Your job contains 1 sequence.
>037508
MLNSPGNRHLRDETTRFGSPSRGLPAAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFS
HLNVNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGNELS
SVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEI
EMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGI
RAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVA
DNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRV
PQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHP
FGNYVIQSALLVSKVRLFSSPPISVCKPG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037508
(449 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 662 1.2e-67 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 652 6.0e-64 1
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 636 3.0e-62 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 620 1.5e-60 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 600 1.9e-58 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 544 1.7e-52 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 536 1.9e-52 2
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 539 5.6e-52 1
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 538 7.2e-52 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 507 1.4e-48 1
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 490 3.0e-48 2
TAIR|locus:2167771 - symbol:PUM13 "pumilio 13" species:37... 473 5.6e-45 1
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 480 7.2e-45 1
TAIR|locus:2167786 - symbol:PUM14 "pumilio 14" species:37... 432 2.5e-43 2
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 454 2.9e-42 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 442 1.1e-40 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 378 2.3e-36 2
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 364 1.7e-35 3
WB|WBGene00004245 - symbol:puf-9 species:6239 "Caenorhabd... 368 4.8e-35 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 362 1.4e-34 2
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 363 1.5e-34 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 365 2.9e-34 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 362 4.9e-34 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 362 9.7e-34 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 362 9.7e-34 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 361 2.6e-33 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 358 3.3e-33 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 358 3.3e-33 2
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 355 1.2e-32 2
SGD|S000003936 - symbol:PUF3 "Protein of the mitochondria... 363 2.9e-32 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 345 3.7e-32 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 344 5.2e-32 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 344 6.1e-32 2
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 363 7.9e-32 1
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 345 8.6e-32 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 345 9.2e-32 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 345 9.3e-32 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 345 9.3e-32 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 344 9.8e-32 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 345 1.0e-31 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 345 1.0e-31 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 347 1.1e-31 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 345 1.1e-31 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 344 1.2e-31 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 344 1.2e-31 2
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 357 1.2e-31 1
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 348 1.9e-31 2
WB|WBGene00004244 - symbol:puf-8 species:6239 "Caenorhabd... 324 2.1e-31 2
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 355 2.6e-31 1
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 352 2.8e-31 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 353 4.2e-31 1
CGD|CAL0000998 - symbol:PUF3 species:5476 "Candida albica... 334 5.8e-31 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 351 7.0e-31 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 326 1.5e-30 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 344 2.1e-30 1
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 327 2.6e-30 2
CGD|CAL0004399 - symbol:orf19.5381 species:5476 "Candida ... 335 2.3e-29 1
ASPGD|ASPL0000000865 - symbol:AN6587 species:162425 "Emer... 322 6.9e-28 1
ZFIN|ZDB-GENE-081031-76 - symbol:pum2 "pumilio homolog 2 ... 271 2.4e-20 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 207 4.0e-16 1
WB|WBGene00001401 - symbol:fbf-1 species:6239 "Caenorhabd... 151 2.0e-13 3
UNIPROTKB|Q9N5M6 - symbol:fbf-1 "Fem-3 mRNA-binding facto... 151 2.0e-13 3
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 198 2.4e-13 1
GENEDB_PFALCIPARUM|PFD0825c - symbol:PFD0825c "RNA-bindin... 201 4.3e-13 1
UNIPROTKB|Q8I1R7 - symbol:PFD0825c "RNA-binding protein o... 201 4.3e-13 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 173 2.1e-12 1
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 188 3.4e-12 1
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 187 4.5e-12 1
WB|WBGene00022257 - symbol:puf-11 species:6239 "Caenorhab... 180 9.3e-11 1
WB|WBGene00001402 - symbol:fbf-2 species:6239 "Caenorhabd... 163 1.1e-10 3
ASPGD|ASPL0000066087 - symbol:AN7474 species:162425 "Emer... 183 1.5e-10 1
POMBASE|SPBC56F2.08c - symbol:SPBC56F2.08c "RNA-binding p... 178 2.5e-10 1
WB|WBGene00004239 - symbol:puf-3 species:6239 "Caenorhabd... 169 1.5e-09 1
UNIPROTKB|Q9U2G4 - symbol:puf-3 "Protein PUF-3" species:6... 169 1.5e-09 1
POMBASE|SPBP35G2.14 - symbol:SPBP35G2.14 "RNA-binding pro... 166 7.7e-09 2
SGD|S000006246 - symbol:PUF2 "Member of the PUF protein f... 165 1.3e-08 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 158 2.7e-08 1
CGD|CAL0000283 - symbol:orf19.4262 species:5476 "Candida ... 154 6.8e-08 1
POMBASE|SPCC1682.08c - symbol:SPCC1682.08c "RNA-binding p... 150 3.2e-07 1
SGD|S000003851 - symbol:JSN1 "Member of the Puf family of... 149 1.2e-06 2
WB|WBGene00004242 - symbol:puf-6 species:6239 "Caenorhabd... 106 1.9e-06 2
WB|WBGene00004243 - symbol:puf-7 species:6239 "Caenorhabd... 110 2.9e-06 2
WB|WBGene00004241 - symbol:puf-5 species:6239 "Caenorhabd... 123 0.00021 1
POMBASE|SPAC4G9.05 - symbol:mpf1 "meiotic PUF family prot... 120 0.00048 1
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 662 (238.1 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 133/299 (44%), Positives = 191/299 (63%)
Query: 150 DLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVE 209
D++G + +AKDQ+GCR LQR + +IF EVI V ELM+DPFGNY++QKL++
Sbjct: 333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVT 269
+C+EEQRT+I+L+ T + QL+RI LN +G R V +L+E + + +QISLV ALRPG +
Sbjct: 393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452
Query: 270 LTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRE 329
L KD NG++VIQ C++ S ED K++ + C IAT + GCCVLQ C+ YS QRE
Sbjct: 453 LIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQRE 512
Query: 330 RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVE 389
+ D +GNY VQ ++ LR+P A +L QL+GHYV S K+ S++VE
Sbjct: 513 KLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Query: 390 RCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSSPPISVCKP 448
RCL+ E + +I+ EL+ P+ LL P+ N+VIQ+AL +K L +S + V +P
Sbjct: 573 RCLMHCPESRP-QIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASL-VEVIRP 629
Score = 138 (53.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 56/247 (22%), Positives = 107/247 (43%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPK-EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELC 211
G ++ ++ + YG R +QR + ++ ++I ++ + + +L+ D GN+V+Q+ ++
Sbjct: 411 GQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCL 470
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLT 271
S E I T F I + HG + K + Q+ L+ A + ++ L
Sbjct: 471 STEDNKFIFDAATK--F-CTEIATHRHGCCVLQKCIAYSMRQQREKLI-AEISRNSLLLA 526
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK-SGCCV---LQHCVEYSKGAQ 327
+D G+Y +Q+ ++ +L ++ + ++ K S V L HC E
Sbjct: 527 QDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIV 586
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
RE D Y N+V+Q LA + ASL+ + H + + N Y +
Sbjct: 587 RE---LVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPHSILRN-NPYCKRI 642
Query: 388 VERCLLE 394
R LL+
Sbjct: 643 FSRNLLK 649
Score = 43 (20.2 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 13 ETTRFGSPSRGLPAAHFRRPRQESPRLPNTSLNEKSYFDET 53
E + G S G P FR P++ S N S S FD++
Sbjct: 161 EPSNGGFVSGGFPYGFFRPPKESSI---NQSCASWSGFDQS 198
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 131/299 (43%), Positives = 193/299 (64%)
Query: 150 DLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVE 209
+ +G + +AKDQ+GCR LQ + +IF EVI V ELM+DPFGNY++QKL++
Sbjct: 198 EFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLD 257
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVT 269
+C+EEQRT+I+LM+T++ QL+RI LN +G R V +L+E++ +QISLV +ALRPG +
Sbjct: 258 VCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLN 317
Query: 270 LTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRE 329
L +D NG++VIQ C++ S ED +++ + C IAT + GCCVLQ C+ YS G QRE
Sbjct: 318 LIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQRE 377
Query: 330 RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVE 389
+ D YGNY VQ +L LR A++L QL+GHYV S K+ S++VE
Sbjct: 378 KLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVE 437
Query: 390 RCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSSPPISVCKP 448
RCL E + +I+ EL+ P+ +L+ P+ N+VIQ+AL V+K L ++ + V +P
Sbjct: 438 RCLTHCPESRP-QIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHATL-VEVIRP 494
Score = 138 (53.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 50/245 (20%), Positives = 110/245 (44%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLP-KEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELC 211
G ++ ++ + YG R +QR + S+ +++I ++ + L+ D GN+V+Q+ ++
Sbjct: 276 GQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCL 335
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLT 271
S E I T F + I + HG + K + + Q+ LV R ++ L
Sbjct: 336 STEDNEFIFEDATK--F-CIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISR-NSLFLA 391
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERX 331
+D G+Y +Q+ ++ +L ++ + ++ K +++ C+ + ++ +
Sbjct: 392 QDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIV 451
Query: 332 XXXXXX-XXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
D Y N+V+Q LA+ + A+L+ + H + + N Y + R
Sbjct: 452 RELISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPHSILRN-NPYCKRIFSR 510
Query: 391 CLLES 395
LL++
Sbjct: 511 NLLKN 515
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 126/311 (40%), Positives = 191/311 (61%)
Query: 124 RNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMI 183
+NQ L++ N +S+ + RG I LAKDQ+GCR LQR S +IEMI
Sbjct: 251 QNQLNEDLTMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMI 310
Query: 184 FVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAV 243
F E+ID + ELM+DPFGNY+VQKL+E+C+E+QR +I+ +T L++I + HG RAV
Sbjct: 311 FNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAV 370
Query: 244 LKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNC 303
K++E ++IS++++AL+ G V L K+ NG++V+Q C+++ K+L +C
Sbjct: 371 QKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHC 430
Query: 304 YGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQI 363
+ATD+ GCCVLQ C+ YS+G Q++ D +GNYV+Q++ L++
Sbjct: 431 VELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWA 490
Query: 364 TASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGN 423
T +L QLEG+Y S K SNVVE+CL + ++ RII EL+ + +++ P+GN
Sbjct: 491 TFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGN 550
Query: 424 YVIQSALLVSK 434
YVIQ+AL SK
Sbjct: 551 YVIQAALKQSK 561
Score = 177 (67.4 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 74/287 (25%), Positives = 125/287 (43%)
Query: 155 IVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMI----DPFGNYVVQKLVEL 210
I L D +G +L + + + E+ M V I R L+I D G VQK+VE
Sbjct: 318 ISELMMDPFG-NYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVET 376
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
E+ I++ +V + N +G V + L+ L P + A V L
Sbjct: 377 AKREEEISIIISALKHG--IVHLIKNVNGNHVVQRCLQYLL-PYCGKFLFEAAITHCVEL 433
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYS-KGAQRE 329
D +G V+Q C+ + E ++L++E+A N ++ D G VLQ+ E + A E
Sbjct: 434 ATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFE 493
Query: 330 RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQL--EGHYVSFSCNKYGSNV 387
C N VV+ L L + A ++R+L G + YG+ V
Sbjct: 494 ILEQLEGNYTELSMQKCSSN-VVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYV 552
Query: 388 VERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
++ L +S + ++++ ++ N+S L +P+G V+ SAL K
Sbjct: 553 IQAALKQS-KGNVHALLVDAIKL-NISSLRTNPYGKKVL-SALSSKK 596
Score = 148 (57.2 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 55/240 (22%), Positives = 106/240 (44%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR-VCELMIDPFGNYVVQKLVE-L 210
G ++ ++ D +G R +Q+ + + +EE I + + + L+ + GN+VVQ+ ++ L
Sbjct: 355 GLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYL 414
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
+ +T+ V + + HG + K L Q+ LV + + A+ L
Sbjct: 415 LPYCGKFLFEAAITH----CVELATDRHGCCVLQKCLGYSEGEQKQHLV-SEIASNALLL 469
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
++D G+YV+QY + T +L ++ N ++ K V++ C++ + R R
Sbjct: 470 SQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRAR 529
Query: 331 XXXXXXXXXXXXXX--DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVV 388
D YGNYV+Q L + A L+ ++ + S N YG V+
Sbjct: 530 IIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 129/295 (43%), Positives = 188/295 (63%)
Query: 140 QDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPF 199
+DS D +S+ D G++ +AKDQ GCR LQ+ + ++ +IF EVI+ V EL DPF
Sbjct: 231 EDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPF 290
Query: 200 GNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLV 259
GNY++QKL+E+C+EEQRT+IL+ LT+ LV+I +N +G R V KL+E +T +QISLV
Sbjct: 291 GNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLV 350
Query: 260 LAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHC 319
+AL PG ++L ++ NG++VI C+K FS D K++L C IAT + GCCVLQ C
Sbjct: 351 KSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRC 410
Query: 320 VEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
V YS G Q E+ D +GNY+VQ+++ +V + ++L +L G+YV +
Sbjct: 411 VSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLA 468
Query: 380 CNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
K+GS+VVE+CL E +S +I+ EL+ N LL P+ NYVIQ AL +K
Sbjct: 469 TQKFGSHVVEKCLRYYPESRS-QIVNELVSVLNFGYLLQDPYANYVIQCALSKTK 522
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 54/242 (22%), Positives = 103/242 (42%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLP-KEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELC 211
G +V ++ + YG R +Q+ + ++ KE+I ++ ++ L + GN+V+ ++
Sbjct: 319 GLLVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFF 378
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLT 271
S IL T F + I HG + + + Q LV R ++ L
Sbjct: 379 SPNDNKFILEAATK--F-CIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISR-NSLLLA 434
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERX 331
+D G+Y++QY ++ +L E+ N +AT K G V++ C+ Y ++ +
Sbjct: 435 QDPFGNYLVQYIIE--KKVGGVNVLFELRGNYVKLATQKFGSHVVEKCLRYYPESRSQIV 492
Query: 332 XXXXXXXXXXXXX-DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
D Y NYV+Q L+ + ASL+ ++ Y + Y + +
Sbjct: 493 NELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRASLVEKVR-RYENLKMTPYCKRIFSK 551
Query: 391 CL 392
L
Sbjct: 552 NL 553
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 133/339 (39%), Positives = 197/339 (58%)
Query: 96 QDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNI 155
+DSS+L+ H L ++ E + + +S K N D S+ ++ G++
Sbjct: 201 EDSSLLSPFHEKVSGKLGASYLEDTVLIGQGSYGKMSPKSNN------DLVSMVEIYGSV 254
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+AKDQ GCR LQ+ + E ++I + +ID V EL +DPFGNY+VQKL ++ EEQ
Sbjct: 255 NLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQ 314
Query: 216 RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTN 275
RT I+ +LT++ +L+RICLNT+G R V K++E + QQI+LV + L+PG + L KD N
Sbjct: 315 RTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLN 374
Query: 276 GHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXX 335
G++VIQ C++ D +++L C IA + GCCVLQ C+ S G QRER
Sbjct: 375 GNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEI 434
Query: 336 XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLES 395
D +GNYVVQ+L+ +V + LL Q HY + K+ S+V+E+CL +
Sbjct: 435 SRNSLHLSQDPFGNYVVQYLIDQQVSAV--KLLVQFRMHYAELATQKFSSHVIEKCLRKY 492
Query: 396 GEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
E ++ I+ ELL PN LL P+ NYVIQ+AL V+K
Sbjct: 493 PESRA-EIVRELLCVPNFEYLLQDPYANYVIQTALSVTK 530
Score = 125 (49.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 49/242 (20%), Positives = 102/242 (42%)
Query: 155 IVALAKDQYGCRHLQRTMSSLP-KEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSE 213
++ + + YG R +Q+ + ++ K++I ++ + L+ D GN+V+Q ++
Sbjct: 329 LIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGP 388
Query: 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKD 273
+L T I ++ HG + + N Q+ LV A + ++ L++D
Sbjct: 389 NDNEFVLEAATK---YCAEIAIHRHGCCVLQCCISNSVGLQRERLV-AEISRNSLHLSQD 444
Query: 274 TNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCV-EYSKGAQRERXX 332
G+YV+QY + LL + + +AT K V++ C+ +Y +
Sbjct: 445 PFGNYVVQYLIDQ--QVSAVKLLVQFRMHYAELATQKFSSHVIEKCLRKYPESRAEIVRE 502
Query: 333 XXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCL 392
D Y NYV+Q L++ + A L+ ++ Y + Y + + +
Sbjct: 503 LLCVPNFEYLLQDPYANYVIQTALSVTKGPVRAKLVAKVY-RYGKLHSSPYCKKIFSKTI 561
Query: 393 LE 394
L+
Sbjct: 562 LK 563
Score = 42 (19.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 104 LHNHNFDGLRSNGNELSSVPR------NQWMSSLSLKRNQ-WLQDSFDCSSLRD--LRGN 154
L N+NF G+ + E+ + R N + L+LK ++ +L D R LRGN
Sbjct: 110 LQNNNFHGVSPSPGEMRLLGRQDSFNLNGFEEMLALKNHRDFLLDQIHEPIKRPPFLRGN 169
Query: 155 IVALAKDQY-GCRHLQRTMSSL 175
++ + G + +T++++
Sbjct: 170 DALISSLMFEGNNRVSQTLAAM 191
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 112/291 (38%), Positives = 177/291 (60%)
Query: 144 DCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYV 203
D S+ ++ G++ +A+DQ GCR LQ+ + + ++IF+E+ID V EL +DP GNY+
Sbjct: 207 DLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYI 266
Query: 204 VQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAAL 263
VQKL+ + EEQRT I+ +LT+ +L++ICLNT+G R + K+++ + QQI+LV +AL
Sbjct: 267 VQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSAL 326
Query: 264 RPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYS 323
PG + L D+NG++V+Q C++ D K+++ + C +AT + GC VLQ + +
Sbjct: 327 EPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINT 386
Query: 324 KGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKY 383
G Q ER D +GNYVVQ L+ +V + +LL H + + K+
Sbjct: 387 VGLQHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQKF 444
Query: 384 GSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
S+V+E+CL + E ++ I+ ELL PN LL P+ NYVIQ+AL V+K
Sbjct: 445 SSHVIEKCLRKYPESRA-EIVRELLSYPNFEQLLQDPYANYVIQTALSVTK 494
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 536 (193.7 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 109/291 (37%), Positives = 173/291 (59%)
Query: 146 SSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQ 205
+S+ + G+I L +DQ+GCR LQ+ + + E+IF EV D + ELM DPFGNY+ Q
Sbjct: 707 TSIDQVMGSIYPLCRDQHGCRFLQKKLEESDLQLTEIIFKEVCDYMLELMTDPFGNYLCQ 766
Query: 206 KLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRP 265
KL+E C++ QR I+ + D +VRI +N HG RAV K++E LT P+QI L+ +L+
Sbjct: 767 KLLEHCNDRQRLTIIEKVGTD---IVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKD 823
Query: 266 GAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADN--CYGIATDKSGCCVLQHCVEYS 323
V L +D NG++VIQ C+ S +D +++ + V+ + C +AT + GCCVLQ C++++
Sbjct: 824 SVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHA 883
Query: 324 KGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKY 383
+Q+ + D YGNYVVQ++L L + + ++ GH + K+
Sbjct: 884 SESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLATEMAKRFVGHVPILATQKF 943
Query: 384 GSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
SNVVE+CL + +I E++ N+ LL P+ NYVIQ++L +S+
Sbjct: 944 SSNVVEKCLHVADAITRGYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISE 994
Score = 175 (66.7 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 70/339 (20%), Positives = 151/339 (44%)
Query: 95 NQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGN 154
N+ ++ N +N+N + +N N S+ N ++ + + + L S++ L
Sbjct: 593 NKQNNRNNNNNNNNSNNNNNNSNNNSTNSNNTQNNNNNTQSRKSLPVELQPSNIMQLT-K 651
Query: 155 IVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEE 214
+ +K Q G R M + + +M + + + DP + + +K ++L + +
Sbjct: 652 VQPHSKQQQGGRGRNNPMM---QNQQQMAQLSITSPP---ITDPITSDISKK-IDLIANK 704
Query: 215 QRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDT 274
T I ++ + + +C + HG R + K LE ++ Q ++ + + L D
Sbjct: 705 TYTSIDQVMGS----IYPLCRDQHGCRFLQKKLEE-SDLQLTEIIFKEVCDYMLELMTDP 759
Query: 275 NGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY-SKGAQRERXXX 333
G+Y+ Q ++H + ++ +V + I+ + G +Q +EY + Q +
Sbjct: 760 FGNYLCQKLLEHCNDRQRLTIIEKVGTDIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKR 819
Query: 334 XXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQL--EGHYVSFSCNKYGSNVVERC 391
D GN+V+Q L PQ + + +G ++ + +++G V++RC
Sbjct: 820 SLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIAVATHRHGCCVLQRC 879
Query: 392 LLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
+ + E Q ++I E++ N +L+ P+GNYV+Q L
Sbjct: 880 IDHASESQKLQLIQEVIA--NSLVLVQDPYGNYVVQYVL 916
Score = 167 (63.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 56/248 (22%), Positives = 107/248 (43%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPK-EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
+IV ++ + +G R +Q+ + L E+I++I + D V L+ D GN+V+QK + S
Sbjct: 787 DIVRISMNMHGTRAVQKMIEYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLS 846
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
Q + + + D + + + HG + + +++ + Q++ L+ + ++ L +
Sbjct: 847 P-QDNQFIYDAVSSDGSCIAVATHRHGCCVLQRCIDHASESQKLQLIQEVIA-NSLVLVQ 904
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG----IATDKSGCCVLQHCVEYSKGAQR 328
D G+YV+QY V + L E+A G +AT K V++ C+ + R
Sbjct: 905 DPYGNYVVQY-VLDLPFQG---LATEMAKRFVGHVPILATQKFSSNVVEKCLHVADAITR 960
Query: 329 ERXXXXXXXXXXXXXX--DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
D Y NYV+Q L + P L+ + H YG
Sbjct: 961 GYLIQEVIDYDNLLHLLQDPYANYVIQTSLTISEPHQHTKLVEAIRPHLPLLKNTPYGKR 1020
Query: 387 VVERCLLE 394
+ + + E
Sbjct: 1021 IQNKIIKE 1028
Score = 43 (20.2 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 106 NHNFDGLRSNGNELSSVPRNQWMSSLS 132
N FD RSN N S+PR+ SSL+
Sbjct: 316 NQFFDEPRSNSN---SLPRSTSNSSLN 339
Score = 42 (19.8 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 27/107 (25%), Positives = 44/107 (41%)
Query: 29 FRRPRQESPRLP----NTSLNE--KSYFDETDLSAYFSHLNVNDRIFDNPVHHFPLVENG 82
F PR S LP N+SLN+ + +++++ ++ N N+ P P NG
Sbjct: 319 FDEPRSNSNSLPRSTSNSSLNQIFEPQLRNSNINSNNNNNNSNNNNNKQPPQ--PPQSNG 376
Query: 83 FFSHPCQEAEPINQDSSILNLLHN----HNFDGLRSNGNELSSVPRN 125
+ PI + + NLLH+ + F N N +S N
Sbjct: 377 VSGNGAI-VRPIAKVGN--NLLHSPIDLNQFSNFNGNMNGTTSNNNN 420
Score = 38 (18.4 bits), Expect = 6.5e-52, Sum P(2) = 6.5e-52
