BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037508
(449 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 140/291 (48%), Positives = 199/291 (68%), Gaps = 1/291 (0%)
Query: 150 DLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVE 209
D++G + +AKDQ+GCR LQR + +IF EVI V ELM+DPFGNY++QKL++
Sbjct: 333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392
Query: 210 LCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVT 269
+C+EEQRT+I+L+ T + QL+RI LN +G R V +L+E + + +QISLV ALRPG +
Sbjct: 393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452
Query: 270 LTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRE 329
L KD NG++VIQ C++ S ED K++ + C IAT + GCCVLQ C+ YS QRE
Sbjct: 453 LIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQRE 512
Query: 330 RLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVE 389
+L+AEI N+LLLA+D +GNY VQ ++ LR+P A +L QL+GHYV S K+ S++VE
Sbjct: 513 KLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVE 572
Query: 390 RCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSS 440
RCL+ E + +I+ EL+ P+ LL P+ N+VIQ+AL +K L +S
Sbjct: 573 RCLMHCPESRP-QIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHAS 622
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 204/301 (67%), Gaps = 2/301 (0%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
+ + +G + +AKDQ+GCR LQ + +IF EVI V ELM+DPFGNY++QKL
Sbjct: 196 VSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKL 255
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
+++C+EEQRT+I+LM+T++ QL+RI LN +G R V +L+E++ +QISLV +ALRPG
Sbjct: 256 LDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGF 315
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ L +D NG++VIQ C++ S ED +++ + C IAT + GCCVLQ C+ YS G Q
Sbjct: 316 LNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQ 375
Query: 328 RERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
RE+LV EI N+L LA+D YGNY VQ +L LR A++L QL+GHYV S K+ S++
Sbjct: 376 REKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHM 435
Query: 388 VERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLFSSPPISVCK 447
VERCL E + +I+ EL+ P+ +L+ P+ N+VIQ+AL V+K L ++ + V +
Sbjct: 436 VERCLTHCPESR-PQIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHAT-LVEVIR 493
Query: 448 P 448
P
Sbjct: 494 P 494
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 103/249 (41%), Gaps = 52/249 (20%)
Query: 237 THGIRAVLKLLENL---TNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTK 293
HG V L ++ +NP + ++ + + KD +G +Q+ + S D
Sbjct: 170 VHGKSGVGALFDHQGISSNPNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDAL 229
Query: 294 YLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANA---LLLAEDCYGNY 350
+ +EV + + D G ++Q ++ QR +++ + + + ++ + YG
Sbjct: 230 VIFSEVIPHVVELMMDPFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTR 289
Query: 351 VVQHLL--------------ALRVPQITASLLRQLEGHYVSFSC---------------- 380
VVQ L+ ALR + +L+R L G++V C
Sbjct: 290 VVQRLVESIKTRKQISLVKSALRPGFL--NLIRDLNGNHVIQRCLQCLSTEDNEFIFEDA 347
Query: 381 ---------NKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALL 431
+++G V+++C+ S Q +++ E+ R N L P+GNY +Q
Sbjct: 348 TKFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISR--NSLFLAQDPYGNYAVQ---F 402
Query: 432 VSKVRLFSS 440
V ++R FS+
Sbjct: 403 VLELRDFSA 411
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 269 bits (688), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 204/311 (65%)
Query: 124 RNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMI 183
+NQ L++ N +S+ + RG I LAKDQ+GCR LQR S +IEMI
Sbjct: 251 QNQLNEDLTMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMI 310
Query: 184 FVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAV 243
F E+ID + ELM+DPFGNY+VQKL+E+C+E+QR +I+ +T L++I + HG RAV
Sbjct: 311 FNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAV 370
Query: 244 LKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNC 303
K++E ++IS++++AL+ G V L K+ NG++V+Q C+++ K+L +C
Sbjct: 371 QKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHC 430
Query: 304 YGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQI 363
+ATD+ GCCVLQ C+ YS+G Q++ LV+EI +NALLL++D +GNYV+Q++ L++
Sbjct: 431 VELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWA 490
Query: 364 TASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGN 423
T +L QLEG+Y S K SNVVE+CL + ++ RII EL+ + +++ P+GN
Sbjct: 491 TFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGN 550
Query: 424 YVIQSALLVSK 434
YVIQ+AL SK
Sbjct: 551 YVIQAALKQSK 561
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 42/251 (16%)
Query: 217 TRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNG 276
+++ D+ Q R+ L + L NL+ Q +A R L KD +G
Sbjct: 232 AKVIKYGAGDESQNGRLWLQNQLNEDLTMSLNNLSLQPQKYNSIAEARGKIYYLAKDQHG 291
Query: 277 HYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLV---- 332
+Q D + + NE+ D + D G ++Q +E QR ++V
Sbjct: 292 CRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSIT 351
Query: 333 -------------------------------AEIIANALL-----LAEDCYGNYVVQHLL 356
II +AL L ++ GN+VVQ L
Sbjct: 352 RKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCL 411
Query: 357 ALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSML 416
+P L H V + +++G V+++CL S EQ ++ E+ + N +L
Sbjct: 412 QYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEI--ASNALLL 469
