ccccccCCcccCCchhHHHHhhhc
Q 037502 56 RYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 56 py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
+|.|-.||-.|.+..-|..|..+-
T Consensus 129 ~ysC~~CG~kyCsv~C~~~HneTR 152 (156)
T KOG3362|consen 129 KYSCVNCGTKYCSVRCLKTHNETR 152 (156)
T ss_pred hhHHHhcCCceeechhhhhccccc
Confidence 589999999999999888886553
No 361
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=25.27 E-value=1.4e+02 Score=20.89 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFA 359 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~ 359 (426)
-|.|.+.+||.|-+
T Consensus 16 ~aerI~~mae~eq~ 29 (50)
T PF10097_consen 16 AAERIFAMAEKEQE 29 (50)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666555
No 362
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=25.23 E-value=52 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=19.3
Q ss_pred CccccccCCcccCCchhHHHHhhhccCccccccccCccccCcceeCCCCCC
Q 037502 55 DRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSC 105 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~~~C~~C~c 105 (426)
.|++...||..|.... +..+++ ..+...|++-||
T Consensus 23 ~PV~s~~C~H~fek~a-I~~~i~----------------~~~~~~CPv~GC 56 (57)
T PF11789_consen 23 DPVKSKKCGHTFEKEA-ILQYIQ----------------RNGSKRCPVAGC 56 (57)
T ss_dssp SEEEESSS--EEEHHH-HHHHCT----------------TTS-EE-SCCC-
T ss_pred CCcCcCCCCCeecHHH-HHHHHH----------------hcCCCCCCCCCC
Confidence 4788889999997554 444432 245788999775
No 363
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.19 E-value=41 Score=34.37 Aligned_cols=35 Identities=29% Similarity=0.633 Sum_probs=18.8
Q ss_pred CCCccccccCCCcccChhhHHHHHHH-cCCCCeecc-CCc
Q 037502 130 NHKQWVCEKCSKGYAVQSDYKAHLKT-CGTRGHSCD-CGR 167 (426)
Q Consensus 130 ~~k~~~C~~C~k~f~~~~~L~~H~~~-h~~kp~~C~-Cgk 167 (426)
....|.|+.|.+.|+....+. .. -....|.|. |+-
T Consensus 125 ~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCGG 161 (436)
T ss_pred ccccccCCccccchhhhHHHH---hhcccCceEEEecCCC
Confidence 344577777777776554432 11 234456664 643
No 364
>PHA00448 hypothetical protein
Probab=24.83 E-value=1.8e+02 Score=21.66 Aligned_cols=8 Identities=50% Similarity=0.372 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 037502 347 AKRQIELA 354 (426)
Q Consensus 347 Akrq~e~A 354 (426)
|||.-..|
T Consensus 20 Akrl~~~A 27 (70)
T PHA00448 20 AKRLNDKA 27 (70)
T ss_pred HHHhhHHH
Confidence 33333333
No 365
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=24.81 E-value=7.6e+02 Score=25.25 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 037502 365 RQQAQAE 371 (426)
Q Consensus 365 ~e~a~~e 371 (426)
||.++.+
T Consensus 349 R~eiR~~ 355 (506)
T KOG2441|consen 349 REEIRRD 355 (506)
T ss_pred HHHHHHH
Confidence 5544443
No 366
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=4e+02 Score=29.77 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 350 QIELAEQEFANAKRIRQQAQAELDKAQALKEHAI 383 (426)
Q Consensus 350 q~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~ 383 (426)
++-.+..|....|+.|..|+..+-.|+-=+++|.
T Consensus 260 Eak~kkKekekek~er~KaeGklLTakQK~~~a~ 293 (1064)
T KOG1144|consen 260 EAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAAL 293 (1064)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHH
Confidence 3334445555566666666665555544444443
No 367
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=24.63 E-value=4.1e+02 Score=22.16 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 333 AMAEKACAEEARQAAKRQIELAEQ-EFANAKRIRQQAQAELDKAQALKE 380 (426)
Q Consensus 333 a~~~~~~ae~ar~~Akrq~e~Ae~-e~~~Akr~~e~a~~e~~~a~~~~~ 380 (426)
++.=..++-+||-.+..-+..|++ .|++|+...++|+.++.+|+.+--
T Consensus 21 ~~~II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~qt 69 (115)
T PRK10454 21 VMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQT 69 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777766666555543 677777777778877777776654
No 368
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=24.41 E-value=4.2e+02 Score=27.14 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 355 EQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 355 e~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
+.++.+++...+++++.++.|+.--+.|-.++
T Consensus 162 ~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L 193 (415)
T PRK11556 162 RQELDAQQALVSETEGTIKADEASVASAQLQL 193 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666665554444444433
No 369
>PRK09039 hypothetical protein; Validated
Probab=24.18 E-value=4.7e+02 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQ 376 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~ 376 (426)
....+++.+|+..+.++.+++..+.+|.+|.
