Query 037505
Match_columns 483
No_of_seqs 232 out of 2847
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 22:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 100.0 5.2E-42 1.8E-46 345.9 36.9 446 3-474 14-533 (592)
2 2p1m_B Transport inhibitor res 100.0 9.2E-41 3.2E-45 337.0 41.3 449 2-476 6-528 (594)
3 3ogk_B Coronatine-insensitive 100.0 1.1E-28 3.8E-33 248.6 29.3 263 189-464 267-548 (592)
4 2p1m_B Transport inhibitor res 100.0 2.5E-28 8.7E-33 246.1 30.7 377 60-465 97-542 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 7.6E-26 2.6E-30 220.7 39.6 392 48-469 8-442 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 5.6E-26 1.9E-30 221.7 36.4 373 68-472 3-416 (461)
7 2ast_B S-phase kinase-associat 100.0 3E-27 1E-31 220.7 18.8 289 3-360 10-305 (336)
8 4fmz_A Internalin; leucine ric 99.9 6.1E-21 2.1E-25 178.7 19.7 303 107-467 44-346 (347)
9 2ast_B S-phase kinase-associat 99.9 6.6E-20 2.3E-24 170.8 21.8 258 194-469 49-308 (336)
10 4fmz_A Internalin; leucine ric 99.8 4.2E-20 1.4E-24 172.9 15.9 303 66-439 42-344 (347)
11 1o6v_A Internalin A; bacterial 99.8 7.4E-20 2.5E-24 178.1 16.3 326 64-468 64-389 (466)
12 3rgz_A Protein brassinosteroid 99.8 2.1E-22 7.1E-27 208.0 -2.5 148 63-228 95-258 (768)
13 3v47_A TOLL-like receptor 5B a 99.8 2.5E-21 8.5E-26 188.4 2.2 337 105-469 52-410 (455)
14 1o6v_A Internalin A; bacterial 99.8 3.4E-19 1.2E-23 173.5 16.5 304 104-469 65-368 (466)
15 3t6q_A CD180 antigen; protein- 99.8 1.1E-21 3.9E-26 197.9 -2.3 113 349-469 401-515 (606)
16 3rgz_A Protein brassinosteroid 99.8 7.4E-22 2.5E-26 203.9 -4.9 136 319-467 416-551 (768)
17 2ca6_A RAN GTPase-activating p 99.8 2.9E-17 1E-21 155.8 24.9 267 191-463 31-339 (386)
18 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.3E-24 179.1 10.3 149 63-228 45-207 (549)
19 3t6q_A CD180 antigen; protein- 99.8 8.7E-21 3E-25 191.4 0.1 139 319-468 423-561 (606)
20 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-21 7.6E-26 195.8 -4.5 86 106-205 79-166 (606)
21 2z81_A CD282 antigen, TOLL-lik 99.8 2.3E-19 7.9E-24 178.8 10.0 353 68-467 26-423 (549)
22 3o6n_A APL1; leucine-rich repe 99.8 3.5E-19 1.2E-23 169.4 10.0 150 296-470 206-355 (390)
23 3v47_A TOLL-like receptor 5B a 99.8 3.1E-20 1.1E-24 180.6 2.2 333 107-469 30-386 (455)
24 2ca6_A RAN GTPase-activating p 99.8 1.7E-16 5.8E-21 150.5 26.6 252 212-470 27-319 (386)
25 2z63_A TOLL-like receptor 4, v 99.8 8.9E-21 3E-25 190.0 -4.8 113 348-469 421-533 (570)
26 2z7x_B TOLL-like receptor 1, v 99.8 5E-19 1.7E-23 175.1 6.4 157 296-469 325-483 (520)
27 3oja_B Anopheles plasmodium-re 99.7 4E-18 1.4E-22 171.0 11.8 308 107-469 51-360 (597)
28 3vq2_A TLR4, TOLL-like recepto 99.7 1.9E-20 6.4E-25 189.0 -5.8 66 105-171 102-170 (606)
29 2z7x_B TOLL-like receptor 1, v 99.7 1.4E-18 4.9E-23 171.8 7.0 203 68-305 21-257 (520)
30 3goz_A Leucine-rich repeat-con 99.7 3.4E-16 1.2E-20 146.9 22.6 251 189-469 19-299 (362)
31 2id5_A Lingo-1, leucine rich r 99.7 3.2E-19 1.1E-23 174.4 1.0 301 107-468 32-334 (477)
32 1ziw_A TOLL-like receptor 3; i 99.7 6.1E-19 2.1E-23 180.4 1.3 108 106-228 72-182 (680)
33 4eco_A Uncharacterized protein 99.7 4.2E-20 1.4E-24 186.4 -8.2 113 105-228 204-341 (636)
34 1ziw_A TOLL-like receptor 3; i 99.7 4.3E-18 1.5E-22 174.1 6.0 356 68-469 25-396 (680)
35 4ecn_A Leucine-rich repeat pro 99.7 1.1E-18 3.7E-23 179.4 0.5 321 105-468 489-841 (876)
36 3bz5_A Internalin-J, INLJ; leu 99.7 1.9E-18 6.5E-23 166.8 2.0 204 66-331 40-243 (457)
37 4ecn_A Leucine-rich repeat pro 99.7 5.3E-19 1.8E-23 181.6 -2.2 333 105-468 446-820 (876)
38 3j0a_A TOLL-like receptor 5; m 99.7 7.6E-19 2.6E-23 183.3 -1.3 37 130-166 71-109 (844)
39 2z63_A TOLL-like receptor 4, v 99.7 5.6E-19 1.9E-23 177.0 -3.7 131 68-228 28-160 (570)
40 3o6n_A APL1; leucine-rich repe 99.7 1.4E-17 4.7E-22 158.4 5.7 323 66-457 43-367 (390)
41 3goz_A Leucine-rich repeat-con 99.7 1.6E-14 5.3E-19 135.6 25.9 257 146-443 14-298 (362)
42 4eco_A Uncharacterized protein 99.7 6.9E-19 2.4E-23 177.5 -4.5 308 130-468 204-580 (636)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.7E-17 5.9E-22 165.5 4.3 158 296-469 354-512 (562)
44 3j0a_A TOLL-like receptor 5; m 99.7 2.9E-18 9.8E-23 178.9 -1.7 115 63-205 43-161 (844)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.6E-17 1.2E-21 163.2 6.3 331 105-468 74-487 (562)
46 2id5_A Lingo-1, leucine rich r 99.7 1.8E-18 6E-23 169.2 -3.5 298 68-413 32-331 (477)
47 3oja_B Anopheles plasmodium-re 99.6 9.1E-17 3.1E-21 161.1 6.8 288 131-469 50-339 (597)
48 1xku_A Decorin; proteoglycan, 99.6 1.2E-16 4.3E-21 148.1 5.3 128 107-254 52-181 (330)
49 3bz5_A Internalin-J, INLJ; leu 99.6 1E-16 3.5E-21 154.8 4.3 297 106-468 41-353 (457)
50 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-16 3.9E-21 148.4 -1.4 103 107-228 54-158 (332)
51 4g8a_A TOLL-like receptor 4; l 99.6 7E-17 2.4E-21 163.9 -5.2 123 347-478 468-596 (635)
52 1jl5_A Outer protein YOPM; leu 99.5 4E-15 1.4E-19 143.4 4.8 287 106-468 110-410 (454)
53 2z80_A TOLL-like receptor 2, v 99.5 5.8E-15 2E-19 138.2 4.8 117 320-443 197-316 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.5 4.6E-16 1.6E-20 143.2 -2.8 82 348-438 191-272 (317)
55 2z80_A TOLL-like receptor 2, v 99.5 4.2E-15 1.4E-19 139.1 2.5 114 296-414 199-313 (353)
56 4g8a_A TOLL-like receptor 4; l 99.5 1E-15 3.5E-20 155.3 -2.4 131 68-228 52-184 (635)
57 3un9_A NLR family member X1; l 99.5 1.4E-12 4.9E-17 121.8 18.2 169 296-469 102-285 (372)
58 3e4g_A ATP synthase subunit S, 99.5 7.5E-14 2.6E-18 113.2 8.1 105 349-458 62-171 (176)
59 1xku_A Decorin; proteoglycan, 99.5 5.3E-15 1.8E-19 137.1 0.1 290 133-465 32-330 (330)
60 3un9_A NLR family member X1; l 99.4 2.7E-12 9.4E-17 119.9 17.8 173 296-474 73-260 (372)
61 3g06_A SSPH2 (leucine-rich rep 99.4 2.7E-13 9.4E-18 134.8 11.7 260 107-469 40-299 (622)
62 1jl5_A Outer protein YOPM; leu 99.4 9.2E-14 3.2E-18 133.9 6.5 221 189-468 150-371 (454)
63 3o53_A Protein LRIM1, AGAP0063 99.4 7.7E-14 2.6E-18 128.3 4.2 128 320-462 143-270 (317)
64 3e4g_A ATP synthase subunit S, 99.4 1.9E-13 6.5E-18 110.8 5.9 102 376-480 61-168 (176)
65 2ft3_A Biglycan; proteoglycan, 99.4 1.8E-14 6E-19 133.6 -1.3 129 67-228 53-183 (332)
66 3g06_A SSPH2 (leucine-rich rep 99.4 8.3E-13 2.8E-17 131.4 10.4 243 107-422 61-303 (622)
67 3zyi_A Leucine-rich repeat-con 99.4 1.9E-13 6.4E-18 132.4 5.3 131 107-255 75-207 (452)
68 3oja_A Leucine-rich immune mol 99.4 4.4E-14 1.5E-18 137.6 0.7 121 107-254 34-154 (487)
69 3zyj_A Leucine-rich repeat-con 99.4 3.2E-13 1.1E-17 130.2 6.7 131 107-255 64-196 (440)
70 1wwl_A Monocyte differentiatio 99.4 4.5E-14 1.5E-18 129.5 -0.8 247 106-413 42-307 (312)
71 3oja_A Leucine-rich immune mol 99.4 2.2E-14 7.4E-19 139.7 -3.3 235 131-435 33-269 (487)
72 1ogq_A PGIP-2, polygalacturona 99.3 4.6E-15 1.6E-19 136.1 -8.4 84 320-414 220-303 (313)
73 3zyi_A Leucine-rich repeat-con 99.3 3.1E-13 1E-17 130.9 3.8 82 320-412 195-276 (452)
74 2z66_A Variable lymphocyte rec 99.3 9.9E-15 3.4E-19 133.7 -6.8 110 320-440 149-260 (306)
75 2z66_A Variable lymphocyte rec 99.3 5.3E-14 1.8E-18 128.8 -1.9 106 107-228 28-137 (306)
76 3zyj_A Leucine-rich repeat-con 99.3 4.3E-13 1.5E-17 129.3 4.4 82 320-412 184-265 (440)
77 4fcg_A Uncharacterized protein 99.3 2.2E-13 7.6E-18 125.6 1.4 39 189-229 124-162 (328)
78 1ozn_A Reticulon 4 receptor; N 99.3 2.2E-13 7.5E-18 123.3 0.1 129 107-254 32-163 (285)
79 4fcg_A Uncharacterized protein 99.3 3.5E-13 1.2E-17 124.3 -0.2 233 66-359 79-312 (328)
80 1ogq_A PGIP-2, polygalacturona 99.3 2.8E-14 9.6E-19 130.9 -7.6 251 107-442 50-305 (313)
81 4glp_A Monocyte differentiatio 99.2 1.6E-12 5.4E-17 119.1 2.8 55 348-413 251-305 (310)
82 4glp_A Monocyte differentiatio 99.2 1.1E-12 3.7E-17 120.2 -0.1 57 296-362 252-308 (310)
83 1h6u_A Internalin H; cell adhe 99.2 4E-11 1.4E-15 109.5 10.0 103 348-468 129-231 (308)
84 1ozn_A Reticulon 4 receptor; N 99.2 4E-12 1.4E-16 115.0 2.8 86 320-414 152-237 (285)
85 1wwl_A Monocyte differentiatio 99.2 5.6E-13 1.9E-17 122.2 -3.1 159 192-362 149-310 (312)
86 2ra8_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 104.9 12.6 140 320-465 192-341 (362)
87 2ra8_A Uncharacterized protein 99.1 1.8E-10 6E-15 106.7 10.8 158 313-481 164-335 (362)
88 1h6u_A Internalin H; cell adhe 99.1 8.6E-11 2.9E-15 107.2 8.3 57 107-166 41-97 (308)
89 4ezg_A Putative uncharacterize 99.1 2.3E-10 7.9E-15 97.0 8.8 149 106-280 43-191 (197)
90 4ezg_A Putative uncharacterize 99.1 6.4E-11 2.2E-15 100.5 4.2 151 296-468 45-195 (197)
91 1io0_A Tropomodulin; LRR prote 99.0 4.3E-09 1.5E-13 87.9 14.1 130 312-470 27-167 (185)
92 1io0_A Tropomodulin; LRR prote 99.0 8.2E-09 2.8E-13 86.2 14.6 131 284-445 26-167 (185)
93 3rfs_A Internalin B, repeat mo 99.0 7.3E-11 2.5E-15 105.7 1.2 127 107-254 41-167 (272)
94 2je0_A Acidic leucine-rich nuc 99.0 2.7E-10 9.2E-15 91.9 3.7 86 190-278 62-148 (149)
95 2z62_A TOLL-like receptor 4, v 99.0 9.5E-11 3.3E-15 105.3 1.2 35 296-332 201-235 (276)
96 2z62_A TOLL-like receptor 4, v 99.0 1E-10 3.4E-15 105.2 1.1 207 107-363 28-239 (276)
97 1h6t_A Internalin B; cell adhe 99.0 3.1E-09 1.1E-13 96.0 10.7 144 105-279 66-209 (291)
98 1h6t_A Internalin B; cell adhe 98.9 5.7E-10 2E-14 100.8 5.8 127 319-468 88-214 (291)
99 1p9a_G Platelet glycoprotein I 98.9 1.7E-10 5.9E-15 104.2 1.1 201 151-414 7-207 (290)
100 2o6q_A Variable lymphocyte rec 98.9 1.8E-10 6.2E-15 103.1 0.2 86 319-413 131-216 (270)
101 2o6q_A Variable lymphocyte rec 98.9 4.2E-10 1.4E-14 100.7 2.0 105 107-227 37-143 (270)
102 1m9s_A Internalin B; cell inva 98.9 5E-09 1.7E-13 104.1 9.4 144 105-279 63-206 (605)
103 2ell_A Acidic leucine-rich nuc 98.9 5.5E-10 1.9E-14 92.1 1.8 15 106-120 23-37 (168)
104 3rfs_A Internalin B, repeat mo 98.8 4.7E-10 1.6E-14 100.5 1.0 181 130-362 39-219 (272)
105 2xwt_C Thyrotropin receptor; s 98.8 1.5E-09 5.1E-14 95.2 3.5 59 107-166 31-93 (239)
106 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2E-09 6.8E-14 68.8 2.9 40 3-45 10-49 (53)
107 3m19_A Variable lymphocyte rec 98.8 5E-10 1.7E-14 99.0 -1.0 138 319-469 57-194 (251)
108 1m9s_A Internalin B; cell inva 98.8 7.3E-09 2.5E-13 102.9 6.7 143 106-279 42-184 (605)
109 2je0_A Acidic leucine-rich nuc 98.8 2.5E-09 8.5E-14 86.1 2.5 105 348-462 42-148 (149)
110 3m19_A Variable lymphocyte rec 98.7 7.9E-09 2.7E-13 91.2 3.8 36 191-227 106-141 (251)
111 1xeu_A Internalin C; cellular 98.7 4.8E-08 1.6E-12 86.7 8.5 143 106-280 40-182 (263)
112 2xwt_C Thyrotropin receptor; s 98.7 6.1E-11 2.1E-15 104.1 -10.3 199 244-464 31-236 (239)
113 1a9n_A U2A', U2A'; complex (nu 98.6 1E-08 3.4E-13 85.1 3.2 15 106-120 18-32 (176)
114 1p9a_G Platelet glycoprotein I 98.6 7.4E-09 2.5E-13 93.4 2.4 175 107-305 31-205 (290)
115 2ell_A Acidic leucine-rich nuc 98.6 9.9E-09 3.4E-13 84.4 2.9 133 66-228 22-158 (168)
116 1pgv_A TMD-1, tropomodulin TMD 98.6 1.3E-06 4.4E-11 72.2 14.2 99 312-411 32-135 (197)
117 3cvr_A Invasion plasmid antige 98.6 1.6E-07 5.4E-12 92.3 9.4 32 192-228 80-111 (571)
118 1xeu_A Internalin C; cellular 98.6 6.1E-08 2.1E-12 86.0 5.8 147 64-255 37-183 (263)
119 2v9t_B SLIT homolog 2 protein 98.5 5.2E-08 1.8E-12 83.9 3.3 130 107-255 32-163 (220)
120 3e6j_A Variable lymphocyte rec 98.5 1.1E-07 3.9E-12 82.4 4.9 128 107-254 40-169 (229)
121 2v70_A SLIT-2, SLIT homolog 2 98.5 5E-08 1.7E-12 84.0 2.5 131 107-255 32-164 (220)
122 1ds9_A Outer arm dynein; leuci 98.4 1.8E-08 6.1E-13 85.4 -0.9 134 318-469 45-187 (198)
123 1pgv_A TMD-1, tropomodulin TMD 98.4 5.3E-06 1.8E-10 68.5 13.5 122 346-469 39-172 (197)
124 2o6s_A Variable lymphocyte rec 98.4 1.4E-07 4.8E-12 80.5 4.1 130 107-255 28-159 (208)
125 2o6s_A Variable lymphocyte rec 98.4 6.5E-08 2.2E-12 82.6 1.6 132 67-229 27-160 (208)
126 3sb4_A Hypothetical leucine ri 98.4 1E-07 3.5E-12 87.7 2.9 124 321-460 202-327 (329)
127 2v70_A SLIT-2, SLIT homolog 2 98.4 1.2E-07 3.9E-12 81.7 3.0 110 104-229 54-165 (220)
128 3e6j_A Variable lymphocyte rec 98.4 5.8E-08 2E-12 84.2 0.5 108 349-467 65-172 (229)
129 2xot_A Amphoterin-induced prot 98.4 9.9E-08 3.4E-12 89.0 1.9 106 108-228 40-147 (361)
130 3sb4_A Hypothetical leucine ri 98.3 4.9E-08 1.7E-12 89.9 -0.5 124 296-435 203-328 (329)
131 1a9n_A U2A', U2A'; complex (nu 98.3 4.7E-07 1.6E-11 74.9 5.4 82 66-166 17-100 (176)
132 2v9t_B SLIT homolog 2 protein 98.3 1.7E-07 5.7E-12 80.7 2.7 131 68-229 32-164 (220)
133 2xot_A Amphoterin-induced prot 98.2 3.9E-07 1.3E-11 85.0 3.0 109 105-228 62-174 (361)
134 4ay9_X Follicle-stimulating ho 98.2 3.2E-08 1.1E-12 92.0 -5.2 102 321-437 154-255 (350)
135 4ay9_X Follicle-stimulating ho 98.2 2.7E-07 9.1E-12 85.7 0.9 78 296-385 178-255 (350)
136 1ds9_A Outer arm dynein; leuci 98.2 3.3E-07 1.1E-11 77.5 0.9 104 131-254 47-150 (198)
137 1dce_A Protein (RAB geranylger 98.1 1.5E-06 5.1E-11 85.8 4.9 126 132-277 441-567 (567)
138 3cvr_A Invasion plasmid antige 98.1 1.2E-06 4.2E-11 86.1 4.1 111 107-254 80-190 (571)
139 1w8a_A SLIT protein; signaling 98.1 1.4E-06 4.7E-11 73.2 2.9 60 107-166 29-90 (192)
140 2wfh_A SLIT homolog 2 protein 98.0 4E-06 1.4E-10 70.3 4.5 14 107-120 31-44 (193)
141 2o6r_A Variable lymphocyte rec 98.0 4.5E-06 1.5E-10 69.0 4.3 13 107-119 28-40 (177)
142 1dce_A Protein (RAB geranylger 98.0 4E-06 1.4E-10 82.7 4.5 126 107-251 441-567 (567)
143 2wfh_A SLIT homolog 2 protein 97.9 9.6E-07 3.3E-11 74.1 -0.8 35 349-387 55-89 (193)
144 1w8a_A SLIT protein; signaling 97.8 4.5E-06 1.5E-10 70.0 1.8 87 104-205 51-139 (192)
145 3l2o_B F-box only protein 4; s 97.8 2.1E-06 7.3E-11 74.3 -0.3 41 3-46 6-46 (312)
146 2o6r_A Variable lymphocyte rec 97.8 1.5E-05 5.1E-10 65.8 4.5 125 109-255 9-135 (177)
147 2e31_A FBS1, F-box only protei 97.6 1.2E-05 4.1E-10 70.7 1.4 36 3-41 52-88 (297)
148 4b8c_D Glucose-repressible alc 97.5 2.9E-05 9.8E-10 79.2 2.9 105 130-255 222-327 (727)
149 4b8c_D Glucose-repressible alc 97.5 1.2E-05 4E-10 82.1 -0.9 105 319-438 222-326 (727)
150 3g39_A Variable lymphocyte rec 97.4 8E-05 2.7E-09 60.8 3.5 13 107-119 30-42 (170)
151 2r9u_A Variable lymphocyte rec 97.4 9E-05 3.1E-09 60.8 3.4 38 190-228 79-116 (174)
152 3g39_A Variable lymphocyte rec 97.4 0.0001 3.5E-09 60.2 3.4 54 109-166 11-66 (170)
153 4fs7_A Uncharacterized protein 97.3 6.2E-05 2.1E-09 71.0 1.5 54 105-162 69-125 (394)
154 3rw6_A Nuclear RNA export fact 97.2 0.001 3.4E-08 58.2 8.5 16 190-205 194-209 (267)
155 3rw6_A Nuclear RNA export fact 97.1 0.00051 1.8E-08 60.0 5.2 83 373-460 167-257 (267)
156 2r9u_A Variable lymphocyte rec 97.1 0.00034 1.1E-08 57.3 3.7 13 215-227 79-91 (174)
157 3v7d_B Cell division control p 97.1 0.00012 3.9E-09 70.7 0.9 36 3-41 16-51 (464)
158 1p22_A F-BOX/WD-repeat protein 96.8 0.00018 6.3E-09 68.7 -0.3 36 3-41 12-51 (435)
159 4fdw_A Leucine rich hypothetic 96.8 0.0012 4E-08 62.0 5.2 88 372-469 296-385 (401)
160 4fdw_A Leucine rich hypothetic 96.8 0.00023 7.9E-09 66.9 0.3 80 318-411 297-379 (401)
161 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.00043 1.5E-08 66.3 0.9 36 2-40 19-54 (445)
162 4fs7_A Uncharacterized protein 96.4 0.00055 1.9E-08 64.4 0.4 147 63-253 66-217 (394)
163 2ifg_A High affinity nerve gro 96.3 0.0019 6.4E-08 59.5 3.4 84 106-205 30-116 (347)
164 2ifg_A High affinity nerve gro 95.6 0.008 2.7E-07 55.2 3.9 62 130-205 29-93 (347)
165 4gt6_A Cell surface protein; l 88.3 0.39 1.3E-05 44.7 4.4 119 105-252 263-386 (394)
166 4gt6_A Cell surface protein; l 82.8 0.91 3.1E-05 42.2 3.9 124 63-225 260-386 (394)
167 4h09_A Hypothetical leucine ri 76.4 1.6 5.6E-05 40.1 3.4 34 130-163 215-249 (379)
168 4h09_A Hypothetical leucine ri 73.8 1.9 6.6E-05 39.6 3.2 124 105-253 215-342 (379)
169 3rfe_A Platelet glycoprotein I 65.6 6.8 0.00023 29.5 4.1 12 192-203 55-66 (130)
170 3rfe_A Platelet glycoprotein I 60.7 10 0.00035 28.5 4.3 14 374-387 53-66 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=5.2e-42 Score=345.90 Aligned_cols=446 Identities=16% Similarity=0.212 Sum_probs=334.0
Q ss_pred ccchHHHHHHHHhcC-CCCCCCCchhhhhhhHHHHHHHhcccccceeeecCCCchhhhHHHhhcCCCCeeEeeeeecccc
Q 037505 3 NMLCDELLQEIFTKL-PTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSE 81 (483)
Q Consensus 3 ~~LP~eil~~If~~L-~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 81 (483)
..||+|+|.+||+|| +.+ |+.++++|||+|+.+....+..+.+ ...+...+..++++++++++|+++.....
T Consensus 14 ~~LPdeil~~I~~~L~~~~---d~~~~s~vck~W~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 86 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPK---DRDSASLVCRRWFKIDSETREHVTM----ALCYTATPDRLSRRFPNLRSLKLKGKPRA 86 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHH---HHHHHTTSCHHHHHHHHHHCCEEEE----SCGGGSCHHHHHHHCTTCSEEEEECSCGG
T ss_pred CCCCHHHHHHHHHhcCCHH---HHHHHHHHhHHHHHhhhccccEEEE----eeccccChHHHHHhCCCCeEEEecCCcch
Confidence 469999999999999 777 9999999999999996554443333 23334446778889999999999721110
Q ss_pred ---cccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCc-CcEEeccCchhh---HH-HHHhcC
Q 037505 82 ---STATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNH-LTSLTVSLSRPL---YF-NWVASF 153 (483)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~---~~-~~l~~~ 153 (483)
..++ .........++..+...+++|++|+++++.+++..+..+...+++ |++|++.+|... .. .....|
T Consensus 87 ~~~~~~~---~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 163 (592)
T 3ogk_B 87 AMFNLIP---ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC 163 (592)
T ss_dssp GGGTCSC---TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHC
T ss_pred hhccccc---ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhC
Confidence 0000 012233445777787789999999999998888888888876776 999999988743 22 334589
Q ss_pred CCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCC---hhHHHHHHHhCCCccEEecCCCCCC
Q 037505 154 SCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSE---DTGVGWLWRSCKRLKKLQLKSCSGI 230 (483)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~l~~~~~~ 230 (483)
++|++|++.+|.+.+.. ..........+++|++|+++++.++ ...+..+...+++|+.|++++|...
T Consensus 164 ~~L~~L~L~~~~~~~~~----------~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKD----------GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCSEEECTTCEEECCC----------SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCCEEECccccccCcc----------hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 99999999998753221 1112223345566777777666553 4455555566666666666654311
Q ss_pred C----------------------------------------------chhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505 231 G----------------------------------------------DGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN 264 (483)
Q Consensus 231 ~----------------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 264 (483)
. .....+.....+++|++|++++|. +++..+..
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~ 312 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCT 312 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHH
Confidence 0 001112223345799999999987 77888878
Q ss_pred HHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccC----------CCCCCHHHHHHHHHcCCCCcEEEccCCCcc
Q 037505 265 LAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRL----------PLDLNNVHLSAVAVKFRGLSVLRLQSCCLV 334 (483)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 334 (483)
+...+++|+.|++.++....++..+...++ +|++|++++ |+.+++.++..+...+++|++|.+ +|..+
T Consensus 313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp HHTTCTTCCEEEEEGGGHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred HHHhCcCCCEEeccCccCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 888999999999996666777777777777 899999995 889999999988888999999999 45678
Q ss_pred ChhhHHHHHHhcCCCCcEEecccc---ccccCc--chhHHHHHhcCCCCCEEecCCCc-CCCHHHHHHHHhcCCCCCEEE
Q 037505 335 SGDGLKALGVAMSSGLEELALINC---DVVDRE--PGLLASLGQNLKQLRKLDLSYNE-MLLDKEFMAMLVSCNYLTELK 408 (483)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~ 408 (483)
++.++..+...+ ++|+.|+++++ ...+.. ...+..+...+++|++|++++|. .+++..+..+...+++|+.|+
T Consensus 391 ~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 391 TNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred cHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 988888877544 49999999743 233321 01155667789999999998765 478999999888899999999
Q ss_pred ecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHHHHHHH
Q 037505 409 LRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWA 474 (483)
Q Consensus 409 l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~~ 474 (483)
+++|. +++.++..+...|++|++|++++|. +++.++..+...+++|+.|++++|++++.+....
T Consensus 470 L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 470 LGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp ECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred ccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 99886 9999999988999999999999998 8998888888899999999999999999854443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=9.2e-41 Score=337.02 Aligned_cols=449 Identities=20% Similarity=0.234 Sum_probs=326.7
Q ss_pred cccchHHHHHHHHhcCC-CCCCCCchhhhhhhHHHHHHHhcccccceeeecCCCchhhhHHHhhcCCCCeeEeeeeeccc
Q 037505 2 ENMLCDELLQEIFTKLP-TTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSS 80 (483)
Q Consensus 2 ~~~LP~eil~~If~~L~-~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 80 (483)
-+.||+|+|.+||+||+ .+ |+.++++|||+|+++....+. .+++... +......++.+++++++++++....
T Consensus 6 ~~~LPdevL~~If~~L~~~~---d~~~~s~vck~W~~~~~~~~~--~l~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~ 78 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDK---DRNSVSLVCKSWYEIERWCRR--KVFIGNC--YAVSPATVIRRFPKVRSVELKGKPH 78 (594)
T ss_dssp ----CHHHHHHHHHTCCCHH---HHHHHHTSCHHHHHHHHHHCC--EEEESST--TSSCHHHHHHHCTTCCEEEEECSCG
T ss_pred hhhCCHHHHHHHHhhcCCch---hHHHHHHHHHHHHHhhhhhce--EEeeccc--cccCHHHHHhhCCCceEEeccCCCc
Confidence 36899999999999999 77 999999999999999544333 3333222 2223456778999999999983111
Q ss_pred ccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh---HH-HHHhcCCCc
Q 037505 81 ESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL---YF-NWVASFSCL 156 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~-~~l~~~~~L 156 (483)
.....-...........++..+...+++|++|+++++.+++..+..+...+++|++|++.+|..+ .. .....+++|
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 10000000001122334677777789999999999999999999999878999999999998533 23 344589999
Q ss_pred ceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCc--CChhHHHHHHHhCCCccEEecCCCCCCC---
Q 037505 157 KELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIR--SEDTGVGWLWRSCKRLKKLQLKSCSGIG--- 231 (483)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~--- 231 (483)
++|++.+|.+.+.. ..........+++|++|+++++. +++..+..+...+++|+.|++++|..+.
T Consensus 159 ~~L~L~~~~i~~~~----------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 159 KELDLRESDVDDVS----------GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp CEEECTTCEEECCC----------GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred CEEeCcCCccCCcc----------hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 99999998753322 11122223455667777776664 4555566655566666666666552110
Q ss_pred -------------------------------------------------chhHHHHHhhccCCCcEEeCCCCCCCcHHHH
Q 037505 232 -------------------------------------------------DGGSFANFVKCSQGLEEVKLRTCRSIVDVVL 262 (483)
Q Consensus 232 -------------------------------------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 262 (483)
...+ ......+++|++|++++|. +++..+
T Consensus 229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-l~~~~l 306 (594)
T 2p1m_B 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYAT-VQSYDL 306 (594)
T ss_dssp HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGG-GGGHHHHTTCCEEECTTCC-CCHHHH
T ss_pred HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhH-HHHHHhhCCCCEEEccCCC-CCHHHH
Confidence 0011 1111235899999999987 788888
Q ss_pred HHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeec--------cCCCCCCHHHHHHHHHcCCCCcEEEccCCCcc
Q 037505 263 LNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDL--------RLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLV 334 (483)
Q Consensus 263 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 334 (483)
..+...+++|++|++.++....++..+...++ +|++|++ .+++.+++.++..+...+++|++|.+ +|..+
T Consensus 307 ~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l 384 (594)
T 2p1m_B 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK-DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQM 384 (594)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT-TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCC
T ss_pred HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC-CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCc
Confidence 88888999999999998866566666666666 8999999 45678899999988888999999965 45678
Q ss_pred ChhhHHHHHHhcCCCCcEEecc-----ccccccCc--chhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEE
Q 037505 335 SGDGLKALGVAMSSGLEELALI-----NCDVVDRE--PGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTEL 407 (483)
Q Consensus 335 ~~~~~~~~~~~~~~~L~~L~l~-----~~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L 407 (483)
++.++..+...+ ++|+.|+++ +|...+.. ...+..+...+++|++|++++ .+++.++..+...+++|+.|
T Consensus 385 ~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 385 TNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEe
Confidence 888888776544 599999999 34443321 112566677899999999977 58999999888779999999
Q ss_pred EecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHHHHHHHhc
Q 037505 408 KLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDVVRTWASQ 476 (483)
Q Consensus 408 ~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~~~~ 476 (483)
++++|. +++.++..+...+++|++|++++|.. ++.++..+...+++|+.|++++|.+++++.+...+
T Consensus 462 ~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 462 SVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp EEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred eccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 999987 89999998888899999999999875 88888888878999999999999999886655533
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.1e-28 Score=248.57 Aligned_cols=263 Identities=20% Similarity=0.243 Sum_probs=206.7
Q ss_pred ccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhh
Q 037505 189 DTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAEN 268 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 268 (483)
..+++|+.|.++++. ...+..+...+++|++|++++|. +++..+... ...+++|++|++. ..+.+..+..+...
T Consensus 267 ~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~L~--~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLETR--NVIGDRGLEVLAQY 340 (592)
T ss_dssp CCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEEEE--GGGHHHHHHHHHHH
T ss_pred hccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEecc--CccCHHHHHHHHHh
Confidence 344556666665542 23344455678899999999987 666555443 3455999999998 35678888999999
Q ss_pred CCCCCeEEeec----------C--CChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccC---CCc
Q 037505 269 CDSLNSLLVYD----------G--CSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQS---CCL 333 (483)
Q Consensus 269 ~~~L~~L~l~~----------~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~---~~~ 333 (483)
|++|++|++.+ + .+..++......++ +|++|++. ++.+++..+..+...+++|++|++++ |+.
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 99999999994 2 35566777777776 99999994 57899999999988899999999974 556
Q ss_pred cCh----hhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEe
Q 037505 334 VSG----DGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKL 409 (483)
Q Consensus 334 ~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l 409 (483)
+++ .++..+... +++|+.|+++.|...-. ...+..+...+++|++|++++|. +++.++..++..+++|++|++
T Consensus 419 l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLT-DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCC-HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEE
T ss_pred ccCchHHHHHHHHHHh-CCCCCEEEEecCCCCcc-HHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeec
Confidence 765 356666554 45999999987653111 12266677789999999999987 899889988889999999999
Q ss_pred cCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeecc
Q 037505 410 RGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDEN 464 (483)
Q Consensus 410 ~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~ 464 (483)
++|. +++.++..+...+++|++|++++|. +++.++..+...+|.+....+..+
T Consensus 496 ~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 496 RGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 9998 8999999888889999999999987 899988888888998887766654
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2.5e-28 Score=246.12 Aligned_cols=377 Identities=19% Similarity=0.293 Sum_probs=254.8
Q ss_pred HHHhhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCC-ccchhHHHHHHHhCCcCcEEe
Q 037505 60 VSSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAG-PVSVSSLLSLSEACNHLTSLT 138 (483)
Q Consensus 60 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~ 138 (483)
+..+..++++|++|+++ ...+.+..+..+.+.+++|++|++.+| .++..++..+...|++|++|+
T Consensus 97 l~~l~~~~~~L~~L~L~--------------~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLK--------------RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp HHHHHHHCTTCCEEEEE--------------SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCeEEee--------------CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 34445566667777766 334555566656555667777777666 566666666666666666666
Q ss_pred ccCch--hhHHHHH----hcCCCcceEeccccccccccchhhhc-------cCC-------CCCcchhccccCCCceEEE
Q 037505 139 VSLSR--PLYFNWV----ASFSCLKELSVYACDADEVENEVFRR-------YGE-------TGLCSNEEIDTVLGLESLC 198 (483)
Q Consensus 139 l~~~~--~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~L~~L~ 198 (483)
+++|. .....++ ..+++|++|++.++. ..+..+.+.. ... ...........+++|++|.
T Consensus 163 L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp CTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred CcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 66654 1111111 244566666665553 0010000000 000 0000111112233344443
Q ss_pred ccCCc-----------------------------CChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEE
Q 037505 199 LSGIR-----------------------------SEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEV 249 (483)
Q Consensus 199 l~~~~-----------------------------~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L 249 (483)
+..+. .....+..+...+++|++|++++|. +++.++... ...+++|++|
T Consensus 242 l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~-~~~~~~L~~L 319 (594)
T 2p1m_B 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKL-LCQCPKLQRL 319 (594)
T ss_dssp CSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHH-HTTCTTCCEE
T ss_pred cccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHH-HhcCCCcCEE
Confidence 32211 1223344444567899999999887 666554433 3445999999
Q ss_pred eCCCCCCCcHHHHHHHHhhCCCCCeEEeec----------CCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHc
Q 037505 250 KLRTCRSIVDVVLLNLAENCDSLNSLLVYD----------GCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVK 319 (483)
Q Consensus 250 ~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 319 (483)
++.+| +.+..+..+...+++|++|++.+ ..+..++..+...++ +|++|.+. |+.+++..+..+...