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 95 NQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRN 136
N +SS N N N + SN N +SV + S+ S N
Sbjct: 525 NNNSSSSNNNTNTNNNHNNSNNNNNNSVNNSNSNSNSSNNNN 566
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 117/296 (39%), Positives = 180/296 (60%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+R +++ AKD LQ ++ KE I+ IF +I VCELM+D +G+ V +KL+E
Sbjct: 151 IRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEK 210
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
C++EQ TR+L ++ + F+ VR+C++THG A+ L+ +L + +QIS + L ++ L
Sbjct: 211 CTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLL 270
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
TKD H VI +C FS T+YLL + NCY +A D++GCC+L+ + S R+
Sbjct: 271 TKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDP 330
Query: 331 XXXXXXXXXXXXXXDCYG----------NYVVQHLLALRVPQITASLLRQLEGHYVSFSC 380
+CYG NYVVQ+LL L+ ++T++L + L+G+YV S
Sbjct: 331 LIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSY 390
Query: 381 NKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVR 436
+KYGS+VV++CL ES E S RII ELL ++ LL+ P+G+YVIQ+A +VS+VR
Sbjct: 391 DKYGSHVVQKCL-ESREFSSRRIIAELLS--DIDSLLVDPYGDYVIQTAWIVSEVR 443
Score = 127 (49.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 64/274 (23%), Positives = 109/274 (39%)
Query: 139 LQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE---LM 195
L+++ D +L ++ L D YG + ++ M E+I + V++ E L
Sbjct: 176 LKETID-KIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLEEPFEFVRLC 234
Query: 196 IDPFGNYVVQKLVE-LCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQ 254
+ G + +Q L+ LCSEEQ +R + L L + + H R +L N +P
Sbjct: 235 VHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVI-AH--RVILFCF-NQFSPS 290
Query: 255 QISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD-------NCYGIA 307
+L + + D NG +++ ++ S E L+ E+ NCYG
Sbjct: 291 HTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTL 350
Query: 308 TDKSGCC---VLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRV---P 361
T KS V+Q+ + D YG++VVQ L R
Sbjct: 351 TPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSR 410
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLES 395
+I A LL ++ S + YG V++ + S
Sbjct: 411 RIIAELLSDID----SLLVDPYGDYVIQTAWIVS 440
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 106/279 (37%), Positives = 164/279 (58%)
Query: 152 RGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELC 211
R I L KDQ+GCR+LQR + ++++MIF E V ELM DPFGNY+ QKL+E
Sbjct: 238 RNEIYGLCKDQHGCRYLQRKLEERNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYS 297
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLT 271
++EQRT +++ QLV+I LN HG RA+ K++E ++ +Q V+ AL+ V L
Sbjct: 298 NDEQRT---VLVNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELV 354
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERX 331
+D NG++VIQ C+ + E ++++ + V C + T + GCCVLQ C++++ GAQR R
Sbjct: 355 QDLNGNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARL 414
Query: 332 XXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERC 391
D +GNYVVQ++L L + T L R+ S +K+ SNV+E+C
Sbjct: 415 IEQITENAFALVQDPFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKC 474
Query: 392 LLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
L + EE ++I E+L + +L + NYV+Q+A+
Sbjct: 475 LRTADEEMRRQMIEEMLAGDELEKMLRDSYANYVVQTAM 513
Score = 197 (74.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 53/214 (24%), Positives = 100/214 (46%)
Query: 229 QLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFS 288
++ +C + HG R + + LE N Q+ ++ A + L D G+Y+ Q +++ +
Sbjct: 240 EIYGLCKDQHGCRYLQRKLEE-RNDDQLQMIFAETHSHVIELMTDPFGNYLCQKLLEYSN 298
Query: 289 HEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY-SKGAQRERXXXXXXXXXXXXXXDCY 347
E L+N+ A IA ++ G LQ +E+ S Q + D
Sbjct: 299 DEQRTVLVNKAAPQLVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLN 358
Query: 348 GNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIEL 407
GN+V+Q L + + + + V+ +++G V++RC+ + Q R+I ++
Sbjct: 359 GNHVIQKCLNRLTAEKSQFIYDAVGAQCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQI 418
Query: 408 LRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSSP 441
+ N L+ PFGNYV+Q L +++ R F+ P
Sbjct: 419 --TENAFALVQDPFGNYVVQYILDLAEAR-FTEP 449
Score = 164 (62.8 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 56/249 (22%), Positives = 105/249 (42%)
Query: 155 IVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI-DRVCELMIDPFGNYVVQKLVELCSE 213
+V +A +Q+G R LQ+ + + EE ++ + D V EL+ D GN+V+QK + +
Sbjct: 313 LVKIALNQHGTRALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTA 372
Query: 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKD 273
E+ I + Q V + + HG + + +++ + Q+ L+ + A L +D
Sbjct: 373 EKSQFIYDAV---GAQCVTVGTHRHGCCVLQRCIDHASGAQRARLI-EQITENAFALVQD 428
Query: 274 TNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXX 333
G+YV+QY + T+ L E ++ K V++ C+ + R +
Sbjct: 429 PFGNYVVQYILDLAEARFTEPLCREFLSRIPKLSKHKFSSNVIEKCLRTADEEMRRQMIE 488
Query: 334 XXXXXXXXXXX--DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERC 391
D Y NYVVQ + P A +++ +E S +G + +
Sbjct: 489 EMLAGDELEKMLRDSYANYVVQTAMDYADPATRARIVKYIEPILPSLRGTPHGRRIGSKI 548
Query: 392 LLESGEEQS 400
E+ S
Sbjct: 549 APENSGRSS 557
Score = 152 (58.6 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 46/229 (20%), Positives = 105/229 (45%)
Query: 97 DSSILNLLHNHNFDGLRSNGNELSSVPRNQW-MSSLSLKRNQWLQDSFDCSSLRDLRGNI 155
DS+ L+ +NH + R NE+ + ++Q L K + D + ++
Sbjct: 222 DSAQLSRFNNHPIEYYR---NEIYGLCKDQHGCRYLQRKLEERNDDQLQMI-FAETHSHV 277
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+ L D +G Q+ + E+ ++ + ++ ++ ++ G +QK++E S E+
Sbjct: 278 IELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAAPQLVKIALNQHGTRALQKMIEFISTEE 337
Query: 216 RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTN 275
+T+ ++ D +V + + +G + K L LT ++ + A+ VT+ +
Sbjct: 338 QTQTVIDALKD--HVVELVQDLNGNHVIQKCLNRLT-AEKSQFIYDAVGAQCVTVGTHRH 394
Query: 276 GHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSK 324
G V+Q C+ H S L+ ++ +N + + D G V+Q+ ++ ++
Sbjct: 395 GCCVLQRCIDHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAE 443
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 104/289 (35%), Positives = 167/289 (57%)
Query: 142 SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGN 201
S +SL NI++ KDQ+GCR+LQR + + I+ +F E + LM+D FGN
Sbjct: 335 SSSVASLSLQNSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGN 394
Query: 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLA 261
Y+ QKL E SE QR+ + ++ +LV I N HG RA+ K+++ +++P QIS ++
Sbjct: 395 YLCQKLFEHASEAQRSTFIQIIAP---KLVPISFNMHGTRALQKIIDLVSSPDQISCIVN 451
Query: 262 ALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVE 321
ALRP V LTKD NG++VIQ C+ FS ED +++ + + ++ ++T + GCCV+Q C +
Sbjct: 452 ALRPNVVLLTKDLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFD 511
Query: 322 YSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
++ AQ E+ D +GNYV+Q++L L P T +++ + S
Sbjct: 512 HASPAQIEQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQ 571
Query: 382 KYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
K+ SNV+E+C+ + ++I EL+ ++ LL F NYVIQ+AL
Sbjct: 572 KFSSNVMEKCIFFAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTAL 620
Score = 156 (60.0 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 52/239 (21%), Positives = 107/239 (44%)
Query: 155 IVALAKDQYGCRHLQRTMSSLPK-EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSE 213
+V ++ + +G R LQ+ + + ++I I + V L D GN+V+QK + S+
Sbjct: 420 LVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNGNHVIQKCLNKFSQ 479
Query: 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKD 273
E I + D + + HG V + ++ +P QI ++ + P A+TL +D
Sbjct: 480 EDCQFIFDAICEDPLD---VSTHRHGCCVVQRCFDH-ASPAQIEQLVEHIVPHALTLVQD 535
Query: 274 TNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXX 333
G+YV+QY ++ + T+ +++ ++T K V++ C+ ++ A +E+
Sbjct: 536 AFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFAPAAIKEKLIS 595
Query: 334 XXXXXXXX--XXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
D + NYV+Q L + A L+ +++ S G ++ +
Sbjct: 596 ELMDEKHLPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPSIKNTPCGRRILSK 654
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 490 (177.5 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
Identities = 113/335 (33%), Positives = 177/335 (52%)
Query: 107 HNFDGLRSNGNELSSVPRNQWMSS-----LS-LKRNQWLQDSFD--CSSLRDLRGNIVAL 158
++F G S N S VP + ++ LS L +N+ + S D L G++ +
Sbjct: 412 NSFFGSHSTSN-YSKVPLSAKLTGEKSDDLSNLLKNKGKKKSQDNQIPHLVGFLGHLSTI 470
Query: 159 AKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTR 218
KDQYGCR+LQ+ + PK + F E+ V +LMIDPFGNY+ QKL S EQ+
Sbjct: 471 CKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASREQK-- 528
Query: 219 ILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHY 278
L ML +V IC N +G R++ +++ LT+ +QISL+L + P TL D NG +
Sbjct: 529 -LSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTH 587
Query: 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXX 338
V+Q C+ F E + L + +N +AT++ GCC+LQ C++ + G +ER
Sbjct: 588 VLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKS 647
Query: 339 XXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEE 398
+ YGNY+VQH+L L + T ++ + G+ S K+ SN +E+C+ +
Sbjct: 648 CLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPS 707
Query: 399 QSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVS 433
+++ E L PN+ LL + NYV+Q L V+
Sbjct: 708 TREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVA 742
Score = 158 (60.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 49/248 (19%), Positives = 105/248 (42%)
Query: 146 SSLRDLRGNIVALAKDQYGCRHLQRTMSSLPK-EEIEMIFVEVIDRVCELMIDPFGNYVV 204
S L + IV + + YG R +Q + L E+I ++ +I + L D G +V+
Sbjct: 530 SMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVL 589
Query: 205 QKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALR 264
QK + E+ + L + + L+ + N HG + + L+ Q LV + ++
Sbjct: 590 QKCIAKFPPEKLEPLFLSMEEN---LITLATNRHGCCILQRCLDRTNGDIQERLVNSIIK 646
Query: 265 PGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSK 324
+ L ++ G+Y++Q+ ++ T+ ++ + N ++ K ++ C+ +
Sbjct: 647 -SCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTAS 705
Query: 325 GAQRERXXXXXXXX--XXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNK 382
+ RE+ DCY NYV+Q L + +LR + +
Sbjct: 706 PSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPKIQNTR 765
Query: 383 YGSNVVER 390
+G +++ +
Sbjct: 766 HGRHILAK 773
Score = 41 (19.5 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 48 SYFDETDLSAYFSHLNVNDR 67
S DE A +LN+NDR
Sbjct: 212 SLIDEESKLASLRNLNINDR 231
>TAIR|locus:2167771 [details] [associations]
symbol:PUM13 "pumilio 13" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 IPI:IPI00522991 RefSeq:NP_199123.1
UniGene:At.55330 ProteinModelPortal:Q9FMH4 SMR:Q9FMH4 PaxDb:Q9FMH4
PRIDE:Q9FMH4 EnsemblPlants:AT5G43090.1 GeneID:834325
KEGG:ath:AT5G43090 TAIR:At5g43090 HOGENOM:HOG000136003
InParanoid:Q9FMH4 OMA:NGERNIW PhylomeDB:Q9FMH4
ProtClustDB:CLSN2686651 Genevestigator:Q9FMH4 Uniprot:Q9FMH4
Length = 527
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 116/315 (36%), Positives = 176/315 (55%)
Query: 125 NQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIF 184
N W S+ NQ D SS+ + RG+ ++A D+ + L++T+ KE I+MIF
Sbjct: 187 NSWRSNEGCTYNQ---DQA-ASSMENGRGSYFSIATDRVWSKELEKTIFVGTKETIDMIF 242
Query: 185 VEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVL 244
+I +CELM+DPFGN VV+ L+ CS EQ I+ ++T + V IC N G A+
Sbjct: 243 DGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQ 302
Query: 245 KLLENLTNP--QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADN 302
LL ++ QI ++ A+ A+ LT++TN YVI C + F+ + LL V+ +
Sbjct: 303 VLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQH 362
Query: 303 CYGIATDKSGCCVLQHCVEYSKGAQ---RERXXXXXXXXXXXXXXDCYGNYVVQHLLALR 359
CY IA D++GCC+LQ C + + R+R +C+GNYVVQ+++ L
Sbjct: 363 CYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELD 422
Query: 360 VPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMH 419
T L+ +L +Y + NKYGS+VV++ L G + S I+++LLR + LL+
Sbjct: 423 NQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGID-SKLIVVDLLRG--IDTLLLD 479
Query: 420 PFGNYVIQSALLVSK 434
PFGNYVIQ+A VSK
Sbjct: 480 PFGNYVIQTAWFVSK 494
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/232 (20%), Positives = 105/232 (45%)
Query: 164 GCRHLQRTMSSLPKEEIEMI--FVEVIDRVC-ELMIDPFGNYVVQKLVELCSEEQRTRIL 220
G +Q ++S+ + I ++ I V +L + YV+ + + Q R+L
Sbjct: 297 GTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLL 356
Query: 221 LMLTNDDFQLVRICLNTHGIRAVLKLL--ENLTNPQQISLVLAALRPGAVTLTKDTNGHY 278
+++ +Q I ++ +G + + E + N + +++ + A+ L + +G+Y
Sbjct: 357 EVVSQHCYQ---IAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNY 413
Query: 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXX 338
V+QY V+ + +T L+N++ N +A +K G V+Q ++ +G +
Sbjct: 414 VVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKL-RGIDSKLIVVDLLRG 472
Query: 339 XXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
D +GNYV+Q + + L +E + CNK+G+ ++E+
Sbjct: 473 IDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEK 524
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 480 (174.0 bits), Expect = 7.2e-45, P = 7.2e-45
Identities = 114/338 (33%), Positives = 190/338 (56%)
Query: 105 HNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDS--FDCSSLRDLRGNIVALAKDQ 162
+N+N + +N N +S N S S ++ + +++S F + L G+I +L KDQ
Sbjct: 520 YNNNNNNNNNNNNNNNSNATN----SNSAEKQRKIEESSRFADAVLDQYIGSIHSLCKDQ 575
Query: 163 YGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLM 222
+GCR LQ+ + L + + IF E D ELM D FGNY++QKL+E + EQR +L
Sbjct: 576 HGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRI-VLTK 634
Query: 223 LTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQY 282
+++ F V I LN HG RA+ KL+E + ++ +V+ +LRP V L+KD NG++VIQ
Sbjct: 635 ISSPHF--VEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQK 692
Query: 283 CVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXX 342
C++ E+ +++ + ++D+C IAT + GCCVLQ C+++ Q +
Sbjct: 693 CLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKL 752
Query: 343 XXDCYGNYVVQHLLALRVPQ----ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEE 398
D +GNYVVQ+++ + T ++ L+ + S +K+GSNV+E+ L +
Sbjct: 753 TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTA--I 810
Query: 399 QSTRIIIELLRS---PNVSMLLMHPFGNYVIQSALLVS 433
S +I+E+L + + LL +GNYV+Q+AL +S
Sbjct: 811 VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDIS 848
>TAIR|locus:2167786 [details] [associations]
symbol:PUM14 "pumilio 14" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB008267 eggNOG:COG5099 HOGENOM:HOG000136003
ProtClustDB:CLSN2686651 EMBL:DQ056705 IPI:IPI00526385
RefSeq:NP_199125.2 UniGene:At.55331 ProteinModelPortal:Q4PSD1
SMR:Q4PSD1 PRIDE:Q4PSD1 EnsemblPlants:AT5G43110.1 GeneID:834328
KEGG:ath:AT5G43110 TAIR:At5g43110 InParanoid:Q4PSD1
PhylomeDB:Q4PSD1 Genevestigator:Q4PSD1 Uniprot:Q4PSD1
Length = 518
Score = 432 (157.1 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 115/339 (33%), Positives = 181/339 (53%)
Query: 110 DGLRSNG--NELSSVPRNQWMSSLSLKR------NQWL-QDSFDCSSLRDLRGNIVALAK 160
+G+ +NG N++ S R++ +S R N W + FD + + + A AK
Sbjct: 155 NGMLNNGFLNDVPSSSRDR-VSDYYTNRFGYEGYNYWRGNEGFDYNQCQ---ASFSAFAK 210
Query: 161 DQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRIL 220
D+ L ++ KE ++ I+ +I +CELM+DP+G+ VVQ L+ CS EQ +++
Sbjct: 211 DKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLV 270
Query: 221 LMLTNDDFQLVRICLNTHGIRAVLKLLE--NLTNPQQISLVLAALRPGAVTLTKDTNGHY 278
++T FQ V IC+++ G A+ LL N QI ++ +R A+ L+K + +
Sbjct: 271 DIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNHAIF 330
Query: 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ---RERXXXXX 335
VI C + F + LL + NC+ IA D+ GCC+LQ C + R+R
Sbjct: 331 VILACFRLFPLH-CRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLIMEA 389
Query: 336 XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLES 395
+CYGNYVVQ+++ L + +L+RQL G+Y + NKYGS+ V++ LL+
Sbjct: 390 IANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQK-LLKL 448
Query: 396 GEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
S I+I+LLR + LL+ PFGNYVIQ+A VSK
Sbjct: 449 RWIDSRVIVIDLLRE--IDTLLLDPFGNYVIQTAWFVSK 485
Score = 127 (49.8 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 69/333 (20%), Positives = 138/333 (41%)
Query: 106 NHNFDGLRSNGNELSSVPRNQWMSS-LSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYG 164
N FD + + S+ +++ MS L + Q +++ D + L G+I L D YG
Sbjct: 193 NEGFDYNQCQAS-FSAFAKDKEMSERLGMSIFQGTKETVD-AIYNGLIGDICELMVDPYG 250
Query: 165 CRHLQRTMSSLPKEEIEMIFVEVIDR----VCELMIDPFGNYVVQKLVELCSEEQRTRIL 220
+Q M E+I + V+++ + + ID G +Q L+ +E + +I
Sbjct: 251 SDVVQLLMRRCSSEQIVQL-VDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIP 309
Query: 221 LMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVI 280
++ +++ + H I +L P L+L + + D +G ++
Sbjct: 310 RIVDVVRTVALQLSKSNHAIFVILACFRLF--PLHCRLLLELIVQNCHQIAIDQHGCCLL 367
Query: 281 QYCVKHF---SHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXX 337
Q C + E + L+ E N + + G V+Q+ VE + +
Sbjct: 368 QLCFNKDRVPNLEIRQRLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIG 427
Query: 338 XXXXXXXDCYGNYVVQHLLALR-VPQ--ITASLLRQLEGHYVSFSCNKYGSNVVERCLLE 394
+ YG++ VQ LL LR + I LLR+++ + + +G+ V++
Sbjct: 428 NYAHLARNKYGSHAVQKLLKLRWIDSRVIVIDLLREID----TLLLDPFGNYVIQTAWFV 483
Query: 395 SGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQ 427
S ++ + + R N+ M+ + FGN V++
Sbjct: 484 SKDDVRRMLRYHIER--NIPMMRCNKFGNKVLE 514
Score = 42 (19.8 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 28/138 (20%), Positives = 56/138 (40%)
Query: 10 LRDETTRFGSPSRGLP-AAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFSHLNVNDR- 67
+ + T S S+ P ++ F +P + R+ S Y+D L + F L+ ND
Sbjct: 21 VNENLTMASSSSQPQPISSPFHQPENQVNRVNPGS----HYYDLETLESSFGGLSFNDSS 76
Query: 68 IFDNPVH-HFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQ 126
+ N H P N F+ + + +L + +H+ EL + R+
Sbjct: 77 VGQNGDSIHLPRRTNQVFTGSSSGGAG-DDNGYLLPPMGSHHH-------RELEELQRHN 128
Query: 127 WMSSLSLK-RNQWLQDSF 143
+++ L + +N + S+
Sbjct: 129 YLNQLRMSYQNDYAHQSY 146
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 454 (164.9 bits), Expect = 2.9e-42, P = 2.9e-42
Identities = 122/424 (28%), Positives = 206/424 (48%)
Query: 19 SPSRGLPAAHFRRPRQESPRLPN-TSLNEKSYFDETDLSAYFSHLNVNDRIFDNPVHHFP 77
SPS + A +SP PN S N + + ++ + FS++ N+ + +
Sbjct: 337 SPSMPVIAGKLNGESLKSPNKPNLASNNNNNNNNYSNSNISFSNIKPNNGSLSSSANS-- 394
Query: 78 LVENGFFSHPCQEAEPINQD--SSILNLLHNHNF-----DGLRSNGNELSSVPRNQWMSS 130
+ G P IN + SS+ N+ N D + PR S
Sbjct: 395 -ISTGL---PNLSGGKINTNVYSSLGNIGSGMNGSSTKDDSVSPTKKSTDHQPRKPMTKS 450
Query: 131 LSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLP-KEEIEMIFVEVID 189
+S+ C+SL ++ G I L K Q GCR LQ+ + P E + +IF EV D
Sbjct: 451 VSMSSIGLNNQDPKCTSLEEITGQIYHLTKYQAGCRFLQKKLEEKPDSEHVTLIFNEVFD 510
Query: 190 RVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLEN 249
+ ELMIDP+G Y++ +L++ C QR +I+ + + + +GI + KLL+
Sbjct: 511 HLNELMIDPYGQYLIPQLMKYCDNNQRRQIVDKIAPS---VETFACHVYGIHGIQKLLQY 567
Query: 250 LTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
L+ P Q+ ++A+++ + L+KD G+Y+IQ +K FS E +++ + + N I T
Sbjct: 568 LS-PDQVESIIASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEEICTH 626
Query: 310 KSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLR 369
K GC V+ C++ + Q E+ D +GNYVVQHLL+ + ++ L+
Sbjct: 627 KVGCTVVNRCIDNANPEQLEKLVDKITEHSLKLVQDQFGNYVVQHLLS-KNKAYSSKLIV 685
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSA 429
L+ + S K+ SNV+E+CL + + + +II+ L ++ LL + N+VIQ+A
Sbjct: 686 SLKDNIAELSIQKFSSNVIEKCL-QLADTPTYELIIKALTEADILSLLQDKYANFVIQTA 744
Query: 430 LLVS 433
L VS
Sbjct: 745 LDVS 748
Score = 163 (62.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 53/243 (21%), Positives = 104/243 (42%)
Query: 198 PFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQIS 257
P V + L +++ + L +T + L + G R + K LE + + ++
Sbjct: 446 PMTKSVSMSSIGLNNQDPKCTSLEEITGQIYHLTKY---QAGCRFLQKKLEEKPDSEHVT 502
Query: 258 LVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQ 317
L+ + L D G Y+I +K+ + + +++++A + A G +Q
Sbjct: 503 LIFNEVFDHLNELMIDPYGQYLIPQLMKYCDNNQRRQIVDKIAPSVETFACHVYGIHGIQ 562
Query: 318 HCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVS 377
++Y Q E D GNY++Q L P++ + + G+
Sbjct: 563 KLLQYLSPDQVESIIASIKGKVIQLSKDNKGNYLIQSFLKQFSPEVNQFVCDAIMGNIEE 622
Query: 378 FSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRL 437
+K G VV RC+ + EQ +++ ++ + + L+ FGNYV+Q L+SK +
Sbjct: 623 ICTHKVGCTVVNRCIDNANPEQLEKLVDKI--TEHSLKLVQDQFGNYVVQH--LLSKNKA 678
Query: 438 FSS 440
+SS
Sbjct: 679 YSS 681
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 442 (160.7 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 98/301 (32%), Positives = 167/301 (55%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTM--SSLPKEEI-----EMIFVEVIDRVCELMIDPFG 200
L L+ I+ LAKDQYGCR LQ+ + S +P ++ E+IF ++ V EL++DPFG
Sbjct: 279 LTQLKSEILKLAKDQYGCRFLQKKIDESLVPNYQVRLANFEIIFNQIYSHVYELIVDPFG 338
Query: 201 NYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVL 260
NY++QKL+ C+E ++ +L + L +I +N HG RA+ K++++L N Q+ L++
Sbjct: 339 NYLIQKLIVYCNESNLDLLMEIL---QYNLFQISINQHGTRALQKIIDSLNNSHQLGLLI 395
Query: 261 AALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCV 320
L+P + L KD NG++VIQ + + D +++ + + D+ Y +AT K GCCVLQ C+
Sbjct: 396 KGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKCL 455
Query: 321 EYSKGAQRERXXXXXXXXXXXXXX--DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSF 378
+ Q D +GNYV+Q+L+++ I + + +S
Sbjct: 456 NHVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFVNFGISN 515
Query: 379 SCN-KYGSNVVERCLLESGEEQSTRI--------IIELLRSPNVSMLLMHPFGNYVIQSA 429
CN K+ SNVVE+ L +S + +I ++ ++++L+ P+GNYVIQ+
Sbjct: 516 LCNLKFSSNVVEKFLKNCYANESVNVSFSNLKFELIYIILVSDLNVLINDPYGNYVIQTM 575
Query: 430 L 430
+
Sbjct: 576 I 576
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 378 (138.1 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 100/320 (31%), Positives = 166/320 (51%)
Query: 121 SVPRNQWMSSLSLKRNQWLQDSFDCS---SLRDLRGNIVALAKDQYGCRHLQRTMSSLPK 177
S P Q + + R+Q L+D + L D++G+I +KDQ G R +Q+ + +
Sbjct: 428 SSPTQQQTNEYTT-RSQLLEDFRNLKMKLELSDIKGHIAEFSKDQVGSRIIQQKIENASL 486
Query: 178 EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNT 237
EE +++F EV+ V LM D FGNYV+QK E + EQ+ RIL + ++ + L
Sbjct: 487 EEKQLVFDEVVVAVHSLMTDVFGNYVLQKFFEHGTTEQK-RILADKLSG--HILSLTLQM 543
Query: 238 HGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLN 297
+G R + K +E++ +QI L++ L V D NG++VIQ C++ +++++
Sbjct: 544 YGCRVIQKAIESIELDKQI-LLIGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIID 602
Query: 298 EVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLA 357
+ Y +AT GC V+Q +E+ Q D YGNYV+QH+L
Sbjct: 603 SFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLE 662
Query: 358 LRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVS 414
P+ ++++ +L+G + S +K+ SNV+E+C+ + II E+L SPN S
Sbjct: 663 NGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAERILIINEILGDANSPNSS 722
Query: 415 MLLMH----PFGNYVIQSAL 430
+L+ P+ NYVIQ L
Sbjct: 723 NVLLKILKDPYANYVIQKIL 742
Score = 206 (77.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 56/251 (22%), Positives = 122/251 (48%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
L G+I++L YGCR +Q+ + S+ ++ ++ E+ + + + D GN+V+QK
Sbjct: 532 LSGHILSLTLQMYGCRVIQKAIESIELDKQILLIGELNGHIVQCVTDQNGNHVIQK---- 587
Query: 211 CSEEQRTRILLMLTNDDFQ--LVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C E+ T ++ + D F + ++ + +G R + ++LE+ +Q++ +L L AV
Sbjct: 588 CIEKIPTHLIQFII-DSFHGHIYQLATHPYGCRVIQRILEHCAE-KQVAPILDELMRCAV 645
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
+L +D G+YVIQ+ +++ + D ++ ++ Y ++ K V++ CV++ A+R
