Query 037505
Match_columns 483
No_of_seqs 232 out of 2847
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 12:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.1E-35 2.4E-40 260.7 12.7 385 2-469 72-467 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 1.2E-25 2.7E-30 189.2 10.9 279 3-342 99-382 (419)
3 KOG4341 F-box protein containi 99.9 4.8E-25 1E-29 194.2 9.9 274 204-483 177-456 (483)
4 PLN00113 leucine-rich repeat r 99.8 1.8E-19 4E-24 192.2 15.0 369 61-468 86-466 (968)
5 PLN00113 leucine-rich repeat r 99.8 5.1E-19 1.1E-23 188.8 15.9 355 68-469 69-443 (968)
6 KOG4194 Membrane glycoprotein 99.7 1E-18 2.2E-23 160.8 2.2 311 91-438 87-426 (873)
7 cd00116 LRR_RI Leucine-rich re 99.7 4.8E-15 1E-19 138.0 24.6 169 296-469 109-293 (319)
8 cd00116 LRR_RI Leucine-rich re 99.7 5.9E-15 1.3E-19 137.4 24.7 270 190-465 21-318 (319)
9 KOG2120 SCF ubiquitin ligase, 99.7 1.5E-16 3.3E-21 134.8 10.5 253 195-458 139-391 (419)
10 KOG4194 Membrane glycoprotein 99.7 5.9E-18 1.3E-22 155.8 -1.4 324 106-450 124-461 (873)
11 KOG1947 Leucine rich repeat pr 99.6 7.7E-15 1.7E-19 145.1 14.0 228 205-451 202-450 (482)
12 PLN03210 Resistant to P. syrin 99.5 1.5E-13 3.2E-18 147.4 12.6 57 107-165 611-668 (1153)
13 KOG1909 Ran GTPase-activating 99.5 1.1E-12 2.4E-17 114.2 14.8 260 188-466 26-310 (382)
14 PLN03210 Resistant to P. syrin 99.5 4.2E-13 9.2E-18 144.0 14.8 290 107-442 589-907 (1153)
15 KOG1947 Leucine rich repeat pr 99.5 2.1E-13 4.6E-18 134.8 11.4 258 204-468 175-441 (482)
16 KOG1909 Ran GTPase-activating 99.4 1.8E-11 3.8E-16 106.9 16.9 237 207-474 110-377 (382)
17 KOG0444 Cytoskeletal regulator 99.3 4.1E-14 8.9E-19 132.1 -5.1 103 296-411 223-325 (1255)
18 KOG0444 Cytoskeletal regulator 99.3 3.7E-14 8.1E-19 132.3 -6.2 318 106-467 31-352 (1255)
19 KOG0618 Serine/threonine phosp 99.1 6.6E-12 1.4E-16 122.7 -2.0 87 65-170 43-130 (1081)
20 KOG3207 Beta-tubulin folding c 99.1 3.2E-11 6.8E-16 108.3 2.3 167 97-280 108-281 (505)
21 KOG0618 Serine/threonine phosp 99.1 4.7E-12 1E-16 123.7 -3.2 154 296-469 360-515 (1081)
22 KOG3207 Beta-tubulin folding c 99.0 5.5E-11 1.2E-15 106.8 0.3 208 214-437 118-335 (505)
23 KOG3665 ZYG-1-like serine/thre 98.9 1.2E-08 2.6E-13 102.1 10.8 155 296-460 123-281 (699)
24 PRK15387 E3 ubiquitin-protein 98.9 2.4E-09 5.2E-14 107.5 5.3 18 452-469 443-460 (788)
25 PF12937 F-box-like: F-box-lik 98.8 1.2E-09 2.6E-14 68.7 0.2 36 3-41 2-37 (47)
26 PRK15387 E3 ubiquitin-protein 98.7 9.5E-08 2.1E-12 96.3 10.1 14 400-413 443-456 (788)
27 PF14580 LRR_9: Leucine-rich r 98.7 7.2E-09 1.6E-13 84.9 1.7 58 107-166 19-76 (175)
28 COG5238 RNA1 Ran GTPase-activa 98.7 8.9E-07 1.9E-11 75.3 14.0 255 190-469 28-318 (388)
29 KOG0472 Leucine-rich repeat pr 98.6 1.8E-09 3.8E-14 96.3 -5.0 140 107-255 160-308 (565)
30 KOG3665 ZYG-1-like serine/thre 98.5 3.1E-07 6.7E-12 92.1 9.0 73 91-163 132-204 (699)
31 COG5238 RNA1 Ran GTPase-activa 98.5 1.9E-06 4.1E-11 73.4 11.2 247 106-413 29-314 (388)
32 KOG2982 Uncharacterized conser 98.4 1.5E-07 3.2E-12 81.0 3.8 140 188-331 67-209 (418)
33 PRK15370 E3 ubiquitin-protein 98.4 1E-06 2.2E-11 89.4 10.2 106 348-471 325-432 (754)
34 KOG2982 Uncharacterized conser 98.4 2.5E-07 5.4E-12 79.6 4.8 212 244-469 71-292 (418)
35 PRK15370 E3 ubiquitin-protein 98.4 1.6E-06 3.4E-11 88.0 9.8 255 107-423 178-435 (754)
36 PF14580 LRR_9: Leucine-rich r 98.4 4.4E-07 9.5E-12 74.4 4.5 130 130-278 17-148 (175)
37 smart00256 FBOX A Receptor for 98.3 2.1E-07 4.6E-12 56.6 1.7 34 5-41 1-34 (41)
38 KOG3864 Uncharacterized conser 98.3 6.1E-07 1.3E-11 73.0 4.4 106 349-459 102-209 (221)
39 PF00646 F-box: F-box domain; 98.3 1.6E-07 3.4E-12 59.4 0.2 37 3-42 4-40 (48)
40 KOG0472 Leucine-rich repeat pr 98.3 3.4E-07 7.4E-12 82.1 1.6 12 193-204 298-309 (565)
41 KOG4237 Extracellular matrix p 98.2 6.8E-08 1.5E-12 86.2 -3.0 93 315-416 268-360 (498)
42 KOG4237 Extracellular matrix p 98.2 1.5E-07 3.3E-12 84.0 -1.4 89 372-466 270-358 (498)
43 KOG3864 Uncharacterized conser 98.2 9.9E-07 2.1E-11 71.8 2.8 84 378-464 103-186 (221)
44 KOG1259 Nischarin, modulator o 98.1 4.1E-06 9E-11 72.4 4.3 171 98-278 173-360 (490)
45 KOG4658 Apoptotic ATPase [Sign 98.0 2.3E-06 5.1E-11 88.3 2.2 61 106-166 544-607 (889)
46 KOG1259 Nischarin, modulator o 97.9 3.5E-06 7.6E-11 72.8 1.0 232 208-467 173-412 (490)
47 KOG1859 Leucine-rich repeat pr 97.6 2.1E-05 4.4E-10 76.4 1.2 217 207-468 74-293 (1096)
48 KOG4658 Apoptotic ATPase [Sign 97.6 9.7E-05 2.1E-09 76.6 5.4 110 189-305 542-652 (889)
49 PF13855 LRR_8: Leucine rich r 97.2 0.00027 5.8E-09 47.2 2.2 12 215-226 47-58 (61)
50 smart00367 LRR_CC Leucine-rich 97.2 0.00057 1.2E-08 36.3 3.0 24 427-450 1-24 (26)
51 PF13855 LRR_8: Leucine rich r 97.1 0.00032 7E-09 46.7 2.0 34 133-166 2-37 (61)
52 KOG0617 Ras suppressor protein 97.0 2.4E-05 5.2E-10 62.0 -4.9 58 107-166 56-114 (264)
53 KOG4308 LRR-containing protein 97.0 0.00087 1.9E-08 64.8 4.5 217 246-469 235-475 (478)
54 KOG1859 Leucine-rich repeat pr 96.8 0.00023 5E-09 69.4 -0.8 90 368-469 179-269 (1096)
55 KOG2739 Leucine-rich acidic nu 96.8 0.00026 5.7E-09 60.5 -0.4 66 150-228 61-127 (260)
56 smart00367 LRR_CC Leucine-rich 96.8 0.002 4.3E-08 34.2 3.1 22 376-397 2-23 (26)
57 KOG0617 Ras suppressor protein 96.7 3.7E-05 8E-10 61.0 -5.8 103 107-226 33-136 (264)
58 KOG4308 LRR-containing protein 96.7 0.0011 2.3E-08 64.2 2.6 200 246-451 89-312 (478)
59 PLN03150 hypothetical protein; 96.7 0.0041 8.8E-08 63.1 6.8 106 133-255 419-526 (623)
60 PRK15386 type III secretion pr 96.6 0.0084 1.8E-07 56.1 7.9 49 192-252 72-120 (426)
61 KOG2123 Uncharacterized conser 96.5 0.00056 1.2E-08 59.0 -0.4 101 107-223 19-123 (388)
62 PF12799 LRR_4: Leucine Rich r 96.5 0.0024 5.2E-08 39.0 2.5 38 428-468 1-38 (44)
63 PRK15386 type III secretion pr 96.4 0.0058 1.3E-07 57.1 5.6 55 190-255 50-105 (426)
64 KOG1644 U2-associated snRNP A' 96.3 0.0032 6.8E-08 51.8 2.8 109 131-254 41-150 (233)
65 PF12799 LRR_4: Leucine Rich r 96.1 0.0072 1.6E-07 36.9 3.0 14 374-387 22-35 (44)
66 PLN03150 hypothetical protein; 96.1 0.012 2.5E-07 59.9 6.1 106 350-464 420-525 (623)
67 KOG2123 Uncharacterized conser 96.0 0.0019 4E-08 55.8 0.0 103 132-250 19-123 (388)
68 KOG2739 Leucine-rich acidic nu 95.3 0.0064 1.4E-07 52.3 0.9 86 347-437 64-152 (260)
69 PLN03215 ascorbic acid mannose 95.3 0.0095 2.1E-07 55.0 2.0 37 3-41 5-41 (373)
70 KOG0281 Beta-TrCP (transducin 94.9 0.016 3.4E-07 51.4 2.0 37 2-41 75-115 (499)
71 COG4886 Leucine-rich repeat (L 94.8 0.02 4.3E-07 55.0 2.8 32 296-331 256-287 (394)
72 PF13516 LRR_6: Leucine Rich r 94.7 0.025 5.4E-07 29.2 1.7 19 453-471 1-19 (24)
73 KOG2997 F-box protein FBX9 [Ge 94.4 0.017 3.6E-07 50.9 1.1 36 3-41 108-148 (366)
74 KOG1644 U2-associated snRNP A' 94.4 0.036 7.8E-07 45.9 2.9 111 349-469 43-155 (233)
75 COG4886 Leucine-rich repeat (L 94.2 0.039 8.4E-07 53.0 3.3 132 318-468 160-291 (394)
76 PF13516 LRR_6: Leucine Rich r 94.1 0.065 1.4E-06 27.6 2.5 23 106-128 1-23 (24)
77 PF13013 F-box-like_2: F-box-l 91.8 0.14 3.1E-06 38.1 2.5 28 3-33 23-50 (109)
78 KOG4579 Leucine-rich repeat (L 91.4 0.11 2.4E-06 40.2 1.6 110 349-468 28-137 (177)
79 smart00368 LRR_RI Leucine rich 91.3 0.34 7.5E-06 26.0 3.0 25 107-131 2-26 (28)
80 KOG0531 Protein phosphatase 1, 91.0 0.11 2.5E-06 50.0 1.6 36 131-166 94-130 (414)
81 KOG0531 Protein phosphatase 1, 89.7 0.089 1.9E-06 50.8 -0.3 103 320-438 94-196 (414)
82 smart00368 LRR_RI Leucine rich 88.9 0.72 1.6E-05 24.8 3.0 24 192-215 2-25 (28)
83 KOG3763 mRNA export factor TAP 88.9 0.68 1.5E-05 44.7 4.8 41 372-412 214-254 (585)
84 PF13504 LRR_7: Leucine rich r 88.1 0.31 6.7E-06 22.6 1.1 14 454-467 1-14 (17)
85 KOG4579 Leucine-rich repeat (L 87.5 0.55 1.2E-05 36.6 2.7 63 102-166 72-135 (177)
86 KOG0532 Leucine-rich repeat (L 83.4 0.45 9.9E-06 46.1 0.7 103 107-229 143-246 (722)
87 KOG3763 mRNA export factor TAP 83.3 1.6 3.5E-05 42.2 4.2 36 349-386 219-254 (585)
88 KOG0274 Cdc4 and related F-box 78.7 0.57 1.2E-05 46.4 -0.4 36 3-41 109-144 (537)
89 PF00560 LRR_1: Leucine Rich R 72.9 1.5 3.2E-05 21.9 0.4 13 455-467 1-13 (22)
90 smart00369 LRR_TYP Leucine-ric 70.8 3.2 6.9E-05 21.6 1.4 17 453-469 1-17 (26)
91 smart00370 LRR Leucine-rich re 70.8 3.2 6.9E-05 21.6 1.4 17 453-469 1-17 (26)
92 PF07723 LRR_2: Leucine Rich R 70.0 4.3 9.3E-05 21.3 1.8 24 378-401 2-25 (26)
93 KOG3735 Tropomodulin and leiom 65.9 15 0.00032 33.5 5.4 89 312-401 189-279 (353)
94 smart00365 LRR_SD22 Leucine-ri 60.3 7.3 0.00016 20.5 1.5 16 453-468 1-16 (26)
95 KOG3735 Tropomodulin and leiom 58.8 36 0.00077 31.2 6.4 85 368-454 190-280 (353)
96 KOG0532 Leucine-rich repeat (L 47.0 2.6 5.6E-05 41.2 -2.5 60 189-255 186-245 (722)
97 PF03382 DUF285: Mycoplasma pr 44.1 11 0.00025 28.8 1.0 9 448-456 80-88 (120)
98 smart00364 LRR_BAC Leucine-ric 35.9 19 0.00042 18.9 0.8 15 454-468 2-16 (26)
99 PF07735 FBA_2: F-box associat 32.3 1.6E+02 0.0034 19.7 5.8 20 405-425 35-54 (70)
100 PF13306 LRR_5: Leucine rich r 30.7 48 0.001 25.4 2.7 11 215-225 79-89 (129)
101 PF08004 DUF1699: Protein of u 25.8 91 0.002 23.9 3.1 34 402-437 17-50 (131)
102 KOG3926 F-box proteins [Amino 20.5 1.2E+02 0.0025 27.0 3.1 34 3-38 203-236 (332)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=260.72 Aligned_cols=385 Identities=26% Similarity=0.365 Sum_probs=291.6
Q ss_pred cccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcccccceeeecCC--CchhhhHHHhhcCC-CCeeEeeeeec
Q 037505 2 ENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPD--NSMVFSVSSLLSNY-PFVSSLSVALS 78 (483)
Q Consensus 2 ~~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~l~~l~l~~~ 78 (483)
+-.||+|++.+||++|+.+ .+++++.+|+.|...+....-|-++++... +.....+..+.+++ .+++.+.++
T Consensus 72 ~~~LPpEl~lkvFS~LDtk---sl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlr-- 146 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLDTK---SLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLR-- 146 (483)
T ss_pred cccCCHHHHHHHHHHHhHH---HHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccc--
Confidence 3479999999999999999 999999999999999765555555543222 22233455566655 688999998
Q ss_pred ccccccccccCCCCcccchhHHHHHhcCCCCceEEccCC-ccchhHHHHHHHhCCcCcEEeccCchhh---HHHHH-hcC
Q 037505 79 SSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAG-PVSVSSLLSLSEACNHLTSLTVSLSRPL---YFNWV-ASF 153 (483)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~~l-~~~ 153 (483)
++..+.+..+..+...||++++|.+.++ .+++..+..+++.|++|+.|++..|..+ .++.+ ..|
T Consensus 147 -----------G~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 147 -----------GCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred -----------ccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 7888899999999999999999999999 8999999999999999999988876543 23322 255
Q ss_pred CCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCch
Q 037505 154 SCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDG 233 (483)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 233 (483)
++|++|++++|+. ++..++..+..++..++.+...+|......
T Consensus 216 ~kL~~lNlSwc~q-------------------------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQ-------------------------------------ISGNGVQALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred hhHHHhhhccCch-------------------------------------hhcCcchHHhccchhhhhhhhcccccccHH
Confidence 5555555555533 122334444444555555544455544444
Q ss_pred hHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHH
Q 037505 234 GSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHL 313 (483)
Q Consensus 234 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 313 (483)
.+... ...++-+.++++..|..++|..+..+...| . .|+.|+.++|+++++..+
T Consensus 259 ~l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c------------------------~-~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 259 ALLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGC------------------------H-ALQVLCYSSCTDITDEVL 312 (483)
T ss_pred HHHHH-hccChHhhccchhhhccccchHHHHHhhhh------------------------h-HhhhhcccCCCCCchHHH
Confidence 33322 222244444444455444444444443333 2 688888888999999999
Q ss_pred HHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHH
Q 037505 314 SAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKE 393 (483)
Q Consensus 314 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 393 (483)
.++..++++|+.+.+++|..+++.+++.++..+. .|+.+++..|....+. -+..+..+||.|+.+.++.|..++|++
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~-~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~g 389 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP-HLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEG 389 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhhhhhhcCCh-hhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhh
Confidence 9999999999999999999999999999987655 9999999999877764 277788899999999999999999998
Q ss_pred HHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 394 FMAMLV---SCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 394 ~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+..+.. +...|..+.+.+|+.+++..++.+. .|++|+.+++..|..++..++..+..++|+++...+.+....+.
