BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037504
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA+ ++ V+ L+K D+ + G T L AAA+G +E+V+ ++
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKN----GADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D D P+ AA GH E+VE L +
Sbjct: 103 GADVNAY---DNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 47/164 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
L AA +G + V+ M D+ D D P+ AAS GH E+VE L + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAT---DNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL 218
D L + T LH+ A LE+
Sbjct: 75 ASD-----LTGI-------TPLHLAAATG---------------------------HLEI 95
Query: 219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFE 262
VE+ L K+ + +D +GHT H+A EI + + +
Sbjct: 96 VEV-----LLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 24 RLKLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKA 83
R L+ A NG K++ + D + + G T LH+AA ++ VK L++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 84 ENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGH 143
D+ +++ G T L AA +G +E+VK +E D+ DK+ P+ AA GH
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH 113
Query: 144 TEVVEFL 150
EVV+ L
Sbjct: 114 LEVVKLL 120
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA ++ VK L++ D+ +++ G T L AA +G +E+VK +E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
D+ DK+ P+ AA GH EVV+ L
Sbjct: 58 GADVN---AKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
LE+V+LL E D+ K D+NG T H+A N E+ K + E AD+ ++KD
Sbjct: 15 LEVVKLLLE----AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKD 65
Query: 276 KDGNNILHLAGK 287
K+G LHLA +
Sbjct: 66 KNGRTPLHLAAR 77
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
LE+V+LL E D+ K D+NG T H+A N E+ K + E AD+ ++KD
Sbjct: 48 LEVVKLLLE----AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKD 98
Query: 276 KDGNNILHLAGK 287
K+G LHLA +
Sbjct: 99 KNGRTPLHLAAR 110
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 240 NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK 287
NG T H+A N E+ K + E AD+ ++KDK+G LHLA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA ++ VK L++ D+ +++ G T L AA +G +E+VK +E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
D+ DK+ P+ AA GH EVV+ L
Sbjct: 58 GADVN---AKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
LE+V+LL E D+ K D+NG T H+A N E+ K + E AD+ ++KD
Sbjct: 15 LEVVKLLLE----AGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKD 65
Query: 276 KDGNNILHLAGK 287
K+G LHLA +
Sbjct: 66 KNGRTPLHLAAR 77
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 240 NGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK 287
NG T H+A N E+ K + E AD+ ++KDK+G LHLA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADV--NAKDKNGRTPLHLAAR 44
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA ++ V+ L+K D+ +++ G T L AA G +E+V+ ++
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKA----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ DKD P+ AA GH E+VE L +
Sbjct: 91 GADVNA---KDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AA A + D V+ L+ A D+ +++ G T L AA G +E+V+ ++ D+
Sbjct: 9 AARAGQDDEVRILM----ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA- 63
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLA 184
DKD P+ AA GH E+VE L + + V + D Y T LH+ A
Sbjct: 64 --KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-----------VNAKDKDGY-TPLHLAA 109
Query: 185 RKN 187
R+
Sbjct: 110 REG 112
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 47/167 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
L AA +G + V+ M D+ DKD P+ AA GH E+VE L + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 60
Query: 159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL 218
V + D Y T LH+ AR E LE+
Sbjct: 61 ---------VNAKDKDGY-TPLHLAAR---------------------------EGHLEI 83
Query: 219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS 265
VE+ L K + D++G+T H+A EI + + + +
Sbjct: 84 VEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGKLPPLNRLNIV 297
D++G+T H+A EI + + + AD+ ++KDKDG LHLA + L + ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAG--ADV--NAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 298 SVAALQLQ--------------RELLWFQEVKKVVPRKFAEEKNND--GLTPGDLFIKE- 340
A + RE E+ +V+ + A+ D G TP DL I+E
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAARE--GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Query: 341 HEEL 344
HE++
Sbjct: 146 HEDI 149
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
+L A NG+ R K + + D + G T LH AA + VK L+ K
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHYAAKEGHKEIVKLLISK----G 60
Query: 86 LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
D+ ++ G T L YAA G E+VK + D+ D D P+ AA GH E
Sbjct: 61 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA---KDSDGRTPLHYAAKEGHKE 117