Query: 417 LMHPFGNYVIQ 427
PFGNYV+Q
Sbjct: 470 SQDPFGNYVLQ 480
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 144/319 (45%), Positives = 208/319 (65%), Gaps = 14/319 (4%)
Query: 140 QDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPF 199
+DS D +S+ D G++ +AKDQ GCR LQ+ + ++ +IF EVI+ V EL DPF
Sbjct: 231 EDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTDPF 290
Query: 200 GNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLV 259
GNY++QKL+E+C+EEQRT+IL+ LT+ LV+I +N +G R V KL+E +T +QISLV
Sbjct: 291 GNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISLV 350
Query: 260 LAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHC 319
+AL PG ++L ++ NG++VI C+K FS D K++L C IAT + GCCVLQ C
Sbjct: 351 KSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRC 410
Query: 320 VEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
V YS G Q E+LV EI N+LLLA+D +GNY+VQ+++ +V + ++L +L G+YV +
Sbjct: 411 VSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV--NVLFELRGNYVKLA 468
Query: 380 CNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL--------- 430
K+GS+VVE+CL E +S +I+ EL+ N LL P+ NYVIQ AL
Sbjct: 469 TQKFGSHVVEKCLRYYPESRS-QIVNELVSVLNFGYLLQDPYANYVIQCALSKTKGFVRA 527
Query: 431 -LVSKVRLFSSPPIS-VCK 447
LV KVR + + ++ CK
Sbjct: 528 SLVEKVRRYENLKMTPYCK 546
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 208/339 (61%), Gaps = 9/339 (2%)
Query: 96 QDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNI 155
+DSS+L+ H L ++ E + + +S K N D S+ ++ G++
Sbjct: 201 EDSSLLSPFHEKVSGKLGASYLEDTVLIGQGSYGKMSPKSNN------DLVSMVEIYGSV 254
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+AKDQ GCR LQ+ + E ++I + +ID V EL +DPFGNY+VQKL ++ EEQ
Sbjct: 255 NLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKLFDVSDEEQ 314
Query: 216 RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTN 275
RT I+ +LT++ +L+RICLNT+G R V K++E + QQI+LV + L+PG + L KD N
Sbjct: 315 RTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLN 374
Query: 276 GHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEI 335
G++VIQ C++ D +++L C IA + GCCVLQ C+ S G QRERLVAEI
Sbjct: 375 GNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEI 434
Query: 336 IANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLES 395
N+L L++D +GNYVVQ+L+ +V + LL Q HY + K+ S+V+E+CL +
Sbjct: 435 SRNSLHLSQDPFGNYVVQYLIDQQVSAV--KLLVQFRMHYAELATQKFSSHVIEKCLRKY 492
Query: 396 GEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
E ++ I+ ELL PN LL P+ NYVIQ+AL V+K
Sbjct: 493 PESRA-EIVRELLCVPNFEYLLQDPYANYVIQTALSVTK 530
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 143 FDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNY 202
D S+ ++ G++ +A+DQ GCR LQ+ + + ++IF+E+ID V EL +DP GNY
Sbjct: 206 LDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNY 265
Query: 203 VVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAA 262
+VQKL+ + EEQRT I+ +LT+ +L++ICLNT+G R + K+++ + QQI+LV +A
Sbjct: 266 IVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSA 325
Query: 263 LRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY 322
L PG + L D+NG++V+Q C++ D K+++ + C +AT + GC VLQ +
Sbjct: 326 LEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLIN 385
Query: 323 SKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNK 382
+ G Q ERLVAEI ++L L++D +GNYVVQ L+ +V + +LL H + + K
Sbjct: 386 TVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLIDQQVSSV--NLLLPFRTHCIELATQK 443
Query: 383 YGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
+ S+V+E+CL + E ++ I+ ELL PN LL P+ NYVIQ+AL V+K
Sbjct: 444 FSSHVIEKCLRKYPESRA-EIVRELLSYPNFEQLLQDPYANYVIQTALSVTK 494
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 189/296 (63%), Gaps = 13/296 (4%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+R +++ AKD LQ ++ KE I+ IF +I VCELM+D +G+ V +KL+E
Sbjct: 151 IRNTLLSRAKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEK 210
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTL 270
C++EQ TR+L ++ + F+ VR+C++THG A+ L+ +L + +QIS + L ++ L
Sbjct: 211 CTDEQITRVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLL 270
Query: 271 TKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRER 330
TKD H VI +C FS T+YLL + NCY +A D++GCC+L+ + S R+
Sbjct: 271 TKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDP 330
Query: 331 LVAEIIANALLLAEDCYG----------NYVVQHLLALRVPQITASLLRQLEGHYVSFSC 380
L+ EII+ A+ L +CYG NYVVQ+LL L+ ++T++L + L+G+YV S
Sbjct: 331 LIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSY 390
Query: 381 NKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVR 436
+KYGS+VV++C LES E S RII ELL ++ LL+ P+G+YVIQ+A +VS+VR
Sbjct: 391 DKYGSHVVQKC-LESREFSSRRIIAELL--SDIDSLLVDPYGDYVIQTAWIVSEVR 443
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 149 RDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQ 205
+ L GN V L+ D+YG +Q+ + S I E++ + L++DP+G+YV+Q
Sbjct: 379 KHLDGNYVQLSYDKYGSHVVQKCLESREFSS-RRIIAELLSDIDSLLVDPYGDYVIQ 434
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 218 bits (556), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 175/283 (61%), Gaps = 3/283 (1%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSE 213
NI++ KDQ+GCR+LQR + + I+ +F E + LM+D FGNY+ QKL E SE
Sbjct: 347 NILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASE 406
Query: 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKD 273