T Consensus 320 ~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~~-~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 320 WVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLYF-CRQMTNAALITIARN 395 (594)
T ss_dssp EEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEEE-ESCCCHHHHHHHHHH
T ss_pred eCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch-hHHHHHHh-cCCcCHHHHHHHHhh
Confidence 99987 67788888888999999999943 225566666666676 89999665 478999999888888
Q ss_pred CCCCcEEEcc-----CCCccC----hhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCC
Q 037505 320 FRGLSVLRLQ-----SCCLVS----GDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLL 390 (483)
Q Consensus 320 ~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 390 (483)
+++|++|+++ +|..++ +.++..+...+ ++|+.|++++ ..... .+..+...+++|+.|++++|. ++
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~L~~L~L~~-~l~~~---~~~~l~~~~~~L~~L~L~~~~-i~ 469 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC-KDLRRLSLSG-LLTDK---VFEYIGTYAKKMEMLSVAFAG-DS 469 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC-TTCCEEECCS-SCCHH---HHHHHHHHCTTCCEEEEESCC-SS
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhC-CCccEEeecC-cccHH---HHHHHHHhchhccEeeccCCC-Cc
Confidence 9999999999 677788 66777665544 4999999977 33332 256666679999999999998 89
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccC
Q 037505 391 DKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENK 465 (483)
Q Consensus 391 ~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~ 465 (483)
+.++..++..+++|+.|++++|+ +++.++..+...+++|+.|++++|+. ++.++..+...+|+|+...+..+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecCCC
Confidence 99998888889999999999998 59988888888899999999999975 899999988899999877776554
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.6e-26 Score=220.73 Aligned_cols=392 Identities=15% Similarity=0.149 Sum_probs=283.3
Q ss_pred eeecCCCchhhhHHHhhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHH---HhcCCCCceEEccCCccchhHH
Q 037505 48 LRIIPDNSMVFSVSSLLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVV---SSSCSNLKHLRFSAGPVSVSSL 124 (483)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l 124 (483)
+++............++..++++++|+++ ...+.+.....+ ...+++|++|++++|.+++.+.
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~--------------~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLD--------------DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEE--------------SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEcc--------------CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH
Confidence 44444444444456667788999999998 445665544333 3447999999999999988888
Q ss_pred HHHHHhCC----cCcEEeccCchh------hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCc
Q 037505 125 LSLSEACN----HLTSLTVSLSRP------LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGL 194 (483)
Q Consensus 125 ~~l~~~~~----~L~~L~l~~~~~------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 194 (483)
..+...++ +|++|+++++.- .....+..+++|++|++++|.+......... .......++|
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~---------~~l~~~~~~L 144 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC---------EGLLDPQCRL 144 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH---------HHHTSTTCCC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH---------HHHhcCCCcc
Confidence 88888787 799999998862 2467788999999999999876322100000 0111234579
Q ss_pred eEEEccCCcCChhHH---HHHHHhCCCccEEecCCCCCCCchhHHHH---HhhccCCCcEEeCCCCCCCcHH---HHHHH
Q 037505 195 ESLCLSGIRSEDTGV---GWLWRSCKRLKKLQLKSCSGIGDGGSFAN---FVKCSQGLEEVKLRTCRSIVDV---VLLNL 265 (483)
Q Consensus 195 ~~L~l~~~~~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~---~l~~~ 265 (483)
++|++++|.+++.+. ...+..+++|+.|+++++. +++.+.... +....++|++|++++|. +++. .+...
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 222 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGI 222 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHH
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHH
Confidence 999999999876553 4445668999999999876 555443322 22345699999999875 4433 34555
Q ss_pred HhhCCCCCeEEeecCCChh-HHHHHHHh---ccccccEeeccCCCCCCHHHHHHH---HHcCCCCcEEEccCCCccChhh
Q 037505 266 AENCDSLNSLLVYDGCSRE-GLLQFISH---CRCNLQKLDLRLPLDLNNVHLSAV---AVKFRGLSVLRLQSCCLVSGDG 338 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~-~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~ 338 (483)
...+++|++|+++++.... +...+... ..++|++|++++| .+++.+...+ ...+++|++|+++++ .+++.+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 300 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEG 300 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHH
Confidence 6679999999998776433 33333221 2248999999995 7887764444 345899999999986 577777
Q ss_pred HHHHHHhc---CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhc----CCCCCEEEecC
Q 037505 339 LKALGVAM---SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVS----CNYLTELKLRG 411 (483)
Q Consensus 339 ~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~~L~~L~l~~ 411 (483)
...+.... .++|++|++++|.........+......+++|++|++++|. +++.++..+... .++|++|++++
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCC
Confidence 76666432 25999999999998776544455566678999999999996 788777766542 67999999999
Q ss_pred CCCCCHHHHHHHH---hcCCCCCEEeccCCCCCChHHHHHHHHcCC----CCcEEEeeccCCcHH
Q 037505 412 CKGLTSMAVVSMS---KSCKRLQTVDIMHCCRVGAEAVELFVLNSP----QLRRVEVDENKLSDV 469 (483)
Q Consensus 412 ~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~----~L~~L~l~~~~i~~~ 469 (483)
|. +++.++..+. ..+++|++|++++| .+++.++..+.+.++ +|+.|++.++.....
T Consensus 380 n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 380 CD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp SC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 86 8886655543 45899999999995 589998888876654 599999888777665
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.6e-26 Score=221.66 Aligned_cols=373 Identities=18% Similarity=0.208 Sum_probs=270.7
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHH---HHHHhCCcCcEEeccCchh
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLL---SLSEACNHLTSLTVSLSRP 144 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~ 144 (483)
+.+++|+++ +..+.+.....+...+++|++|++++|.+++.+.. .....+++|++|+++++.-
T Consensus 3 ~~l~~L~Ls--------------~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQ--------------CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEEE--------------SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred ccceehhhh--------------hcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 578899998 66677777776667789999999999988876544 4445679999999998762
Q ss_pred --hHHHHH-hcCC----CcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHh--
Q 037505 145 --LYFNWV-ASFS----CLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRS-- 215 (483)
Q Consensus 145 --~~~~~l-~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~-- 215 (483)
.....+ ..++ +|++|++.+|.+..... .........+++|++|++++|.+++.+...+...
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC----------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH----------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH----------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 233333 3455 79999999997732210 1122334577899999999999988777766554
Q ss_pred --CCCccEEecCCCCCCCchhHHH--HHhhccCCCcEEeCCCCCCCcHHHHHHHHh----hCCCCCeEEeecCCCh-h--
Q 037505 216 --CKRLKKLQLKSCSGIGDGGSFA--NFVKCSQGLEEVKLRTCRSIVDVVLLNLAE----NCDSLNSLLVYDGCSR-E-- 284 (483)
Q Consensus 216 --~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~-~-- 284 (483)
.++|++|++++|. ++..+... .....+++|++|+++++. +.+.....+.. ..++|++|+++++... .
T Consensus 139 ~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred cCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 4579999999885 55443221 223345899999999865 66666655554 3569999999877633 2
Q ss_pred -HHHHHHHhccccccEeeccCCCCCCHHHHHHHHH----cCCCCcEEEccCCCccChhhHHHHHH--hcCCCCcEEeccc
Q 037505 285 -GLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAV----KFRGLSVLRLQSCCLVSGDGLKALGV--AMSSGLEELALIN 357 (483)
Q Consensus 285 -~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~ 357 (483)
.+...+..++ +|++|+++++ .+++.++..+.. .+++|++|++++| .+++.+...+.. ...++|++|++++
T Consensus 217 ~~l~~~l~~~~-~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 217 RDLCGIVASKA-SLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHCT-TCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHhCC-CccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 3455566665 8999999984 777777666553 4789999999997 578877655542 2346999999999
Q ss_pred cccccCcchhHHHH-HhcCCCCCEEecCCCcCCCHHHH---HHHHhcCCCCCEEEecCCCCCCHHHHHHHHhc----CCC
Q 037505 358 CDVVDREPGLLASL-GQNLKQLRKLDLSYNEMLLDKEF---MAMLVSCNYLTELKLRGCKGLTSMAVVSMSKS----CKR 429 (483)
Q Consensus 358 ~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~ 429 (483)
|.....+...+... ....++|++|++++|. +++.+. ...+..+++|++|++++|. +++.+...+... .++
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCc
Confidence 98765432222222 2234799999999998 666543 3444578999999999985 888887766653 579
Q ss_pred CCEEeccCCCCCChHHHHHHH---HcCCCCcEEEeeccCCcHHHHH
Q 037505 430 LQTVDIMHCCRVGAEAVELFV---LNSPQLRRVEVDENKLSDVVRT 472 (483)
Q Consensus 430 L~~L~l~~c~~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~ 472 (483)
|++|++++| .+++.++..+. ..+++|+.|++++|.+++.+..
T Consensus 372 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 372 LRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp CCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHH
T ss_pred eEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHH
Confidence 999999997 57886655443 4699999999999999998433
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=3e-27 Score=220.66 Aligned_cols=289 Identities=22% Similarity=0.251 Sum_probs=162.7
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcccccceeeecCCCchhhhHHHhhcCC--CCeeEeeeeeccc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSLSLRIIPDNSMVFSVSSLLSNY--PFVSSLSVALSSS 80 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~l~~~~~ 80 (483)
+.||+|++.+||+||+.+ |+.+++.|||+|+++......+..+++....... ..+.++ +.++.+++.
T Consensus 10 ~~LP~eil~~If~~L~~~---d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~---- 78 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLP---ELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCP---- 78 (336)
T ss_dssp SSSCHHHHHHHHTTSCHH---HHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH----HHHHHHHHTTCSEEECT----
T ss_pred hhCCHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHhcCchhheeeccccccCCH----HHHHhhhhccceEEEcC----
Confidence 679999999999999999 9999999999999997654445555544433222 122222 566666665
Q ss_pred ccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcce
Q 037505 81 ESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKE 158 (483)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~ 158 (483)
...+...... ...+++|++|++++|.++..++......+++|++|+++++.- ..+..+..+++|++
T Consensus 79 ----------~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 79 ----------RSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp ----------TCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ----------Cccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 2121111100 113567777777777666655665555666666666666531 13344444555555
Q ss_pred EeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHH
Q 037505 159 LSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFAN 238 (483)
Q Consensus 159 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 238 (483)
|++.+|. .+++.++..++..+++|++|++++|..+++.++...
T Consensus 147 L~L~~~~-------------------------------------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 147 LNLSGCS-------------------------------------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp EECTTCB-------------------------------------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred EECCCCC-------------------------------------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 5544431 345555666666677777777777644555443333
Q ss_pred HhhccC-CCcEEeCCCCC-CCcHHHHHHHHhhCCCCCeEEeecCC-ChhHHHHHHHhccccccEeeccCCCCCCHHHHHH
Q 037505 239 FVKCSQ-GLEEVKLRTCR-SIVDVVLLNLAENCDSLNSLLVYDGC-SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSA 315 (483)
Q Consensus 239 ~~~~~~-~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 315 (483)
+.. ++ +|++|++++|. .+++..+......+++|+.|+++++. ........+...+ +|++|++++|..+.+..+..
T Consensus 190 ~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 190 VAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGG
T ss_pred HHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHH
Confidence 333 35 77777777765 45556666666666666666665443 1111111222232 55666665554444443322
Q ss_pred HHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccc
Q 037505 316 VAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDV 360 (483)
Q Consensus 316 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (483)
+. .+++|++|++++| +++.++..+.. .++.|+++++..
T Consensus 268 l~-~~~~L~~L~l~~~--i~~~~~~~l~~----~l~~L~l~~n~l 305 (336)
T 2ast_B 268 LG-EIPTLKTLQVFGI--VPDGTLQLLKE----ALPHLQINCSHF 305 (336)
T ss_dssp GG-GCTTCCEEECTTS--SCTTCHHHHHH----HSTTSEESCCCS
T ss_pred Hh-cCCCCCEEeccCc--cCHHHHHHHHh----hCcceEEecccC
Confidence 22 2566666666655 55555554431 244444544443
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=6.1e-21 Score=178.67 Aligned_cols=303 Identities=13% Similarity=0.141 Sum_probs=172.0
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
++|++|++.++.+.... . ...+++|++|+++++.-.....+..+++|++|++.+|.+..+ +
T Consensus 44 ~~L~~L~l~~~~i~~~~--~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~----------------~ 104 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ--G-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI----------------S 104 (347)
T ss_dssp TTCSEEECCSSCCCCCT--T-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC----------------G
T ss_pred ccccEEEEeCCccccch--h-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc----------------h
Confidence 45555555555332211 1 123555555555554321111155556666666665544211 1
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
....+++|++|++++|.+..... ...+++|+.|+++++......+. ...+++|++|+++++....... .
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~----~ 173 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTP----I 173 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGG----G
T ss_pred HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchh----h
Confidence 12345566666666665543221 34566666666666543333221 2333566666666554221111 3
Q ss_pred hhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhc
Q 037505 267 ENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAM 346 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 346 (483)
..+++|+.|+++++....- .. +...+ +|+.|+++++ .+..... ...+++|++|+++++. +++... ...
T Consensus 174 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~-~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~----~~~ 241 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDI-SP-LASLT-SLHYFTAYVN-QITDITP---VANMTRLNSLKIGNNK-ITDLSP----LAN 241 (347)
T ss_dssp GGCTTCSEEECTTSCCCCC-GG-GGGCT-TCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG----GTT
T ss_pred ccCCCCCEEEccCCccccc-cc-ccCCC-ccceeecccC-CCCCCch---hhcCCcCCEEEccCCc-cCCCcc----hhc
Confidence 4566666666654431110 00 22333 7788888774 3332111 3458899999998874 443322 224
Q ss_pred CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhc
Q 037505 347 SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKS 426 (483)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 426 (483)
.++|++|++++|...... ....+++|++|++++|. +++. ..+..+++|+.|++++|. +++.....+ ..
T Consensus 242 l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~ 309 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGSNQ-ISDI---SVLNNLSQLNSLFLNNNQ-LGNEDMEVI-GG 309 (347)
T ss_dssp CTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCGGGHHHH-HT
T ss_pred CCCCCEEECCCCccCCCh------hHhcCCCcCEEEccCCc-cCCC---hhhcCCCCCCEEECcCCc-CCCcChhHh-hc
Confidence 569999999998766531 13468999999999986 4542 224578999999999986 665554443 45
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCc
Q 037505 427 CKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 427 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
+++|++|++++|. ++.... ...+++|+.|++++|.++
T Consensus 310 l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCc-cccccC---hhhhhccceeehhhhccc
Confidence 8999999999976 443322 357999999999999876
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=6.6e-20 Score=170.81 Aligned_cols=258 Identities=17% Similarity=0.239 Sum_probs=183.4
Q ss_pred ceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCC
Q 037505 194 LESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLN 273 (483)
Q Consensus 194 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 273 (483)
+++++++++.+.+..+..+. .++++.|++.++. +..... . ...+++|++|+++++. +.+..+......+++|+
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n~-l~~~~~--~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRSF-MDQPLA--E-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHH--HTTCSEEECTTCE-ECSCCC--S-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred heeeccccccCCHHHHHhhh--hccceEEEcCCcc-ccccch--h-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence 45556666555543333221 2677788776643 211110 1 1234788888888764 56666777778888888
Q ss_pred eEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCC-CCcE
Q 037505 274 SLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSS-GLEE 352 (483)
Q Consensus 274 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~ 352 (483)
+|+++++.........+..++ +|++|++++|..+++..+..+...+++|++|++++|..+++.++..... ..+ +|++
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~-~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~ 199 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQ 199 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCE
T ss_pred EEeCcCcccCHHHHHHHhcCC-CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCE
Confidence 888887765555555566655 8999999987788887777777789999999999986678776655543 345 9999
Q ss_pred Eecccccc-ccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCC
Q 037505 353 LALINCDV-VDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQ 431 (483)
Q Consensus 353 L~l~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~ 431 (483)
|++++|.. ..+ ..+......+++|++|++++|..+++..+..+ ..+++|++|++++|..+++.++..+ ..+++|+
T Consensus 200 L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~ 275 (336)
T 2ast_B 200 LNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLK 275 (336)
T ss_dssp EECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG-GGCTTCC
T ss_pred EEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCC
Confidence 99999852 221 11555667899999999999986777666655 4789999999999987887766444 4489999
Q ss_pred EEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 432 TVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 432 ~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+|++++| +++.++..+...+++|+ +++|.++..
T Consensus 276 ~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~l~~~ 308 (336)
T 2ast_B 276 TLQVFGI--VPDGTLQLLKEALPHLQ---INCSHFTTI 308 (336)
T ss_dssp EEECTTS--SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred EEeccCc--cCHHHHHHHHhhCcceE---EecccCccc
Confidence 9999998 88888888776676665 788877764
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=4.2e-20 Score=172.93 Aligned_cols=303 Identities=16% Similarity=0.123 Sum_probs=209.9
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL 145 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 145 (483)
.++.+++++++ ...+.+- .. ...+++|++|++++|.++.... ...+++|++|+++++.-.
T Consensus 42 ~l~~L~~L~l~--------------~~~i~~~--~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~ 101 (347)
T 4fmz_A 42 ELESITKLVVA--------------GEKVASI--QG-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKIT 101 (347)
T ss_dssp HHTTCSEEECC--------------SSCCCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred hcccccEEEEe--------------CCccccc--hh-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCccc
Confidence 56889999987 2222221 11 2347999999999996654332 347899999999988633
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
....+..+++|++|++.+|.+..++ ....+++|+.|++++|..... +.. ...+++|+.|+++
T Consensus 102 ~~~~~~~l~~L~~L~l~~n~i~~~~----------------~~~~l~~L~~L~l~~n~~~~~-~~~-~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 102 DISALQNLTNLRELYLNEDNISDIS----------------PLANLTKMYSLNLGANHNLSD-LSP-LSNMTGLNYLTVT 163 (347)
T ss_dssp CCGGGTTCTTCSEEECTTSCCCCCG----------------GGTTCTTCCEEECTTCTTCCC-CGG-GTTCTTCCEEECC
T ss_pred CchHHcCCCcCCEEECcCCcccCch----------------hhccCCceeEEECCCCCCccc-ccc-hhhCCCCcEEEec
Confidence 3456889999999999998773322 145778999999999853211 111 4678999999999
Q ss_pred CCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCC
Q 037505 226 SCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLP 305 (483)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (483)
++....... ...+++|++|+++++....... ...+++|+.|+++++....... +..++ +|++|+++++
T Consensus 164 ~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~~~-~L~~L~l~~n 231 (347)
T 4fmz_A 164 ESKVKDVTP-----IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNN 231 (347)
T ss_dssp SSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECCSS
T ss_pred CCCcCCchh-----hccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCCCch--hhcCC-cCCEEEccCC
Confidence 876433222 3455899999999875322111 5678999999998664221111 34444 8999999985
Q ss_pred CCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCC
Q 037505 306 LDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSY 385 (483)
Q Consensus 306 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 385 (483)
.+..... ...+++|++|+++++. +++.. .+ ...++|+.|++++|...... ....+++|++|++++
T Consensus 232 -~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~~--~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 232 -KITDLSP---LANLSQLTWLEIGTNQ-ISDIN--AV--KDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp -CCCCCGG---GTTCTTCCEEECCSSC-CCCCG--GG--TTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCS
T ss_pred -ccCCCcc---hhcCCCCCEEECCCCc-cCCCh--hH--hcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcC
Confidence 3433221 3568999999999974 44421 12 24569999999999776631 245789999999999
Q ss_pred CcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 037505 386 NEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCC 439 (483)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~ 439 (483)
|. +++.....+ ..+++|+.|++++|. +++... ...+++|++|++++|+
T Consensus 297 n~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 297 NQ-LGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp SC-CCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred Cc-CCCcChhHh-hccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 97 665544444 479999999999997 554222 4568999999999964
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=7.4e-20 Score=178.11 Aligned_cols=326 Identities=15% Similarity=0.165 Sum_probs=209.4
Q ss_pred hcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch
Q 037505 64 LSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR 143 (483)
Q Consensus 64 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 143 (483)
+..+++|++|+++ ...+.+..- ...+++|++|+++++.+..... ...+++|++|+++++.
T Consensus 64 ~~~l~~L~~L~Ls--------------~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 64 VEYLNNLTQINFS--------------NNQLTDITP---LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp GGGCTTCCEEECC--------------SSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred hhhhcCCCEEECC--------------CCccCCchh---hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCC
Confidence 4567888888887 223322211 2447888888888885543322 3368888888888875
Q ss_pred hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEe
Q 037505 144 PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQ 223 (483)
Q Consensus 144 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 223 (483)
-.....+..+++|++|++.+|.+..++ ....+++|+.|+++++...... ...+++|+.|+
T Consensus 124 l~~~~~~~~l~~L~~L~l~~n~l~~~~----------------~~~~l~~L~~L~l~~~~~~~~~----~~~l~~L~~L~ 183 (466)
T 1o6v_A 124 ITDIDPLKNLTNLNRLELSSNTISDIS----------------ALSGLTSLQQLSFGNQVTDLKP----LANLTTLERLD 183 (466)
T ss_dssp CCCCGGGTTCTTCSEEEEEEEEECCCG----------------GGTTCTTCSEEEEEESCCCCGG----GTTCTTCCEEE
T ss_pred CCCChHHcCCCCCCEEECCCCccCCCh----------------hhccCCcccEeecCCcccCchh----hccCCCCCEEE
Confidence 332233778888888888888763221 2356678888888643222211 35678888888
Q ss_pred cCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeecc
Q 037505 224 LKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLR 303 (483)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 303 (483)
++++. +...+ . ...+++|++|+++++....... ...+++|+.|+++++.... + ..+..++ +|++|+++
T Consensus 184 l~~n~-l~~~~---~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~l~ 251 (466)
T 1o6v_A 184 ISSNK-VSDIS---V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I-GTLASLT-NLTDLDLA 251 (466)
T ss_dssp CCSSC-CCCCG---G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C-GGGGGCT-TCSEEECC
T ss_pred CcCCc-CCCCh---h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c-hhhhcCC-CCCEEECC
Confidence 88765 33321 1 2344788888888765322111 4457888888887654221 1 1233333 88999998
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEec
Q 037505 304 LPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDL 383 (483)
Q Consensus 304 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L 383 (483)
++. +..... ...+++|++|+++++. ++.... + ...++|+.|++++|....... ...+++|+.|++
T Consensus 252 ~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--~--~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L 316 (466)
T 1o6v_A 252 NNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNISP--L--AGLTALTNLELNENQLEDISP------ISNLKNLTYLTL 316 (466)
T ss_dssp SSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGG--G--TTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEEC
T ss_pred CCc-cccchh---hhcCCCCCEEECCCCc-cCcccc--c--cCCCccCeEEcCCCcccCchh------hcCCCCCCEEEC
Confidence 853 332111 3458899999998864 443221 2 244689999999987765421 457899999999
Q ss_pred CCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeec
Q 037505 384 SYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDE 463 (483)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~ 463 (483)
++|. +++.. . ...+++|+.|++++|. +++. . -...+++|+.|++++|. +++... ...+++|+.|++++
T Consensus 317 ~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 317 YFNN-ISDIS--P-VSSLTKLQRLFFYNNK-VSDV--S-SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLND 384 (466)
T ss_dssp CSSC-CSCCG--G-GGGCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCC
T ss_pred cCCc-CCCch--h-hccCccCCEeECCCCc-cCCc--h-hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccC
Confidence 9987 44322 1 3578999999999886 5542 2 23468999999999865 444322 35789999999999
Q ss_pred cCCcH
Q 037505 464 NKLSD 468 (483)
Q Consensus 464 ~~i~~ 468 (483)
|.++.
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 87665
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=2.1e-22 Score=207.98 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=77.2
Q ss_pred hhcCCCCeeEeeeeecccccccccccCCCCcccchhHH--HHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEecc
Q 037505 63 LLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLF--VVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVS 140 (483)
Q Consensus 63 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~ 140 (483)
.+..+++|++|+++ ...+...... .+ ..+++|++|++++|.+.......+...+++|++|+++
T Consensus 95 ~~~~l~~L~~L~Ls--------------~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 95 GFKCSASLTSLDLS--------------RNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CCCCCTTCCEEECC--------------SSEEEEEGGGGGGG-GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred hhccCCCCCEEECC--------------CCcCCCcCCChHHH-hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 45567888889887 3333221111 12 2367777777777644322211111246677777776
Q ss_pred Cchhh--HHHH---HhcCCCcceEeccccccccccch-hhh--------ccCCCCCcchhccccCCCceEEEccCCcCCh
Q 037505 141 LSRPL--YFNW---VASFSCLKELSVYACDADEVENE-VFR--------RYGETGLCSNEEIDTVLGLESLCLSGIRSED 206 (483)
Q Consensus 141 ~~~~~--~~~~---l~~~~~L~~L~l~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (483)
++.-. .... +..+++|++|++.+|.+.+.... ... .....+ ..+....+++|++|++++|.++.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST--GIPFLGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS--CCCBCTTCCSCCEEECCSSCCCS
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC--CCcccccCCCCCEEECcCCcCCC
Confidence 65421 2222 55666666666666655321100 000 000001 11114566788888888887764
Q ss_pred hHHHHHHHhCCCccEEecCCCC
Q 037505 207 TGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 207 ~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
..... +..+++|+.|+++++.
T Consensus 238 ~~~~~-l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 238 DFSRA-ISTCTELKLLNISSNQ 258 (768)
T ss_dssp CHHHH-TTTCSSCCEEECCSSC
T ss_pred cccHH-HhcCCCCCEEECCCCc
Confidence 33333 3567788888887765
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.5e-21 Score=188.37 Aligned_cols=337 Identities=13% Similarity=0.082 Sum_probs=201.4
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCC
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGL 182 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 182 (483)
.+++|++|+++++.+...........+++|++|+++++.- ..+..+..+++|++|++.+|.+.+..
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------ 119 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV------------ 119 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH------------
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc------------
Confidence 4688888888888443111111123578888888888752 24566778888888888888763210
Q ss_pred cchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCc--HH
Q 037505 183 CSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIV--DV 260 (483)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~ 260 (483)
........+++|++|++++|.++......++..+++|+.|+++++..... ....+.....++|+.|+++++.... ..
T Consensus 120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~L~~L~l~~n~l~~~~~~ 198 (455)
T 3v47_A 120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-CEEDLLNFQGKHFTLLRLSSITLQDMNEY 198 (455)
T ss_dssp HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-CTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-ChhhhhccccccccccccccCcccccchh
Confidence 00011345678888888888775433333346688888888887652211 1111111112577888887654211 00
Q ss_pred ----HHHHHHhhCCCCCeEEeecCCChhHHHHHHHhc--cccccEeeccCCCCCCH------------HHHHHHHHcCCC
Q 037505 261 ----VLLNLAENCDSLNSLLVYDGCSREGLLQFISHC--RCNLQKLDLRLPLDLNN------------VHLSAVAVKFRG 322 (483)
Q Consensus 261 ----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~l~~------------~~~~~l~~~~~~ 322 (483)
........+++|+.|+++++.........+... ..+|+.|+++++..... ..+. ....++
T Consensus 199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 276 (455)
T 3v47_A 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK--GLEASG 276 (455)
T ss_dssp CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG--GGTTSC
T ss_pred hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc--cccccC
Confidence 000011234678888887665433333332222 13788888876422110 0000 012468
Q ss_pred CcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCC
Q 037505 323 LSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCN 402 (483)
Q Consensus 323 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 402 (483)
|++|+++++. ++......+ ...++|++|++++|........ ....+++|++|++++|. ++... ...+..++
T Consensus 277 L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~ 347 (455)
T 3v47_A 277 VKTCDLSKSK-IFALLKSVF--SHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNF-LGSID-SRMFENLD 347 (455)
T ss_dssp CCEEECCSSC-CCEECTTTT--TTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSC-CCEEC-GGGGTTCT
T ss_pred ceEEEecCcc-ccccchhhc--ccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCc-cCCcC-hhHhcCcc
Confidence 9999999864 443322222 2345999999999987664322 23468999999999987 44321 22245789
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 403 YLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 403 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+|++|++++|. ++..... ....+++|++|+++++ .++..... .+..+++|+.|++++|.++.+
T Consensus 348 ~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 348 KLEVLDLSYNH-IRALGDQ-SFLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBCCC
T ss_pred cCCEEECCCCc-ccccChh-hccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcccC
Confidence 99999999986 5442222 2345899999999995 45543222 234789999999999987765
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=3.4e-19 Score=173.46 Aligned_cols=304 Identities=17% Similarity=0.193 Sum_probs=215.4
Q ss_pred hcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCc
Q 037505 104 SSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLC 183 (483)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 183 (483)
..+++|++|++++|.++.... ...+++|++|+++++.-.....+..+++|++|++.+|.+..++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~------------- 128 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID------------- 128 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-------------
T ss_pred hhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh-------------
Confidence 347999999999996654332 3478999999999886332222889999999999998763322
Q ss_pred chhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHH
Q 037505 184 SNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLL 263 (483)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~ 263 (483)
....+++|++|++++|.+.... . ...+++|+.|++++. +.... . ...+++|++|+++++.....
T Consensus 129 ---~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~~--~~~~~---~-~~~l~~L~~L~l~~n~l~~~---- 192 (466)
T 1o6v_A 129 ---PLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSFGNQ--VTDLK---P-LANLTTLERLDISSNKVSDI---- 192 (466)
T ss_dssp ---GGTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEEEES--CCCCG---G-GTTCTTCCEEECCSSCCCCC----
T ss_pred ---HHcCCCCCCEEECCCCccCCCh--h-hccCCcccEeecCCc--ccCch---h-hccCCCCCEEECcCCcCCCC----
Confidence 1467889999999999876432 2 467899999999642 22221 1 34458999999998753221
Q ss_pred HHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHH
Q 037505 264 NLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALG 343 (483)
Q Consensus 264 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 343 (483)
.....+++|+.|+++++....... +...+ +|++|+++++ .+... .. ...+++|++|+++++. ++....
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---- 260 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGN-QLKDI--GT-LASLTNLTDLDLANNQ-ISNLAP---- 260 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSS-CCCCC--GG-GGGCTTCSEEECCSSC-CCCCGG----
T ss_pred hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCC-Ccccc--hh-hhcCCCCCEEECCCCc-cccchh----
Confidence 124678999999998765222111 23333 8999999985 44332 12 2458999999999975 433221
Q ss_pred HhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 037505 344 VAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSM 423 (483)
Q Consensus 344 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l 423 (483)
...+++|++|++++|...... . ...+++|++|++++|. +++. .. ...+++|+.|++++|. +++...
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~--- 326 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNIS-----P-LAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTYLTLYFNN-ISDISP--- 326 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCG-----G-GTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSEEECCSSC-CSCCGG---
T ss_pred hhcCCCCCEEECCCCccCccc-----c-ccCCCccCeEEcCCCc-ccCc--hh-hcCCCCCCEEECcCCc-CCCchh---
Confidence 224569999999999876642 1 4578999999999997 4432 22 4589999999999986 544222
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 424 SKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 424 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
...+++|++|++++|. +++. .. ...+++|+.|++++|++++.
T Consensus 327 ~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNK-VSDV--SS-LANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCBC
T ss_pred hccCccCCEeECCCCc-cCCc--hh-hccCCCCCEEeCCCCccCcc
Confidence 4568999999999975 4443 22 24799999999999998875
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.1e-21 Score=197.89 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=61.4
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH--HHHhc
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVV--SMSKS 426 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~--~l~~~ 426 (483)
+|+.|++++|....... ......+++|++|++++|. ++... ...+..+++|++|++++|. +++..+. .....
T Consensus 401 ~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSL-LDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQT 474 (606)
T ss_dssp TCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCC-CBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGG
T ss_pred cCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCc-cCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhcc
Confidence 55555555554433210 1112345667777776665 22211 1123356777777777765 4331110 12345
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 427 CKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 427 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+++|+.|++++|. ++......+ ..+++|+.|++++|+++..
T Consensus 475 l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 475 LGRLEILVLSFCD-LSSIDQHAF-TSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCGG
T ss_pred CCCccEEECCCCc-cCccChhhh-ccccCCCEEECCCCccCcC
Confidence 7788888888864 443222222 3678888888888888765
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=7.4e-22 Score=203.87 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=75.8
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|++|+++++. ++......+ ...++|+.|++++|...... +.....+++|++|++++|. ++.. +...+
T Consensus 416 ~l~~L~~L~Ls~N~-l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~-l~~~-~p~~l 486 (768)
T 3rgz_A 416 NCSELVSLHLSFNY-LSGTIPSSL--GSLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFND-LTGE-IPSGL 486 (768)
T ss_dssp GCTTCCEEECCSSE-EESCCCGGG--GGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCSSC-CCSC-CCGGG
T ss_pred cCCCCCEEECcCCc-ccCcccHHH--hcCCCCCEEECCCCcccCcC----CHHHcCCCCceEEEecCCc-ccCc-CCHHH
Confidence 36667777776653 222111111 12347777777777665432 2223457777888877776 3321 11223
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCc
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
..+++|+.|++++|. +++.. ...+..+++|+.|++++|.. +...- .....+++|+.|++++|.++
T Consensus 487 ~~l~~L~~L~L~~N~-l~~~~-p~~~~~l~~L~~L~L~~N~l-~~~~p-~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 487 SNCTNLNWISLSNNR-LTGEI-PKWIGRLENLAILKLSNNSF-SGNIP-AELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSSCC-EEECC-GGGGGCTTCCEEECCSSEEE
T ss_pred hcCCCCCEEEccCCc-cCCcC-ChHHhcCCCCCEEECCCCcc-cCcCC-HHHcCCCCCCEEECCCCccC
Confidence 467788888888775 43211 11234477888888888643 22111 11236788888888887665
No 17
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=2.9e-17 Score=155.78 Aligned_cols=267 Identities=17% Similarity=0.120 Sum_probs=131.2
Q ss_pred CCCceEEEccCCcCChhHHHHHH---HhCCCccEEecCCCC--CCCch---hHHHH--HhhccCCCcEEeCCCCCCCcH-
Q 037505 191 VLGLESLCLSGIRSEDTGVGWLW---RSCKRLKKLQLKSCS--GIGDG---GSFAN--FVKCSQGLEEVKLRTCRSIVD- 259 (483)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~--~~~~~---~~~~~--~~~~~~~L~~L~l~~~~~~~~- 259 (483)
+++|++|++++|.++..+...+. ..+++|+.|+++++. .+... ++... ....+++|++|+++++. +++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHH
Confidence 34455555555555444433322 245566666665542 11110 11100 11233566666666543 222
Q ss_pred --HHHHHHHhhCCCCCeEEeecCCChh----HHHHHHHhcc--------ccccEeeccCCCCCCHHHHHH---HHHcCCC
Q 037505 260 --VVLLNLAENCDSLNSLLVYDGCSRE----GLLQFISHCR--------CNLQKLDLRLPLDLNNVHLSA---VAVKFRG 322 (483)
Q Consensus 260 --~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~--------~~L~~L~l~~~~~l~~~~~~~---l~~~~~~ 322 (483)
..+......+++|+.|+++++.... .+...+.... ++|++|++++ +.+++..+.. ....+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHHHHHHHHhCCC
Confidence 1233334455666666665544321 1122222220 2677777766 3454333332 2335667
Q ss_pred CcEEEccCCCccChhhHHHHHH---hcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 323 LSVLRLQSCCLVSGDGLKALGV---AMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 323 L~~L~l~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
|++|++++| .+++.++..+.. ...++|+.|++++|.....+...+......+++|++|+|++|. +++.+...+..
T Consensus 189 L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 266 (386)
T 2ca6_A 189 LHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVD 266 (386)
T ss_dssp CCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHH
T ss_pred cCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHH
Confidence 777777775 456555544432 2334677777776665433222244444566777777777766 56554443332
Q ss_pred -----cCCCCCEEEecCCCCCCHHHHHHHH----hcCCCCCEEeccCCCCCChHH--HHHHHHcCCCCcEEEeec
Q 037505 400 -----SCNYLTELKLRGCKGLTSMAVVSMS----KSCKRLQTVDIMHCCRVGAEA--VELFVLNSPQLRRVEVDE 463 (483)
Q Consensus 400 -----~~~~L~~L~l~~~~~i~~~~~~~l~----~~~~~L~~L~l~~c~~i~~~~--~~~l~~~~~~L~~L~l~~ 463 (483)
.+++|+.|++++|. +++.++..+. ..+++|+.|++++|. ++..+ +..+...+++++.++++.
T Consensus 267 ~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 15677777777665 6654333222 335777777777643 34333 344544455555444443
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.79 E-value=2.1e-19 Score=179.07 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=78.9
Q ss_pred hhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCc
Q 037505 63 LLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLS 142 (483)
Q Consensus 63 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 142 (483)
.+..+++|++|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++
T Consensus 45 ~~~~l~~L~~L~Ls--------------~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n 108 (549)
T 2z81_A 45 DLRACANLQVLILK--------------SSRINTIEGDAF-YSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGN 108 (549)
T ss_dssp TTSSCTTCCEEECT--------------TSCCCEECTTTT-TTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTC
T ss_pred hhhcCCcccEEECC--------------CCCcCccChhhc-cccccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCC
Confidence 45677888888887 222222111111 2367788888888765544433333 5778888888776
Q ss_pred hhh---HHHHHhcCCCcceEecccccc-ccccchhhhccC----------CCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 143 RPL---YFNWVASFSCLKELSVYACDA-DEVENEVFRRYG----------ETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 143 ~~~---~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
.-. ....+..+++|++|++.+|.. ..++...+.... ............+++|++|+++++.....