T Consensus 155 ~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 155 ALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555553
No 370
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=24.03 E-value=4.5e+02 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 350 QIELAEQEFANAKRIRQQAQAELDKA 375 (426)
Q Consensus 350 q~e~Ae~e~~~Akr~~e~a~~e~~~a 375 (426)
+++.++.+++.++...+.++.+++.+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~l~~~ 128 (322)
T TIGR01730 103 DLDDAKAAVEAAQADLEAAKASLASA 128 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444444433
No 371
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=23.90 E-value=4.4e+02 Score=22.11 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 344 RQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 344 r~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
+.....++..+-..+..++.+.+.++..++.++..-+.+.++.
T Consensus 103 ~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (188)
T PF02321_consen 103 KRELRLEVKQAYYQLLQAQEQLEIAEEQLELAKEQLEIAEKRY 145 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555444444443
No 372
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.49 E-value=27 Score=24.71 Aligned_cols=26 Identities=35% Similarity=0.668 Sum_probs=16.2
Q ss_pred CCccccccCCcccCCchhHHHHhhhc
Q 037502 54 SDRYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 54 ~~py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
...|.|+.|+..|--.-.+-.|...|
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~LH 44 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHETLH 44 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTTS-
T ss_pred CCeEECCCCCCccccCcChhhhcccc
Confidence 45799999999999998888887777
No 373
>PRK04351 hypothetical protein; Provisional
Probab=23.39 E-value=42 Score=29.33 Aligned_cols=33 Identities=21% Similarity=0.602 Sum_probs=21.3
Q ss_pred CcccccccccccCcCCCCCCCCCCCcchhccCccccCCCCccccccCCcccCC
Q 037502 16 PFSCLENGISHNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQR 68 (426)
Q Consensus 16 py~C~~Cg~~f~~~~~l~~H~~~~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~ 68 (426)
.|.|..||..+.+... + +...|.|..|+-.+..
T Consensus 112 ~Y~C~~Cg~~~~r~Rr-------------------~-n~~~yrCg~C~g~L~~ 144 (149)
T PRK04351 112 LYECQSCGQQYLRKRR-------------------I-NTKRYRCGKCRGKLKL 144 (149)
T ss_pred EEECCCCCCEeeeeee-------------------c-CCCcEEeCCCCcEeee
Confidence 4789889876643221 1 2356999999876643
No 374
>PRK12722 transcriptional activator FlhC; Provisional
Probab=23.35 E-value=43 Score=30.46 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhc-chhhhhcccCCCCCCCCceeee
Q 037502 369 QAELDKAQALKEHAIKQINSTILRVT-CHACKQQFQSRLPPDENSLVLS 416 (426)
Q Consensus 369 ~~e~~~a~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 416 (426)
..-+.+||.| ++.+++-+|+++ |-.|+.+|-..+.+.-.+.+|+
T Consensus 114 ~Ls~tRAw~L----vRf~~s~~L~l~~C~~Cgg~fv~~~~e~~~~f~Cp 158 (187)
T PRK12722 114 LLSLTRAWTL----VRFVDSGMLQLSSCNCCGGHFVTHAHDPVGSFVCG 158 (187)
T ss_pred eecHHHHHHH----HHHHhcCcEeeccCCCCCCCeeccccccCCCCcCC
Confidence 4678888876 566777788865 9999999986554333445544
No 375
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.27 E-value=47 Score=28.28 Aligned_cols=16 Identities=31% Similarity=0.856 Sum_probs=12.9
Q ss_pred CCccccccCCcccCCc
Q 037502 54 SDRYVCEICNQGFQRD 69 (426)
Q Consensus 54 ~~py~C~~Cgk~F~~~ 69 (426)
...|+|..|++.|...