QR+ + ++ +LV I N HG RA+ K+++ +++P QIS ++ ALRP V LTKD
Sbjct: 407 AQRSTFIQIIAP---KLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKD 463
Query: 274 TNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVA 333
NG++VIQ C+ FS ED +++ + + ++ ++T + GCCV+Q C +++ AQ E+LV
Sbjct: 464 LNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVE 523
Query: 334 EIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLL 393
I+ +AL L +D +GNYV+Q++L L P T +++ + S K+ SNV+E+C+
Sbjct: 524 HIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIF 583
Query: 394 ESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVR 436
+ ++I EL+ ++ LL F NYVIQ+AL + V+
Sbjct: 584 FAPAAIKEKLISELMDEKHLPKLLRDSFANYVIQTALDNASVK 626
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/281 (37%), Positives = 164/281 (58%), Gaps = 3/281 (1%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
G++ + KDQYGCR+LQ+ + PK + F E+ V +LMIDPFGNY+ QKL S
Sbjct: 465 GHLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYAS 524
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
EQ+ L ML +V IC N +G R++ +++ LT+ +QISL+L + P TL
Sbjct: 525 REQK---LSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLAC 581
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLV 332
D NG +V+Q C+ F E + L + +N +AT++ GCC+LQ C++ + G +ERLV
Sbjct: 582 DNNGTHVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLV 641
Query: 333 AEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCL 392
II + LLL ++ YGNY+VQH+L L + T ++ + G+ S K+ SN +E+C+
Sbjct: 642 NSIIKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCI 701
Query: 393 LESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVS 433
+ +++ E L PN+ LL + NYV+Q L V+
Sbjct: 702 RTASPSTREQMLQEFLSFPNIEQLLDDCYANYVMQRFLNVA 742
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 185/315 (58%), Gaps = 12/315 (3%)
Query: 125 NQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIF 184
N W S+ NQ SS+ + RG+ ++A D+ + L++T+ KE I+MIF
Sbjct: 187 NSWRSNEGCTYNQ----DQAASSMENGRGSYFSIATDRVWSKELEKTIFVGTKETIDMIF 242
Query: 185 VEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVL 244
+I +CELM+DPFGN VV+ L+ CS EQ I+ ++T + V IC N G A+
Sbjct: 243 DGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVDVVTRHISKFVNICFNPIGTLAIQ 302
Query: 245 KLLENLTN--PQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADN 302
LL ++ QI ++ A+ A+ LT++TN YVI C + F+ + LL V+ +
Sbjct: 303 VLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYVILACFRMFTSSQCRRLLEVVSQH 362
Query: 303 CYGIATDKSGCCVLQHCVEYSKGAQ---RERLVAEIIANALLLAEDCYGNYVVQHLLALR 359
CY IA D++GCC+LQ C + + R+RL++E+I +AL L +C+GNYVVQ+++ L
Sbjct: 363 CYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIEHALKLCLNCHGNYVVQYVVELD 422
Query: 360 VPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMH 419
T L+ +L +Y + NKYGS+VV++ L G + S I+++LLR + LL+
Sbjct: 423 NQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLKLRGID-SKLIVVDLLRG--IDTLLLD 479
Query: 420 PFGNYVIQSALLVSK 434
PFGNYVIQ+A VSK
Sbjct: 480 PFGNYVIQTAWFVSK 494
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSE 213
N LA+++YG H+ + + L + ++I V+++ + L++DPFGNYV+Q + E
Sbjct: 437 NYAHLARNKYGS-HVVQKLLKLRGIDSKLIVVDLLRGIDTLLLDPFGNYVIQTAWFVSKE 495
Query: 214 EQR 216
+ R
Sbjct: 496 DVR 498
Score = 35.8 bits (81), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 184 FVEVIDRVC-ELMIDPFGNYVVQKLVE---LCSEEQRTRILLMLTNDDFQLVRICLNTHG 239
+EV+ + C ++ ID G ++Q+ + + + E R R++ + +++CLN HG
Sbjct: 355 LLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVIE---HALKLCLNCHG 411
Query: 240 IRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEV 299
V ++E L N + L++ L L ++ G +V+Q +K D+K + V
Sbjct: 412 NYVVQYVVE-LDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLK-LRGIDSKLI---V 466
Query: 300 ADNCYGIAT---DKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHL 355
D GI T D G V+Q SK R+ L I N L+ + +GN +++ L
Sbjct: 467 VDLLRGIDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNIRLMRCNKFGNKILEKL 525
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 173/288 (60%), Gaps = 12/288 (4%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
G+I +L KDQ+GCR LQ+ + L + + IF E D ELM D FGNY++QKL+E +
Sbjct: 566 GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVT 625
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
EQR +L +++ F V I LN HG RA+ KL+E + ++ +V+ +LRP V L+K
Sbjct: 626 TEQRI-VLTKISSPHF--VEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 682
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLV 332
D NG++VIQ C++ E+ +++ + ++D+C IAT + GCCVLQ C+++ Q + L
Sbjct: 683 DLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLC 742
Query: 333 AEIIANALLLAEDCYGNYVVQHLLALRVPQ----ITASLLRQLEGHYVSFSCNKYGSNVV 388
+++A L D +GNYVVQ+++ + T ++ L+ + S +K+GSNV+
Sbjct: 743 DKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVI 802
Query: 389 ERCLLESGEEQSTRIIIELLRS---PNVSMLLMHPFGNYVIQSALLVS 433
E+ L + S +I+E+L + + LL +GNYV+Q+AL +S
Sbjct: 803 EKILKTA--IVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDIS 848
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 166/283 (58%), Gaps = 9/283 (3%)
Query: 157 ALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQR 216
A AKD+ L ++ KE ++ I+ +I +CELM+DP+G+ VVQ L+ CS EQ
Sbjct: 207 AFAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQI 266