Query: 146 VVEFL 150
+V+ L
Sbjct: 118 IVKLL 122
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH AA + VK L+ K D+ ++ G T L YAA G E+VK +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISK----GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
D+ D D P+ A G+ E+V+ L ++
Sbjct: 126 GADVNTS---DSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK 287
D +G T H A +EI K + IS AD+ ++KD DG LH A K
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLL--ISKGADV--NAKDSDGRTPLHYAAK 79
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA + ++ V+ L+K D+ + G T L AA G +E+V+ ++
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLK----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ + D D M P+ AA G+ E+VE L +
Sbjct: 103 GADVNAM---DSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
+G T LH+AA ++ V+ L+K N D + +G T L AA G +E+V+ +
Sbjct: 45 HVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD----DSLGVTPLHLAADRGHLEVVEVLL 100
Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
+ D+ +D + P+ AA++GH E+VE L +
Sbjct: 101 KNGADVN---ANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
L AA +G + V+ M D+ D P+ AA GH E+VE L + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN---ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL 218
DD + L + + VL KN N N F +L A N LE+
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVL-LKNGADVNANDHNGFTP-LHLAA----NIGHLEI 128
Query: 219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEIS 264
VE+ L K+ + D+ G T F I++ N ++ + + +++
Sbjct: 129 VEV-----LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
+L A NG+ R K + + D + G T LH AA + VK L+ K
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADP--NASDSDGRTPLHYAAENGHKEIVKLLLSK----G 60
Query: 86 LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
D ++ G T L YAA +G E+VK + D D D P+ AA GH E
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAENGHKE 117
Query: 146 VVEFL 150
+V+ L
Sbjct: 118 IVKLL 122
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH AA + VK L+ K D ++ G T L YAA +G E+VK +
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSK----GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
D D D P+ A G+ E+V+ L ++
Sbjct: 126 GADPNTS---DSDGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 217 ELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDK 276
E+V+LL L K D K D +G T H A N +EI K + +S AD ++KD
Sbjct: 51 EIVKLL----LSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLL--LSKGAD--PNAKDS 101
Query: 277 DGNNILHLA 285
DG LH A
Sbjct: 102 DGRTPLHYA 110
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLA 285
D +G T H A N +EI K + +S AD ++KD DG LH A
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLL--LSKGAD--PNAKDSDGRTPLHYA 77
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
+L A NG+ R K + + D + G T LH AA + VK L+ K
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV--NASDSDGRTPLHHAAENGHKEVVKLLISK----G 60
Query: 86 LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
D+ ++ G T L +AA +G E+VK + D+ D D P+ AA GH E
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA---KDSDGRTPLHHAAENGHKE 117
Query: 146 VVEFL 150
VV+ L
Sbjct: 118 VVKLL 122
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 54 ITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKA 113
++ LG + A N+ D VK L++ D+ + G T L +AA +G E+VK
Sbjct: 1 MSELGKRLIEAAENGNK-DRVKDLIEN----GADVNASDSDGRTPLHHAAENGHKEVVKL 55
Query: 114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
+ D+ D D P+ AA GH EVV+ L
Sbjct: 56 LISKGADVNA---KDSDGRTPLHHAAENGHKEVVKLL 89
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 74/188 (39%), Gaps = 53/188 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN-S 157
L AA +G+ + VK +E D+ D D P+ AA GH EVV+ L + + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNAS---DSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 158 LKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALE 217
KD D T LH A EN E
Sbjct: 65 AKDSDG-------------RTPLH--------------------------HAAENGHK-E 84
Query: 218 LVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
+V+LL + K D+ K D +G T H A N +E+ K + IS AD+ ++ D D
Sbjct: 85 VVKLL----ISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLL--ISKGADV--NTSDSD 135
Query: 278 GNNILHLA 285
G L LA
Sbjct: 136 GRTPLDLA 143
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
GDT LH+AA ++ V+ L+K D+ + G T L AA G +E+V+ ++
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKN----GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ DD P+ AA GH E+VE L +
Sbjct: 103 GADVN---ADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ + D P+
Sbjct: 30 VRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL---DFSGSTPLHL 86
Query: 138 AASLGHTEVVEFLYRETKNSLKDD 161
AA GH E+VE L + + DD
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADD 110
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