T Consensus 390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 390 IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred hhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence 877653 4679999999999999998887764 49999999999999999999999999999999888777666554
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=189.20 Aligned_cols=279 Identities=25% Similarity=0.275 Sum_probs=185.7
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcccccceeeecCCCchhhhHHHhhcCCCCeeEeeeeeccccc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSES 82 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 82 (483)
+.|||||++.||+.|+.+ |+.+++.|||||+++....+.|..++.........++..+.++. +..+.+.
T Consensus 99 ~slpDEill~IFs~L~kk---~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg--V~v~Rla------ 167 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKK---ELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG--VIVFRLA------ 167 (419)
T ss_pred ccCCHHHHHHHHHhccHH---HHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC--eEEEEcc------
Confidence 579999999999999999 99999999999999988888888887777765555566655543 2333322
Q ss_pred ccccccCCCCcccchhH-HHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceE
Q 037505 83 TATTSSRSNPSFFDRLL-FVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKEL 159 (483)
Q Consensus 83 ~~~~~~~~~~~~~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L 159 (483)
...+.++.+ +.....-..|+.|||+...++...+..+.+.|.+|+.|.+.+..-. ....++.-.+|+.|
T Consensus 168 --------r~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 168 --------RSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred --------hhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 122222322 2222223679999999999999999999888988888888776522 34455565666666
Q ss_pred eccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHH
Q 037505 160 SVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANF 239 (483)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 239 (483)
++++|. +++..++..+...|..|..|++++|...++. .-..+
T Consensus 240 nlsm~s-------------------------------------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V 281 (419)
T KOG2120|consen 240 NLSMCS-------------------------------------GFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAV 281 (419)
T ss_pred cccccc-------------------------------------ccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHH
Confidence 665543 2577778888899999999999999855543 43444
Q ss_pred hhccCCCcEEeCCCCC-CCcHHHHHHHHhhCCCCCeEEeecCCC-hhHHHHHHHhccccccEeeccCCCCCCHHHHHHHH
Q 037505 240 VKCSQGLEEVKLRTCR-SIVDVVLLNLAENCDSLNSLLVYDGCS-REGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVA 317 (483)
Q Consensus 240 ~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 317 (483)
..-.++|+.|+++|+. .+.+..+..+...||+|.+|+++++.. ..+....+...+ .|++|+++.|+.+....+..+.
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lSlsRCY~i~p~~~~~l~ 360 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLSLSRCYDIIPETLLELN 360 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheeeehhhhcCCChHHeeeec
Confidence 4555789999999875 334445666777787777777765542 223333333333 5666666666655554444332
Q ss_pred HcCCCCcEEEccCCCccChhhHHHH
Q 037505 318 VKFRGLSVLRLQSCCLVSGDGLKAL 342 (483)
Q Consensus 318 ~~~~~L~~L~l~~~~~~~~~~~~~~ 342 (483)
. .|.|.+|++.|| +++..++.+
T Consensus 361 s-~psl~yLdv~g~--vsdt~mel~ 382 (419)
T KOG2120|consen 361 S-KPSLVYLDVFGC--VSDTTMELL 382 (419)
T ss_pred c-CcceEEEEeccc--cCchHHHHH
Confidence 2 556666666655 244444433
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=4.8e-25 Score=194.20 Aligned_cols=274 Identities=24% Similarity=0.359 Sum_probs=205.6
Q ss_pred CChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCC--
Q 037505 204 SEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGC-- 281 (483)
Q Consensus 204 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-- 281 (483)
+++..+..+...|++|++|++..|..+++..+.....+| ++|+++++++|+.+.+.++..+.++|..++.+...++.
T Consensus 177 iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 177 ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 455556666666666666666666666555444333333 66666666666666666666666666666665554332
Q ss_pred ChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccc
Q 037505 282 SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVV 361 (483)
Q Consensus 282 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 361 (483)
..+.+......++ .+.++++..|+.++++.+..+...+..|++++.++|..+++..+..+..++. +|+.|.+.+|...
T Consensus 256 ~le~l~~~~~~~~-~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~-~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 256 ELEALLKAAAYCL-EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH-NLQVLELSGCQQF 333 (483)
T ss_pred cHHHHHHHhccCh-HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC-ceEEEeccccchh
Confidence 2222333333333 5777778788899999998998999999999999999999988888887764 9999999999875
Q ss_pred cCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh---cCCCCCEEeccCC
Q 037505 362 DREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSK---SCKRLQTVDIMHC 438 (483)
Q Consensus 362 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~c 438 (483)
.+.. +..+..+++.|+.+++..|..++|..+..++.+|+.|+.+.++.|..+||+++..+.. +...|+-+++++|
T Consensus 334 sd~~--ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 334 SDRG--FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhh--hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 5432 6778899999999999999999998899999999999999999999999998776654 3578999999999
Q ss_pred CCCChHHHHHHHHcCCCCcEEEeecc-CCcHHHHHHHhccCccccC
Q 037505 439 CRVGAEAVELFVLNSPQLRRVEVDEN-KLSDVVRTWASQKFIEVVV 483 (483)
Q Consensus 439 ~~i~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~ 483 (483)
+.+++..++.+. .|++|+.+++.++ .++.+++.-.++.-+++.|
T Consensus 412 p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 412 PLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred CCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 999998888775 8999999999885 5666666666666666544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.8e-19 Score=192.16 Aligned_cols=369 Identities=18% Similarity=0.097 Sum_probs=160.2
Q ss_pred HHhhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEecc
Q 037505 61 SSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVS 140 (483)
Q Consensus 61 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 140 (483)
...+..+++|+.|+++ ...+....-..+...+++|++|++++|.++..... ..+++|++|+++
T Consensus 86 ~~~~~~l~~L~~L~Ls--------------~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls 148 (968)
T PLN00113 86 SSAIFRLPYIQTINLS--------------NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLS 148 (968)
T ss_pred ChHHhCCCCCCEEECC--------------CCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECc
Confidence 3445677888888887 22222111122223356667777666643321110 134566666666
Q ss_pred Cchh--hHHHHHhcCCCcceEeccccccccccchhhhccC----------CCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 141 LSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYG----------ETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 141 ~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
++.- ..+..++.+++|++|++.+|.+.+.....+.+.. ............+.+|+.|++++|.+....
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 5542 2344555666666666666544211000000000 000001111223444555555554433211
Q ss_pred HHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHH
Q 037505 209 VGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQ 288 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 288 (483)
... +..+++|+.|+++++...... +.....+++|++|+++++... + .++.....+++|+.|+++++.....+..
T Consensus 229 p~~-l~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~-~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 229 PYE-IGGLTSLNHLDLVYNNLTGPI---PSSLGNLKNLQYLFLYQNKLS-G-PIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred Chh-HhcCCCCCEEECcCceecccc---ChhHhCCCCCCEEECcCCeee-c-cCchhHhhccCcCEEECcCCeeccCCCh
Confidence 111 233455555555443311110 111222345555555543211 0 1111222345555555544432222223
Q ss_pred HHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhH
Q 037505 289 FISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLL 368 (483)
Q Consensus 289 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 368 (483)
.+...+ +|+.|+++++ .+....... ...+++|+.|+++++. ++......+. ..++|+.|++++|......
T Consensus 303 ~~~~l~-~L~~L~l~~n-~~~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~p~~l~--~~~~L~~L~Ls~n~l~~~~---- 372 (968)
T PLN00113 303 LVIQLQ-NLEILHLFSN-NFTGKIPVA-LTSLPRLQVLQLWSNK-FSGEIPKNLG--KHNNLTVLDLSTNNLTGEI---- 372 (968)
T ss_pred hHcCCC-CCcEEECCCC-ccCCcCChh-HhcCCCCCEEECcCCC-CcCcCChHHh--CCCCCcEEECCCCeeEeeC----
Confidence 333333 5555555542 222111111 1235556666655542 2211111111 2235666666655543321
Q ss_pred HHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHH
Q 037505 369 ASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVEL 448 (483)
Q Consensus 369 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~ 448 (483)
+......++|+.|++++|. +... +......+++|+.|++.+|. ++... ......++.|+.|+++++. ++... ..
T Consensus 373 p~~~~~~~~L~~L~l~~n~-l~~~-~p~~~~~~~~L~~L~L~~n~-l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~~-~~ 446 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNS-LEGE-IPKSLGACRSLRRVRLQDNS-FSGEL-PSEFTKLPLVYFLDISNNN-LQGRI-NS 446 (968)
T ss_pred ChhHhCcCCCCEEECcCCE-eccc-CCHHHhCCCCCCEEECcCCE-eeeEC-ChhHhcCCCCCEEECcCCc-ccCcc-Ch
Confidence 1112234566666666554 2211 12223356777777777765 33221 1223346777777777743 33221 11
Q ss_pred HHHcCCCCcEEEeeccCCcH
Q 037505 449 FVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 449 l~~~~~~L~~L~l~~~~i~~ 468 (483)
....+++|+.|++++|++..
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred hhccCCCCcEEECcCceeee
Confidence 22357788888888877654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=5.1e-19 Score=188.76 Aligned_cols=355 Identities=17% Similarity=0.091 Sum_probs=171.8
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHH
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYF 147 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 147 (483)
..++.|+++ ...+....-..+ ..+++|+.|++++|.+.......+...+++|++|+++++.-...
T Consensus 69 ~~v~~L~L~--------------~~~i~~~~~~~~-~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 133 (968)
T PLN00113 69 SRVVSIDLS--------------GKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133 (968)
T ss_pred CcEEEEEec--------------CCCccccCChHH-hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence 578888887 222222221222 34799999999999765444444555789999999998753211
Q ss_pred HHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCC
Q 037505 148 NWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSC 227 (483)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 227 (483)
-....+++|++|++++|.+.+. .......+++|+.|++++|.+....... +..+++|+.|+++++
T Consensus 134 ~p~~~l~~L~~L~Ls~n~~~~~--------------~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n 198 (968)
T PLN00113 134 IPRGSIPNLETLDLSNNMLSGE--------------IPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN 198 (968)
T ss_pred cCccccCCCCEEECcCCccccc--------------CChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC
Confidence 1224688999999999876321 1122345567777777777653222222 245667777777665
Q ss_pred CCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCC
Q 037505 228 SGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLD 307 (483)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 307 (483)
...... +.....+++|+.|+++++.... .++.....+++|++|+++++.....+...+...+ +|++|+++++ .
T Consensus 199 ~l~~~~---p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n-~ 271 (968)
T PLN00113 199 QLVGQI---PRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQN-K 271 (968)
T ss_pred CCcCcC---ChHHcCcCCccEEECcCCccCC--cCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCC-e
Confidence 422111 1112233566666666543211 1122233455666666654432222223333333 5555555542 2
Q ss_pred CCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchh--------------------
Q 037505 308 LNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGL-------------------- 367 (483)
Q Consensus 308 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------- 367 (483)
+.......+ ..+++|++|++++|. ++......+. ..++|+.|++++|......+..
T Consensus 272 l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 272 LSGPIPPSI-FSLQKLISLDLSDNS-LSGEIPELVI--QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred eeccCchhH-hhccCcCEEECcCCe-eccCCChhHc--CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 211111111 224455555555432 2211111111 1234455555444433221100
Q ss_pred HHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHH
Q 037505 368 LASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVE 447 (483)
Q Consensus 368 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~ 447 (483)
++.....+++|+.|++++|. ++...... +..+++|+.|++.+|. ++... ......+++|+.|++++|. ++....
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~-~~~~~~L~~L~l~~n~-l~~~~-p~~~~~~~~L~~L~L~~n~-l~~~~p- 421 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNN-LTGEIPEG-LCSSGNLFKLILFSNS-LEGEI-PKSLGACRSLRRVRLQDNS-FSGELP- 421 (968)
T ss_pred CChHHhCCCCCcEEECCCCe-eEeeCChh-HhCcCCCCEEECcCCE-ecccC-CHHHhCCCCCCEEECcCCE-eeeECC-
Confidence 11112234445555554443 11111111 1134455555555443 22111 1222346777778777754 332211
Q ss_pred HHHHcCCCCcEEEeeccCCcHH
Q 037505 448 LFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 448 ~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
.....+++|+.|++++|.++..
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCc
Confidence 2224678888888888877654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1e-18 Score=160.81 Aligned_cols=311 Identities=19% Similarity=0.178 Sum_probs=146.0
Q ss_pred CCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hhHHHHHhcCCCcceEecccccccc
Q 037505 91 NPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDADE 168 (483)
Q Consensus 91 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~ 168 (483)
...+.+..+..+ ...|+|+++++..|.++ .++.+.....+|+.|++.++. .+.-+.++.++.|+.|+++.|.+..
T Consensus 87 nNkl~~id~~~f-~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~ 163 (873)
T KOG4194|consen 87 NNKLSHIDFEFF-YNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE 163 (873)
T ss_pred ccccccCcHHHH-hcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc
Confidence 344443333333 22566777766666332 222233334456666665543 2344556666667777776665532
Q ss_pred ccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcE
Q 037505 169 VENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEE 248 (483)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~ 248 (483)
++ .+......++++|++++|++++-+...| ..+.+|..|.++++. ++..+. ..++.+++|+.
T Consensus 164 i~--------------~~sfp~~~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~--r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 164 IP--------------KPSFPAKVNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQ--RSFKRLPKLES 225 (873)
T ss_pred cc--------------CCCCCCCCCceEEeeccccccccccccc-cccchheeeecccCc-ccccCH--HHhhhcchhhh
Confidence 22 1112234567777777776655444433 334466666666543 332222 23344466666
Q ss_pred EeCCCCCCCcHHHHHHHHhhCCC------------------------CCeEEeecCCChhHHHHHHHhccccccEeeccC
Q 037505 249 VKLRTCRSIVDVVLLNLAENCDS------------------------LNSLLVYDGCSREGLLQFISHCRCNLQKLDLRL 304 (483)
Q Consensus 249 L~l~~~~~~~~~~l~~~~~~~~~------------------------L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 304 (483)
|++..+. +-... ....+++++ +++|++..+....--..++.... .|+.|+++.
T Consensus 226 LdLnrN~-irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~ 302 (873)
T KOG4194|consen 226 LDLNRNR-IRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSY 302 (873)
T ss_pred hhccccc-eeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhccch
Confidence 6665432 10000 011233444 44444433221111111222222 455555554
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecC
Q 037505 305 PLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLS 384 (483)
Q Consensus 305 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 384 (483)
+.+....... ...+++|+.|+++.. .++.-.-..+. +...|++|.++++...... ...+..+.+|++|+|+
T Consensus 303 -NaI~rih~d~-WsftqkL~~LdLs~N-~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~----e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 303 -NAIQRIHIDS-WSFTQKLKELDLSSN-RITRLDEGSFR--VLSQLEELNLSHNSIDHLA----EGAFVGLSSLHKLDLR 373 (873)
T ss_pred -hhhheeecch-hhhcccceeEecccc-ccccCChhHHH--HHHHhhhhcccccchHHHH----hhHHHHhhhhhhhcCc
Confidence 2221111111 134667777777653 33322222222 2226777777776655432 2223455677777777
Q ss_pred CCcC---CCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 037505 385 YNEM---LLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHC 438 (483)
Q Consensus 385 ~~~~---~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c 438 (483)
.|.. +-| +-. .+..+++|+.|++.|+. +....-. .+.+++.|++|++.+.
T Consensus 374 ~N~ls~~IED-aa~-~f~gl~~LrkL~l~gNq-lk~I~kr-Afsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 374 SNELSWCIED-AAV-AFNGLPSLRKLRLTGNQ-LKSIPKR-AFSGLEALEHLDLGDN 426 (873)
T ss_pred CCeEEEEEec-chh-hhccchhhhheeecCce-eeecchh-hhccCcccceecCCCC
Confidence 6641 222 222 23357777777777754 3222222 2234677777777764
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=4.8e-15 Score=138.03 Aligned_cols=169 Identities=24% Similarity=0.242 Sum_probs=84.5
Q ss_pred cccEeeccCCCCCCHHHHHHHH---HcC-CCCcEEEccCCCccChhhHHHHHH--hcCCCCcEEeccccccccCcchhHH
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVA---VKF-RGLSVLRLQSCCLVSGDGLKALGV--AMSSGLEELALINCDVVDREPGLLA 369 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~---~~~-~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (483)
+|++|+++++ .+.+.+...+. ..+ ++|+.|++++|. ++..+...+.. ...++|+.|++++|.........+.