Query: 217 TRILLMLTNDDFQLVRICLNTHGIRAVLKLLE--NLTNPQQISLVLAALRPGAVTLTKDT 274
+++ ++T FQ V IC+++ G A+ LL N QI ++ +R A+ L+K
Sbjct: 267 VQLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSN 326
Query: 275 NGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ---RERL 331
+ +VI C + F + LL + NC+ IA D+ GCC+LQ C + R+RL
Sbjct: 327 HAIFVILACFRLFPLH-CRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRL 385
Query: 332 VAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERC 391
+ E IANAL L +CYGNYVVQ+++ L + +L+RQL G+Y + NKYGS+ V++
Sbjct: 386 IMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQK- 444
Query: 392 LLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSK 434
LL+ S I+I+LLR + LL+ PFGNYVIQ+A VSK
Sbjct: 445 LLKLRWIDSRVIVIDLLRE--IDTLLLDPFGNYVIQTAWFVSK 485
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 136 NQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELM 195
N++L D+ +R L GN LA+++YG +Q+ + L + +I ++++ + L+
Sbjct: 414 NRYLIDAL----VRQLIGNYAHLARNKYGSHAVQKLL-KLRWIDSRVIVIDLLREIDTLL 468
Query: 196 IDPFGNYVVQKLVELCSEEQR 216
+DPFGNYV+Q + ++ R
Sbjct: 469 LDPFGNYVIQTAWFVSKDDVR 489
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 154/288 (53%), Gaps = 9/288 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G+++ + DQYG R +Q+ + + EE IF E++ LM D FGNYV+QK
Sbjct: 662 LSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKF 721
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + +QR + +T ++ + L +G R + K LE + QQ +V L
Sbjct: 722 FEHGTTKQRKELAEQVTG---HVLALSLQMYGCRVIQKALEVVELEQQARMV-KELDGSV 777
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ D NG++VIQ C++ + +++++ ++T GC V+Q +E+ +
Sbjct: 778 MKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIE 837
Query: 328 RERLVAEIIANAL-LLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+R++ E I +++ LA+D YGNYV+QH++ P + ++ +L G V S K+ SN
Sbjct: 838 TQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASN 897
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + ++ PFGNYV+Q L
Sbjct: 898 VVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVL 945
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 134/253 (52%), Gaps = 11/253 (4%)
Query: 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCS 212
G+++AL+ YGCR +Q+ + + E+ + E+ V + + D GN+V+QK +E
Sbjct: 739 GHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQNGNHVIQKCIERLP 798
Query: 213 EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK 272
++ I ++++ +++ + + +G R + ++LE++ + + +++ + TL +
Sbjct: 799 QDW---IQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQ 855
Query: 273 DTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLV 332
D G+YVIQ+ ++H + ++N++A ++ K V++ C+ + +R+ LV
Sbjct: 856 DQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLV 915
Query: 333 AEIIA----NALLLA--EDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
E++ N L A +D +GNYVVQ +L Q A +L +++ H + YG +
Sbjct: 916 NEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKH 975
Query: 387 VVERC--LLESGE 397
+V R L+ +GE
Sbjct: 976 IVARVEKLITTGE 988
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Query: 239 GIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNE 298
G A LLE N + SL L+ + + + D G IQ ++ + E+ + E
Sbjct: 641 GSTAEASLLEGFKNNKTRSLELSEIVGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPE 700
Query: 299 VADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLAL 358
+ + TD G V+Q E+ QR+ L ++ + L L+ YG V+Q L +
Sbjct: 701 ILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEV 760
Query: 359 RVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLM 418
+ A ++++L+G + ++ G++V+++C +E + + II V L
Sbjct: 761 VELEQQARMVKELDGSVMKCVHDQNGNHVIQKC-IERLPQDWIQFIISSFYG-KVLALST 818
Query: 419 HPFGNYVIQSAL 430
HP+G VIQ L
Sbjct: 819 HPYGCRVIQRVL 830
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE------LMIDPFGN 201
+ L G IV +++ ++ +++ ++ EE +++ E++ E +M DPFGN
Sbjct: 879 INKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGN 938
Query: 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLA 261
YVVQK++E C ++ IL + L R H + V KL+ +S LA
Sbjct: 939 YVVQKVLETCDDQSLALILSRIKVHLNALKRYTYGKHIVARVEKLITTGERRIGLSSSLA 998
Query: 262 A 262
A
Sbjct: 999 A 999
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 158/309 (51%), Gaps = 21/309 (6%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L D+ G+IV + DQ+G R +Q+ + + EE +F E++ C+LM D FGNYV+QK
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + QR + L Q+V + L +G R + K L+ + Q++ L L
Sbjct: 590 FEYGNSTQRKELADQLMG---QIVPLSLQMYGCRVIQKALDVIEPDQRVRLA-RELDGQV 645
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++VIQ C+++ + ++L ++ GC V+Q +E
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 328 RERLVA-EIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ R + EI+ + +L++D YGNYV QH+L + + R+L GH V S +K+ SN
Sbjct: 706 QCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASN 765
Query: 387 VVERCLLESGEEQSTRIIIELLRSPNVS-----MLLMHPFGNYVIQSAL----------L 431
V+E+C LE G +II+ + P+ S M++ +GNYV+Q L
Sbjct: 766 VIEKC-LEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTL 824
Query: 432 VSKVRLFSS 440
S+VR+ +S
Sbjct: 825 FSRVRMHAS 833
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
LE L + + L+ + V + D +G IQ +++ E+ + E+ +
Sbjct: 516 FLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACK 575