Sbjct: 646 SLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHGCTAER 705
Query: 329 ---------ERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+ D Y NYV+Q +L + P ++ +++ +
Sbjct: 706 ILIINEILGDANSPNSSNVLLKILKDPYANYVIQKILDIVEPAQRDMIINRIQPFVPTLK 765
Query: 380 CNKYGSNVVER 390
G +++ R
Sbjct: 766 KVTPGKHIISR 776
Score = 47 (21.6 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 93 PINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLS 132
P++ + + N +N NF+ +NGN L V NQ +S S
Sbjct: 315 PLSASTVVANN-NNGNFND-SANGNGLKPVEINQTLSPSS 352
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 364 (133.2 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 84/288 (29%), Positives = 144/288 (50%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G+++ + DQYG R +Q+ + + EE IF E++ LM D FGNYV+QK
Sbjct: 662 LSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKF 721
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + +QR + +T ++ + L +G R + K LE + QQ +V L
Sbjct: 722 FEHGTTKQRKELAEQVTG---HVLALSLQMYGCRVIQKALEVVELEQQARMV-KELDGSV 777
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ D NG++VIQ C++ + +++++ ++T GC V+Q +E+ +
Sbjct: 778 MKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIE 837
Query: 328 RERXXXXXXXXXX-XXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+R D YGNYV+QH++ P + ++ +L G V S K+ SN
Sbjct: 838 TQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASN 897
Query: 387 VVERCLLESGEEQSTRIIIELL----RSPNVSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + ++ PFGNYV+Q L
Sbjct: 898 VVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL 945
Score = 221 (82.9 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 57/255 (22%), Positives = 126/255 (49%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
G+++AL+ YGCR +Q+ + + E+ + E+ V + + D GN+V+QK +E
Sbjct: 739 GHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLP 798
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
++ I ++++ +++ + + +G R + ++LE++ + + +++ + TL +
Sbjct: 799 QDW---IQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQ 855
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXX 332
D G+YVIQ+ ++H + ++N++A ++ K V++ C+ + +R+
Sbjct: 856 DQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLV 915
Query: 333 XXXXXXXX------XXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
D +GNYVVQ +L Q A +L +++ H + YG +
Sbjct: 916 NEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKH 975
Query: 387 VVERC--LLESGEEQ 399
+V R L+ +GE +
Sbjct: 976 IVARVEKLITTGERR 990
Score = 169 (64.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 57/277 (20%), Positives = 131/277 (47%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
L D +G +Q+ ++ + + +V V L + +G V+QK +E+ EQ+
Sbjct: 708 LMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQA 767
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPGAVTLTKDTNG 276
R++ L D +++ + +G + K +E L PQ I ++++ + L+ G
Sbjct: 768 RMVKEL---DGSVMKCVHDQNGNHVIQKCIERL--PQDWIQFIISSFYGKVLALSTHPYG 822
Query: 277 HYVIQYCVKHFSHEDT-KYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXX 335
VIQ ++H +T + ++ E+ D+ +A D+ G V+QH +++ K +R
Sbjct: 823 CRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKL 882
Query: 336 XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGH------YVSFSCNKYGSNVVE 389
+ + VV+ L P+ L+ ++ G+ + + +G+ VV+
Sbjct: 883 AGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQ 942
Query: 390 RCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVI 426
+ +LE+ ++QS +I+ ++ +++ L + +G +++
Sbjct: 943 K-VLETCDDQSLALILSRIKV-HLNALKRYTYGKHIV 977
Score = 129 (50.5 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 46/192 (23%), Positives = 81/192 (42%)
Query: 239 GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNE 298
G A LLE N + SL L+ + + + D G IQ ++ + E+ + E
Sbjct: 641 GSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPE 700
Query: 299 VADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLAL 358
+ + TD G V+Q E+ QR+ YG V+Q L +
Sbjct: 701 ILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEV 760
Query: 359 RVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLM 418
+ A ++++L+G + ++ G++V+++C+ E + + II V L
Sbjct: 761 VELEQQARMVKELDGSVMKCVHDQNGNHVIQKCI-ERLPQDWIQFIISSFYG-KVLALST 818
Query: 419 HPFGNYVIQSAL 430
HP+G VIQ L
Sbjct: 819 HPYGCRVIQRVL 830
Score = 41 (19.5 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 2 LNSPGNRHLRDETTRFG-SPSRGLPAAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFS 60
++SP R+ ++ G S + GLP R E T++ + D++ S
Sbjct: 296 MSSPVPRNRTPDSHLVGRSTASGLPPIGTRVGPVEKKNTFGTAIQNCESYTAADVADTLS 355
Query: 61 HLNVND 66
LN+++
Sbjct: 356 RLNMSE 361
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 113 RSNGNELSSVPRNQWMSSLSLK-RNQ 137
R N +E+S V N S L ++ NQ
Sbjct: 356 RLNMSEMSQVKENHMQSQLQVELENQ 381
>WB|WBGene00004245 [details] [associations]
symbol:puf-9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040017 "positive regulation of locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0002009 GO:GO:0005737 GO:GO:0040010 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0040017 GO:GO:0003730 GO:GO:0006402 EMBL:FO081143
eggNOG:COG5099 HSSP:Q14671 GeneTree:ENSGT00680000100664 PIR:T26218
RefSeq:NP_508980.2 ProteinModelPortal:Q23191 SMR:Q23191
STRING:Q23191 PaxDb:Q23191 EnsemblMetazoa:W06B11.2.1
EnsemblMetazoa:W06B11.2.2 GeneID:180850 KEGG:cel:CELE_W06B11.2
UCSC:W06B11.2 CTD:180850 WormBase:W06B11.2 HOGENOM:HOG000020400
InParanoid:Q23191 OMA:TIKPHIA NextBio:911254 Uniprot:Q23191
Length = 703
Score = 368 (134.6 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 84/297 (28%), Positives = 151/297 (50%)
Query: 147 SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQK 206
+L+D++ N++ AKDQ+G R +Q+ + + IF V++ ELM D FGNYV+QK
Sbjct: 339 TLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNYVIQK 398
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
E + EQR +++ + + ++++ L +G R + K LE + Q +L +
Sbjct: 399 FFEFGNNEQRNQLVGTIRGN---VMKLALQMYGCRVIQKALEYVEEKYQHE-ILGEMEGQ 454
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEV----ADNCYGIATDKSGCCVLQHCVEY 322
+ KD NG++VIQ ++ E +++++ +DN Y ++ GC V+Q +EY
Sbjct: 455 VLKCVKDQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEY 514
Query: 323 SKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ-LEGHYVSFSCN 381
Q++ D YGNYV+QH++ P +++ + + F+ +
Sbjct: 515 CNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQH 574
Query: 382 KYGSNVVERCLLESGEEQSTRIIIELLRSPN-----VSMLLMHPFGNYVIQSALLVS 433
K+ SNV+E+CL G + II ++ PN + ++ PF NYV+Q L V+
Sbjct: 575 KFASNVIEKCLTFGGHAERNLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVA 631
Score = 223 (83.6 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 63/247 (25%), Positives = 119/247 (48%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RGN++ LA YGCR +Q+ + + ++ I E+ +V + + D GN+V+QK++E
Sbjct: 415 IRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQNGNHVIQKVIER 474
Query: 211 CSEEQRTRILLMLT-NDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVT 269
E+ I+ T N+ + + ++ +G R + ++LE N +Q VL AL+
Sbjct: 475 VEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLE-YCNEEQKQPVLDALQIHLKQ 533
Query: 270 LTKDTNGHYVIQYCVKHFSHEDTKYLLNEV-ADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L D G+YVIQ+ ++H S D + ++ +V +D+ A K V++ C+ + A+R
Sbjct: 534 LVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVIEKCLTFGGHAER 593
Query: 329 ERXXXXXXXX-------XXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D + NYVVQ +L + PQ + ++ H +
Sbjct: 594 NLIIDKVCGDPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLTIKPHIATLRKY 653
Query: 382 KYGSNVV 388
+G +++
Sbjct: 654 NFGKHIL 660
Score = 142 (55.0 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 66/319 (20%), Positives = 134/319 (42%)
Query: 3 NSPGNRHLRDETTR--FGSPSR-----GLPAAHFRRP-RQESPRLPNTSLNEKSYFDETD 54
N GN + ++ ++ FG P + GLP + P R+ P PN K+ D +
Sbjct: 287 NGMGNGGVMNDWSQRSFGMPQQQAQQNGLPPNFSQNPPRRRGPEDPNGQ-TPKTLQDIKN 345
Query: 55 LSAYFSHLNVNDRIFDNPVHHFPLVENG-FFSHPCQEAEPINQDSSILNLLHNHNFD-GL 112
F+ R + L + F+ + AE + D N + F+ G
Sbjct: 346 NVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDV-FGNYVIQKFFEFGN 404
Query: 113 RSNGNELSSVPRNQWMS-SLSL-------KRNQWLQDSFDCSSLRDLRGNIVALAKDQYG 164
N+L R M +L + K +++++ + L ++ G ++ KDQ G
Sbjct: 405 NEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQVLKCVKDQNG 464
Query: 165 CRHLQRTMSSLPKEEIEMI---FVEV-IDRVCELMIDPFGNYVVQKLVELCSEEQRTRIL 220
+Q+ + + E ++ I F + D V L + P+G V+Q+++E C+EEQ+ +L
Sbjct: 465 NHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEYCNEEQKQPVL 524
Query: 221 LMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVI 280
L L ++ L+ +G + ++E+ + + +V + + + VI
Sbjct: 525 DAL---QIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFAQHKFASNVI 581
Query: 281 QYCVKHFSHEDTKYLLNEV 299
+ C+ H + ++++V
Sbjct: 582 EKCLTFGGHAERNLIIDKV 600
Score = 142 (55.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 44/179 (24%), Positives = 76/179 (42%)
Query: 255 QISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCC 314
Q L ++ + KD +G IQ ++ S D + V +N + TD G
Sbjct: 335 QTPKTLQDIKNNVIEFAKDQHGSRFIQQKLERASLRDKAAIFTPVLENAEELMTDVFGNY 394
Query: 315 VLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGH 374
V+Q E+ QR + YG V+Q L + +L ++EG
Sbjct: 395 VIQKFFEFGNNEQRNQLVGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEMEGQ 454
Query: 375 YVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLMHPFGNYVIQSAL 430
+ ++ G++V+++ ++E E + + II+ S NV L +HP+G VIQ L
Sbjct: 455 VLKCVKDQNGNHVIQK-VIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVL 512
Score = 42 (19.8 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 40 PNTSLNEKSYFDETDLSAYFSHLNVND-RIFDNPVHHFPL 78
P++S+ +++YF T S + ND +I N + P+
Sbjct: 63 PSSSVQQRNYFTTTPFPISRSPNDRNDDKIMGNGSYGVPI 102
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 362 (132.5 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 86/305 (28%), Positives = 157/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 712 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 771
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 772 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 828
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
++ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 829 SSDQQSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 887
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 888 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 947
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 948 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 1007
Query: 426 IQSAL 430
+Q +
Sbjct: 1008 VQKMI 1012
Score = 238 (88.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 63/249 (25%), Positives = 119/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG+++ LA YGCR +Q+ + S+ ++ + E+ V + + D GN+VVQK +E
Sbjct: 804 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE- 862
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 863 CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTE 917
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+R
Sbjct: 918 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 977
Query: 329 ERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 978 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHISTLRKY 1037
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1038 TYGKHILAK 1046
Score = 159 (61.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 61/293 (20%), Positives = 131/293 (44%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
L D +G +Q+ ++ + + V L + +G V+QK +E S +Q++
Sbjct: 775 LMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQS 834
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
++ L D +++ + +G V K +E PQ + ++ A + L+ G
Sbjct: 835 EMVKEL---DGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYGC 890
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXX 337
VIQ ++H + E T +L E+ + + D+ G V+QH +E+ + + +
Sbjct: 891 RVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 950
Query: 338 XXXXXXXDCYGNYVVQHLL--ALRVPQ--ITASLLRQLEG-HYVSFSCNK--YGSNVVER 390
+ + VV+ + A R + + + Q +G H ++ K Y + VV++
Sbjct: 951 KVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQK 1010
Query: 391 CLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSSPPI 443
+++ E +II+ +R P++S L + +G +++ + K L +SP +
Sbjct: 1011 -MIDMAEPAQRKIIMHKIR-PHISTLRKYTYGKHILAK---LEKYYLKNSPDL 1058
Score = 52 (23.4 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 32 PRQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
P+Q+ + P+T+L S++ T L S+ FSH
Sbjct: 511 PQQQQQQQPSTNLQSNSFYGSTSLTNSSQSSSLFSH 546
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 363 (132.8 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 85/306 (27%), Positives = 158/306 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 545 RSRLLEDFRNNRFPNLQLRDLMGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEIVQA 604
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ + + ++ + L +G R + K LE++
Sbjct: 605 AYQLMTDVFGNYVIQKFFEFGSLDQKLALANRIRG---HVLPLALQMYGCRVIQKALESI 661
Query: 251 TNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
++ QQ IS ++ L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 662 SSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH 721
Query: 310 KSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLR 369
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++
Sbjct: 722 PYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 781
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNY 424
++ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NY
Sbjct: 782 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 841
Query: 425 VIQSAL 430
V+Q +
Sbjct: 842 VVQKMI 847
Score = 236 (88.1 bits), Expect = 6.6e-17, Sum P(2) = 6.6e-17
Identities = 64/251 (25%), Positives = 120/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG+++ LA YGCR +Q+ + S+ ++ I + E+ V + + D GN+VVQK +
Sbjct: 637 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 696
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 697 E-CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQH 750
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A
Sbjct: 751 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 810
Query: 327 QRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 811 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLR 870
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 871 KYTYGKHILAK 881
Score = 48 (22.0 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 32 PRQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
P+Q+ + P+T+L S++ + L S+ FSH
Sbjct: 344 PQQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSH 379
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 365 (133.5 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 87/306 (28%), Positives = 159/306 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 707 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 766
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 767 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 823
Query: 251 TNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
++ QQ IS ++ L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 824 SSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH 883
Query: 310 KSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLR 369
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++
Sbjct: 884 PYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNY 424
++ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 425 VIQSAL 430
V+Q +
Sbjct: 1004 VVQKMI 1009
Score = 236 (88.1 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 64/251 (25%), Positives = 120/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG+++ LA YGCR +Q+ + S+ ++ I + E+ V + + D GN+VVQK +
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 858
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 859 E-CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQH 912
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A
Sbjct: 913 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 972
Query: 327 QRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 973 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLR 1032
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1033 KYTYGKHILAK 1043
Score = 46 (21.3 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 31 RPRQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
+P Q+ + P+T+L S++ + L S+ FSH
Sbjct: 505 QPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSH 541
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 362 (132.5 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 86/305 (28%), Positives = 157/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 651 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 710
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 711 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 767
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
++ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 768 SSDQQSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 826
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 827 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 886
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 887 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 946
Query: 426 IQSAL 430
+Q +
Sbjct: 947 VQKMI 951
Score = 240 (89.5 bits), Expect = 5.0e-17, Sum P(2) = 5.0e-17
Identities = 63/249 (25%), Positives = 119/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG+++ LA YGCR +Q+ + S+ ++ + E+ V + + D GN+VVQK +E
Sbjct: 743 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE- 801
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 802 CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTE 856
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+R
Sbjct: 857 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 916
Query: 329 ERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 917 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKY 976
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 977 TYGKHILAK 985
Score = 46 (21.3 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 31 RPRQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
+P Q+ + P+T+L S++ + L S+ FSH
Sbjct: 449 QPPQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSH 485
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 362 (132.5 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 86/305 (28%), Positives = 157/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 706 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 765
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 766 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 822
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
++ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 823 SSDQQSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 881
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 882 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 941
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 942 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 1001
Query: 426 IQSAL 430
+Q +
Sbjct: 1002 VQKMI 1006
Score = 240 (89.5 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 63/249 (25%), Positives = 119/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG+++ LA YGCR +Q+ + S+ ++ + E+ V + + D GN+VVQK +E
Sbjct: 798 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE- 856
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 857 CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTE 911
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+R
Sbjct: 912 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 971
Query: 329 ERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 972 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKY 1031
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1032 TYGKHILAK 1040
Score = 44 (20.5 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 33 RQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
+Q+ + P+T+L S++ T L S+ FSH
Sbjct: 506 QQQQQQPPSTNLQSNSFYGSTSLTSSSQSSSLFSH 540
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 362 (132.5 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 86/305 (28%), Positives = 157/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 707 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 766
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 767 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 823
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
++ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 824 SSDQQSEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 882
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 883 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 942
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 943 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 1002
Query: 426 IQSAL 430
+Q +
Sbjct: 1003 VQKMI 1007
Score = 240 (89.5 bits), Expect = 9.4e-17, Sum P(2) = 9.4e-17
Identities = 63/249 (25%), Positives = 119/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG+++ LA YGCR +Q+ + S+ ++ + E+ V + + D GN+VVQK +E
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIE- 857
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 858 CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHTE 912
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+R
Sbjct: 913 QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAER 972
Query: 329 ERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 973 ALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKY 1032
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1033 TYGKHILAK 1041
Score = 44 (20.5 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 31 RPRQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
+P + + P+T+L S++ T L S+ FSH
Sbjct: 505 QPPPQQQQQPSTNLQSNSFYGSTSLTNSSQSSSLFSH 541
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 361 (132.1 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 86/306 (28%), Positives = 159/306 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +++F E++
Sbjct: 707 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQA 766
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 767 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 823
Query: 251 TNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
++ QQ IS ++ L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 824 SSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH 883
Query: 310 KSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLR 369
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++
Sbjct: 884 PYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNY 424
++ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 425 VIQSAL 430
V+Q +
Sbjct: 1004 VVQKMI 1009
Score = 236 (88.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 64/251 (25%), Positives = 120/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG+++ LA YGCR +Q+ + S+ ++ I + E+ V + + D GN+VVQK +
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 858
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 859 E-CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQH 912
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A
Sbjct: 913 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 972
Query: 327 QRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 973 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLR 1032
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1033 KYTYGKHILAK 1043
Score = 41 (19.5 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 33 RQESPRLPNTSLNEKSYFDETDL------SAYFSH 61