T Consensus 109 ~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 109 SLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred cccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 3555555553 23332322221 223 566666666653 33333322221 1123566666666655433211122
Q ss_pred HHHhcCCCCCEEecCCCcCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHHHHHHHhcC----CCCCEEeccCCCCCC
Q 037505 370 SLGQNLKQLRKLDLSYNEMLLDKEFMAM---LVSCNYLTELKLRGCKGLTSMAVVSMSKSC----KRLQTVDIMHCCRVG 442 (483)
Q Consensus 370 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~----~~L~~L~l~~c~~i~ 442 (483)
.....+++|++|++++|. +++.....+ +..+++|++|++++|. +++.++..+...+ +.|++|++++|. ++
T Consensus 187 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~ 263 (319)
T cd00116 187 EGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-IT 263 (319)
T ss_pred HHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CC
Confidence 222334567777776665 444443322 3345667777777664 6665555555443 567777777653 45
Q ss_pred hHHHHHHHH---cCCCCcEEEeeccCCcHH
Q 037505 443 AEAVELFVL---NSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 443 ~~~~~~l~~---~~~~L~~L~l~~~~i~~~ 469 (483)
+.+...+.+ .+++|+.+++++|.++++
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 444433332 345667777777777665
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=5.9e-15 Score=137.40 Aligned_cols=270 Identities=23% Similarity=0.210 Sum_probs=169.8
Q ss_pred cCCCceEEEccCCcCChhHH---HHHHHhCCCccEEecCCCCCCC-chhHHH--HHhhccCCCcEEeCCCCCCC--cHHH
Q 037505 190 TVLGLESLCLSGIRSEDTGV---GWLWRSCKRLKKLQLKSCSGIG-DGGSFA--NFVKCSQGLEEVKLRTCRSI--VDVV 261 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~-~~~~~~--~~~~~~~~L~~L~l~~~~~~--~~~~ 261 (483)
...+|+.|+++++.+++.+. .......++|+.++++++.... ...... .....+++|++|+++++... ....
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34457777777776654443 3334455667777776643211 111111 11222468888888776543 2223
Q ss_pred HHHHHhhCCCCCeEEeecCCCh-hHH---HHHHHhccccccEeeccCCCCCCHHHHH---HHHHcCCCCcEEEccCCCcc
Q 037505 262 LLNLAENCDSLNSLLVYDGCSR-EGL---LQFISHCRCNLQKLDLRLPLDLNNVHLS---AVAVKFRGLSVLRLQSCCLV 334 (483)
Q Consensus 262 l~~~~~~~~~L~~L~l~~~~~~-~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~ 334 (483)
+..+... ++|++|+++++... .+. ...+...+++|+.|++++| .++..... .....+++|++|+++++ .+
T Consensus 101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l 177 (319)
T cd00116 101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANN-GI 177 (319)
T ss_pred HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCC-CC
Confidence 3333344 56888888765432 222 2233334247899999885 45533333 23345678999999986 46
Q ss_pred ChhhHHHHHH--hcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcC----CCCCEEE
Q 037505 335 SGDGLKALGV--AMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSC----NYLTELK 408 (483)
Q Consensus 335 ~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~----~~L~~L~ 408 (483)
++.++..+.. ...++|+.|++++|.........+......+++|++|++++|. +++.++..++..+ +.|++|+
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEE
Confidence 6666554432 2235899999999987655433345555678999999999987 7887777776554 7999999
Q ss_pred ecCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCChHHHHHHHH---cC-CCCcEEEeeccC
Q 037505 409 LRGCKGLTSMAVVSMSK---SCKRLQTVDIMHCCRVGAEAVELFVL---NS-PQLRRVEVDENK 465 (483)
Q Consensus 409 l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~---~~-~~L~~L~l~~~~ 465 (483)
+.+|. +++.+...+.+ .+++|+.+++++ +.+++.+...+.. .. +.|+++++..+.
T Consensus 257 l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 257 LSCND-ITDDGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred ccCCC-CCcHHHHHHHHHHhcCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 99986 77656555444 457899999999 5578776555543 33 588999887764
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-16 Score=134.78 Aligned_cols=253 Identities=21% Similarity=0.279 Sum_probs=190.6
Q ss_pred eEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCe
Q 037505 195 ESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNS 274 (483)
Q Consensus 195 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~ 274 (483)
+.+++.+-.+....+..+.. .....+.+... .+.+..+.+.+...-..|++|++++ ..++...+..+.+.|.+|+.
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~--rgV~v~Rlar~-~~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLS--RGVIVFRLARS-FMDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccChhHHHHHHh--CCeEEEEcchh-hhcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHhhhh
Confidence 44556655566666666544 24555555432 1223334444444435799999997 46777888888999999999
Q ss_pred EEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEe
Q 037505 275 LLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELA 354 (483)
Q Consensus 275 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 354 (483)
|.+.+..-++.+...+.... +|+.|++++|.+++..++..+.+.|..|..|+++.|...++ .++.+..+..++|+.|+
T Consensus 215 lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~-~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE-KVTVAVAHISETLTQLN 292 (419)
T ss_pred ccccccccCcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch-hhhHHHhhhchhhhhhh
Confidence 99988877777766666555 89999999999999999999999999999999999975444 46666666778999999
Q ss_pred ccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEe
Q 037505 355 LINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVD 434 (483)
Q Consensus 355 l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 434 (483)
++|+...-.... +..+...||+|.+|+|+.|..+++..+..+. +++.|++|.++.|..+....+..+ ...|.|.+|+
T Consensus 293 lsG~rrnl~~sh-~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLd 369 (419)
T KOG2120|consen 293 LSGYRRNLQKSH-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLD 369 (419)
T ss_pred hhhhHhhhhhhH-HHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeee-ccCcceEEEE
Confidence 999764332222 5667788999999999999989987666665 899999999999998877665543 4479999999
Q ss_pred ccCCCCCChHHHHHHHHcCCCCcE
Q 037505 435 IMHCCRVGAEAVELFVLNSPQLRR 458 (483)
Q Consensus 435 l~~c~~i~~~~~~~l~~~~~~L~~ 458 (483)
+.+| ++|..++.+.+.||+|+.
T Consensus 370 v~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 370 VFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred eccc--cCchHHHHHHHhCccccc
Confidence 9998 678888888888998763
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=5.9e-18 Score=155.83 Aligned_cols=324 Identities=19% Similarity=0.127 Sum_probs=172.7
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEeccccccccccchhhhccCC----
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDADEVENEVFRRYGE---- 179 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---- 179 (483)
..+|+.|+|..|.|+...-.++. ..+.|+.|+++.+.-- ....+..-.++++|++.+|.+..++..-|.++..
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 35577777777755444444444 3566677766654311 1112223345677777666664443211111100
Q ss_pred ------CCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC--CCCchhHHHHHhhccCCCcEEeC
Q 037505 180 ------TGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS--GIGDGGSFANFVKCSQGLEEVKL 251 (483)
Q Consensus 180 ------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l 251 (483)
...-.....+.+++|+.|++..|++.....-. +.++++|+.|.+..++ .+.+. .+..+.++++|++
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG-----~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDG-----AFYGLEKMEHLNL 276 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCc-----ceeeecccceeec
Confidence 01111222344555555555555543221111 1445555555555432 12222 1222367888888
Q ss_pred CCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCC
Q 037505 252 RTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSC 331 (483)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 331 (483)
..+. +. ..-...+.++..|+.|+++.+....--.+..+-++ .|+.|+++. +.++...-..+ ..+..|++|.++..
T Consensus 277 ~~N~-l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 277 ETNR-LQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSHN 351 (873)
T ss_pred ccch-hh-hhhcccccccchhhhhccchhhhheeecchhhhcc-cceeEeccc-cccccCChhHH-HHHHHhhhhccccc
Confidence 7543 11 11123345677889999986653322233334444 899999998 44443222222 23567999999874
Q ss_pred CccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecC
Q 037505 332 CLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRG 411 (483)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 411 (483)
.++. +...+..+..+|++|+++++....-... -......+|.|+.|.+.||. +....-.+ +..++.|++|++.+
T Consensus 352 -si~~--l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNq-lk~I~krA-fsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 352 -SIDH--LAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQ-LKSIPKRA-FSGLEALEHLDLGD 425 (873)
T ss_pred -chHH--HHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCce-eeecchhh-hccCcccceecCCC
Confidence 3332 2222222445999999998876432111 22334569999999999987 33222223 34789999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHH
Q 037505 412 CKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFV 450 (483)
Q Consensus 412 ~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 450 (483)
+. |......++ ..+ +|++|.+..-..+.|-.+..+.
T Consensus 426 Na-iaSIq~nAF-e~m-~Lk~Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 426 NA-IASIQPNAF-EPM-ELKELVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred Cc-ceeeccccc-ccc-hhhhhhhcccceEEeccHHHHH
Confidence 87 332223332 223 7889988876666665554443
No 11
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.61 E-value=7.7e-15 Score=145.05 Aligned_cols=228 Identities=25% Similarity=0.355 Sum_probs=126.3
Q ss_pred ChhHHHHHHHhCCCccEEecCC-CCCCCchhHH-HHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCC-
Q 037505 205 EDTGVGWLWRSCKRLKKLQLKS-CSGIGDGGSF-ANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGC- 281 (483)
Q Consensus 205 ~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~- 281 (483)
++.++..+...+++|+.|++++ +......+.. ......+++|+.|+++.+..+++.++..++..|++|+.|.+..+.
T Consensus 202 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 202 TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSN 281 (482)
T ss_pred ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCc
Confidence 4444556666677777777765 2322222211 112233367777777776667777777777777777777655443
Q ss_pred -ChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCC---ccChhhHHHHHHhcCCCCcEEeccc
Q 037505 282 -SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCC---LVSGDGLKALGVAMSSGLEELALIN 357 (483)
Q Consensus 282 -~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~ 357 (483)
++.++......++ +|++|++++|..+++.++..+...|++|+.|.+..+. .+++.++..+.......+..+
T Consensus 282 lt~~gl~~i~~~~~-~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~---- 356 (482)
T KOG1947|consen 282 LTDEGLVSIAERCP-SLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAEL---- 356 (482)
T ss_pred cchhHHHHHHHhcC-cccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHH----
Confidence 5566666666665 5777777777777777777666667776666554432 233333332221000012222
Q ss_pred cccccCcchhHHHHHhcCCCCCEEecC--------------CCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 037505 358 CDVVDREPGLLASLGQNLKQLRKLDLS--------------YNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSM 423 (483)
Q Consensus 358 ~~~~~~~~~~l~~~~~~~~~L~~L~L~--------------~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 423 (483)
....+++++.+.+. +|+.++ ..+......+.+++.|.+..|...++..+...
T Consensus 357 -------------~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 357 -------------ILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred -------------HHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHH
Confidence 22334444444443 333333 33333333333467777777777777666665
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHHH
Q 037505 424 SKSCKRLQTVDIMHCCRVGAEAVELFVL 451 (483)
Q Consensus 424 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 451 (483)
...+..++.+++.+|+.++......+..
T Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred hhhhhccccCCccCcccccchhhhhhhc
Confidence 5556667777777777776666554443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=1.5e-13 Score=147.45 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACD 165 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~ 165 (483)
.+|++|++.++.+.. +..-...+++|+.|+++++... ....+..+++|++|++.+|.
T Consensus 611 ~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 611 ENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred cCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 456666666553321 1111123556666666554322 11234455566666665554
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-12 Score=114.22 Aligned_cols=260 Identities=20% Similarity=0.213 Sum_probs=124.3
Q ss_pred cccCCCceEEEccCCcCChhHHHHH---HHhCCCccEEecCCCCC--CCch--h----HHHHHhhccCCCcEEeCCCCCC
Q 037505 188 IDTVLGLESLCLSGIRSEDTGVGWL---WRSCKRLKKLQLKSCSG--IGDG--G----SFANFVKCSQGLEEVKLRTCRS 256 (483)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~--~~~~--~----~~~~~~~~~~~L~~L~l~~~~~ 256 (483)
......+++++++||.++....+.+ +...++|+..++++... ..+. . +...+.++ |+|+.|+|+++..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC-PKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC-CceeEeecccccc
Confidence 3456678999999998876555444 44555677777665210 0000 0 11111223 4666666665432
Q ss_pred C--cHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCcc
Q 037505 257 I--VDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLV 334 (483)
Q Consensus 257 ~--~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 334 (483)
- ....+..+.+.|..|++|.|.+|.....-...+.. -|.+|. .......-++|+++..++. .+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~-----------~~kk~~~~~~Lrv~i~~rN-rl 169 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA-----------VNKKAASKPKLRVFICGRN-RL 169 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH-----------HHhccCCCcceEEEEeecc-cc
Confidence 1 11233444444555555555444311100000000 000000 0000112445666665552 34
Q ss_pred ChhhHHHHHH--hcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH---hcCCCCCEEEe
Q 037505 335 SGDGLKALGV--AMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML---VSCNYLTELKL 409 (483)
Q Consensus 335 ~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~l 409 (483)
.+.+...++. ...|.|+.+.+..+.+...+..++..-+..||+|+.|+|..|. ++..+-..++ ..+|+|+.|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc
Confidence 4444433331 1224666666666666555443444445566777777776665 3443333333 24456666677
Q ss_pred cCCCCCCHHHHHHHHh----cCCCCCEEeccCCCCCChHHHHHHH---HcCCCCcEEEeeccCC
Q 037505 410 RGCKGLTSMAVVSMSK----SCKRLQTVDIMHCCRVGAEAVELFV---LNSPQLRRVEVDENKL 466 (483)
Q Consensus 410 ~~~~~i~~~~~~~l~~----~~~~L~~L~l~~c~~i~~~~~~~l~---~~~~~L~~L~l~~~~i 466 (483)
+.|. +.+.+...++. ..|+|+.|++.+| .|+..+...+. ...|.|..|++++|.+
T Consensus 249 ~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6665 44444333332 3466677777663 34544433222 1256666677777766
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=4.2e-13 Score=143.96 Aligned_cols=290 Identities=18% Similarity=0.218 Sum_probs=158.0
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
++|+.|.+.++.+... +.-. ...+|++|++.++.-. ....+..+++|+.|++.++... ...
T Consensus 589 ~~Lr~L~~~~~~l~~l--P~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l---------------~~i 650 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCM--PSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL---------------KEI 650 (1153)
T ss_pred cccEEEEecCCCCCCC--CCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc---------------CcC
Confidence 5688888877633211 1111 2568889998876522 3445678889999999876431 011
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
+....+++|++|++++|.... .+...+..+++|+.|++++|..+...+.. ..+++|+.|++++|..+.. +
T Consensus 651 p~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~-----~ 720 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKS-----F 720 (1153)
T ss_pred CccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccc-----c
Confidence 123456889999999875321 12233467889999999888766543321 1347888888888754321 1
Q ss_pred HhhCCCCCeEEeecCCChh----------------------------HHHHHHHhccccccEeeccCCCCCCHHHHHHHH
Q 037505 266 AENCDSLNSLLVYDGCSRE----------------------------GLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVA 317 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~----------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 317 (483)
....++|+.|++.++.... .+.......+++|+.|+++++..+... ..-.
T Consensus 721 p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l--P~si 798 (1153)
T PLN03210 721 PDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL--PSSI 798 (1153)
T ss_pred ccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc--Chhh
Confidence 1123455555554332100 000111112235666666665433221 1112
Q ss_pred HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHH
Q 037505 318 VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 318 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 397 (483)
..+++|+.|++++|..+..... .+ ..++|+.|++++|..... ++ ...++|+.|+|+++. ++. +..-
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~-~~---~L~sL~~L~Ls~c~~L~~----~p---~~~~nL~~L~Ls~n~-i~~--iP~s 864 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPT-GI---NLESLESLDLSGCSRLRT----FP---DISTNISDLNLSRTG-IEE--VPWW 864 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCC-CC---CccccCEEECCCCCcccc----cc---ccccccCEeECCCCC-Ccc--ChHH
Confidence 3466777777777654432110 00 234677777777654332 11 123567777776654 332 2222
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 037505 398 LVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVG 442 (483)
Q Consensus 398 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~ 442 (483)
+..+++|+.|++.+|..++... .-...+++|+.+++++|..++
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcccc
Confidence 3466777777777777665422 122346677777777776654
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=134.83 Aligned_cols=258 Identities=27% Similarity=0.336 Sum_probs=139.7
Q ss_pred CChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCC-CCCCc--HHHHHHHHhhCCCCCeEEeecC
Q 037505 204 SEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRT-CRSIV--DVVLLNLAENCDSLNSLLVYDG 280 (483)
Q Consensus 204 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~--~~~l~~~~~~~~~L~~L~l~~~ 280 (483)
........+...+++|+.|.+.+|..+.+.+.......+ ++|++|++++ +.... ......+...|++|+.|+++.+
T Consensus 175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 253 (482)
T KOG1947|consen 175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKC-PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC 253 (482)
T ss_pred ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhC-chhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence 344445555555677777777766666655433333333 6777777765 22222 2223345556666666666544
Q ss_pred C--ChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccc
Q 037505 281 C--SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINC 358 (483)
Q Consensus 281 ~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 358 (483)
. ++.++......++ +|++|.+.+|..+++.++..++..+++|++|++++|..+++.++..+... +++++.|.+..+
T Consensus 254 ~~isd~~l~~l~~~c~-~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~-c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 254 GLVTDIGLSALASRCP-NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN-CPNLRELKLLSL 331 (482)
T ss_pred hccCchhHHHHHhhCC-CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh-Ccchhhhhhhhc
Confidence 3 4455555555554 66666666665566666666666666666666666666666666655444 345555544433
Q ss_pred cc---ccCcchhHHHHHhcCC-CCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEe
Q 037505 359 DV---VDREPGLLASLGQNLK-QLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVD 434 (483)
Q Consensus 359 ~~---~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~ 434 (483)
.. .... .+.......+ .+..+.+.+|..+++..+.... .......+.+.+|+.++ ..+......+..++.|+
T Consensus 332 ~~c~~l~~~--~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 332 NGCPSLTDL--SLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLN 407 (482)
T ss_pred CCCccHHHH--HHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEe
Confidence 21 1110 0111111121 3444444444444443333322 11111134444555554 44444333344468999
Q ss_pred ccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 435 IMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 435 l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
++.|..+++..+......+.+++.+++.++..-.