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q EY QR+ L +++ + L+ YG V+Q L + P
Sbjct: 576 LMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRV 635
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
L R+L+G + ++ G++V+++C +E+ ++ R VS L MHP+G V
Sbjct: 636 RLARELDGQVMRCVRDQNGNHVIQKC-IENIPADKVGFMLYAFRG-QVSSLSMHPYGCRV 693
Query: 426 IQSAL 430
IQ L
Sbjct: 694 IQRLL 698
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Query: 272 KDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERL 331
+ NG + + + S + ++ L+++ + + D+ G +Q +E K ++ +
Sbjct: 506 EGANGPRLCNFLEELKSGKGRRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAV 565
Query: 332 VAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERC 391
EI+ +A L D +GNYV+Q L QL G V S YG V+++
Sbjct: 566 FREILPHACKLMTDVFGNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKA 625
Query: 392 LLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
L +Q R+ EL V + GN+VIQ +
Sbjct: 626 LDVIEPDQRVRLAREL--DGQVMRCVRDQNGNHVIQKCI 662
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 9/292 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L D+ G +V + DQ+G R +Q+ + EE +F EV+ + +LM D FGNYV+QK
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
+E + QR ++ L Q+V + L +G R + K LE + Q+ L+ L
Sbjct: 686 IEHGTPAQREELVKQLAG---QMVSLSLQMYGCRVIQKALEVIDVDQKTELI-RELDGNV 741
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY-SKGA 326
+ +D NG++VIQ C++ +++ ++T GC V+Q +E+ S
Sbjct: 742 LKCVRDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDE 801
Query: 327 QRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ ++ EI+ +A LA D YGNYV QH+L P ++ +L G+ V S +KY SN
Sbjct: 802 ETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASN 861
Query: 387 VVERCLLESGEEQSTRIIIELLRSP----NVSMLLMHPFGNYVIQSALLVSK 434
VVE+CL + + +I E++ ++ ++ F NYV+Q L +SK
Sbjct: 862 VVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISK 913
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 2/185 (1%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
L+ L +P L L+ + V + D +G IQ ++H S E+ + +EV
Sbjct: 612 FLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASK 671
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q +E+ AQRE LV ++ + L+ YG V+Q L +
Sbjct: 672 LMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKT 731
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
L+R+L+G+ + ++ G++V+++C +ES +I R V+ L HP+G V
Sbjct: 732 ELIRELDGNVLKCVRDQNGNHVIQKC-IESMPAGRIGFVIAAFRG-QVATLSTHPYGCRV 789
Query: 426 IQSAL 430
IQ L
Sbjct: 790 IQRIL 794
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 156/288 (54%), Gaps = 9/288 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ LM D FGNYV+QK
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L ++ ++ + L +G R + K +E + Q+I +V L
Sbjct: 692 FEHGLPPQRRELADKLFDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHV 747
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ N ++T GC V+Q +E+
Sbjct: 748 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPD 807
Query: 328 RE-RLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ +++ EI++ +LA+D YGNYV+QH+L P ++++L G V S K+ SN
Sbjct: 808 TQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 867
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 868 VVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 915
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 2/185 (1%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + LA + V + D G IQ ++ + ++ + E+ +
Sbjct: 618 MLEEFKSNKTRGFELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALA 677
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR L ++ N L L+ YG V+Q + +
Sbjct: 678 LMTDVFGNYVIQKFFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 737
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C +E E++ II NV L HP+G V
Sbjct: 738 KMVKELDGHVMRCVRDQNGNHVVQKC-IECVPEENIEFIISTFFG-NVVTLSTHPYGCRV 795
Query: 426 IQSAL 430
IQ L
Sbjct: 796 IQRVL 800
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE------LMIDPFGN 201
+++L G IV +++ ++ +++ ++ EE E + E++ E +M D F N
Sbjct: 849 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFAN 908
Query: 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKL---------LENLTN 252
YVVQK++E C ++QR IL + L + H + V KL L++LT
Sbjct: 909 YVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQSLTQ 968
Query: 253 PQ 254
PQ
Sbjct: 969 PQ 970
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +M+F E++
Sbjct: 707 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQA 766
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 767 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 823
Query: 251 TNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
++ QQ IS ++ L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 824 SSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH 883
Query: 310 KSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLR 369
GC V+Q +E+ Q ++ E+ + L +D YGNYV+QH+L P+ + ++
Sbjct: 884 PYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNY 424
++ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 425 VIQSAL 430
V+Q +
Sbjct: 1004 VVQKMI 1009
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 134/273 (49%), Gaps = 24/273 (8%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVE 186
N +Q F+ SL +RG+++ LA YGCR +Q+ + S+ ++ I + E