+Q+ + P+T+L S++ + L S+ FSH
Sbjct: 507 QQQQQQQPSTNLQSNSFYGSSSLTNSSQSSSLFSH 541
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 358 (131.1 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 86/305 (28%), Positives = 156/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 704 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 763
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 764 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 820
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
+ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 821 SPDQQNEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 879
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 880 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 939
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 940 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 999
Query: 426 IQSAL 430
+Q +
Sbjct: 1000 VQKMI 1004
Score = 244 (91.0 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 66/250 (26%), Positives = 122/250 (48%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSL-PKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVE 209
+RG+++ LA YGCR +Q+ + S+ P ++ EM+ E+ V + + D GN+VVQK +E
Sbjct: 796 IRGHVLPLALQMYGCRVIQKALESISPDQQNEMV-KELDGHVLKCVKDQNGNHVVQKCIE 854
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGA 267
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 855 -CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHT 908
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+
Sbjct: 909 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 968
Query: 328 RERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSC 380
R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 969 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1028
Query: 381 NKYGSNVVER 390
YG +++ +
Sbjct: 1029 YTYGKHILAK 1038
Score = 43 (20.2 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 71 NPVHHFPLVENGFFSHP 87
NP H PLVE FS+P
Sbjct: 205 NPTAHKPLVEE--FSNP 219
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 358 (131.1 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 86/305 (28%), Positives = 156/305 (51%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 705 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 764
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 765 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 821
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDK 310
+ QQ +V L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 822 SPDQQNEMV-KELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHP 880
Query: 311 SGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQ 370
GC V+Q +E+ Q D YGNYV+QH+L P+ + ++ +
Sbjct: 881 YGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSE 940
Query: 371 LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNYV 425
+ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NYV
Sbjct: 941 IRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYV 1000
Query: 426 IQSAL 430
+Q +
Sbjct: 1001 VQKMI 1005
Score = 244 (91.0 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 66/250 (26%), Positives = 122/250 (48%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSL-PKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVE 209
+RG+++ LA YGCR +Q+ + S+ P ++ EM+ E+ V + + D GN+VVQK +E
Sbjct: 797 IRGHVLPLALQMYGCRVIQKALESISPDQQNEMV-KELDGHVLKCVKDQNGNHVVQKCIE 855
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGA 267
C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 856 -CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQHT 909
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A+
Sbjct: 910 EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAE 969
Query: 328 RERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSC 380
R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 970 RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRK 1029
Query: 381 NKYGSNVVER 390
YG +++ +
Sbjct: 1030 YTYGKHILAK 1039
Score = 43 (20.2 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 71 NPVHHFPLVENGFFSHP 87
NP H PLVE FS+P
Sbjct: 205 NPTAHKPLVEE--FSNP 219
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 355 (130.0 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 93/311 (29%), Positives = 152/311 (48%)
Query: 133 LKRNQWLQDSFDCSS----LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI 188
LKR+ +L + ++ L D+ G +V + DQ+G R +Q+ + EE +F EV+
Sbjct: 607 LKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVL 666
Query: 189 DRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLE 248
+ +LM D FGNYV+QK +E + QR ++ L Q+V + L +G R + K LE
Sbjct: 667 PQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAG---QMVSLSLQMYGCRVIQKALE 723
Query: 249 NLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIAT 308
+ Q+ L+ L + +D NG++VIQ C++ +++ ++T
Sbjct: 724 VIDVDQKTELI-RELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLST 782
Query: 309 DKSGCCVLQHCVEY-SKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASL 367
GC V+Q +E+ S + D YGNYV QH+L P +
Sbjct: 783 HPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQI 842
Query: 368 LRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL-RSPNVSMLLM---HPFGN 423
+ +L G+ V S +KY SNVVE+CL + + +I E++ +S + LL F N
Sbjct: 843 IEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFAN 902
Query: 424 YVIQSALLVSK 434
YV+Q L +SK
Sbjct: 903 YVVQKVLEISK 913
Score = 216 (81.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 57/257 (22%), Positives = 121/257 (47%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
++ L G +V+L+ YGCR +Q+ + + ++ + E+ V + + D GN+V+QK
Sbjct: 698 VKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKC 757
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
+E RI ++ Q+ + + +G R + ++LE+ ++ ++ ++ + A
Sbjct: 758 IE---SMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESA 814
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
L D G+YV Q+ ++ ++ + ++ ++ N ++ K V++ C+E++ +
Sbjct: 815 FALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTE 874
Query: 328 RE------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
RE D + NYVVQ +L + Q L+++++ H S
Sbjct: 875 REFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKY 934
Query: 382 KYGSNVVERCLLESGEE 398
YG ++V R GEE
Sbjct: 935 TYGKHIVARFEQLFGEE 951
Score = 39 (18.8 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 36 SPRLPNTSLNEKSYFDETDLSAYFSHLNVNDRI 68
S + N E+ D ++ Y S++N+N R+
Sbjct: 90 SRAIENYDSEEEIRSDPAYVAYYLSNINLNPRL 122
Score = 38 (18.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 34 QESPRLPNTSLNEKSYFDETD 54
+ + RLP + +N + ETD
Sbjct: 235 EHARRLPESDINSVNLLRETD 255
>SGD|S000003936 [details] [associations]
symbol:PUF3 "Protein of the mitochondrial outer surface"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=IDA] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0032473
"external side of mitochondrial outer membrane" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0051646
"mitochondrion localization" evidence=IMP] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IMP] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0016020 "membrane" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SGD:S000003936 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005741 GO:GO:0003729
EMBL:BK006945 GO:GO:0009060 GO:GO:0007005 GO:GO:0008298
GO:GO:0000288 EMBL:X97560 EMBL:X91488 GO:GO:0051646 eggNOG:COG5099
GO:GO:0032473 OrthoDB:EOG4RR9RJ EMBL:Z73117 EMBL:Z73118 PIR:S64755
RefSeq:NP_013088.1 PDB:3K49 PDB:3K4E PDBsum:3K49 PDBsum:3K4E
ProteinModelPortal:Q07807 SMR:Q07807 DIP:DIP-4449N IntAct:Q07807
MINT:MINT-552454 STRING:Q07807 PaxDb:Q07807 PeptideAtlas:Q07807
EnsemblFungi:YLL013C GeneID:850647 KEGG:sce:YLL013C CYGD:YLL013c
GeneTree:ENSGT00680000100664 OMA:FIPYLIQ EvolutionaryTrace:Q07807
NextBio:966590 Genevestigator:Q07807 GermOnline:YLL013C
Uniprot:Q07807
Length = 879
Score = 363 (132.8 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 103/359 (28%), Positives = 179/359 (49%)
Query: 95 NQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGN 154
N+ ++ + H+H+ +S + + R+ + L + ++S SL+D+ G+
Sbjct: 485 NESTANNHKSHSHSHPHSQSLQQQQQTYHRSPLLEQLRNSSSD--KNSNSNMSLKDIFGH 542
Query: 155 IVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEE 214
+ KDQ+G R +QR +++ P E E+IF E+ D EL D FGNYV+QK E S+
Sbjct: 543 SLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKI 602
Query: 215 QRTRILLMLTNDDFQ--LVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
Q+ ++ D F+ + ++ L + R + K LE + + Q+I LVL L + + K
Sbjct: 603 QKNTLV-----DQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLE-LSDSVLQMIK 656
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXX 332
D NG++VIQ ++ E ++L+ + + Y ++T GC V+Q +E+ +E
Sbjct: 657 DQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESIL 716
Query: 333 XXXXXXXXXXXXDCYGNYVVQHLLAL------RVPQITASLLRQLEGHYVSFSCNKYGSN 386
D YGNYV+Q++L + I ++ + + V +S +K+ SN
Sbjct: 717 NELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASN 776
Query: 387 VVERCLLESGEEQSTRIIIELL-RSPNVS--------MLLM--HPFGNYVIQSALLVSK 434
VVE+ +L + Q II ++L R N + M+LM F NYVIQ + VS+
Sbjct: 777 VVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSE 835
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 345 (126.5 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 702 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 761
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 762 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 818
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 819 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 878
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 879 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 938
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 939 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 991
Score = 231 (86.4 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 777 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 836
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 837 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 890
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 891 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 950
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 951 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1010
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1011 KYTYGKHILAK 1021
Score = 161 (61.7 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 687 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 746
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 747 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 805
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 806 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 863
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 864 GCRVIQRIL 872
Score = 46 (21.3 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 106 NHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLR 152
NH+F L G + PR+ S + K + + +FD L DL+
Sbjct: 129 NHDFQALALEGRAMGEGPRDA-DSDENDKGEKKNKGTFDGDKLGDLK 174
Score = 39 (18.8 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 482 QQPQPQPQQQPNNNLASSSFYGNNSLNS 509
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 344 (126.2 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 664 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 719
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 720 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 779
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 780 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 839
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 840 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 891
Score = 235 (87.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 737
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 738 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 792
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 793 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 852
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 912
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 913 TYGKHILAK 921
Score = 156 (60.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 589 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 648
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 649 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 708
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 709 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 766
Query: 425 VIQSAL 430
VIQ L
Sbjct: 767 VIQRIL 772
Score = 44 (20.5 bits), Expect = 5.2e-32, Sum P(2) = 5.2e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
Score = 39 (18.8 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 384 QQPQPQPQQQPNNNLASSSFYGNNSLNS 411
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 344 (126.2 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 787 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 846
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 847 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 902
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 903 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 962
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 963 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1022
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1023 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1074
Score = 235 (87.8 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 862 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 920
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 921 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 975
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 976 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1035
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1036 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1095
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1096 TYGKHILAK 1104
Score = 156 (60.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 772 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 831
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 832 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 891
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 892 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 949
Query: 425 VIQSAL 430
VIQ L
Sbjct: 950 VIQRIL 955
Score = 46 (21.3 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 106 NHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLR 152
NH+F L G + PR+ S + K + + +FD L DL+
Sbjct: 165 NHDFQALALEGRAMGEGPRDA-DSDENDKGEKKNKGTFDGDKLGDLK 210
Score = 39 (18.8 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 567 QQPQPQPQQQPNNNLASSSFYGNNSLNS 594
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 363 (132.8 bits), Expect = 7.9e-32, P = 7.9e-32
Identities = 85/289 (29%), Positives = 147/289 (50%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LRDL +IV ++DQ+G R +Q+ + E +M+F E++ LM D FGNYV+QK
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKF 1168
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + EQ+ + + + QL L +G R + K LE+++ P+Q ++ L
Sbjct: 1169 FEFGTPEQKNTLGMQVKGHVLQLA---LQMYGCRVIQKALESIS-PEQQQEIVHELDGHV 1224
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ ++++N Y ++T GC V+Q +E+ Q
Sbjct: 1225 LKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQ 1284
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L + + L+ + G + S +K+ SNV
Sbjct: 1285 TTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNV 1344
Query: 388 VERCLLESGEEQSTRIIIELLR-SPNVSMLLMHP-FGNYVIQSALLVSK 434
VE+C+ + + T +I E+ + N ++M + NYV+Q + VS+
Sbjct: 1345 VEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSE 1393
Score = 239 (89.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 61/241 (25%), Positives = 115/241 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
++G+++ LA YGCR +Q+ + S+ E+ + I E+ V + + D GN+VVQK +E
Sbjct: 1184 VKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIE- 1242
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
C + + ++ Q+ + + +G R + ++LE+ T +Q + +L L L
Sbjct: 1243 CVDPVALQFIINAFKG--QVYSLSTHPYGCRVIQRILEHCT-AEQTTPILDELHEHTEQL 1299
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR-- 328
+D G+YVIQ+ ++H ED L+N V ++ K V++ CV ++ +R
Sbjct: 1300 IQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGERTG 1359
Query: 329 --ERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ D Y NYVVQ ++ + P L+ ++ H + YG +
Sbjct: 1360 LIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYGKH 1419
Query: 387 V 387
+
Sbjct: 1420 I 1420
Score = 155 (59.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L L V ++D +G IQ ++ + + + + +E+ Y
Sbjct: 1094 RLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAY 1153
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ TD G V+Q E+ Q+ YG V+Q L P+
Sbjct: 1154 SLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQ 1213
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++ +L+GH + ++ G++VV++C+ E + + + II + V L HP+G
Sbjct: 1214 QEIVHELDGHVLKCVKDQNGNHVVQKCI-ECVDPVALQFIINAFKG-QVYSLSTHPYGCR 1271
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1272 VIQRIL 1277
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 345 (126.5 bits), Expect = 8.6e-32, Sum P(2) = 8.6e-32
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 820 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 879
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 880 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 936
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 937 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 996
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 997 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1056
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1057 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1109
Score = 232 (86.7 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 895 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 954
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 955 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1008
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1009 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1068
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1069 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLR 1128
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1129 KYTYGKHILAK 1139
Score = 161 (61.7 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 805 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 864
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 865 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 923
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 924 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 981
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 982 GCRVIQRIL 990
Score = 44 (20.5 bits), Expect = 8.6e-32, Sum P(2) = 8.6e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 345 (126.5 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 906 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 962
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 963 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1022
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1023 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1082
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1083 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1135
Score = 231 (86.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 980
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 981 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1034
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1035 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1094
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1095 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1154
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1155 KYTYGKHILAK 1165
Score = 161 (61.7 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 949
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 950 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 1007
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1008 GCRVIQRIL 1016
Score = 44 (20.5 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
Score = 39 (18.8 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 626 QQPQPQPQQQPNNNLASSSFYGNNSLNS 653
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 345 (126.5 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 907 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 963
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 964 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1023
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1024 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1083
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1084 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1136
Score = 231 (86.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 982 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1035
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1036 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1095
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1096 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1155
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1156 KYTYGKHILAK 1166
Score = 161 (61.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 891
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 950
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 1008
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1009 GCRVIQRIL 1017
Score = 44 (20.5 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
Score = 39 (18.8 bits), Expect = 3.1e-31, Sum P(2) = 3.1e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 627 QQPQPQPQQQPNNNLASSSFYGNNSLNS 654
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 345 (126.5 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 78/293 (26%), Positives = 151/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + QQ I+ ++ L
Sbjct: 907 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGH 963
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 964 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPE 1023
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1024 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1083
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1084 VVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1136
Score = 234 (87.4 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 64/251 (25%), Positives = 120/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P+Q +L L
Sbjct: 982 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PEQTLPILEELHQH 1035
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1036 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1095
Query: 327 QRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1096 ERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLR 1155
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1156 KYTYGKHILAK 1166
Score = 164 (62.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 48/188 (25%), Positives = 87/188 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 891
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--Q 362
+ D G V+Q E+ Q+ YG V+Q L P Q
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ 951
Query: 363 ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFG 422
+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 952 VINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYG 1009