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~- 187 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL- 187 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc-
Confidence 522 123456777788888877762 222211111100 00000111223455666777766654321
Q ss_pred HHHHHHhCCCccEEecCCCC
Q 037505 209 VGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~ 228 (483)
...+...+++|+.|+++++.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCB
T ss_pred chhhHhhcccccEEEccCCc
Confidence 22233557788888887654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=8.7e-21 Score=191.43 Aligned_cols=139 Identities=17% Similarity=0.151 Sum_probs=73.1
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|++|+++++. ++......+. ..++|++|++++|........ .......+++|++|++++|. ++..... .+
T Consensus 423 ~l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~ 496 (606)
T 3t6q_A 423 NLHLLKVLNLSHSL-LDISSEQLFD--GLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCD-LSSIDQH-AF 496 (606)
T ss_dssp TCTTCCEEECTTCC-CBTTCTTTTT--TCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSC-CCEECTT-TT
T ss_pred CcccCCEEECCCCc-cCCcCHHHHh--CCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCc-cCccChh-hh
Confidence 35666666666643 2222111111 234677777777665431100 00113456777777777775 3322111 22
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
..+++|+.|++++|. ++...... ...++.| .|++++|. ++.... .....+++|+.|++++|.++.
T Consensus 497 ~~l~~L~~L~Ls~N~-l~~~~~~~-l~~l~~L-~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNR-LTSSSIEA-LSHLKGI-YLNLASNH-ISIILP-SLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTCTTCCEEECCSSC-CCGGGGGG-GTTCCSC-EEECCSSC-CCCCCG-GGHHHHHTSSEEECTTCCEEC
T ss_pred ccccCCCEEECCCCc-cCcCChhH-hCccccc-EEECcCCc-ccccCH-hhcccCCCCCEEeCCCCCccc
Confidence 356777777777764 55433322 2346777 77777753 332211 112356788888888887664
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=2.2e-21 Score=195.78 Aligned_cols=86 Identities=17% Similarity=0.053 Sum_probs=42.0
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEeccccccccccchhhhccCCCCCc
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLC 183 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 183 (483)
+++|++|++++|.++......+. .+++|++|+++++.-. ....++.+++|++|++.+|.+. ...
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------~~~ 144 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-------------SCK 144 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC-------------CCC
T ss_pred hhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc-------------cee
Confidence 44555555555533322111111 3455555555544311 1122445555555555555431 112
Q ss_pred chhccccCCCceEEEccCCcCC
Q 037505 184 SNEEIDTVLGLESLCLSGIRSE 205 (483)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~ 205 (483)
.......+++|++|++++|.++
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCC
T ss_pred chHhHhhcCCCCEEEccCCcce
Confidence 2334566788999999888764
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=2.3e-19 Score=178.81 Aligned_cols=353 Identities=18% Similarity=0.170 Sum_probs=177.3
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hh
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PL 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~ 145 (483)
+.+++|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++. ..
T Consensus 26 ~~L~~L~Ls--------------~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 26 AAMKSLDLS--------------FNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTCCEEECC--------------SSCCCEECSSTT-SSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCSC
T ss_pred CCccEEECc--------------CCccCccChhhh-hcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCccCcc
Confidence 789999998 222322211111 3479999999999966543333333 68899999999886 33
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCc-CChhHHHHHHHhCCCccEEec
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIR-SEDTGVGWLWRSCKRLKKLQL 224 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l 224 (483)
....++.+++|++|++++|.+...+ .......+++|++|++++|. ++... ...+..+++|++|++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~-------------~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLG-------------VTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEI 155 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSC-------------SSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEE
T ss_pred CHHHhccCCCCcEEECCCCcccccc-------------hhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeec
Confidence 5667899999999999999874221 11223456677777777775 22111 111245677777777
Q ss_pred CCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhH---HHHHHHhccccccEee
Q 037505 225 KSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREG---LLQFISHCRCNLQKLD 301 (483)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~ 301 (483)
+++.. .... +.....+++|++|+++++.. . .....+...+++|+.|+++++..... ....... ..+|++|+
T Consensus 156 ~~n~l-~~~~--~~~l~~l~~L~~L~l~~n~~-~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~~L~~L~ 229 (549)
T 2z81_A 156 KALSL-RNYQ--SQSLKSIRDIHHLTLHLSES-A-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV-SSPMKKLA 229 (549)
T ss_dssp EETTC-CEEC--TTTTTTCSEEEEEEEECSBS-T-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC-CCCCCEEE
T ss_pred cCCcc-cccC--hhhhhccccCceEecccCcc-c-ccchhhHhhcccccEEEccCCccccccccccchhhh-hhccccee
Confidence 66542 2110 01122235666666655431 1 11122233456666666654321110 0000000 11445555
Q ss_pred ccCCCCCCHHHHHHHH---HcCCCCcEEEccCCCc-----------------------------cChh----hHHHHHHh
Q 037505 302 LRLPLDLNNVHLSAVA---VKFRGLSVLRLQSCCL-----------------------------VSGD----GLKALGVA 345 (483)
Q Consensus 302 l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~-----------------------------~~~~----~~~~~~~~ 345 (483)
+.+ +.+.+.....+. ..+++|+.+++++|.. +... .+..+. .
T Consensus 230 l~~-n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~-~ 307 (549)
T 2z81_A 230 FRG-SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY-S 307 (549)
T ss_dssp EES-CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH-H
T ss_pred ccc-cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh-h
Confidence 544 233333322222 2233444444433311 1110 000111 1
Q ss_pred cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHH--HHhcCCCCCEEEecCCCCCCHHH-HHH
Q 037505 346 MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMA--MLVSCNYLTELKLRGCKGLTSMA-VVS 422 (483)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~i~~~~-~~~ 422 (483)
..++|+.|+++++...... ..+...+++|++|++++|. +++..... ....+++|+.|++++|. ++... ...
T Consensus 308 ~~~~L~~L~l~~n~l~~ip----~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 381 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVP----CSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGE 381 (549)
T ss_dssp HSTTCCEEEEESSCCCCCC----HHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHH
T ss_pred hcccceEEEeccCccccCC----HHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccccccchh
Confidence 1236666666666554321 1223356777777777766 44432221 12356677777777765 44322 123
Q ss_pred HHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCc
Q 037505 423 MSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 423 l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
....+++|++|++++|. ++. +......+++|+.|++++|.++
T Consensus 382 ~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNT-FHP--MPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp HGGGCTTCCEEECTTCC-CCC--CCSCCCCCTTCCEEECTTSCCS
T ss_pred hhhcCCCCCEEECCCCC-Ccc--CChhhcccccccEEECCCCCcc
Confidence 34556777777777653 331 1111124555666666666554
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=3.5e-19 Score=169.39 Aligned_cols=150 Identities=18% Similarity=0.145 Sum_probs=89.2
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|++|+++++ .+..... ..+++|+.|+++++. +++.. .+ ...++|++|+++++......+ .....+
T Consensus 206 ~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~n~-l~~~~--~l--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l 271 (390)
T 3o6n_A 206 AVEELDASHN-SINVVRG----PVNVELTILKLQHNN-LTDTA--WL--LNYPGLVEVDLSYNELEKIMY----HPFVKM 271 (390)
T ss_dssp SCSEEECCSS-CCCEEEC----CCCSSCCEEECCSSC-CCCCG--GG--GGCTTCSEEECCSSCCCEEES----GGGTTC
T ss_pred cceEEECCCC-eeeeccc----cccccccEEECCCCC-CcccH--HH--cCCCCccEEECCCCcCCCcCh----hHcccc
Confidence 5666666653 2222110 124678888887753 44321 11 234588888888877655422 123457
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCC
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQ 455 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~ 455 (483)
++|++|++++|. ++. +......+++|+.|++++|. ++.. ..-...+++|++|++++|. ++... ...+++
T Consensus 272 ~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~ 340 (390)
T 3o6n_A 272 QRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNH-LLHV--ERNQPQFDRLENLYLDHNS-IVTLK----LSTHHT 340 (390)
T ss_dssp SSCCEEECCSSC-CCE--EECSSSCCTTCCEEECCSSC-CCCC--GGGHHHHTTCSEEECCSSC-CCCCC----CCTTCC
T ss_pred ccCCEEECCCCc-Ccc--cCcccCCCCCCCEEECCCCc-ceec--CccccccCcCCEEECCCCc-cceeC----chhhcc
Confidence 888888888876 333 11112357788888888875 4321 1112346788888888854 44433 246788
Q ss_pred CcEEEeeccCCcHHH
Q 037505 456 LRRVEVDENKLSDVV 470 (483)
Q Consensus 456 L~~L~l~~~~i~~~~ 470 (483)
|+.|++++|.++.+.
T Consensus 341 L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNS 355 (390)
T ss_dssp CSEEECCSSCEEHHH
T ss_pred CCEEEcCCCCccchh
Confidence 888888888888773
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=3.1e-20 Score=180.63 Aligned_cols=333 Identities=17% Similarity=0.124 Sum_probs=216.0
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh---HHHHHhcCCCcceEeccccccccccchhhhccCCCCCc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL---YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLC 183 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 183 (483)
++|++|+++++.++......+. .+++|++|+++++... ....+..+++|++|++++|.+....
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~------------- 95 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE------------- 95 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-------------
T ss_pred CccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-------------
Confidence 7899999999966654333333 6899999999988532 3566889999999999999873322
Q ss_pred chhccccCCCceEEEccCCcCChhHHHH-HHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHH
Q 037505 184 SNEEIDTVLGLESLCLSGIRSEDTGVGW-LWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVL 262 (483)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l 262 (483)
......+++|++|++++|.++...+.. .+..+++|+.|+++++......+ ..+...+++|++|+++++.... ...
T Consensus 96 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~ 171 (455)
T 3v47_A 96 -TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHVLDLTFNKVKS-ICE 171 (455)
T ss_dssp -TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGGGGGCTTCCEEECTTCCBSC-CCT
T ss_pred -hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc--ccccCCCCcccEEeCCCCcccc-cCh
Confidence 222356789999999999987543332 24568999999999876332211 1123445899999999875221 111
Q ss_pred HHHHh-hCCCCCeEEeecCCChh----HHH----HHHHhccccccEeeccCCCCCCHHHHHHHHHc--CCCCcEEEccCC
Q 037505 263 LNLAE-NCDSLNSLLVYDGCSRE----GLL----QFISHCRCNLQKLDLRLPLDLNNVHLSAVAVK--FRGLSVLRLQSC 331 (483)
Q Consensus 263 ~~~~~-~~~~L~~L~l~~~~~~~----~~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~--~~~L~~L~l~~~ 331 (483)
..+.. ..++|+.|+++++.... .+. ...... ++|++|++++ +.+.......+... .++|+.|+++++
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred hhhhccccccccccccccCcccccchhhcccccccccccc-ceeeeEecCC-CcccccchhhhhccccccceeeEeeccc
Confidence 11111 12578888887544211 000 001112 2799999998 46666555555432 478999999876
Q ss_pred CccCh---------hhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCC
Q 037505 332 CLVSG---------DGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCN 402 (483)
Q Consensus 332 ~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 402 (483)
..... .....+.....++|+.|+++++...... ......+++|++|++++|. +++.... .+..++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~ 323 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL----KSVFSHFTDLEQLTLAQNE-INKIDDN-AFWGLT 323 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSC-CCEECTT-TTTTCT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccc----hhhcccCCCCCEEECCCCc-ccccChh-HhcCcc
Confidence 32211 0001111112358999999999876542 2234578999999999987 4432212 234789
Q ss_pred CCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 403 YLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 403 ~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+|++|++++|. ++.... .....+++|+.|++++|. ++......+ ..+++|+.|++++|+++..
T Consensus 324 ~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 324 HLLKLNLSQNF-LGSIDS-RMFENLDKLEVLDLSYNH-IRALGDQSF-LGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TCCEEECCSSC-CCEECG-GGGTTCTTCCEEECCSSC-CCEECTTTT-TTCTTCCEEECCSSCCSCC
T ss_pred cCCEEECCCCc-cCCcCh-hHhcCcccCCEEECCCCc-ccccChhhc-cccccccEEECCCCccccC
Confidence 99999999986 543222 223568999999999964 554322223 4799999999999998864
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=1.7e-16 Score=150.52 Aligned_cols=252 Identities=18% Similarity=0.179 Sum_probs=178.6
Q ss_pred HHHhCCCccEEecCCCCCCCchhHHHHH--hhccCCCcEEeCCCCC--CCc---HHHHH---HHHhhCCCCCeEEeecCC
Q 037505 212 LWRSCKRLKKLQLKSCSGIGDGGSFANF--VKCSQGLEEVKLRTCR--SIV---DVVLL---NLAENCDSLNSLLVYDGC 281 (483)
Q Consensus 212 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~--~~~---~~~l~---~~~~~~~~L~~L~l~~~~ 281 (483)
.+..+++|+.|+++++. ++..+..... ...+++|++|+++++. .+. ...+. .....+++|++|+++++.
T Consensus 27 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34678999999999875 5554432221 3346899999999873 222 12332 334578999999998766
Q ss_pred Chh----HHHHHHHhccccccEeeccCCCCCCHHHHHHHHH---cC---------CCCcEEEccCCCccChhhHHHHHH-
Q 037505 282 SRE----GLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAV---KF---------RGLSVLRLQSCCLVSGDGLKALGV- 344 (483)
Q Consensus 282 ~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~---------~~L~~L~l~~~~~~~~~~~~~~~~- 344 (483)
... .+...+..++ +|++|++++| .++......+.. .+ ++|++|+++++ .+++.++..++.
T Consensus 106 l~~~~~~~l~~~l~~~~-~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHT-PLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKT 182 (386)
T ss_dssp CCTTTHHHHHHHHHHCT-TCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-CCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHH
Confidence 333 4566667666 8999999984 566555444433 23 89999999996 477666665432
Q ss_pred -hcCCCCcEEeccccccccCcchhHHH-HHhcCCCCCEEecCCCcCCCHHHHHHH---HhcCCCCCEEEecCCCCCCHHH
Q 037505 345 -AMSSGLEELALINCDVVDREPGLLAS-LGQNLKQLRKLDLSYNEMLLDKEFMAM---LVSCNYLTELKLRGCKGLTSMA 419 (483)
Q Consensus 345 -~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~i~~~~ 419 (483)
...++|+.|++++|.....+...+.. ....+++|++|+|++|. +++.+...+ +..+++|++|++++|. +++.+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-Cchhh
Confidence 23459999999999876433211222 44578999999999998 776554443 4678999999999987 88877
Q ss_pred HHHHHhc-----CCCCCEEeccCCCCCChHHHHHHH----HcCCCCcEEEeeccCCcHHH
Q 037505 420 VVSMSKS-----CKRLQTVDIMHCCRVGAEAVELFV----LNSPQLRRVEVDENKLSDVV 470 (483)
Q Consensus 420 ~~~l~~~-----~~~L~~L~l~~c~~i~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~ 470 (483)
...+... +++|++|++++|. +++.++..+. ..+++|+.|++++|.+++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6655442 7999999999964 7775444332 45899999999999998764
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=8.9e-21 Score=190.03 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=72.6
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
++|+.|++++|...... ......+++|++|++++|. +++..+...+..+++|+.|++++|. +++.... .+..+
T Consensus 421 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l 493 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSL 493 (570)
T ss_dssp TTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTC
T ss_pred CCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCChh-hhhcc
Confidence 47777777777655432 1223467888888888876 3322222334567899999999875 5432222 23457
Q ss_pred CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 428 KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
++|++|++++|. ++.... ..+..+++|+.|++++|.++.+
T Consensus 494 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 494 SSLQVLNMASNQ-LKSVPD-GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCEEeCCCCc-CCCCCH-HHhhcccCCcEEEecCCcccCC
Confidence 899999999864 443322 2224789999999999877654
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.75 E-value=5e-19 Score=175.06 Aligned_cols=157 Identities=16% Similarity=0.123 Sum_probs=85.3
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhh-HHHHHHhcCCCCcEEeccccccccCcchhHHHHHhc
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDG-LKALGVAMSSGLEELALINCDVVDREPGLLASLGQN 374 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 374 (483)
+|++|+++++ .+.......+ ..+++|++|+++++. ++... +... ....++|+.|++++|......+ ......
T Consensus 325 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~---~~~~~~ 397 (520)
T 2z7x_B 325 PFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEM-TTQMKSLQQLDISQNSVSYDEK---KGDCSW 397 (520)
T ss_dssp CCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHH-HTTCTTCCEEECCSSCCBCCGG---GCSCCC
T ss_pred cccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHH-HhhCCCCCEEECCCCcCCcccc---cchhcc
Confidence 5666666653 3332111111 335666666666643 33211 1111 1233477777777766554211 001234
Q ss_pred CCCCCEEecCCCcCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcC
Q 037505 375 LKQLRKLDLSYNEMLLDKEFMAMLVSC-NYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNS 453 (483)
Q Consensus 375 ~~~L~~L~L~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 453 (483)
+++|++|++++|. +++.. ...+ ++|+.|++++|. ++ .+..-...+++|++|++++|. ++..... ....+
T Consensus 398 l~~L~~L~Ls~N~-l~~~~----~~~l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~~l 467 (520)
T 2z7x_B 398 TKSLLSLNMSSNI-LTDTI----FRCLPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASNQ-LKSVPDG-IFDRL 467 (520)
T ss_dssp CTTCCEEECCSSC-CCGGG----GGSCCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSC-CCCCCTT-TTTTC
T ss_pred CccCCEEECcCCC-CCcch----hhhhcccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCCc-CCccCHH-HhccC
Confidence 5677777777765 33321 1233 578888888775 54 222222367889999999863 4432211 23468
Q ss_pred CCCcEEEeeccCCcHH
Q 037505 454 PQLRRVEVDENKLSDV 469 (483)
Q Consensus 454 ~~L~~L~l~~~~i~~~ 469 (483)
++|+.|++++|.++.+
T Consensus 468 ~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CcccEEECcCCCCccc
Confidence 8999999999988764
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4e-18 Score=171.00 Aligned_cols=308 Identities=16% Similarity=0.089 Sum_probs=153.9
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++++.+++.++.++..... +...+++|++|+++++.- .....+..+++|++|++.+|.+..++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 115 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-------------- 115 (597)
T ss_dssp CCCSEEEESSCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCceEEEeeCCCCCCcCHH-HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC--------------
Confidence 4455555555433221111 112355555555554431 12233445555555555555442211
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN 264 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 264 (483)
......+++|+.|++++|.++.... .++..+++|+.|+++++.. .... +.....+++|+.|+++++.... .
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l-~~~~--~~~~~~l~~L~~L~L~~N~l~~-~---- 186 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNL-ERIE--DDTFQATTSLQNLQLSSNRLTH-V---- 186 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-CBCC--TTTTTTCTTCCEEECTTSCCSB-C----
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcC-CCCC--hhhhhcCCcCcEEECcCCCCCC-c----
Confidence 1112334555555555554432111 1123455555555555431 1110 0112223555555555543111 0
Q ss_pred HHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHH
Q 037505 265 LAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGV 344 (483)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 344 (483)
-...+++|+.|+++++.... + ..+.+|+.|+++++ .+.... ....++|+.|+++++. +++. ..+
T Consensus 187 ~~~~l~~L~~L~l~~n~l~~-----l-~~~~~L~~L~ls~n-~l~~~~----~~~~~~L~~L~L~~n~-l~~~--~~l-- 250 (597)
T 3oja_B 187 DLSLIPSLFHANVSYNLLST-----L-AIPIAVEELDASHN-SINVVR----GPVNVELTILKLQHNN-LTDT--AWL-- 250 (597)
T ss_dssp CGGGCTTCSEEECCSSCCSE-----E-ECCTTCSEEECCSS-CCCEEE----CSCCSCCCEEECCSSC-CCCC--GGG--
T ss_pred ChhhhhhhhhhhcccCcccc-----c-cCCchhheeeccCC-cccccc----cccCCCCCEEECCCCC-CCCC--hhh--
Confidence 02334555555554332110 0 01125777777663 332110 0124578888888764 4432 111
Q ss_pred hcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 037505 345 AMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMS 424 (483)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 424 (483)
...++|+.|++++|......+. ....+++|+.|+|++|. ++. +......+++|+.|++++|. ++. +..-.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~~--i~~~~ 320 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNH-LLH--VERNQ 320 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSC-CCC--CGGGH
T ss_pred ccCCCCCEEECCCCccCCCCHH----HhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCC-CCc--cCccc
Confidence 2345888888888876554221 23467888888888876 333 12222357888888888876 442 21112
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 425 KSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 425 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
..+++|+.|++++|. ++... ...+++|+.|++++|.++.+
T Consensus 321 ~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 321 PQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHH
T ss_pred ccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCCCCh
Confidence 346888888888865 44332 23678888888888888776
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=1.9e-20 Score=188.99 Aligned_cols=66 Identities=9% Similarity=0.050 Sum_probs=50.3
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh---HHHHHhcCCCcceEeccccccccccc
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL---YFNWVASFSCLKELSVYACDADEVEN 171 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~ 171 (483)
.+++|++|++++|.+.......+ ..+++|++|+++++.-. .+..++++++|++|++.+|.+.....
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CcccCCEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 47899999999996543222222 36889999999988632 35678899999999999998866543
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=171.82 Aligned_cols=203 Identities=15% Similarity=0.090 Sum_probs=119.8
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHH
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYF 147 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 147 (483)
+.+++|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++.-...
T Consensus 21 ~~L~~L~Ls--------------~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 21 QKTTILNIS--------------QNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp TTCSEEECC--------------SSCCCCCCHHHH-TTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSSCCCEE
T ss_pred ccccEEECC--------------CCcccccChhhc-cccccccEEecCCCccCCcChHHhh-cccCCCEEecCCCceeec
Confidence 789999988 333433222223 3478899999998866543333333 588999999988752211
Q ss_pred HHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCc--cEEecC
Q 037505 148 NWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRL--KKLQLK 225 (483)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L--~~L~l~ 225 (483)
... .+++|++|++++|.+..+ ..+.....+++|++|++++|.++...+ ..+++| +.|+++
T Consensus 85 p~~-~l~~L~~L~L~~N~l~~~-------------~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 85 SCH-PTVNLKHLDLSFNAFDAL-------------PICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLLV 146 (520)
T ss_dssp ECC-CCCCCSEEECCSSCCSSC-------------CCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEEE
T ss_pred Ccc-ccCCccEEeccCCccccc-------------cchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEee
Confidence 111 788899999988876321 122334567899999999998876433 456777 999988
Q ss_pred CCCC--CCc--hhHHH---------------------HHhhccCCCcEEeCCCCCC---C--cHHHHHHHHhhCCCCCeE
Q 037505 226 SCSG--IGD--GGSFA---------------------NFVKCSQGLEEVKLRTCRS---I--VDVVLLNLAENCDSLNSL 275 (483)
Q Consensus 226 ~~~~--~~~--~~~~~---------------------~~~~~~~~L~~L~l~~~~~---~--~~~~l~~~~~~~~~L~~L 275 (483)
++.. ... ..+.. .....+++|+.|+++++.. . ....+. ....+++|+.|
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L 225 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNL 225 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEE
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhc
Confidence 7653 111 00000 0011246777777776430 0 011222 34568899999
Q ss_pred EeecCC-ChhHHHHHHHhc-cccccEeeccCC
Q 037505 276 LVYDGC-SREGLLQFISHC-RCNLQKLDLRLP 305 (483)
Q Consensus 276 ~l~~~~-~~~~~~~~~~~~-~~~L~~L~l~~~ 305 (483)
+++++. ....+....... .++|++|+++++
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 997654 222222222211 127999998764
No 30
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.4e-16 Score=146.91 Aligned_cols=251 Identities=16% Similarity=0.070 Sum_probs=111.7
Q ss_pred ccCCCceEEEccCCcCChhHH---HHHHHhCC-CccEEecCCCCCCCchhH---HHHHhhccCCCcEEeCCCCCC--CcH
Q 037505 189 DTVLGLESLCLSGIRSEDTGV---GWLWRSCK-RLKKLQLKSCSGIGDGGS---FANFVKCSQGLEEVKLRTCRS--IVD 259 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~l---~~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~--~~~ 259 (483)
....+|++|++++|.+++.+. ...+..++ +|++|+++++. +++.+. ...+....++|++|+++++.. ...
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 444557888888777655443 22334566 77777777764 333222 222222236777777776541 112
Q ss_pred HHHHHHHhhC-CCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHH---HHc-CCCCcEEEccCCCcc
Q 037505 260 VVLLNLAENC-DSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAV---AVK-FRGLSVLRLQSCCLV 334 (483)
Q Consensus 260 ~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~-~~~L~~L~l~~~~~~ 334 (483)
..+......+ ++|+.|+++++. +++.....+ ... +++|++|+++++ .+
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~--------------------------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l 150 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND--------------------------FSSKSSSEFKQAFSNLPASITSLNLRGN-DL 150 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC--------------------------GGGSCHHHHHHHHTTSCTTCCEEECTTS-CG
T ss_pred HHHHHHHHhCCCCccEEECcCCc--------------------------CCcHHHHHHHHHHHhCCCceeEEEccCC-cC
Confidence 2222323333 455555554432 222222221 111 235555555553 24
Q ss_pred ChhhHHHHHHh--cC-CCCcEEeccccccccCcchhHHHHHhcC-CCCCEEecCCCcCCCHHHHHHHH---hc-CCCCCE
Q 037505 335 SGDGLKALGVA--MS-SGLEELALINCDVVDREPGLLASLGQNL-KQLRKLDLSYNEMLLDKEFMAML---VS-CNYLTE 406 (483)
Q Consensus 335 ~~~~~~~~~~~--~~-~~L~~L~l~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~~l~---~~-~~~L~~ 406 (483)
++.+...+... .. ++|++|++++|.........+......+ ++|++|+|++|. +++.+...+. .. .++|++
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceE
Confidence 44443333211 11 2555555555554444332233333333 255555555554 3332222111 11 235555
Q ss_pred EEecCCCCCCHHH---HHHHHhcCCCCCEEeccCCC--CCChHHHHHHHHc---CCCCcEEEeeccCCcHH
Q 037505 407 LKLRGCKGLTSMA---VVSMSKSCKRLQTVDIMHCC--RVGAEAVELFVLN---SPQLRRVEVDENKLSDV 469 (483)
Q Consensus 407 L~l~~~~~i~~~~---~~~l~~~~~~L~~L~l~~c~--~i~~~~~~~l~~~---~~~L~~L~l~~~~i~~~ 469 (483)
|++++|. +++.+ +..+...+++|+.|++++|. .+++.++..+... +++|+.|++++|.+.+.
T Consensus 230 L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5555543 33322 22222334555555555542 3444444444333 23344455555555543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.73 E-value=3.2e-19 Score=174.39 Aligned_cols=301 Identities=15% Similarity=0.125 Sum_probs=151.7
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
+++++|+++++.++......+. .+++|++|+++++.- .....+.++++|++|++.+|.+..++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 96 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-------------- 96 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC--------------
T ss_pred CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC--------------
Confidence 5788888888755543322222 577888888877642 23456778888888888887763322
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN 264 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 264 (483)
......+++|++|++++|.+...... .+..+++|+.|+++++. +.... ......+++|++|+++++.. .. ....
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n~l-~~-~~~~ 170 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDND-LVYIS--HRAFSGLNSLEQLTLEKCNL-TS-IPTE 170 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTT-CCEEC--TTSSTTCTTCCEEEEESCCC-SS-CCHH
T ss_pred cccccCCCCCCEEECCCCccccCChh-HccccccCCEEECCCCc-cceeC--hhhccCCCCCCEEECCCCcC-cc-cChh
Confidence 11224567888888888876432211 12567888888887754 22211 11223347888888877642 21 1122
Q ss_pred HHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHH
Q 037505 265 LAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGV 344 (483)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 344 (483)
....+++|+.|+++++.. ..+.-. . ...+++|++|+++++..+.......+
T Consensus 171 ~l~~l~~L~~L~l~~n~i---------------~~~~~~---~---------~~~l~~L~~L~l~~~~~~~~~~~~~~-- 221 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNI---------------NAIRDY---S---------FKRLYRLKVLEISHWPYLDTMTPNCL-- 221 (477)
T ss_dssp HHTTCTTCCEEEEESCCC---------------CEECTT---C---------SCSCTTCCEEEEECCTTCCEECTTTT--
T ss_pred HhcccCCCcEEeCCCCcC---------------cEeChh---h---------cccCcccceeeCCCCccccccCcccc--
Confidence 344567777777765421 111000 0 01244555555555432221111000
Q ss_pred hcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 037505 345 AMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMS 424 (483)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~ 424 (483)
...+|++|++++|...... ......+++|+.|+|++|. ++.... ..+..+++|+.|+++++. ++..... .+
T Consensus 222 -~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-~~ 292 (477)
T 2id5_A 222 -YGLNLTSLSITHCNLTAVP----YLAVRHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQ-LAVVEPY-AF 292 (477)
T ss_dssp -TTCCCSEEEEESSCCCSCC----HHHHTTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSC-CSEECTT-TB
T ss_pred -cCccccEEECcCCcccccC----HHHhcCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCc-cceECHH-Hh
Confidence 1125666666655544321 1123345666666666554 222111 112345566666666553 3221111 12
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 425 KSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 425 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
..+++|+.|+++++ .++.... ..+..+++|+.|++++|.+..
T Consensus 293 ~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 293 RGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSCEEC
T ss_pred cCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCCccC
Confidence 23566666666664 2332111 111245566666666665543
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=6.1e-19 Score=180.35 Aligned_cols=108 Identities=21% Similarity=0.111 Sum_probs=57.6
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCc
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLC 183 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 183 (483)
+++|++|++++|.++......+. .+++|++|+++++.- +....+..+++|++|++.+|.+....
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------------- 137 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK------------- 137 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-------------
T ss_pred ccCcCEEECCCCccCccChhhhc-cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-------------
Confidence 56666666666644322111122 456666666665531 12234556666666666666542211
Q ss_pred chhccccCCCceEEEccCCcCChhHHHHHH-HhCCCccEEecCCCC
Q 037505 184 SNEEIDTVLGLESLCLSGIRSEDTGVGWLW-RSCKRLKKLQLKSCS 228 (483)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~ 228 (483)
......+++|++|++++|.++......+. ..+++|+.|+++++.
T Consensus 138 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 138 -LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp -CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred -chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 11224567788888888776543332221 235778888887654
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.71 E-value=4.2e-20 Score=186.42 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=66.8
Q ss_pred cCCCCceEEccCCccchh----------------HHHHHHH--hCCcCcEEeccCchh--hHHHHHhcCCCcceEecccc
Q 037505 105 SCSNLKHLRFSAGPVSVS----------------SLLSLSE--ACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYAC 164 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~ 164 (483)
.+++|++|++++|.++.. .++.-.. .+++|++|+++++.- ..+..+..+++|++|++.+|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 478899999998866542 0222222 578899999988752 24567788889999999888
Q ss_pred c-ccc--ccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHH--HHHhCCCccEEecCCCC
Q 037505 165 D-ADE--VENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGW--LWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 165 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~ 228 (483)
. +.+ ++.... .. .....+++|++|++++|.++. +.. .+..+++|+.|+++++.
T Consensus 284 ~~l~~~~lp~~~~-~L--------~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 284 RGISGEQLKDDWQ-AL--------ADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTSCHHHHHHHHH-HH--------HHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCccccchHHHH-hh--------hccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCc
Confidence 6 422 110000 00 001123567777777666551 222 33556667777766554
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=4.3e-18 Score=174.10 Aligned_cols=356 Identities=15% Similarity=0.099 Sum_probs=216.9
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-- 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-- 145 (483)
+.+++|+++ ...+....-..+ ..+++|++|+++++.++......+. .+++|++|+++++.-.
T Consensus 25 ~~l~~L~Ls--------------~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 25 TNITVLNLT--------------HNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp TTCSEEECC--------------SSCCCCCCGGGG-GGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCC
T ss_pred CCCcEEECC--------------CCCCCCcCHHHH-hCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCcc
Confidence 789999998 323322111112 3368999999999866544333344 6899999999887522
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
....+..+++|++|++.+|.+..++ ......+++|++|++++|.++...... ...+++|+.|+++
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIK--------------NNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLS 153 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCC--------------SCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECC
T ss_pred ChhhhccCCCCCEEECCCCccCccC--------------hhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEcc
Confidence 3345788999999999998773332 112356789999999999875432222 2468899999998
Q ss_pred CCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHH-HHHh-ccccccEeecc
Q 037505 226 SCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQ-FISH-CRCNLQKLDLR 303 (483)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~-~~~~L~~L~l~ 303 (483)
++. +.......+.....++|++|+++++.. ... .......+++|+.|.+.+......... .... ...+|++|+++
T Consensus 154 ~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~ 230 (680)
T 1ziw_A 154 NNK-IQALKSEELDIFANSSLKKLELSSNQI-KEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230 (680)
T ss_dssp SSC-CCCBCHHHHGGGTTCEESEEECTTCCC-CCB-CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred CCc-ccccCHHHhhccccccccEEECCCCcc-ccc-ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence 865 332222222222347899999998642 111 122334578899998876553322221 1111 11389999998
Q ss_pred CCCCCCHHHHHHHHH-cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEe
Q 037505 304 LPLDLNNVHLSAVAV-KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLD 382 (483)
Q Consensus 304 ~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~ 382 (483)
++ .+.......+.. ..++|++|+++++. ++......+ ...++|+.|+++++....... .....+++|+.|+
T Consensus 231 ~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 231 NS-QLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSF--AWLPQLEYFFLEYNNIQHLFS----HSLHGLFNVRYLN 302 (680)
T ss_dssp TS-CCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSCCBSEECT----TTTTTCTTCCEEE
T ss_pred CC-cccccChhHhhccCcCCCCEEECCCCC-cCccCcccc--cCcccccEeeCCCCccCccCh----hhhcCCCCccEEe
Confidence 84 333211111111 12469999999864 443322222 234599999999987765422 2245789999999
Q ss_pred cCCCcCCCHHHHHH-------HHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCC----CChHHHHHHHH
Q 037505 383 LSYNEMLLDKEFMA-------MLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCR----VGAEAVELFVL 451 (483)
Q Consensus 383 L~~~~~~~~~~~~~-------l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~----i~~~~~~~l~~ 451 (483)
++++..-....... .+..+++|++|++++|. ++... ......+++|++|++++|.. +....+..+
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~-- 378 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-- 378 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhccc--
Confidence 98764211111111 12468899999999876 43311 12234589999999998641 112111111
Q ss_pred cCCCCcEEEeeccCCcHH
Q 037505 452 NSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 452 ~~~~L~~L~l~~~~i~~~ 469 (483)
..++|+.|++++|+++..
T Consensus 379 ~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 379 AHSPLHILNLTKNKISKI 396 (680)
T ss_dssp TTSCCCEEECTTSCCCEE
T ss_pred ccCcCceEECCCCCCCeE
Confidence 246899999999988764
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.1e-18 Score=179.40 Aligned_cols=321 Identities=12% Similarity=0.075 Sum_probs=200.9
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch---h-hHHHHHhc-------CCCcceEeccccccccccchh
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR---P-LYFNWVAS-------FSCLKELSVYACDADEVENEV 173 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~---~-~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~ 173 (483)
.+++|++|++++|.+.......+ ..+++|++|+++++. . ..+..+.. +++|++|++.+|.+..+
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i---- 563 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF---- 563 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC----
T ss_pred cCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc----
Confidence 47899999999985433222223 368999999999885 1 23444444 45999999999887322
Q ss_pred hhccCCCCCcchh--ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCC-CcEEe
Q 037505 174 FRRYGETGLCSNE--EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQG-LEEVK 250 (483)
Q Consensus 174 ~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-L~~L~ 250 (483)
+. ....+++|+.|++++|.++. +. .+..+++|+.|+++++. +...+ .. ...+++ |++|+
T Consensus 564 -----------p~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L~~L~Ls~N~-l~~lp--~~-l~~l~~~L~~L~ 625 (876)
T 4ecn_A 564 -----------PASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKLTDLKLDYNQ-IEEIP--ED-FCAFTDQVEGLG 625 (876)
T ss_dssp -----------CCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEESEEECCSSC-CSCCC--TT-SCEECTTCCEEE
T ss_pred -----------CChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcceEEECcCCc-cccch--HH-HhhccccCCEEE
Confidence 22 34577899999999998762 32 34568899999998875 33221 11 233467 99999
Q ss_pred CCCCCCCcHHHHHHHHhhC--CCCCeEEeecCCChhHHHHH---HHh-ccccccEeeccCCCCCCHHHHHHHHHcCCCCc
Q 037505 251 LRTCRSIVDVVLLNLAENC--DSLNSLLVYDGCSREGLLQF---ISH-CRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLS 324 (483)
Q Consensus 251 l~~~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 324 (483)
++++. +. .++...... ++|+.|+++++.....+..+ ... ..++|+.|+++++ .+... ...+...+++|+
T Consensus 626 Ls~N~-L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~ 700 (876)
T 4ecn_A 626 FSHNK-LK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPIS 700 (876)
T ss_dssp CCSSC-CC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCS
T ss_pred CcCCC-CC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCC
Confidence 99875 22 222222222 34899999866532211111 110 1127999999984 44421 123345689999
Q ss_pred EEEccCCCccChhhHHHHHH-----hcCCCCcEEeccccccccCcchhHHHHH--hcCCCCCEEecCCCcCCCHHHHHHH
Q 037505 325 VLRLQSCCLVSGDGLKALGV-----AMSSGLEELALINCDVVDREPGLLASLG--QNLKQLRKLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 325 ~L~l~~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~l 397 (483)
.|+++++. ++......+.. ..+++|+.|++++|..... +... ..+++|+.|+|++|. ++. +..-
T Consensus 701 ~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-----p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~ 771 (876)
T 4ecn_A 701 TIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-----SDDFRATTLPYLSNMDVSYNC-FSS--FPTQ 771 (876)
T ss_dssp EEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCC-----CGGGSTTTCTTCCEEECCSSC-CSS--CCCG
T ss_pred EEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccc-----hHHhhhccCCCcCEEEeCCCC-CCc--cchh
Confidence 99999863 44211111100 0112899999999987642 2222 368999999999987 443 3322
Q ss_pred HhcCCCCCEEEecCCC-----CCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 398 LVSCNYLTELKLRGCK-----GLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 398 ~~~~~~L~~L~l~~~~-----~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
+..+++|+.|++++|. .+... +...+..+++|+.|++++|. ++..... -.++|+.|++++|++..