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCccccc
Confidence 9999999998888776558888888888854333
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=1.8e-11 Score=106.86 Aligned_cols=237 Identities=19% Similarity=0.201 Sum_probs=130.5
Q ss_pred hHHHHHHHhCCCccEEecCCCCCCCchhHHH-----------HHhhccCCCcEEeCCCCCCC--cHHHHHHHHhhCCCCC
Q 037505 207 TGVGWLWRSCKRLKKLQLKSCSGIGDGGSFA-----------NFVKCSQGLEEVKLRTCRSI--VDVVLLNLAENCDSLN 273 (483)
Q Consensus 207 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~~~~~L~ 273 (483)
.++..+++++..|++|.+.+|. ++..+-.. ......+.|+.+....+..- +...+....+.+|
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~--- 185 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP--- 185 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc---
Confidence 4466677778888888888776 33222110 01112245555555443211 1122222333344
Q ss_pred eEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHH---HHcCCCCcEEEccCCCccChhhHHHHHH--hcCC
Q 037505 274 SLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAV---AVKFRGLSVLRLQSCCLVSGDGLKALGV--AMSS 348 (483)
Q Consensus 274 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~ 348 (483)
.|+.+.+.. +.+...+...+ ..+||+|+.|+|... .++..+-..++. +..+
T Consensus 186 ----------------------~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 186 ----------------------TLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWP 241 (382)
T ss_pred ----------------------ccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccc
Confidence 455555544 33333332222 356888888888763 456666555553 2345
Q ss_pred CCcEEeccccccccCcchh-HHHHHhcCCCCCEEecCCCcCCCHHHHHHHH---hcCCCCCEEEecCCCCC--CHHHHHH
Q 037505 349 GLEELALINCDVVDREPGL-LASLGQNLKQLRKLDLSYNEMLLDKEFMAML---VSCNYLTELKLRGCKGL--TSMAVVS 422 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i--~~~~~~~ 422 (483)
.|++|.+++|...+.+.-. ..++....|+|+.|.+.+|. ++.++...+. ...|.|..|++++|. + .++++..
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~e 319 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDE 319 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHH
Confidence 7888888888877765322 33444567899999999988 6655554433 246899999999987 5 5556666
Q ss_pred HHhcCCC----CCEEeccCCCCCChHHHHHH---HHcCCCCcEEEeeccCCcHHHHHHH
Q 037505 423 MSKSCKR----LQTVDIMHCCRVGAEAVELF---VLNSPQLRRVEVDENKLSDVVRTWA 474 (483)
Q Consensus 423 l~~~~~~----L~~L~l~~c~~i~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~~~~~ 474 (483)
++...+. +...+-+. ..+.+.+-... ......=+.++.+++.+.++.....
T Consensus 320 i~~~~~~~~~~~~~~~~s~-e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 320 IASKFDTAHVLLEDIDDSE-EELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred HHHhcccccccchhhchhH-HHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHh
Confidence 6665422 22222222 22333332222 2234455667888888888755444
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=4.1e-14 Score=132.06 Aligned_cols=103 Identities=22% Similarity=0.169 Sum_probs=49.4
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|..++++. ++++.. ....-..++|+.|++++. .++.-.+. .....+|+.|+++.+.... ++.....+
T Consensus 223 NL~dvDlS~-N~Lp~v--Pecly~l~~LrrLNLS~N-~iteL~~~---~~~W~~lEtLNlSrNQLt~-----LP~avcKL 290 (1255)
T KOG0444|consen 223 NLRDVDLSE-NNLPIV--PECLYKLRNLRRLNLSGN-KITELNMT---EGEWENLETLNLSRNQLTV-----LPDAVCKL 290 (1255)
T ss_pred hhhhccccc-cCCCcc--hHHHhhhhhhheeccCcC-ceeeeecc---HHHHhhhhhhccccchhcc-----chHHHhhh
Confidence 667777765 344321 111233667777777763 34432211 0111266777777766554 33333345
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecC
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRG 411 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 411 (483)
+.|+.|.+.++. ++-+++..=+..+..|+.+...+
T Consensus 291 ~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 291 TKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred HHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhc
Confidence 666666665554 33333332222333444444443
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.30 E-value=3.7e-14 Score=132.32 Aligned_cols=318 Identities=16% Similarity=0.106 Sum_probs=147.2
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccc--cccchhhhccCCCCC
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDAD--EVENEVFRRYGETGL 182 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~ 182 (483)
...++-|.|..+.+. .++.-...|.+|++|.+.+++-. ....++.+|.|+.+.+..|++. +++
T Consensus 31 Mt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP------------ 96 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIP------------ 96 (1255)
T ss_pred hhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCC------------
Confidence 355666666655221 11111224666666666665533 3455666666776666666542 111
Q ss_pred cchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHH
Q 037505 183 CSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVL 262 (483)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 262 (483)
...-.+..|+.|++++|.+.. ...-+...+++-.|+++++. +...+- .+...+..|-.|+++++.. ..+
T Consensus 97 ---~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~-IetIPn--~lfinLtDLLfLDLS~NrL---e~L 165 (1255)
T KOG0444|consen 97 ---TDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNN-IETIPN--SLFINLTDLLFLDLSNNRL---EML 165 (1255)
T ss_pred ---chhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCc-cccCCc--hHHHhhHhHhhhccccchh---hhc
Confidence 111234456777777776532 11122445667777776643 221111 1122224555666665321 122
Q ss_pred HHHHhhCCCCCeEEeecCCCh-hHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHH
Q 037505 263 LNLAENCDSLNSLLVYDGCSR-EGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKA 341 (483)
Q Consensus 263 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 341 (483)
+--..++..|+.|.++++.-. ..+.+.-+ .. .|+.|.+++- .-+...+..-...+.||..++++.. .++.. ...
T Consensus 166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs-mt-sL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~v-Pec 240 (1255)
T KOG0444|consen 166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPS-MT-SLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN-NLPIV-PEC 240 (1255)
T ss_pred CHHHHHHhhhhhhhcCCChhhHHHHhcCcc-ch-hhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc-CCCcc-hHH
Confidence 222334555666666544311 11211111 11 4455555541 1111111111122445555565542 22211 111
Q ss_pred HHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH
Q 037505 342 LGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVV 421 (483)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~ 421 (483)
+. ..++|+.|+++++.+..-.. ....-.+|++|+++.+.. + .+..-...+++|+.|.+.++. ++-+++.
T Consensus 241 ly--~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrNQL-t--~LP~avcKL~kL~kLy~n~Nk-L~FeGiP 309 (1255)
T KOG0444|consen 241 LY--KLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRNQL-T--VLPDAVCKLTKLTKLYANNNK-LTFEGIP 309 (1255)
T ss_pred Hh--hhhhhheeccCcCceeeeec-----cHHHHhhhhhhccccchh-c--cchHHHhhhHHHHHHHhccCc-ccccCCc
Confidence 11 12366666666666544221 111234566666666552 1 122222256677777777654 4444444
Q ss_pred HHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCc
Q 037505 422 SMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 422 ~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
+=+..+.+|+.+..++ +.+. -+..-.-.|+.|+.|.++.|.+-
T Consensus 310 SGIGKL~~Levf~aan-N~LE--lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAAN-NKLE--LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred cchhhhhhhHHHHhhc-cccc--cCchhhhhhHHHHHhccccccee
Confidence 3333355666666665 2221 11111236899999999998654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=6.6e-12 Score=122.66 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=59.6
Q ss_pred cCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh
Q 037505 65 SNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP 144 (483)
Q Consensus 65 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 144 (483)
+++. |+.|+++ ...+.+..+..-. .++|++|+++.|.+.... ... ..+++|+++.+..+..
T Consensus 43 ~~v~-L~~l~ls--------------nn~~~~fp~~it~--l~~L~~ln~s~n~i~~vp-~s~-~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 43 KRVK-LKSLDLS--------------NNQISSFPIQITL--LSHLRQLNLSRNYIRSVP-SSC-SNMRNLQYLNLKNNRL 103 (1081)
T ss_pred heee-eEEeecc--------------ccccccCCchhhh--HHHHhhcccchhhHhhCc-hhh-hhhhcchhheeccchh
Confidence 3555 9999998 5555444333222 377999999988443322 222 2578999999988774
Q ss_pred h-HHHHHhcCCCcceEecccccccccc
Q 037505 145 L-YFNWVASFSCLKELSVYACDADEVE 170 (483)
Q Consensus 145 ~-~~~~l~~~~~L~~L~l~~~~~~~~~ 170 (483)
. .+..+..+.+|+.|++++|....++
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~f~~~P 130 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNHFGPIP 130 (1081)
T ss_pred hcCchhHHhhhcccccccchhccCCCc
Confidence 4 6677888899999999999875444
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.2e-11 Score=108.33 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=119.5
Q ss_pred hhHHHHHhc---CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hh--HHHHHhcCCCcceEeccccccccc
Q 037505 97 RLLFVVSSS---CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PL--YFNWVASFSCLKELSVYACDADEV 169 (483)
Q Consensus 97 ~~l~~l~~~---~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~--~~~~l~~~~~L~~L~l~~~~~~~~ 169 (483)
-.+..+++. +.+|+++.|.++.+...+....++.|++++.|+++.+- .. ....+..+|+|+.|+++.|.+...
T Consensus 108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred ecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence 344444432 67899999999888887777888899999999998753 11 345567999999999999876311
Q ss_pred cchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEE
Q 037505 170 ENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEV 249 (483)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 249 (483)
.....-..+++|+.|.+++|.+++..+..+...+|+|+.|.+.++..+.... .-..-++.|++|
T Consensus 188 -------------~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~L~~L 251 (505)
T KOG3207|consen 188 -------------ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA---TSTKILQTLQEL 251 (505)
T ss_pred -------------ccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec---chhhhhhHHhhc
Confidence 1111123678999999999999999999999999999999998864332211 112333689999
Q ss_pred eCCCCCCCcHHHHHHHHhhCCCCCeEEeecC
Q 037505 250 KLRTCRSIVDVVLLNLAENCDSLNSLLVYDG 280 (483)
Q Consensus 250 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 280 (483)
+|++...++...+..... +|.|+.|+++.+
T Consensus 252 dLs~N~li~~~~~~~~~~-l~~L~~Lnls~t 281 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKVGT-LPGLNQLNLSST 281 (505)
T ss_pred cccCCccccccccccccc-ccchhhhhcccc
Confidence 999877665444444333 677777777644
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=4.7e-12 Score=123.65 Aligned_cols=154 Identities=23% Similarity=0.262 Sum_probs=100.7
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCC--CccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHh
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSC--CLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQ 373 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 373 (483)
.|+.|.+.+ +.+++..+..+ ..+++|+.|++++. ..+++..+..+ +.|++|.++++.... ++....
T Consensus 360 ~Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kl-----e~LeeL~LSGNkL~~-----Lp~tva 427 (1081)
T KOG0618|consen 360 ALQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKL-----EELEELNLSGNKLTT-----LPDTVA 427 (1081)
T ss_pred HHHHHHHhc-Ccccccchhhh-ccccceeeeeecccccccCCHHHHhch-----HHhHHHhcccchhhh-----hhHHHH
Confidence 566777776 67777777655 45889999999885 22333333333 488999999998776 444455
Q ss_pred cCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcC
Q 037505 374 NLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNS 453 (483)
Q Consensus 374 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 453 (483)
+++.|++|...+|.... +..+. +++.|+.+|++.+ .++...+..... .++|++||+++.++. ...-..+ ..+
T Consensus 428 ~~~~L~tL~ahsN~l~~---fPe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN~~l-~~d~~~l-~~l 499 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLS---FPELA-QLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGNTRL-VFDHKTL-KVL 499 (1081)
T ss_pred hhhhhHHHhhcCCceee---chhhh-hcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCCccc-ccchhhh-HHh
Confidence 78899999888776322 23333 7889999999965 477666655433 279999999997752 1112222 245
Q ss_pred CCCcEEEeeccCCcHH
Q 037505 454 PQLRRVEVDENKLSDV 469 (483)
Q Consensus 454 ~~L~~L~l~~~~i~~~ 469 (483)
.++...+++-++.++.
T Consensus 500 ~~l~~~~i~~~~~~d~ 515 (1081)
T KOG0618|consen 500 KSLSQMDITLNNTPDG 515 (1081)
T ss_pred hhhhheecccCCCCcc
Confidence 6666666665655544
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.5e-11 Score=106.83 Aligned_cols=208 Identities=19% Similarity=0.225 Sum_probs=120.5
Q ss_pred HhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCC----hhHHHHH
Q 037505 214 RSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCS----REGLLQF 289 (483)
Q Consensus 214 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~~ 289 (483)
+.+.+|+.+.+.++. +...+.. .....+++++.|++++.-......+..+++.+|+|+.|+++.+.. .......
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 344556666665543 3333222 223344677777776644444556667777777777777764431 1111111
Q ss_pred HHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHH
Q 037505 290 ISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLA 369 (483)
Q Consensus 290 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (483)
+ +.|+.|.+++| +++...+..+...||+|+.|.+.+...+ .........+..|++|+|+++...+... .
T Consensus 196 l----~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~---~~~~~~~~i~~~L~~LdLs~N~li~~~~---~ 264 (505)
T KOG3207|consen 196 L----SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEII---LIKATSTKILQTLQELDLSNNNLIDFDQ---G 264 (505)
T ss_pred h----hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccc---ceecchhhhhhHHhhccccCCccccccc---c
Confidence 1 26888888886 6677777778888999999998875322 1222222223488899999888776542 1
Q ss_pred HHHhcCCCCCEEecCCCcCCCHHHH-----HHHHhcCCCCCEEEecCCCCCCH-HHHHHHHhcCCCCCEEeccC
Q 037505 370 SLGQNLKQLRKLDLSYNEMLLDKEF-----MAMLVSCNYLTELKLRGCKGLTS-MAVVSMSKSCKRLQTVDIMH 437 (483)
Q Consensus 370 ~~~~~~~~L~~L~L~~~~~~~~~~~-----~~l~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~ 437 (483)
.....+|.|..|.++.|. +.+-.. ......+|+|++|++..++ +.+ ..+..+ ..+++|+.|.+..
T Consensus 265 ~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l-~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHL-RTLENLKHLRITL 335 (505)
T ss_pred cccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc-cccccccchh-hccchhhhhhccc
Confidence 223467888888888776 333221 1223467888888888766 322 222222 2256666666543
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=102.10 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=95.1
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|++|+++|...+...+..+++..+|.|++|.+.+-. +..+.+..+.. .+|+|..|+|+++.... +. ....+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~-sFpNL~sLDIS~TnI~n-----l~-GIS~L 194 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCA-SFPNLRSLDISGTNISN-----LS-GISRL 194 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhh-ccCccceeecCCCCccC-----cH-HHhcc
Confidence 6777777776666667777777777777777777743 33333444442 34577777777776655 22 23356
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHh---cCCCCCEEeccCCCCCChHHHHHHHH
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSM-AVVSMSK---SCKRLQTVDIMHCCRVGAEAVELFVL 451 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~ 451 (483)
++|+.|.+.+-...+...+..++ ++++|+.||++.-...++. .+....+ .+|+|+-||.++ +.+++..++.+.+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~ 272 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLN 272 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHH
Confidence 77777777666644445556666 6777777777765443333 1221121 357777777776 5667777777766
Q ss_pred cCCCCcEEE
Q 037505 452 NSPQLRRVE 460 (483)
Q Consensus 452 ~~~~L~~L~ 460 (483)
.-|+|+.+.