LG T LH+AA ++ V+ L+K D+ + G T L AA +G +E+V+ ++
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKY----GADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D + P+ AA GH E+VE L +
Sbjct: 102 HGADVN---AKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 216 LELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKD 275
LE+VE+L KY + +D G T H+A N EI + + + AD+ ++KD
Sbjct: 60 LEIVEVL-----LKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG--ADV--NAKD 110
Query: 276 KDGNNILHLA 285
+G LHLA
Sbjct: 111 YEGFTPLHLA 120
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKAT 114
++ G+T LH AA + VKKL+ K D+ R++ G T L AA +G E+VK
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 115 MEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
+ D+ KD P A GH E+V+ L
Sbjct: 62 LAKGADVNARS---KDGNTPEHLAKKNGHHEIVKLL 94
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 209 AVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVAD 268
A +N A E+ +LL K D+ + ++G+T H+A N EI K + ++ AD
Sbjct: 16 AAKNGHAEEVKKLL-----SKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLL--LAKGAD 67
Query: 269 LLFDSKDKDGNNILHLAGK 287
+ +++ KDGN HLA K
Sbjct: 68 V--NARSKDGNTPEHLAKK 84
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
T LH+AA ++ V+ L+K D+ ++ +G T L AA G +E+V+ ++
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKN----GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D P+ AA GH E+VE L +
Sbjct: 105 DVN---ASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D + G T L AAA G +E+V+ + D+ V D + P+
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV---DTNGTTPLHL 74
Query: 138 AASLGHTEVVEFLYR 152
AASLGH E+VE L +
Sbjct: 75 AASLGHLEIVEVLLK 89
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AAA ++ V+ L++ D+ + G T L AA+ G +E+V+ ++
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRN----GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D + P+ AA GH E+VE L +
Sbjct: 91 GADVN---AKDATGITPLYLAAYWGHLEIVEVLLK 122
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
+G T LH+AA ++ V+ L+K D+ + +G T L AA G +E+V+ ++
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLKN----GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK 101
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D + + P+ AA+ GH E+VE L +
Sbjct: 102 NGADVN---AKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 53/201 (26%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AA A R D V+ L+ A D+ + +G T L AA G +E+V+ ++ D+
Sbjct: 21 AARAGRDDEVRILM----ANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYRETKN-SLKDDDCIELLVKLIETDSYETALHVL 183
D P+ AA GH E+VE L + + + KDD+ I T LH+
Sbjct: 77 ---DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI-------------TPLHLA 120
Query: 184 ARKNLTSSNQNPRGIFQRYFNLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHT 243
A N LE+VE+ L KY + D+ G T
Sbjct: 121 A---------------------------NRGHLEIVEV-----LLKYGADVNAQDKFGKT 148
Query: 244 IFHIAVSNRMREIFKFIFEIS 264
F I+++N ++ + + +++
Sbjct: 149 AFDISINNGNEDLAEILQKLN 169
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
LG T LH+AA ++ V+ L+K D+ ++ G T L AA G +E+V+ ++
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKN----GADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 117 GNEDIT 122
D+
Sbjct: 135 YGADVN 140
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA + V+ L+K D+ R+ G T L AA +G +E+V+ ++
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLK----HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D + P+ AA GH E+VE L +
Sbjct: 103 GADVNA---QDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AA A + D V+ L+ A D+ + G T L AA G E+V+ ++ D+
Sbjct: 21 AARAGQDDEVRILM----ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D D P+ AA GH E+VE L +
Sbjct: 77 ---DTDGWTPLHLAADNGHLEIVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
D TR+G T LHVA+ I VK L++ D+ + ++G + L AA G ++V
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
++ V D P+ A LG+ V + L
Sbjct: 361 TLLLKNGASPNEV---SSDGTTPLAIAKRLGYISVTDVL 396
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA N+++ + L++ + N + + G T L AA G E+V +
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ----GVTPLHLAAQEGHAEMVALLLSK 267
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
+ + +K + P+ A GH V + L +
Sbjct: 268 QANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKH 300
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 26 KLYRVALNGDWARAKVIYDEHKDEIGDVITRLGDTALHVAAAANRIDFVKKLVKKMKAEN 85
+L A NG+ R K + + D + G T LH+AA + VK L+ ++
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADV--NASDSDGKTPLHLAAENGHKEVVKLLL----SQG 60
Query: 86 LDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTE 145
D ++ G T L AA +G E+VK + D D D P+ AA GH E
Sbjct: 61 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKE 117
Query: 146 VVEFLYRE 153
VV+ L +
Sbjct: 118 VVKLLLSQ 125