T Consensus 51 ~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 51 HQRYKCKSCGSTFTVE 66 (129)
T ss_pred ccccccCCcCcceeee
Confidence 3469999999999754
No 376
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.26 E-value=4.6e+02 Score=22.10 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
..+.+++.|..++..++.-|+.-+..|++....=+.-++++
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666555555555444444333333
No 377
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=23.25 E-value=3.3e+02 Score=24.11 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQEF 358 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~ 358 (426)
++..+++|.+|.+.-|+.+
T Consensus 129 ~~~~~~~a~ke~~~kEe~l 147 (158)
T PF02731_consen 129 AEMQKELAEKEKEEKEEKL 147 (158)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555544
No 378
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.96 E-value=5.5e+02 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 354 AEQEFANAKRIRQQAQAELDKAQALKEHA 382 (426)
Q Consensus 354 Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a 382 (426)
.+.|.++.|...+.++.|++ .||+|+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~---~LkkQ~ 184 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIE---ALKKQS 184 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34444445544444444443 444444
No 379
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.75 E-value=4.3e+02 Score=28.25 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 345 QAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 345 ~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
..+..++-..+.|+.++|..|+.++.++.-+..-....+..++
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~ 151 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLS 151 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhh
Confidence 3555556667777888888888776666665544443444433
No 380
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=22.72 E-value=4.2e+02 Score=24.66 Aligned_cols=22 Identities=27% Similarity=0.145 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037502 348 KRQIELAEQEFANAKRIRQQAQ 369 (426)
Q Consensus 348 krq~e~Ae~e~~~Akr~~e~a~ 369 (426)
+.=+..|-+||.+|+.+.++..
T Consensus 39 ~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 39 KDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666655554
No 381
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=22.72 E-value=89 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=15.8
Q ss_pred hhhhhhcchhhhhcccCCC
Q 037502 388 STILRVTCHACKQQFQSRL 406 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~ 406 (426)
.+.++|.|-.|.+.+.+..
T Consensus 80 D~~~~~~Cv~Cg~~i~~~~ 98 (236)
T PF12269_consen 80 DDDLSIYCVTCGHEIPSKK 98 (236)
T ss_pred ccceeeeeeeCCCcCCHHH
Confidence 4678999999999887655
No 382
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.65 E-value=6e+02 Score=23.25 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037502 341 EEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQI 386 (426)
Q Consensus 341 e~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~ 386 (426)
+...+..+.+++.++....+++..+...+.++...+.-++..+-+.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555666666666666666666666666666555544443
No 383
>PF15269 zf-C2H2_7: Zinc-finger
Probab=22.60 E-value=50 Score=22.58 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.0
Q ss_pred cccccCCcccCCchhHHHHhhhc
Q 037502 57 YVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 57 y~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
|+|-.|.-+...++.|-.||+--
T Consensus 21 ykcfqcpftc~~kshl~nhmky~ 43 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKYS 43 (54)
T ss_pred ceeecCCcccchHHHHHHHHHHH
Confidence 78889988888888898888743
No 384
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=22.57 E-value=4.1e+02 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037502 357 EFANAKRIRQQAQAELDKAQAL 378 (426)
Q Consensus 357 e~~~Akr~~e~a~~e~~~a~~~ 378 (426)
.|++|+...++|+.+|.+|+.+
T Consensus 30 ~fe~A~~~l~ea~~~l~~AH~~ 51 (97)
T cd00215 30 DFAEAEELLEEANDSLNEAHHA 51 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 385
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=22.47 E-value=1.3e+02 Score=25.65 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 037502 358 FANAKRIRQQAQAELD 373 (426)
Q Consensus 358 ~~~Akr~~e~a~~e~~ 373 (426)
+.+|+...++|.+.+.
T Consensus 112 ~~~a~~~l~ra~arl~ 127 (134)
T CHL00063 112 KIEANLALKRARARVE 127 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 386
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=22.46 E-value=3e+02 Score=21.54 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 322 LKEQAREQLRLAMAEKACAEEARQAAKRQIELAEQEFANAK 362 (426)
Q Consensus 322 ~~~~a~~~~~~a~~~~~~ae~ar~~Akrq~e~Ae~e~~~Ak 362 (426)
...+|.|++..+++..-|-+.++-.|+-.+|-|-.++....