Sbjct: 777 NYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKE 836
Query: 187 VIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVL 244
+ V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R +
Sbjct: 837 LDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQ 891
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
++LE+ T Q + +L L L +D G+YVIQ+ ++H ED +++E+
Sbjct: 892 RILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVL 950
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEII-------ANALLLAEDCYGNYVVQHLLA 357
++ K V++ CV ++ A+R L+ E+ + + +D Y NYVVQ ++
Sbjct: 951 ALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMID 1010
Query: 358 LRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
+ P ++ ++ H + YG +++ +
Sbjct: 1011 MAEPAQRKIIMHKIRPHITTLRKYTYGKHILAK 1043
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+G + L+ YGCR +QR + E+ I E+ +L+ D +GNYV+Q ++E
Sbjct: 873 FKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 932
Query: 211 CSEEQRTRIL-------LMLTNDDF--QLVRICLNTHGIRA------------------- 242
E +++I+ L L+ F +V C+ TH RA
Sbjct: 933 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV-THASRAERALLIDEVCCQNDGPHSA 991
Query: 243 ------------VLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHF 287
V++ + ++ P Q +++ +RP TL K T G +++ K++
Sbjct: 992 LYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 156/288 (54%), Gaps = 9/288 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ + LM D FGNYV+QK
Sbjct: 628 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVFGNYVIQKF 687
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L + ++ + L +G R + K +E + Q+I +V L
Sbjct: 688 FEHGLPPQRRELAEKLFD---HVLPLSLQMYGCRVIQKAIEVVDLDQKIKMV-KELDGHV 743
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ + ++T GC V+Q +E+
Sbjct: 744 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHDPD 803
Query: 328 RE-RLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ +++ EI++ +LA+D YGNYVVQH+L P ++++L G V S K+ SN
Sbjct: 804 TQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 863
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 864 VVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 911
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 288 SHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCY 347
S++ + L+E+A + ++D+ G +Q +E + ++ + EI+ AL+L D +
Sbjct: 620 SNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDVF 679
Query: 348 GNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIEL 407
GNYV+Q +P L +L H + S YG V+++ + +Q +++ EL
Sbjct: 680 GNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKEL 739
Query: 408 LRSPNVSMLLMHPFGNYVIQSAL 430
+V + GN+V+Q +
Sbjct: 740 --DGHVMRCVRDQNGNHVVQKCI 760
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 2/185 (1%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + L+ + V + D G IQ ++ + ++ + E+
Sbjct: 614 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALV 673
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR L ++ + L L+ YG V+Q + +
Sbjct: 674 LMTDVFGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKI 733
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C +E E++ II +V L HP+G V
Sbjct: 734 KMVKELDGHVMRCVRDQNGNHVVQKC-IECVPEENIEFIISTFFG-HVVTLSTHPYGCRV 791
Query: 426 IQSAL 430
IQ L
Sbjct: 792 IQRVL 796
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 15/122 (12%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE------LMIDPFGN 201
+++L G IV +++ ++ +++ ++ EE E++ E++ E +M D F N
Sbjct: 845 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFAN 904
Query: 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKL---------LENLTN 252
YVVQK++E C ++QR IL + L + H + + KL L++LT
Sbjct: 905 YVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQSLTQ 964
Query: 253 PQ 254
PQ
Sbjct: 965 PQ 966
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 156/288 (54%), Gaps = 9/288 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L ++ G++V + DQYG R +Q+ + + +E M++ E++ + LM D FGNYV+QK
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKF 683
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E QR + L ++ ++ + L +G R + K +E + Q+I +V L
Sbjct: 684 FEHGLPPQRRELGEKLIDN---VLPLSLQMYGCRVIQKAIEVVDLDQKIQMV-KELDGHV 739
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ +D NG++V+Q C++ E+ +++++ + ++T GC V+Q +E+
Sbjct: 740 MRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPD 799
Query: 328 RE-RLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+ +++ EI++ +L +D YGNYVVQH+L P ++++L G V S K+ SN
Sbjct: 800 TQSKVMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASN 859
Query: 387 VVERCLLESGEEQSTRIIIELLRSPN----VSMLLMHPFGNYVIQSAL 430
VVE+CL G E+ ++ E+L + + + ++ F NYV+Q L
Sbjct: 860 VVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 907
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 132/269 (49%), Gaps = 14/269 (5%)
Query: 154 NIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSE 213
N++ L+ YGCR +Q+ + + ++ + E+ V + D GN+VVQK +E E
Sbjct: 702 NVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPE 761
Query: 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKD 273
E I +++ +V + + +G R + ++LE+ NP S V+ + LT+D
Sbjct: 762 EN---IEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQD 818
Query: 274 TNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVA 333
G+YV+Q+ ++H ++ ++ E+A ++ K V++ C+ + +RE LV