T Consensus 273 sH~~L~~i~ 281 (699)
T KOG3665|consen 273 SHPNLQQIA 281 (699)
T ss_pred hCccHhhhh
Confidence 666665554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=2.4e-09 Score=107.54 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=10.2
Q ss_pred cCCCCcEEEeeccCCcHH
Q 037505 452 NSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 452 ~~~~L~~L~l~~~~i~~~ 469 (483)
.+++|+.|++++|++++.
T Consensus 443 ~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 443 HLSSETTVNLEGNPLSER 460 (788)
T ss_pred hccCCCeEECCCCCCCch
Confidence 455555566666555544
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=1.2e-09 Score=68.65 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
+.||+|++.+||+||+.. |+.++++|||+|+++...
T Consensus 2 ~~LP~Eil~~If~~L~~~---dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPR---DLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCS-HHHHHHHHTTS-HH---HHHHHTTSSHHHHHHHTC
T ss_pred hHhHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHCC
Confidence 579999999999999999 999999999999999754
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.68 E-value=9.5e-08 Score=96.27 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=7.1
Q ss_pred cCCCCCEEEecCCC
Q 037505 400 SCNYLTELKLRGCK 413 (483)
Q Consensus 400 ~~~~L~~L~l~~~~ 413 (483)
.+++|+.|++++++
T Consensus 443 ~L~~L~~LdLs~N~ 456 (788)
T PRK15387 443 HLSSETTVNLEGNP 456 (788)
T ss_pred hccCCCeEECCCCC
Confidence 34455555555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=7.2e-09 Score=84.86 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=8.3
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEecccccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
.++++|+|.++.++.. ..+...+.+|+.|+++++.-...+.+..+++|++|++.+|.+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS--
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCC
Confidence 3456666666644321 122212344455554444322223333344444444444433
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=8.9e-07 Score=75.27 Aligned_cols=255 Identities=20% Similarity=0.153 Sum_probs=147.5
Q ss_pred cCCCceEEEccCCcCChhHHHHHHHhCCC---ccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 190 TVLGLESLCLSGIRSEDTGVGWLWRSCKR---LKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
.+..+++++++||.++....+.+.....+ |+..+++... +.. ...-+. . .-..+....
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr-~kde~~---~-------------~L~~Ll~aL 88 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGR-DKDELY---S-------------NLVMLLKAL 88 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcc-cHHHHH---H-------------HHHHHHHHH
Confidence 45678899999999888777776665554 4444443311 000 000000 0 001112222
Q ss_pred hhCCCCCeEEeecCC----ChhHHHHHHHhccccccEeeccCCCCCCH---HH----HHHH-----HHcCCCCcEEEccC
Q 037505 267 ENCDSLNSLLVYDGC----SREGLLQFISHCRCNLQKLDLRLPLDLNN---VH----LSAV-----AVKFRGLSVLRLQS 330 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~~----~~~l-----~~~~~~L~~L~l~~ 330 (483)
-.||+|+..+++++. ..+.+..+++... .|++|.+++| .+.. .. +..+ +..-|.|+++....
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCC-CceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 346666666666543 3445566666665 6778877764 3322 11 1111 13367888887765
Q ss_pred CCccChhh---HHHHHHhcCCCCcEEeccccccccCcchhHHH-HHhcCCCCCEEecCCCcCCCHHHHHHHH---hcCCC
Q 037505 331 CCLVSGDG---LKALGVAMSSGLEELALINCDVVDREPGLLAS-LGQNLKQLRKLDLSYNEMLLDKEFMAML---VSCNY 403 (483)
Q Consensus 331 ~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~ 403 (483)
. .+.... +....... ..|+.+.+..+.+...+...+.. -...+.+|+.|+|..|. ++..+-..++ ...+.
T Consensus 167 N-Rlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 N-RLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNL 243 (388)
T ss_pred c-hhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccch
Confidence 3 333222 22222212 48999999988887765333333 24578999999999887 4544433333 34567
Q ss_pred CCEEEecCCCCCCHHHHHHHHhc-----CCCCCEEeccCCCC----CChHHHHHHH-HcCCCCcEEEeeccCCcHH
Q 037505 404 LTELKLRGCKGLTSMAVVSMSKS-----CKRLQTVDIMHCCR----VGAEAVELFV-LNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 404 L~~L~l~~~~~i~~~~~~~l~~~-----~~~L~~L~l~~c~~----i~~~~~~~l~-~~~~~L~~L~l~~~~i~~~ 469 (483)
|+.|.+++|. ++..+...+++. .|+|..|...+... |-+.....+. ..+|-|..|.+.||.+++.
T Consensus 244 lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 244 LRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 8999999997 666666655543 48888888887432 1222233332 3578888888889999886
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.57 E-value=1.8e-09 Score=96.27 Aligned_cols=140 Identities=13% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch-hhHHHHHhcCCCcceEeccccccccccc--------hhhhcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR-PLYFNWVASFSCLKELSVYACDADEVEN--------EVFRRY 177 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------~~~~~~ 177 (483)
.++..+++.++.+.......+. ++.|++|+...+- ...+..++.+.+|+.|.+..|.+...+. |.+.+.
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc
Confidence 4455566666644332222222 5566666654433 2245667777777777777777654430 111111
Q ss_pred CCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 178 GETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 178 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
-+-..-..+..+.++++..|++..|.+..-.-+ +..+.+|++|+++++. ++..+ .-.+.+ +|+.|.+.|.+
T Consensus 238 N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~-is~Lp---~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 238 NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNND-ISSLP---YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cHHHhhHHHHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCc-cccCC---cccccc-eeeehhhcCCc
Confidence 111111223345677788888888776432221 2346678888887654 33221 223333 66777776654
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.53 E-value=3.1e-07 Score=92.12 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccc
Q 037505 91 NPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYA 163 (483)
Q Consensus 91 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~ 163 (483)
...+...|...++..+|.|++|.+.+-.+....+..+..++|+|..|+++++.-....+++.+++|+.|.+++
T Consensus 132 ~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 132 SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRN 204 (699)
T ss_pred cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccC
Confidence 4444444555555555555555555544433444445555555555555554433334445555555555443
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=1.9e-06 Score=73.35 Aligned_cols=247 Identities=18% Similarity=0.163 Sum_probs=133.1
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCC---cCcEEeccCch------------hhHHHHHhcCCCcceEecccccccccc
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACN---HLTSLTVSLSR------------PLYFNWVASFSCLKELSVYACDADEVE 170 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~---~L~~L~l~~~~------------~~~~~~l~~~~~L~~L~l~~~~~~~~~ 170 (483)
...+.+++|++|.+....+..++.... +|+..++++.. .+..+.+.+||+|+..++++|.+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg--- 105 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG--- 105 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC---
Confidence 577888999999888888777776544 55555554422 013456778888888888887551
Q ss_pred chhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchh---HHHHH--------
Q 037505 171 NEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGG---SFANF-------- 239 (483)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~-------- 239 (483)
.. ....+..++++...|++|.+++|. ++..+ +...+
T Consensus 106 -----------~~---------------------~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKK 152 (388)
T COG5238 106 -----------SE---------------------FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKK 152 (388)
T ss_pred -----------cc---------------------cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhh
Confidence 11 123355556666677777776654 22111 00000
Q ss_pred hhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHH--
Q 037505 240 VKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVA-- 317 (483)
Q Consensus 240 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-- 317 (483)
...-|.|+.+....++.- +.+...+...+... .+|+.+.+.. +.+..+++..++
T Consensus 153 aa~kp~Le~vicgrNRle----------------------ngs~~~~a~~l~sh-~~lk~vki~q-NgIrpegv~~L~~~ 208 (388)
T COG5238 153 AADKPKLEVVICGRNRLE----------------------NGSKELSAALLESH-ENLKEVKIQQ-NGIRPEGVTMLAFL 208 (388)
T ss_pred hccCCCceEEEeccchhc----------------------cCcHHHHHHHHHhh-cCceeEEeee-cCcCcchhHHHHHH
Confidence 011134444443322100 11122222222222 2566666665 456555544432
Q ss_pred --HcCCCCcEEEccCCCccChhhHHHHHHh--cCCCCcEEeccccccccCcchhH-HHH-HhcCCCCCEEecCCCcC---
Q 037505 318 --VKFRGLSVLRLQSCCLVSGDGLKALGVA--MSSGLEELALINCDVVDREPGLL-ASL-GQNLKQLRKLDLSYNEM--- 388 (483)
Q Consensus 318 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-~~~-~~~~~~L~~L~L~~~~~--- 388 (483)
..+.+|+.|++.. +.++..+-..++.. ..+.|++|.+.+|-....+...+ ... -...|+|..|...++..
T Consensus 209 gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 209 GLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 4578888888876 34566666555532 33467888888887766653211 111 23467777777776642
Q ss_pred -CCHHHHHHHH-hcCCCCCEEEecCCC
Q 037505 389 -LLDKEFMAML-VSCNYLTELKLRGCK 413 (483)
Q Consensus 389 -~~~~~~~~l~-~~~~~L~~L~l~~~~ 413 (483)
+-+..+..+. .+.|-|..|.++|+.
T Consensus 288 ~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 288 IILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred eeeeechhhhhhcccHHHHHHHHccCc
Confidence 1122222222 246677777777654
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.5e-07 Score=80.99 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=85.8
Q ss_pred cccCCCceEEEccCCcCC-hhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 188 IDTVLGLESLCLSGIRSE-DTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
......++.|++.+|.++ ++.+..++.++|.|+.|+++.+...++.+..+ ....+|+.|.+.+ +.++........
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l 142 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSL 142 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhh
Confidence 355667888888888874 67788899999999999997654333222111 2336899999987 567788888888
Q ss_pred hhCCCCCeEEeecCCChhHH--HHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCC
Q 037505 267 ENCDSLNSLLVYDGCSREGL--LQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSC 331 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 331 (483)
..+|.+++|+++.+.-..-. ....+...+.+.+|....|..........+.+.+||+..+.+..|
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 89999999988755200000 000000111344455544433333334444555666666655544
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.44 E-value=1e-06 Score=89.35 Aligned_cols=106 Identities=21% Similarity=0.194 Sum_probs=57.7
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
++|+.|.+++|...... . ...++|+.|++++|. ++. +..- -.++|+.|++++|. ++... ..+ .
T Consensus 325 ~sL~~L~Ls~N~Lt~LP-----~--~l~~sL~~L~Ls~N~-L~~--LP~~--lp~~L~~LdLs~N~-Lt~LP-~~l---~ 387 (754)
T PRK15370 325 PGLKTLEAGENALTSLP-----A--SLPPELQVLDVSKNQ-ITV--LPET--LPPTITTLDVSRNA-LTNLP-ENL---P 387 (754)
T ss_pred ccceeccccCCccccCC-----h--hhcCcccEEECCCCC-CCc--CChh--hcCCcCEEECCCCc-CCCCC-HhH---H
Confidence 47777777776654321 1 113577777777775 331 1111 12477777777765 33211 111 1
Q ss_pred CCCCEEeccCCCCCCh--HHHHHHHHcCCCCcEEEeeccCCcHHHH
Q 037505 428 KRLQTVDIMHCCRVGA--EAVELFVLNSPQLRRVEVDENKLSDVVR 471 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~--~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 471 (483)
+.|+.|++++|. ++. ..+..+...++++..|++.+|.++....
T Consensus 388 ~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 388 AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHH
Confidence 256777777743 332 2234444456777788888887776543
No 34
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=2.5e-07 Score=79.58 Aligned_cols=212 Identities=12% Similarity=0.038 Sum_probs=118.2
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCC
Q 037505 244 QGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGL 323 (483)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 323 (483)
+.++++++.++.-.....+..+...+|.|+.|+++.+.-...+...- ....+|+.|-+.+ +.++...........|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcC-CCCChhhhhhhhhcchhh
Confidence 45555555554333344455555555666666554332221111111 0112777887777 677777777777777778
Q ss_pred cEEEccCCC----ccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 324 SVLRLQSCC----LVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 324 ~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+.|.++... +++++..+.. .+.++.|...+|....-. -...+.+.+|++..+.++.|+ +.+..-..-++
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~--~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se 221 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWL--NKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSE 221 (418)
T ss_pred hhhhhccchhhhhcccccccccc----chhhhhhhcCCcHHHHHH--HHHhHHhhcccchheeeecCc-ccchhhcccCC
Confidence 877776531 1222222221 125556666666532211 133456779999999999887 44444444455
Q ss_pred cCCCCCEEEecCCCCCCH-HHHHHHHhcCCCCCEEeccCCCCCChHH-----HHHHHHcCCCCcEEEeeccCCcHH
Q 037505 400 SCNYLTELKLRGCKGLTS-MAVVSMSKSCKRLQTVDIMHCCRVGAEA-----VELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 400 ~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~L~~L~l~~c~~i~~~~-----~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
.+|.+-.|+++... +++ .++..+ .+.+.|..|++++.+- .+.- ..-++..+++++.|+ |.+|+.+
T Consensus 222 ~~p~~~~LnL~~~~-idswasvD~L-n~f~~l~dlRv~~~Pl-~d~l~~~err~llIaRL~~v~vLN--GskIss~ 292 (418)
T KOG2982|consen 222 PFPSLSCLNLGANN-IDSWASVDAL-NGFPQLVDLRVSENPL-SDPLRGGERRFLLIARLTKVQVLN--GSKISSR 292 (418)
T ss_pred CCCcchhhhhcccc-cccHHHHHHH-cCCchhheeeccCCcc-cccccCCcceEEEEeeccceEEec--Ccccchh
Confidence 77888888888755 443 344443 4589999999998664 3211 011123466666665 4566654
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=1.6e-06 Score=88.02 Aligned_cols=255 Identities=13% Similarity=0.060 Sum_probs=144.7
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
.+...|+++++.++.... .+ .++|+.|+++++.-. .+..+ +++|++|++.+|.+..++
T Consensus 178 ~~~~~L~L~~~~LtsLP~-~I---p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~LtsLP--------------- 236 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-CI---PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTSIP--------------- 236 (754)
T ss_pred cCceEEEeCCCCcCcCCc-cc---ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCccccCC---------------
Confidence 567889988875542111 01 247899999876522 22222 358999999988763332
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
.....+|+.|++++|.+.. +... ...+|+.|+++++. +...+. ...++|+.|+++++. +.. ++..
T Consensus 237 --~~l~~~L~~L~Ls~N~L~~--LP~~--l~s~L~~L~Ls~N~-L~~LP~-----~l~~sL~~L~Ls~N~-Lt~--LP~~ 301 (754)
T PRK15370 237 --ATLPDTIQEMELSINRITE--LPER--LPSALQSLDLFHNK-ISCLPE-----NLPEELRYLSVYDNS-IRT--LPAH 301 (754)
T ss_pred --hhhhccccEEECcCCccCc--CChh--HhCCCCEEECcCCc-cCcccc-----ccCCCCcEEECCCCc-ccc--Cccc
Confidence 0123478999999988653 1111 12478999997653 432211 112589999998764 221 1110
Q ss_pred HhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh
Q 037505 266 AENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA 345 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 345 (483)
..++|+.|+++++.... +. ...+++|+.|+++++ .++... . ..+++|+.|+++++. ++... ..
T Consensus 302 --lp~sL~~L~Ls~N~Lt~-LP---~~l~~sL~~L~Ls~N-~Lt~LP-~---~l~~sL~~L~Ls~N~-L~~LP-~~---- 364 (754)
T PRK15370 302 --LPSGITHLNVQSNSLTA-LP---ETLPPGLKTLEAGEN-ALTSLP-A---SLPPELQVLDVSKNQ-ITVLP-ET---- 364 (754)
T ss_pred --chhhHHHHHhcCCcccc-CC---ccccccceeccccCC-ccccCC-h---hhcCcccEEECCCCC-CCcCC-hh----
Confidence 11356667666543211 11 111237888888874 333211 0 114689999998863 43211 11
Q ss_pred cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCH--HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 037505 346 MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLD--KEFMAMLVSCNYLTELKLRGCKGLTSMAVVSM 423 (483)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 423 (483)
.+++|+.|++++|....... .+ .+.|+.|++++|. ++. ..+..+...++++..|++.+++ ++...+..+
T Consensus 365 lp~~L~~LdLs~N~Lt~LP~----~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 365 LPPTITTLDVSRNALTNLPE----NL---PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred hcCCcCEEECCCCcCCCCCH----hH---HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC-ccHHHHHHH
Confidence 13489999999887654321 11 1357788888876 331 2344445566888899998877 665555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=4.4e-07 Score=74.43 Aligned_cols=130 Identities=17% Similarity=0.089 Sum_probs=46.3
Q ss_pred hCCcCcEEeccCchhhHHHHHh-cCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 130 ACNHLTSLTVSLSRPLYFNWVA-SFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 130 ~~~~L~~L~l~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
++.++++|++.++.-...+.++ .+.+|+.|++++|.+..++ ....++.|+.|++++|.++.-+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~----------------~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE----------------GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T----------------T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc----------------CccChhhhhhcccCCCCCCccc
Confidence 3447889999887644445565 5788999999999874433 1245788999999999886532
Q ss_pred HHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHH-HHHHhhCCCCCeEEee
Q 037505 209 VGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVL-LNLAENCDSLNSLLVY 278 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~ 278 (483)
..+...+|+|+.|.++++. +.+......+ ..+++|+.|++.+++....... ..+...+|+|+.|+-.