T Consensus 17 ~i~~a~eQ~~~~~rqehynd~eYt~Aq~~LE~a~neL~~l~ 57 (84)
T PF10732_consen 17 AIRFAQEQFEEGSRQEHYNDEEYTEAQQMLEEAYNELEKLA 57 (84)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999988887543
No 387
>PTZ00491 major vault protein; Provisional
Probab=22.43 E-value=5.5e+02 Score=28.99 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 037502 368 AQAELDKAQAL 378 (426)
Q Consensus 368 a~~e~~~a~~~ 378 (426)
++.|+++|+.|
T Consensus 772 ~~le~~k~~~l 782 (850)
T PTZ00491 772 NELEIAKAKEL 782 (850)
T ss_pred hHHHHHHHHHH
Confidence 33444444443
No 388
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.39 E-value=52 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=13.5
Q ss_pred CCccccccCCcccCCchh
Q 037502 54 SDRYVCEICNQGFQRDQN 71 (426)
Q Consensus 54 ~~py~C~~Cgk~F~~~~~ 71 (426)
.+-|.|+.||..+....+
T Consensus 44 ~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 44 GRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred cceEEcCCCCCEECcHHH
Confidence 356999999998766543
No 389
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=22.25 E-value=4.5e+02 Score=25.90 Aligned_cols=9 Identities=11% Similarity=0.157 Sum_probs=3.7
Q ss_pred ccccccccc
Q 037502 284 TQLQLSIGS 292 (426)
Q Consensus 284 ~~l~ls~~~ 292 (426)
..+.+.+++
T Consensus 217 l~~~~~lp~ 225 (321)
T PF07946_consen 217 LIFSFRLPS 225 (321)
T ss_pred EEEEEEeCC
Confidence 334444443
No 390
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.22 E-value=7.5e+02 Score=24.36 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKE 380 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~ 380 (426)
+.+.+++.-+.+.+..+.+++..+.++..|+++++
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666666666666655
No 391
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.09 E-value=64 Score=35.49 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=9.6
Q ss_pred hhCCCCccccccCCCc
Q 037502 127 KHSNHKQWVCEKCSKG 142 (426)
Q Consensus 127 ~H~~~k~~~C~~C~k~ 142 (426)
.|...+...|.+||..
T Consensus 402 ~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 402 LHRFQRRLRCHHCGYQ 417 (679)
T ss_pred EECCCCeEECCCCcCC
Confidence 3444555677777754
No 392
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=22.07 E-value=3.4e+02 Score=22.27 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 339 CAEEARQAAKRQIELAE-QEFANAKRIRQQAQAELDKAQALK 379 (426)
Q Consensus 339 ~ae~ar~~Akrq~e~Ae-~e~~~Akr~~e~a~~e~~~a~~~~ 379 (426)
++-+||-.+..-+.+|+ -+|++|....++|...+..|+.+-
T Consensus 15 ~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~eAH~~Q 56 (105)
T COG1447 15 HAGNARSKAYEALKAAKEGDFEEAEELIQEANDALNEAHHVQ 56 (105)
T ss_pred HcccHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333333 245555555555555555555543
No 393
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=21.94 E-value=52 Score=28.11 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.4
Q ss_pred CccccccCCcccCCchhHHHHhhhcc
Q 037502 55 DRYVCEICNQGFQRDQNLQMHRRRHK 80 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H~r~H~ 80 (426)
+-..|-+|||.|. +|++|+.+|.