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 75/188 (39%), Gaps = 53/188 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN-S 157
L AA +G+ + VK +E D+ D D P+ AA GH EVV+ L + + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNAS---DSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 158 LKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALE 217
KD D +T LH+ A EN E
Sbjct: 65 AKDSDG-------------KTPLHL--------------------------AAENGHK-E 84
Query: 218 LVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKD 277
+V+LL L + D K D +G T H+A N +E+ K + +S AD ++ D D
Sbjct: 85 VVKLL----LSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLL--LSQGAD--PNTSDSD 135
Query: 278 GNNILHLA 285
G L LA
Sbjct: 136 GRTPLDLA 143
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 54 ITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKA 113
++ LG + A N+ D VK L++ D+ + G T L AA +G E+VK
Sbjct: 1 MSELGKRLIEAAENGNK-DRVKDLLEN----GADVNASDSDGKTPLHLAAENGHKEVVKL 55
Query: 114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN-SLKDDD 162
+ D D D P+ AA GH EVV+ L + + + KD D
Sbjct: 56 LLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 102
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G TAL V N + ++L+ ++ N DL ++R G + AA +G ++ ++ +E
Sbjct: 37 FGRTALQVMKLGN-PEIARRLL--LRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
D+ + +D + LP+ AA GH VVEFL + T +++
Sbjct: 92 NQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G TAL V N + ++L+ ++ N DL ++R G + AA +G ++ ++ +E
Sbjct: 37 FGRTALQVMKLGN-PEIARRLL--LRGANPDL--KDRTGFAVIHDAARAGQLDTLQTLLE 91
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
D+ + +D + LP+ AA GH VVEFL + T +++
Sbjct: 92 FQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AA A R D V+ L+ A D+ + G T L AA +G +E+V+ ++ D+ V
Sbjct: 21 AARAGRDDEVRILM----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D M P+ AA GH E+VE L +
Sbjct: 77 ---DHAGMTPLRLAALFGHLEIVEVLLK 101
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNE 119
T LH+AA ++ V+ L+K D+ + G T L AA G +E+V+ ++
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKN----GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ +D + P+ AA GH E+VE L +
Sbjct: 105 DVN---ANDMEGHTPLHLAAMFGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA ++ V+ L+K D+ + +G T L AA G +E+V+ ++
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLK----HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
D+ V D P+ AA +GH E+VE L +
Sbjct: 103 GADVNAV---DTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ + D P+
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIMGSTPLHL 86
Query: 138 AASLGHTEVVEFLYRE 153
AA +GH E+VE L +
Sbjct: 87 AALIGHLEIVEVLLKH 102
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
+ I +G T LH+AA ++ V+ L+K D+ + G T L AA G +E+V
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLK----HGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 112 KATMEGNEDI 121
+ ++ D+
Sbjct: 130 EVLLKHGADV 139
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G TAL V N + ++L+ ++ N DL ++R G + AA +G ++ ++ +E
Sbjct: 37 FGRTALQVMKLGN-PEIARRLL--LRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
D+ + +D + LP+ AA GH VVEFL + T +++
Sbjct: 92 FQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G TAL V N + ++L+ ++ N DL ++R G + AA +G ++ ++ +E
Sbjct: 37 FGRTALQVMKLGN-PEIARRLL--LRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
D+ + +D + LP+ AA GH VVEFL + T +++
Sbjct: 92 FQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
+ + G T LH+AA + ++ V+ L+K D+ + G T L AA +G +E+V
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLK----HGADVDAADVYGFTPLHLAAMTGHLEIV 96
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
+ ++ D+ D P+ AA GH E+VE L +
Sbjct: 97 EVLLKYGADVNAF---DMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AA A + D V+ L+ A D+ + G T L AA SG +E+V+ ++ D+
Sbjct: 21 AARAGQDDEVRILI----ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D P+ AA GH E+VE L +
Sbjct: 77 ---DVYGFTPLHLAAMTGHLEIVEVLLK 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
+V ++ G + LHVAA R D + L+K + RN L A G ++V
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAVPLHLACQQGHFQVV 135
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
K ++ N + D P++ A S GH E+V L +
Sbjct: 136 KCLLDSNAKPN---KKDLSGNTPLIYACSGGHHELVALLLQ 173
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 57 LGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G TAL V N + ++L+ ++ N DL ++R G + AA +G ++ ++ +E
Sbjct: 37 FGRTALQVMKLGN-PEIARRLL--LRGANPDL--KDRTGNAVIHDAARAGFLDTLQTLLE 91
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
D+ + +D + LP+ AA GH VVEFL + T +++
Sbjct: 92 FQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 65 AAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMV 124
AAAA + D V+ L+ A D+ + G T L AAA+G +E+V+ ++ D+
Sbjct: 13 AAAAGQDDEVRILM----ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA- 67
