BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037506
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 80.5 bits (197), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 55/73 (75%), Gaps = 5/73 (6%)
Query: 9 KKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIENLC 68
K +I+GGTGY+GK+MV+AS+S H TF+YARP+T +S PS +++ +EF+ +GVTIIE
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIE--- 62
Query: 69 DVGQVTSSQRMRS 81
G++ ++M S
Sbjct: 63 --GEMEEHEKMVS 73
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIG 60
ME K K LIFGGTGY+G +MVK S+ GH T+V+ RP NS SK + EFQ +G
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLG 59
Query: 61 VTIIENLCD 69
I++ D
Sbjct: 60 AIIVKGELD 68
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIG 60
ME K K LIFGGTGY+G +MVK S+ GH T+V+ RP NS SK + EFQ +G
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLG 59
Query: 61 VTIIENLCD 69
I++ D
Sbjct: 60 AIIVKGELD 68
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIG 60
ME K K LIFGGTGY+G +MVK S+ GH T+V+ RP NS SK + EFQ +G
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLG 59
Query: 61 VTIIENLCD 69
I++ D
Sbjct: 60 AIIVKGELD 68
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIG 60
ME K K LIFGGTGY+G +MVK S+ GH T+V+ RP NS SK + EFQ +G
Sbjct: 1 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP---NS--SKTTLLDEFQSLG 55
Query: 61 VTIIENLCD 69
I++ D
Sbjct: 56 AIIVKGELD 64
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 5 NTKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTII 64
+ K + LI GGTGY+GK +V AS+S GH T+V RP S K+++ F+ +G +I
Sbjct: 2 DKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV-SNIDKVQMLLYFKQLGAKLI 60
Query: 65 ENLCD--------VGQVTSSQRMRSGRSLGHHLI 90
E D + QV +G L HH++
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHIL 94
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 6 TKPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
++ + L+ G TGY+G+++ KAS+ GH TF+ R T +S K ++ + F+ G I+
Sbjct: 3 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 62
Query: 66 NLCD 69
D
Sbjct: 63 GSID 66
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin
Reductase From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 7 KPKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIEN 66
K + LI G TG++G+++ AS+ + T++ ARP ++ PSK +I K + G I+
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS--PSKAKIFKALEDKGAIIVYG 67
Query: 67 LCD 69
L +
Sbjct: 68 LIN 70
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 8 PKKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIENL 67
P KLIF L + K SV F T R KL+ HKE+ + I+ N
Sbjct: 95 PGKLIFAPDLVLDRDEGK-SVEGILEIFDMLLATTSRFRELKLQ-HKEYLCVKAMILLNS 152
Query: 68 CDVGQVTSSQRMRSGRSLGHHL 89
VT++Q S R L H L
Sbjct: 153 SMYPLVTATQDADSSRKLAHLL 174
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 7 KPKKLIFGGTGYLGKYMVKASVSSGH--NTFVYARP 40
K + + GGTG+LG +++K+ + +G+ NT + A P
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADP 36
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFV 36
M+ K + LI GG G++G ++ +A V+SG V
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALVASGEEVTV 36
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 9 KKLIFGGTGYLGKYMVKASVSSGHNTFVYARPV 41
K + GGTG+LG+Y+V++ + G+ + R +
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI 36
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYAR 39
L+ G TG+LG Y+++A H + + R
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHRIYCFIR 101
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 9 KKLIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLE 51
K + G TG LG + +A ++GH+ + RP +Q R + LE
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLE 57
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYAR 39
L+ G TG+LG Y+++A H + + R
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHRIYCFIR 182
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEI 52
LI+G +G LG Y + +++ G N P+ S P K EI
Sbjct: 233 LIWGASGGLGSYATQFALAGGAN------PICVVSSPQKAEI 268
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEI 52
LI+G +G LG Y + +++ G N P+ S P K EI
Sbjct: 251 LIWGASGGLGSYATQFALAGGAN------PICVVSSPQKAEI 286
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia
Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia
Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 10 KLIFGGTGYLGKYMVKASVSSGHNTF-VYARPVTQNSR-----PSKLEIHKEFQGIGV 61
++IF GT + A +SSGHN V+ +P R PS +++ E +G+ V
Sbjct: 5 RIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPV 62
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEI-HKEFQGIGVTIIENL-C 68
LI GG G++G ++ + GH V T R + I H+ F+ I ++E L
Sbjct: 9 LITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI 68
Query: 69 DVGQV 73
+V Q+
Sbjct: 69 EVDQI 73
>pdb|4GP6|A Chain A, Polynucleotide Kinase
pdb|4GP6|B Chain B, Polynucleotide Kinase
Length = 171
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 22 YMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIENL 67
Y+V + G T V A V +++R +EI K++ V ++ NL
Sbjct: 64 YIVSKRLQLGKLTVVDATNVQESARKPLIEIAKDYHCFPVAVVFNL 109
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEIHKEFQGIGVTIIE 65
L+ GG+GY+G + + +GH+ + NS+ S L + + G T +E
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVIILDNLC--NSKRSVLPVIERLGGKHPTFVE 56
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 2 EGKNTKPKK--LIFGGTGYLGKYMVKASVSSGHNTFVYARPVTQNSRPSKLEI-HKEFQG 58
+G K +K LI GG G++G ++ GH V T R + I H+ F+
Sbjct: 20 QGHXEKDRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENFEL 79
Query: 59 IGVTIIENL 67
I ++E L
Sbjct: 80 INHDVVEPL 88
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl)
From B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFV-YARPVTQNSRPSKLEIHKEFQGIGVTIIENLCD 69
L+ G + +GK +G+N + YAR S+ + LE +E + +GV ++ +
Sbjct: 8 LVTGSSRGVGKAAAIRLAENGYNIVINYAR-----SKKAALETAEEIEKLGVKVLVVKAN 62
Query: 70 VGQVTSSQRM 79
VGQ + M
Sbjct: 63 VGQPAKIKEM 72
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 11 LIFGGTGYLGKYMVKASVSSGHNTFV 36
LI GG GY+G + VK V G + V
Sbjct: 5 LICGGAGYIGSHAVKKLVDEGLSVVV 30
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1 MEGKNTKPKKLIFGGTGYLGKYMVKASVSSGHNTFV 36
++ ++T L+ GG GY+G + V + +G++ V
Sbjct: 5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,831,721
Number of Sequences: 62578
Number of extensions: 95281
Number of successful extensions: 288
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 38
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)