T Consensus 75 D~IicLEDGkkfK---SLKRHL~t~~ 97 (148)
T COG4957 75 DYIICLEDGKKFK---SLKRHLTTHY 97 (148)
T ss_pred CeEEEeccCcchH---HHHHHHhccc
Confidence 3467999999994 6999999985
No 394
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.90 E-value=5.8e+02 Score=27.31 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 344 RQAAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAI 383 (426)
Q Consensus 344 r~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~ 383 (426)
...++|-+.+=|.|....|++..+.+.+|.+++...++.+
T Consensus 157 ~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3478888888899999999999999999999988777665
No 395
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.83 E-value=6.4e+02 Score=27.98 Aligned_cols=21 Identities=48% Similarity=0.450 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 335 AEKACAEEARQAAKRQIELAE 355 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~Ae 355 (426)
.|++++||.+..+.-|.++++
T Consensus 493 LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566655554444443333
No 396
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=21.62 E-value=1.3e+02 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 037502 345 QAAKRQIELAEQEFANAKR--IRQQAQAELDKAQA 377 (426)
Q Consensus 345 ~~Akrq~e~Ae~e~~~Akr--~~e~a~~e~~~a~~ 377 (426)
+.|++.++.|+..+ +... .+++|+.+|++|..
T Consensus 92 ~~a~~~~~~A~~~l-~~~~~~~~~~a~~~l~ra~~ 125 (132)
T PRK13450 92 KRAENAKKRAEERL-RKKDEIDVKRAELALFRAIA 125 (132)
T ss_pred HHHHHHHHHHHHHH-hcCChhHHHHHHHHHHHHHH
No 397
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.29 E-value=1.9e+02 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 342 EARQAAKRQIELAEQEFANAKRIRQQAQ 369 (426)
Q Consensus 342 ~ar~~Akrq~e~Ae~e~~~Akr~~e~a~ 369 (426)
..+++++..+..|+.-+++|+-..+.++
T Consensus 53 kLYkeG~~lL~eAqk~LE~AkLe~~eI~ 80 (86)
T PRK14065 53 DLYKTAMQELFLAQKLLENAYLEYEKLQ 80 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777788888888887777776654
No 398
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=21.15 E-value=76 Score=27.48 Aligned_cols=21 Identities=10% Similarity=0.305 Sum_probs=16.2
Q ss_pred CccccccCCcccCCchhHHHH
Q 037502 55 DRYVCEICNQGFQRDQNLQMH 75 (426)
Q Consensus 55 ~py~C~~Cgk~F~~~~~L~~H 75 (426)
.-|.|+.||+.|..=++++.-
T Consensus 123 ~f~~C~~C~kiyW~GsH~~~~ 143 (147)
T PF01927_consen 123 EFWRCPGCGKIYWEGSHWRRM 143 (147)
T ss_pred eEEECCCCCCEecccccHHHH
Confidence 368999999999876666543
No 399
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.06 E-value=5.7e+02 Score=27.48 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 321 RLKEQAREQLRLAMAE-------KACAEEARQAAKRQIELAEQEFANAKRIRQQAQAELDKAQA 377 (426)
Q Consensus 321 ~~~~~a~~~~~~a~~~-------~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~ 377 (426)
+-++--..+|..-... ++.-...-|+.|+.|..++.|+...|-.+|+||..++.+..
T Consensus 86 RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
No 400
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.04 E-value=7.6e+02 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 037502 335 AEKACAEEARQAAKRQIELA---------EQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 335 ~~~~~ae~ar~~Akrq~e~A---------e~e~~~Akr~~e~a~~e~~~ 374 (426)
++.++.|.--++++.+-.|- +.+|-+|++.++|-+.=++.
T Consensus 87 RetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieT 135 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIET 135 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777776664 44555566655555554443
No 401
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.99 E-value=4.4e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 346 AAKRQIELAEQEFANAKRIRQQAQAELDK 374 (426)
Q Consensus 346 ~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~ 374 (426)
.++.+++..+.+.+.+++.++.++.|++.
T Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 59 (378)
T TIGR01554 31 AAALEKEELETDVEKLKEEIKLLEDAIAD 59 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666555554433
No 402
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=20.92 E-value=26 Score=23.38 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=10.6
Q ss_pred CccccccCCcccCC
Q 037502 55 DRYVCEICNQGFQR 68 (426)
Q Consensus 55 ~py~C~~Cgk~F~~ 68 (426)
.-+.|+.||..|-+
T Consensus 31 p~~~C~~CGE~~~~ 44 (46)
T TIGR03831 31 PALVCPQCGEEYLD 44 (46)
T ss_pred CccccccCCCEeeC
Confidence 44789999987643
No 403
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=20.92 E-value=6.1e+02 Score=22.67 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037502 353 LAEQEFANAKRIRQQAQAELDKAQALKEHAIKQ 385 (426)
Q Consensus 353 ~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~ 385 (426)
+++++.+....+.+.+.....+.+.+.+.+...