Query: 125 PQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D + P+ AA GH E+VE L +
Sbjct: 68 --SDSAGITPLHLAAYDGHLEIVEVLLK 93
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AAA +++ V+ L+K D+ + G T L AA G +E+V+ ++
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKN----GADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D+ D+ P+ AA G E+VE L +
Sbjct: 95 GADVNAY---DRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH+AA ++ V+ L+K D+ + G T L AA G +E+V+ ++
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLK----HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRE 153
D+ V D P+ AA +GH E+VE L +
Sbjct: 103 GADVNAV---DTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ + D P+
Sbjct: 30 VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---DIXGSTPLHL 86
Query: 138 AASLGHTEVVEFLYRE 153
AA +GH E+VE L +
Sbjct: 87 AALIGHLEIVEVLLKH 102
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 21 RTRRLKLYRVALNGDWARAKVIYDEHKDEI-GDV--ITRLGDTALHVAA---AANRIDFV 74
++ R L++ A N D+ +Y + ++ GD+ + R G TAL + A +++
Sbjct: 197 KSERSALHQAAANRDFG--XXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASA 254
Query: 75 KKLVKKMKAENLDLAKRNRI----GCTALFYAAASGSVELVKATMEGNEDITMVPQDDKD 130
K LV+K + D A R G TAL YAA + +VK + E + + D+D
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLV--GEKGSNKDKQDED 312
Query: 131 RMLPIVGAASLGHTEVVEFLYRE 153
PI AA G EVV +L ++
Sbjct: 313 GKTPIXLAAQEGRIEVVXYLIQQ 335
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 87 DLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEV 146
D+ N G TAL A +V++VK +E +I Q D + +P+ AAS G+ ++
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANIN---QPDNEGWIPLHAAASCGYLDI 121
Query: 147 VEFLYRETKNSLKDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLG 206
E+L + + V + ++ +T L + + + QN + ++ ++
Sbjct: 122 AEYLISQGAH-----------VGAVNSEG-DTPLDIAEEEAMEELLQNE--VNRQGVDIE 167
Query: 207 AKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSV 266
A E ER + W N D+ + ++G T H+A + E+ K + +
Sbjct: 168 AARKEEERIMLRDARQWLNS-GHINDV--RHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 267 ADLLFDSKDKDGNNILHLA 285
++ KD DG LH A
Sbjct: 225 VNI----KDYDGWTPLHAA 239
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 93 RIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
+ G TAL AAA G E++K ++ D+ + D D P+ AA G E L
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNI---KDYDGWTPLHAAAHWGKEEACRIL 251
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 60 TALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIG----CTALFYAAASGSVELVKATM 115
T LH AA NRID VK + K A +++G T L +A G + +V M
Sbjct: 44 TLLHWAAINNRIDLVKYYISKG-------AIVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
+ D +++ D + I AA GHT +V +L
Sbjct: 97 KYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYL 128
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 51 GDVITRLG----DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASG 106
G ++ +LG T LH A + V +L+K D + + GC+ + AA G
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQFG 120
Query: 107 SVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHT 144
+V + +D+ M+ D++ M P++ AA H+
Sbjct: 121 HTSIVAYLIAKGQDVDMM---DQNGMTPLMWAAYRTHS 155
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G + LH+AA+A R + VK L+ K N N+ GCT L YAA+ E+ +EG
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGAQVN----AVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 118 NEDITMVPQDDKDR--MLPIVGAASLGHTEVVE-FLYRETKNSLKDDD 162
+ D KD + AA+ G+ +++ LY + +++D +
Sbjct: 129 GAN-----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 171
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
A SG +E +K ++ D ++ + D+D + A S GHTE+VEFL +
Sbjct: 14 AYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G + LH+AA+A R + VK L+ K N N+ GCT L YAA+ E+ +EG
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGAQVN----AVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 118 NEDITMVPQDDKDR--MLPIVGAASLGHTEVVE-FLYRETKNSLKDDD 162
+ D KD + AA+ G+ +++ LY + +++D +
Sbjct: 130 GAN-----PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 172
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 103 AASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
A SG +E +K ++ D ++ + D+D + A S GHTE+VEFL +
Sbjct: 15 AYSGKLEELKESILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
R G TA H+A ++ L+ LDL RN G TAL A + E V+ +
Sbjct: 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL 136
Query: 116 EGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN 156
E DI V D K P++ A +V+ L + N
Sbjct: 137 ERGADIDAV--DIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
Query: 72 DFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDR 131
D ++ +++ + N++ AK ++ G TAL A + G V++VKA + D+ + QDD D
Sbjct: 161 DDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNV--QDD-DG 216