T Consensus 772 l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~----l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 772 PLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSND-IRKVDEK----LTPQLYILDIADNPNIS 841 (876)
T ss_dssp GGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSC-CCBCCSC----CCSSSCEEECCSCTTCE
T ss_pred hhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCC-CCccCHh----hcCCCCEEECCCCCCCc
Confidence 3478999999997633 12211 11223458999999999965 4432111 24799999999998754
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-18 Score=166.82 Aligned_cols=204 Identities=14% Similarity=0.079 Sum_probs=128.2
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL 145 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 145 (483)
.++.|++|+++ ...+.+. ..+ ..+++|++|++++|.++... ...+++|++|+++++.-.
T Consensus 40 ~l~~L~~L~Ls--------------~n~l~~~--~~l-~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 40 QLATLTSLDCH--------------NSSITDM--TGI-EKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp HHTTCCEEECC--------------SSCCCCC--TTG-GGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCS
T ss_pred HcCCCCEEEcc--------------CCCcccC--hhh-cccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCc
Confidence 46788888887 2233221 112 34788999999988665532 236788999998887522
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
.. .++.+++|++|++.+|.+..++ ...+++|+.|++++|.++... +..+++|+.|+++
T Consensus 99 ~~-~~~~l~~L~~L~L~~N~l~~l~-----------------~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 99 NL-DVTPLTKLTYLNCDTNKLTKLD-----------------VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCH 156 (457)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCC-----------------CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECT
T ss_pred ee-ecCCCCcCCEEECCCCcCCeec-----------------CCCCCcCCEEECCCCccceec----cccCCcCCEEECC
Confidence 22 2678888999999888762211 356678889998888876532 3567888888888
Q ss_pred CCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCC
Q 037505 226 SCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLP 305 (483)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (483)
++..++..+ ...+++|++|+++++.. .. ++ ...+++|+.|+++++..... .+..++ +|++|+++++
T Consensus 157 ~n~~~~~~~-----~~~l~~L~~L~ls~n~l-~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N 222 (457)
T 3bz5_A 157 LNKKITKLD-----VTPQTQLTTLDCSFNKI-TE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSN 222 (457)
T ss_dssp TCSCCCCCC-----CTTCTTCCEEECCSSCC-CC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSS
T ss_pred CCCcccccc-----cccCCcCCEEECCCCcc-ce--ec--cccCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCC
Confidence 875454432 23347888888887642 22 11 44577888888865542111 122333 6777777763
Q ss_pred CCCCHHHHHHHHHcCCCCcEEEccCC
Q 037505 306 LDLNNVHLSAVAVKFRGLSVLRLQSC 331 (483)
Q Consensus 306 ~~l~~~~~~~l~~~~~~L~~L~l~~~ 331 (483)
.+.... ...+++|+.|+++++
T Consensus 223 -~l~~ip----~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 223 -KLTEID----VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -CCSCCC----CTTCTTCSEEECCSS
T ss_pred -cccccC----ccccCCCCEEEeeCC
Confidence 343311 234677777777765
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=5.3e-19 Score=181.63 Aligned_cols=333 Identities=13% Similarity=0.103 Sum_probs=213.0
Q ss_pred cCCCCceEEccCCccchh----------------HHHHHHH--hCCcCcEEeccCchh--hHHHHHhcCCCcceEecccc
Q 037505 105 SCSNLKHLRFSAGPVSVS----------------SLLSLSE--ACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYAC 164 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~ 164 (483)
.+++|++|+|++|.++.. .++.-.. .+++|++|+++++.. ..+..+..+++|+.|++.+|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 479999999999977652 1222222 688999999998863 35677889999999999999
Q ss_pred c-ccc--ccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHH--HHHhCCCccEEecCCCCCCCchhHHHHH
Q 037505 165 D-ADE--VENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGW--LWRSCKRLKKLQLKSCSGIGDGGSFANF 239 (483)
Q Consensus 165 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 239 (483)
. +.+ ++... ... ......+++|+.|++++|.++. +.. .+..+++|+.|+++++. +...+ .
T Consensus 526 ~~lsg~~iP~~i-~~L-------~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~-l~~lp----~ 590 (876)
T 4ecn_A 526 RGISAAQLKADW-TRL-------ADDEDTGPKIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNK-VRHLE----A 590 (876)
T ss_dssp TTSCHHHHHHHH-HHH-------HHCTTTTTTCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSC-CCBCC----C
T ss_pred CCcccccchHHH-Hhh-------hhcccccCCccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCC-cccch----h
Confidence 7 532 11000 000 0012355799999999998872 333 45789999999999876 33322 3
Q ss_pred hhccCCCcEEeCCCCCCCcHHHHHHHHhhCCC-CCeEEeecCCChhHHHHHHHhcc-ccccEeeccCCCCCCHHHHHHHH
Q 037505 240 VKCSQGLEEVKLRTCRSIVDVVLLNLAENCDS-LNSLLVYDGCSREGLLQFISHCR-CNLQKLDLRLPLDLNNVHLSAVA 317 (483)
Q Consensus 240 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~ 317 (483)
...+++|+.|+++++.. . .++.....+++ |+.|+++++... .+...+.... ++|+.|+++++ .+.... ..+.
T Consensus 591 ~~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N-~l~g~i-p~l~ 664 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN-KIGSEG-RNIS 664 (876)
T ss_dssp CCTTSEESEEECCSSCC-S--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS-CTTTTS-SSCS
T ss_pred hcCCCcceEEECcCCcc-c--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC-cCCCcc-ccch
Confidence 34558999999998753 2 23333455777 999999876532 2222222221 24999999984 333210 0000
Q ss_pred -----HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHH---HhcCCCCCEEecCCCcCC
Q 037505 318 -----VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASL---GQNLKQLRKLDLSYNEML 389 (483)
Q Consensus 318 -----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~ 389 (483)
..+++|+.|+++++. ++......+ ...++|+.|++++|............. ..++++|+.|+|++|. +
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~--~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L 740 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNE-IQKFPTELF--ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-L 740 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSC-CCSCCHHHH--HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-C
T ss_pred hhhccccCCCcCEEEccCCc-CCccCHHHH--ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-C
Confidence 124589999999864 453222222 234599999999998764322111100 1234499999999997 4
Q ss_pred CHHHHHHHH--hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCC-----CCChHHHHHHHHcCCCCcEEEee
Q 037505 390 LDKEFMAML--VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCC-----RVGAEAVELFVLNSPQLRRVEVD 462 (483)
Q Consensus 390 ~~~~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~-----~i~~~~~~~l~~~~~~L~~L~l~ 462 (483)
+. +...+ ..+++|+.|++++|. ++. +..-+..+++|+.|+++++. .+... +...+..+++|+.|+++
T Consensus 741 ~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 741 TS--LSDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CC--CCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECC
T ss_pred cc--chHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECC
Confidence 42 33223 378999999999986 554 33224468999999998743 22211 11122479999999999
Q ss_pred ccCCcH
Q 037505 463 ENKLSD 468 (483)
Q Consensus 463 ~~~i~~ 468 (483)
+|+++.
T Consensus 815 ~N~L~~ 820 (876)
T 4ecn_A 815 SNDIRK 820 (876)
T ss_dssp SSCCCB
T ss_pred CCCCCc
Confidence 998843
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=7.6e-19 Score=183.26 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=18.6
Q ss_pred hCCcCcEEeccCchh--hHHHHHhcCCCcceEecccccc
Q 037505 130 ACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 130 ~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
.+++|++|+++++.- ..+..+.++++|++|++++|.+
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence 455555555555431 1234455555555555555544
No 39
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=5.6e-19 Score=176.97 Aligned_cols=131 Identities=16% Similarity=0.122 Sum_probs=91.2
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--h
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--L 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~ 145 (483)
+.++.|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++.- .
T Consensus 28 ~~l~~L~Ls--------------~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 28 FSTKNLDLS--------------FNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp SSCCEEECC--------------SCCCCEECTTTT-TTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEE
T ss_pred ccccEEEcc--------------CCccCccChhHh-hCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCcc
Confidence 679999998 333322211111 3479999999999966543322233 689999999998762 2
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
....+.++++|++|++.+|.+..++ ......+++|++|++++|.+....+...+..+++|+.|+++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~--------------~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLE--------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCST--------------TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CHhhhcCccccccccccccccccCC--------------CccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 4467889999999999998774332 11145778999999999987542222234679999999998
Q ss_pred CCC
Q 037505 226 SCS 228 (483)
Q Consensus 226 ~~~ 228 (483)
++.
T Consensus 158 ~n~ 160 (570)
T 2z63_A 158 SNK 160 (570)
T ss_dssp TSC
T ss_pred CCc
Confidence 875
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.4e-17 Score=158.36 Aligned_cols=323 Identities=15% Similarity=0.108 Sum_probs=214.1
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh-
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP- 144 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~- 144 (483)
.+++++.++++ ...+..-.-. +...+++|++|+++++.++......+. .+++|++|+++++.-
T Consensus 43 ~l~~l~~l~l~--------------~~~l~~l~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFK--------------NSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIR 106 (390)
T ss_dssp GGCCCSEEEEE--------------SCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCC
T ss_pred ccCCceEEEec--------------CCchhhCChh-HhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCC
Confidence 35788999998 3333222211 224479999999999966544333333 688999999998762
Q ss_pred -hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEe
Q 037505 145 -LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQ 223 (483)
Q Consensus 145 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 223 (483)
.....+..+++|++|++.+|.+..++ ......+++|++|++++|.+...... .+..+++|+.|+
T Consensus 107 ~~~~~~~~~l~~L~~L~L~~n~l~~l~--------------~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 171 (390)
T 3o6n_A 107 YLPPHVFQNVPLLTVLVLERNDLSSLP--------------RGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQ 171 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEE
T ss_pred cCCHHHhcCCCCCCEEECCCCccCcCC--------------HHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEE
Confidence 24456788999999999999874332 11234678999999999987543222 135688999999
Q ss_pred cCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeecc
Q 037505 224 LKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLR 303 (483)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 303 (483)
++++. +...+ ...+++|++|+++++.... ....++|+.|+++++...... ....++|+.|+++
T Consensus 172 l~~n~-l~~~~-----~~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 172 LSSNR-LTHVD-----LSLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVR----GPVNVELTILKLQ 234 (390)
T ss_dssp CCSSC-CSBCC-----GGGCTTCSEEECCSSCCSE-------EECCSSCSEEECCSSCCCEEE----CCCCSSCCEEECC
T ss_pred CCCCc-CCccc-----cccccccceeecccccccc-------cCCCCcceEEECCCCeeeecc----ccccccccEEECC
Confidence 98865 33322 2345899999998764221 123468999999765421110 0112389999999
Q ss_pred CCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEec
Q 037505 304 LPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDL 383 (483)
Q Consensus 304 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L 383 (483)
++ .+.+. .....+++|++|+++++. ++......+. ..++|+.|+++++....... ....+++|++|++
T Consensus 235 ~n-~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L 302 (390)
T 3o6n_A 235 HN-NLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFV--KMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDL 302 (390)
T ss_dssp SS-CCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGT--TCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEEC
T ss_pred CC-CCccc---HHHcCCCCccEEECCCCc-CCCcChhHcc--ccccCCEEECCCCcCcccCc-----ccCCCCCCCEEEC
Confidence 84 44432 123568999999999864 4443222222 34699999999988765321 1246899999999
Q ss_pred CCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCc
Q 037505 384 SYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLR 457 (483)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~ 457 (483)
++|. ++. +..-...+++|+.|++++|. ++... ...+++|+.|++++++ ++......+...++...
T Consensus 303 ~~n~-l~~--~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 303 SHNH-LLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND-WDCNSLRALFRNVARPA 367 (390)
T ss_dssp CSSC-CCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCTTT
T ss_pred CCCc-cee--cCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC-ccchhHHHHHHHHHhhc
Confidence 9997 432 11112367899999999987 54432 3458999999999955 66666666665555544
No 41
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.6e-14 Score=135.57 Aligned_cols=257 Identities=13% Similarity=0.041 Sum_probs=137.3
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCC-CceEEEccCCcCChhHHHHHH---HhC-CCcc
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVL-GLESLCLSGIRSEDTGVGWLW---RSC-KRLK 220 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~l~~~~---~~~-~~L~ 220 (483)
....+...++|++|++++|.+...+. .........++ +|++|++++|.+++.+...+. ... ++|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~----------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSIST----------VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCH----------HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred HHHHHhCCCCceEEEccCCCCChHHH----------HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 44555666679999999998743321 00112234456 899999999998765544443 333 8999
Q ss_pred EEecCCCCCCCchhHH---HHHhhccCCCcEEeCCCCCCCcHHHHHHHH---hh-CCCCCeEEeecCCChhHHHHHHHhc
Q 037505 221 KLQLKSCSGIGDGGSF---ANFVKCSQGLEEVKLRTCRSIVDVVLLNLA---EN-CDSLNSLLVYDGCSREGLLQFISHC 293 (483)
Q Consensus 221 ~L~l~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~---~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (483)
.|+++++. +++.+.. ..+....++|++|+++++. +++.....+. .. +++|++|+++++.
T Consensus 84 ~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------------ 149 (362)
T 3goz_A 84 SLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND------------ 149 (362)
T ss_dssp EEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC------------
T ss_pred EEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc------------
Confidence 99999876 4433322 2222333799999999875 3433333332 22 3456665555432
Q ss_pred cccccEeeccCCCCCCHH---HHHHHHHcCC-CCcEEEccCCCccChhhHHHHHHh--cC-CCCcEEeccccccccCcch
Q 037505 294 RCNLQKLDLRLPLDLNNV---HLSAVAVKFR-GLSVLRLQSCCLVSGDGLKALGVA--MS-SGLEELALINCDVVDREPG 366 (483)
Q Consensus 294 ~~~L~~L~l~~~~~l~~~---~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~--~~-~~L~~L~l~~~~~~~~~~~ 366 (483)
+++. .+.......+ +|++|++++| .+++.+...++.. .. ++|+.|++++|.....+..
T Consensus 150 --------------l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 150 --------------LGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp --------------GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred --------------CCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence 2221 1111112233 5666666554 3444443333211 12 2566666666655554333
Q ss_pred hHHHHHhc-CCCCCEEecCCCcCCCHHH---HHHHHhcCCCCCEEEecCCC--CCCHHHHHHHHhc---CCCCCEEeccC
Q 037505 367 LLASLGQN-LKQLRKLDLSYNEMLLDKE---FMAMLVSCNYLTELKLRGCK--GLTSMAVVSMSKS---CKRLQTVDIMH 437 (483)
Q Consensus 367 ~l~~~~~~-~~~L~~L~L~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~--~i~~~~~~~l~~~---~~~L~~L~l~~ 437 (483)
.+...... .++|++|+|++|. +++.+ +..+...+++|+.|++++|. .+++..+..+... +++|+.|++++
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 23332222 3466666666665 44422 23333455666666666654 3555555555443 34455666666
Q ss_pred CCCCCh
Q 037505 438 CCRVGA 443 (483)
Q Consensus 438 c~~i~~ 443 (483)
+ .+.+
T Consensus 294 N-~l~~ 298 (362)
T 3goz_A 294 K-EIHP 298 (362)
T ss_dssp C-BCCG
T ss_pred C-cCCC
Confidence 3 3444
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=6.9e-19 Score=177.52 Aligned_cols=308 Identities=13% Similarity=0.070 Sum_probs=156.9
Q ss_pred hCCcCcEEeccCch--hh-----------------HHHHHh--cCCCcceEeccccccccccchhhhccCCCCCcchhcc
Q 037505 130 ACNHLTSLTVSLSR--PL-----------------YFNWVA--SFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEI 188 (483)
Q Consensus 130 ~~~~L~~L~l~~~~--~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (483)
.+++|++|+++++. .. .+..++ .+++|++|++.+|.+. ...+...
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--------------~~~p~~l 269 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--------------TKLPTFL 269 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--------------SSCCTTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--------------ccChHHH
Confidence 57778888887765 21 334455 7788888888777652 1122334
Q ss_pred ccCCCceEEEccCCc-CChhHHHHHHHh------CCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHH
Q 037505 189 DTVLGLESLCLSGIR-SEDTGVGWLWRS------CKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVV 261 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~-~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 261 (483)
..+++|+.|++++|. ++...+..-+.. +++|+.|+++++.. ...+... ....+++|++|+++++.....
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~-~l~~l~~L~~L~L~~N~l~g~-- 345 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVET-SLQKMKKLGMLECLYNQLEGK-- 345 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHH-HHTTCTTCCEEECCSCCCEEE--
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchh-hhccCCCCCEEeCcCCcCccc--
Confidence 567889999999987 765233322233 48899999988653 2221100 223447888888877642211
Q ss_pred HHHHHhhCCCCCeEEeecCCChhHHHHHHHhcccc-ccEeeccCC------------------------CCCCHHHHHHH
Q 037505 262 LLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCN-LQKLDLRLP------------------------LDLNNVHLSAV 316 (483)
Q Consensus 262 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~------------------------~~l~~~~~~~l 316 (483)
++ ....+++|+.|+++++... .+...+...+ + |++|+++++ +.+.......+
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 11 1223445555555433211 1111122222 2 444444442 11211000000
Q ss_pred H------HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHH---HhcCCCCCEEecCCCc
Q 037505 317 A------VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASL---GQNLKQLRKLDLSYNE 387 (483)
Q Consensus 317 ~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~ 387 (483)
. ..+++|++|+++++. ++..... +. ...++|+.|++++|.........+... ..++++|++|++++|.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQ-ISKFPKE-LF-STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSC-CCSCCTH-HH-HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred cccccccccCCCCCEEECcCCc-cCcCCHH-HH-ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 0 023356666666542 3321111 11 123477777777776653221111000 0112278888887776
Q ss_pred CCCHHHHHHHH--hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCC-----CCChHHHHHHHHcCCCCcEEE
Q 037505 388 MLLDKEFMAML--VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCC-----RVGAEAVELFVLNSPQLRRVE 460 (483)
Q Consensus 388 ~~~~~~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~-----~i~~~~~~~l~~~~~~L~~L~ 460 (483)
++. +...+ ..+++|+.|++++|. ++. +..-...+++|+.|+++++. .+.... ...+..+++|+.|+
T Consensus 500 -l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 500 -LTK--LSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQ 572 (636)
T ss_dssp -CCB--CCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC-CTTGGGCSSCCEEE
T ss_pred -CCc--cChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccC-hHHHhcCCCCCEEE
Confidence 342 22222 267888888888875 443 22223457888888886532 122111 11123688888898
Q ss_pred eeccCCcH
Q 037505 461 VDENKLSD 468 (483)
Q Consensus 461 l~~~~i~~ 468 (483)
+++|+++.
T Consensus 573 Ls~N~l~~ 580 (636)
T 4eco_A 573 IGSNDIRK 580 (636)
T ss_dssp CCSSCCCB
T ss_pred CCCCcCCc
Confidence 88888743
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=1.7e-17 Score=165.48 Aligned_cols=158 Identities=15% Similarity=0.073 Sum_probs=86.4
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|++|+++++ .+....... ...+++|+.|+++++ .++............++|+.|++++|......+ ......+
T Consensus 354 ~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~~l 427 (562)
T 3a79_B 354 SFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY---DRTCAWA 427 (562)
T ss_dssp CCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS---SCCCCCC
T ss_pred CceEEECCCC-ccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccC---hhhhcCc
Confidence 5666666653 333211111 133566777777664 333321111111233477777777776654111 0012346
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCC
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSC-NYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSP 454 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~ 454 (483)
++|++|++++|. +++.. ...+ ++|+.|++++|. ++. +..-...+++|+.|+++++ .++..... ....++
T Consensus 428 ~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 497 (562)
T 3a79_B 428 ESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVASN-QLKSVPDG-VFDRLT 497 (562)
T ss_dssp TTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCSS-CCCCCCTT-STTTCT
T ss_pred ccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCCC-CCCCCCHH-HHhcCC
Confidence 777777777776 44321 2234 588888888874 542 2211225788999999885 34432211 234788
Q ss_pred CCcEEEeeccCCcHH
Q 037505 455 QLRRVEVDENKLSDV 469 (483)
Q Consensus 455 ~L~~L~l~~~~i~~~ 469 (483)
+|+.|++++|.+..+
T Consensus 498 ~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 498 SLQYIWLHDNPWDCT 512 (562)
T ss_dssp TCCCEECCSCCBCCC
T ss_pred CCCEEEecCCCcCCC
Confidence 999999999888754
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=2.9e-18 Score=178.94 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=68.1
Q ss_pred hhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCc
Q 037505 63 LLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLS 142 (483)
Q Consensus 63 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 142 (483)
.+..+++|++|+++.+.. ...+....+ ..+++|++|+|++|.+.......+. .+++|++|+++++
T Consensus 43 ~~~~l~~L~~LdLs~n~~----------~~~i~~~~f----~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYT----------PLTIDKEAF----RNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFC 107 (844)
T ss_dssp SCSSCCSCSEEEECTTCC----------CCEECTTTT----SSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTC
T ss_pred HCcccccCeEEeCCCCCC----------ccccCHHHh----cCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCC
Confidence 355678888888871000 011111111 3468888888888865543322222 5788888888877
Q ss_pred hhh--HHH--HHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCC
Q 037505 143 RPL--YFN--WVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSE 205 (483)
Q Consensus 143 ~~~--~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (483)
.-. .+. ++..+++|++|++++|.+.+.. .......+++|++|++++|.++
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-------------~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-------------LHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-------------CCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccc-------------cchhHhhCCCCCEEECCCCcCC
Confidence 522 122 3677888888888888763221 1123356677777777777653
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=3.6e-17 Score=163.16 Aligned_cols=331 Identities=16% Similarity=0.130 Sum_probs=172.1
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
.+++|++|++++|.++......+. .+++|++|+++++.-...... .+++|++|++++|.+..++ .
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~-------------~ 138 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLP-------------V 138 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCC-------------C
T ss_pred cCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccC-------------c
Confidence 468888888888865543322222 577888888887652211111 6788888888888763221 1
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCc--cEEecCCCCC--CC--chhHHH---------------------
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRL--KKLQLKSCSG--IG--DGGSFA--------------------- 237 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~--~~~~~~--------------------- 237 (483)
......+++|++|++++|.++...+ ..+++| +.|+++++.. .. ...+..
T Consensus 139 p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred hHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence 2234567789999999888765443 334555 8888876542 00 000000
Q ss_pred HHhhccCCCcEEeCCCCCCCc--HHHHHHHHhhCCCCCeEEeecCC-ChhHHHHHHHhc-cccccEeeccCCCC------
Q 037505 238 NFVKCSQGLEEVKLRTCRSIV--DVVLLNLAENCDSLNSLLVYDGC-SREGLLQFISHC-RCNLQKLDLRLPLD------ 307 (483)
Q Consensus 238 ~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~~L~~L~l~~~~~------ 307 (483)
.....+++|+.|+++++.... -..........++|+.+++.... ....+....... ..+|++|+++++.-
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence 001123456666665532100 01111122334555555554332 211111111100 01444554443210
Q ss_pred ------------------------CCHHHHHHHH---------------------HcCCCCcEEEccCCCccChhhHHHH
Q 037505 308 ------------------------LNNVHLSAVA---------------------VKFRGLSVLRLQSCCLVSGDGLKAL 342 (483)
Q Consensus 308 ------------------------l~~~~~~~l~---------------------~~~~~L~~L~l~~~~~~~~~~~~~~ 342 (483)
+....+..+. ..+++|++|+++++. +++.....+
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 373 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQGC 373 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTTC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc-cccchhhhh
Confidence 0111222211 245677777777653 443222111
Q ss_pred HHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 037505 343 GVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVS 422 (483)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~ 422 (483)
...++|+.|+++++....... ++.....+++|++|++++|. ++.......+..+++|+.|++++|. +++..
T Consensus 374 --~~l~~L~~L~L~~N~l~~~~~--~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--- 444 (562)
T 3a79_B 374 --STLKRLQTLILQRNGLKNFFK--VALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNM-LTGSV--- 444 (562)
T ss_dssp --CSCSSCCEEECCSSCCCBTTH--HHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSC-CCGGG---
T ss_pred --cccCCCCEEECCCCCcCCccc--chhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCC-CCcch---
Confidence 134577888887776654211 33334567788888888776 3321111123356788888888775 54322
Q ss_pred HHhcC-CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 423 MSKSC-KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 423 l~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
.... ++|+.|++++| .++... ..+ ..+++|+.|++++|+++.
T Consensus 445 -~~~l~~~L~~L~L~~N-~l~~ip-~~~-~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 445 -FRCLPPKVKVLDLHNN-RIMSIP-KDV-THLQALQELNVASNQLKS 487 (562)
T ss_dssp -GSSCCTTCSEEECCSS-CCCCCC-TTT-TSSCCCSEEECCSSCCCC
T ss_pred -hhhhcCcCCEEECCCC-cCcccC-hhh-cCCCCCCEEECCCCCCCC
Confidence 2233 58888988885 455211 112 278899999999988875
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.8e-18 Score=169.19 Aligned_cols=298 Identities=18% Similarity=0.099 Sum_probs=172.7
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--h
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--L 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~ 145 (483)
+.++.|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++.- +
T Consensus 32 ~~l~~L~L~--------------~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 32 TETRLLDLG--------------KNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp TTCSEEECC--------------SSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSC
T ss_pred CCCcEEECC--------------CCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCcc
Confidence 578899987 333322211111 3478999999999866544333333 688999999988752 2
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
....+..+++|++|++++|.+.... ......+++|++|++++|.+....... +..+++|+.|+++
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~ 160 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILL--------------DYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLE 160 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEEC--------------TTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEE
T ss_pred CcccccCCCCCCEEECCCCccccCC--------------hhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECC
Confidence 3344678899999999998773322 222356788999999998875432222 2468899999998
Q ss_pred CCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCC
Q 037505 226 SCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLP 305 (483)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (483)
++. +...+ ......+++|+.|+++++.... . .......+++|+.|+++++.....+........ +|++|+++++
T Consensus 161 ~n~-l~~~~--~~~l~~l~~L~~L~l~~n~i~~-~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n 234 (477)
T 2id5_A 161 KCN-LTSIP--TEALSHLHGLIVLRLRHLNINA-I-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHC 234 (477)
T ss_dssp SCC-CSSCC--HHHHTTCTTCCEEEEESCCCCE-E-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESS
T ss_pred CCc-CcccC--hhHhcccCCCcEEeCCCCcCcE-e-ChhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCC
Confidence 875 33222 1223445899999998764221 0 111234567888888875432111111111111 6777777763
Q ss_pred CCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCC
Q 037505 306 LDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSY 385 (483)
Q Consensus 306 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 385 (483)
.+....... ...+++|+.|+++++. ++......+ ...++|++|+++++........ ....+++|+.|+|++
T Consensus 235 -~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 235 -NLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSML--HELLRLQEIQLVGGQLAVVEPY----AFRGLNYLRVLNVSG 305 (477)
T ss_dssp -CCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTSC--TTCTTCCEEECCSSCCSEECTT----TBTTCTTCCEEECCS
T ss_pred -cccccCHHH-hcCccccCeeECCCCc-CCccChhhc--cccccCCEEECCCCccceECHH----HhcCcccCCEEECCC
Confidence 333222111 2446777777777653 333222111 1234777777777765543211 233567777777777
Q ss_pred CcCCCHHHHHHHHhcCCCCCEEEecCCC
Q 037505 386 NEMLLDKEFMAMLVSCNYLTELKLRGCK 413 (483)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 413 (483)
|. ++... ...+..+++|+.|++.+++
T Consensus 306 N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 NQ-LTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SC-CSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred Cc-CceeC-HhHcCCCcccCEEEccCCC
Confidence 65 33211 1122356677777777766
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=9.1e-17 Score=161.14 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=195.5
Q ss_pred CCcCcEEeccCch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 131 CNHLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 131 ~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
+++++.+++.++. .+....+..+++|++|++.+|.+.+++ ......+++|+.|++++|.++...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--------------TYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC--------------TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC--------------hHHhcCCCCCCEEECCCCcCCCCC
Confidence 6789999998875 234456789999999999999874332 123356789999999999875432
Q ss_pred HHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHH
Q 037505 209 VGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQ 288 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 288 (483)
.. .+..+++|+.|+++++. +...+ ......+++|++|+++++.... ..+.....+++|+.|+++++.....
T Consensus 116 ~~-~~~~l~~L~~L~L~~n~-l~~l~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~--- 186 (597)
T 3oja_B 116 PH-VFQNVPLLTVLVLERND-LSSLP--RGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHV--- 186 (597)
T ss_dssp TT-TTTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBC---
T ss_pred HH-HHcCCCCCCEEEeeCCC-CCCCC--HHHhccCCCCCEEEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCc---
Confidence 22 23578999999999875 33221 1223455899999999875221 1122345689999999986642211
Q ss_pred HHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhH
Q 037505 289 FISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLL 368 (483)
Q Consensus 289 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 368 (483)
.....+ +|+.|+++++ .+... ...++|+.|+++++. ++... ....++|+.|++++|......
T Consensus 187 ~~~~l~-~L~~L~l~~n-~l~~l------~~~~~L~~L~ls~n~-l~~~~-----~~~~~~L~~L~L~~n~l~~~~---- 248 (597)
T 3oja_B 187 DLSLIP-SLFHANVSYN-LLSTL------AIPIAVEELDASHNS-INVVR-----GPVNVELTILKLQHNNLTDTA---- 248 (597)
T ss_dssp CGGGCT-TCSEEECCSS-CCSEE------ECCTTCSEEECCSSC-CCEEE-----CSCCSCCCEEECCSSCCCCCG----
T ss_pred Chhhhh-hhhhhhcccC-ccccc------cCCchhheeeccCCc-ccccc-----cccCCCCCEEECCCCCCCCCh----
Confidence 022233 8999999883 44431 235689999999864 33221 112359999999999876531
Q ss_pred HHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHH
Q 037505 369 ASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVEL 448 (483)
Q Consensus 369 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~ 448 (483)
....+++|+.|+|++|. ++..... .+..+++|+.|++++|. ++. +......+++|+.|++++|. ++.. ..
T Consensus 249 --~l~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i--~~ 318 (597)
T 3oja_B 249 --WLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNH-LLHV--ER 318 (597)
T ss_dssp --GGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECTTSC-CCE--EECSSSCCTTCCEEECCSSC-CCCC--GG
T ss_pred --hhccCCCCCEEECCCCc-cCCCCHH-HhcCccCCCEEECCCCC-CCC--CCcccccCCCCcEEECCCCC-CCcc--Cc
Confidence 24478999999999987 4432222 23478999999999986 543 22222457999999999975 4422 11
Q ss_pred HHHcCCCCcEEEeeccCCcHH
Q 037505 449 FVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 449 l~~~~~~L~~L~l~~~~i~~~ 469 (483)
....+++|+.|++++|.++..
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCC
T ss_pred ccccCCCCCEEECCCCCCCCc
Confidence 124689999999999998754
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.2e-16 Score=148.08 Aligned_cols=128 Identities=9% Similarity=0.075 Sum_probs=68.5
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
+++++|+++++.++......+. .+++|++|+++++.- ..+..+..+++|++|++++|.+..++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-------------- 116 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-------------- 116 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC--------------
T ss_pred CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC--------------
Confidence 6777888877755433222222 467777777776542 23455667777777777776653222
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
....++|++|++++|.++..... .+..+++|+.|+++++. +...+........+++|++|+++++
T Consensus 117 ---~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 117 ---EKMPKTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ---SSCCTTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ---hhhcccccEEECCCCcccccCHh-HhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC
Confidence 01125677777777766533222 23456677777776654 2211111112223355555555543
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=1e-16 Score=154.75 Aligned_cols=297 Identities=14% Similarity=0.126 Sum_probs=202.3
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
+++|++|+++++.++.. +.+ ..+++|++|+++++.-... .+..+++|++|++++|.+.+++
T Consensus 41 l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~~--------------- 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD--------------- 101 (457)
T ss_dssp HTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC---------------
T ss_pred cCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCceee---------------
Confidence 58999999999966543 233 3689999999998762222 2778999999999998773221
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
...+++|++|++++|.++... +..+++|+.|+++++. +...+ ...+++|++|+++++..+... -
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~-----l~~l~~L~~L~l~~n~~~~~~----~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEID-----VSHNTQLTELDCHLNKKITKL----D 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCC-----CTTCTTCCEEECTTCSCCCCC----C
T ss_pred --cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceec-----cccCCcCCEEECCCCCccccc----c
Confidence 356789999999999886532 4678999999999875 33322 334589999999988544432 1
Q ss_pred HhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh
Q 037505 266 AENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA 345 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 345 (483)
...+++|+.|+++++.... +. +..++ +|+.|+++++ .+.... ...+++|++|+++++. ++... ..
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~-l~~ip-----~~ 230 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNK-LLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNK-LTEID-----VT 230 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCT-TCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCC-----CT
T ss_pred cccCCcCCEEECCCCccce-ec--cccCC-CCCEEECcCC-cCCeec----cccCCCCCEEECcCCc-ccccC-----cc
Confidence 3457899999998664222 11 33343 8999999884 444322 2458999999999864 55432 22
Q ss_pred cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEE----------ecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 037505 346 MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKL----------DLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGL 415 (483)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L----------~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i 415 (483)
..++|+.|+++++...... ...+++|+.| ++++|..+.... ...+++|+.|++++|..+
T Consensus 231 ~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTC
T ss_pred ccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCccc
Confidence 4569999999999876643 2245656555 444444322211 236789999999998632
Q ss_pred CHHH-----HHHH-HhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 416 TSMA-----VVSM-SKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 416 ~~~~-----~~~l-~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
.... +..+ ...+++|++|+++++ .++... ...|++|+.|++++|++++
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSSCCCB
T ss_pred ceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCCCCCC
Confidence 2100 0000 234688999999985 455432 3479999999999999886
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=1.1e-16 Score=148.44 Aligned_cols=103 Identities=11% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++|++|+++++.++......+ ..+++|++|+++++.- .....+..+++|++|++++|.+..++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-------------- 118 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-------------- 118 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC--------------
T ss_pred CCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC--------------
Confidence 677777777775543222222 2466777777766542 23445566777777777766553222
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
....++|++|++++|.++.... ..+..+++|+.|+++++.
T Consensus 119 ---~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 119 ---PNLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ---SSCCTTCCEEECCSSCCCCCCS-GGGSSCSSCCEEECCSCC
T ss_pred ---ccccccCCEEECCCCccCccCH-hHhCCCccCCEEECCCCc
Confidence 0111466666666665542111 112345666666665543
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=7e-17 Score=163.95 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=78.8
Q ss_pred CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhc
Q 037505 347 SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKS 426 (483)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 426 (483)
.++++.|+++++...... .+.....+++|++|+|++|. ++... ...+..+++|+.|+++++. ++.... .....
T Consensus 468 ~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~-L~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~~ 540 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQ-LEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDT-FPYKC 540 (635)
T ss_dssp CTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSC-CCBCCC-GGGTT
T ss_pred chhhhhhhhhhccccccc---CchhhhhccccCEEECCCCc-cCCcC-hHHHcCCCCCCEEECCCCc-CCCCCh-hHHhC
Confidence 358888998887644321 11224568899999999986 44321 1223478999999999875 443221 12356
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHHcC-CCCcEEEeeccCCcHH-----HHHHHhccC
Q 037505 427 CKRLQTVDIMHCCRVGAEAVELFVLNS-PQLRRVEVDENKLSDV-----VRTWASQKF 478 (483)
Q Consensus 427 ~~~L~~L~l~~c~~i~~~~~~~l~~~~-~~L~~L~l~~~~i~~~-----~~~~~~~~~ 478 (483)
+++|+.|+++++ .++......+ ..+ ++|+.|++++|.++.+ ...|.+...