Sbjct: 819 QYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVN 878
Query: 334 EIIANA------LLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
E++ + +D + NYVVQ +L Q +L +++ H + YG ++
Sbjct: 879 EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHI 938
Query: 388 VERC--LLESGEEQSTRIIIELLRSPNVS 414
V R L+ +GE R+ ++ L P V+
Sbjct: 939 VARVEKLVAAGER---RMALQSLPQPLVA 964
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 2/185 (1%)
Query: 246 LLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+LE + + L+ + V + D G IQ ++ + ++ + E+
Sbjct: 610 MLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALA 669
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITA 365
+ TD G V+Q E+ QR L ++I N L L+ YG V+Q + +
Sbjct: 670 LMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKI 729
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYV 425
++++L+GH + ++ G++VV++C +E E++ II +V L HP+G V
Sbjct: 730 QMVKELDGHVMRCVRDQNGNHVVQKC-IECVPEENIEFIISTFFG-HVVTLSTHPYGCRV 787
Query: 426 IQSAL 430
IQ L
Sbjct: 788 IQRVL 792
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE------LMIDPFGN 201
+++L G IV +++ ++ +++ ++ EE E++ E++ E +M D F N
Sbjct: 841 IKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFAN 900
Query: 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLL 247
YVVQK++E C ++QR IL + L + H + V KL+
Sbjct: 901 YVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLV 946
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 163/306 (53%), Gaps = 25/306 (8%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L+D+ G+ + KDQ+G R +QR +++ P E E+IF E+ D EL D FGNYV+QK
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 208 VELCSEEQRTRILLMLTNDDFQ--LVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRP 265
E S+ Q+ ++ D F+ + ++ L + R + K LE + + Q+I LVL L
Sbjct: 596 FEFGSKIQKNTLV-----DQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVL-ELSD 649
Query: 266 GAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKG 325
+ + KD NG++VIQ ++ E ++L+ + + Y ++T GC V+Q +E+
Sbjct: 650 SVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSS 709
Query: 326 AQRERLVAEIIANALLLAEDCYGNYVVQHLLA------LRVPQITASLLRQLEGHYVSFS 379
+E ++ E+ L +D YGNYV+Q++L + I ++ + + V +S
Sbjct: 710 EDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYS 769
Query: 380 CNKYGSNVVERCLLESGEEQSTRIIIELL-RSPNVS--------MLLM--HPFGNYVIQS 428
+K+ SNVVE+ +L + Q II ++L R N + M+LM F NYVIQ
Sbjct: 770 KHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQK 829
Query: 429 ALLVSK 434
+ VS+
Sbjct: 830 LVNVSE 835
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 166/306 (54%), Gaps = 13/306 (4%)
Query: 135 RNQWLQD----SFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDR 190
R++ L+D F LRDL G+IV ++DQ+G R +Q+ + E +++F E++
Sbjct: 707 RSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQA 766
Query: 191 VCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENL 250
+LM D FGNYV+QK E S +Q+ L + T ++ + L +G R + K LE++
Sbjct: 767 AYQLMTDVFGNYVIQKFFEFGSLDQK---LALATRIRGHVLPLALQMYGCRVIQKALESI 823
Query: 251 TNPQQ-ISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATD 309
++ QQ IS ++ L + KD NG++V+Q C++ + +++++ + ++T
Sbjct: 824 SSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTH 883
Query: 310 KSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLR 369
GC V+Q +E+ Q ++ E+ + L +D YGNYV+QH+L P+ + ++
Sbjct: 884 PYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS 943
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELL---RSPNVSMLLM--HPFGNY 424
++ G ++ S +K+ SNVVE+C+ + + +I E+ P+ ++ M + NY
Sbjct: 944 EIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANY 1003
Query: 425 VIQSAL 430
V+Q +
Sbjct: 1004 VVQKMI 1009
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 127/251 (50%), Gaps = 17/251 (6%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG+++ LA YGCR +Q+ + S+ ++ I + E+ V + + D GN+VVQK +
Sbjct: 799 IRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCI 858
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ T Q + +L L
Sbjct: 859 E-CVQPQSLQFII----DAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP-ILEELHQH 912
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED +++E+ ++ K V++ CV ++ A
Sbjct: 913 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 972
Query: 327 QRERLVAEII-------ANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFS 379
+R L+ E+ + + +D Y NYVVQ ++ + P ++ ++ H +
Sbjct: 973 ERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLR 1032
Query: 380 CNKYGSNVVER 390
YG +++ +
Sbjct: 1033 KYTYGKHILAK 1043
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 41/177 (23%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+G + L+ YGCR +QR + E+ I E+ +L+ D +GNYV+Q ++E
Sbjct: 873 FKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 932
Query: 211 CSEEQRTRIL-------LMLTNDDF--QLVRICLNTHGIRA------------------- 242
E +++I+ L L+ F +V C+ TH RA
Sbjct: 933 GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV-THASRAERALLIDEVCCQNDGPHSA 991
Query: 243 ------------VLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHF 287
V++ + ++ P Q +++ +RP TL K T G +++ K++
Sbjct: 992 LYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 1048
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 148 bits (374), Expect = 8e-35, Method: Composition-based stats.