Query: 423 NYVIQSAL 430
VIQ L
Sbjct: 1010 CRVIQRIL 1017
Score = 44 (20.5 bits), Expect = 9.3e-32, Sum P(2) = 9.3e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 344 (126.2 bits), Expect = 9.8e-32, Sum P(2) = 9.8e-32
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 785 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 844
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 845 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 900
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 901 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 960
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 961 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1020
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1021 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1072
Score = 235 (87.8 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 860 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 918
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 919 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 973
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 974 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1033
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1034 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1093
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1094 TYGKHILAK 1102
Score = 156 (60.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 770 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 829
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 830 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 889
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 890 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 947
Query: 425 VIQSAL 430
VIQ L
Sbjct: 948 VIQRIL 953
Score = 44 (20.5 bits), Expect = 9.8e-32, Sum P(2) = 9.8e-32
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 120 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 154
Score = 39 (18.8 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 644 QQPQPQPQQQPNNNLASSSFYGNNSLNS 671
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 345 (126.5 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 942 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 998
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 999 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1058
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1059 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1118
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1119 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1171
Score = 231 (86.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 1016
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 1017 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1070
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1071 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1130
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1131 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1190
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1191 KYTYGKHILAK 1201
Score = 161 (61.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 867 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 926
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 927 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 985
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 986 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 1043
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1044 GCRVIQRIL 1052
Score = 44 (20.5 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 139 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 173
Score = 39 (18.8 bits), Expect = 3.4e-31, Sum P(2) = 3.4e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 662 QQPQPQPQQQPNNNLASSSFYGNNSLNS 689
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 345 (126.5 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 882 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 941
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 942 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 998
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 999 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1058
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1059 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1118
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1119 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1171
Score = 232 (86.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 957 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 1016
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 1017 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1070
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1071 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1130
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1131 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLR 1190
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1191 KYTYGKHILAK 1201
Score = 161 (61.7 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 867 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 926
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 927 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 985
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 986 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 1043
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1044 GCRVIQRIL 1052
Score = 44 (20.5 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 139 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 173
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 347 (127.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 664 FEFGSHEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 719
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 720 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 779
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 780 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 839
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 840 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 891
Score = 235 (87.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 679 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 737
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 738 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 792
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 793 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 852
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 853 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 912
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 913 TYGKHILAK 921
Score = 158 (60.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 589 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY 648
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 649 QLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 708
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 709 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 766
Query: 425 VIQSAL 430
VIQ L
Sbjct: 767 VIQRIL 772
Score = 38 (18.4 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++ H +P +N H + + +N D L L
Sbjct: 103 YNTSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 345 (126.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 558 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 617
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 618 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 674
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 675 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 734
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 735 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 794
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 795 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 847
Score = 231 (86.4 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 633 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 692
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 693 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 746
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 747 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 806
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 807 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 866
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 867 KYTYGKHILAK 877
Score = 161 (61.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 543 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 602
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 603 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 661
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 662 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 719
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 720 GCRVIQRIL 728
Score = 39 (18.8 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 338 QQPQPQPQQQPNNNLASSSFYGNNSLNS 365
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 344 (126.2 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 906 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 961
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 962 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1133
Score = 235 (87.8 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 979
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 980 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 1034
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 1035 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1094
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKY 1154
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1155 TYGKHILAK 1163
Score = 156 (60.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 1008
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1009 VIQRIL 1014
Score = 44 (20.5 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
Score = 39 (18.8 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 30 RRPRQESPRLPNTSLNEKSYFDETDLSA 57
++P+ + + PN +L S++ L++
Sbjct: 626 QQPQPQPQQQPNNNLASSSFYGNNSLNS 653
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 344 (126.2 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 906 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 961
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 962 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1133
Score = 236 (88.1 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 921 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 979
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 980 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 1034
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 1035 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 1094
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1095 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKY 1154
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 1155 TYGKHILAK 1163
Score = 156 (60.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 1008
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1009 VIQRIL 1014
Score = 44 (20.5 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++N H +P +N H + + +N D L L
Sbjct: 103 YNNSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 357 (130.7 bits), Expect = 1.2e-31, P = 1.2e-31
Identities = 88/286 (30%), Positives = 141/286 (49%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L D+ G+IV + DQ+G R +Q+ + + EE +F E++ C+LM D FGNYV+QK
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + QR + L Q+V + L +G R + K L+ + Q++ L L
Sbjct: 590 FEYGNSTQRKELADQLMG---QIVPLSLQMYGCRVIQKALDVIEPDQRVRLA-RELDGQV 645
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY-SKGA 326
+ +D NG++VIQ C+++ + ++L ++ GC V+Q +E S
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV QH+L + + R+L GH V S +K+ SN
Sbjct: 706 QCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASN 765
Query: 387 VVERCLLESGEEQSTRIIIELLRSPNVS-----MLLMHPFGNYVIQ 427
V+E+CL E G +II+ + P+ S M++ +GNYV+Q
Sbjct: 766 VIEKCL-EYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQ 810
Score = 206 (77.6 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 59/254 (23%), Positives = 114/254 (44%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
L G IV L+ YGCR +Q+ + + ++ + E+ +V + D GN+V+QK +E
Sbjct: 605 LMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGNHVIQKCIEN 664
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
+ ++ ML Q+ + ++ +G R + +LLE ++ Q + + L
Sbjct: 665 IPAD---KVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVL 721
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
+KD G+YV Q+ ++ + E+ + + +++ + ++ K V++ C+EY +R+
Sbjct: 722 SKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDL 781
Query: 331 XXXXXXXXXXXXXX------DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYG 384
D YGNYVVQ + +L ++ H + YG
Sbjct: 782 IIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYG 841
Query: 385 SNVVERCLLESGEE 398
++V R S EE
Sbjct: 842 KHIVSRLEQPSIEE 855
Score = 178 (67.7 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 55/203 (27%), Positives = 88/203 (43%)
Query: 230 LVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSH 289
+V + HG R + + LEN P++ + V + P A L D G+YVIQ ++ +
Sbjct: 537 IVEFSADQHGSRFIQQKLENC-KPEEKAAVFREILPHACKLMTDVFGNYVIQKFFEYGNS 595
Query: 290 EDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGN 349
K L +++ ++ GC V+Q ++ + QR R D GN
Sbjct: 596 TQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCVRDQNGN 655
Query: 350 YVVQHLLALRVPQITAS-LLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIE-L 407
+V+Q + +P +L G S S + YG V++R L + R I E +
Sbjct: 656 HVIQKCIE-NIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEI 714
Query: 408 LRSPNVSMLLMHPFGNYVIQSAL 430
L S V +L +GNYV Q L
Sbjct: 715 LES--VCVLSKDQYGNYVTQHVL 735
Score = 144 (55.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 46/184 (25%), Positives = 79/184 (42%)
Query: 247 LENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306
LE L + + L+ + V + D +G IQ +++ E+ + E+ + +
Sbjct: 517 LEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKL 576
Query: 307 ATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITAS 366
TD G V+Q EY QR+ YG V+Q L + P
Sbjct: 577 MTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVR 636
Query: 367 LLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVI 426
L R+L+G + ++ G++V+++C+ E+ ++ R VS L MHP+G VI
Sbjct: 637 LARELDGQVMRCVRDQNGNHVIQKCI-ENIPADKVGFMLYAFRG-QVSSLSMHPYGCRVI 694
Query: 427 QSAL 430
Q L
Sbjct: 695 QRLL 698
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 348 (127.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 78/293 (26%), Positives = 152/293 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 907 FEFGSHEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 963
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 964 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1023
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1024 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1083
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1084 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1136
Score = 231 (86.4 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
Identities = 64/251 (25%), Positives = 119/251 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 982 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1035
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1036 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1095
Query: 327 QRE-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1096 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1155
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1156 KYTYGKHILAK 1166
Score = 163 (62.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 48/189 (25%), Positives = 88/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY 891
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 950
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPY 1008
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1009 GCRVIQRIL 1017
Score = 38 (18.4 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 69 FDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNL 103
++ H +P +N H + + +N D L L
Sbjct: 103 YNTSKHRWPTGDNIHAEHQVRSMDELNHDFQALAL 137
>WB|WBGene00004244 [details] [associations]
symbol:puf-8 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0007276 "gamete
generation" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0040022 "feminization of hermaphroditic
germ-line" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007140 "male meiosis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0007283 GO:GO:0003723
GO:GO:0042127 GO:GO:0007140 GO:GO:0040027 GO:GO:0040020
GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00680000100664 EMBL:FO080733 PIR:T15717
RefSeq:NP_495523.3 ProteinModelPortal:Q09487 SMR:Q09487
DIP:DIP-27165N MINT:MINT-1110716 STRING:Q09487 PaxDb:Q09487
EnsemblMetazoa:C30G12.7 GeneID:174197 KEGG:cel:CELE_C30G12.7
UCSC:C30G12.7 CTD:174197 WormBase:C30G12.7 InParanoid:Q09487
OMA:KDSIFDE NextBio:882961 Uniprot:Q09487
Length = 535
Score = 324 (119.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 82/289 (28%), Positives = 144/289 (49%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTM-SSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQK 206
L D+RG ++ AKDQ G R +Q+ + SS + E + IF EV+ EL+ D FGNYVVQK
Sbjct: 192 LSDIRGALLKFAKDQVGSRFIQQELASSKDRFEKDSIFDEVVSNADELVDDIFGNYVVQK 251
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
E E R++ + + ++ + R + K LE + P QI +L+ +R
Sbjct: 252 FFEYGEERHWARLVDAIID---RVPEYAFQMYACRVLQKALEKINEPLQIK-ILSQIRHV 307
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLN---EVADNCYGIATDKSGCCVLQHCVEYS 323
KD NG++V+Q ++ S + +++++ E ++ Y ++ D GC V+Q C+E+
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSPQYVQFIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHC 367
Query: 324 KGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKY 383
+Q + + YGNYVVQH++ + ++ ++ + F+ +KY
Sbjct: 368 SPSQTKPVIGQIHKRFDEIANNQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKY 427
Query: 384 GSNVVERCLLESGEEQSTRIIIELLRS-----PNVSMLLMHPFGNYVIQ 427
SNV+E+CL + + I+ P V ++ + NYV+Q
Sbjct: 428 SSNVIEKCLEQGAVYHKSMIVGAACHHQEGSVPIVVQMMKDQYANYVVQ 476
Score = 184 (69.8 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 60/222 (27%), Positives = 100/222 (45%)
Query: 159 AKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE-LMIDPFGNYVVQKLVELCSEEQRT 217
A Y CR LQ+ + + E +++ + I V M D GN+VVQK +E S +
Sbjct: 276 AFQMYACRVLQKALEKI-NEPLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEKVSPQYVQ 334
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
I+ L + + ++ +G R V + LE+ + P Q V+ + + + G+
Sbjct: 335 FIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCS-PSQTKPVIGQIHKRFDEIANNQYGN 393
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVE----YSK----GAQRE 329
YV+Q+ ++H S ED ++ V++N + AT K V++ C+E Y K GA
Sbjct: 394 YVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEKCLEQGAVYHKSMIVGAACH 453
Query: 330 RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQL 371
D Y NYVVQ + Q+T+ R+L
Sbjct: 454 HQEGSVPIVVQMMK-DQYANYVVQKMF----DQVTSEQRREL 490
Score = 135 (52.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 43/166 (25%), Positives = 77/166 (46%)
Query: 137 QWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMI 196
Q++Q F +L + I ++ D YGCR +QR + + + + ++ R E+
Sbjct: 331 QYVQ--FIVDTLLESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIAN 388
Query: 197 DPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQI 256
+ +GNYVVQ ++E SEE R I+ ++N+ F+ + + + K LE +
Sbjct: 389 NQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFAT---HKYSSNVIEKCLEQGAVYHKS 445
Query: 257 SLVLAALR------PGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
+V AA P V + KD +YV+Q + E + L+
Sbjct: 446 MIVGAACHHQEGSVPIVVQMMKDQYANYVVQKMFDQVTSEQRRELI 491
Score = 45 (20.9 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 30/121 (24%), Positives = 49/121 (40%)
Query: 18 GSPSRGLPAAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFSHLNVNDRIFDNPVHHFP 77
GSP R P+ E RLP+T E + Y H I N +H F
Sbjct: 38 GSPIRSYGRHISTNPKNE--RLPDTP--------EFQFATYM-HQG-GKVIGQNTLHMFG 85
Query: 78 LVENGFFSHPCQEAEPINQD-----SSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLS 132
+ + + QE PI+ + S+I N NH ++G N+++ + + Q + L
Sbjct: 86 TPPSCYCA---QENIPISSNVGHVLSTINNNYMNHQYNGSNMFSNQMTQMLQAQAYNDLQ 142
Query: 133 L 133
+
Sbjct: 143 M 143
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 355 (130.0 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 81/288 (28%), Positives = 146/288 (50%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ LM D FGNYV+QK
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L ++ ++ + L +G R + K +E + Q+I +V L
Sbjct: 692 FEHGLPPQRRELADKLFDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHV 747
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ N ++T GC V+Q +E+
Sbjct: 748 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPD 807
Query: 328 RE-RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ + D YGNYV+QH+L P ++++L G V S K+ SN
Sbjct: 808 TQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 867
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 868 VVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 915
Score = 209 (78.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 65/270 (24%), Positives = 127/270 (47%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEE-IEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
N++ L+ YGCR +Q+ + + ++ I+M+ E+ V + D GN+VVQK +E
Sbjct: 710 NVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRCVRDQNGNHVVQKCIECVP 768
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
EE I +++ +V + + +G R + ++LE+ +P S V+ + L +
Sbjct: 769 EEN---IEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMDEIMSTISMLAQ 825
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXX 332
D G+YVIQ+ ++H ++ ++ E+A ++ K V++ C+ + +RE
Sbjct: 826 DQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLV 885
Query: 333 XXXXXXXX------XXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
D + NYVVQ +L Q +L +++ H + YG +
Sbjct: 886 NEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKH 945
Query: 387 VVERC--LLESGEEQSTRIIIELLRSPNVS 414
+V R L+ +GE R+ ++ L P ++
Sbjct: 946 IVARVEKLVAAGER---RMALQSLTQPQMA 972
Score = 134 (52.2 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 43/185 (23%), Positives = 78/185 (42%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + LA + V + D G IQ ++ + ++ + E+ +
Sbjct: 618 MLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALA 677
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR YG V+Q + +
Sbjct: 678 LMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 737
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C+ E E++ II NV L HP+G V
Sbjct: 738 KMVKELDGHVMRCVRDQNGNHVVQKCI-ECVPEENIEFIISTFFG-NVVTLSTHPYGCRV 795
Query: 426 IQSAL 430
IQ L
Sbjct: 796 IQRVL 800
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 352 (129.0 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 87/289 (30%), Positives = 148/289 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVC-ELMIDPFGNYVVQK 206
L D+ GN+V + DQ+G R +Q+ +++ +EE E +F E+ C +LM+D FGNYVVQK
Sbjct: 394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQK 453
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
E +E+Q+ +L + F L L +G R V K +E ++ Q+ L+ L
Sbjct: 454 YFEFGNEKQKQILLSQIKGHVFSL---SLQMYGCRVVQKAIEYISPEHQVQLI-QELDGH 509
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ D NG++VIQ ++ +++L + + ++ GC V+Q +E+ +