Query: 132 MLPIVGAASLGHTEVVEFLYR--ETKNSLKDDDCIELLVKLIETDSYETALHVLARKNL 188
++ A GH E+ L SL D D L+ ++ E A + +R N+
Sbjct: 217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 55 TRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKAT 114
++ G TAL +A + R+D VK L+ A D+ ++ G TAL A G E+
Sbjct: 180 SQAGQTALMLAVSHGRVDVVKALL----ACEADVNVQDDDGSTALMCACEHGHKEIAGLL 235
Query: 115 ME-GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLY 151
+ + DI++ D+D ++ A G +E+ LY
Sbjct: 236 LAVPSCDISLT---DRDGSTALMVALDAGQSEIASMLY 270
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 17 VEEIRTRRLKLYRVALNGDWARAKVIYDEHKDEI-GDVITRLGDTALHVAAAANRIDFVK 75
+EE+R +L A GD + + H++ + D + R G TAL V +
Sbjct: 3 LEEVRAGD-RLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFGSTA-IAL 58
Query: 76 KLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPI 135
+L+K+ + N+ ++ G + + AA +G ++ +K +E D+ VP D LPI
Sbjct: 59 ELLKQGASPNV----QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VP--DGTGALPI 111
Query: 136 VGAASLGHTEVVEFLYRETKNSLKD 160
A GHT VV FL E+ +D
Sbjct: 112 HLAVQEGHTAVVSFLAAESDLHRRD 136
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G + LH+AA+A R + VK L+ +K +++ +N GCT L YAA+ E+ +EG
Sbjct: 73 GWSPLHIAASAGRDEIVKALL--VKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEG 128
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKN 156
+ D M AA+ G+ ++V L Y+ + N
Sbjct: 129 GANPDAKDHYDATAMHR---AAAKGNLKMVHILLFYKASTN 166
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D ++ + D+D + A S GHTE+VEFL +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
D + R G TAL V + +L+K+ + N+ ++ G + + AA +G ++ +
Sbjct: 30 DALNRFGKTALQVMMFGSTA-IALELLKQGASPNV----QDTSGTSPVHDAARTGFLDTL 84
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKD 160
K +E D+ VP D LPI A GHT VV FL E+ +D
Sbjct: 85 KVLVEHGADVN-VP--DGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 62 LHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
+HVAA + D V++L++ + + +NR GCTAL A G V+ K
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTI----QNRFGCTALHLACKFGCVDTAK 70
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ +R G T L AA +E+V+ ++ D+ D D P+
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA---HDNDGSTPLHL 86
Query: 138 AASLGHTEVVEFLYR 152
AA GH E+VE L +
Sbjct: 87 AALFGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
R G+T LH+AA + ++ V+ L+K D+ + G T L AA G +E+V+ +
Sbjct: 45 RKGNTPLHLAADYDHLEIVEVLLK----HGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 116 EGNEDIT 122
+ D+
Sbjct: 101 KHGADVN 107
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 58 GDTALHVAAAANRIDFVKKLV-KKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G T H+A + ++ VK L + +K DL K G T L A E+ + +E
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD 162
+ + DK +P+ AAS+G +++E L K+++ D
Sbjct: 129 NGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G + LH+AA+A + VK L+ +K +++ +N GCT L YAA+ E+ +EG
Sbjct: 73 GWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQN--GCTPLHYAASKNRHEIAVMLLEG 128
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL--YRETKN 156
+ D M AA+ G+ ++V L Y+ + N
Sbjct: 129 GANPDAKDHYDATAMHR---AAAKGNLKMVHILLFYKASTN 166
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 120 DITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
D ++ + D+D + A S GHTE+VEFL +
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH A +R D V+ L++ D R + G T AA +GSV+L+K +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLR----HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSK 114
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN 156
D+ + D + AA G + ++FLY+ N
Sbjct: 115 GADVN---ECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 150
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 58 GDTALHVAAAANRIDFVKKLV-KKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G T H+A + ++ VK L + +K DL K G T L A E+ + +E
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD 162
+ + DK +P+ AAS+G +++E L K+++ D
Sbjct: 129 NGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
D + R G TAL V + +L+K+ + N+ A G + + AA +G ++ +
Sbjct: 36 DALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQDAS----GTSPVHDAARTGFLDTL 90
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKD 160
K +E D+ + D LPI A GH+ VV FL E+ +D
Sbjct: 91 KVLVEHGADVNAL---DSTGSLPIHLAIREGHSSVVSFLAPESDLHHRD 136
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 58 GDTALHVAAAANRIDFVKKLV-KKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME 116
G T H+A + ++ VK L + +K DL K G T L A E+ + +E
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKP---DLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 117 GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDD 162
+ + DK +P+ AAS+G +++E L K+++ D
Sbjct: 129 NGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 52 DVITRLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