T Consensus 541 l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 541 LNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTT
T ss_pred CCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCC
Confidence 899999999995 4543322222 245 5899999999877653 355555443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=4e-15 Score=143.45 Aligned_cols=287 Identities=17% Similarity=0.096 Sum_probs=153.5
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
.++|++|++++|.++... ...++|++|+++++.-.....+..+++|++|++.+|.+.+++
T Consensus 110 ~~~L~~L~l~~n~l~~l~-----~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp--------------- 169 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP--------------- 169 (454)
T ss_dssp CTTCCEEECCSSCCSCCC-----SCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC---------------
T ss_pred cCCCcEEECCCCccCccc-----CCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccC---------------
Confidence 367888888888554311 112588888888765222224677888888888888763322
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
....+|++|++++|.++.- .. +..+++|+.|+++++.. ...+ ...++|++|+++++.. . .++.
T Consensus 170 ---~~~~~L~~L~L~~n~l~~l--~~-~~~l~~L~~L~l~~N~l-~~l~------~~~~~L~~L~l~~n~l-~--~lp~- 232 (454)
T 1jl5_A 170 ---DLPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNSL-KKLP------DLPLSLESIVAGNNIL-E--ELPE- 232 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCC-SSCC------CCCTTCCEEECCSSCC-S--SCCC-
T ss_pred ---CCcccccEEECcCCcCCcC--cc-ccCCCCCCEEECCCCcC-CcCC------CCcCcccEEECcCCcC-C--cccc-
Confidence 1234788888888876542 12 35677888888877652 2111 1125788888887642 2 1222
Q ss_pred HhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh
Q 037505 266 AENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA 345 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 345 (483)
...+++|+.|+++++.... +. ....+|++|+++++ .+.. +....++|++|+++++. ++... .
T Consensus 233 ~~~l~~L~~L~l~~N~l~~-l~----~~~~~L~~L~l~~N-~l~~-----l~~~~~~L~~L~ls~N~-l~~l~------~ 294 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKT-LP----DLPPSLEALNVRDN-YLTD-----LPELPQSLTFLDVSENI-FSGLS------E 294 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CC----SCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSEES------C
T ss_pred cCCCCCCCEEECCCCcCCc-cc----ccccccCEEECCCC-cccc-----cCcccCcCCEEECcCCc-cCccc------C
Confidence 3457788888887653211 00 11237888888774 3332 11224678888888753 33311 1
Q ss_pred cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh
Q 037505 346 MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSK 425 (483)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 425 (483)
..++|+.|++++|...... ...++|++|++++|. ++. +...+++|+.|++++|. ++. +..
T Consensus 295 ~~~~L~~L~l~~N~l~~i~--------~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~-l~~--lp~--- 354 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNNK-LIE-----LPALPPRLERLIASFNH-LAE--VPE--- 354 (454)
T ss_dssp CCTTCCEEECCSSCCSEEC--------CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC--CCC---
T ss_pred cCCcCCEEECcCCcCCccc--------CCcCcCCEEECCCCc-ccc-----ccccCCcCCEEECCCCc-ccc--ccc---
Confidence 1247888888777654421 112478888887776 332 12235778888887765 432 111
Q ss_pred cCCCCCEEeccCCCCCCh-----HHH---------HHHHHcCCCCcEEEeeccCCcH
Q 037505 426 SCKRLQTVDIMHCCRVGA-----EAV---------ELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 426 ~~~~L~~L~l~~c~~i~~-----~~~---------~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
.+++|+.|+++++.- +. ..+ ..+...+++|+.|++++|.++.
T Consensus 355 ~l~~L~~L~L~~N~l-~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPL-REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCTTCCEEECCSSCC-SSCCCCCTTCCEEECCC------------------------
T ss_pred hhhhccEEECCCCCC-CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 367788888887542 22 111 0111123678888888887764
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=5.8e-15 Score=138.15 Aligned_cols=117 Identities=18% Similarity=0.101 Sum_probs=59.7
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHH--
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAM-- 397 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l-- 397 (483)
+++|++|+++++. ++..... .....++|+.|+++++.........+.. ....+.++.+++.++. +++..+..+
T Consensus 197 l~~L~~L~l~~n~-l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~-l~~~~l~~l~~ 271 (353)
T 2z80_A 197 IQNVSHLILHMKQ-HILLLEI--FVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVK-ITDESLFQVMK 271 (353)
T ss_dssp CSEEEEEEEECSC-STTHHHH--HHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCB-CCHHHHHHHHH
T ss_pred cccCCeecCCCCc-cccchhh--hhhhcccccEEECCCCcccccccccccc-ccccchhhcccccccc-ccCcchhhhHH
Confidence 5556666666543 2221111 1112346666666666554432211211 2345667777777665 566544433
Q ss_pred -HhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh
Q 037505 398 -LVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGA 443 (483)
Q Consensus 398 -~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~ 443 (483)
+..+++|+.|++++|. ++... ..+...+++|++|++++++...+
T Consensus 272 ~l~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQ-LKSVP-DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHhcccCCCEEECCCCC-CCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence 3467777777777764 44211 12224567777888877654443
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=4.6e-16 Score=143.19 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=48.8
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
++|+.|++++|........ ...+++|++|++++|. ++. +...+..+++|+.|++++++ ++...+......+
T Consensus 191 ~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~ 261 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKN 261 (317)
T ss_dssp TTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTC
T ss_pred ccCCEEECCCCcCCcchhh-----hcccCcccEEECcCCc-ccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhcc
Confidence 4677777776665543211 3356777777777775 332 22223456777777777776 5544555555666
Q ss_pred CCCCEEeccCC
Q 037505 428 KRLQTVDIMHC 438 (483)
Q Consensus 428 ~~L~~L~l~~c 438 (483)
++|+.++++++
T Consensus 262 ~~L~~l~l~~~ 272 (317)
T 3o53_A 262 QRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred ccceEEECCCc
Confidence 77777776644
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=4.2e-15 Score=139.09 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=56.3
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHH-HhcCCCCcEEeccccccccCcchhHHHHHhc
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALG-VAMSSGLEELALINCDVVDREPGLLASLGQN 374 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 374 (483)
+|++|+++++ .+.... ......+++|+.|+++++. ++......+. ....+.++.+++.++.........+......
T Consensus 199 ~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 199 NVSHLILHMK-QHILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp EEEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred cCCeecCCCC-ccccch-hhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 4555555552 232221 1222335666666666542 3322211111 1122356666666665544322223333456
Q ss_pred CCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 037505 375 LKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKG 414 (483)
Q Consensus 375 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 414 (483)
+++|++|++++|. ++.. ...++..+++|++|++++++.
T Consensus 276 l~~L~~L~Ls~N~-l~~i-~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 276 ISGLLELEFSRNQ-LKSV-PDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEECCCCC-CCcc-CHHHHhcCCCCCEEEeeCCCc
Confidence 7788888888776 3321 112234677888888888763
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=1e-15 Score=155.33 Aligned_cols=131 Identities=16% Similarity=0.134 Sum_probs=90.5
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hh
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PL 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~ 145 (483)
+.+++|+++ ...+..-.-..+ ..+++|++|+|++|.++......+ ..+++|++|+++++. .+
T Consensus 52 ~~~~~LdLs--------------~N~i~~l~~~~f-~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 52 FSTKNLDLS--------------FNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTCCEEECT--------------TSCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEE
T ss_pred cCCCEEEee--------------CCCCCCCCHHHH-hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCcCCCC
Confidence 479999998 333322111111 347899999999996654322222 368899999999876 22
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
...++.++++|++|++.+|.+..++ ......+++|++|++++|.+...........+++|+.|+++
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~--------------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLE--------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCST--------------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCC--------------hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 4456789999999999999874333 11235678999999999987543333445678999999998
Q ss_pred CCC
Q 037505 226 SCS 228 (483)
Q Consensus 226 ~~~ 228 (483)
++.
T Consensus 182 ~N~ 184 (635)
T 4g8a_A 182 SNK 184 (635)
T ss_dssp SSC
T ss_pred Ccc
Confidence 864
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=1.4e-12 Score=121.83 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=120.0
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh---cCCCCcEEeccccccccCcchhHHHHH
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA---MSSGLEELALINCDVVDREPGLLASLG 372 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~ 372 (483)
+|++|++++ +.+++.++..+...+++|++|++++| .+++.+...++.. ..++|++|++++|.....+...+....
T Consensus 102 ~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 677888877 46777777777766778888888886 5777777666532 235888888888877665433344445
Q ss_pred hcCCCCCEEecCCCcCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCChHHH
Q 037505 373 QNLKQLRKLDLSYNEMLLDKEFMAML---VSCNYLTELKLRGCKGLTSMAVVSMSK---SCKRLQTVDIMHCCRVGAEAV 446 (483)
Q Consensus 373 ~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~c~~i~~~~~ 446 (483)
...++|++|+|++|. +++.++..+. ..+++|+.|++++|. +++.+...+.. .+++|++|++++| .+++.++
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~ 256 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN-ELSSEGR 256 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHH
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHH
Confidence 678889999999987 7887765554 456789999999885 88877666554 4688999999985 5888888
Q ss_pred HHHHHcC-CC---CcEEE--eeccCCcHH
Q 037505 447 ELFVLNS-PQ---LRRVE--VDENKLSDV 469 (483)
Q Consensus 447 ~~l~~~~-~~---L~~L~--l~~~~i~~~ 469 (483)
..+.... +. |+.+. +.++.++++
T Consensus 257 ~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 257 QVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 8776432 12 77777 777888776
No 58
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.48 E-value=7.5e-14 Score=113.23 Aligned_cols=105 Identities=12% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHHHHh
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVS---CNYLTELKLRGCKGLTSMAVVSMSK 425 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~ 425 (483)
+|++|++++|.+.+.+ +..+ ..|++|++|+|++|..++|.++..+... +++|++|++++|+.+||.++..+.
T Consensus 62 ~L~~LDLs~~~Itd~G---L~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG---FDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGG---GGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHH---HHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 6777777777755543 3333 4789999999999988999999988852 568999999999999999998876
Q ss_pred cCCCCCEEeccCCCCCChHH--HHHHHHcCCCCcE
Q 037505 426 SCKRLQTVDIMHCCRVGAEA--VELFVLNSPQLRR 458 (483)
Q Consensus 426 ~~~~L~~L~l~~c~~i~~~~--~~~l~~~~~~L~~ 458 (483)
.+++|++|++++|+.|++.+ ...+.+++|+++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 48999999999999999876 4566778888763
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=5.3e-15 Score=137.08 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=145.6
Q ss_pred cCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHH
Q 037505 133 HLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGW 211 (483)
Q Consensus 133 ~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 211 (483)
+++.++++++.-. .+. .-.++++.|++.++.+..++ ......+++|++|++++|.++......
T Consensus 32 ~l~~l~~~~~~l~~lp~--~~~~~l~~L~L~~n~i~~~~--------------~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIK--------------DGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCC--SCCTTCCEEECCSSCCCCBC--------------TTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCc--cCCCCCeEEECCCCcCCEeC--------------hhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 6777777654311 111 12357888888887763322 112345678888888888765432222
Q ss_pred HHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChh--HHHHH
Q 037505 212 LWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSRE--GLLQF 289 (483)
Q Consensus 212 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~--~~~~~ 289 (483)
+..+++|++|+++++. +...+ ....++|++|+++++.. .. ........+++|+.|+++++.... .....
T Consensus 96 -~~~l~~L~~L~Ls~n~-l~~l~-----~~~~~~L~~L~l~~n~l-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 166 (330)
T 1xku_A 96 -FAPLVKLERLYLSKNQ-LKELP-----EKMPKTLQELRVHENEI-TK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166 (330)
T ss_dssp -TTTCTTCCEEECCSSC-CSBCC-----SSCCTTCCEEECCSSCC-CB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred -hcCCCCCCEEECCCCc-CCccC-----hhhcccccEEECCCCcc-cc-cCHhHhcCCccccEEECCCCcCCccCcChhh
Confidence 2467888888887754 32211 11126788888887542 21 112334557778888776554211 11122
Q ss_pred HHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHH
Q 037505 290 ISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLA 369 (483)
Q Consensus 290 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 369 (483)
+..++ +|++|+++++ .+..... ...++|++|+++++. ++......+. ..++|+.|+++++........
T Consensus 167 ~~~l~-~L~~L~l~~n-~l~~l~~----~~~~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~--- 234 (330)
T 1xku_A 167 FQGMK-KLSYIRIADT-NITTIPQ----GLPPSLTELHLDGNK-ITKVDAASLK--GLNNLAKLGLSFNSISAVDNG--- 234 (330)
T ss_dssp GGGCT-TCCEEECCSS-CCCSCCS----SCCTTCSEEECTTSC-CCEECTGGGT--TCTTCCEEECCSSCCCEECTT---
T ss_pred ccCCC-CcCEEECCCC-ccccCCc----cccccCCEEECCCCc-CCccCHHHhc--CCCCCCEEECCCCcCceeChh---
Confidence 23333 6777777663 2221000 113567777776643 3332222221 234677777776665443211
Q ss_pred HHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHh-----cCCCCCEEeccCCCCCChH
Q 037505 370 SLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSK-----SCKRLQTVDIMHCCRVGAE 444 (483)
Q Consensus 370 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~-----~~~~L~~L~l~~c~~i~~~ 444 (483)
....+++|++|++++|. ++. +...+..+++|++|++++|. ++......+.. ..+.++.|++++++ +...
T Consensus 235 -~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~ 308 (330)
T 1xku_A 235 -SLANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYW 308 (330)
T ss_dssp -TGGGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGG
T ss_pred -hccCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc-cccc
Confidence 12356677777777665 331 11112356677777777654 33222111110 12556667776644 2221
Q ss_pred HH-HHHHHcCCCCcEEEeeccC
Q 037505 445 AV-ELFVLNSPQLRRVEVDENK 465 (483)
Q Consensus 445 ~~-~~l~~~~~~L~~L~l~~~~ 465 (483)
.+ ...+..+++++.+++++|+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC----
T ss_pred ccCccccccccceeEEEecccC
Confidence 11 1112245666777766653
No 60
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=2.7e-12 Score=119.89 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=133.5
Q ss_pred cccEeeccCCCCCCHHHHHHHHHc----CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHH
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVK----FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASL 371 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 371 (483)
.|++|++++ +.++......+... +++|++|++++| .+++.++..+.... ++|++|++++|.....+...+...
T Consensus 73 ~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L-~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVF-LRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHH-HTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHH-HhccHhhcCCCCCCHHHHHHHHHH
Confidence 788999988 46777666665543 369999999997 47888877766433 389999999998876653334333
Q ss_pred H-hcCCCCCEEecCCCcCCCHHHHHHHH---hcCCCCCEEEecCCCCCCHHHHHHHH---hcCCCCCEEeccCCCCCChH
Q 037505 372 G-QNLKQLRKLDLSYNEMLLDKEFMAML---VSCNYLTELKLRGCKGLTSMAVVSMS---KSCKRLQTVDIMHCCRVGAE 444 (483)
Q Consensus 372 ~-~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~ 444 (483)
. ...++|++|+|++|. +++.+...++ ..+++|++|++++|. +++.++..+. ..+++|++|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 3 357899999999997 7887766654 568899999999987 8888876654 35689999999995 58988
Q ss_pred HHHHHHH---cCCCCcEEEeeccCCcHHH-HHHH
Q 037505 445 AVELFVL---NSPQLRRVEVDENKLSDVV-RTWA 474 (483)
Q Consensus 445 ~~~~l~~---~~~~L~~L~l~~~~i~~~~-~~~~ 474 (483)
+...+.. .+++|++|++++|.+++.+ ..++
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 8776654 5799999999999999984 4443
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=2.7e-13 Score=134.82 Aligned_cols=260 Identities=18% Similarity=0.123 Sum_probs=128.8
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
.+++.|+++++.++.... ...++|++|+++++.-.... ..+++|++|++++|.+..++
T Consensus 40 ~~l~~L~ls~n~L~~lp~----~l~~~L~~L~L~~N~l~~lp--~~l~~L~~L~Ls~N~l~~lp---------------- 97 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP---------------- 97 (622)
T ss_dssp HCCCEEECCSSCCSCCCS----CCCTTCSEEEECSCCCSCCC--CCCTTCCEEEECSCCCSCCC----------------
T ss_pred CCCcEEEecCCCcCccCh----hhCCCCcEEEecCCCCCCCC--CcCCCCCEEEcCCCcCCcCC----------------
Confidence 468899998885542111 01257888888776421111 15677888888777663222
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
..+++|++|++++|.++.-. ..+++|+.|+++++. +...+ ..+++|++|+++++.... +.
T Consensus 98 --~~l~~L~~L~Ls~N~l~~l~-----~~l~~L~~L~L~~N~-l~~lp------~~l~~L~~L~Ls~N~l~~------l~ 157 (622)
T 3g06_A 98 --VLPPGLLELSIFSNPLTHLP-----ALPSGLCKLWIFGNQ-LTSLP------VLPPGLQELSVSDNQLAS------LP 157 (622)
T ss_dssp --CCCTTCCEEEECSCCCCCCC-----CCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSCCSC------CC
T ss_pred --CCCCCCCEEECcCCcCCCCC-----CCCCCcCEEECCCCC-CCcCC------CCCCCCCEEECcCCcCCC------cC
Confidence 14567788888777664311 145677777777654 22211 112677777777653211 01
Q ss_pred hhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhc
Q 037505 267 ENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAM 346 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 346 (483)
..+++|+.|+++++ .+.... ..+++|+.|+++++. ++... ..
T Consensus 158 ~~~~~L~~L~L~~N--------------------------~l~~l~-----~~~~~L~~L~Ls~N~-l~~l~------~~ 199 (622)
T 3g06_A 158 ALPSELCKLWAYNN--------------------------QLTSLP-----MLPSGLQELSVSDNQ-LASLP------TL 199 (622)
T ss_dssp CCCTTCCEEECCSS--------------------------CCSCCC-----CCCTTCCEEECCSSC-CSCCC------CC
T ss_pred CccCCCCEEECCCC--------------------------CCCCCc-----ccCCCCcEEECCCCC-CCCCC------Cc
Confidence 12344555555433 222100 224555555555532 22110 01
Q ss_pred CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhc
Q 037505 347 SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKS 426 (483)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~ 426 (483)
.++|+.|.+++|...... ..+++|++|++++|. ++. + ...+++|+.|++++|. ++. +. ..
T Consensus 200 ~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~-L~~--l---p~~l~~L~~L~Ls~N~-L~~--lp---~~ 259 (622)
T 3g06_A 200 PSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGNR-LTS--L---PVLPSELKELMVSGNR-LTS--LP---ML 259 (622)
T ss_dssp CTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSC-CSC--CC---CC
T ss_pred cchhhEEECcCCcccccC--------CCCCCCCEEEccCCc-cCc--C---CCCCCcCcEEECCCCC-CCc--CC---cc
Confidence 235566666555444321 123556666666554 222 1 1344566666666553 331 11 13
Q ss_pred CCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 427 CKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 427 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
+++|+.|++++| .++. +..-+..+++|+.|++++|.++..
T Consensus 260 ~~~L~~L~Ls~N-~L~~--lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CTTCCEEECCSS-CCCS--CCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cccCcEEeCCCC-CCCc--CCHHHhhccccCEEEecCCCCCCc
Confidence 455666666654 2331 111123556666666666666554
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=9.2e-14 Score=133.94 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=119.8
Q ss_pred ccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhh
Q 037505 189 DTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAEN 268 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 268 (483)
..+++|++|++++|.++. +. ...++|+.|+++++. +...+ . ...+++|++|+++++.... +...
T Consensus 150 ~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~-l~~l~---~-~~~l~~L~~L~l~~N~l~~------l~~~ 213 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQ-LEELP---E-LQNLPFLTAIYADNNSLKK------LPDL 213 (454)
T ss_dssp TTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSSCC---C-CTTCTTCCEEECCSSCCSS------CCCC
T ss_pred CCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCc-CCcCc---c-ccCCCCCCEEECCCCcCCc------CCCC
Confidence 455666666666665542 11 123466666666553 22211 1 2334666777666653211 0112
Q ss_pred CCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCC
Q 037505 269 CDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSS 348 (483)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 348 (483)
.++|+.|+++++... .+.. +...+ +|++|+++++ .+.. +....++|++|+++++. ++... ...+
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~-~~~l~-~L~~L~l~~N-~l~~-----l~~~~~~L~~L~l~~N~-l~~l~------~~~~ 277 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE-LQNLP-FLTTIYADNN-LLKT-----LPDLPPSLEALNVRDNY-LTDLP------ELPQ 277 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCT-TCCEEECCSS-CCSS-----CCSCCTTCCEEECCSSC-CSCCC------CCCT
T ss_pred cCcccEEECcCCcCC-cccc-cCCCC-CCCEEECCCC-cCCc-----ccccccccCEEECCCCc-ccccC------cccC
Confidence 246666666654321 1111 22233 6777777663 3321 01124567777776643 33210 0124
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSC-NYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
+|+.|++++|...... ...++|+.|++++|. ++. + ..+ ++|+.|+++++. ++. +...+
T Consensus 278 ~L~~L~ls~N~l~~l~--------~~~~~L~~L~l~~N~-l~~-----i-~~~~~~L~~L~Ls~N~-l~~-----lp~~~ 336 (454)
T 1jl5_A 278 SLTFLDVSENIFSGLS--------ELPPNLYYLNASSNE-IRS-----L-CDLPPSLEELNVSNNK-LIE-----LPALP 336 (454)
T ss_dssp TCCEEECCSSCCSEES--------CCCTTCCEEECCSSC-CSE-----E-CCCCTTCCEEECCSSC-CSC-----CCCCC
T ss_pred cCCEEECcCCccCccc--------CcCCcCCEEECcCCc-CCc-----c-cCCcCcCCEEECCCCc-ccc-----ccccC
Confidence 7777777777654411 113578888888776 332 1 133 489999998875 442 22336
Q ss_pred CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 428 KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
++|+.|++++|. ++. +.. .+++|+.|++++|+++.
T Consensus 337 ~~L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 337 PRLERLIASFNH-LAE--VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSS
T ss_pred CcCCEEECCCCc-ccc--ccc---hhhhccEEECCCCCCCc
Confidence 889999999864 442 221 47899999999998876
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=7.7e-14 Score=128.26 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+++|++|+++++ .++......+.. ..++|+.|++++|....... ...+++|++|++++|. ++.. ..-+.
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~-l~~l--~~~~~ 211 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNK-LAFM--GPEFQ 211 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGG-GTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSC-CCEE--CGGGG
T ss_pred cCCCCEEECCCC-CCCcccHHHHhh-ccCcCCEEECCCCcCccccc------ccccccCCEEECCCCc-CCcc--hhhhc
Confidence 556666666664 233322222211 12366666666665543211 0135666666666665 3321 11133
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEee
Q 037505 400 SCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVD 462 (483)
Q Consensus 400 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~ 462 (483)
.+++|+.|++++|. ++. +......+++|+.|++++++ ++......+...+++|+.|++.
T Consensus 212 ~l~~L~~L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHH
T ss_pred ccCcccEEECcCCc-ccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECC
Confidence 55666666666654 332 11112345666666666643 3322334444455666555554
No 64
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=1.9e-13 Score=110.84 Aligned_cols=102 Identities=12% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhc---CCCCCEEeccCCCCCChHHHHHHHHc
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKS---CKRLQTVDIMHCCRVGAEAVELFVLN 452 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l~~c~~i~~~~~~~l~~~ 452 (483)
.+|++|++++|. ++|.++..+ ..|++|++|++++|..+||.++..+... +++|++|+|++|+.||+.++..+. .
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 469999999998 999999887 4899999999999999999999998873 578999999999999999999886 7
Q ss_pred CCCCcEEEeecc-CCcHHH--HHHHhccCcc
Q 037505 453 SPQLRRVEVDEN-KLSDVV--RTWASQKFIE 480 (483)
Q Consensus 453 ~~~L~~L~l~~~-~i~~~~--~~~~~~~~~~ 480 (483)
|++|++|++++| .+++.+ .+..++.-++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~ 168 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPS 168 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTT
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCC
Confidence 999999999996 688863 4444444443
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=1.8e-14 Score=133.64 Aligned_cols=129 Identities=16% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-
Q 037505 67 YPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL- 145 (483)
Q Consensus 67 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~- 145 (483)
.+.++.|+++ ...+....-..+ ..+++|++|++++|.++......+. .+++|++|+++++.-.
T Consensus 53 ~~~l~~L~l~--------------~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQ--------------NNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVE 116 (332)
T ss_dssp CTTCCEEECC--------------SSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCS
T ss_pred CCCCeEEECC--------------CCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCc
Confidence 3688999987 222322111111 3479999999999966644333333 6899999999987522
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHH-HHHHhCCCccEEec
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVG-WLWRSCKRLKKLQL 224 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~-~~~~~~~~L~~L~l 224 (483)
.+.. ..++|++|++.+|.+..++ ......+++|++|++++|.++..+.. .....+ +|+.|++
T Consensus 117 l~~~--~~~~L~~L~l~~n~i~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 117 IPPN--LPSSLVELRIHDNRIRKVP--------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCSS--CCTTCCEEECCSSCCCCCC--------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred cCcc--ccccCCEEECCCCccCccC--------------HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 1111 2278999999999874332 22235678999999999987642211 111122 6677776
Q ss_pred CCCC
Q 037505 225 KSCS 228 (483)
Q Consensus 225 ~~~~ 228 (483)
+++.
T Consensus 180 ~~n~ 183 (332)
T 2ft3_A 180 SEAK 183 (332)
T ss_dssp CSSB
T ss_pred cCCC
Confidence 6543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=8.3e-13 Score=131.38 Aligned_cols=243 Identities=17% Similarity=0.101 Sum_probs=137.1
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
++|++|++++|.++... . .+++|++|+++++.-.... ..+++|++|++++|.+..++
T Consensus 61 ~~L~~L~L~~N~l~~lp--~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~l~~l~---------------- 117 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP--A---LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNPLTHLP---------------- 117 (622)
T ss_dssp TTCSEEEECSCCCSCCC--C---CCTTCCEEEECSCCCSCCC--CCCTTCCEEEECSCCCCCCC----------------
T ss_pred CCCcEEEecCCCCCCCC--C---cCCCCCEEEcCCCcCCcCC--CCCCCCCEEECcCCcCCCCC----------------
Confidence 67888888877554211 1 4667888888776521111 15677888888777663322
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
..+++|+.|++++|.++.- ...+++|++|+++++. +...+ ...++|+.|+++++.. .. ++
T Consensus 118 --~~l~~L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~-l~~l~------~~~~~L~~L~L~~N~l-~~--l~--- 177 (622)
T 3g06_A 118 --ALPSGLCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQ-LASLP------ALPSELCKLWAYNNQL-TS--LP--- 177 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSCC-SC--CC---
T ss_pred --CCCCCcCEEECCCCCCCcC-----CCCCCCCCEEECcCCc-CCCcC------CccCCCCEEECCCCCC-CC--Cc---
Confidence 1456778888887766431 1234778888887764 32211 1236777777776532 21 11
Q ss_pred hhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhc
Q 037505 267 ENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAM 346 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 346 (483)
..+++|+.|+++++.... + ....++|+.|+++++ .+.. +...+++|+.|+++++ .++... ..
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l----~~~~~~L~~L~L~~N-~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp------~~ 239 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-L----PTLPSELYKLWAYNN-RLTS-----LPALPSGLKELIVSGN-RLTSLP------VL 239 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-C----CCCCTTCCEEECCSS-CCSS-----CCCCCTTCCEEECCSS-CCSCCC------CC
T ss_pred ccCCCCcEEECCCCCCCC-C----CCccchhhEEECcCC-cccc-----cCCCCCCCCEEEccCC-ccCcCC------CC
Confidence 345677777776543211 0 011236777777763 3321 1123467777777765 344321 23
Q ss_pred CCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 037505 347 SSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVS 422 (483)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~ 422 (483)
+++|+.|++++|...... . .+++|+.|+|++|. ++. +...+..+++|+.|++++|+ ++......
T Consensus 240 l~~L~~L~Ls~N~L~~lp-----~---~~~~L~~L~Ls~N~-L~~--lp~~l~~l~~L~~L~L~~N~-l~~~~~~~ 303 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLP-----M---LPSGLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNP-LSERTLQA 303 (622)
T ss_dssp CTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSC-CCS--CCGGGGGSCTTCEEECCSCC-CCHHHHHH
T ss_pred CCcCcEEECCCCCCCcCC-----c---ccccCcEEeCCCCC-CCc--CCHHHhhccccCEEEecCCC-CCCcCHHH
Confidence 357777777777655421 1 45677777777775 331 22223467777777777776 55544443
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.9e-13 Score=132.35 Aligned_cols=131 Identities=14% Similarity=0.164 Sum_probs=81.8
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
+++++|++++|.++......+. .+++|++|+++++. .+....+.++++|++|++.+|.+..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 139 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-------------- 139 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC--------------
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC--------------
Confidence 6889999998866543333333 57888888888765 223456677888888888888763322
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
......+++|++|++++|.+..... ..+..+++|+.|+++++..+...+. .....+++|+.|+++++.
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTSC
T ss_pred hhhhcccCCCCEEECCCCCcceeCH-hHHhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCCc
Confidence 1123456788888888887653221 1234677888888877654443221 122334677777777653
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=4.4e-14 Score=137.60 Aligned_cols=121 Identities=18% Similarity=0.101 Sum_probs=54.1
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
++|++|++++|.++......+ ..+++|++|+++++.-.....+..+++|++|++++|.+.+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---------------- 96 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---------------- 96 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE----------------
T ss_pred CCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC----------------
Confidence 455666666554332221112 135555555555543110001455566666666665542221
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
..++|+.|++++|.++.... ..+++|+.|+++++... ... +.....+++|+.|+++++
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~-~~~--~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKIT-MLR--DLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCC-SGG--GBCGGGGSSEEEEECTTS
T ss_pred ---CCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCC-CCC--chhhcCCCCCCEEECCCC
Confidence 12456666666665533221 13455666666554321 110 111222355666665554
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=130.23 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=83.7
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++++.|++++|.++......+. .+++|++|+++++. .+....+.++++|++|++.+|.+..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-------------- 128 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--------------
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--------------
Confidence 6789999998866543333333 57888888888765 224456778888889988888763332
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
......+++|++|++++|.+...... .+..+++|+.|+++++..+...+. .....+++|++|+++++.
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSY-AFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTT-TTTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSC
T ss_pred HhHhhccccCceeeCCCCcccccCHH-HhhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCc
Confidence 11234567888888888876532211 224678888888877654443221 122334777777777653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=4.5e-14 Score=129.53 Aligned_cols=247 Identities=20% Similarity=0.121 Sum_probs=134.4
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--h-HH-------HHHhcCCCcceEeccccccccccchhhh
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--L-YF-------NWVASFSCLKELSVYACDADEVENEVFR 175 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~-~~-------~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 175 (483)
.++|++|+++++.+. ....+... |++|+++++.- . .. -....+++|++|++++|.+.+..
T Consensus 42 ~~~L~~l~l~~n~l~--~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----- 111 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEA--DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTA----- 111 (312)
T ss_dssp EEECTTHHHHCCTTC--CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC-----
T ss_pred CCCceeEeecccccc--cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchh-----
Confidence 356777777777441 11122221 44445444321 0 11 12236899999999998773211
Q ss_pred ccCCCCCcchhc-cccCCCceEEEccCCcCChh--HHHHHHH-hCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeC
Q 037505 176 RYGETGLCSNEE-IDTVLGLESLCLSGIRSEDT--GVGWLWR-SCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKL 251 (483)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 251 (483)
.... ...+++|++|++++|.++.. .+..+.. ..++|++|+++++.. .... ......+++|++|++
T Consensus 112 --------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 112 --------PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS--CEQVRVFPALSTLDL 180 (312)
T ss_dssp --------CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCC--TTTCCCCSSCCEEEC
T ss_pred --------HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccch--HHHhccCCCCCEEEC
Confidence 1111 25678999999999987653 2222211 128999999988753 2221 112234588999999
Q ss_pred CCCCCCcHHHHHHHH--hhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCH--HHHHHHHHcCCCCcEEE
Q 037505 252 RTCRSIVDVVLLNLA--ENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNN--VHLSAVAVKFRGLSVLR 327 (483)
Q Consensus 252 ~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~ 327 (483)
+++.......+.... ..+++ |++|++++ +.+.. .....+...+++|++|+
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~-------------------------L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPT-------------------------LQVLALRN-AGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTT-------------------------CCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred CCCCcCcchHHHHHHHhccCCC-------------------------CCEEECCC-CcCcchHHHHHHHHhcCCCCCEEE
Confidence 886543332222222 34444 45555554 23331 11223334567777777
Q ss_pred ccCCCccChhh-HHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCE
Q 037505 328 LQSCCLVSGDG-LKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTE 406 (483)
Q Consensus 328 l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~ 406 (483)
++++. +++.. ...+ ...++|+.|++++|........ ..++|++|++++|. +++. .. +..+++|++
T Consensus 235 Ls~N~-l~~~~~~~~~--~~l~~L~~L~Ls~N~l~~ip~~-------~~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~ 300 (312)
T 1wwl_A 235 LSHNS-LRDAAGAPSC--DWPSQLNSLNLSFTGLKQVPKG-------LPAKLSVLDLSYNR-LDRN--PS-PDELPQVGN 300 (312)
T ss_dssp CTTSC-CCSSCCCSCC--CCCTTCCEEECTTSCCSSCCSS-------CCSEEEEEECCSSC-CCSC--CC-TTTSCEEEE
T ss_pred CCCCc-CCcccchhhh--hhcCCCCEEECCCCccChhhhh-------ccCCceEEECCCCC-CCCC--hh-HhhCCCCCE
Confidence 77653 33321 0110 1124788888888776532111 12678888888876 4432 12 446788888
Q ss_pred EEecCCC
Q 037505 407 LKLRGCK 413 (483)
Q Consensus 407 L~l~~~~ 413 (483)
|++++++
T Consensus 301 L~L~~N~ 307 (312)
T 1wwl_A 301 LSLKGNP 307 (312)
T ss_dssp EECTTCT
T ss_pred EeccCCC
Confidence 8888876
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=2.2e-14 Score=139.74 Aligned_cols=235 Identities=18% Similarity=0.144 Sum_probs=129.4
Q ss_pred CCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 131 CNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 131 ~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
+++|++|+++++.- ..+..+..+++|++|++++|.+.+.. ....+++|+.|++++|.++...
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------~l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------------DLESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE----------------ECTTCTTCCEEECCSSEEEEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc----------------ccccCCCCCEEEecCCcCCCCC
Confidence 44788888887652 24456778888888888877663211 1345677888888887765321
Q ss_pred HHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHH
Q 037505 209 VGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQ 288 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 288 (483)
..++|+.|+++++. +...+ ...+++|+.|+++++.... . .+.....++
T Consensus 97 ------~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N~l~~-~-~~~~~~~l~------------------ 144 (487)
T 3oja_A 97 ------VGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANNKITM-L-RDLDEGCRS------------------ 144 (487)
T ss_dssp ------ECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSSCCCS-G-GGBCGGGGS------------------
T ss_pred ------CCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCCCCCC-C-CchhhcCCC------------------
Confidence 23777888777754 22211 1123667777777653211 0 000112233
Q ss_pred HHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhH
Q 037505 289 FISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLL 368 (483)
Q Consensus 289 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 368 (483)
+|++|++++ +.+.......+...+++|+.|+++++. ++.... ....++|+.|++++|......+.
T Consensus 145 -------~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~-- 209 (487)
T 3oja_A 145 -------RVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSNKLAFMGPE-- 209 (487)
T ss_dssp -------SEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSSCCCEECGG--
T ss_pred -------CCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCc-cccccc----cccCCCCCEEECCCCCCCCCCHh--
Confidence 455555555 233332222233346777777777653 332210 01245777777777766543221
Q ss_pred HHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEec
Q 037505 369 ASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDI 435 (483)
Q Consensus 369 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 435 (483)
...+++|+.|++++|. ++. +...+..+++|+.|++++|+ ++...+......++.|+.+++
T Consensus 210 ---~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 210 ---FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ---GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHH
T ss_pred ---HcCCCCccEEEecCCc-Ccc--cchhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEec
Confidence 3356777888877776 332 22223356777788887776 554444444455555555554
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.34 E-value=4.6e-15 Score=136.10 Aligned_cols=84 Identities=19% Similarity=0.129 Sum_probs=45.1
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+++|+.|+++++. ++.... .+ ...++|++|++++|......+ .....+++|++|++++|. ++.. +... .
T Consensus 220 l~~L~~L~L~~N~-l~~~~~-~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~-ip~~-~ 288 (313)
T 1ogq_A 220 DKNTQKIHLAKNS-LAFDLG-KV--GLSKNLNGLDLRNNRIYGTLP----QGLTQLKFLHSLNVSFNN-LCGE-IPQG-G 288 (313)
T ss_dssp TSCCSEEECCSSE-ECCBGG-GC--CCCTTCCEEECCSSCCEECCC----GGGGGCTTCCEEECCSSE-EEEE-CCCS-T
T ss_pred CCCCCEEECCCCc-eeeecC-cc--cccCCCCEEECcCCcccCcCC----hHHhcCcCCCEEECcCCc-cccc-CCCC-c
Confidence 5666777766643 221111 11 123477777777776654322 223456777777777775 3211 1111 3
Q ss_pred cCCCCCEEEecCCCC
Q 037505 400 SCNYLTELKLRGCKG 414 (483)
Q Consensus 400 ~~~~L~~L~l~~~~~ 414 (483)
.+++|+.+++.+++.