Sbjct: 510 VLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-S 568
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+R+ D YGNYVVQH+L + + H + SC+K+ SN
Sbjct: 569 ERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASN 628
Query: 387 VVERCLLESGEEQSTRIIIELL--RSPNVSMLLM---HPFGNYVIQSAL 430
VVERC+ + RI+ +++ ++ N S+L++ + NYVIQ L
Sbjct: 629 VVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLL 677
Score = 218 (81.8 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/249 (22%), Positives = 117/249 (46%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSL-PKEEIEMIFVEVIDRVCELMIDPFGNYVVQK 206
L ++G++ +L+ YGCR +Q+ + + P+ ++++I E+ V + + D GN+V+QK
Sbjct: 467 LSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLI-QELDGHVLDCVCDQNGNHVIQK 525
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
+E C + + +L + + + +G R + + +E+ + ++ L++ L P
Sbjct: 526 AIE-CIDTGHLQFILRALRPQIHV--LSAHPYGCRVIQRAIEHCHSERK--LIIEELLPH 580
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ LT+D G+YV+Q+ ++ S D KY+ + + D+ ++ K V++ C+ Y
Sbjct: 581 ILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDV 640
Query: 327 QRERXXXXXXXXXXXXXX-------DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
R R D Y NYV+Q LL + L+ + H
Sbjct: 641 DRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDASPEEERDLLISYIYPHISVLK 700
Query: 380 CNKYGSNVV 388
YG +++
Sbjct: 701 KFTYGKHLI 709
Score = 156 (60.0 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 59/281 (20%), Positives = 128/281 (45%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
L D +G +Q+ +++ +++ ++ V L + +G VVQK +E S E +
Sbjct: 441 LMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQV 500
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
+++ L D L +C + +G + K +E + + + +L ALRP L+ G
Sbjct: 501 QLIQEL--DGHVLDCVC-DQNGNHVIQKAIECI-DTGHLQFILRALRPQIHVLSAHPYGC 556
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXX 337
VIQ ++H H + K ++ E+ + + D+ G V+QH + G++ ++
Sbjct: 557 RVIQRAIEH-CHSERKLIIEELLPHILKLTQDQYGNYVVQHILR--TGSESDKKYIFDLM 613
Query: 338 XXXXXXXDC--YGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN--------KYGSNV 387
C + + VV+ ++ +L ++ +C+ KY + V
Sbjct: 614 IDHLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAE-NCSILMLMMKDKYANYV 672
Query: 388 VERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQS 428
+++ LL++ E+ ++I + P++S+L +G ++I S
Sbjct: 673 IQK-LLDASPEEERDLLISYIY-PHISVLKKFTYGKHLIMS 711
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 353 (129.3 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 81/288 (28%), Positives = 147/288 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ + LM D FGNYV+QK
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKF 683
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L ++ ++ + L +G R + K +E + Q+I +V L
Sbjct: 684 FEHGLPPQRRELGEKLIDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIQMV-KELDGHV 739
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ + ++T GC V+Q +E+
Sbjct: 740 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPD 799
Query: 328 RE-RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ + D YGNYVVQH+L P ++++L G V S K+ SN
Sbjct: 800 TQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 859
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 860 VVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 907
Score = 221 (82.9 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 67/270 (24%), Positives = 128/270 (47%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEE-IEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
N++ L+ YGCR +Q+ + + ++ I+M+ E+ V + D GN+VVQK +E
Sbjct: 702 NVLPLSLQMYGCRVIQKAIEVVDLDQKIQMV-KELDGHVMRCVRDQNGNHVVQKCIECVP 760
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
EE I +++ +V + + +G R + ++LE+ NP S V+ + LT+
Sbjct: 761 EEN---IEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQ 817
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXX 332
D G+YV+Q+ ++H ++ ++ E+A ++ K V++ C+ + +RE
Sbjct: 818 DQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLV 877
Query: 333 XXXXXXXX------XXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
D + NYVVQ +L Q +L +++ H + YG +
Sbjct: 878 NEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKH 937
Query: 387 VVERC--LLESGEEQSTRIIIELLRSPNVS 414
+V R L+ +GE R+ ++ L P V+
Sbjct: 938 IVARVEKLVAAGER---RMALQSLPQPLVA 964
Score = 123 (48.4 bits), Expect = 0.00044, P = 0.00044
Identities = 41/185 (22%), Positives = 77/185 (41%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + L+ + V + D G IQ ++ + ++ + E+
Sbjct: 610 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALA 669
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR YG V+Q + +
Sbjct: 670 LMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 729
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C+ E E++ II +V L HP+G V
Sbjct: 730 QMVKELDGHVMRCVRDQNGNHVVQKCI-ECVPEENIEFIISTFFG-HVVTLSTHPYGCRV 787
Query: 426 IQSAL 430
IQ L
Sbjct: 788 IQRVL 792
>CGD|CAL0000998 [details] [associations]
symbol:PUF3 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0008298 "intracellular
mRNA localization" evidence=IEA] [GO:0051646 "mitochondrion
localization" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IEA]
[GO:0009060 "aerobic respiration" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000998 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 EMBL:AACQ01000198
EMBL:AACQ01000197 RefSeq:XP_711443.1 RefSeq:XP_711460.1
ProteinModelPortal:Q59P09 GeneID:3646939 GeneID:3646950
KEGG:cal:CaO19.1795 KEGG:cal:CaO19.9361 Uniprot:Q59P09
Length = 929
Score = 334 (122.6 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 81/262 (30%), Positives = 133/262 (50%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L+D+ G+ + KDQ+G R +Q+ + +EE E IF E+ + ELM D FGNYV+QK
Sbjct: 582 LKDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISYELMTDVFGNYVIQKY 641
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + Q+ +L + +L L +G R V + LE + N Q+ ++ L+
Sbjct: 642 FEYGTTTQKQVLLESMIGHIHEL---SLQMYGCRVVQRALEAIDNEGQLRII-EELKDHI 697
Query: 268 VTLTKDTNGHYVIQYCVKHFS-HEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++VIQ ++ +Y+L + + Y ++T GC V+Q +EYS
Sbjct: 698 LICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDID 757
Query: 327 QRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
++ D YGNYV+QH+L + +L + G V FS +K+ SN
Sbjct: 758 DQKLILSQLNNFLYYLILDQYGNYVIQHILENGTQEEKEPILEIVLGSVVQFSKHKFASN 817
Query: 387 VVERCLLESGEEQSTRIIIELL 408
V+E+C+ Q RI+ E++
Sbjct: 818 VIEKCIKFGDINQRKRILHEVM 839
Score = 136 (52.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 47/191 (24%), Positives = 84/191 (43%)
Query: 246 LLENL-TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
LLE + +NP+ L + A+ TKD +G IQ + + E+ + + NE+ + Y
Sbjct: 569 LLEEVRSNPKPYQL--KDIYGHAIEFTKDQHGSRFIQQKLPEATEEEKETIFNEIWEISY 626
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ TD G V+Q EY Q++ YG VVQ L +
Sbjct: 627 ELMTDVFGNYVIQKYFEYGTTTQKQVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQ 686
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++ +L+ H + ++ G++V+++ + + R I+ L + + L HP+G
Sbjct: 687 LRIIEELKDHILICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDN-QIYHLSTHPYGCR 745
Query: 425 VIQSALLVSKV 435
VIQ L S +
Sbjct: 746 VIQRLLEYSDI 756
Score = 122 (48.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 53/248 (21%), Positives = 104/248 (41%)
Query: 186 EVIDRVCELMIDPFGN-YVVQKLVELCSEEQRTRILLMLTNDDFQL-VRICLNTHGIRAV 243
++ E D G+ ++ QKL E EE+ T + N+ +++ + + G +
Sbjct: 584 DIYGHAIEFTKDQHGSRFIQQKLPEATEEEKET-----IFNEIWEISYELMTDVFGNYVI 638
Query: 244 LKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNC 303
K E T Q+ ++L ++ L+ G V+Q ++ +E ++ E+ D+
Sbjct: 639 QKYFEYGTTTQK-QVLLESMIGHIHELSLQMYGCRVVQRALEAIDNEGQLRIIEELKDHI 697
Query: 304 YGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXX-XXDCYGNYVVQHLLALRVPQ 362
D++G V+Q +E K + R YG V+Q LL
Sbjct: 698 LICCKDQNGNHVIQKSIEKIKPFSQIRYILTSLDNQIYHLSTHPYGCRVIQRLLEYSDID 757
Query: 363 ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFG 422
+L QL ++YG+ V++ +LE+G ++ I+E++ +V H F
Sbjct: 758 DQKLILSQLNNFLYYLILDQYGNYVIQH-ILENGTQEEKEPILEIVLG-SVVQFSKHKFA 815
Query: 423 NYVIQSAL 430
+ VI+ +
Sbjct: 816 SNVIEKCI 823
Score = 44 (20.5 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 410 SPNVSMLLMHPFGNYVIQ 427
SP +++++ FGNYVIQ
Sbjct: 860 SP-LALMVKDQFGNYVIQ 876
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 351 (128.6 bits), Expect = 7.0e-31, P = 7.0e-31
Identities = 81/288 (28%), Positives = 146/288 (50%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ + LM D FGNYV+QK
Sbjct: 628 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKF 687
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L + ++ + L +G R + K +E + Q+I +V L
Sbjct: 688 FEHGLPPQRRELAEKLFD---HVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHV 743
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ + ++T GC V+Q +E+
Sbjct: 744 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPD 803
Query: 328 RE-RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ + D YGNYVVQH+L P ++++L G V S K+ SN
Sbjct: 804 TQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 863
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 864 VVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 911
Score = 210 (79.0 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 64/270 (23%), Positives = 127/270 (47%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEE-IEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
+++ L+ YGCR +Q+ + + ++ I+M+ E+ V + D GN+VVQK +E
Sbjct: 706 HVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHVMRCVRDQNGNHVVQKCIECVP 764
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
EE I +++ +V + + +G R + ++LE+ +P S V+ + L +
Sbjct: 765 EEN---IEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPDTQSKVMEEILSTVSMLAQ 821
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXX 332
D G+YV+Q+ ++H ++ ++ E+A ++ K V++ C+ + +RE
Sbjct: 822 DQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLV 881
Query: 333 XXXXXXXX------XXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
D + NYVVQ +L Q +L +++ H + YG +
Sbjct: 882 NEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKH 941
Query: 387 VVERC--LLESGEEQSTRIIIELLRSPNVS 414
VV R L+ +GE R+ ++ L P ++
Sbjct: 942 VVARIEKLVAAGER---RMALQSLTQPQMA 968
Score = 121 (47.7 bits), Expect = 0.00072, P = 0.00072
Identities = 41/185 (22%), Positives = 77/185 (41%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + L+ + V + D G IQ ++ + ++ + E+
Sbjct: 614 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALV 673
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR YG V+Q + +
Sbjct: 674 LMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKI 733
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C+ E E++ II +V L HP+G V
Sbjct: 734 KMVKELDGHVMRCVRDQNGNHVVQKCI-ECVPEENIEFIISTFFG-HVVTLSTHPYGCRV 791
Query: 426 IQSAL 430
IQ L
Sbjct: 792 IQRVL 796
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 326 (119.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 79/255 (30%), Positives = 135/255 (52%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEI--EMIFVEVIDRVCELMIDPFGNYVVQ 205
LRDL + + LA DQ+GCR LQ+ + + + + ++++ ++ +L++DPFGNY+VQ
Sbjct: 210 LRDL--DYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQ 267
Query: 206 KLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRP 265
KL + + EQ+T ++ + + FQ I +N +G R++ K+++ + N QI L++
Sbjct: 268 KLCDYLTAEQKTLLIQTIYPNVFQ---ISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQ 324
Query: 266 G------AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD--NCYGIATDKSGCCVLQ 317
VTL D NG++VIQ C+ FS ++++ + + N I+T K GCCVLQ
Sbjct: 325 EFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQ 384
Query: 318 HCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQ--ITASLLRQLEGHY 375
+ Q + D +GNY++Q LL ++ + A L +L
Sbjct: 385 KLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNEL 444
Query: 376 VSFSCNKYGSNVVER 390
SC K+ SNVVE+
Sbjct: 445 CQLSCLKFSSNVVEK 459
Score = 47 (21.6 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 412 NVSMLLMHPFGNYVIQSAL 430
N+++L+ FGNY +Q+ L
Sbjct: 508 NLNVLIRDNFGNYALQTLL 526
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 344 (126.2 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 78/292 (26%), Positives = 150/292 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 454
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ + + ++ + L +G R + K LE + + QQ +V L
Sbjct: 455 FEFGSLEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 510
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 511 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 570
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 571 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 630
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 631 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 682
Score = 236 (88.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 63/249 (25%), Positives = 118/249 (47%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ + E+ V + + D GN+VVQK +E
Sbjct: 470 IRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE- 528
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 529 CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTE 583
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 584 QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 643
Query: 329 E-------RXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 644 AVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKY 703
Query: 382 KYGSNVVER 390
YG +++ +
Sbjct: 704 TYGKHILAK 712
Score = 156 (60.0 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 46/186 (24%), Positives = 84/186 (45%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 380 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 439
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ YG V+Q L
Sbjct: 440 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 499
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C+ E + QS + II+ + V L HP+G
Sbjct: 500 NEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 557
Query: 425 VIQSAL 430
VIQ L
Sbjct: 558 VIQRIL 563
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 327 (120.2 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 76/294 (25%), Positives = 150/294 (51%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+++ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 811 LREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 870
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S +Q+ + + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 871 FEFGSLDQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 927
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEV-ADNCYGIATDKSGCCVLQHCVEYSKG 325
+ KD NG++V+Q C++ +++++ + ++T GC V+Q +E+
Sbjct: 928 VLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCRVIQRILEHCLP 987
Query: 326 AQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGS 385
Q D YGNYV+QH+L + + ++ ++ G+ + S +K+ S
Sbjct: 988 EQTLSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFAS 1047
Query: 386 NVVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
NVVE+C+ S + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1048 NVVEKCVTHSLRAERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAE 1101
Score = 244 (91.0 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 65/252 (25%), Positives = 124/252 (49%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 886 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 945
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRI-CLNTH--GIRAVLKLLENLTNPQQISLVLAALRP 265
E C + + ++ D F+ ++ L+TH G R + ++LE+ P+Q +L +
Sbjct: 946 E-CVQPHALQFII----DAFKGQQVFALSTHPYGCRVIQRILEHCL-PEQTLSILEEIHQ 999
Query: 266 GAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKG 325
L +D G+YVIQ+ ++H ED +++E+ N G++ K V++ CV +S
Sbjct: 1000 HTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGNVLGLSQHKFASNVVEKCVTHSLR 1059
Query: 326 AQRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSF 378
A+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1060 AERAMLIDEVCSMADGPHSALYTMMKDQYANYVVQKMIDVAEPTQRKIVMHKIRPHIATL 1119
Query: 379 SCNKYGSNVVER 390
YG +++ +
Sbjct: 1120 RKYTYGKHILAK 1131
Score = 164 (62.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ S + + + NE+ Y
Sbjct: 796 RLLEDFRNNRYPNLQLREIAGHVMEFSQDQHGSRFIQLKLERASPAERQLVFNEILQAAY 855
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ YG V+Q L +P
Sbjct: 856 QLMVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 914
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C+ E + + + II+ + V L HP+
Sbjct: 915 QVINEMVRELDGHVLKCVKDQNGNHVVQKCI-ECVQPHALQFIIDAFKGQQVFALSTHPY 973
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 974 GCRVIQRIL 982
Score = 48 (22.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 16/78 (20%), Positives = 32/78 (41%)
Query: 26 AAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFSHLNVNDRIFDNPVHHFPLVENGFFS 85
A H +P SP+ P + D+ + +F + + ++N H +P +N
Sbjct: 41 AGHTPQPGP-SPQAPAPTQGAGRSQDDAMVDYFFQRQHGDQPGYNNCKHRWPTGDNIHAD 99
Query: 86 HPCQEAEPINQDSSILNL 103
+ + + +N D L L
Sbjct: 100 NQVRSMDELNHDFQALAL 117
>CGD|CAL0004399 [details] [associations]
symbol:orf19.5381 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0001308 "negative
regulation of chromatin silencing involved in replicative cell
aging" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
CGD:CAL0004399 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AACQ01000050 RefSeq:XP_717758.1
ProteinModelPortal:Q5A835 GeneID:3640530 KEGG:cal:CaO19.5381
Uniprot:Q5A835
Length = 783
Score = 335 (123.0 bits), Expect = 2.3e-29, P = 2.3e-29
Identities = 86/288 (29%), Positives = 146/288 (50%)
Query: 89 QEAEPINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDS--FDCS 146
Q+ P Q ++ HNF + + N M ++ K + +DS + +
Sbjct: 383 QQGPP--QPQPAFPMMPQHNFHQ-HNQYHPRPHYRNNNGMMNVHRKNLRRKEDSAKYSDA 439
Query: 147 SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQK 206
L+D G+I+ L KDQ+GCR LQR + + + +IF E+ + ELMIDPFGNY++QK
Sbjct: 440 KLQDFTGSILTLCKDQHGCRFLQREL--INETNATLIFNEIYFKAVELMIDPFGNYLIQK 497
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
L + + EQR ++ +N+ L RI L+ HG R++ KL++ + ++I ++ L
Sbjct: 498 LFTMINLEQRLVLINQCSNE---LFRIALDPHGTRSLQKLIDVIETNEEIEIITRNLYSN 554
Query: 267 AVTLTKDTNGHYVIQYCVKHFS-----------------HED-TKYLLNEVADNCYGIAT 308
V L++D NG++V+Q + F+ H++ +++ + + N IA
Sbjct: 555 IVVLSRDLNGNHVVQKILTKFNTISSDSNSSDSNRDGAQHQNQNQFIFDIIQANLLYIAC 614
Query: 309 DKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLL 356
+ GCCVLQ C++Y Q ++ D YGNYVVQ++L
Sbjct: 615 HRHGCCVLQRCLDYGNKQQCQQLSQEIAKHTIKLSLDPYGNYVVQYVL 662
Score = 229 (85.7 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 69/293 (23%), Positives = 138/293 (47%)
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
V L D +G +Q+ + + E+ ++ + + + + +DP G +QKL+++
Sbjct: 483 VELMIDPFGNYLIQKLFTMINLEQRLVLINQCSNELFRIALDPHGTRSLQKLIDVIE--- 539
Query: 216 RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTN 275
TN++ +++ L ++ ++ L +L + +L T++ D+N
Sbjct: 540 --------TNEEIEIITRNLYSN----IVVLSRDLNGNHVVQKILTKFN----TISSDSN 583
Query: 276 GHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXX 335
+ +H +++ + + N IA + GCCVLQ C++Y Q ++
Sbjct: 584 SSDSNRDGAQH--QNQNQFIFDIIQANLLYIACHRHGCCVLQRCLDYGNKQQCQQLSQEI 641
Query: 336 XXXXXXXXXDCYGNYVVQHLL--------ALRVP-QITASLLRQLEGHYVSFSCNKYGSN 386
D YGNYVVQ++L A Q+ ++++++ +++ S +K+GSN
Sbjct: 642 AKHTIKLSLDPYGNYVVQYVLNKYSVGGDAQNTDNQVIDIIIQEIKSNFIQLSLHKFGSN 701
Query: 387 VVERCL-LESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLF 438
V+E+CL + S + +I L + LL PFGNYV+Q++L V+ + F
Sbjct: 702 VIEKCLKISSISKDLIDNLIVLDHGQAFNQLLNDPFGNYVLQTSLDVANLEQF 754
>ASPGD|ASPL0000000865 [details] [associations]
symbol:AN6587 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000110 eggNOG:COG5099 OrthoDB:EOG4RR9RJ
RefSeq:XP_664191.1 ProteinModelPortal:Q5AYP3
EnsemblFungi:CADANIAT00007365 GeneID:2870653 KEGG:ani:AN6587.2
HOGENOM:HOG000201252 OMA:SHKSSPQ Uniprot:Q5AYP3
Length = 849
Score = 322 (118.4 bits), Expect = 6.9e-28, P = 6.9e-28
Identities = 89/314 (28%), Positives = 152/314 (48%)
Query: 123 PRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEM 182
P+ W L+ R F+ L+D+ G+IV + DQYG R LQ+ + + +E +
Sbjct: 435 PQESWGPVLADFRLHGKNKRFE---LKDIYGHIVEFSGDQYGSRFLQQKIETANSDEKDR 491
Query: 183 IFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTND-DFQLVRICLNTHGIR 241
+F E++ +L D FGNYV QKL E ++ Q+ M+T D ++V++ L+ +G R
Sbjct: 492 VFREILPNFLQLAQDIFGNYVAQKLYEHGNQTQKK----MMTEDMRSKVVKLSLSPYGCR 547
Query: 242 AVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD 301
V K LE++ QQ LV ++P + + +G++VIQ ++ + TK L++
Sbjct: 548 VVQKALEHVLTDQQAWLV-REIQPQVLECVESQHGNHVIQKVFEYVPTQYTKGLVDSFRG 606
Query: 302 NCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVP 361
+T GC V+Q +E+ + R D YGNYV+QH++
Sbjct: 607 QVERQSTHSYGCRVIQRMLEFCEDVDRRFILAEIRACAPRLIEDQYGNYVIQHIIQSGEE 666
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL-----RSPNVSML 416
+ + ++ ++ + +S +K+ SNVVE+ + E Q II L + L
Sbjct: 667 EDRSFMIEMVKQKLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGHETQLIEL 726
Query: 417 LMHPFGNYVIQSAL 430
+ +GNYV Q L
Sbjct: 727 MADQYGNYVFQKVL 740
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 43/156 (27%), Positives = 71/156 (45%)
Query: 152 RGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVC--ELMIDPFGNYVVQKLVE 209
RG + + YGCR +QR + E+++ F+ R C L+ D +GNYV+Q +++
Sbjct: 605 RGQVERQSTHSYGCRVIQRMLEFC--EDVDRRFILAEIRACAPRLIEDQYGNYVIQHIIQ 662
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLE--NLTNPQQISLVLAALRPGA 267
EE R+ ++ M+ +L+ + V K +E N Q I L A G
Sbjct: 663 SGEEEDRSFMIEMVKQ---KLLWYSKHKFASNVVEKSIEFGNEAQRQDIITRLTAKTEGH 719
Query: 268 VT----LTKDTNGHYVIQYCVKHFSHEDTKYLLNEV 299
T L D G+YV Q + H S + L++ +
Sbjct: 720 ETQLIELMADQYGNYVFQKVLGHLSGVERAALVDRI 755
>ZFIN|ZDB-GENE-081031-76 [details] [associations]
symbol:pum2 "pumilio homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 ZFIN:ZDB-GENE-081031-76
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01062788 EMBL:CABZ01062789
EMBL:CABZ01062790 EMBL:CU468963 IPI:IPI00864826
Ensembl:ENSDART00000086578 Bgee:F1R4Q6 Uniprot:F1R4Q6
Length = 1206
Score = 271 (100.5 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 88/329 (26%), Positives = 162/329 (49%)
Query: 112 LRSNGNELSSVPRNQWMSS--LSLKRNQWLQD----SFDCSSLRDLRGNIVALAKDQYGC 165
L S+ ++L PR ++ S + R++ L+D F LRDL G++V ++DQ+G
Sbjct: 798 LFSSSSQLFPPPRARYSRSDVMPSGRSRLLEDFRNNRFPNLQLRDLPGHMVEFSQDQHGS 857
Query: 166 RHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTN 225
R +Q+ + E +M+F E++ +LM D FGNYV+QK E S +Q+ L + T
Sbjct: 858 RFIQQKLERATSAERQMVFGEILQAAYQLMTDVFGNYVIQKFFEFGSADQK---LALATR 914
Query: 226 DDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCV 284
++ + L +G R + K LE++++ QQ IS ++ L + KD NG++V+Q C+
Sbjct: 915 IRGHVLPLALQMYGCRVIQKALESISSDQQVISDIVRELDGHVLKCVKDQNGNHVVQKCI 974
Query: 285 KHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXX 344
+ + +++++ + ++T GC V+Q +E+ +E+
Sbjct: 975 ECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRILEH---CTQEQTLPILEELHQHSEQ 1031
Query: 345 DCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRII 404
N VQ L+V T LR + + F ++YG+ V++ L E ++I+
Sbjct: 1032 LGQKNTSVQ----LKV---TFKGLR-ICSFDLLFK-DQYGNYVIQHVLEHGRPEDKSKIV 1082
Query: 405 IELLRSPNVSMLLMHPFGNYVIQSALLVS 433
E+ R V L H F + V++ ++ S
Sbjct: 1083 AEV-RG-KVLALSQHKFASNVVEKCVIHS 1109
Score = 180 (68.4 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 64/275 (23%), Positives = 124/275 (45%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