D + R G TAL V + +L+K+ + N+ A G + + AA +G ++ +
Sbjct: 38 DALNRFGKTALQVMMFGSPA-VALELLKQGASPNVQDAS----GTSPVHDAARTGFLDTL 92
Query: 112 KATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKD 160
K +E D+ + D LPI A GH+ VV FL E+ +D
Sbjct: 93 KVLVEHGADVNAL---DSTGSLPIHLAIREGHSSVVSFLAPESDLHHRD 138
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEG 117
G T LH A +R D V+ L++ D R + G T AA +GSV+L+K +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLR----HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94
Query: 118 NEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKN 156
D+ + D + AA G + ++FLY+ N
Sbjct: 95 GADVN---ECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATM 115
++GDT LH+AA ++ V+ L+K D+ + G T L AA +G +E+V+ +
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKN----GADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 116 EGNEDIT 122
+ D+
Sbjct: 134 KYGADVN 140
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
L AA +G + V+ M D+ + D+D + P+ AA LGH E+VE L +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAL---DEDGLTPLHLAAQLGHLEIVEVLLK 68
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ +D + P+
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA---EDNFGITPLHL 86
Query: 138 AASLGHTEVVEFLYR 152
AA GH E+VE L +
Sbjct: 87 AAIRGHLEIVEVLLK 101
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 77 LVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV 136
LV+++ E D + N G TAL A +G E+VK ++ ++ D D P+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLH 108
Query: 137 GAASLGHTEVVEFL 150
AAS + +V +FL
Sbjct: 109 CAASCNNVQVCKFL 122
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ D R P+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDSWGRT-PLHL 86
Query: 138 AASLGHTEVVEFL 150
AA++GH E+VE L
Sbjct: 87 AATVGHLEIVEVL 99
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 77 LVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIV 136
LV+++ E D + N G TAL A +G E+VK ++ ++ D D P+
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA---DSDGWTPLH 108
Query: 137 GAASLGHTEVVEFL 150
AAS + +V +FL
Sbjct: 109 CAASCNNVQVCKFL 122
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ +++G T L AA + +E+V+ ++ D+ + D P+
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI---DAIGETPLHL 86
Query: 138 AASLGHTEVVEFLYR 152
A GH E+VE L +
Sbjct: 87 VAMYGHLEIVEVLLK 101
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 47/167 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
L AA +G + V+ M D+ DKD P+ AA GH E+VE L + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 60
Query: 159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL 218
V + D Y T LH+ AR E LE+
Sbjct: 61 ---------VNAKDKDGY-TPLHLAAR---------------------------EGHLEI 83
Query: 219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS 265
VE+ L K + D++G+T H+A EI + + + +
Sbjct: 84 VEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD 272
E LE+VE+L K + D++G+T H+A EI + + + AD+ +
Sbjct: 45 EGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADV--N 95
Query: 273 SKDKDGNNILHLAGK 287
+KDKDG LHLA +
Sbjct: 96 AKDKDGYTPLHLAAR 110
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 238 DENGHTIFHIAVSNRMREIFKFIFEISSVADLLFDSKDKDGNNILHLAGK 287
D++G+T H+A EI + + + AD+ ++KDKDG LHLA +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAG--ADV--NAKDKDGYTPLHLAAR 77
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ +D R P+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRT-PLHL 86
Query: 138 AASLGHTEVVEFL 150
AA++GH E+VE L
Sbjct: 87 AATVGHLEIVEVL 99
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 47/167 (28%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSL 158
L AA +G + V+ M D+ DKD P+ AA GH E+VE L + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 72
Query: 159 KDDDCIELLVKLIETDSYETALHVLARKNLTSSNQNPRGIFQRYFNLGAKAVENERALEL 218
V + D Y T LH+ AR E LE+
Sbjct: 73 ---------VNAKDKDGY-TPLHLAAR---------------------------EGHLEI 95
Query: 219 VELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISS 265
VE+ L K + D++G+T H+A EI + + + +
Sbjct: 96 VEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 213 ERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEISSVADLLFD 272
E LE+VE+L K + D++G+T H+A EI + + + AD+ +
Sbjct: 57 EGHLEIVEVL-----LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADV--N 107
Query: 273 SKDKDGNNILHLAGK 287
+KDKDG LHLA +
Sbjct: 108 AKDKDGYTPLHLAAR 122
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 204 NLGAKAVENERALELVELLWENFLFKYPDLIWKFDENGHTIFHIAVSNRMREIFKFIFEI 263
+LG K +E RA + E+ + D+ K D++G+T H+A EI + + +
Sbjct: 13 DLGKKLLEAARAGQDDEVRI--LMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 264 SSVADLLFDSKDKDGNNILHLAGK 287
AD+ ++KDKDG LHLA +
Sbjct: 70 G--ADV--NAKDKDGYTPLHLAAR 89