T Consensus 81 -~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 -EGLDKNLPNLQELYLSNNK-ISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HHHHHH-TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -cchHHhCCcCCEEECcCCc-CCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 1233568999999998754 3332222222 3458899999988764333222 2445567777777654
No 37
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.34 E-value=2.1e-07 Score=56.62 Aligned_cols=34 Identities=44% Similarity=0.721 Sum_probs=31.9
Q ss_pred chHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 5 LCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 5 LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
||+|++.+||.||+.. |+.++++|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~---d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPK---DLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhcC
Confidence 7999999999999999 999999999999999654
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=6.1e-07 Score=72.97 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCK 428 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 428 (483)
.++.++-+++.+...+ +..+ ..++.++.|.+.+|..+.|.++..+..-.|+|+.|++++|+.||+.++..+.+ ++
T Consensus 102 ~IeaVDAsds~I~~eG---le~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG---LEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHH---HHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hh
Confidence 4566666666655543 4443 36888999999999999999999988888899999999999999999887765 89
Q ss_pred CCCEEeccCCCCCChHH--HHHHHHcCCCCcEE
Q 037505 429 RLQTVDIMHCCRVGAEA--VELFVLNSPQLRRV 459 (483)
Q Consensus 429 ~L~~L~l~~c~~i~~~~--~~~l~~~~~~L~~L 459 (483)
+|+.|++++-+.+.... ...+-+.+|+++.+
T Consensus 177 nLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred hhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 99999999866554322 33444568877654
No 39
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.29 E-value=1.6e-07 Score=59.41 Aligned_cols=37 Identities=43% Similarity=0.610 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRAS 42 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~ 42 (483)
..||+|++.+||+||+.. |+.++++|||+|+++....
T Consensus 4 ~~LP~~il~~Il~~l~~~---~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPK---DLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHS-HHHHHHHHHTS-HH---HHHHHCTT-HHHHHHHTTH
T ss_pred HHCCHHHHHHHHHHCcHH---HHHHHHHHhhHHHHHHcCC
Confidence 479999999999999999 9999999999999996543
No 40
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.25 E-value=3.4e-07 Score=82.08 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=9.6
Q ss_pred CceEEEccCCcC
Q 037505 193 GLESLCLSGIRS 204 (483)
Q Consensus 193 ~L~~L~l~~~~~ 204 (483)
+|+.|.+-||++
T Consensus 298 hL~~L~leGNPl 309 (565)
T KOG0472|consen 298 HLKFLALEGNPL 309 (565)
T ss_pred eeeehhhcCCch
Confidence 788888888875
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.24 E-value=6.8e-08 Score=86.20 Aligned_cols=93 Identities=20% Similarity=0.078 Sum_probs=60.4
Q ss_pred HHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHH
Q 037505 315 AVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEF 394 (483)
Q Consensus 315 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~ 394 (483)
.-...+|+|++|++++. .++...-..+. ....+++|.+..+..... -..+++++.+|+.|+|.++. |+-...
T Consensus 268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v----~~~~f~~ls~L~tL~L~~N~-it~~~~ 339 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNN-KITRIEDGAFE--GAAELQELYLTRNKLEFV----SSGMFQGLSGLKTLSLYDNQ-ITTVAP 339 (498)
T ss_pred HHHhhcccceEeccCCC-ccchhhhhhhc--chhhhhhhhcCcchHHHH----HHHhhhccccceeeeecCCe-eEEEec
Confidence 33567899999999984 45543332322 122889999988876554 23356788899999999887 443222
Q ss_pred HHHHhcCCCCCEEEecCCCCCC
Q 037505 395 MAMLVSCNYLTELKLRGCKGLT 416 (483)
Q Consensus 395 ~~l~~~~~~L~~L~l~~~~~i~ 416 (483)
.+ ++...+|..|.+-.++..-
T Consensus 340 ~a-F~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 340 GA-FQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred cc-ccccceeeeeehccCcccC
Confidence 22 2356688888887666443
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.21 E-value=1.5e-07 Score=84.02 Aligned_cols=89 Identities=26% Similarity=0.234 Sum_probs=53.2
Q ss_pred HhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHH
Q 037505 372 GQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVL 451 (483)
Q Consensus 372 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~ 451 (483)
++.+|+|++|+|+++. ++...-.+ ++...+++.|.+..+. +... -..+++++.+|+.|++++ ++|+-.+...+ +
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~a-Fe~~a~l~eL~L~~N~-l~~v-~~~~f~~ls~L~tL~L~~-N~it~~~~~aF-~ 343 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGA-FEGAAELQELYLTRNK-LEFV-SSGMFQGLSGLKTLSLYD-NQITTVAPGAF-Q 343 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhh-hcchhhhhhhhcCcch-HHHH-HHHhhhccccceeeeecC-CeeEEEecccc-c
Confidence 5567888888888776 44432222 2355678888887754 3221 233455677888888887 55654333222 3
Q ss_pred cCCCCcEEEeeccCC
Q 037505 452 NSPQLRRVEVDENKL 466 (483)
Q Consensus 452 ~~~~L~~L~l~~~~i 466 (483)
.+.+|.+|++-+|..
T Consensus 344 ~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPF 358 (498)
T ss_pred ccceeeeeehccCcc
Confidence 566777777666533
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=9.9e-07 Score=71.76 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=73.7
Q ss_pred CCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCc
Q 037505 378 LRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLR 457 (483)
Q Consensus 378 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~ 457 (483)
++.++-+++. |..+++..+- .+++++.|.+.+|..+.|.++..+....++|+.|+|++|+.||+.++..+. .+++|+
T Consensus 103 IeaVDAsds~-I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCCch-HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 5667776665 7888888765 899999999999999999999999888899999999999999999998886 799999
Q ss_pred EEEeecc
Q 037505 458 RVEVDEN 464 (483)
Q Consensus 458 ~L~l~~~ 464 (483)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988763
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=4.1e-06 Score=72.37 Aligned_cols=171 Identities=16% Similarity=0.066 Sum_probs=98.6
Q ss_pred hHHHHHhcCCCCceEEccCC--ccchhH-----HHHHHHhCCcCcEEeccCchhhHH-HHHhcCCCcceEeccccccccc
Q 037505 98 LLFVVSSSCSNLKHLRFSAG--PVSVSS-----LLSLSEACNHLTSLTVSLSRPLYF-NWVASFSCLKELSVYACDADEV 169 (483)
Q Consensus 98 ~l~~l~~~~~~L~~L~l~~~--~~~~~~-----l~~l~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~ 169 (483)
.+.++...|..|..|.+++. ++.... +.--...+++|+.+.++.|..... .....-|.|+++.+.+......
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~ 252 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDV 252 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccc
Confidence 45566677889999998875 333222 221223467899999988875422 2233557888888887765322
Q ss_pred cc-----hhhhccCCCC----CcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHh
Q 037505 170 EN-----EVFRRYGETG----LCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFV 240 (483)
Q Consensus 170 ~~-----~~~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 240 (483)
+- -++..+...+ -...........|+++++++|.++. +..-.+-.|.++.|+++.+....... .
T Consensus 253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n-----L 325 (490)
T KOG1259|consen 253 PSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQN-----L 325 (490)
T ss_pred ccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehh-----h
Confidence 21 0111111111 1112223455679999999998753 33445678999999998865332222 2
Q ss_pred hccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEee
Q 037505 241 KCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVY 278 (483)
Q Consensus 241 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 278 (483)
..+++|++|+++++.. ..+..+...+.+++.|.++
T Consensus 326 a~L~~L~~LDLS~N~L---s~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLL---AECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhcccceEeecccchh---HhhhhhHhhhcCEeeeehh
Confidence 2337899999987531 2233333445555555554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.01 E-value=2.3e-06 Score=88.29 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=29.7
Q ss_pred CCCCceEEccCCcc-chhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEecccccc
Q 037505 106 CSNLKHLRFSAGPV-SVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 106 ~~~L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~ 166 (483)
+|+|++|-+..+.. -...-..++..+|.|+.|++++|... .+..|+.+-+|++|+++++.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence 45555555555421 11111222334556666666654432 455555566666666655544
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.90 E-value=3.5e-06 Score=72.80 Aligned_cols=232 Identities=18% Similarity=0.193 Sum_probs=116.9
Q ss_pred HHHHHHHhCCCccEEecCCCCCC-Cch----hHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCC
Q 037505 208 GVGWLWRSCKRLKKLQLKSCSGI-GDG----GSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCS 282 (483)
Q Consensus 208 ~l~~~~~~~~~L~~L~l~~~~~~-~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 282 (483)
.+..++..+.+|+.|..+....- +.. ...++-...+++|+.+.++.|. ...+..+.-.-|.|..+.+.....
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~ 249 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTI 249 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecccc
Confidence 36666777888888888764321 111 1112223345678888887764 223333333345666666543221
Q ss_pred h--hHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccc
Q 037505 283 R--EGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDV 360 (483)
Q Consensus 283 ~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (483)
. ..+...- .+....-.. .......+.......+-|+.+++++. .++...- . ....|+++.|+++++.+
T Consensus 250 ~~~~~l~pe~-----~~~D~~~~E-~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDE-S--vKL~Pkir~L~lS~N~i 319 (490)
T KOG1259|consen 250 QDVPSLLPET-----ILADPSGSE-PSTSNGSALVSADTWQELTELDLSGN-LITQIDE-S--VKLAPKLRRLILSQNRI 319 (490)
T ss_pred cccccccchh-----hhcCccCCC-CCccCCceEEecchHhhhhhcccccc-chhhhhh-h--hhhccceeEEeccccce
Confidence 0 0000000 011111100 00111111111122445777777763 2322111 1 12345888888888877
Q ss_pred ccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 037505 361 VDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCR 440 (483)
Q Consensus 361 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~ 440 (483)
...+ . .+.+++|+.|+|++|.. +. +...-..+.+.+.|.+.++. +. .+..+.+ +=+|..||+++ ++
T Consensus 320 ~~v~-----n-La~L~~L~~LDLS~N~L-s~--~~Gwh~KLGNIKtL~La~N~-iE--~LSGL~K-LYSLvnLDl~~-N~ 385 (490)
T KOG1259|consen 320 RTVQ-----N-LAELPQLQLLDLSGNLL-AE--CVGWHLKLGNIKTLKLAQNK-IE--TLSGLRK-LYSLVNLDLSS-NQ 385 (490)
T ss_pred eeeh-----h-hhhcccceEeecccchh-Hh--hhhhHhhhcCEeeeehhhhh-Hh--hhhhhHh-hhhheeccccc-cc
Confidence 6632 2 34678888888888762 22 23333356788888888764 22 1222222 44677888887 44
Q ss_pred CCh-HHHHHHHHcCCCCcEEEeeccCCc
Q 037505 441 VGA-EAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 441 i~~-~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
|.. +.+..+. ++|.|+.+.+.+|.++
T Consensus 386 Ie~ldeV~~IG-~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 386 IEELDEVNHIG-NLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence 433 2233333 6888888888887544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=2.1e-05 Score=76.39 Aligned_cols=217 Identities=19% Similarity=0.177 Sum_probs=116.2
Q ss_pred hHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHH
Q 037505 207 TGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGL 286 (483)
Q Consensus 207 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 286 (483)
..+..+...+++++.|.+-..+.-...+ +.-...+..|++|.+.+|+.....++..+-..+.+|- = ..+...+
T Consensus 74 ~qLq~i~d~lqkt~~lkl~~~pa~~pt~--pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LI---C--~~Sl~Al 146 (1096)
T KOG1859|consen 74 EQLQRILDFLQKTKVLKLLPSPARDPTE--PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLI---C--HNSLDAL 146 (1096)
T ss_pred HHHHHHHHHHhhheeeeecccCCCCCCC--CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhh---h--hccHHHH
Confidence 3455566667777777775533222111 1112233789999999887555555555444322221 0 0133344
Q ss_pred HHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCcc--ChhhHHHHHHhcCCCCcEEeccccccccCc
Q 037505 287 LQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLV--SGDGLKALGVAMSSGLEELALINCDVVDRE 364 (483)
Q Consensus 287 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 364 (483)
...+..|.. +++ +...+. .|...+.+. +.+ -|+.++.+ |.++.|++++|....
T Consensus 147 ~~v~ascgg-----d~~--ns~~Wn----------~L~~a~fsy-N~L~~mD~SLqll-----~ale~LnLshNk~~~-- 201 (1096)
T KOG1859|consen 147 RHVFASCGG-----DIS--NSPVWN----------KLATASFSY-NRLVLMDESLQLL-----PALESLNLSHNKFTK-- 201 (1096)
T ss_pred HHHHHHhcc-----ccc--cchhhh----------hHhhhhcch-hhHHhHHHHHHHH-----HHhhhhccchhhhhh--
Confidence 444444431 000 111111 122222222 211 22233333 388899999888765
Q ss_pred chhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh-cCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh
Q 037505 365 PGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV-SCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGA 443 (483)
Q Consensus 365 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 443 (483)
.. ..+.|+.|++|+|++|. +.. +..+.. .| +|..|.+.|+..-+ +..+ .++++|+.||+++ +-+.+
T Consensus 202 ---v~-~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc-~L~~L~lrnN~l~t---L~gi-e~LksL~~LDlsy-Nll~~ 268 (1096)
T KOG1859|consen 202 ---VD-NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGC-KLQLLNLRNNALTT---LRGI-ENLKSLYGLDLSY-NLLSE 268 (1096)
T ss_pred ---hH-HHHhcccccccccccch-hcc--ccccchhhh-hheeeeecccHHHh---hhhH-HhhhhhhccchhH-hhhhc
Confidence 33 34578999999999886 222 222221 33 49999999876222 3332 3478899999998 44554
Q ss_pred HHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 444 EAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 444 ~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
..--...-.+..|+.|+|.||.+-.
T Consensus 269 hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 269 HSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhhhHHHHHHHHHHHhhcCCcccc
Confidence 4322222356788899999986644
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.56 E-value=9.7e-05 Score=76.64 Aligned_cols=110 Identities=19% Similarity=0.062 Sum_probs=55.6
Q ss_pred ccCCCceEEEccCCcC-ChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHh
Q 037505 189 DTVLGLESLCLSGIRS-EDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAE 267 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~ 267 (483)
..++.|++|-+.++.. -......++..+|.|+.|++++|......+ ...+.+-+|+.|++++.. +. .++.-..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~-I~--~LP~~l~ 615 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTG-IS--HLPSGLG 615 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCC-cc--ccchHHH
Confidence 3445677777776642 111222334567777777777655443322 112223467777776532 22 3444455
Q ss_pred hCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCC
Q 037505 268 NCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLP 305 (483)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (483)
.+..|.+|++........+........ +|++|.+...
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-~Lr~L~l~~s 652 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQ-SLRVLRLPRS 652 (889)
T ss_pred HHHhhheeccccccccccccchhhhcc-cccEEEeecc
Confidence 556666676654432222222222232 6777777653
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.16 E-value=0.00027 Score=47.15 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.9
Q ss_pred hCCCccEEecCC
Q 037505 215 SCKRLKKLQLKS 226 (483)
Q Consensus 215 ~~~~L~~L~l~~ 226 (483)
.+++|++|++++
T Consensus 47 ~l~~L~~L~l~~ 58 (61)
T PF13855_consen 47 NLPNLRYLDLSN 58 (61)
T ss_dssp TSTTESEEEETS
T ss_pred CCCCCCEEeCcC
Confidence 444555555544
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.16 E-value=0.00057 Score=36.29 Aligned_cols=24 Identities=21% Similarity=0.620 Sum_probs=15.4
Q ss_pred CCCCCEEeccCCCCCChHHHHHHH
Q 037505 427 CKRLQTVDIMHCCRVGAEAVELFV 450 (483)
Q Consensus 427 ~~~L~~L~l~~c~~i~~~~~~~l~ 450 (483)
|++|++|++++|.+|+|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666666666666666554
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.08 E-value=0.00032 Score=46.73 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=15.9
Q ss_pred cCcEEeccCch--hhHHHHHhcCCCcceEecccccc
Q 037505 133 HLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 133 ~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
+|++|+++++. .+....+.++++|++|++++|.+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l 37 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL 37 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence 44555555543 11233444555555555555544
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.96 E-value=2.4e-05 Score=61.99 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=37.2
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch-hhHHHHHhcCCCcceEecccccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR-PLYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
.+|+.|++++|.+++-. .-..++++|+.|+++-++ ...+..++.+|.|+.|++.++..