L D +G +Q+ ++ + + V L + +G V+QK +E S +Q+
Sbjct: 886 LMTDVFGNYVIQKFFEFGSADQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQV 945
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
I ++ D +++ + +G V K +E PQ + ++ A + L+ G
Sbjct: 946 -ISDIVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQALQFIIDAFQGQVFVLSTHPYGC 1003
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXX 337
VIQ ++H + E T +L E+ + + + +Q V + KG +
Sbjct: 1004 RVIQRILEHCTQEQTLPILEELHQHSEQLGQKNTS---VQLKVTF-KGLR--------IC 1051
Query: 338 XXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGE 397
D YGNYV+QH+L P+ + ++ ++ G ++ S +K+ SNVVE+C++ S
Sbjct: 1052 SFDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSR 1111
Query: 398 EQSTRIIIELL---RSPNVSMLLM--HPFGNYVIQ 427
+ +I E+ P+ ++ M + NYV+Q
Sbjct: 1112 AERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQ 1146
Score = 175 (66.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 64/262 (24%), Positives = 116/262 (44%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
+R+L G+++ KDQ G +Q+ + + + ++ I +V L P+G V+Q++
Sbjct: 950 VRELDGHVLKCVKDQNGNHVVQKCIECVQPQALQFIIDAFQGQVFVLSTHPYGCRVIQRI 1009
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
+E C++EQ IL L QL + NT +V Q+ + LR +
Sbjct: 1010 LEHCTQEQTLPILEELHQHSEQLGQ--KNT----SV-----------QLKVTFKGLRICS 1052
Query: 268 VTLT-KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L KD G+YVIQ+ ++H ED ++ EV ++ K V++ CV +S A
Sbjct: 1053 FDLLFKDQYGNYVIQHVLEHGRPEDKSKIVAEVRGKVLALSQHKFASNVVEKCVIHSSRA 1112
Query: 327 QRERXXXXX-------XXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 1113 ERALLIDEVCCQKDGPHSALYTMMKDQYANYVVQRMIDMAEPAQRKIIMHKIRPHIATLR 1172
Query: 380 CNKYGSNVV---ERCLLESGEE 398
YG +++ E+ ++SG +
Sbjct: 1173 KYTYGKHILAKLEKYYMKSGSD 1194
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 207 (77.9 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 49/179 (27%), Positives = 95/179 (53%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK E S
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPGAVTLT 271
EQ+ + + ++ + L +G R + K LE + + QQ I+ ++ L +
Sbjct: 62 LEQKLALAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCV 118
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
KD NG++V+Q C++ + ++++ D G D+ G V+QH +E+ + + +
Sbjct: 119 KDQNGNHVVQKCIECVQPQSLQFII----DAFKG--QDQYGNYVIQHVLEHGRPEDKSK 171
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/151 (27%), Positives = 80/151 (52%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 72 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 131
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAV 268
E C + Q + ++ D F+ + +G + +LE+ P+ S ++A +R +
Sbjct: 132 E-CVQPQSLQFII----DAFK----GQDQYGNYVIQHVLEH-GRPEDKSKIVAEIRGNVL 181
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEV 299
L++ V++ CV H S + L++EV
Sbjct: 182 VLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 51/221 (23%), Positives = 101/221 (45%)
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+ E D G+ +Q +E + +R + + +QL+ ++ G + K E
Sbjct: 4 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM---VDVFGNYVIQKFFEFG 60
Query: 251 TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG----I 306
+ Q+++L +R ++L G VIQ ++ F D + ++NE+ G
Sbjct: 61 SLEQKLALA-ERIRGHVLSLALQMYGCRVIQKALE-FIPSDQQ-VINEMVRELDGHVLKC 117
Query: 307 ATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITAS 366
D++G V+Q C+E + + D YGNYV+QH+L P+ +
Sbjct: 118 VKDQNGNHVVQKCIECVQPQSLQ------FIIDAFKGQDQYGNYVIQHVLEHGRPEDKSK 171
Query: 367 LLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIEL 407
++ ++ G+ + S +K+ SNVVE+C+ + + +I E+
Sbjct: 172 IVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 212
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 40/163 (24%), Positives = 75/163 (46%)
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
++D +G IQ ++ + + + + NE+ Y + D G V+Q E+ Q+
Sbjct: 8 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 67
Query: 331 XXXXXXXXXXXXXXDCYGNYVVQHLLALRVP---QITASLLRQLEGHYVSFSCNKYGSNV 387
YG V+Q L +P Q+ ++R+L+GH + ++ G++V
Sbjct: 68 LAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQQVINEMVRELDGHVLKCVKDQNGNHV 126
Query: 388 VERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
V++C+ E + QS + II+ + + +GNYVIQ L
Sbjct: 127 VQKCI-ECVQPQSLQFIIDAFKGQD-------QYGNYVIQHVL 161
>WB|WBGene00001401 [details] [associations]
symbol:fbf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IGI;IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0010608 "posttranscriptional regulation of gene expression"
evidence=IGI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 151 (58.2 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 55/216 (25%), Positives = 101/216 (46%)
Query: 117 NELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMS-SL 175
N S N + + SL N ++ S + D G+++ A D+ GC+ L++ + SL
Sbjct: 155 NSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLD-SGDLMKFAVDKTGCQFLEKAVKGSL 213
Query: 176 PKEEIEMIFVEVIDR---VCELMIDPFGNYVVQKLVELCS---EEQRTRILLMLTND-DF 228
+ +F +VI R +L + FGNY VQ+++ + ++ + L N
Sbjct: 214 TSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISS 273
Query: 229 QLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA-VTLTKDTNGHYVIQYCVKHF 287
Q+ +CL+ R + L+N+ LV A R + + D N ++VIQ V
Sbjct: 274 QMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVI 333
Query: 288 SHEDTKYLLNEVA--DNCYGIATDKSGCCVLQHCVE 321
++ +++++ VA ++ I DK GC V+Q +E
Sbjct: 334 PLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIE 369
Score = 93 (37.8 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 347 YGNYVVQHLLA---LRVPQ---ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQS 400
Y NY++QH+++ L V + I L+R L +S S K+ S+VVE+ L + E
Sbjct: 411 YANYIIQHIVSNDDLAVYRECIIEKCLMRNL----LSLSQEKFASHVVEKAFLHAPMELL 466
Query: 401 TRIIIELLRS--PN-------VSMLLMHPFGNYVIQSALLV 432
++ E+ P+ + +++ H FGNYV+Q L +
Sbjct: 467 AEMMDEIFDGYMPHPGTGKDALDIMMFHQFGNYVVQCMLTI 507
Score = 51 (23.0 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 353 QHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPN 412
QHL + ++ S+ + + + N+Y + +++ + IIE N
Sbjct: 385 QHLRERALQRLMTSVTNRCQ----ELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRN 440
Query: 413 VSMLLMHPFGNYVIQSALLVSKVRLFS 439
+ L F ++V++ A L + + L +
Sbjct: 441 LLSLSQEKFASHVVEKAFLHAPMELLA 467
Score = 49 (22.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 45 NEKSYFDETDLSAYFSHLNVND 66
+E S ++ L+ YFS LN+ND
Sbjct: 38 HETSMWNFNSLNPYFSMLNMND 59
>UNIPROTKB|Q9N5M6 [details] [associations]
symbol:fbf-1 "Fem-3 mRNA-binding factor 1" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0009792
GO:GO:0006898 GO:GO:0048471 GO:GO:0030154 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011
GO:GO:0007283 GO:GO:0051729 GO:GO:0003730 GO:GO:0007548
GO:GO:0040027 GO:GO:0040022 GO:GO:0043073 EMBL:FO081202
RefSeq:NP_495216.1 ProteinModelPortal:Q9N5M6 SMR:Q9N5M6
IntAct:Q9N5M6 STRING:Q9N5M6 EnsemblMetazoa:H12I13.4 GeneID:174016
KEGG:cel:CELE_H12I13.4 UCSC:H12I13.4 CTD:174016 WormBase:H12I13.4
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
InParanoid:Q9N5M6 OMA:TADSINV NextBio:882139 Uniprot:Q9N5M6
Length = 614
Score = 151 (58.2 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 55/216 (25%), Positives = 101/216 (46%)
Query: 117 NELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMS-SL 175
N S N + + SL N ++ S + D G+++ A D+ GC+ L++ + SL
Sbjct: 155 NSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLD-SGDLMKFAVDKTGCQFLEKAVKGSL 213
Query: 176 PKEEIEMIFVEVIDR---VCELMIDPFGNYVVQKLVELCS---EEQRTRILLMLTND-DF 228
+ +F +VI R +L + FGNY VQ+++ + ++ + L N
Sbjct: 214 TSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISS 273
Query: 229 QLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA-VTLTKDTNGHYVIQYCVKHF 287
Q+ +CL+ R + L+N+ LV A R + + D N ++VIQ V
Sbjct: 274 QMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVI 333
Query: 288 SHEDTKYLLNEVA--DNCYGIATDKSGCCVLQHCVE 321
++ +++++ VA ++ I DK GC V+Q +E
Sbjct: 334 PLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIE 369
Score = 93 (37.8 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 30/101 (29%), Positives = 52/101 (51%)
Query: 347 YGNYVVQHLLA---LRVPQ---ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQS 400
Y NY++QH+++ L V + I L+R L +S S K+ S+VVE+ L + E
Sbjct: 411 YANYIIQHIVSNDDLAVYRECIIEKCLMRNL----LSLSQEKFASHVVEKAFLHAPMELL 466
Query: 401 TRIIIELLRS--PN-------VSMLLMHPFGNYVIQSALLV 432
++ E+ P+ + +++ H FGNYV+Q L +
Sbjct: 467 AEMMDEIFDGYMPHPGTGKDALDIMMFHQFGNYVVQCMLTI 507
Score = 51 (23.0 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 353 QHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPN 412
QHL + ++ S+ + + + N+Y + +++ + IIE N
Sbjct: 385 QHLRERALQRLMTSVTNRCQ----ELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRN 440
Query: 413 VSMLLMHPFGNYVIQSALLVSKVRLFS 439
+ L F ++V++ A L + + L +
Sbjct: 441 LLSLSQEKFASHVVEKAFLHAPMELLA 467
Score = 49 (22.3 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 45 NEKSYFDETDLSAYFSHLNVND 66
+E S ++ L+ YFS LN+ND
Sbjct: 38 HETSMWNFNSLNPYFSMLNMND 59
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 198 (74.8 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 57/213 (26%), Positives = 106/213 (49%)
Query: 222 MLTND-DFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVI 280
++T+D D+ +V I N +G + + KL+ +++ + A +R +T D YV
Sbjct: 79 LMTSDCDYFMV-ITTNKNGSKTLQKLM-GMSDDMDVFFFEAIMRLFIHVMT-DKYASYVT 135
Query: 281 QYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCV-EYSKGAQRERXXXXXXXXX 339
++ F + + + +++ +A D+ GC L + + R++
Sbjct: 136 IQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNA 195
Query: 340 XXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQ 399
D YGN+VVQH+L LR + T ++ +L G+ V S KYGS +VER LLE+G+
Sbjct: 196 LLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVER-LLEAGDVP 254
Query: 400 STRIIIELL--RSPNVSMLLMHPFGNYVIQSAL 430
++++LL ++ + L +GN+V+ AL
Sbjct: 255 MATVVLDLLACKTEMLIRLARSEYGNFVVCKAL 287
>GENEDB_PFALCIPARUM|PFD0825c [details] [associations]
symbol:PFD0825c "RNA-binding protein of
pumilio/mpt5 family, putative" species:5833 "Plasmodium falciparum"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 201 (75.8 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 81/379 (21%), Positives = 158/379 (41%)
Query: 58 YFSHLNVNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGN 117
Y+ H ++I N ++H EN + +E + + S ++ N + N
Sbjct: 112 YYIHKENQEKIDYNQIYHN--FENNHNFEYFKNSE--HYEKSPEQVIDNKRY---YENLP 164
Query: 118 ELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPK 177
E + + + K N+ Q D S + +I L + GC ++ + + K
Sbjct: 165 EQVIINKKDMFKNDEEKHNEEGQVHIDMSKVMY---DIYFLCFHKNGCEYIIKKLKEDNK 221
Query: 178 EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRIL-LMLTNDDFQLVRICLN 236
EE E+I ++ L D +G+YV Q + +L E+ + R L + F + L+
Sbjct: 222 EEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSF----LTLH 277
Query: 237 THGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
T+G R + K LE+L++ + + L+ + NG++VIQ CV+ ++
Sbjct: 278 TYGCRLIQKSLESLSDEYKCK-IFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIII 336
Query: 297 NEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLL 356
N + + +++ GC ++Q E Q R + YGNYV+Q
Sbjct: 337 NIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK-NRYGNYVIQKCF 395
Query: 357 ALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRS-----P 411
I + ++ S +KY N++E+ LL+ + +II +++
Sbjct: 396 EHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKD 455
Query: 412 NVSMLLMHPFGNYVIQSAL 430
N+ + +GN+++Q L
Sbjct: 456 NIINICKDCYGNFMMQKLL 474
>UNIPROTKB|Q8I1R7 [details] [associations]
symbol:PFD0825c "RNA-binding protein of pumilio/mpt5
family, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0017148 "negative regulation of translation" evidence=ISS]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0003723 EMBL:AL844503
HOGENOM:HOG000225260 RefSeq:XP_001351478.1
ProteinModelPortal:Q8I1R7 EnsemblProtists:PFD0825c:mRNA
GeneID:812518 KEGG:pfa:PFD0825c EuPathDB:PlasmoDB:PF3D7_0417100
OMA:IDHINDI ProtClustDB:CLSZ2500510 Uniprot:Q8I1R7
Length = 514
Score = 201 (75.8 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 81/379 (21%), Positives = 158/379 (41%)
Query: 58 YFSHLNVNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGN 117
Y+ H ++I N ++H EN + +E + + S ++ N + N
Sbjct: 112 YYIHKENQEKIDYNQIYHN--FENNHNFEYFKNSE--HYEKSPEQVIDNKRY---YENLP 164
Query: 118 ELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPK 177
E + + + K N+ Q D S + +I L + GC ++ + + K
Sbjct: 165 EQVIINKKDMFKNDEEKHNEEGQVHIDMSKVMY---DIYFLCFHKNGCEYIIKKLKEDNK 221
Query: 178 EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRIL-LMLTNDDFQLVRICLN 236
EE E+I ++ L D +G+YV Q + +L E+ + R L + F + L+
Sbjct: 222 EEKEIILNSLLIDTMSLCPDIYGSYVAQSIFDLKDEKYKERFTDEFLKHTSF----LTLH 277
Query: 237 THGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
T+G R + K LE+L++ + + L+ + NG++VIQ CV+ ++
Sbjct: 278 TYGCRLIQKSLESLSDEYKCK-IFKELQEDLIKYICHQNGNHVIQKCVEVLPCSYIDIII 336
Query: 297 NEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLL 356
N + + +++ GC ++Q E Q R + YGNYV+Q
Sbjct: 337 NIIEEYLPFLSSHAYGCRIVQRIYEIGNEQQINRLNEQIIKKIHLIK-NRYGNYVIQKCF 395
Query: 357 ALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRS-----P 411
I + ++ S +KY N++E+ LL+ + +II +++
Sbjct: 396 EHSDDNIRFIITDEIVNDIYKLSSHKYACNIIEKILLKKEYKYKKKIIKKIVNDISDGKD 455
Query: 412 NVSMLLMHPFGNYVIQSAL 430
N+ + +GN+++Q L
Sbjct: 456 NIINICKDCYGNFMMQKLL 474
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 173 (66.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 45/172 (26%), Positives = 84/172 (48%)
Query: 159 AKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTR 218
++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK E S EQ+
Sbjct: 4 SQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLA 63
Query: 219 ILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHY 278
+ + ++ + L +G R + K LE + + QQ+ L+ G
Sbjct: 64 LAERIRG---HVLSLALQMYGCRVIQKALEFIPSDQQV-----------FALSTHPYGCR 109
Query: 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
VIQ ++H + T +L E+ + + D+ G V+QH +E+ + + +
Sbjct: 110 VIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 161
Score = 152 (58.6 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 41/149 (27%), Positives = 77/149 (51%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+RG++++LA YGCR +Q+ + +P ++ +F L P+G V+Q+++E
Sbjct: 68 IRGHVLSLALQMYGCRVIQKALEFIPSDQ--QVFA--------LSTHPYGCRVIQRILEH 117
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
C +Q IL L QLV+ + +G + +LE+ P+ S ++A +R + L
Sbjct: 118 CLPDQTLPILEELHQHTEQLVQ---DQYGNYVIQHVLEH-GRPEDKSKIVAEIRGNVLVL 173
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEV 299
++ V++ CV H S + L++EV
Sbjct: 174 SQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 140 (54.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 49/215 (22%), Positives = 95/215 (44%)
Query: 193 ELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTN 252
E D G+ +Q +E + +R + + +QL+ ++ G + K E +
Sbjct: 2 EFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLM---VDVFGNYVIQKFFEFGSL 58
Query: 253 PQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSG 312
Q+++L +R ++L G VIQ ++ F D + + ++T G
Sbjct: 59 EQKLALA-ERIRGHVLSLALQMYGCRVIQKALE-FIPSDQQV---------FALSTHPYG 107
Query: 313 CCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLE 372
C V+Q +E+ Q D YGNYV+QH+L P+ + ++ ++
Sbjct: 108 CRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 167
Query: 373 GHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIEL 407
G+ + S +K+ SNVVE+C+ + + +I E+
Sbjct: 168 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEV 202
Score = 116 (45.9 bits), Expect = 0.00018, P = 0.00018
Identities = 39/171 (22%), Positives = 74/171 (43%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
L D +G +Q+ E+ + + V L + +G V+QK +E +Q
Sbjct: 39 LMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ-- 96
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
Q+ + + +G R + ++LE+ P Q +L L L +D G+
Sbjct: 97 -----------QVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQHTEQLVQDQYGN 144
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++ +R
Sbjct: 145 YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTER 195
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 188 (71.2 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 64/245 (26%), Positives = 105/245 (42%)
Query: 194 LMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNP 253
LM D G ++++ + + R+ +LT+D + I G R V KLL +
Sbjct: 48 LMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDV 107
Query: 254 QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGC 313
+ AA+ + +T D YV + F K L + + +A D+ GC
Sbjct: 108 D--AFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 314 CVLQHCV-EYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLE 372
L + + R++ D GN+VVQH+L L + ++ L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 373 GHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLR--SPNVSMLLMHPFGNYVIQSAL 430
G + S KYGS +VE+ LLE EE +++ELL + L + FGN+V+ AL
Sbjct: 226 GQCIELSFKKYGSYIVEK-LLEV-EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKAL 283
Query: 431 LVSKV 435
+K+
Sbjct: 284 RFTKM 288
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 187 (70.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 64/244 (26%), Positives = 104/244 (42%)
Query: 194 LMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNP 253
LM D G ++++ + + R+ +LT+D + I G R V KLL +
Sbjct: 48 LMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDV 107
Query: 254 QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGC 313
+ AA+ + +T D YV + F K L + + +A D+ GC
Sbjct: 108 D--AFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 314 CVLQHCV-EYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLE 372
L + + R++ D GN+VVQH+L L + ++ L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 373 GHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLR--SPNVSMLLMHPFGNYVIQSAL 430
G + S KYGS +VE+ LLE EE +++ELL + L + FGN+V+ AL
Sbjct: 226 GQCIELSFKKYGSYIVEK-LLEV-EESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKAL 283
Query: 431 LVSK 434
+K
Sbjct: 284 RFTK 287
>WB|WBGene00022257 [details] [associations]
symbol:puf-11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009792 GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000003 GO:GO:0003723 EMBL:FO081731
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
RefSeq:NP_741425.1 ProteinModelPortal:Q8IU00 SMR:Q8IU00
IntAct:Q8IU00 STRING:Q8IU00 PaxDb:Q8IU00 EnsemblMetazoa:Y73B6BL.38
GeneID:177406 KEGG:cel:CELE_Y73B6BL.38 UCSC:Y73B6BL.38 CTD:177406
WormBase:Y73B6BL.38 InParanoid:Q8IU00 OMA:HVVKCGG NextBio:896676
Uniprot:Q8IU00
Length = 505
Score = 180 (68.4 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 81/298 (27%), Positives = 130/298 (43%)
Query: 114 SNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGN--IVALAKDQYGCRHLQRT 171
S+ N L+S R+ + +L + + D +L D+ N +V A D+ GCR LQ
Sbjct: 107 SSPNTLNSSTRS-YKCTLPIWAGDGEGNVSDSVTLPDVLANDALVEFATDKNGCRFLQEH 165
Query: 172 MSSLPKEEI-EMIFVEVI-DRVCELMI--DPFGNYVVQKLVELCSEEQRTRILLMLTNDD 227
+ +I + +F +++ DR L + + FGN+ VQ+++E CS + IL D
Sbjct: 166 YPTESDNDIHQKLFRKLVEDRAIFLSLCCNMFGNFFVQRVLE-CSNTEEQEILTEHLASD 224
Query: 228 FQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHF 287
L +CL+ R + ++ L L L V L+ D NG++VIQ VK
Sbjct: 225 --LYNLCLDKSACRVIQLAIQKLDVHLATRLSLELRDTYLVRLSIDQNGNHVIQKIVKTL 282
Query: 288 SHEDTKYLLNEVAD--NCYGIATDKSGCCVLQHCVE-YSKGAQRE---RXXXXXXXXXXX 341
+++ AD N + DK GC V+Q VE S E +
Sbjct: 283 PVSAWSFVVEFFADDDNLIHVCQDKYGCRVIQSTVETLSSDTYAECYQQRVVLLRSLMSG 342
Query: 342 XXXDC-------YGNYVVQHLLAL--RVPQITASLLRQ-LEGHYVSFSCNKYGSNVVE 389
+C + NYVVQH++ + ++ Q L + +S S KY S+VVE
Sbjct: 343 VTRNCSQLASNEFANYVVQHVIKCGDAMAVYRDVIIEQCLLQNLLSMSQEKYASHVVE 400
>WB|WBGene00001402 [details] [associations]
symbol:fbf-2 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0051729 "germline cell cycle switching, mitotic to meiotic cell
cycle" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=IGI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IPI] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0030154 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0017148 GO:GO:0040011 GO:GO:0007283
GO:GO:0051729 GO:GO:0040035 GO:GO:0003730 GO:GO:0045132
GO:GO:0040027 GO:GO:0040022 GO:GO:0043186 eggNOG:COG5099
GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078 EMBL:FO080717
PIR:T16128 RefSeq:NP_495220.1 PDB:3K5Q PDB:3K5Y PDB:3K5Z PDB:3K61
PDB:3K62 PDB:3K64 PDB:3QG9 PDB:3QGB PDB:3QGC PDB:3V6Y PDB:3V74
PDBsum:3K5Q PDBsum:3K5Y PDBsum:3K5Z PDBsum:3K61 PDBsum:3K62
PDBsum:3K64 PDBsum:3QG9 PDBsum:3QGB PDBsum:3QGC PDBsum:3V6Y
PDBsum:3V74 ProteinModelPortal:Q09312 SMR:Q09312 MINT:MINT-3385835
STRING:Q09312 EnsemblMetazoa:F21H12.5 GeneID:174017
KEGG:cel:CELE_F21H12.5 UCSC:F21H12.5 CTD:174017 WormBase:F21H12.5
InParanoid:Q09312 OMA:FALENID EvolutionaryTrace:Q09312
NextBio:882143 Uniprot:Q09312
Length = 632
Score = 163 (62.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 62/246 (25%), Positives = 116/246 (47%)
Query: 88 CQEAEPINQDSSILNLLHNH-NFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCS 146
C A+ I++ S + H H + + N S N + + SL N ++ S
Sbjct: 128 CFSAD-IDRSKSYGSSKHYHLKYSRPALSRNSRSFTRSNNVLPTWSLDSNGEMRSRLSLS 186
Query: 147 SLRDLRGNIVALAKDQYGCRHLQRTMS-SLPKEEIEMIFVEVIDR---VCELMIDPFGNY 202
+ D G+++ A D+ GC+ L++ + SL + +F +VI R +L + FGNY
Sbjct: 187 EVLD-SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNY 245
Query: 203 VVQKLVELC---SEEQRTRILLMLTND-DFQLVRICLNTHGIRAVLKLLENLTNPQQISL 258
+VQ ++ + +++ T+ L N Q+ +CL+ R + L+N+ L
Sbjct: 246 LVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKL 305
Query: 259 VLAALRPGA-VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVA--DNCYGIATDKSGCCV 315
V A R + + D N ++VIQ V ++ +++++ VA ++ I +DK GC V
Sbjct: 306 VQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRV 365
Query: 316 LQHCVE 321
+Q +E
Sbjct: 366 VQTIIE 371
Score = 54 (24.1 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 20 PSRGLPAAHFRRPRQESPRLPNTSLNEKSYFDETDLSAYFSHLNVNDRI 68
PS G+ + + P Q SP + +E +D L+ YFS LN+ND I
Sbjct: 20 PSTGIDS--YPTPAQ-SPM----AQHETPMWDFNSLNPYFSMLNMNDGI 61
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 13/73 (17%), Positives = 30/73 (41%)
Query: 367 LLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVI 426
L+ + + N+Y + +++ + IIE N+ L F ++V+
Sbjct: 397 LMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVV 456
Query: 427 QSALLVSKVRLFS 439
+ A L + + L +
Sbjct: 457 EKAFLHAPLELLA 469
>ASPGD|ASPL0000066087 [details] [associations]
symbol:AN7474 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304
eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:XP_680743.1
ProteinModelPortal:Q5AW56 EnsemblFungi:CADANIAT00000567
GeneID:2869548 KEGG:ani:AN7474.2 HOGENOM:HOG000182368 OMA:RACLESH
Uniprot:Q5AW56
Length = 1175
Score = 183 (69.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 60/243 (24%), Positives = 107/243 (44%)
Query: 178 EEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNT 237
+EIE + ++ + EL D GN VVQKL E SE + RIL+ + L I ++
Sbjct: 672 QEIEETAIAMLPEIAELASDYLGNTVVQKLFEYSSEPIKERILVPIAP---HLGEIGVHK 728
Query: 238 HGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLN 297
+G A K+++ P Q+ +++ ALRP V L D G+YV+Q C++ F ++
Sbjct: 729 NGTWAAQKIIDVAKTPAQMRMIVDALRPYTVPLFLDQYGNYVLQCCLR-FGSPYNDFVFE 787
Query: 298 EVADNCYGIATDKSGCCVLQHCVE--YSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHL 355
+ + IA + G ++ C+E ++ Q+ + G ++
Sbjct: 788 TMLSRMWEIAQGRFGARAMRACLESHHATKDQQRMLAAAIALHSVQLATNANGALLLTWF 847
Query: 356 L-ALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIE-LLRSPNV 413
L P L +L H V +K V + + + E ++ I+++ L SP