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA---ASGSVELVK 112
R G TALH+AAA +R D K+L++ N+ ++ +G T L A A G +++
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 110
Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
+ D M D P++ AA L VE + + NS D + ++ L K
Sbjct: 111 RNRATDLDARM-----HDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGK 158
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L AA G +E+V+ ++ D+ D R P+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ASDIWGRT-PLHL 86
Query: 138 AASLGHTEVVEFL 150
AA++GH E+VE L
Sbjct: 87 AATVGHLEIVEVL 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 58 GDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATME- 116
G TALH AAA N + V L+ M N D ++ T LF AA GS E KA ++
Sbjct: 151 GKTALHWAAAVNNTEAVNILL--MHHANRD--AQDDKDETPLFLAAREGSYEASKALLDN 206
Query: 117 -GNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL 150
N +IT D DR+ V + L H ++V L
Sbjct: 207 FANREIT----DHMDRLPRDVASERL-HHDIVRLL 236
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA---ASGSVELVK 112
R G+TALH+AA +R D K+L++ N+ ++ +G T L A A G +++
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 78
Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
+ D M D P++ AA L VE + + NS D + ++ L K
Sbjct: 79 RNRATDLDARM-----HDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGK 126
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA---ASGSVELVK 112
R G+TALH+AA +R D K+L++ N+ ++ +G T L A A G +++
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 111
Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
+ D M D P++ AA L VE + + NS D + ++ L K
Sbjct: 112 RNRATDLDARM-----HDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGK 159
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAA---ASGSVELVK 112
R G+TALH+AA +R D K+L++ N+ ++ +G T L A A G +++
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 110
Query: 113 ATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYRETKNSLKDDDCIELLVK 169
+ D M D P++ AA L VE + + NS D + ++ L K
Sbjct: 111 RNRATDLDARM-----HDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGK 158
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 78 VKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVG 137
V+ + A D+ + G T L +G +E+++ ++ D+ DK P+
Sbjct: 30 VRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN---ASDKSGWTPLHL 86
Query: 138 AASLGHTEVVEFLYR 152
AA GH E+VE L +
Sbjct: 87 AAYRGHLEIVEVLLK 101
>pdb|1MW5|A Chain A, Structure Of Hi1480 From Haemophilus Influenzae
pdb|1MW5|B Chain B, Structure Of Hi1480 From Haemophilus Influenzae
Length = 187
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 59 DTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTAL 99
D AL +R F+ +L+ K+K+ +L + + N+IG L
Sbjct: 77 DDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPL 117
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 54 ITRLGDTALHVAAAANRIDFVKKLVK-KMKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
+T GDTALH+A F+ L+ E LDL +N +G TAL AA G V+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEASTVE 62
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 54 ITRLGDTALHVAAAANRIDFVKKLVK-KMKAENLDLAKRNRIGCTALFYAAASGSVELVK 112
+T GDTALH+A F+ L+ E LDL +N +G TAL AA G V+
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEASTVE 62
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 76 KLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELVKATMEGN 118
K+VK + LD ++ + G TAL+YA SG+ + VK ++ N
Sbjct: 76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKN 118
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 29 RVALNG-DWARAKVIY----DEHKDEIGDVIT----------RLGDTALHVAAAANRIDF 73
RV +NG D A + +Y HKD + + T +LGDTALH AA D
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADI 155
Query: 74 VKKLVKK 80
V+ L+ K
Sbjct: 156 VQLLLAK 162
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 RLGDTALHVAAAANRIDFVKKLVKKMKAENLDLAKRNRIGCTALFYAAASGSVELV 111
R G+TALH+AA +R D K+L++ + D ++ +G T L +AA S + V
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLEA----SADAXIQDNMGRTPL-HAAVSADAQGV 70
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 99 LFYAAASGSVELVKATMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFLYR 152
L AA +G + V+ M D+ DKD P+ AA GH E+VE L +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNA---KDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 114 TMEGNEDITMVPQDDKDRMLPIVGAASLGHTEVVEFL-YRETKNSLKDDDCIELLVKLIE 172
++G + IT Q DK+R IV + T ++L YRE L++DD I L+K
Sbjct: 89 VLKGEQIITDGIQQDKERRTTIVYVSK--STRTPDWLPYREADXYLQEDDIIFELIK--R 144
Query: 173 TDSYETALHVLARK 186
+ + + +L+RK
Sbjct: 145 SKVFHLSTFILSRK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,633,829
Number of Sequences: 62578
Number of extensions: 468754
Number of successful extensions: 1459
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 206
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)