T Consensus 289 ~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 289 NLQRFDVSAYANNKC 303 (313)
T ss_dssp TGGGSCGGGTCSSSE
T ss_pred cccccChHHhcCCCC
Confidence 566777777777663
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=3.1e-13 Score=130.86 Aligned_cols=82 Identities=26% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+++|++|+++++. +++.. .+ ...++|+.|++++|........ ....+++|+.|++++|. ++..... .+.
T Consensus 195 l~~L~~L~L~~n~-l~~~~--~~--~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~-~~~ 263 (452)
T 3zyi_A 195 LFNLKYLNLGMCN-IKDMP--NL--TPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQ-VSLIERN-AFD 263 (452)
T ss_dssp CTTCCEEECTTSC-CSSCC--CC--TTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSC-CCEECTT-TTT
T ss_pred CCCCCEEECCCCc-ccccc--cc--cccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCc-CceECHH-Hhc
Confidence 5566666666542 22211 11 1223566666666554433211 12345556666665554 2221111 122
Q ss_pred cCCCCCEEEecCC
Q 037505 400 SCNYLTELKLRGC 412 (483)
Q Consensus 400 ~~~~L~~L~l~~~ 412 (483)
.+++|+.|++++|
T Consensus 264 ~l~~L~~L~L~~N 276 (452)
T 3zyi_A 264 GLASLVELNLAHN 276 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4455555555554
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=9.9e-15 Score=133.71 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=53.7
Q ss_pred CCCCcEEEccCCCccChhhH-HHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 320 FRGLSVLRLQSCCLVSGDGL-KALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
+++|++|+++++. +++... ..+ ...++|+.|++++|....... .....+++|++|++++|. +++..... +
T Consensus 149 l~~L~~L~l~~n~-l~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~~~~~-~ 219 (306)
T 2z66_A 149 LSSLEVLKMAGNS-FQENFLPDIF--TELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNN-FFSLDTFP-Y 219 (306)
T ss_dssp CTTCCEEECTTCE-EGGGEECSCC--TTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSC-CSBCCSGG-G
T ss_pred CcCCCEEECCCCc-cccccchhHH--hhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCc-cCccChhh-c
Confidence 5566666666542 222100 011 123466677776665544321 112346677777777665 22211111 2
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcC-CCCCEEeccCCCC
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSC-KRLQTVDIMHCCR 440 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L~l~~c~~ 440 (483)
..+++|+.|++++|. ++......+ ..+ ++|++|++++++.
T Consensus 220 ~~l~~L~~L~L~~N~-l~~~~~~~~-~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 220 KCLNSLQVLDYSLNH-IMTSKKQEL-QHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTCTTCCEEECTTSC-CCBCSSSSC-CCCCTTCCEEECTTCCE
T ss_pred cCcccCCEeECCCCC-CcccCHHHH-HhhhccCCEEEccCCCe
Confidence 356677777777764 433221111 123 4677777777554
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=5.3e-14 Score=128.83 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=57.3
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh----HHHHHhcCCCcceEeccccccccccchhhhccCCCCC
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL----YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGL 182 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 182 (483)
++|++|+++++.++..... ....+++|++|+++++.-. ....+..+++|++|++++|.+..++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~------------ 94 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS------------ 94 (306)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE------------
T ss_pred CCCCEEECCCCccCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh------------
Confidence 5677777777644422211 1124667777777665411 1234456677777777777652221
Q ss_pred cchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC
Q 037505 183 CSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
.....+++|++|++++|.++..........+++|+.|+++++.
T Consensus 95 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 95 ---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 1123456777777777765432211123456677777776653
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=4.3e-13 Score=129.32 Aligned_cols=82 Identities=23% Similarity=0.192 Sum_probs=34.6
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+++|++|+++++. ++... .+ ...++|+.|++++|....... .....+++|++|++++|. ++..... .+.
T Consensus 184 l~~L~~L~L~~n~-l~~~~--~~--~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~ 252 (440)
T 3zyj_A 184 LSNLRYLNLAMCN-LREIP--NL--TPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQ-IQVIERN-AFD 252 (440)
T ss_dssp CSSCCEEECTTSC-CSSCC--CC--TTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCC-CCEECTT-SST
T ss_pred ccccCeecCCCCc-Ccccc--cc--CCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCc-eeEEChh-hhc
Confidence 5566666666542 22111 01 122355555555554433211 112345555555555554 2221111 112
Q ss_pred cCCCCCEEEecCC
Q 037505 400 SCNYLTELKLRGC 412 (483)
Q Consensus 400 ~~~~L~~L~l~~~ 412 (483)
.+++|+.|++++|
T Consensus 253 ~l~~L~~L~L~~N 265 (440)
T 3zyj_A 253 NLQSLVEINLAHN 265 (440)
T ss_dssp TCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 3455555555554
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.32 E-value=2.2e-13 Score=125.62 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=21.9
Q ss_pred ccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCC
Q 037505 189 DTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSG 229 (483)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 229 (483)
..+++|+.|++++|.++. +...+..+++|+.|++++|..
T Consensus 124 ~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 124 QQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp GGGTTCSEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETT
T ss_pred hccCCCCEEECCCCcccc--CcHHHhcCcCCCEEECCCCCC
Confidence 345566666666665541 222234566777777766543
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.30 E-value=2.2e-13 Score=123.33 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=69.6
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch--hhHHHHHhcCCCcceEeccccc-cccccchhhhccCCCCCc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR--PLYFNWVASFSCLKELSVYACD-ADEVENEVFRRYGETGLC 183 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 183 (483)
++|++|+++++.++......+ ..+++|++|+++++. .+....+..+++|++|++.+|. +..+.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~------------- 97 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD------------- 97 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-------------
T ss_pred CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-------------
Confidence 567777777775543322222 246677777776654 1234456667777777777765 32211
Q ss_pred chhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 184 SNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 184 ~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
......+++|++|++++|.++.... ..+..+++|++|+++++. +...+ ......+++|++|+++++
T Consensus 98 -~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 98 -PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNA-LQALP--DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp -TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS
T ss_pred -HHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCc-ccccC--HhHhccCCCccEEECCCC
Confidence 1122345677777777776543211 112456777777776654 22111 111223467777777664
No 79
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.27 E-value=3.5e-13 Score=124.26 Aligned_cols=233 Identities=19% Similarity=0.143 Sum_probs=130.8
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL 145 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 145 (483)
..+.++.|+++ ...+..- -..+. .+++|++|++++|.++ .++.....+++|++|+++++.-.
T Consensus 79 ~~~~l~~L~L~--------------~n~l~~l-p~~l~-~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 79 TQPGRVALELR--------------SVPLPQF-PDQAF-RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp TSTTCCEEEEE--------------SSCCSSC-CSCGG-GGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC
T ss_pred cccceeEEEcc--------------CCCchhc-Chhhh-hCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc
Confidence 56889999998 2222210 01122 2689999999999665 22222246889999999887532
Q ss_pred -HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEec
Q 037505 146 -YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQL 224 (483)
Q Consensus 146 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 224 (483)
.+..+..+++|++|++.+|...+.-...+.. .........+++|++|++++|.++. +...+..+++|+.|++
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLAS-----TDASGEHQGLVNLQSLRLEWTGIRS--LPASIANLQNLKSLKI 213 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-----EC-CCCEEESTTCCEEEEEEECCCC--CCGGGGGCTTCCEEEE
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhh-----ccchhhhccCCCCCEEECcCCCcCc--chHhhcCCCCCCEEEc
Confidence 4456788999999999987653111000000 0000112457889999999888752 2222467889999999
Q ss_pred CCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccC
Q 037505 225 KSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRL 304 (483)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 304 (483)
+++... ..+ . ....+++|++|++++|..... ++.....++ +|++|++++
T Consensus 214 ~~N~l~-~l~--~-~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~-------------------------~L~~L~L~~ 262 (328)
T 4fcg_A 214 RNSPLS-ALG--P-AIHHLPKLEELDLRGCTALRN--YPPIFGGRA-------------------------PLKRLILKD 262 (328)
T ss_dssp ESSCCC-CCC--G-GGGGCTTCCEEECTTCTTCCB--CCCCTTCCC-------------------------CCCEEECTT
T ss_pred cCCCCC-cCc--h-hhccCCCCCEEECcCCcchhh--hHHHhcCCC-------------------------CCCEEECCC
Confidence 886533 211 1 233457888888887653321 111122334 455555555
Q ss_pred CCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccc
Q 037505 305 PLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCD 359 (483)
Q Consensus 305 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 359 (483)
|....... .. ...+++|++|++++|...+.. ...+ ...++|+.+.+....
T Consensus 263 n~~~~~~p-~~-~~~l~~L~~L~L~~n~~~~~i-P~~l--~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 263 CSNLLTLP-LD-IHRLTQLEKLDLRGCVNLSRL-PSLI--AQLPANCIILVPPHL 312 (328)
T ss_dssp CTTCCBCC-TT-GGGCTTCCEEECTTCTTCCCC-CGGG--GGSCTTCEEECCGGG
T ss_pred CCchhhcc-hh-hhcCCCCCEEeCCCCCchhhc-cHHH--hhccCceEEeCCHHH
Confidence 43222110 01 134777888888776543221 1112 133467777766543
No 80
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.27 E-value=2.8e-14 Score=130.86 Aligned_cols=251 Identities=14% Similarity=0.067 Sum_probs=132.5
Q ss_pred CCCceEEccCCccch--hHHHHHHHhCCcCcEEeccC-ch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCC
Q 037505 107 SNLKHLRFSAGPVSV--SSLLSLSEACNHLTSLTVSL-SR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETG 181 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~--~~l~~l~~~~~~L~~L~l~~-~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 181 (483)
.++++|+++++.++. .....+ ..+++|++|++++ +. ...+..+..+++|++|++.+|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-------------
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-------------
Confidence 579999999986653 222222 3577888888874 32 1244556777888888887776521
Q ss_pred CcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHH
Q 037505 182 LCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVV 261 (483)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 261 (483)
........+++|++|++++|.++..... .+..+++|++|+++++......+ ..+....++|++|+++++..
T Consensus 116 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l----- 186 (313)
T 1ogq_A 116 -AIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRL----- 186 (313)
T ss_dssp -ECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEE-----
T ss_pred -cCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCee-----
Confidence 1111234456677777776665421111 12345666666665543210110 01111111444444443210
Q ss_pred HHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHH
Q 037505 262 LLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKA 341 (483)
Q Consensus 262 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 341 (483)
.. .+. . .+ ..++ |+.|+++++. ++......
T Consensus 187 ------------------------------------~~-------~~~-~---~~-~~l~-L~~L~Ls~N~-l~~~~~~~ 216 (313)
T 1ogq_A 187 ------------------------------------TG-------KIP-P---TF-ANLN-LAFVDLSRNM-LEGDASVL 216 (313)
T ss_dssp ------------------------------------EE-------ECC-G---GG-GGCC-CSEEECCSSE-EEECCGGG
T ss_pred ------------------------------------ec-------cCC-h---HH-hCCc-ccEEECcCCc-ccCcCCHH
Confidence 00 000 0 00 1133 7777777643 33221111
Q ss_pred HHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH
Q 037505 342 LGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVV 421 (483)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~ 421 (483)
+ ...++|+.|+++++...... .. ...+++|++|++++|. ++.. +...+..+++|+.|++++|. ++.. +.
T Consensus 217 ~--~~l~~L~~L~L~~N~l~~~~----~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~-ip 285 (313)
T 1ogq_A 217 F--GSDKNTQKIHLAKNSLAFDL----GK-VGLSKNLNGLDLRNNR-IYGT-LPQGLTQLKFLHSLNVSFNN-LCGE-IP 285 (313)
T ss_dssp C--CTTSCCSEEECCSSEECCBG----GG-CCCCTTCCEEECCSSC-CEEC-CCGGGGGCTTCCEEECCSSE-EEEE-CC
T ss_pred H--hcCCCCCEEECCCCceeeec----Cc-ccccCCCCEEECcCCc-ccCc-CChHHhcCcCCCEEECcCCc-cccc-CC
Confidence 1 13458889999888776442 21 3457889999998887 3322 12223477889999998875 3321 11
Q ss_pred HHHhcCCCCCEEeccCCCCCC
Q 037505 422 SMSKSCKRLQTVDIMHCCRVG 442 (483)
Q Consensus 422 ~l~~~~~~L~~L~l~~c~~i~ 442 (483)
.. ..+++|+.+++++++.+.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEE
T ss_pred CC-ccccccChHHhcCCCCcc
Confidence 11 346778888888866443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=119.10 Aligned_cols=55 Identities=29% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCK 413 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 413 (483)
++|++|++++|........ ..++|++|++++|. ++.. .....+++|+.|++++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~-------~~~~L~~L~Ls~N~-l~~~---~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKG-------LPAKLRVLDLSSNR-LNRA---PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSSCCCSCCSC-------CCSCCSCEECCSCC-CCSC---CCTTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCCCCCchhhh-------hcCCCCEEECCCCc-CCCC---chhhhCCCccEEECcCCC
Confidence 4677777777666532111 13677777777776 3321 113466777777777765
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=120.18 Aligned_cols=57 Identities=21% Similarity=0.151 Sum_probs=32.6
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccccc
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVD 362 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (483)
+|++|+++++ .+.... . ..+++|++|+++++. ++.... + ...++|+.|++++++..+
T Consensus 252 ~L~~L~Ls~N-~l~~lp-~---~~~~~L~~L~Ls~N~-l~~~~~--~--~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFA-GLEQVP-K---GLPAKLRVLDLSSNR-LNRAPQ--P--DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSS-CCCSCC-S---CCCSCCSCEECCSCC-CCSCCC--T--TSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCC-CCCchh-h---hhcCCCCEEECCCCc-CCCCch--h--hhCCCccEEECcCCCCCC
Confidence 6777777663 333110 0 113688888888753 443211 1 234588888888887654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=4e-11 Score=109.46 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
++|+.|++++|....... ...+++|+.|++++|. +++. .. +..+++|+.|++++|. +++.. . ...+
T Consensus 129 ~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~--~-l~~l 194 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP------LAGLTNLQYLSIGNAQ-VSDL--TP-LANLSKLTTLKADDNK-ISDIS--P-LASL 194 (308)
T ss_dssp TTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSC-CCCCG--G-GGGC
T ss_pred CCCCEEECCCCccCcCcc------ccCCCCccEEEccCCc-CCCC--hh-hcCCCCCCEEECCCCc-cCcCh--h-hcCC
Confidence 355555555554433211 2345666666666654 3321 11 3355666666666654 33211 1 2345
Q ss_pred CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 428 KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
++|++|++++|. +++.. . ...+++|+.|++++|.++.
T Consensus 195 ~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 195 PNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCeeec
Confidence 666666666643 33322 1 2356666666666665544
No 84
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.20 E-value=4e-12 Score=114.99 Aligned_cols=86 Identities=23% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV 399 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 399 (483)
+++|++|+++++. ++......+. ..++|+.|+++++....... .....+++|++|++++|. +++... ..+.
T Consensus 152 l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~ 222 (285)
T 1ozn_A 152 LGNLTHLFLHGNR-ISSVPERAFR--GLHSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFANN-LSALPT-EALA 222 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTT--TCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSC-CSCCCH-HHHT
T ss_pred CCCccEEECCCCc-ccccCHHHhc--CccccCEEECCCCcccccCH----hHccCcccccEeeCCCCc-CCcCCH-HHcc
Confidence 5566666666542 3322111111 23467777777666544321 123356777777777775 333222 2234
Q ss_pred cCCCCCEEEecCCCC
Q 037505 400 SCNYLTELKLRGCKG 414 (483)
Q Consensus 400 ~~~~L~~L~l~~~~~ 414 (483)
.+++|+.|++++++.
T Consensus 223 ~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 223 PLRALQYLRLNDNPW 237 (285)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred cCcccCEEeccCCCc
Confidence 677777777777663
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=5.6e-13 Score=122.21 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHH-hhccCCCcEEeCCCCCCCcH-HHHHHHHhhC
Q 037505 192 LGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANF-VKCSQGLEEVKLRTCRSIVD-VVLLNLAENC 269 (483)
Q Consensus 192 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~ 269 (483)
++|++|++++|.++...... +..+++|+.|+++++......+..... ...+++|++|+++++..... .....+...+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 55666666665543222111 134556666666554422211111111 13345666666665432211 1222333455
Q ss_pred CCCCeEEeecCCChhHH-HHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCC
Q 037505 270 DSLNSLLVYDGCSREGL-LQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSS 348 (483)
Q Consensus 270 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 348 (483)
++|+.|+++++...... ...+... ++|++|+++++ .++. +.. ...++|++|+++++ .+++.. .+ ...+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~--ip~--~~~~~L~~L~Ls~N-~l~~~p--~~--~~l~ 296 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFT-GLKQ--VPK--GLPAKLSVLDLSYN-RLDRNP--SP--DELP 296 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCC-TTCCEEECTTS-CCSS--CCS--SCCSEEEEEECCSS-CCCSCC--CT--TTSC
T ss_pred CCCCEEECCCCcCCcccchhhhhhc-CCCCEEECCCC-ccCh--hhh--hccCCceEEECCCC-CCCCCh--hH--hhCC
Confidence 66666666544311110 0001111 26777777773 3331 100 11257888888875 344331 11 2345
Q ss_pred CCcEEecccccccc
Q 037505 349 GLEELALINCDVVD 362 (483)
Q Consensus 349 ~L~~L~l~~~~~~~ 362 (483)
+|+.|++++++...
T Consensus 297 ~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 297 QVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECTTCTTTC
T ss_pred CCCEEeccCCCCCC
Confidence 88888888887654
No 86
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=3.2e-10 Score=104.92 Aligned_cols=140 Identities=14% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccc--ccC-cchhHHHHH--hcCCCCCEEecCCCcCCCHHHH
Q 037505 320 FRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDV--VDR-EPGLLASLG--QNLKQLRKLDLSYNEMLLDKEF 394 (483)
Q Consensus 320 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~-~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~ 394 (483)
.++|++|++..| .++..++..+.....|+|+.|+++.+.. ... ....+.... ..+|+|+.|+|.+|. +++...
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVV 269 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHH
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHH
Confidence 566777777654 3566666555544455777776643211 000 000011111 246777777777766 555444
Q ss_pred HHHHh--cCCCCCEEEecCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccC
Q 037505 395 MAMLV--SCNYLTELKLRGCKGLTSMAVVSMSK---SCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENK 465 (483)
Q Consensus 395 ~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~ 465 (483)
..++. .+|+|++|+++.+. +++.+...+.. .+++|+.|++++| .+++.++..+.+.+ ...+++++++
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 44443 45677777776653 77766655543 3577777777765 46777776666544 3446666655
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1.8e-10 Score=106.68 Aligned_cols=158 Identities=20% Similarity=0.181 Sum_probs=110.4
Q ss_pred HHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHH-hcCCCCCEEecCCCcC--C
Q 037505 313 LSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLG-QNLKQLRKLDLSYNEM--L 389 (483)
Q Consensus 313 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~--~ 389 (483)
+..+...+|+|+.|.++++..+.-.. + ..++|+.|.+..|...... +..+. ..+|+|++|+|+.+.. .
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~---~~~~L~~L~L~~~~l~~~~---l~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK---K---PRPNLKSLEIISGGLPDSV---VEDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS---C---BCTTCSEEEEECSBCCHHH---HHHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc---c---cCCCCcEEEEecCCCChHH---HHHHHHccCCCCcEEEEeccccccc
Confidence 33455678999999998863222111 1 2469999999988765443 44444 3689999999863211 1
Q ss_pred CH---HHHHHHH--hcCCCCCEEEecCCCCCCHHHHHHHHh--cCCCCCEEeccCCCCCChHHHHHHHH---cCCCCcEE
Q 037505 390 LD---KEFMAML--VSCNYLTELKLRGCKGLTSMAVVSMSK--SCKRLQTVDIMHCCRVGAEAVELFVL---NSPQLRRV 459 (483)
Q Consensus 390 ~~---~~~~~l~--~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~L~~L~l~~c~~i~~~~~~~l~~---~~~~L~~L 459 (483)
.+ .++..+. ..+|+|+.|++.+|. +++.....+.. .+++|+.|+++. +.+++.+...+.. .+++|+.|
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEE
Confidence 11 1122222 258999999999986 77766666654 468999999987 5689988777763 57999999
Q ss_pred EeeccCCcHH-HHHHHhccCccc
Q 037505 460 EVDENKLSDV-VRTWASQKFIEV 481 (483)
Q Consensus 460 ~l~~~~i~~~-~~~~~~~~~~~~ 481 (483)
++++|.+++. +..++++-++++
T Consensus 313 ~L~~n~i~d~~~~~l~~alg~~~ 335 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSLPMKI 335 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHCCSEE
T ss_pred ECCCCcCCHHHHHHHHHHcCCEE
Confidence 9999999999 555665567775
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.13 E-value=8.6e-11 Score=107.25 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=26.2
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEecccccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
++|++|+++++.+.... .+ ..+++|++|+++++.-.....+..+++|++|++++|.+
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~-~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GV-QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC
T ss_pred CCcCEEEeeCCCccCch--hh-hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC
Confidence 56666666666443211 11 23555555555554321111144555555555555443
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=2.3e-10 Score=97.03 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
+++|++|+++++.++... . ...+++|++|+++++.......+..+++|++|++.+|.+... ..
T Consensus 43 l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~--------------~~ 105 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD--------------KI 105 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGG--------------GS
T ss_pred cCCccEEeccCCCccChH--H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcc--------------cC
Confidence 467888888888655322 2 236788888888887533445677889999999988876321 11
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
.....+++|+.|++++|.+++.....+ ..+++|+.|++++|..+++.+ ....+++|++|+++++.. .+. . .
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i-~~~--~-~ 176 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGV-HDY--R-G 176 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCC-CCC--T-T
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCC-cCh--H-H
Confidence 223467889999999998876555544 578899999998876454432 234458899999987642 221 1 2
Q ss_pred HhhCCCCCeEEeecC
Q 037505 266 AENCDSLNSLLVYDG 280 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~ 280 (483)
...+++|+.|+++++
T Consensus 177 l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GGGCSSCCEEEECBC
T ss_pred hccCCCCCEEEeeCc
Confidence 345666666666543
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=6.4e-11 Score=100.49 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=100.4
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|++|+++++ .+.+.. . ...+++|++|+++++ .+++.. .+ ...++|+.|++++|........ ....+
T Consensus 45 ~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~~--~l--~~l~~L~~L~l~~n~l~~~~~~----~l~~l 111 (197)
T 4ezg_A 45 SLTYITLANI-NVTDLT--G-IEYAHNIKDLTINNI-HATNYN--PI--SGLSNLERLRIMGKDVTSDKIP----NLSGL 111 (197)
T ss_dssp TCCEEEEESS-CCSCCT--T-GGGCTTCSEEEEESC-CCSCCG--GG--TTCTTCCEEEEECTTCBGGGSC----CCTTC
T ss_pred CccEEeccCC-CccChH--H-HhcCCCCCEEEccCC-CCCcch--hh--hcCCCCCEEEeECCccCcccCh----hhcCC
Confidence 4556666552 332211 1 245888999999887 344332 22 2346999999999887653211 13468
Q ss_pred CCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCC
Q 037505 376 KQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQ 455 (483)
Q Consensus 376 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~ 455 (483)
++|++|++++|. +++.....+ ..+++|++|++++|..+++.. ....+++|++|++++|. +++.. . ...+++
T Consensus 112 ~~L~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~--~-l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR--G-IEDFPK 182 (197)
T ss_dssp TTCCEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT--T-GGGCSS
T ss_pred CCCCEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH--H-hccCCC
Confidence 999999999997 666545444 488999999999987455532 24568999999999965 55532 2 347999
Q ss_pred CcEEEeeccCCcH
Q 037505 456 LRRVEVDENKLSD 468 (483)
Q Consensus 456 L~~L~l~~~~i~~ 468 (483)
|+.|++++|++++
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999999875
No 91
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=4.3e-09 Score=87.90 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=85.4
Q ss_pred HHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCH
Q 037505 312 HLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLD 391 (483)
Q Consensus 312 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 391 (483)
.+..+....++|++|+++++..+++.+...++ ......++|++|+|++|. +++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~--------------------------~~L~~~~~L~~L~Ls~n~-i~~ 79 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACA--------------------------EALKTNTYVKKFSIVGTR-SND 79 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHH--------------------------HHHTTCCSCCEEECTTSC-CCH
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH--------------------------HHHHhCCCcCEEECcCCC-CCh
Confidence 34444455666666666665346666555543 223345677777777776 677
Q ss_pred HHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHhc---CCCCCEEec--cCCCCCChHHHHHHH---HcCCCCcEEE
Q 037505 392 KEFMAMLV---SCNYLTELKLRGCKGLTSMAVVSMSKS---CKRLQTVDI--MHCCRVGAEAVELFV---LNSPQLRRVE 460 (483)
Q Consensus 392 ~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~L~~L~l--~~c~~i~~~~~~~l~---~~~~~L~~L~ 460 (483)
++...++. ..++|++|++++|. +++.+...+... .+.|++|++ ++ +.+++.+...+. ...++|++|+
T Consensus 80 ~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 80 PVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEe
Confidence 66655543 45678888888765 777776666553 467888888 54 567887755554 3467888888
Q ss_pred eeccCCcHHH
Q 037505 461 VDENKLSDVV 470 (483)
Q Consensus 461 l~~~~i~~~~ 470 (483)
+++|.+++.+
T Consensus 158 L~~n~i~~~~ 167 (185)
T 1io0_A 158 YHFTQQGPRL 167 (185)
T ss_dssp CCCSSHHHHH
T ss_pred ccCCCCChHH
Confidence 8888888774
No 92
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.01 E-value=8.2e-09 Score=86.17 Aligned_cols=131 Identities=15% Similarity=0.147 Sum_probs=85.2
Q ss_pred hHHHHHHHhccccccEeeccCCCCCCHHHHHHHHH---cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccc
Q 037505 284 EGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAV---KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDV 360 (483)
Q Consensus 284 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 360 (483)
+.+...+...+ .|++|+++++..+++.+...+.. ..++|++|+++++ .+++.+...++.
T Consensus 26 ~~l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~---------------- 87 (185)
T 1io0_A 26 ETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAE---------------- 87 (185)
T ss_dssp HHHHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHH----------------
T ss_pred HHHHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHH----------------
Confidence 44555666655 89999999855899888777653 4678999999986 478877766542
Q ss_pred ccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh---cCCCCCEEEe--cCCCCCCHHHHHHHHh---cCCCCCE
Q 037505 361 VDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV---SCNYLTELKL--RGCKGLTSMAVVSMSK---SCKRLQT 432 (483)
Q Consensus 361 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~l--~~~~~i~~~~~~~l~~---~~~~L~~ 432 (483)
.....+.|++|+|++|. +++.+...++. ..++|++|++ +++. +++.+...+.+ ..+.|++
T Consensus 88 ----------~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 88 ----------MLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp ----------HHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCE
T ss_pred ----------HHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCE
Confidence 12234566777776665 66666555543 3456777777 4443 66666544433 3467777
Q ss_pred EeccCCCCCChHH
Q 037505 433 VDIMHCCRVGAEA 445 (483)
Q Consensus 433 L~l~~c~~i~~~~ 445 (483)
|++++| .+++.+
T Consensus 156 L~L~~n-~i~~~~ 167 (185)
T 1io0_A 156 FGYHFT-QQGPRL 167 (185)
T ss_dssp EECCCS-SHHHHH
T ss_pred EeccCC-CCChHH
Confidence 777764 355544
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.98 E-value=7.3e-11 Score=105.75 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=59.6
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
++|++|++.++.++... .+ ..+++|++|+++++.-.....+..+++|++|++.+|.+..+. ..
T Consensus 41 ~~L~~L~l~~~~i~~~~--~l-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~--------------~~ 103 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ--GI-QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP--------------NG 103 (272)
T ss_dssp TTCCEEECTTSCCCCCT--TG-GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC--------------TT
T ss_pred cceeeeeeCCCCccccc--cc-ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC--------------hh
Confidence 55666666655333211 11 235566666665544222234556666666666666552221 11
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
....+++|++|++++|.++.... ..+..+++|+.|+++++. +...+ ......+++|++|+++++
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQ-LQSLP--KGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC--TTTTTTCTTCCEEECCSS
T ss_pred HhcCCcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCc-cCccC--HHHhccCccCCEEECCCC
Confidence 12344566666666665532111 112345666666666553 22111 111223356666666654
No 94
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.96 E-value=2.7e-10 Score=91.85 Aligned_cols=86 Identities=23% Similarity=0.185 Sum_probs=38.5
Q ss_pred cCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHH-HHHHHhh
Q 037505 190 TVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVV-LLNLAEN 268 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~ 268 (483)
.+++|+.|++++|.++.. +......+++|+.|+++++. ++..+... ....+++|++|+++++....... .......
T Consensus 62 ~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIE-PLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp CCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHG-GGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred cCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHH-HHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 344555555555554432 22333445666666665544 33221111 12333566666666543111111 1123445
Q ss_pred CCCCCeEEee
Q 037505 269 CDSLNSLLVY 278 (483)
Q Consensus 269 ~~~L~~L~l~ 278 (483)
+++|+.|+++
T Consensus 139 l~~L~~L~l~ 148 (149)
T 2je0_A 139 LPQLTYLDGY 148 (149)
T ss_dssp CTTCCEETTB
T ss_pred CCCcccccCC
Confidence 6666666553
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=9.5e-11 Score=105.33 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=21.6
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCC 332 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 332 (483)
+|++|+++++ .+..... .+...+++|++|+++++.
T Consensus 201 ~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred cccEEECCCC-ceeecCH-hHhcccccccEEEccCCc
Confidence 6788888774 3432111 122458899999998753
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=1e-10 Score=105.20 Aligned_cols=207 Identities=17% Similarity=0.055 Sum_probs=102.2
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++|++|+++++.++......+. .+++|++|+++++.- +....+..+++|++|++++|.+..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 92 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-------------- 92 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--------------
T ss_pred CCccEEECCCCcccccCHhHhc-cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC--------------
Confidence 4677777777755433322222 466777777766541 12334566677777777776652221
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCc--HHHH
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIV--DVVL 262 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l 262 (483)
......+++|++|++++|.+....... +..+++|+.|+++++. +....+. .....+++|++|+++++.... ...+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred hhhhcCCccccEEECCCCCccccCchh-cccCCCCCEEECcCCc-cceecCc-hhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 112234566777777666553211111 2345667777766544 2211100 112233566666666543111 0111
Q ss_pred HHHHhhCCCCCeEEeecCCChhHHHHHHHhcccccc-EeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHH
Q 037505 263 LNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQ-KLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKA 341 (483)
Q Consensus 263 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 341 (483)
.. +++|+ .+. +|++++ +.+...... .....+|+.|+++++. ++......
T Consensus 170 ~~----l~~L~----------------------~l~l~L~ls~-n~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~ 219 (276)
T 2z62_A 170 RV----LHQMP----------------------LLNLSLDLSL-NPMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGI 219 (276)
T ss_dssp HH----HHTCT----------------------TCCEEEECCS-SCCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTT
T ss_pred hh----hhhcc----------------------ccceeeecCC-CcccccCcc--ccCCCcccEEECCCCc-eeecCHhH
Confidence 11 11111 111 555555 223211100 0123489999999864 44332221
Q ss_pred HHHhcCCCCcEEeccccccccC
Q 037505 342 LGVAMSSGLEELALINCDVVDR 363 (483)
Q Consensus 342 ~~~~~~~~L~~L~l~~~~~~~~ 363 (483)
+ ...++|+.|++++++...+
T Consensus 220 ~--~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 220 F--DRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp T--TTCCSCCEEECCSSCBCCC
T ss_pred h--cccccccEEEccCCccccc
Confidence 2 2346999999999887654
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=3.1e-09 Score=95.97 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=77.0
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
.+++|++|++++|.++.... ...+++|++|+++++.-.....+..+++|++|++.+|.+..+
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--------------- 127 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--------------- 127 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---------------
T ss_pred cCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC---------------
Confidence 35777777777775443221 235667777777665532333466667777777776655221
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN 264 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 264 (483)
.....+++|+.|++++|.++.. ..+..+++|+.|+++++. +..... ...+++|++|+++++.. .+ +..
T Consensus 128 -~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~----l~~l~~L~~L~L~~N~i-~~--l~~ 195 (291)
T 1h6t_A 128 -NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSKNHI-SD--LRA 195 (291)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCC-CB--CGG
T ss_pred -hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCc-cccchh----hcCCCccCEEECCCCcC-CC--Chh
Confidence 1223456677777777665442 123456677777776654 322211 23346677777766532 21 111
Q ss_pred HHhhCCCCCeEEeec
Q 037505 265 LAENCDSLNSLLVYD 279 (483)
Q Consensus 265 ~~~~~~~L~~L~l~~ 279 (483)
...+++|+.|++++
T Consensus 196 -l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 196 -LAGLKNLDVLELFS 209 (291)
T ss_dssp -GTTCTTCSEEEEEE
T ss_pred -hccCCCCCEEECcC
Confidence 33455555555543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=5.7e-10 Score=100.83 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=73.8
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|++|+++++. +++.. .+ ...++|+.|++++|...... ....+++|+.|++++|. +++. ..+
T Consensus 88 ~l~~L~~L~l~~n~-l~~~~--~l--~~l~~L~~L~L~~n~i~~~~------~l~~l~~L~~L~l~~n~-l~~~---~~l 152 (291)
T 1h6t_A 88 NLKNLGWLFLDENK-VKDLS--SL--KDLKKLKSLSLEHNGISDIN------GLVHLPQLESLYLGNNK-ITDI---TVL 152 (291)
T ss_dssp TCTTCCEEECCSSC-CCCGG--GG--TTCTTCCEEECTTSCCCCCG------GGGGCTTCCEEECCSSC-CCCC---GGG
T ss_pred cCCCCCEEECCCCc-CCCCh--hh--ccCCCCCEEECCCCcCCCCh------hhcCCCCCCEEEccCCc-CCcc---hhh
Confidence 36667777776643 33211 11 23347777777777655421 12356777777777776 3332 223
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcH
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
..+++|+.|++++|. +++.. . ...+++|+.|++++| .+++.. . ...+++|+.|++++|.+++
T Consensus 153 ~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~L~~N-~i~~l~--~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQ-ISDIV--P-LAGLTKLQNLYLSKN-HISDLR--A-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGCTTCSEEECCSSC-CCCCG--G-GTTCTTCCEEECCSS-CCCBCG--G-GTTCTTCSEEEEEEEEEEC
T ss_pred ccCCCCCEEEccCCc-cccch--h-hcCCCccCEEECCCC-cCCCCh--h-hccCCCCCEEECcCCcccC
Confidence 467777777777765 44322 1 445777777777774 344422 2 2467778888887776654
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=1.7e-10 Score=104.17 Aligned_cols=201 Identities=19% Similarity=0.098 Sum_probs=100.9
Q ss_pred hcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCC
Q 037505 151 ASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGI 230 (483)
Q Consensus 151 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 230 (483)
..+++++++++.++.+..++ ....++++.|++++|.++...... +..+++|+.|+++++. +
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip-----------------~~~~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~-l 67 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALP-----------------PDLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAE-L 67 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCC-----------------SCCCTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSC-C
T ss_pred cccCCccEEECCCCCCCcCC-----------------CCCCCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCc-c
Confidence 45667777777766553222 012356788888888765432222 2457788888887754 3
Q ss_pred CchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCCCCCCH
Q 037505 231 GDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLPLDLNN 310 (483)
Q Consensus 231 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 310 (483)
+..+. ...+++|++|+++++.. . .++.....+++|+.|+++++ .+..
T Consensus 68 ~~~~~----~~~l~~L~~L~Ls~N~l-~--~l~~~~~~l~~L~~L~l~~N--------------------------~l~~ 114 (290)
T 1p9a_G 68 TKLQV----DGTLPVLGTLDLSHNQL-Q--SLPLLGQTLPALTVLDVSFN--------------------------RLTS 114 (290)
T ss_dssp CEEEC----CSCCTTCCEEECCSSCC-S--SCCCCTTTCTTCCEEECCSS--------------------------CCCC
T ss_pred CcccC----CCCCCcCCEEECCCCcC-C--cCchhhccCCCCCEEECCCC--------------------------cCcc
Confidence 32211 13447777787776532 1 11112233444555544432 1111
Q ss_pred HHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCC
Q 037505 311 VHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLL 390 (483)
Q Consensus 311 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 390 (483)
.... ....+++|++|+++++. ++......+ ...++|+.|+++++.......+ ....+++|+.|++++|. ++
T Consensus 115 l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 115 LPLG-ALRGLGELQELYLKGNE-LKTLPPGLL--TPTPKLEKLSLANNNLTELPAG----LLNGLENLDTLLLQENS-LY 185 (290)
T ss_dssp CCSS-TTTTCTTCCEEECTTSC-CCCCCTTTT--TTCTTCCEEECTTSCCSCCCTT----TTTTCTTCCEEECCSSC-CC
T ss_pred cCHH-HHcCCCCCCEEECCCCC-CCccChhhc--ccccCCCEEECCCCcCCccCHH----HhcCcCCCCEEECCCCc-CC
Confidence 0000 01235667777776642 332111111 1234677777777665543221 23356777777777765 33
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCC
Q 037505 391 DKEFMAMLVSCNYLTELKLRGCKG 414 (483)
Q Consensus 391 ~~~~~~l~~~~~~L~~L~l~~~~~ 414 (483)
. +..-+...++|+.|++.+++.