Sbjct: 848 LDTCTFPHRRTVLAPRLVPHLVHLCTHKVAYLTVLKVINQRNEPEARNIVLKALFFSPGD 907
Query: 414 SML 416
+L
Sbjct: 908 EVL 910
>POMBASE|SPBC56F2.08c [details] [associations]
symbol:SPBC56F2.08c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBC56F2.08c GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000288 eggNOG:COG5099
OrthoDB:EOG4MWCFG PIR:T40536 RefSeq:NP_596709.1
ProteinModelPortal:O60059 EnsemblFungi:SPBC56F2.08c.1
GeneID:2540913 KEGG:spo:SPBC56F2.08c NextBio:20802028
Uniprot:O60059
Length = 661
Score = 178 (67.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 47/158 (29%), Positives = 81/158 (51%)
Query: 166 RHLQRTMSS--LPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLML 223
R +++ + S +EEIE+I ++D V EL D GN VVQK E CS+ + +L +
Sbjct: 169 REIRKNIDSGFYTQEEIEVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERI 228
Query: 224 TNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYC 283
L I ++ +G A K+++ + +Q+ L++ LRP L D G+YV Q C
Sbjct: 229 AP---YLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCC 285
Query: 284 VKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVE 321
++ F + +L +A +C I + G ++ C+E
Sbjct: 286 LR-FKYPKNTFLFEVMARHCCEIGQSRFGARAIRACLE 322
>WB|WBGene00004239 [details] [associations]
symbol:puf-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0035046 "pronuclear
migration" evidence=IMP] [GO:0009992 "cellular water homeostasis"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 65/232 (28%), Positives = 104/232 (44%)
Query: 144 DCSSLRDLRGN--IVALAKDQYGCRHLQRTMSSLPKEEI-EMIFVEVI-DRVCELMI--D 197
D +L+D+ N +V A D+ GCR LQ + ++ + +F +++ DR L + +
Sbjct: 133 DSVTLQDVLANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSN 192
Query: 198 PFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQIS 257
FGN+ VQ+++E CS + IL D L +CL+ R + ++ L
Sbjct: 193 MFGNFFVQRVLE-CSNTEEQEILTEHLATD--LYNLCLDKSACRVIQLAIQKLDVHLATR 249
Query: 258 LVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD--NCYGIATDKSGCCV 315
L L V L+ D NG++VIQ VK +L++ AD N + DK GC V
Sbjct: 250 LSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRV 309
Query: 316 LQHCVEY---SKGAQ-RERXXXXXXXXXXXXXXDC-------YGNYVVQHLL 356
+Q VE + AQ + +C + NYVVQH++
Sbjct: 310 IQSTVETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVI 361
Score = 119 (46.9 bits), Expect = 0.00050, P = 0.00050
Identities = 40/168 (23%), Positives = 76/168 (45%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI 188
N ++Q +CS+ + L ++ L D+ CR +Q + L + +E+
Sbjct: 196 NFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELR 255
Query: 189 D-RVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLL 247
D + L ID GN+V+QK+V+ T ++ +DD L+ +C + +G R + +
Sbjct: 256 DTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDD-NLIHVCQDKYGCRVIQSTV 314
Query: 248 ENLTNPQQIS------LVLAALRPGAVT----LTKDTNGHYVIQYCVK 285
E L+ Q ++L +L G L + +YV+Q+ +K
Sbjct: 315 ETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIK 362
>UNIPROTKB|Q9U2G4 [details] [associations]
symbol:puf-3 "Protein PUF-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0009792 GO:GO:0035046
GO:GO:0006915 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000910 GO:GO:0003730 GO:GO:0009992 EMBL:AL021488
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
HSSP:Q14671 RefSeq:NP_502606.1 ProteinModelPortal:Q9U2G4 SMR:Q9U2G4
IntAct:Q9U2G4 MINT:MINT-251162 STRING:Q9U2G4 PaxDb:Q9U2G4
EnsemblMetazoa:Y45F10A.2.1 EnsemblMetazoa:Y45F10A.2.2 GeneID:178320
KEGG:cel:CELE_Y45F10A.2 UCSC:Y45F10A.2.1 CTD:178320
WormBase:Y45F10A.2 InParanoid:Q9U2G4 OMA:HNEPANA NextBio:900640
Uniprot:Q9U2G4
Length = 502
Score = 169 (64.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 65/232 (28%), Positives = 104/232 (44%)
Query: 144 DCSSLRDLRGN--IVALAKDQYGCRHLQRTMSSLPKEEI-EMIFVEVI-DRVCELMI--D 197
D +L+D+ N +V A D+ GCR LQ + ++ + +F +++ DR L + +
Sbjct: 133 DSVTLQDVLANDALVEFATDKNGCRFLQEHYPTENDNDVHQKLFRKLVEDRAIFLSLCSN 192
Query: 198 PFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQIS 257
FGN+ VQ+++E CS + IL D L +CL+ R + ++ L
Sbjct: 193 MFGNFFVQRVLE-CSNTEEQEILTEHLATD--LYNLCLDKSACRVIQLAIQKLDVHLATR 249
Query: 258 LVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD--NCYGIATDKSGCCV 315
L L V L+ D NG++VIQ VK +L++ AD N + DK GC V
Sbjct: 250 LSLELRDTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDDNLIHVCQDKYGCRV 309
Query: 316 LQHCVEY---SKGAQ-RERXXXXXXXXXXXXXXDC-------YGNYVVQHLL 356
+Q VE + AQ + +C + NYVVQH++
Sbjct: 310 IQSTVETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVI 361
Score = 119 (46.9 bits), Expect = 0.00050, P = 0.00050
Identities = 40/168 (23%), Positives = 76/168 (45%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI 188
N ++Q +CS+ + L ++ L D+ CR +Q + L + +E+
Sbjct: 196 NFFVQRVLECSNTEEQEILTEHLATDLYNLCLDKSACRVIQLAIQKLDVHLATRLSLELR 255
Query: 189 D-RVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLL 247
D + L ID GN+V+QK+V+ T ++ +DD L+ +C + +G R + +
Sbjct: 256 DTHLVRLSIDQNGNHVIQKIVKTLPVSSWTFLVDFFADDD-NLIHVCQDKYGCRVIQSTV 314
Query: 248 ENLTNPQQIS------LVLAALRPGAVT----LTKDTNGHYVIQYCVK 285
E L+ Q ++L +L G L + +YV+Q+ +K
Sbjct: 315 ETLSTDQYAQCYQHRVILLRSLMAGVTRNCTQLASNEFANYVVQHVIK 362
>POMBASE|SPBP35G2.14 [details] [associations]
symbol:SPBP35G2.14 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001313 InterPro:IPR012677
InterPro:IPR016024 Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SMART:SM00360
PomBase:SPBP35G2.14 GO:GO:0005829 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG5099 OrthoDB:EOG4MWCFG RefSeq:NP_595389.2
EnsemblFungi:SPBP35G2.14.1 GeneID:2541323 NextBio:20802433
Uniprot:Q9P789
Length = 1065
Score = 166 (63.5 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 53/236 (22%), Positives = 105/236 (44%)
Query: 177 KEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLN 236
+EE+E I + +D V +L D GN VVQKL + CS+ + +ML L +I ++
Sbjct: 764 QEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKE---MMLERIAPHLAQIGIH 820
Query: 237 THGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
+G A K+++ + Q+ L+ L+P L D G+YV+Q C+K F ++
Sbjct: 821 KNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVF 879
Query: 297 NEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGN--YVVQH 354
+ + + IA + G ++ C+E + +R GN ++ +
Sbjct: 880 EAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTY 939
Query: 355 LLA-LRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCL-LESGEEQSTRIIIELL 408
L+ + P I L R+ V ++ N + + + + G+ ++++ +
Sbjct: 940 LVENMNYPHIPILLTRRFVQDIVRVCTHRLAYNSLLKIISISQGDTACGDLVVDAI 995
Score = 48 (22.0 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 17 FGSPSRGLPAAHFRRPRQESPRLPNTSLNEKSYFD-ETDLSA 57
FG P+ G F P S LPN S + S+F T +SA
Sbjct: 268 FG-PTLGYNTPPFGYPPTTSSALPNASGSSSSFFGLPTAVSA 308
>SGD|S000006246 [details] [associations]
symbol:PUF2 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0003729 "mRNA binding"
evidence=ISS;IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000006246
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:Z71255
EMBL:BK006949 EMBL:Z49219 GO:GO:0000288 EMBL:Z68111 eggNOG:COG5099
EMBL:Z73616 GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136
OrthoDB:EOG4MWCFG PIR:S54067 RefSeq:NP_015367.1
ProteinModelPortal:Q12221 SMR:Q12221 IntAct:Q12221
MINT:MINT-4505998 STRING:Q12221 PaxDb:Q12221 EnsemblFungi:YPR042C
GeneID:856155 KEGG:sce:YPR042C CYGD:YPR042c NextBio:981289
Genevestigator:Q12221 GermOnline:YPR042C Uniprot:Q12221
Length = 1075
Score = 165 (63.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 94/393 (23%), Positives = 162/393 (41%)
Query: 52 ETDLSAYFSHLNVNDRIFDNPVH---HFPLVENGFFSHPCQEAEPINQDSSILNLLHNHN 108
+ +L + N + + NP H L N +P P DS ++LH +
Sbjct: 443 QPELQQQPTSFNQPNLTYCNPTQNLSHLQLSSNENEPYPFPLPPPSLSDSK-KDILHTIS 501
Query: 109 FDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGC--- 165
L + EL+ + +N +LK N+ + D+ L + + V KD +
Sbjct: 502 SFKLEYDHLELNHLLQN------ALK-NKGVSDTNYFGPLPE-HNSKVPKRKDTFDAPKL 553
Query: 166 RHLQRTM--SSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLML 223
R L++ +SL E+E + + ++D++ EL D GN V+QKL E S R +ML
Sbjct: 554 RELRKQFDSNSLSTIEMEQLAIVMLDQLPELSSDYLGNTVIQKLFENSSNIIRD---IML 610
Query: 224 TNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYC 283
+ L + ++ +G K+++ P+QI+LV + + L D G+YVIQ
Sbjct: 611 RKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGI 670
Query: 284 VKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSK---GAQRERXXXXXXXXXX 340
+K F ++ V + + I ++ G ++ C+E Q
Sbjct: 671 LK-FGFPWNSFIFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSP 729
Query: 341 XXXXDCYGNYVVQHLL-ALRVPQITASLLRQLEG-HYVSFSCNKYGSNVVERCL-LESGE 397
D G ++ LL +P L +L + V C+K GS V + L L GE
Sbjct: 730 YLATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGE 789
Query: 398 EQS---TRIIIELLRSPNVSMLLMHPF---GNY 424
E++ +II + P S ++ GNY
Sbjct: 790 EEALSKNKIIHAIFDGPISSDSILFQILDEGNY 822
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 158 (60.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 59/248 (23%), Positives = 103/248 (41%)
Query: 192 CELMIDPFGNYVVQKLVELCSEEQRTRILLM---LTNDDFQLVRICLNTHGIRAVLKLLE 248
C F Y+ Q L + E+ + + + LT + + N +G +A L++L
Sbjct: 223 CAQRFTEFQKYL-QDLDTYPTAERESHLFKIGSALTTTKRIFLHLATNQYGSQA-LRILF 280
Query: 249 NLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIAT 308
+P L+ A+ L D G +I ++ + L + +A
Sbjct: 281 R-RSPSLDHLLFCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLAR 339
Query: 309 DKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLL 368
++GC L + ++ +G R+ D YG +VVQ++L L+ P T ++
Sbjct: 340 LETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIA 399
Query: 369 RQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLM--HPFGNYVI 426
+L G + + + GS VVE+CL ++E R + M FGN+V+
Sbjct: 400 ERLRGSFFRLAMERQGSYVVEKCLKSDFARDQ---VLEEFRGNAKEWVRMTTDKFGNFVV 456
Query: 427 QSALLVSK 434
QSAL V K
Sbjct: 457 QSALRVMK 464
>CGD|CAL0000283 [details] [associations]
symbol:orf19.4262 species:5476 "Candida albicans" [GO:0032473
"external side of mitochondrial outer membrane" evidence=IEA]
[GO:0034629 "cellular protein complex localization" evidence=IEA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0051654
"establishment of mitochondrion localization" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0000283 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000021
EMBL:AACQ01000022 eggNOG:COG5099 RefSeq:XP_720570.1
RefSeq:XP_720698.1 ProteinModelPortal:Q5AGB7 GeneID:3637600
GeneID:3637766 KEGG:cal:CaO19.11738 KEGG:cal:CaO19.4262
Uniprot:Q5AGB7
Length = 492
Score = 154 (59.3 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 46/151 (30%), Positives = 82/151 (54%)
Query: 179 EIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH 238
E+E + + ++D + EL D GN +VQKL L E +++++ + L ++ ++ +
Sbjct: 5 ELEELCLAMLDELPELSYDYLGNTIVQKLFTLV-ESSLVKLMMVKEVAPY-LTQLGIHKN 62
Query: 239 GIRAVLKLLENLTNP--QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
G A+ K++ NL + QQ+ L+ A+L+P AV L D G+YVIQ C+K F ++
Sbjct: 63 GTWAIQKII-NLCHSDYQQMYLIGASLKPYAVKLFNDQFGNYVIQGCIK-FGSPFNDFVF 120
Query: 297 NEVADNCYGIATDKSGC-CV---LQHCVEYS 323
+ DN I+ + G C+ L+ C + S
Sbjct: 121 EAMLDNFLEISVGRFGARCIRTILESCHDSS 151
>POMBASE|SPCC1682.08c [details] [associations]
symbol:SPCC1682.08c "RNA-binding protein Mcp2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPCC1682.08c GO:GO:0007126 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 eggNOG:COG5099
EMBL:AB189990 PIR:T41065 RefSeq:NP_587801.1
ProteinModelPortal:O74438 EnsemblFungi:SPCC1682.08c.1
GeneID:2539137 KEGG:spo:SPCC1682.08c OMA:FNDSANG OrthoDB:EOG4QNR4B
NextBio:20800309 Uniprot:O74438
Length = 703
Score = 150 (57.9 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 64/291 (21%), Positives = 125/291 (42%)
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+ ++ DQ LQ+ + + + I +I ++ LM++ FGN++VQ+ E + Q
Sbjct: 367 IIVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQ 426
Query: 216 -RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDT 274
R ML N ++++ + G V K ++N+T + LA + +T+
Sbjct: 427 IRQMGSAMLGN----MLKLATDPFGCHVVQKAIDNVTE----DIKLAMMDELFLTIDVTI 478
Query: 275 NGHYVIQYCVKHFSHEDTKY---LLNEVADNCYG----IATDKSGCCVLQHCVEYSKGAQ 327
HY K F + +Y ++N V + G +A ++G V+Q+ E
Sbjct: 479 MHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKD 538
Query: 328 RERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
+ +GN+VVQH++ + ++ L V FS +++ S V
Sbjct: 539 KRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKV 598
Query: 388 VERCLLESGEE--------QSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
+E+ + +SG + Q T ++ R P + + +GNY+IQ +
Sbjct: 599 IEKAI-KSGPKNFISLYLKQITNARVDRTRQPLID-IASDQYGNYLIQQII 647
Score = 132 (51.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 51/263 (19%), Positives = 113/263 (42%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMI-DPFGNYVVQKLVELC 211
GN++ LA D +GC +Q+ + ++ E+I++ ++ + ++ I + +V QKL E
Sbjct: 436 GNMLKLATDPFGCHVVQKAIDNVT-EDIKLAMMDELFLTIDVTIMHHYACHVWQKLFETQ 494
Query: 212 SEEQRTRILLMLTND-DFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
E ++ + N + + + +G V + EN + + + +
Sbjct: 495 WYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFH-LDGI 553
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVE--------- 321
+ G++V+Q+ V++ ED K +++ + + + D+ V++ ++
Sbjct: 554 ARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISL 613
Query: 322 YSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
Y K R D YGNY++Q ++ L P ++ ++ H VS +
Sbjct: 614 YLKQITNARVDRTRQPLIDIAS-DQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGS 672
Query: 382 KYGSNVVERCLLESGEEQSTRII 404
KYG V + ++Q + +I
Sbjct: 673 KYGQKVAYLVEKWNSQKQVSSVI 695
>SGD|S000003851 [details] [associations]
symbol:JSN1 "Member of the Puf family of RNA-binding
proteins" species:4932 "Saccharomyces cerevisiae" [GO:0051654
"establishment of mitochondrion localization" evidence=IMP]
[GO:0034629 "cellular protein complex localization" evidence=IMP]
[GO:0032473 "external side of mitochondrial outer membrane"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001313 InterPro:IPR012677 InterPro:IPR016024
Pfam:PF00076 Pfam:PF00806 PROSITE:PS50102 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SMART:SM00360 SGD:S000003851
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006943
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:L47993
GO:GO:0051654 GO:GO:0000288 EMBL:Z49591 eggNOG:COG5099
GO:GO:0034629 EMBL:L43493 PIR:S57112 RefSeq:NP_012624.1
ProteinModelPortal:P47135 SMR:P47135 DIP:DIP-1281N IntAct:P47135
MINT:MINT-405099 STRING:P47135 PaxDb:P47135 PeptideAtlas:P47135
EnsemblFungi:YJR091C GeneID:853553 KEGG:sce:YJR091C CYGD:YJR091c
GeneTree:ENSGT00690000103065 HOGENOM:HOG000113136 OMA:CLEAHDI
OrthoDB:EOG4MWCFG NextBio:974290 Genevestigator:P47135
GermOnline:YJR091C GO:GO:0032473 Uniprot:P47135
Length = 1091
Score = 149 (57.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 58/249 (23%), Positives = 106/249 (42%)
Query: 166 RHLQRTMSS--LPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLML 223
R L++++ S EIE + + ++D + EL D GN +VQKL E S+ + +ML
Sbjct: 595 RELRKSIDSNAFSDLEIEQLAIAMLDELPELSSDYLGNTIVQKLFEHSSDIIKD---IML 651
Query: 224 TNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYC 283
L + ++ +G A K++ P+QI V ++ L D G+YVIQ C
Sbjct: 652 RKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLINDQFGNYVIQ-C 710
Query: 284 VKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXX- 342
V F +++ + N + I ++ G ++ C+E E+
Sbjct: 711 VLKFGFPWNQFIFESIIANFWVIVQNRYGARAVRACLEAHDIVTPEQSIVLSAMIVTYAE 770
Query: 343 --XXDCYGNYVVQHLLALRV-PQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQ 399
+ G +V L V P + L +L V ++ S + + L G++
Sbjct: 771 YLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTILKVLNYRGDDN 830
Query: 400 STRIIIELL 408
+ +II++ L
Sbjct: 831 ARKIILDSL 839
Score = 45 (20.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 17 FGSPSRGLPAAHFRRPRQESP 37
+ P+R ++H+ P QESP
Sbjct: 287 YEQPARASISSHYTIPTQESP 307
Score = 44 (20.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 33 RQESPRLPNTSLNEKSYFDETDLSAYFSHL--NVNDRIFDNPVHHFPL-VENGFFSHPCQ 89
+Q P N + N + D + +AYF ++ ++ DN ++ L + N +S+ Q
Sbjct: 212 QQLQPTTSNNTTNSNTLNDYSTKTAYFDNMVSTSGSQMADNKMNTNNLAIPNSVWSNTRQ 271
Query: 90 EAE 92
++
Sbjct: 272 RSQ 274
>WB|WBGene00004242 [details] [associations]
symbol:puf-6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0035188 GO:GO:0005737 GO:GO:0008285 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0017148 GO:GO:0048477
GO:GO:0000910 GO:GO:0003730 GO:GO:0007281 GO:GO:0006402
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:Z81507 PIR:T21080
RefSeq:NP_496773.1 ProteinModelPortal:O01322 SMR:O01322
STRING:O01322 EnsemblMetazoa:F18A11.1.1 EnsemblMetazoa:F18A11.1.2
GeneID:174947 KEGG:cel:CELE_F18A11.1 UCSC:F18A11.1.1 CTD:174947
WormBase:F18A11.1 HOGENOM:HOG000113900 InParanoid:O01322
OMA:RDIANHI NextBio:886152 Uniprot:O01322
Length = 485
Score = 106 (42.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 31/144 (21%), Positives = 69/144 (47%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVID-RVCELMIDPFGNYVVQKLVELC 211
G ++ + KD++ CR +Q + + + E+ + + D +V+Q++V+
Sbjct: 168 GGLLVMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQL 227
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLT-NPQ------QISLV---LA 261
+ T + L++ D L+ +C + +G R V ++++ L NP+ +I L+ +
Sbjct: 228 PVDMWTFFVHFLSSGD-SLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMT 286
Query: 262 ALRPGAVTLTKDTNGHYVIQYCVK 285
+ L+ + +YVIQY +K
Sbjct: 287 CIVRNCYRLSSNEFANYVIQYVIK 310
Score = 80 (33.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 33/108 (30%), Positives = 51/108 (47%)
Query: 347 YGNYVVQHLLA-------LRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLL------ 393
+ NYV+Q+++ R I LLR L +S S +KY S+V+E L
Sbjct: 300 FANYVIQYVIKSSGIMEMYRDTIIDKCLLRNL----LSMSQDKYASHVIEGAFLFAPPAL 355
Query: 394 --ESGEEQSTRII--IELLRSPNVSMLLMHPFGNYVIQSALLVSKVRL 437
E EE + + +EL R + +LL H +GNYV+Q + + L
Sbjct: 356 LHEMMEEIFSGYVKDVELNRDA-LDILLFHQYGNYVVQQMISICTAAL 402
>WB|WBGene00004243 [details] [associations]
symbol:puf-7 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IGI]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0035188 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477 GO:GO:0003723
GO:GO:0000910 GO:GO:0007281 eggNOG:COG5099
GeneTree:ENSGT00390000017241 EMBL:FO080145 HOGENOM:HOG000113900
PIR:T32538 RefSeq:NP_500820.1 PDB:3V71 PDBsum:3V71
ProteinModelPortal:O44169 SMR:O44169 STRING:O44169
EnsemblMetazoa:B0273.2.1 EnsemblMetazoa:B0273.2.2 GeneID:177332
KEGG:cel:CELE_B0273.2 UCSC:B0273.2.1 CTD:177332 WormBase:B0273.2
InParanoid:O44169 OMA:HAMQRIR NextBio:896304 Uniprot:O44169
Length = 485
Score = 110 (43.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 32/144 (22%), Positives = 70/144 (48%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVID-RVCELMIDPFGNYVVQKLVELC 211
G ++A+ KD++ CR +Q + + + E+ + + D +V+Q++V+
Sbjct: 168 GGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQL 227
Query: 212 SEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLT-NPQ------QISLV---LA 261
+ T + L++ D L+ +C + +G R V ++++ L NP+ +I L+ +
Sbjct: 228 PVDMWTFFVHFLSSGD-SLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMT 286
Query: 262 ALRPGAVTLTKDTNGHYVIQYCVK 285
+ L+ + +YVIQY +K
Sbjct: 287 CIVRNCYRLSSNEFANYVIQYVIK 310
Score = 74 (31.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 347 YGNYVVQHLLA-------LRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLL------ 393
+ NYV+Q+++ R I LLR L +S S +KY S+V+E L
Sbjct: 300 FANYVIQYVIKSSGIMEMYRDTIIDKCLLRNL----LSMSQDKYASHVIEGAFLFAPPAL 355
Query: 394 --ESGEEQSTRIIIELLRSPN-VSMLLMHPFGNYVIQSALLVSKVRL 437
E EE + + ++ + + + +LL H +GNYV+Q + + L
Sbjct: 356 LHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAAL 402
>WB|WBGene00004241 [details] [associations]
symbol:puf-5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0035188 "hatching" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P
granule" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0035188
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0048477
GO:GO:0003723 GO:GO:0000910 EMBL:Z49967 GO:GO:0043186
eggNOG:COG5099 GeneTree:ENSGT00390000017241 HOGENOM:HOG000016078
PIR:T22634 RefSeq:NP_495814.1 ProteinModelPortal:Q20757 SMR:Q20757
STRING:Q20757 PaxDb:Q20757 EnsemblMetazoa:F54C9.8 GeneID:174373
KEGG:cel:CELE_F54C9.8 UCSC:F54C9.8 CTD:174373 WormBase:F54C9.8
InParanoid:Q20757 OMA:MISICIS NextBio:883756 Uniprot:Q20757
Length = 553
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 65/304 (21%), Positives = 133/304 (43%)
Query: 116 GNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDL--RGNIVALAKDQYGCRHLQRTMS 173
GN S+V + + + ++ + ++D +L+D+ G+++ A D+ G + L+R
Sbjct: 115 GNVQSNVRSTRLLPAWAVDNSGNIRDDL---TLQDVVSNGSLIDFAMDRTGVKFLER--- 168
Query: 174 SLPKE-EIEMIFVEVIDRVCE-------LMIDPFGNYVVQKLVELCSEEQRTRILLMLTN 225
P++ + EM FV + D++ E L GN+++QK VE + +++ R++ + +
Sbjct: 169 HFPEDHDNEMHFV-LFDKLTEQGAVFTSLCRSAAGNFIIQKFVEHATLDEQERLVRKMCD 227
Query: 226 DDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVK 285
+ L+ +CL+ R V ++ + LV + L D +V+Q VK
Sbjct: 228 NG--LIEMCLDKFACRVVQMSIQKFDVSIAMKLVEKISSLDFLPLCTDQCAIHVLQKVVK 285
Query: 286 HFSHEDTKYLLNEVA--DNCYGIATDKSGCCVLQHCVEYSKGAQR----ERXXXXXXXXX 339
+ + + DN + DK GC ++Q ++ +
Sbjct: 286 LLPISAWSFFVKFLCRDDNLMTVCQDKYGCRLVQQTIDKLSDNPKLHCFNTRLQLLHGLM 345
Query: 340 XXXXXDCY-------GNYVVQHLL-ALRVPQITASLLRQ--LEGHYVSFSCNKYGSNVVE 389
+C+ NYVVQ+++ + V ++ + + L + +S S +KY S+VVE
Sbjct: 346 TSVARNCFRLSSNEFANYVVQYVIKSSGVMEMYRDTIIEKCLLRNILSMSQDKYASHVVE 405
Query: 390 RCLL 393
L
Sbjct: 406 GAFL 409
>POMBASE|SPAC4G9.05 [details] [associations]
symbol:mpf1 "meiotic PUF family protein 1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0007126
"meiosis" evidence=IEP] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
PomBase:SPAC4G9.05 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003729 eggNOG:COG5099
OrthoDB:EOG4QNR4B EMBL:AB248102 PIR:T38864 RefSeq:NP_593687.1
ProteinModelPortal:Q10238 EnsemblFungi:SPAC4G9.05.1 GeneID:2543134
KEGG:spo:SPAC4G9.05 NextBio:20804161 Uniprot:Q10238
Length = 581
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 76/314 (24%), Positives = 130/314 (41%)
Query: 139 LQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDP 198
LQ S S + + I+ DQ LQ+ + + E+ + ++ LM +
Sbjct: 245 LQYSATISKWKAMIEQII-FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNK 303
Query: 199 FGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLL-ENLTNPQQIS 257
FGN+++QK E +E Q L +L +H ++ L++ E TN I
Sbjct: 304 FGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTN-NLIE 362
Query: 258 LVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADN----CYG----IATD 309
++ L P TL + + H V Q K F K L++ + D+ G ++
Sbjct: 363 ELIECL-PA--TLMQRHSCH-VWQ---KFFETR-RKSLVDGIFDHFNKKMQGKWLQVSVS 414
Query: 310 KSGCCVLQHCVEYSKGAQRERXXXXXXXXXXXXXXDCYGNYVVQHLLAL-RVP---QITA 365
+ G V+Q E K + +GN+V+QH++ P +I
Sbjct: 415 EMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILN 474
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPN------VSMLLMH 419
SLL+++E S+S N+Y S VVER L R + E+ N + + +
Sbjct: 475 SLLKEVE----SYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIFLQEIASN 530
Query: 420 PFGNYVIQSALLVS 433
+GNY++Q L V+
Sbjct: 531 QYGNYIVQYLLQVA 544
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 449 435 0.00087 118 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 84
No. of states in DFA: 615 (65 KB)
Total size of DFA: 281 KB (2146 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 36.76u 0.08s 36.84t Elapsed: 00:00:02
Total cpu time: 36.79u 0.08s 36.87t Elapsed: 00:00:02
Start: Mon May 20 22:46:30 2013 End: Mon May 20 22:46:32 2013