T Consensus 96 l~~e~e~~~~~~l~~~~~~~~~~~~~~~~~e~~ 128 (170)
T PF14943_consen 96 LAKEREEREEEILERLERKEEEEEERKERKEEE 128 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444333
No 404
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=20.85 E-value=1.1e+02 Score=30.42 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=39.9
Q ss_pred Ccccccccc------cccCcCCCCCCCCCCCcch------hccC----ccccCCCCccccccCCcccCCchhHHHHhhhc
Q 037502 16 PFSCLENGI------SHNKRKRRPAGTPDPDAEV------VSLS----PKTLLESDRYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 16 py~C~~Cg~------~f~~~~~l~~H~~~~~~~~------l~~h----~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
-|+|..|.. .|.....-..|.-+|--.. +.++ ...|-....|.|+.|++.--+...|..|...-
T Consensus 23 rYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPyC~~~Gfte~~f~~Hv~s~ 102 (381)
T KOG1280|consen 23 RYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPYCGIMGFTERQFGTHVLSQ 102 (381)
T ss_pred eeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccccccccCCcccccccchhHHHHHhhhc
Confidence 588866653 4555555556665552211 1111 12334445799999998877889999998644
Q ss_pred c
Q 037502 80 K 80 (426)
Q Consensus 80 ~ 80 (426)
|
T Consensus 103 H 103 (381)
T KOG1280|consen 103 H 103 (381)
T ss_pred C
Confidence 3
No 405
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=20.78 E-value=76 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=23.3
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhC
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHS 129 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~ 129 (426)
..+..|.|+.|+ |.|.-..-+.+||...|.
T Consensus 73 ~~~~K~~C~lc~-------KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 73 EDEDKWRCPLCG-------KLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSSEEEEE-SSS--------EESSHHHHHHHHHHH-H
T ss_pred HcCCEECCCCCC-------cccCChHHHHHHHhhcCH
Confidence 356679999998 999999999999988885
No 406
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=20.73 E-value=92 Score=29.55 Aligned_cols=59 Identities=27% Similarity=0.488 Sum_probs=37.0
Q ss_pred ccCcceeCCCCCCCCCCcccccCCHHHHHHHHHhhhCCCCccccccCCCcccChhhHHHHHHHcCCCCeec-cCCcccCC
Q 037502 93 VRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSC-DCGRVFSR 171 (426)
Q Consensus 93 ~~~k~~~C~~C~c~~~~~~~~f~~~~~l~~H~~r~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~kp~~C-~Cgk~F~~ 171 (426)
..++.|.|..|. ... .+++-.....-.|..|.+.|--... -+..|..-|.| .|+..|.-
T Consensus 108 ~~drqFaC~~Cd-------~~W---------wRrvp~rKeVSRCr~C~~rYDPVP~----dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 108 SVDRQFACSSCD-------HMW---------WRRVPQRKEVSRCRKCRKRYDPVPC----DKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred ccceeeeccccc-------hHH---------HhccCcccccccccccccccCCCcc----ccccceeeeecccccccchh
Confidence 446889999987 221 1333334455678889888764321 01146677999 59999963
No 407
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=20.73 E-value=6.6e+02 Score=24.68 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 336 EKACAEEARQAAKRQIELAEQEFANAKRIRQQ 367 (426)
Q Consensus 336 ~~~~ae~ar~~Akrq~e~Ae~e~~~Akr~~e~ 367 (426)
....||+.++++.+-..++|..+++.|..+..
T Consensus 223 RqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~ 254 (302)
T PF07139_consen 223 RQKKAEELKRLTDRASQMSEEQLAELRADIKH 254 (302)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 34445566666666666666666655544443
No 408
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=20.73 E-value=6.5e+02 Score=22.97 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 037502 323 KEQAREQLRLAMA 335 (426)
Q Consensus 323 ~~~a~~~~~~a~~ 335 (426)
..|+....+||-.