T Consensus 186 ~--ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 186 T--IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp C--CCTTTTTTCCCSEEECCSCCB
T ss_pred c--cChhhcccccCCeEEeCCCCc
Confidence 1 111112445677777777663
No 100
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.89 E-value=1.8e-10 Score=103.07 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=51.1
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|++|+++++. ++......+ ...++|+.|+++++........ ....+++|++|++++|. ++... ...+
T Consensus 131 ~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~-~~~~ 201 (270)
T 2o6q_A 131 SLTKLTYLSLGYNE-LQSLPKGVF--DKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQ-LKRVP-EGAF 201 (270)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSC-CSCCC-TTTT
T ss_pred cCcCCCEEECCCCc-CCccCHhHc--cCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCc-CCcCC-HHHh
Confidence 36777777777653 332221111 1235788888887766554321 13457888888888875 33211 1123
Q ss_pred hcCCCCCEEEecCCC
Q 037505 399 VSCNYLTELKLRGCK 413 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~ 413 (483)
..+++|+.|++.+++
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 467888888888776
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.87 E-value=4.2e-10 Score=100.70 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=48.2
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
+++++|+++++.++......+. .+++|++|+++++.- +....+..+++|++|++.+|.+..++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-------------- 101 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-------------- 101 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSS-SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCCEEECcCCCCCeeCHHHhc-CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC--------------
Confidence 4566666666644322211111 355566666655431 11222345566666666665542221
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSC 227 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 227 (483)
......+++|++|++++|.++..... .+..+++|+.|+++++
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYN 143 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred HhHcccccCCCEEECCCCccCeeCHH-HhCcCcCCCEEECCCC
Confidence 11123345566666666654322111 1134556666666554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.86 E-value=5e-09 Score=104.13 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
.+++|+.|+|++|.+..... ...+++|+.|+++++.-..+..+..+++|+.|++.+|.+..+
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--------------- 124 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--------------- 124 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---------------
T ss_pred cCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC---------------
Confidence 36777777777774443221 235667777777666433333456667777777776655221
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHH
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLN 264 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~ 264 (483)
+....+++|+.|++++|.++.. ..+..+++|+.|+++++. +..... ...+++|++|+|+++.. .+. .
T Consensus 125 -~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N~i-~~l--~- 191 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP----LAGLTKLQNLYLSKNHI-SDL--R- 191 (605)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSC-CCCCGG----GTTCTTCCEEECCSSCC-CBC--G-
T ss_pred -ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCc-CCCchh----hccCCCCCEEECcCCCC-CCC--h-
Confidence 1234556677777777766542 223456677777776654 222211 23346777777766532 211 1
Q ss_pred HHhhCCCCCeEEeec
Q 037505 265 LAENCDSLNSLLVYD 279 (483)
Q Consensus 265 ~~~~~~~L~~L~l~~ 279 (483)
....+++|+.|++++
T Consensus 192 ~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 192 ALAGLKNLDVLELFS 206 (605)
T ss_dssp GGTTCTTCSEEECCS
T ss_pred HHccCCCCCEEEccC
Confidence 133455666666653
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.85 E-value=5.5e-10 Score=92.06 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=8.8
Q ss_pred CCCCceEEccCCccc
Q 037505 106 CSNLKHLRFSAGPVS 120 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~ 120 (483)
.++|++|++++|.++
T Consensus 23 ~~~L~~L~l~~n~l~ 37 (168)
T 2ell_A 23 PAAVRELVLDNCKSN 37 (168)
T ss_dssp TTSCSEEECCSCBCB
T ss_pred cccCCEEECCCCCCC
Confidence 355666666666444
No 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.84 E-value=4.7e-10 Score=100.46 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=101.4
Q ss_pred hCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHH
Q 037505 130 ACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGV 209 (483)
Q Consensus 130 ~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l 209 (483)
.+++|++|.+.++.-.....+..+++|++|++.+|.+.++ .....+++|++|++++|.++....
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~----------------~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI----------------SALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC----------------GGGTTCTTCCEEECTTSCCCCCCT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc----------------hhhcCCCCCCEEECCCCccCccCh
Confidence 4678899988877543445577888899999988876221 123566788888888887653221
Q ss_pred HHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCCChhHHHHH
Q 037505 210 GWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGCSREGLLQF 289 (483)
Q Consensus 210 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 289 (483)
..+..+++|+.|+++++. +.... ......+++|++|+++++. +... .......+++|+.|
T Consensus 103 -~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L-------------- 162 (272)
T 3rfs_A 103 -GVFDKLTNLKELVLVENQ-LQSLP--DGVFDKLTNLTYLNLAHNQ-LQSL-PKGVFDKLTNLTEL-------------- 162 (272)
T ss_dssp -TTTTTCTTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEE--------------
T ss_pred -hHhcCCcCCCEEECCCCc-CCccC--HHHhccCCCCCEEECCCCc-cCcc-CHHHhccCccCCEE--------------
Confidence 112467888888888765 22211 1122344778888887763 2110 01112334445554
Q ss_pred HHhccccccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEecccccccc
Q 037505 290 ISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVD 362 (483)
Q Consensus 290 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 362 (483)
+++++ .+..... .....+++|++|+++++. ++......+ ...++|+.|++++|+...
T Consensus 163 -----------~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 163 -----------DLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPDGVF--DRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp -----------ECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred -----------ECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCHHHH--hCCcCCCEEEccCCCccc
Confidence 44442 2221110 111336777888877753 333221111 133578888888776543
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.82 E-value=1.5e-09 Score=95.17 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=31.4
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch-h--hHHHHHhcCCCcceEeccc-ccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR-P--LYFNWVASFSCLKELSVYA-CDA 166 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~--~~~~~l~~~~~L~~L~l~~-~~~ 166 (483)
++|++|+++++.++......+ ..+++|++|+++++. - +....+..+++|++|++.+ +.+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred CcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 467888887775543222112 245666666666553 1 1223445566666666665 444
No 106
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.81 E-value=2e-09 Score=68.84 Aligned_cols=40 Identities=38% Similarity=0.411 Sum_probs=35.3
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhccccc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTS 45 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~ 45 (483)
+.||+|++.+||+||+.+ |++++++|||+|+.+......|
T Consensus 10 ~~LP~eil~~I~~~L~~~---dl~~~~~Vck~w~~~~~~~~lW 49 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLCLP---ELLKVSGVCKRWYRLASDESLW 49 (53)
T ss_dssp CSSCHHHHHHHHTTSCGG---GHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHCCHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCChHHH
Confidence 479999999999999999 9999999999999997654333
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.78 E-value=5e-10 Score=98.99 Aligned_cols=138 Identities=20% Similarity=0.150 Sum_probs=82.3
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|++|+++++ .++......+ ...++|+.|+++++........ ....+++|++|+|++|. ++... ...+
T Consensus 57 ~l~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~-~~~~ 127 (251)
T 3m19_A 57 GLTKLTWLNLDYN-QLQTLSAGVF--DDLTELGTLGLANNQLASLPLG----VFDHLTQLDKLYLGGNQ-LKSLP-SGVF 127 (251)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTT--TTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSC-CCCCC-TTTT
T ss_pred CcccCCEEECCCC-cCCccCHhHh--ccCCcCCEEECCCCcccccChh----HhcccCCCCEEEcCCCc-CCCcC-hhHh
Confidence 4677888888775 3433222111 1234888888888776654221 23467888888888876 33211 1123
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCcHH
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 469 (483)
..+++|+.|+++++. ++.... ..+..+++|+.|+++++. ++..... .+..+++|+.|++++|.++..
T Consensus 128 ~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 128 DRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHG-AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSCCBCTT
T ss_pred ccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCCc-CCccCHH-HHhCCCCCCEEEeeCCceeCC
Confidence 467788888888774 442111 123457888888888853 4432211 224678888888888877654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.76 E-value=7.3e-09 Score=102.95 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=81.5
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
+++|+.|+++++.+.... .+ ..+++|+.|+++++.-.....+..+++|+.|++.+|.+..+
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l---------------- 102 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GI-QYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL---------------- 102 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TG-GGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC----------------
T ss_pred CCCCCEEECcCCCCCCCh--HH-ccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC----------------
Confidence 477888888887554321 22 35778888888776522222267777888888877765221
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
+....+++|+.|++++|.+... .. +..+++|+.|+++++. +... .....+++|+.|+++++.......
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~-l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~---- 170 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNNK-ITDI----TVLSRLTKLDTLSLEDNQISDIVP---- 170 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCC--GG-GGGCTTCSEEECCSSC-CCCC----GGGGSCTTCSEEECCSSCCCCCGG----
T ss_pred hhhccCCCCCEEEecCCCCCCC--cc-ccCCCccCEEECCCCc-cCCc----hhhcccCCCCEEECcCCcCCCchh----
Confidence 1234566777777777776542 11 3457777777777654 3222 122334677777777654221111
Q ss_pred HhhCCCCCeEEeec
Q 037505 266 AENCDSLNSLLVYD 279 (483)
Q Consensus 266 ~~~~~~L~~L~l~~ 279 (483)
...+++|+.|++++
T Consensus 171 l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 171 LAGLTKLQNLYLSK 184 (605)
T ss_dssp GTTCTTCCEEECCS
T ss_pred hccCCCCCEEECcC
Confidence 33455555555543
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=2.5e-09 Score=86.12 Aligned_cols=105 Identities=27% Similarity=0.345 Sum_probs=54.1
Q ss_pred CCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcC
Q 037505 348 SGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSC 427 (483)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 427 (483)
++|+.|++++|..... .....+++|++|++++|. ++.. +......+++|++|++++|. +++.........+
T Consensus 42 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l 112 (149)
T 2je0_A 42 EELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL 112 (149)
T ss_dssp TTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGC
T ss_pred CCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhC
Confidence 3555555555544332 112345666666666665 3321 23333456667777776665 5443222233456
Q ss_pred CCCCEEeccCCCCCChHHH--HHHHHcCCCCcEEEee
Q 037505 428 KRLQTVDIMHCCRVGAEAV--ELFVLNSPQLRRVEVD 462 (483)
Q Consensus 428 ~~L~~L~l~~c~~i~~~~~--~~l~~~~~~L~~L~l~ 462 (483)
++|++|++++|. ++.... ......+++|+.|+++
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 677777777643 333221 1233467777777654
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.68 E-value=7.9e-09 Score=91.24 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCC
Q 037505 191 VLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSC 227 (483)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 227 (483)
+++|++|++++|.++.... ..+..+++|+.|+++++
T Consensus 106 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCC
Confidence 3455555555554432111 11133455555555544
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=4.8e-08 Score=86.66 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=92.7
Q ss_pred CCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 106 CSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
+++|++|+++++.++... .+ ..+++|++|+++++.-.....+..+++|++|++++|.+..++
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~--------------- 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN--------------- 101 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCT---------------
T ss_pred cCcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcC---------------
Confidence 478888888888555332 22 357888888888775222222778888999999888773322
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHH
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNL 265 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~ 265 (483)
.. .. ++|+.|++++|.++... . +..+++|+.|+++++. +.+.+ ....+++|+.|+++++..... ..
T Consensus 102 ~~-~~-~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~Ls~N~-i~~~~----~l~~l~~L~~L~L~~N~i~~~----~~ 167 (263)
T 1xeu_A 102 GI-PS-ACLSRLFLDNNELRDTD--S-LIHLKNLEILSIRNNK-LKSIV----MLGFLSKLEVLDLHGNEITNT----GG 167 (263)
T ss_dssp TC-CC-SSCCEEECCSSCCSBSG--G-GTTCTTCCEEECTTSC-CCBCG----GGGGCTTCCEEECTTSCCCBC----TT
T ss_pred cc-cc-CcccEEEccCCccCCCh--h-hcCcccccEEECCCCc-CCCCh----HHccCCCCCEEECCCCcCcch----HH
Confidence 11 11 78999999998876532 2 4568889999998865 44332 233458899999887653222 23
Q ss_pred HhhCCCCCeEEeecC
Q 037505 266 AENCDSLNSLLVYDG 280 (483)
Q Consensus 266 ~~~~~~L~~L~l~~~ 280 (483)
...+++|+.|+++++
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 345667777777543
No 112
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.67 E-value=6.1e-11 Score=104.11 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred CCCcEEeCCCCCCCcHHHHHHHHhhCCCCCeEEeecCC-ChhHHHHHHHhccccccEeeccCCCCCCHHHHHHHHHcCCC
Q 037505 244 QGLEEVKLRTCRSIVDVVLLNLAENCDSLNSLLVYDGC-SREGLLQFISHCRCNLQKLDLRLPLDLNNVHLSAVAVKFRG 322 (483)
Q Consensus 244 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 322 (483)
++|++|+++++. +... .......+++|+.|+++++. ...-....+..++ +|++|++++|+.+...... ....+++
T Consensus 31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~-~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPD-ALKELPL 106 (239)
T ss_dssp TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTT-SEECCTT
T ss_pred CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHH-HhCCCCC
Confidence 578999988764 2211 01123457788888887653 1111011122222 6677777653333321111 1123566
Q ss_pred CcEEEccCCCccChhhHHHHHHhcCCCCc---EEecccc-ccccCcchhHHHHHhcCCCCC-EEecCCCcCCCHHHHHHH
Q 037505 323 LSVLRLQSCCLVSGDGLKALGVAMSSGLE---ELALINC-DVVDREPGLLASLGQNLKQLR-KLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 323 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~~~~~~~~~l 397 (483)
|++|+++++. ++... .+ ...++|+ .|+++++ ........ ....+++|+ +|+++++. ++.-.. ..
T Consensus 107 L~~L~l~~n~-l~~lp--~~--~~l~~L~~L~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n~-l~~i~~-~~ 175 (239)
T 2xwt_C 107 LKFLGIFNTG-LKMFP--DL--TKVYSTDIFFILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNNG-FTSVQG-YA 175 (239)
T ss_dssp CCEEEEEEEC-CCSCC--CC--TTCCBCCSEEEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSCC-CCEECT-TT
T ss_pred CCEEeCCCCC-Ccccc--cc--ccccccccccEEECCCCcchhhcCcc----cccchhcceeEEEcCCCC-CcccCH-hh
Confidence 6777666542 22211 11 1223555 6666666 33322111 123456666 66666654 221111 11
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHhcC-CCCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeecc
Q 037505 398 LVSCNYLTELKLRGCKGLTSMAVVSMSKSC-KRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDEN 464 (483)
Q Consensus 398 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~ 464 (483)
+.. ++|+.|++++|..++.... .....+ ++|+.|+++++ .++.... ..+++|+.|++.++
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC
T ss_pred cCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCc
Confidence 112 5666666666643332111 112335 66666666663 3332111 14566666666554
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=1e-08 Score=85.10 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=8.2
Q ss_pred CCCCceEEccCCccc
Q 037505 106 CSNLKHLRFSAGPVS 120 (483)
Q Consensus 106 ~~~L~~L~l~~~~~~ 120 (483)
+++|++|++++|.++
T Consensus 18 ~~~L~~L~l~~n~l~ 32 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP 32 (176)
T ss_dssp TTSCEEEECTTSCCC
T ss_pred cCCceEEEeeCCCCc
Confidence 355666666665433
No 114
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.64 E-value=7.4e-09 Score=93.40 Aligned_cols=175 Identities=17% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
+++++|++++|.++......+. .+++|++|+++++.-........+++|++|++++|.+..++ .
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------~ 94 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP---------------L 94 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC---------------C
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCc---------------h
Confidence 5677777777755433222222 46677777777654221111256677777777777653221 1
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcHHHHHHHH
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVDVVLLNLA 266 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~ 266 (483)
....+++|+.|++++|.++..... .+..+++|+.|+++++. +...+ ......+++|+.|+++++.. .. ......
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~l-~~-l~~~~~ 168 (290)
T 1p9a_G 95 LGQTLPALTVLDVSFNRLTSLPLG-ALRGLGELQELYLKGNE-LKTLP--PGLLTPTPKLEKLSLANNNL-TE-LPAGLL 168 (290)
T ss_dssp CTTTCTTCCEEECCSSCCCCCCSS-TTTTCTTCCEEECTTSC-CCCCC--TTTTTTCTTCCEEECTTSCC-SC-CCTTTT
T ss_pred hhccCCCCCEEECCCCcCcccCHH-HHcCCCCCCEEECCCCC-CCccC--hhhcccccCCCEEECCCCcC-Cc-cCHHHh
Confidence 224556777777777766432111 12456777777777654 22111 11223346777777776532 11 011223
Q ss_pred hhCCCCCeEEeecCCChhHHHHHHHhccccccEeeccCC
Q 037505 267 ENCDSLNSLLVYDGCSREGLLQFISHCRCNLQKLDLRLP 305 (483)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 305 (483)
..+++|+.|+++++... .+...+.... +|+.|+++++
T Consensus 169 ~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~N 205 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGN 205 (290)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSC
T ss_pred cCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCC
Confidence 44677777777655421 1111111222 6888888763
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=9.9e-09 Score=84.43 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=75.3
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL 145 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 145 (483)
..+.+++|+++ ...+.+..+......+++|++|++++|.++.. .. ...+++|++|+++++.-.
T Consensus 22 ~~~~L~~L~l~--------------~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~ 84 (168)
T 2ell_A 22 TPAAVRELVLD--------------NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN-LPKLPKLKKLELSENRIF 84 (168)
T ss_dssp CTTSCSEEECC--------------SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS-CCCCSSCCEEEEESCCCC
T ss_pred CcccCCEEECC--------------CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh-hccCCCCCEEECcCCcCc
Confidence 34789999998 33333222222223468899999999866543 22 224667777777766522
Q ss_pred --HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHH--HHHHHhCCCccE
Q 037505 146 --YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGV--GWLWRSCKRLKK 221 (483)
Q Consensus 146 --~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~~~L~~ 221 (483)
....+..+++|++|++++|.+..++ .......+++|+.|++++|.++.... ...+..+++|+.
T Consensus 85 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 85 GGLDMLAEKLPNLTHLNLSGNKLKDIS-------------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCCHHHHHCTTCCEEECBSSSCCSSG-------------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred hHHHHHHhhCCCCCEEeccCCccCcch-------------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 3344455777777777777653221 11223445667777777666543221 123455666666
Q ss_pred EecCCCC
Q 037505 222 LQLKSCS 228 (483)
Q Consensus 222 L~l~~~~ 228 (483)
|+++++.
T Consensus 152 L~l~~n~ 158 (168)
T 2ell_A 152 LDGYDRE 158 (168)
T ss_dssp ETTEETT
T ss_pred ecCCCCC
Confidence 6665543
No 116
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.59 E-value=1.3e-06 Score=72.22 Aligned_cols=99 Identities=22% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCCcEEEccCCCccChhhHHHHHHh--cCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCC
Q 037505 312 HLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVA--MSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEML 389 (483)
Q Consensus 312 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 389 (483)
.+..+...-+.|+.|+++++..+.+.+...++.. ....|+.|++++|.+.+.+...+....+.-+.|++|+|++|. |
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 4555555566777777776546777776665522 223555555555555544443444444444556666665555 5
Q ss_pred CHHHHHHHHhcC---CCCCEEEecC
Q 037505 390 LDKEFMAMLVSC---NYLTELKLRG 411 (483)
Q Consensus 390 ~~~~~~~l~~~~---~~L~~L~l~~ 411 (483)
++.+...+++.+ +.|+.|++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCC
Confidence 555555554322 2455555543
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.56 E-value=1.6e-07 Score=92.33 Aligned_cols=32 Identities=9% Similarity=-0.077 Sum_probs=18.0
Q ss_pred CCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC
Q 037505 192 LGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 192 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
++|+.|++++|.++. +. ..+++|+.|+++++.
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNR 111 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC
Confidence 456666666666542 11 335666666666543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=6.1e-08 Score=86.01 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred hcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCch
Q 037505 64 LSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSR 143 (483)
Q Consensus 64 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 143 (483)
+..++.|+.|+++ ...+.+-. .+ ..+++|++|++++|.++.... ...+++|++|+++++.
T Consensus 37 ~~~l~~L~~L~l~--------------~n~i~~l~--~l-~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 37 QKELSGVQNFNGD--------------NSNIQSLA--GM-QFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTTCSEEECT--------------TSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred hhhcCcCcEEECc--------------CCCcccch--HH-hhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc
Confidence 3456889999997 22333221 12 347999999999996654332 3478999999999876
Q ss_pred hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEe
Q 037505 144 PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQ 223 (483)
Q Consensus 144 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 223 (483)
-.....+.. ++|+.|++.+|.+..+ +....+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 97 l~~l~~~~~-~~L~~L~L~~N~l~~~----------------~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~ 156 (263)
T 1xeu_A 97 LKNLNGIPS-ACLSRLFLDNNELRDT----------------DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLD 156 (263)
T ss_dssp CSCCTTCCC-SSCCEEECCSSCCSBS----------------GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEE
T ss_pred cCCcCcccc-CcccEEEccCCccCCC----------------hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEE
Confidence 332222334 8999999999977322 12457789999999999987642 246789999999
Q ss_pred cCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 224 LKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
++++. +.+. .....+++|+.|+++++.
T Consensus 157 L~~N~-i~~~----~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 157 LHGNE-ITNT----GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CTTSC-CCBC----TTSTTCCCCCEEEEEEEE
T ss_pred CCCCc-Ccch----HHhccCCCCCEEeCCCCc
Confidence 99875 4333 123445899999998754
No 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.49 E-value=5.2e-08 Score=83.94 Aligned_cols=130 Identities=13% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++|++|++++|.++......+ ..+++|++|+++++.- +....+.++++|++|++++|.+..++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-------------- 96 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-------------- 96 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC--------------
T ss_pred cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC--------------
Confidence 567777777775443222112 2466777777766542 23455667777777777777663332
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
......+++|+.|++++|.++...... +..+++|+.|+++++. +...+ ......+++|+.|++++++
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~--~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNK-LQTIA--KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCc-CCEEC--HHHHhCCCCCCEEEeCCCC
Confidence 111234567777777777664322111 2456677777776654 22111 0112233566666666543
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=1.1e-07 Score=82.38 Aligned_cols=128 Identities=12% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++|++|++++|.++......+ ..+++|++|+++++.-. ....+..+++|++|++++|.+..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-------------- 104 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-------------- 104 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC--------------
Confidence 677777777775543222112 24566777777665421 2233456677777777776653222
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
......+++|+.|++++|.++. +..-+..+++|+.|+++++. +..... .....+++|+.|++.++
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPH--GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECTTS
T ss_pred hhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCH--HHHhCCCCCCEEEeeCC
Confidence 1112345667777777766542 11112456666777666543 221110 11223355666666554
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.46 E-value=5e-08 Score=84.02 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=63.5
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
+.+++|++++|.++..........+++|++|+++++.- +....+..+++|++|++++|.+..+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 97 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-------------- 97 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC--------------
Confidence 45667777766444321111122456666666665541 12234556666777777666653222
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
......+++|++|++++|.++...... +..+++|+.|+++++.. .... +.....+++|+.|+++++.
T Consensus 98 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~--~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 98 HKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQI-TTVA--PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCC-CCBC--TTTTTTCTTCCEEECCSCC
T ss_pred HhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcC-CEEC--HHHhcCCCCCCEEEecCcC
Confidence 112234556666666666654321111 13456666666665432 1110 0112233566666665543
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=1.8e-08 Score=85.36 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=89.3
Q ss_pred HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHH
Q 037505 318 VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAM 397 (483)
Q Consensus 318 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 397 (483)
..+++|++|+++++. ++... .+. ..++|+.|++++|..... +.....+++|++|++++|. ++. +..
T Consensus 45 ~~l~~L~~L~ls~n~-l~~l~--~~~--~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N~-l~~--l~~- 110 (198)
T 1ds9_A 45 STLKACKHLALSTNN-IEKIS--SLS--GMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYNQ-IAS--LSG- 110 (198)
T ss_dssp HHTTTCSEEECSEEE-ESCCC--CHH--HHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEEE-CCC--HHH-
T ss_pred hcCCCCCEEECCCCC-Ccccc--ccc--cCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCCc-CCc--CCc-
Confidence 458899999998753 44322 222 234999999999887642 2233456889999999987 444 233
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChH---------HHHHHHHcCCCCcEEEeeccCCcH
Q 037505 398 LVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAE---------AVELFVLNSPQLRRVEVDENKLSD 468 (483)
Q Consensus 398 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~---------~~~~l~~~~~~L~~L~l~~~~i~~ 468 (483)
+..+++|+.|++++|. +++.........+++|++|++++|+ ++.. ........+++|+.|+ ++.+++
T Consensus 111 ~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 3367899999999876 6543322334568999999999864 3322 1123345799999887 777766
Q ss_pred H
Q 037505 469 V 469 (483)
Q Consensus 469 ~ 469 (483)
.
T Consensus 187 ~ 187 (198)
T 1ds9_A 187 D 187 (198)
T ss_dssp T
T ss_pred H
Confidence 4
No 123
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.42 E-value=5.3e-06 Score=68.54 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=94.1
Q ss_pred cCCCCcEEecccc-ccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHH
Q 037505 346 MSSGLEELALINC-DVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLV---SCNYLTELKLRGCKGLTSMAVV 421 (483)
Q Consensus 346 ~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~i~~~~~~ 421 (483)
..+.|++|+++++ .+.+.+...+......-..|++|+|++|. ++|.+...+++ .-+.|++|+|+++. |++.+..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 3459999999986 66655544455555566789999999998 89988766653 45799999999976 9999999
Q ss_pred HHHhcC---CCCCEEeccCCC--CCChHHHHHH---HHcCCCCcEEEeeccCCcHH
Q 037505 422 SMSKSC---KRLQTVDIMHCC--RVGAEAVELF---VLNSPQLRRVEVDENKLSDV 469 (483)
Q Consensus 422 ~l~~~~---~~L~~L~l~~c~--~i~~~~~~~l---~~~~~~L~~L~l~~~~i~~~ 469 (483)
.+++.+ +.|++|+++++. .+++.+...+ .+.-++|+.|+++.+.+...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence 888765 679999999753 5788765444 34578999999988876654
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.41 E-value=1.4e-07 Score=80.49 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCS 184 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (483)
++|++|+++++.++..... ....+++|++|+++++.- +....+..+++|++|++.+|.+..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------- 92 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-------------- 92 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred CCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC--------------
Confidence 5677777777644422211 112456666776666531 12233456677777777776653222
Q ss_pred hhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 185 NEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 185 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
......+++|++|++++|.++.... ..+..+++|+.|+++++. +...+ ......+++|++|+++++.
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~--~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQ-LKSVP--DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC--TTTTTTCTTCCEEECCSCC
T ss_pred HhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCc-cceeC--HHHhccCCCccEEEecCCC
Confidence 1112345677777777776542111 112456677777776653 22111 1112233667777766643
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.39 E-value=6.5e-08 Score=82.59 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=88.7
Q ss_pred CCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-
Q 037505 67 YPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL- 145 (483)
Q Consensus 67 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~- 145 (483)
.+.+++|+++ ...+.... ......+++|++|++++|.++..... ....+++|++|+++++.-.
T Consensus 27 ~~~l~~L~l~--------------~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 27 PAQTTYLDLE--------------TNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CTTCSEEECC--------------SSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcEEEcC--------------CCccCcCC-hhhhcccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCc
Confidence 4678999998 22222111 11123479999999999966533222 2236889999999987522
Q ss_pred -HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEec
Q 037505 146 -YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQL 224 (483)
Q Consensus 146 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 224 (483)
....+..+++|++|++.+|.+..++ ......+++|+.|++++|.++.... ..+..+++|+.|++
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLP--------------DGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWL 155 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEEC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccC--------------HhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEe
Confidence 3344678999999999999874332 1223567899999999998753222 22356899999999
Q ss_pred CCCCC
Q 037505 225 KSCSG 229 (483)
Q Consensus 225 ~~~~~ 229 (483)
+++..
T Consensus 156 ~~N~~ 160 (208)
T 2o6s_A 156 HDNPW 160 (208)
T ss_dssp CSCCB
T ss_pred cCCCe
Confidence 88753
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=1e-07 Score=87.71 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=66.5
Q ss_pred CCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCc-CCCHHHHHHHHh
Q 037505 321 RGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNE-MLLDKEFMAMLV 399 (483)
Q Consensus 321 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~l~~ 399 (483)
.++..+.+.+. +....+..+...+ ++|+.+++.++.......+ .+..|++|+++++.++- .+.+.+ +.
T Consensus 202 ~~~~~l~~~~~--l~~~~~~~l~~~~-~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~ni~~I~~~a----F~ 270 (329)
T 3sb4_A 202 RDINFLTIEGK--LDNADFKLIRDYM-PNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHNLKTIGQRV----FS 270 (329)
T ss_dssp GGCSEEEEEEC--CCHHHHHHHHHHC-TTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTTCCEECTTT----TT
T ss_pred cccceEEEeee--ecHHHHHHHHHhc-CCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcccceehHHH----hh
Confidence 34555555542 3444444443323 4777777776554443222 24467788888886642 122221 23
Q ss_pred cCCCCC-EEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHHHcCCCCcEEE
Q 037505 400 SCNYLT-ELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFVLNSPQLRRVE 460 (483)
Q Consensus 400 ~~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~ 460 (483)
.|++|+ .+.+.+ .++..+- ..+.+|++|++|++++ +.++..+-..+ ..|++|+.|+
T Consensus 271 ~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~-n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 271 NCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATG-DKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECS-SCCCEECTTTT-CTTCCCCEEE
T ss_pred CChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeCC-CccCccchhhh-cCCcchhhhc
Confidence 677888 888876 2332111 1234588888888865 33433222222 3788888775
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.39 E-value=1.2e-07 Score=81.73 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=80.2
Q ss_pred hcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCC
Q 037505 104 SSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETG 181 (483)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 181 (483)
..+++|++|++++|.++......+. .+++|++|+++++.- +....+..+++|++|++++|.+..+.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------- 121 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG----------- 121 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-----------
T ss_pred ccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-----------
Confidence 3479999999999966543322233 688999999998763 24456789999999999999874332
Q ss_pred CcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCC
Q 037505 182 LCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSG 229 (483)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 229 (483)
......+++|+.|++++|.++...... +..+++|+.|+++++..
T Consensus 122 ---~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 122 ---NDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ---TTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCCE
T ss_pred ---HhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcCC
Confidence 222346789999999999875432222 35689999999988654
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.36 E-value=5.8e-08 Score=84.22 Aligned_cols=108 Identities=20% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCC
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCK 428 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~ 428 (483)
+|+.|+++++....... ..+..+++|+.|+|++|. ++... ...+..+++|+.|+++++. ++. +..-+..++
T Consensus 65 ~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~ 135 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPV----GVFDSLTQLTVLDLGTNQ-LTVLP-SAVFDRLVHLKELFMCCNK-LTE--LPRGIERLT 135 (229)
T ss_dssp TCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCS--CCTTGGGCT
T ss_pred CCcEEECCCCCCCCcCh----hhcccCCCcCEEECCCCc-CCccC-hhHhCcchhhCeEeccCCc-ccc--cCcccccCC
Confidence 55555555555433211 112345555566655554 22110 1112245556666665543 331 111123455
Q ss_pred CCCEEeccCCCCCChHHHHHHHHcCCCCcEEEeeccCCc
Q 037505 429 RLQTVDIMHCCRVGAEAVELFVLNSPQLRRVEVDENKLS 467 (483)
Q Consensus 429 ~L~~L~l~~c~~i~~~~~~~l~~~~~~L~~L~l~~~~i~ 467 (483)
+|+.|+++++ .++.... ..+..+++|+.|++++|.++
T Consensus 136 ~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 136 HLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 6666666653 2332111 11234556666666665544
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.35 E-value=9.9e-08 Score=89.04 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=46.1
Q ss_pred CCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 108 NLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 108 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
.++.|+|++|.++......+...+++|++|+++++.- +....+..+++|++|++++|.+..++ .
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--------------~ 105 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--------------E 105 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------T
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--------------H
Confidence 3455555555333222111111344555555554431 12233445555666666555542221 1
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
.....+++|+.|++++|.+....... +..+++|+.|+++++.
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred HHhCCCcCCCEEECCCCcccEECHHH-hCCcccCCEEECCCCc
Confidence 11233455666666666553221111 1345566666665543
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=4.9e-08 Score=89.91 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=75.0
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
++..+.+.+ .+.......+...|++|+.+++.++. ++..+-..+. .+++|+++.+.++ ......+ .+.+|
T Consensus 203 ~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~~~----aF~~~ 272 (329)
T 3sb4_A 203 DINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA--QKKYLLKIKLPHN-LKTIGQR----VFSNC 272 (329)
T ss_dssp GCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT--TCTTCCEEECCTT-CCEECTT----TTTTC
T ss_pred ccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh--CCCCCCEEECCcc-cceehHH----HhhCC
Confidence 677777765 45566666666678899999998732 3332222222 2348999998875 3332222 24578
Q ss_pred CCCC-EEecCCCc-CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEec
Q 037505 376 KQLR-KLDLSYNE-MLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDI 435 (483)
Q Consensus 376 ~~L~-~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l 435 (483)
++|+ .+.+.+.- .+.+.+ +..|++|+.+++.++. ++...- ..+.+|++|+.+..
T Consensus 273 ~~L~~~l~l~~~l~~I~~~a----F~~c~~L~~l~l~~n~-i~~I~~-~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPASVTAIEFGA----FMGCDNLRYVLATGDK-ITTLGD-ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECTTCCEECTTT----TTTCTTEEEEEECSSC-CCEECT-TTTCTTCCCCEEEC
T ss_pred hhccEEEEEcccceEEchhh----hhCCccCCEEEeCCCc-cCccch-hhhcCCcchhhhcc
Confidence 8999 99997632 222222 3478899999996543 332221 12345888888753
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.33 E-value=4.7e-07 Score=74.89 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=43.8
Q ss_pred CCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh
Q 037505 66 NYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL 145 (483)
Q Consensus 66 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 145 (483)
..+.++.|+++ ...+.. +..+....++|++|++++|.++.. ..+ ..+++|++|+++++.-.
T Consensus 17 ~~~~L~~L~l~--------------~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 17 NAVRDRELDLR--------------GYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CTTSCEEEECT--------------TSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSSCCC
T ss_pred CcCCceEEEee--------------CCCCch--hHHhhhcCCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCCccc
Confidence 56789999997 223321 122334456999999999966542 111 23455555555554311
Q ss_pred --HHHHHhcCCCcceEecccccc
Q 037505 146 --YFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 146 --~~~~l~~~~~L~~L~l~~~~~ 166 (483)
....+..+++|++|++.+|.+
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCC
T ss_pred ccCcchhhcCCCCCEEECCCCcC
Confidence 112234455555555555544
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.33 E-value=1.7e-07 Score=80.71 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=88.8
Q ss_pred CCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--
Q 037505 68 PFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-- 145 (483)
Q Consensus 68 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-- 145 (483)
+.++.|+++ ...+....-. ....+++|++|++++|.++......+. .+++|++|+++++.-.
T Consensus 32 ~~l~~L~l~--------------~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 32 ETITEIRLE--------------QNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp TTCCEEECC--------------SSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCC
T ss_pred cCCCEEECC--------------CCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCcc
Confidence 678999998 2222211111 113368999999999966543333333 6889999999987622
Q ss_pred HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecC
Q 037505 146 YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLK 225 (483)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 225 (483)
....+..+++|++|++.+|.+..+. ......+++|+.|++++|.++..... .+..+++|+.|+++
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~--------------~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLR--------------VDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLA 160 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCC--------------TTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECC
T ss_pred CHhHccCCCCCCEEECCCCCCCEeC--------------HHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeC
Confidence 3344678999999999999874332 22335678999999999987543222 23568899999998
Q ss_pred CCCC
Q 037505 226 SCSG 229 (483)
Q Consensus 226 ~~~~ 229 (483)
++..
T Consensus 161 ~N~~ 164 (220)
T 2v9t_B 161 QNPF 164 (220)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 8653
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.23 E-value=3.9e-07 Score=84.96 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=62.1
Q ss_pred cCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEeccccccccccchhhhccCCCCC
Q 037505 105 SCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGL 182 (483)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 182 (483)
.+++|++|++++|.++......+. .+++|++|+++++.-. ....+..+++|++|++.+|.+..+.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------------ 128 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD------------ 128 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC------------
T ss_pred cccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC------------
Confidence 457778888877755433222222 5677788877776522 2344567777888888777663322
Q ss_pred cchhccccCCCceEEEccCCcCChhHHHHH--HHhCCCccEEecCCCC
Q 037505 183 CSNEEIDTVLGLESLCLSGIRSEDTGVGWL--WRSCKRLKKLQLKSCS 228 (483)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~--~~~~~~L~~L~l~~~~ 228 (483)
......+++|+.|++++|.++.-....+ ...+++|+.|+++++.