T Consensus 56 ~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence 56788888777554321 112357777777776554 23566777777888888777655
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.96 E-value=0.00087 Score=64.79 Aligned_cols=217 Identities=19% Similarity=0.177 Sum_probs=98.5
Q ss_pred CcEEeCCCCCCCcHHHHHHHHhhC----CCCCeEEeecCC----ChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHH
Q 037505 246 LEEVKLRTCRSIVDVVLLNLAENC----DSLNSLLVYDGC----SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVA 317 (483)
Q Consensus 246 L~~L~l~~~~~~~~~~l~~~~~~~----~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 317 (483)
+.+|++.. +.+.+.++..+...+ +.++.+++..+. ....+...+..++ +++.+.++. +.+.+.....+.
T Consensus 235 ~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~-n~l~~~~~~~~~ 311 (478)
T KOG4308|consen 235 LRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCR-QLEELSLSN-NPLTDYGVELLL 311 (478)
T ss_pred hHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhH-HHHHhhccc-CccccHHHHHHH
Confidence 44455553 234444444433332 344566665433 2234445555555 777777776 455554443332
Q ss_pred ---HcCCCCcEEEccCCCccChhhHHHHH--HhcCCCCcEEeccccccccCcchhHHH-HHhcCCCCCEEecCCCcCCCH
Q 037505 318 ---VKFRGLSVLRLQSCCLVSGDGLKALG--VAMSSGLEELALINCDVVDREPGLLAS-LGQNLKQLRKLDLSYNEMLLD 391 (483)
Q Consensus 318 ---~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~ 391 (483)
.....+.++.+.++...+..+...+. ......+....+++..........+.. ....-+.+..+++..+.. .+
T Consensus 312 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 390 (478)
T KOG4308|consen 312 EALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVI-EG 390 (478)
T ss_pred HHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhcccc-cc
Confidence 22344555666554433333222222 111112223333333333322111111 111223355555555542 22
Q ss_pred HHHHH---HHhcCCCCCEEEecCCCCCCHHHHHHH----HhcCCCCCEEeccCCCCCChHHHHHHHH---cCCCCcEEEe
Q 037505 392 KEFMA---MLVSCNYLTELKLRGCKGLTSMAVVSM----SKSCKRLQTVDIMHCCRVGAEAVELFVL---NSPQLRRVEV 461 (483)
Q Consensus 392 ~~~~~---l~~~~~~L~~L~l~~~~~i~~~~~~~l----~~~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~L~~L~l 461 (483)
..... .....+.+..+++..+...++ ....+ .... .++.++++. +.++..+...... .-+..+....
T Consensus 391 ~~~~~l~~~~~~~~~l~~~~l~~n~~~~~-~~~~l~~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (478)
T KOG4308|consen 391 RGALRLAAQLASNEKLEILDLSLNSLHDE-GAEVLTEQLSRNG-SLKALRLSR-NPITALGTEELQRALALNPGILAIRL 467 (478)
T ss_pred HHHHHhhhhhhhcchhhhhhhhcCccchh-hHHHHHHhhhhcc-cchhhhhcc-ChhhhcchHHHHHHHhcCCCcceeec
Confidence 22222 223567888888876653333 22222 2234 677777776 3344444333322 3456666666
Q ss_pred eccCCcHH
Q 037505 462 DENKLSDV 469 (483)
Q Consensus 462 ~~~~i~~~ 469 (483)
.+|.++.+
T Consensus 468 ~~~~~~~~ 475 (478)
T KOG4308|consen 468 RGNVIGRA 475 (478)
T ss_pred ccCccccc
Confidence 66766543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.81 E-value=0.00023 Score=69.44 Aligned_cols=90 Identities=26% Similarity=0.227 Sum_probs=60.1
Q ss_pred HHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH-hcCCCCCEEeccCCCCCChHHH
Q 037505 368 LASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMS-KSCKRLQTVDIMHCCRVGAEAV 446 (483)
Q Consensus 368 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~-~~~~~L~~L~l~~c~~i~~~~~ 446 (483)
+..-.+.+|.|++|+|+.|+ +++. . ....|++|++|+|+.+. ++. +..+. .+|. |+.|.++++.--+-.++
T Consensus 179 mD~SLqll~ale~LnLshNk-~~~v--~-~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNK-FTKV--D-NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTTLRGI 250 (1096)
T ss_pred HHHHHHHHHHhhhhccchhh-hhhh--H-HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHhhhhH
Confidence 33345567889999999988 4442 2 34578999999998765 221 11111 2355 99999998433222333
Q ss_pred HHHHHcCCCCcEEEeeccCCcHH
Q 037505 447 ELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 447 ~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+++.+|+.||++.|-+++-
T Consensus 251 ----e~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 251 ----ENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ----HhhhhhhccchhHhhhhcc
Confidence 4788999999999977663
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00026 Score=60.48 Aligned_cols=66 Identities=24% Similarity=0.239 Sum_probs=33.7
Q ss_pred HhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCCh-hHHHHHHHhCCCccEEecCCCC
Q 037505 150 VASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSED-TGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 150 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
+..+|+|++|.++.|+... ..........+|+|++|++++|++.+ ..++.+ ..+++|..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~------------~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRV------------SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccc------------cccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCC
Confidence 3455666777776653210 12222233444667777777666542 222222 345566666666654
No 56
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.79 E-value=0.002 Score=34.18 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=10.9
Q ss_pred CCCCEEecCCCcCCCHHHHHHH
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l 397 (483)
|+|++|+|++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555554555544444
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.69 E-value=3.7e-05 Score=60.97 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=51.3
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
.++..|.++.|.++.. .+.++ .+.+|+.|++.+++-. .+..++.+++|+.|++..+.....+
T Consensus 33 s~ITrLtLSHNKl~~v-ppnia-~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp--------------- 95 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-PPNIA-ELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP--------------- 95 (264)
T ss_pred hhhhhhhcccCceeec-CCcHH-HhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc---------------
Confidence 4566667776643321 11222 3556777777665532 4556667777777777665542111
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCC
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKS 226 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 226 (483)
.-...+|-|+.|++..|......+..-...+..|+.|.++.
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 01134455666666655544333322122233455555544
No 58
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.67 E-value=0.0011 Score=64.19 Aligned_cols=200 Identities=26% Similarity=0.275 Sum_probs=92.4
Q ss_pred CcEEeCCCCCCCcHHHHHHH---HhhCCCCCeEEeecCC-ChhHHHHHHH---hccccccEeeccCCCCCCHHHHHHH--
Q 037505 246 LEEVKLRTCRSIVDVVLLNL---AENCDSLNSLLVYDGC-SREGLLQFIS---HCRCNLQKLDLRLPLDLNNVHLSAV-- 316 (483)
Q Consensus 246 L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~-~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l-- 316 (483)
+.+|.+.+|. +.+.....+ ....+.|..|+++.+. .+.+...... ...+.+++|.+..| .++..+...+
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 4555555543 233333333 3445566777776443 3333333222 21234556666553 2333222222
Q ss_pred -HHcCCCCcEEEccCCCccChhhHHHHH---Hh---cCCCCcEEeccccccccCcchhHHHHHhcCCC-CCEEecCCCcC
Q 037505 317 -AVKFRGLSVLRLQSCCLVSGDGLKALG---VA---MSSGLEELALINCDVVDREPGLLASLGQNLKQ-LRKLDLSYNEM 388 (483)
Q Consensus 317 -~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~-L~~L~L~~~~~ 388 (483)
....+.++.++++.+... ..+...+. .. ...+++.|.+.+|.........+.......+. +..|++..|.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~- 244 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK- 244 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-
Confidence 222455666666554322 22222211 11 12256666666666554433333333334444 5556665554
Q ss_pred CCHHHHHHHHhcC----CCCCEEEecCCCCCCHHHHHHHH---hcCCCCCEEeccCCCCCChHHHHHHHH
Q 037505 389 LLDKEFMAMLVSC----NYLTELKLRGCKGLTSMAVVSMS---KSCKRLQTVDIMHCCRVGAEAVELFVL 451 (483)
Q Consensus 389 ~~~~~~~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~~ 451 (483)
+.|.++..+.+.+ +.++.+++..|. +++.+...+. ..|++++.+.+++ +.+++.+...+.+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLE 312 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHH
Confidence 5555555544433 244666666655 4444433332 2455666666665 4455555544443
No 59
>PLN03150 hypothetical protein; Provisional
Probab=96.66 E-value=0.0041 Score=63.09 Aligned_cols=106 Identities=12% Similarity=0.005 Sum_probs=67.6
Q ss_pred cCcEEeccCch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHH
Q 037505 133 HLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVG 210 (483)
Q Consensus 133 ~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~ 210 (483)
.++.|++.++. ...+..+..+++|+.|++++|.+. .........+++|+.|++++|.++.....
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------------GNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------------CcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 36778887765 235567888899999999888762 11222345678899999999987643333
Q ss_pred HHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 211 WLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 211 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
. +..+++|+.|+++++......+. .+.....++..+++.++.
T Consensus 485 ~-l~~L~~L~~L~Ls~N~l~g~iP~--~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 485 S-LGQLTSLRILNLNGNSLSGRVPA--ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred H-HhcCCCCCEEECcCCcccccCCh--HHhhccccCceEEecCCc
Confidence 3 45788999999987653222211 122222456677777654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.62 E-value=0.0084 Score=56.07 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCC
Q 037505 192 LGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLR 252 (483)
Q Consensus 192 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 252 (483)
.+|++|.++++..-. .+... ..++|++|.+++|..+.. ..+.|+.|++.
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~--LP~nLe~L~Ls~Cs~L~s---------LP~sLe~L~L~ 120 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGS--IPEGLEKLTVCHCPEISG---------LPESVRSLEIK 120 (426)
T ss_pred CCCcEEEccCCCCcc-cCCch--hhhhhhheEccCcccccc---------cccccceEEeC
Confidence 456666666543210 01100 123677777766643321 11456666665
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00056 Score=58.96 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=56.7
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
.+.++|+..++.+++..+ .+.++.|+.|.++-+.--.+..+..|++|++|.+..|.+.++. -..
T Consensus 19 ~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sld-------------EL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLD-------------ELE 82 (388)
T ss_pred HHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHH-------------HHH
Confidence 355666666665555433 3356666666666544445555666667777766666553221 222
Q ss_pred ccccCCCceEEEccCCcCC----hhHHHHHHHhCCCccEEe
Q 037505 187 EIDTVLGLESLCLSGIRSE----DTGVGWLWRSCKRLKKLQ 223 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~----~~~l~~~~~~~~~L~~L~ 223 (483)
-.+++|+|+.|.|..|+.. ...-..++..+|||++|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 2355666666666666532 222344566677777775
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.50 E-value=0.0024 Score=38.96 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 428 KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
++|++|++++ ++|++- ......|++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~-N~i~~l--~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDL--PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETS-SS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccC-CCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence 4677777777 345542 2323477788888888777765
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.42 E-value=0.0058 Score=57.13 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=26.8
Q ss_pred cCCCceEEEccCCcCChhHHHHHHHhCC-CccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 190 TVLGLESLCLSGIRSEDTGVGWLWRSCK-RLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
.+.+++.|++++|.+.. +. .+| +|+.|.+++|..+...+- ...++|++|.+++|.
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~-----~LP~nLe~L~Ls~Cs 105 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPG-----SIPEGLEKLTVCHCP 105 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCc-----hhhhhhhheEccCcc
Confidence 34566666666664322 11 233 566666666554422210 011456666666654
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.30 E-value=0.0032 Score=51.84 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=57.2
Q ss_pred CCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCCh-hHH
Q 037505 131 CNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSED-TGV 209 (483)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~l 209 (483)
..+...++++++.-.....+..++.|.+|.+.+|.+..++ .......++|..|.+.+|.+-. ..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~--------------p~L~~~~p~l~~L~LtnNsi~~l~dl 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID--------------PDLDTFLPNLKTLILTNNSIQELGDL 106 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeec--------------cchhhhccccceEEecCcchhhhhhc
Confidence 3355556666554444444556667777777777764333 1122455667777777776522 113
Q ss_pred HHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 210 GWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
..+ ..||+|++|.+-+++.-........+...+|+|+.|++.+.
T Consensus 107 ~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 107 DPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chh-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 332 35777777777654421111111122233466666666543
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.08 E-value=0.0072 Score=36.85 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=6.4
Q ss_pred cCCCCCEEecCCCc
Q 037505 374 NLKQLRKLDLSYNE 387 (483)
Q Consensus 374 ~~~~L~~L~L~~~~ 387 (483)
.+++|+.|++++|.
T Consensus 22 ~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 22 NLPNLETLNLSNNP 35 (44)
T ss_dssp TCTTSSEEEETSSC
T ss_pred CCCCCCEEEecCCC
Confidence 44444444444443
No 66
>PLN03150 hypothetical protein; Provisional
Probab=96.06 E-value=0.012 Score=59.86 Aligned_cols=106 Identities=14% Similarity=0.092 Sum_probs=53.0
Q ss_pred CcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCC
Q 037505 350 LEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKR 429 (483)
Q Consensus 350 L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~ 429 (483)
++.|+++++..... +......+++|+.|+|++|. ++.. +...+..+++|+.|++++|. ++... ......+++
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~N~-lsg~i-P~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSYNS-FNGSI-PESLGQLTS 491 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCCCC-CCCCC-chHHhcCCC
Confidence 55666666655433 22233456777777777665 2211 22223466777777777664 33211 122334677
Q ss_pred CCEEeccCCCCCChHHHHHHHHcCCCCcEEEeecc
Q 037505 430 LQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDEN 464 (483)
Q Consensus 430 L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~ 464 (483)
|+.|+++++. ++...-..+.....++..+++.+|
T Consensus 492 L~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 492 LRILNLNGNS-LSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCEEECcCCc-ccccCChHHhhccccCceEEecCC
Confidence 7777777643 332211122222234455666554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.0019 Score=55.85 Aligned_cols=103 Identities=12% Similarity=0.050 Sum_probs=70.8
Q ss_pred CcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHH
Q 037505 132 NHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGW 211 (483)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 211 (483)
.+.+.|+..+|.--+......++.|+.|.++-|.+..+. ....+.+|++|.|..|.+.+..--.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~----------------pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA----------------PLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch----------------hHHHHHHHHHHHHHhcccccHHHHH
Confidence 467788888876556677788999999999988763322 2357788899999988886544334
Q ss_pred HHHhCCCccEEecCCCCCC--CchhHHHHHhhccCCCcEEe
Q 037505 212 LWRSCKRLKKLQLKSCSGI--GDGGSFANFVKCSQGLEEVK 250 (483)
Q Consensus 212 ~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~L~~L~ 250 (483)
.+..+|+|+.|-|..++.. ............+|+|++|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4577888888877654332 22233344556668888886
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.0064 Score=52.26 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCH-HHHHHHHhcCCCCCEEEecCCC--CCCHHHHHHH
Q 037505 347 SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLD-KEFMAMLVSCNYLTELKLRGCK--GLTSMAVVSM 423 (483)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~--~i~~~~~~~l 423 (483)
.|+|++|.++.+....... +..+...+|+|+++++++|. +.+ ..+..+ +.+++|..|++.+|. ++++.- ..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~--l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr-e~v 138 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGG--LEVLAEKAPNLKVLNLSGNK-IKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYR-EKV 138 (260)
T ss_pred cchhhhhcccCCccccccc--ceehhhhCCceeEEeecCCc-cccccccchh-hhhcchhhhhcccCCccccccHH-HHH
Confidence 4577777776663222111 44445556777777777766 332 122222 245566666666665 222211 122
Q ss_pred HhcCCCCCEEeccC
Q 037505 424 SKSCKRLQTVDIMH 437 (483)
Q Consensus 424 ~~~~~~L~~L~l~~ 437 (483)
+.-+++|+.|+-..
T Consensus 139 f~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCD 152 (260)
T ss_pred HHHhhhhccccccc
Confidence 33345555555444
No 69
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.30 E-value=0.0095 Score=55.00 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
++||+|+|..|.+.|+.. .|+.+++.|||.||.....
T Consensus 5 s~Lp~dll~~i~~~l~~~--~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 5 STLPEELLHMIAGRLFSN--VELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhCCHHHHHHHHhhCCcH--HHHHHHHhhhhhHHHhccc
Confidence 479999999999999765 4999999999999998554
No 70
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.88 E-value=0.016 Score=51.42 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.2
Q ss_pred cccch----HHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 2 ENMLC----DELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 2 ~~~LP----~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
.+.|| +++-+.||+||+.. +++++-+|||+|+++...
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~---sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDAL---SLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchh---hhhHHHHHHHHHHHHhcc
Confidence 35789 99999999999999 999999999999999443
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.82 E-value=0.02 Score=54.99 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=18.0
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSC 331 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 331 (483)
+++.|++++ +.+.+... .....+++.|++++.
T Consensus 256 ~l~~L~~s~-n~i~~i~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSN-NQISSISS---LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccc-cccccccc---ccccCccCEEeccCc
Confidence 567777766 33332211 233667888887764
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.68 E-value=0.025 Score=29.20 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=10.4
Q ss_pred CCCCcEEEeeccCCcHHHH
Q 037505 453 SPQLRRVEVDENKLSDVVR 471 (483)
Q Consensus 453 ~~~L~~L~l~~~~i~~~~~ 471 (483)
|++|+.|++++|++++++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 4566677777777666643
No 73
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.45 E-value=0.017 Score=50.91 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHhcCC-----CCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLP-----TTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~-----~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
..||||||..||...- .. ++-++++|||.|+.....