T Consensus 91 ~~F~~Qt~~LA~~ 103 (192)
T PF11180_consen 91 RDFAQQTARLADV 103 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555533
No 409
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=20.70 E-value=8e+02 Score=27.19 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 037502 356 QEFANAKRIRQQAQAELDKAQALKEHAIKQIN 387 (426)
Q Consensus 356 ~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~ 387 (426)
.|.+.+=|.||.|-+|++.+-.-+|.+.++..
T Consensus 554 AE~E~aLRLREeA~aER~~~~~~aEaaa~Rla 585 (828)
T PF04094_consen 554 AEEESALRLREEALAERDRALNRAEAAAQRLA 585 (828)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788999999999988888887777654
No 410
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=2.9e+02 Score=28.26 Aligned_cols=55 Identities=27% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q 037502 330 LRLAMAEKACAEEARQ----AAKRQIELAEQEFANAKRIRQQAQAELDKAQALKEHAIKQINSTILR 392 (426)
Q Consensus 330 ~~~a~~~~~~ae~ar~----~Akrq~e~Ae~e~~~Akr~~e~a~~e~~~a~~~~~~a~~~~~~~~~~ 392 (426)
+++....++.++..|+ .++.+.+.+++|++ .+...++++++||+++..-+..-+.
T Consensus 358 ~~lS~~~k~kt~~~RQ~~~e~~~K~th~~rqEaa--------Q~kk~Ek~Ka~kekl~a~~d~Ek~r 416 (440)
T KOG2357|consen 358 LFLSKDAKAKTDKNRQRVEEEFLKLTHAARQEAA--------QEKKAEKKKAEKEKLKASGDPEKQR 416 (440)
T ss_pred hhchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhcCCHHHHH
No 411
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.54 E-value=67 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.793 Sum_probs=11.2
Q ss_pred ccccCCcccCCchhH
Q 037502 58 VCEICNQGFQRDQNL 72 (426)
Q Consensus 58 ~C~~Cgk~F~~~~~L 72 (426)
.|.+||+.|.-.-..
T Consensus 10 ~C~~C~rpf~WRKKW 24 (42)
T PF10013_consen 10 ICPVCGRPFTWRKKW 24 (42)
T ss_pred cCcccCCcchHHHHH
Confidence 499999999755444
No 412
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=20.37 E-value=4.1e+02 Score=23.50 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=22.5
Q ss_pred CCcchhccCccccCCCCccccccCCcccCCchhHHHHhhhc
Q 037502 39 PDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRH 79 (426)
Q Consensus 39 ~~~~~l~~h~~~h~~~~py~C~~Cgk~F~~~~~L~~H~r~H 79 (426)
++..+|.+-.--..|-+||.| +-.|....-|.+-.+.+
T Consensus 12 PHNAVLLlCSS~~kgcRpymc---~Ts~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 12 PHNAVLLLCSSHEKGCRPYMC---DTSYRHSNCLDQFKKAY 49 (162)
T ss_pred CCceEEEEeccccCCcccccc---CCccchhHHHHHHHHHh
Confidence 334456665555677889976 45565555555555555
No 413
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=20.29 E-value=7.7e+02 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhchhhhhhcchhhhhcc
Q 037502 374 KAQALKEHAIKQINSTILRVTCHACKQQF 402 (426)
Q Consensus 374 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (426)
.+...++..+..+...|+.+.+.-+++-.
T Consensus 152 ~l~~~~~~~l~~~e~elv~Lal~iaekvi 180 (281)
T PRK06669 152 KLIKKREEILESSEEEIVELALDIAKKVI 180 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555555444
No 414
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.14 E-value=3.3e+02 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037502 349 RQIELAEQEFANAKRIRQQAQAELD 373 (426)
Q Consensus 349 rq~e~Ae~e~~~Akr~~e~a~~e~~ 373 (426)
.+.+..++.++..|..++++..|++
T Consensus 163 ~~le~k~e~l~k~~~dr~~~~~ev~ 187 (243)
T cd07666 163 AELDSKVEALANKKADRDLLKEEIE 187 (243)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3333333333333333333333333
No 415
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.08 E-value=1.3e+02 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037502 340 AEEARQAAKRQIELAEQEFAN 360 (426)
Q Consensus 340 ae~ar~~Akrq~e~Ae~e~~~ 360 (426)
-++|.++.+.||+.|.+++.+
T Consensus 66 cpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777776653
Done!