T Consensus 129 --~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 129 --RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp --TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred --HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 1122455677788887777643211111 1346677777776653
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.20 E-value=3.2e-08 Score=91.97 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=56.6
Q ss_pred CCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHHhc
Q 037505 321 RGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAMLVS 400 (483)
Q Consensus 321 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 400 (483)
..++.|+++++ .++......+ ...+|+++.+.++......+ ...+..+++|+.|++++|. ++.- . ...
T Consensus 154 ~~l~~L~L~~N-~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~---~~~f~~l~~L~~LdLs~N~-l~~l--p--~~~ 221 (350)
T 4ay9_X 154 FESVILWLNKN-GIQEIHNSAF---NGTQLDELNLSDNNNLEELP---NDVFHGASGPVILDISRTR-IHSL--P--SYG 221 (350)
T ss_dssp SSCEEEECCSS-CCCEECTTSS---TTEEEEEEECTTCTTCCCCC---TTTTTTEECCSEEECTTSC-CCCC--C--SSS
T ss_pred hhhhhhccccc-cccCCChhhc---cccchhHHhhccCCcccCCC---HHHhccCcccchhhcCCCC-cCcc--C--hhh
Confidence 35777787764 3433211111 12378888887654433311 1123567888888888886 3321 1 124
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 037505 401 CNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMH 437 (483)
Q Consensus 401 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~ 437 (483)
+.+|+.|.+.++..+..- .. ...+++|+.+++.+
T Consensus 222 ~~~L~~L~~l~~~~l~~l--P~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKL--PT-LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCEEECTTCTTCCCC--CC-TTTCCSCCEEECSC
T ss_pred hccchHhhhccCCCcCcC--CC-chhCcChhhCcCCC
Confidence 567888887766544321 11 23467788888765
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.19 E-value=2.7e-07 Score=85.75 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=37.2
Q ss_pred cccEeeccCCCCCCHHHHHHHHHcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcC
Q 037505 296 NLQKLDLRLPLDLNNVHLSAVAVKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNL 375 (483)
Q Consensus 296 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 375 (483)
+|++|.+.+++.+...... ....+++|+.|+++++ .++.... ..+.+|++|.+.++..... ++. ...+
T Consensus 178 ~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp~-----~~~~~L~~L~~l~~~~l~~----lP~-l~~l 245 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLPS-----YGLENLKKLRARSTYNLKK----LPT-LEKL 245 (350)
T ss_dssp EEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCCS-----SSCTTCCEEECTTCTTCCC----CCC-TTTC
T ss_pred chhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccCh-----hhhccchHhhhccCCCcCc----CCC-chhC
Confidence 4666666554433321111 1133567777777764 2332111 1223666666665544333 111 2346
Q ss_pred CCCCEEecCC
Q 037505 376 KQLRKLDLSY 385 (483)
Q Consensus 376 ~~L~~L~L~~ 385 (483)
++|+.+++.+
T Consensus 246 ~~L~~l~l~~ 255 (350)
T 4ay9_X 246 VALMEASLTY 255 (350)
T ss_dssp CSCCEEECSC
T ss_pred cChhhCcCCC
Confidence 6666666653
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.17 E-value=3.3e-07 Score=77.48 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=48.4
Q ss_pred CCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHH
Q 037505 131 CNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVG 210 (483)
Q Consensus 131 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~ 210 (483)
+++|++|+++++.-.....+..+++|++|++.+|.+..++ .....+++|+.|++++|.++. +.
T Consensus 47 l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~---------------~~~~~~~~L~~L~L~~N~l~~--l~ 109 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIE---------------NLDAVADTLEELWISYNQIAS--LS 109 (198)
T ss_dssp TTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCS---------------SHHHHHHHCSEEEEEEEECCC--HH
T ss_pred CCCCCEEECCCCCCccccccccCCCCCEEECCCCCccccc---------------chhhcCCcCCEEECcCCcCCc--CC
Confidence 4455555554433111113445556666666665542111 112233556666666666543 22
Q ss_pred HHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 211 WLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 211 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
. +..+++|+.|+++++. +...+.... ...+++|++|+++++
T Consensus 110 ~-~~~l~~L~~L~l~~N~-i~~~~~~~~-l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 110 G-IEKLVNLRVLYMSNNK-ITNWGEIDK-LAALDKLEDLLLAGN 150 (198)
T ss_dssp H-HHHHHHSSEEEESEEE-CCCHHHHHH-HTTTTTCSEEEECSC
T ss_pred c-cccCCCCCEEECCCCc-CCchhHHHH-HhcCCCCCEEEecCC
Confidence 2 2445666666666543 332221111 223366666666654
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=1.5e-06 Score=85.82 Aligned_cols=126 Identities=16% Similarity=0.106 Sum_probs=85.3
Q ss_pred CcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHH
Q 037505 132 NHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGW 211 (483)
Q Consensus 132 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 211 (483)
..|+.|+++++.-.....+..+++|+.|++++|.+..+ +.....+++|+.|++++|.++. +.
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l---------------p~~~~~l~~L~~L~Ls~N~l~~--lp- 502 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL---------------PPALAALRCLEVLQASDNALEN--VD- 502 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC---------------CGGGGGCTTCCEEECCSSCCCC--CG-
T ss_pred cCceEEEecCCCCCCCcCccccccCcEeecCccccccc---------------chhhhcCCCCCEEECCCCCCCC--Cc-
Confidence 36899999887532222378899999999999887322 2234577899999999998865 33
Q ss_pred HHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCCCCcH-HHHHHHHhhCCCCCeEEe
Q 037505 212 LWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCRSIVD-VVLLNLAENCDSLNSLLV 277 (483)
Q Consensus 212 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~l 277 (483)
-+..+++|+.|+++++. ++.... +.....+++|+.|+++++..... .....+...+|+|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~-l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNR-LQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSC-CCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCC-CCCCCC-cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 34678999999998865 332210 12234558999999998652211 123345566899998864
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.13 E-value=1.2e-06 Score=86.06 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
++|++|++++|.++... ..+++|++|+++++.-.....+.. +|++|++.+|.+.+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp---------------- 136 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLP---------------- 136 (571)
T ss_dssp TTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCC----------------
T ss_pred CCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCC----------------
Confidence 56777777777554221 245677777776654111101222 6777777776653222
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCC
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTC 254 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 254 (483)
..+++|+.|++++|.++. +.. .+++|+.|+++++. ++..+. +. ++|+.|+++++
T Consensus 137 --~~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-L~~lp~---l~---~~L~~L~Ls~N 190 (571)
T 3cvr_A 137 --ELPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQ-LTFLPE---LP---ESLEALDVSTN 190 (571)
T ss_dssp --CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCC---CC---TTCCEEECCSS
T ss_pred --CcCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCC-CCCcch---hh---CCCCEEECcCC
Confidence 034566666666666543 111 35566666666654 222111 11 56666666654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.08 E-value=1.4e-06 Score=73.19 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEecccccc
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
+++++|++++|.++..........+++|++|+++++.- +....+..+++|++|++++|.+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 36666666666443222111122455555555555431 1233445555666666655554
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=4e-06 Score=70.27 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=8.0
Q ss_pred CCCceEEccCCccc
Q 037505 107 SNLKHLRFSAGPVS 120 (483)
Q Consensus 107 ~~L~~L~l~~~~~~ 120 (483)
++|++|++++|.++
T Consensus 31 ~~l~~L~L~~n~i~ 44 (193)
T 2wfh_A 31 RDVTELYLDGNQFT 44 (193)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCc
Confidence 45666666666443
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=4.5e-06 Score=68.98 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.0
Q ss_pred CCCceEEccCCcc
Q 037505 107 SNLKHLRFSAGPV 119 (483)
Q Consensus 107 ~~L~~L~l~~~~~ 119 (483)
++|++|+++++.+
T Consensus 28 ~~l~~L~l~~n~l 40 (177)
T 2o6r_A 28 SSATRLELESNKL 40 (177)
T ss_dssp TTCSEEECCSSCC
T ss_pred CCCcEEEeCCCcc
Confidence 4556666655533
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.98 E-value=4e-06 Score=82.73 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcch
Q 037505 107 SNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSN 185 (483)
Q Consensus 107 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (483)
..|+.|++++|.++. ++. ...+++|+.|+++++.-. .+..++.+++|+.|++++|.+.++
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l---------------- 501 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV---------------- 501 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC----------------
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC----------------
Confidence 579999999996654 223 346889999999987632 445788999999999999977322
Q ss_pred hccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeC
Q 037505 186 EEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKL 251 (483)
Q Consensus 186 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 251 (483)
+....+++|+.|++++|.++.......+..+++|+.|+++++......+....+...+|+|+.|++
T Consensus 502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 134678899999999998865421223467999999999987533222222233444689998864
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.93 E-value=9.6e-07 Score=74.14 Aligned_cols=35 Identities=31% Similarity=0.258 Sum_probs=16.5
Q ss_pred CCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCc
Q 037505 349 GLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNE 387 (483)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 387 (483)
+|+.|+++++.+.....+ .+..+++|++|+|++|.
T Consensus 55 ~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCc
Confidence 555555555554433211 12244555555555554
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.84 E-value=4.5e-06 Score=69.96 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=60.4
Q ss_pred hcCCCCceEEccCCccchhHHHHHHHhCCcCcEEeccCchhh--HHHHHhcCCCcceEeccccccccccchhhhccCCCC
Q 037505 104 SSCSNLKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRPL--YFNWVASFSCLKELSVYACDADEVENEVFRRYGETG 181 (483)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 181 (483)
..+++|++|++++|.++......+. .+++|++|+++++.-. ....+..+++|++|++++|.+.+..
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------- 118 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM----------- 118 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-----------
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-----------
Confidence 3478999999999966643322333 6889999999987622 3344677889999999988773322
Q ss_pred CcchhccccCCCceEEEccCCcCC
Q 037505 182 LCSNEEIDTVLGLESLCLSGIRSE 205 (483)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~ 205 (483)
......+++|+.|++++|++.
T Consensus 119 ---~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 119 ---PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ---TTSSTTCTTCCEEECTTCCBC
T ss_pred ---HHHhhcCCCCCEEEeCCCCcc
Confidence 122345567888888887753
No 145
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.83 E-value=2.1e-06 Score=74.35 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=36.2
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhcccccc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRASKTSL 46 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~~~~~~ 46 (483)
+.||+||+.+||+||+.+ |++++++|||+|+.+......|.
T Consensus 6 ~~LP~ei~l~IlsfL~p~---DL~~l~~vcr~Wr~la~D~~LWr 46 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLSPH---DLCQLGSTNHYWNETVRDPILWR 46 (312)
T ss_dssp HHSCHHHHHHHHHTSCHH---HHHHHHTTCHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhccchHHH
Confidence 579999999999999999 99999999999999966554443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.81 E-value=1.5e-05 Score=65.79 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=69.5
Q ss_pred CceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchh
Q 037505 109 LKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNE 186 (483)
Q Consensus 109 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (483)
.+.++++++.++.... ...++|++|+++++.- +....+..+++|++|++.+|.+..++ ..
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------~~ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP--------------DG 70 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC--------------TT
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC--------------hh
Confidence 4566666664432211 1235788888877652 22334567788888888887663222 11
Q ss_pred ccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 187 EIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
....+++|+.|++++|.++.... .....+++|+.|+++++. +...+ ......+++|++|+++++.
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQ-LKSVP--DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred HccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCc-ceEeC--HHHhcCCcccCEEEecCCC
Confidence 12456678888888877643211 112456777777777654 32211 1122334667777776654
No 147
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.63 E-value=1.2e-05 Score=70.69 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHhcCCCCCCCCch-hhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSL-SVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~-~~~~vcr~W~~~~~~ 41 (483)
+.||+|++.+||.|||.+ +++ ++++|||+|+.+...
T Consensus 52 ~~LP~ell~~Il~~Lp~~---~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 52 AELPEPLLLRVLAELPAT---ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp TSSCHHHHHHHHHTSCHH---HHHHTGGGTCHHHHHHHTS
T ss_pred hhCCHHHHHHHHHcCCHH---HHHHHHHHHhHHHHHHhcC
Confidence 579999999999999999 999 999999999999654
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.54 E-value=2.9e-05 Score=79.20 Aligned_cols=105 Identities=16% Similarity=0.043 Sum_probs=55.6
Q ss_pred hCCcCcEEeccCchhh-HHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhH
Q 037505 130 ACNHLTSLTVSLSRPL-YFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTG 208 (483)
Q Consensus 130 ~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 208 (483)
.+++|+.|+++++.-. ....+..+++|++|++++|.+..+ ......+++|+.|+|++|.++.
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l---------------p~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL---------------PAEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC---------------CGGGGGGTTCCEEECTTSCCSS--
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc---------------ChhhhCCCCCCEEeCcCCcCCc--
Confidence 4566666666665422 223344666677777766655211 1223455667777777776542
Q ss_pred HHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCCCC
Q 037505 209 VGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRTCR 255 (483)
Q Consensus 209 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 255 (483)
+...+..+++|+.|+++++. ++..+ .....+++|+.|+|+++.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~-l~~lp---~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNM-VTTLP---WEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSC-CCCCC---SSTTSCTTCCCEECTTSC
T ss_pred cChhhcCCCCCCEEECCCCC-CCccC---hhhhcCCCccEEeCCCCc
Confidence 22222456667777776653 22211 112334667777776654
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.48 E-value=1.2e-05 Score=82.08 Aligned_cols=105 Identities=22% Similarity=0.087 Sum_probs=49.0
Q ss_pred cCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcCCCHHHHHHHH
Q 037505 319 KFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEMLLDKEFMAML 398 (483)
Q Consensus 319 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 398 (483)
.+++|+.|+++++. +..... .+. ..++|+.|+|++|.+... +.....+++|+.|+|++|. ++ .+..-+
T Consensus 222 ~l~~L~~L~Ls~n~-l~~l~~-~~~--~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~N~-l~--~lp~~~ 289 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFNISA-NIF--KYDFLTRLYLNGNSLTEL-----PAEIKNLSNLRVLDLSHNR-LT--SLPAEL 289 (727)
T ss_dssp CCCCCCEEECTTSC-CSCCCG-GGG--GCCSCSCCBCTTSCCSCC-----CGGGGGGTTCCEEECTTSC-CS--SCCSSG
T ss_pred cCCCCcEEECCCCC-CCCCCh-hhc--CCCCCCEEEeeCCcCccc-----ChhhhCCCCCCEEeCcCCc-CC--ccChhh
Confidence 35666666666643 221110 011 233666666666655421 1112345666666666665 33 111112
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCC
Q 037505 399 VSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHC 438 (483)
Q Consensus 399 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c 438 (483)
..+++|++|++++|. ++. +..-+..+++|+.|+|+++
T Consensus 290 ~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTS
T ss_pred cCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCC
Confidence 345566666666553 331 1111234556666666663
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.41 E-value=8e-05 Score=60.83 Aligned_cols=13 Identities=8% Similarity=0.143 Sum_probs=6.9
Q ss_pred CCCceEEccCCcc
Q 037505 107 SNLKHLRFSAGPV 119 (483)
Q Consensus 107 ~~L~~L~l~~~~~ 119 (483)
++|++|++++|.+
T Consensus 30 ~~l~~L~L~~N~i 42 (170)
T 3g39_A 30 TTTQVLYLYDNQI 42 (170)
T ss_dssp TTCSEEECCSSCC
T ss_pred CCCcEEEcCCCcC
Confidence 4555555555533
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.38 E-value=9e-05 Score=60.78 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=17.9
Q ss_pred cCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCCCC
Q 037505 190 TVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKSCS 228 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 228 (483)
.+++|+.|++++|.++.... ..+..+++|+.|+++++.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCC
Confidence 34555555555555432111 112345566666665543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.35 E-value=0.0001 Score=60.19 Aligned_cols=54 Identities=9% Similarity=-0.055 Sum_probs=27.5
Q ss_pred CceEEccCCccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEecccccc
Q 037505 109 LKHLRFSAGPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDA 166 (483)
Q Consensus 109 L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~ 166 (483)
.++++++++.++.... .-.++|++|+++++.- +....+..+++|++|++++|.+
T Consensus 11 ~~~l~~s~n~l~~ip~----~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 11 GTTVDCSGKSLASVPT----GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66 (170)
T ss_dssp TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCEEEeCCCCcCccCc----cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc
Confidence 4677777764432110 0124566666665541 1233445556666666666555
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.29 E-value=6.2e-05 Score=70.95 Aligned_cols=54 Identities=13% Similarity=0.269 Sum_probs=31.3
Q ss_pred cCCCCceEEccCC--ccchhHHHHHHHhCCcCcEEeccCc-hhhHHHHHhcCCCcceEecc
Q 037505 105 SCSNLKHLRFSAG--PVSVSSLLSLSEACNHLTSLTVSLS-RPLYFNWVASFSCLKELSVY 162 (483)
Q Consensus 105 ~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~L~l~ 162 (483)
.|.+|+++.+..+ .+....+ ..|.+|+.+++... ..+....+.+|++|+.+.+.
T Consensus 69 ~c~~L~~i~lp~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPSTVREIGEFAF----ENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCCCccCcchhHh----hCCCCCcEEEeCCCceEccchhhcccccchhhccc
Confidence 3677777777655 3333322 25777888777543 22233445667777766654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.001 Score=58.19 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=8.5
Q ss_pred cCCCceEEEccCCcCC
Q 037505 190 TVLGLESLCLSGIRSE 205 (483)
Q Consensus 190 ~~~~L~~L~l~~~~~~ 205 (483)
.+++|+.|+|++|.++
T Consensus 194 ~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 194 KAPNLKILNLSGNELK 209 (267)
T ss_dssp HSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCccC
Confidence 4455555555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=0.00051 Score=60.01 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=38.8
Q ss_pred hcCCCCCEEecCCCcCCCH-HHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHhcCCCCCEEeccCCCCCCh------H
Q 037505 373 QNLKQLRKLDLSYNEMLLD-KEFMAMLVSCNYLTELKLRGCKGLTSM-AVVSMSKSCKRLQTVDIMHCCRVGA------E 444 (483)
Q Consensus 373 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~L~~L~l~~c~~i~~------~ 444 (483)
.++|+|++|+|++|. ++. .++..++..+++|+.|+|+++. +++. .+..+ ..+ +|++|++++++ ++. .
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l-~~l-~L~~L~L~~Np-l~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGL-KLEELWLDGNS-LCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGG-TTS-CCSEEECTTST-TGGGCSSHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhc-ccC-CcceEEccCCc-CccccCcchh
Confidence 455666666666655 222 1222333455666666666554 3322 11111 112 66666666643 332 1
Q ss_pred HHHHHHHcCCCCcEEE
Q 037505 445 AVELFVLNSPQLRRVE 460 (483)
Q Consensus 445 ~~~~l~~~~~~L~~L~ 460 (483)
-...+...+|+|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 1223445666766654
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.07 E-value=0.00034 Score=57.30 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=6.6
Q ss_pred hCCCccEEecCCC
Q 037505 215 SCKRLKKLQLKSC 227 (483)
Q Consensus 215 ~~~~L~~L~l~~~ 227 (483)
.+++|+.|+++++
T Consensus 79 ~l~~L~~L~L~~N 91 (174)
T 2r9u_A 79 KLTQLTQLDLNDN 91 (174)
T ss_dssp TCTTCCEEECCSS
T ss_pred CcchhhEEECCCC
Confidence 3455555555543
No 157
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.06 E-value=0.00012 Score=70.68 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
+.||+|++.+||+||+.+ +++++++|||+|+++...
T Consensus 16 ~~lp~~~~~~i~~~l~~~---~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQFE---DIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHSCHHHHHHHHTTSCHH---HHHHHHTTCHHHHHHHTT
T ss_pred HHCCHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHHcC
Confidence 469999999999999999 999999999999998654
No 158
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.78 E-value=0.00018 Score=68.69 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.9
Q ss_pred ccchHH----HHHHHHhcCCCCCCCCchhhhhhhHHHHHHHhc
Q 037505 3 NMLCDE----LLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYRA 41 (483)
Q Consensus 3 ~~LP~e----il~~If~~L~~~~~~d~~~~~~vcr~W~~~~~~ 41 (483)
+.||+| ++.+||+||+.+ +++++++|||+|+++...
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~~~---~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLDAK---SLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCCHH---HHHHHHHHCHHHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcC
Confidence 468999 999999999999 999999999999988544
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.78 E-value=0.0012 Score=62.04 Aligned_cols=88 Identities=10% Similarity=0.094 Sum_probs=47.2
Q ss_pred HhcCCCCCEEecCCCc-CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHH
Q 037505 372 GQNLKQLRKLDLSYNE-MLLDKEFMAMLVSCNYLTELKLRGCKGLTSMAVVSMSKSCKRLQTVDIMHCCRVGAEAVELFV 450 (483)
Q Consensus 372 ~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 450 (483)
+..|++|+.+.|...- .+.+.+ +..|++|+.+.+.+. ++..+-. .+..| +|+++++.+.. +....- ..+
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~lp~~--l~~I~~~-aF~~~-~L~~l~l~~n~-~~~l~~-~~F 365 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGL----LGGNRKVTQLTIPAN--VTQINFS-AFNNT-GIKEVKVEGTT-PPQVFE-KVW 365 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTT----TTTCCSCCEEEECTT--CCEECTT-SSSSS-CCCEEEECCSS-CCBCCC-SSC
T ss_pred hhCCccCCeEEeCCceEEEhhhh----hcCCCCccEEEECcc--ccEEcHH-hCCCC-CCCEEEEcCCC-Cccccc-ccc
Confidence 3467788888876421 122222 236778888888653 3221111 13456 88888887742 211110 111
Q ss_pred HcCC-CCcEEEeeccCCcHH
Q 037505 451 LNSP-QLRRVEVDENKLSDV 469 (483)
Q Consensus 451 ~~~~-~L~~L~l~~~~i~~~ 469 (483)
..++ +++.|.+..+.+..+
T Consensus 366 ~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 366 YGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp CCSCTTCCEEEECGGGHHHH
T ss_pred cCCCCCccEEEeCHHHHHHh
Confidence 2453 678888877665444
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.77 E-value=0.00023 Score=66.89 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=42.1
Q ss_pred HcCCCCcEEEccCCCccChhhHHHHHHhcCCCCcEEeccccccccCcchhHHHHHhcCCCCCEEecCCCcC--CCHHHHH
Q 037505 318 VKFRGLSVLRLQSCCLVSGDGLKALGVAMSSGLEELALINCDVVDREPGLLASLGQNLKQLRKLDLSYNEM--LLDKEFM 395 (483)
Q Consensus 318 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~~~~~~ 395 (483)
..|++|+.+.+.. .++..+-..+. .+.+|+.+.+..+ ......+ .+.+| +|+.+.+.++.. +...
T Consensus 297 ~~c~~L~~l~l~~--~i~~I~~~aF~--~c~~L~~l~lp~~-l~~I~~~----aF~~~-~L~~l~l~~n~~~~l~~~--- 363 (401)
T 4fdw_A 297 EGCPKLARFEIPE--SIRILGQGLLG--GNRKVTQLTIPAN-VTQINFS----AFNNT-GIKEVKVEGTTPPQVFEK--- 363 (401)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTT--TCCSCCEEEECTT-CCEECTT----SSSSS-CCCEEEECCSSCCBCCCS---
T ss_pred hCCccCCeEEeCC--ceEEEhhhhhc--CCCCccEEEECcc-ccEEcHH----hCCCC-CCCEEEEcCCCCcccccc---
Confidence 3477888888764 23332222222 2347888888554 2221111 13467 888888877642 1111
Q ss_pred HHHhcCC-CCCEEEecC
Q 037505 396 AMLVSCN-YLTELKLRG 411 (483)
Q Consensus 396 ~l~~~~~-~L~~L~l~~ 411 (483)
.+..++ +++.|.+..
T Consensus 364 -~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 364 -VWYGFPDDITVIRVPA 379 (401)
T ss_dssp -SCCCSCTTCCEEEECG
T ss_pred -cccCCCCCccEEEeCH
Confidence 122443 677888765
No 161
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.61 E-value=0.00043 Score=66.26 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=33.0
Q ss_pred cccchHHHHHHHHhcCCCCCCCCchhhhhhhHHHHHHHh
Q 037505 2 ENMLCDELLQEIFTKLPTTPSSSSLSVCLVSKRWLNLYR 40 (483)
Q Consensus 2 ~~~LP~eil~~If~~L~~~~~~d~~~~~~vcr~W~~~~~ 40 (483)
-+.||+|++.+||+||+.+ |++++++|||+|+.+..
T Consensus 19 ~~~lp~e~~~~i~~~l~~~---~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLEPK---DLLQAAQTCRYWRILAE 54 (445)
T ss_dssp TTSSCHHHHHHHHTTSCHH---HHHHHTTSCHHHHHHHT
T ss_pred hHHCCHHHHHHHHHhCCHH---HHHHHHHHhHHHHhhcC
Confidence 3579999999999999999 99999999999999854
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.44 E-value=0.00055 Score=64.39 Aligned_cols=147 Identities=13% Similarity=0.168 Sum_probs=72.5
Q ss_pred hhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCC--ccchhHHHHHHHhCCcCcEEecc
Q 037505 63 LLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAG--PVSVSSLLSLSEACNHLTSLTVS 140 (483)
Q Consensus 63 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~ 140 (483)
.+..+..|+.+.+. .....+.+.++ ..|++|+.+++..+ .+....+ ..|++|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp------------~~i~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~aF----~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIP------------STVREIGEFAF----ENCSKLEIINIPDSVKMIGRCTF----SGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECC------------TTCCEECTTTT----TTCTTCCEECCCTTCCEECTTTT----TTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeC------------CCccCcchhHh----hCCCCCcEEEeCCCceEccchhh----cccccchhhccc
Confidence 35567889999885 12333333322 34789999999876 3443332 268888887765
Q ss_pred Cch-hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcC--ChhHHHHHHHhCC
Q 037505 141 LSR-PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRS--EDTGVGWLWRSCK 217 (483)
Q Consensus 141 ~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~l~~~~~~~~ 217 (483)
..- .+...++.++..++......... + .......+.+|+.+.+..+.. .... ...|+
T Consensus 126 ~~l~~i~~~aF~~~~~~~~~~~~~~~~--i--------------~~~aF~~c~~L~~i~l~~~~~~I~~~~----F~~c~ 185 (394)
T 4fs7_A 126 LMLKSIGVEAFKGCDFKEITIPEGVTV--I--------------GDEAFATCESLEYVSLPDSMETLHNGL----FSGCG 185 (394)
T ss_dssp TTCCEECTTTTTTCCCSEEECCTTCCE--E--------------CTTTTTTCTTCCEEECCTTCCEECTTT----TTTCT
T ss_pred CceeeecceeeecccccccccCccccc--c--------------chhhhcccCCCcEEecCCccceecccc----ccCCC
Confidence 421 11222233333222221111100 0 011124566778877765432 2221 24677
Q ss_pred CccEEecCCCCCCCchhHHHHHhhccCCCcEEeCCC
Q 037505 218 RLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLRT 253 (483)
Q Consensus 218 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (483)
+|+.+.+... +...+ ......++.|+.+.+..
T Consensus 186 ~L~~i~l~~~--~~~I~--~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 186 KLKSIKLPRN--LKIIR--DYCFAECILLENMEFPN 217 (394)
T ss_dssp TCCBCCCCTT--CCEEC--TTTTTTCTTCCBCCCCT
T ss_pred CceEEEcCCC--ceEeC--chhhccccccceeecCC
Confidence 8888777542 21111 11222236677666654
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.35 E-value=0.0019 Score=59.53 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=48.4
Q ss_pred CCCCceEEccC-CccchhHHHHHHHhCCcCcEEeccCchh--hHHHHHhcCCCcceEeccccccccccchhhhccCCCCC
Q 037505 106 CSNLKHLRFSA-GPVSVSSLLSLSEACNHLTSLTVSLSRP--LYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGL 182 (483)
Q Consensus 106 ~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 182 (483)
+++|++|+|++ |.++......+ ..+++|+.|+++++.- +....+..+++|+.|+|++|.+..++..
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------- 98 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK---------- 98 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST----------
T ss_pred CCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH----------
Confidence 45678888875 64443222212 2466777777777642 2334566778888888887776433311
Q ss_pred cchhccccCCCceEEEccCCcCC
Q 037505 183 CSNEEIDTVLGLESLCLSGIRSE 205 (483)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~ 205 (483)
....+ .|+.|++.+|.+.
T Consensus 99 ----~~~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 ----TVQGL-SLQELVLSGNPLH 116 (347)
T ss_dssp ----TTCSC-CCCEEECCSSCCC
T ss_pred ----HcccC-CceEEEeeCCCcc
Confidence 11112 2778888777653
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.56 E-value=0.008 Score=55.24 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=33.3
Q ss_pred hCCcCcEEeccC-ch--hhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCC
Q 037505 130 ACNHLTSLTVSL-SR--PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSE 205 (483)
Q Consensus 130 ~~~~L~~L~l~~-~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 205 (483)
.+++|++|++++ +. .+....+..+++|+.|++++|.+.++. ......+++|+.|+|++|.++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------------~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------------PDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--------------TTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--------------HHHhcCCcCCCEEeCCCCccc
Confidence 455677777764 33 123345566666677776666553222 111234556666666666553
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.31 E-value=0.39 Score=44.72 Aligned_cols=119 Identities=13% Similarity=0.306 Sum_probs=66.3
Q ss_pred cCCCCceEEccCC--ccchhHHHHHHHhCCcCcEEeccCch-hhHHHHHhcCCCcceEeccccccccccchhhhccCCCC
Q 037505 105 SCSNLKHLRFSAG--PVSVSSLLSLSEACNHLTSLTVSLSR-PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETG 181 (483)
Q Consensus 105 ~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 181 (483)
.|.+|+.+.+... .+....+ ..|++|+.+.+...- .+....+.+|++|+.+.+..+ ...++
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~----------- 326 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQIL----------- 326 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-----------
T ss_pred ecccccEEecccccceecCccc----ccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEeh-----------
Confidence 4678888888765 3333222 257888888885432 234455678888888888543 21111
Q ss_pred CcchhccccCCCceEEEccCC--cCChhHHHHHHHhCCCccEEecCCCCCCCchhHHHHHhhccCCCcEEeCC
Q 037505 182 LCSNEEIDTVLGLESLCLSGI--RSEDTGVGWLWRSCKRLKKLQLKSCSGIGDGGSFANFVKCSQGLEEVKLR 252 (483)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 252 (483)
......+.+|+++.+..+ .+....+ ..|++|+.+++.+.. .....+.. +..|+.+.+.
T Consensus 327 ---~~aF~~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~~-----~~~~~~~~-~~~L~~i~i~ 386 (394)
T 4gt6_A 327 ---DDAFAGCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGSR-----SQWNAIST-DSGLQNLPVA 386 (394)
T ss_dssp ---TTTTTTCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSCH-----HHHHTCBC-CCCC------
T ss_pred ---HhHhhCCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCce-----eehhhhhc-cCCCCEEEeC
Confidence 112346678888888654 2333332 578999999886532 11222223 3678887765
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.78 E-value=0.91 Score=42.20 Aligned_cols=124 Identities=16% Similarity=0.268 Sum_probs=73.6
Q ss_pred hhcCCCCeeEeeeeecccccccccccCCCCcccchhHHHHHhcCCCCceEEccCC--ccchhHHHHHHHhCCcCcEEecc
Q 037505 63 LLSNYPFVSSLSVALSSSESTATTSSRSNPSFFDRLLFVVSSSCSNLKHLRFSAG--PVSVSSLLSLSEACNHLTSLTVS 140 (483)
Q Consensus 63 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~ 140 (483)
.+..+..|+.+.+. .....+.+..+ ..|++|+.+.+... .+....+ ..|.+|+.+.+.
T Consensus 260 aF~~c~~L~~i~lp------------~~~~~I~~~aF----~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp 319 (394)
T 4gt6_A 260 AFDSCAYLASVKMP------------DSVVSIGTGAF----MNCPALQDIEFSSRITELPESVF----AGCISLKSIDIP 319 (394)
T ss_dssp TTTTCSSCCEEECC------------TTCCEECTTTT----TTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECC
T ss_pred eeeecccccEEecc------------cccceecCccc----ccccccccccCCCcccccCceee----cCCCCcCEEEeC
Confidence 34566778888875 12222222222 34789999999765 4444333 368999999996
Q ss_pred Cc-hhhHHHHHhcCCCcceEeccccccccccchhhhccCCCCCcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCc
Q 037505 141 LS-RPLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETGLCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRL 219 (483)
Q Consensus 141 ~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L 219 (483)
.. ..+...++.+|.+|+.+.+..+ ...++ ......+.+|+++.+.++... ... ...+.+|
T Consensus 320 ~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~--------------~~aF~~C~~L~~i~~~~~~~~---~~~-~~~~~~L 380 (394)
T 4gt6_A 320 EGITQILDDAFAGCEQLERIAIPSS-VTKIP--------------ESAFSNCTALNNIEYSGSRSQ---WNA-ISTDSGL 380 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEEECTT-CCBCC--------------GGGGTTCTTCCEEEESSCHHH---HHT-CBCCCCC
T ss_pred CcccEehHhHhhCCCCCCEEEECcc-cCEEh--------------HhHhhCCCCCCEEEECCceee---hhh-hhccCCC
Confidence 53 3345567789999999999543 22222 122357789999999887532 111 2457788
Q ss_pred cEEecC
Q 037505 220 KKLQLK 225 (483)
Q Consensus 220 ~~L~l~ 225 (483)
+.+.+.
T Consensus 381 ~~i~i~ 386 (394)
T 4gt6_A 381 QNLPVA 386 (394)
T ss_dssp ------
T ss_pred CEEEeC
Confidence 888764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.44 E-value=1.6 Score=40.13 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=17.8
Q ss_pred hCCcCcEEeccCch-hhHHHHHhcCCCcceEeccc
Q 037505 130 ACNHLTSLTVSLSR-PLYFNWVASFSCLKELSVYA 163 (483)
Q Consensus 130 ~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~ 163 (483)
.+.+|+.+.+.... .+.......|.+|+.+.+..
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECT
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCC
Confidence 35566666664322 12233445666677666644
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=73.80 E-value=1.9 Score=39.65 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=73.3
Q ss_pred cCCCCceEEccCC--ccchhHHHHHHHhCCcCcEEeccCch-hhHHHHHhcCCCcceEeccccccccccchhhhccCCCC
Q 037505 105 SCSNLKHLRFSAG--PVSVSSLLSLSEACNHLTSLTVSLSR-PLYFNWVASFSCLKELSVYACDADEVENEVFRRYGETG 181 (483)
Q Consensus 105 ~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 181 (483)
.+.+|+.+.+..+ .+....+ ..|..|+.+.+...- .+......+|.+|+.+.+... ...++
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~----------- 278 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVP----------- 278 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEEC-----------
T ss_pred cccccceeeeccceeEEccccc----cCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecc-----------
Confidence 3678888888765 3333222 268889998886532 234455667888998888543 11111
Q ss_pred CcchhccccCCCceEEEccCCcCChhHHHHHHHhCCCccEEecCC-CCCCCchhHHHHHhhccCCCcEEeCCC
Q 037505 182 LCSNEEIDTVLGLESLCLSGIRSEDTGVGWLWRSCKRLKKLQLKS-CSGIGDGGSFANFVKCSQGLEEVKLRT 253 (483)
Q Consensus 182 ~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~ 253 (483)
......+.+|+++.+.++.+..-+-.. ...|.+|+.+.+.. ...+... ....+++|+++.+..
T Consensus 279 ---~~aF~~c~~L~~i~l~~~~i~~I~~~a-F~~c~~L~~i~lp~~l~~I~~~-----aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 279 ---YLLCSGCSNLTKVVMDNSAIETLEPRV-FMDCVKLSSVTLPTALKTIQVY-----AFKNCKALSTISYPK 342 (379)
T ss_dssp ---TTTTTTCTTCCEEEECCTTCCEECTTT-TTTCTTCCEEECCTTCCEECTT-----TTTTCTTCCCCCCCT
T ss_pred ---ccccccccccccccccccccceehhhh-hcCCCCCCEEEcCccccEEHHH-----HhhCCCCCCEEEECC
Confidence 112356788999998776543211111 25688999999854 2222222 223337899888853
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=65.61 E-value=6.8 Score=29.49 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=5.5
Q ss_pred CCceEEEccCCc
Q 037505 192 LGLESLCLSGIR 203 (483)
Q Consensus 192 ~~L~~L~l~~~~ 203 (483)
++|+.|+|.+|+
T Consensus 55 ~~L~~L~L~~NP 66 (130)
T 3rfe_A 55 PALRTAHLGANP 66 (130)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 344444444443
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.70 E-value=10 Score=28.47 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=6.5
Q ss_pred cCCCCCEEecCCCc
Q 037505 374 NLKQLRKLDLSYNE 387 (483)
Q Consensus 374 ~~~~L~~L~L~~~~ 387 (483)
.+++|+.|+|.+|+
T Consensus 53 ~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 53 ALPALRTAHLGANP 66 (130)
T ss_dssp GCTTCCEEECCSSC
T ss_pred hccccCEEEecCCC
Confidence 34445555554443
Done!