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~r---sL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLR---SLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchh---hHHHhHhhHHHHHHHHcC
Confidence 5799999999998654 36 899999999999988544
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.40 E-value=0.036 Score=45.86 Aligned_cols=111 Identities=15% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCK 428 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 428 (483)
+...++++++.....+ .+...++|.+|.+++|. |++.+ ..+...+|+|+.|.+.++.-..-..+..++ .||
T Consensus 43 ~~d~iDLtdNdl~~l~------~lp~l~rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD------NLPHLPRLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCP 113 (233)
T ss_pred ccceecccccchhhcc------cCCCccccceEEecCCc-ceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCC
Confidence 6678888888776532 13467899999998887 55422 122335689999999997632223344444 489
Q ss_pred CCCEEeccCCCCCChHH-HH-HHHHcCCCCcEEEeeccCCcHH
Q 037505 429 RLQTVDIMHCCRVGAEA-VE-LFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 429 ~L~~L~l~~c~~i~~~~-~~-~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
.|++|.+-+.+ ++... .. .+.-.+|+|+.||..+=...+.
T Consensus 114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence 99999998854 44332 21 1122489999999866444443
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.22 E-value=0.039 Score=53.01 Aligned_cols=132 Identities=23% Similarity=0.224 Sum_probs=67.5
Q ss_pred HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHH
Q 037505 318 VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 318 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 397 (483)
..+++|+.|+++.+. +++...... ..+.|+.|+++++..... +........|++|.++++..+.. ...
T Consensus 160 ~~l~~L~~L~l~~N~-l~~l~~~~~---~~~~L~~L~ls~N~i~~l-----~~~~~~~~~L~~l~~~~N~~~~~---~~~ 227 (394)
T COG4886 160 RNLPNLKNLDLSFND-LSDLPKLLS---NLSNLNNLDLSGNKISDL-----PPEIELLSALEELDLSNNSIIEL---LSS 227 (394)
T ss_pred hccccccccccCCch-hhhhhhhhh---hhhhhhheeccCCccccC-----chhhhhhhhhhhhhhcCCcceec---chh
Confidence 346777777777642 333222110 223777777777766552 22211233477777777642221 111
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 398 LVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 398 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
...++++..+.+.++. +.+ +......++.++.|++++ +.+++... .....+++.|+++++.++.
T Consensus 228 ~~~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l~~L~~s~-n~i~~i~~---~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 228 LSNLKNLSGLELSNNK-LED--LPESIGNLSNLETLDLSN-NQISSISS---LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhhcccccccccCCce-eee--ccchhccccccceecccc-cccccccc---ccccCccCEEeccCccccc
Confidence 2245566666655543 221 012233466677777777 34444332 2356677777777766554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.05 E-value=0.065 Score=27.57 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=16.9
Q ss_pred CCCCceEEccCCccchhHHHHHH
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLS 128 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~ 128 (483)
+++|++|+|++|.+++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47889999999988888887765
No 77
>PF13013 F-box-like_2: F-box-like domain
Probab=91.78 E-value=0.14 Score=38.08 Aligned_cols=28 Identities=29% Similarity=0.139 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhH
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSK 33 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr 33 (483)
.+||+||+..||+|.... +...+...|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~---~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDP---ILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcH---HHHHHHHHHH
Confidence 469999999999999999 9999988887
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.43 E-value=0.11 Score=40.23 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCK 428 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 428 (483)
.+-.++++.|....... ..........|...+|++|.. . +.-..+...+|.++.|++.++. +++...+ ...++
T Consensus 28 E~h~ldLssc~lm~i~d--avy~l~~~~el~~i~ls~N~f-k-~fp~kft~kf~t~t~lNl~~ne-isdvPeE--~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIAD--AVYMLSKGYELTKISLSDNGF-K-KFPKKFTIKFPTATTLNLANNE-ISDVPEE--LAAMP 100 (177)
T ss_pred HhhhcccccchhhHHHH--HHHHHhCCceEEEEecccchh-h-hCCHHHhhccchhhhhhcchhh-hhhchHH--HhhhH
Confidence 45567777776653211 122222345566677777652 1 1123445567788888888754 6665544 33478
Q ss_pred CCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 429 RLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 429 ~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
.|+.|+++..+- ... .+-+. .+.++-.|+..+|.+-+
T Consensus 101 aLr~lNl~~N~l-~~~-p~vi~-~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 101 ALRSLNLRFNPL-NAE-PRVIA-PLIKLDMLDSPENARAE 137 (177)
T ss_pred HhhhcccccCcc-ccc-hHHHH-HHHhHHHhcCCCCcccc
Confidence 888888888543 221 12222 35566667766665444
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.27 E-value=0.34 Score=26.01 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.4
Q ss_pred CCCceEEccCCccchhHHHHHHHhC
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEAC 131 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~ 131 (483)
++|++|+|++|.+.+.+...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 6799999999999999988887644
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.98 E-value=0.11 Score=50.04 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=18.7
Q ss_pred CCcCcEEeccCchhhHHHH-HhcCCCcceEecccccc
Q 037505 131 CNHLTSLTVSLSRPLYFNW-VASFSCLKELSVYACDA 166 (483)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~~ 166 (483)
+.+|+.|++.++.-..... +..+++|++|++++|.+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I 130 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI 130 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccc
Confidence 4455555555544332333 45556666666666555
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.72 E-value=0.089 Score=50.79 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=56.5
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+.+|+.+++.+. .+... ... ..+.++|+.|+++++.+... ..+ ..++.|+.|++.+|. +++ +..+ .
T Consensus 94 ~~~l~~l~l~~n-~i~~i--~~~-l~~~~~L~~L~ls~N~I~~i-----~~l-~~l~~L~~L~l~~N~-i~~--~~~~-~ 159 (414)
T KOG0531|consen 94 LKSLEALDLYDN-KIEKI--ENL-LSSLVNLQVLDLSFNKITKL-----EGL-STLTLLKELNLSGNL-ISD--ISGL-E 159 (414)
T ss_pred ccceeeeecccc-chhhc--ccc-hhhhhcchheeccccccccc-----cch-hhccchhhheeccCc-chh--ccCC-c
Confidence 667777777653 22221 110 12334788888887776553 222 235557788887776 332 1111 1
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 037505 400 SCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHC 438 (483)
Q Consensus 400 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c 438 (483)
.++.|+.++++++. +++..... ...+.+++.+++.+.
T Consensus 160 ~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence 36677777777765 43322211 244677777777773
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.92 E-value=0.72 Score=24.76 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=18.8
Q ss_pred CCceEEEccCCcCChhHHHHHHHh
Q 037505 192 LGLESLCLSGIRSEDTGVGWLWRS 215 (483)
Q Consensus 192 ~~L~~L~l~~~~~~~~~l~~~~~~ 215 (483)
++|+.|+|++|.+++.+...+...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 468888899998888887776554
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.91 E-value=0.68 Score=44.68 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=22.4
Q ss_pred HhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCC
Q 037505 372 GQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGC 412 (483)
Q Consensus 372 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 412 (483)
..+.|.+..+.|++|....-+++..+.+..|+|+.|+|+++
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555555566655553333445555555566666666655
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.14 E-value=0.31 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.869 Sum_probs=6.2
Q ss_pred CCCcEEEeeccCCc
Q 037505 454 PQLRRVEVDENKLS 467 (483)
Q Consensus 454 ~~L~~L~l~~~~i~ 467 (483)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35566666666543
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.47 E-value=0.55 Score=36.57 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=35.2
Q ss_pred HHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh-hHHHHHhcCCCcceEecccccc
Q 037505 102 VSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP-LYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 102 l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
+...+|.++.|++..|.+.+.... ++ .++.|+.|+++.+.- ..+..+..+.++-.|+..++..
T Consensus 72 ft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 72 FTIKFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred HhhccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 334456667777776655443332 33 466777777766552 2445555555666666655544
No 86
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=83.39 E-value=0.45 Score=46.07 Aligned_cols=103 Identities=20% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
--|+.|-+++|+++.... .+. ..+.|..|+.+.|.-. .+..+..+.+|+.|++..|+...++.
T Consensus 143 lpLkvli~sNNkl~~lp~-~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~-------------- 206 (722)
T KOG0532|consen 143 LPLKVLIVSNNKLTSLPE-EIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE-------------- 206 (722)
T ss_pred CcceeEEEecCccccCCc-ccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH--------------
Confidence 346777777764432111 111 3456677777766644 55667777788888887777644331
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCC
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSG 229 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 229 (483)
... .-.|.+|+++.|++.. +..-+..+..|++|.|.+++.
T Consensus 207 -El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 207 -ELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred -HHh-CCceeeeecccCceee--cchhhhhhhhheeeeeccCCC
Confidence 111 4468889999888765 333345678888888877653
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.31 E-value=1.6 Score=42.24 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYN 386 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 386 (483)
.+..+.++++.....+. +..+.+..|+|++|+|+++
T Consensus 219 ~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhh--hhHHHHhcchhheeecccc
Confidence 44444444444333211 3334444555555555554
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.74 E-value=0.57 Score=46.44 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
..||.|+-.+||.||+.+ +++++++||+.|+.+...
T Consensus 109 ~~lp~el~~~il~~Ld~~---~l~~~~~v~~~w~~~~~~ 144 (537)
T KOG0274|consen 109 SLLPSELSLHILSFLDGR---DLLAVRQVCRNWNKLLDD 144 (537)
T ss_pred hcccchhcccccccCCHH---Hhhhhhhhcchhhhhhhc
Confidence 468999999999999999 999999999999999443
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=72.92 E-value=1.5 Score=21.86 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=9.5
Q ss_pred CCcEEEeeccCCc
Q 037505 455 QLRRVEVDENKLS 467 (483)
Q Consensus 455 ~L~~L~l~~~~i~ 467 (483)
+|+.|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677888887766
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=70.76 E-value=3.2 Score=21.57 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=13.2
Q ss_pred CCCCcEEEeeccCCcHH
Q 037505 453 SPQLRRVEVDENKLSDV 469 (483)
Q Consensus 453 ~~~L~~L~l~~~~i~~~ 469 (483)
+++|+.|++++|++..-
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46788999998877764
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=70.76 E-value=3.2 Score=21.57 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=13.2
Q ss_pred CCCCcEEEeeccCCcHH
Q 037505 453 SPQLRRVEVDENKLSDV 469 (483)
Q Consensus 453 ~~~L~~L~l~~~~i~~~ 469 (483)
+++|+.|++++|++..-
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 46788999998877764
No 92
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=70.03 E-value=4.3 Score=21.31 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=9.5
Q ss_pred CCEEecCCCcCCCHHHHHHHHhcC
Q 037505 378 LRKLDLSYNEMLLDKEFMAMLVSC 401 (483)
Q Consensus 378 L~~L~L~~~~~~~~~~~~~l~~~~ 401 (483)
|++|+|.....-.+..+..++..|
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~C 25 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGC 25 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccC
Confidence 444444443322222344444333
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=65.90 E-value=15 Score=33.49 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh--cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCC
Q 037505 312 HLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA--MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEML 389 (483)
Q Consensus 312 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 389 (483)
.+..+-..-|.++...+.....++...+..+... .....+.+.+.+....+....+++.+...++.|++|++.++. |
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnF-I 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNF-I 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccc-c
Confidence 3444444456677777766666665554444321 122344444444444444334455566667777777777765 6
Q ss_pred CHHHHHHHHhcC
Q 037505 390 LDKEFMAMLVSC 401 (483)
Q Consensus 390 ~~~~~~~l~~~~ 401 (483)
+..++.++...+
T Consensus 268 tg~gi~a~~~al 279 (353)
T KOG3735|consen 268 TGLGIMALLRAL 279 (353)
T ss_pred ccHHHHHHHHHH
Confidence 666666665443
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.27 E-value=7.3 Score=20.48 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.3
Q ss_pred CCCCcEEEeeccCCcH
Q 037505 453 SPQLRRVEVDENKLSD 468 (483)
Q Consensus 453 ~~~L~~L~l~~~~i~~ 468 (483)
+.+|+.|+++.|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3578888888888754
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=58.83 E-value=36 Score=31.19 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcC---CCCCEEEecCCCCCCH---HHHHHHHhcCCCCCEEeccCCCCC
Q 037505 368 LASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSC---NYLTELKLRGCKGLTS---MAVVSMSKSCKRLQTVDIMHCCRV 441 (483)
Q Consensus 368 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~i~~---~~~~~l~~~~~~L~~L~l~~c~~i 441 (483)
+..+-.+-|+++...+.+...+....+..+...+ ...+...+.+-. .++ .++..+.+.++.|+.|++.+ +.|
T Consensus 190 leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr-~~d~vA~a~a~ml~~n~sl~slnves-nFI 267 (353)
T KOG3735|consen 190 LERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR-SSDPVAFAIAEMLKENKSLTSLNVES-NFI 267 (353)
T ss_pred HHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc-CCchhHHHHHHHHhhcchhhheeccc-ccc
Confidence 5555566788888888887777776666665433 344444444422 222 23444455678888888888 678
Q ss_pred ChHHHHHHHHcCC
Q 037505 442 GAEAVELFVLNSP 454 (483)
Q Consensus 442 ~~~~~~~l~~~~~ 454 (483)
+..++.++...+.
T Consensus 268 tg~gi~a~~~al~ 280 (353)
T KOG3735|consen 268 TGLGIMALLRALQ 280 (353)
T ss_pred ccHHHHHHHHHHh
Confidence 8888777765544
No 96
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=47.02 E-value=2.6 Score=41.18 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=29.5
Q ss_pred ccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 189 DTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
..+.+|+.|++..|.+.+- .+++. .-.|..|+++ |+.+...+ .-+..++.|+.|-|.+++
T Consensus 186 ~~l~slr~l~vrRn~l~~l-p~El~--~LpLi~lDfS-cNkis~iP---v~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDL-PEELC--SLPLIRLDFS-CNKISYLP---VDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhHHHHHHHHHhhhhhhhC-CHHHh--CCceeeeecc-cCceeecc---hhhhhhhhheeeeeccCC
Confidence 3444555555555543221 11111 2246677775 34443332 334445677777777654
No 97
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=44.14 E-value=11 Score=28.85 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=3.8
Q ss_pred HHHHcCCCC
Q 037505 448 LFVLNSPQL 456 (483)
Q Consensus 448 ~l~~~~~~L 456 (483)
.++..|++|
T Consensus 80 ~mF~~~~~l 88 (120)
T PF03382_consen 80 NMFSGCSSL 88 (120)
T ss_pred HHHhhhHHc
Confidence 333344444
No 98
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=35.95 E-value=19 Score=18.92 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=10.6
Q ss_pred CCCcEEEeeccCCcH
Q 037505 454 PQLRRVEVDENKLSD 468 (483)
Q Consensus 454 ~~L~~L~l~~~~i~~ 468 (483)
++|+.|++++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 457778888877664
No 99
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=32.26 E-value=1.6e+02 Score=19.67 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=8.5
Q ss_pred CEEEecCCCCCCHHHHHHHHh
Q 037505 405 TELKLRGCKGLTSMAVVSMSK 425 (483)
Q Consensus 405 ~~L~l~~~~~i~~~~~~~l~~ 425 (483)
+.+.+.++ .++...+..+++
T Consensus 35 ~~i~l~~~-~~t~~dln~Flk 54 (70)
T PF07735_consen 35 KKIELWNS-KFTNEDLNKFLK 54 (70)
T ss_pred CEEEEECC-CCCHHHHHHHHH
Confidence 34444432 244444444433
No 100
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=30.65 E-value=48 Score=25.35 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=5.2
Q ss_pred hCCCccEEecC
Q 037505 215 SCKRLKKLQLK 225 (483)
Q Consensus 215 ~~~~L~~L~l~ 225 (483)
.+++|+.+.+.
T Consensus 79 ~~~~l~~i~~~ 89 (129)
T PF13306_consen 79 NCTNLKNIDIP 89 (129)
T ss_dssp T-TTECEEEET
T ss_pred ccccccccccC
Confidence 34555555553
No 101
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=25.82 E-value=91 Score=23.90 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 037505 402 NYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMH 437 (483)
Q Consensus 402 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 437 (483)
|+=+.+++..-| ++..+..+++.||+|+-+.+-.
T Consensus 17 ~nE~~VHlAFRP--SN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 17 PNEEIVHLAFRP--SNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred CCceEEEEEecC--cchHHHHHHHhCCCCeEEeCCh
Confidence 555666666544 3445777788888888887764
No 102
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=20.50 E-value=1.2e+02 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHH
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNL 38 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~ 38 (483)
.+||.|+...|+..|+.. +|+..+++|-..-+.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh--~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDH--RDLESLAQAWETLAKL 236 (332)
T ss_pred ccchHHHHHHHHHHccCc--chHHHHHHhhHHHHHH
Confidence 379999999999999988 6999998886554444
Done!