Identities = 85/289 (29%), Positives = 153/289 (52%), Gaps = 6/289 (2%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LRDL +IV ++DQ+G R +Q+ + E +M+F E++ LM D FGNYV+QK
Sbjct: 1109 LRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYVIQKF 1168
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E + EQ+ + + + QL L +G R + K LE+++ P+Q ++ L
Sbjct: 1169 FEFGTPEQKNTLGMQVKGHVLQLA---LQMYGCRVIQKALESIS-PEQQQEIVHELDGHV 1224
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ ++++N Y ++T GC V+Q +E+ Q
Sbjct: 1225 LKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQ 1284
Query: 328 RERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
++ E+ + L +D YGNYV+QH+L + + L+ + G + S +K+ SNV
Sbjct: 1285 TTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNV 1344
Query: 388 VERCLLESGEEQSTRIIIEL--LRSPNVSMLLMHPFGNYVIQSALLVSK 434
VE+C+ + + T +I E+ + +++ + NYV+Q + VS+
Sbjct: 1345 VEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSE 1393
Score = 102 bits (253), Expect = 9e-21, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 125/243 (51%), Gaps = 12/243 (4%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
++G+++ LA YGCR +Q+ + S+ E+ + I E+ V + + D GN+VVQK +E
Sbjct: 1184 VKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIE- 1242
Query: 211 CSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPGAV 268
C + + L + F+ L+TH G R + ++LE+ T +Q + +L L
Sbjct: 1243 CVDP----VALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCT-AEQTTPILDELHEHTE 1297
Query: 269 TLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQR 328
L +D G+YVIQ+ ++H ED L+N V ++ K V++ CV ++ +R
Sbjct: 1298 QLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHATRGER 1357
Query: 329 ERLVAEIIA---NAL-LLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYG 384
L+ E+ NAL ++ +D Y NYVVQ ++ + P L+ ++ H + YG
Sbjct: 1358 TGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYG 1417
Query: 385 SNV 387
++
Sbjct: 1418 KHI 1420
Score = 69.7 bits (169), Expect = 5e-11, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 2/186 (1%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L L V ++D +G IQ ++ + + + + +E+ Y
Sbjct: 1094 RLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAY 1153
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQIT 364
+ TD G V+Q E+ Q+ L ++ + L LA YG V+Q L P+
Sbjct: 1154 SLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQ 1213
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++ +L+GH + ++ G++VV++C +E + + + II + V L HP+G
Sbjct: 1214 QEIVHELDGHVLKCVKDQNGNHVVQKC-IECVDPVALQFIINAFKG-QVYSLSTHPYGCR 1271
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1272 VIQRIL 1277
Score = 39.7 bits (91), Expect = 0.050, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 61/132 (46%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L +L + L +DQYG +Q + +E+ ++ V +V L F + VV+K
Sbjct: 1289 LDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKC 1348
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
V + +RT ++ + + + + + V++ + +++ P Q+ ++ +RP
Sbjct: 1349 VTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKKLMTKIRPHM 1408
Query: 268 VTLTKDTNGHYV 279
L K T G ++
Sbjct: 1409 AALRKYTYGKHI 1420
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 11/292 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVC-ELMIDPFGNYVVQK 206
L D+ GN+V + DQ+G R +Q+ +++ +EE E +F E+ C +LM+D FGNYVVQK
Sbjct: 394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQK 453
Query: 207 LVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPG 266
E +E+Q+ +L + F L L +G R V K +E ++ Q+ L+ L
Sbjct: 454 YFEFGNEKQKQILLSQIKGHVFSL---SLQMYGCRVVQKAIEYISPEHQVQLI-QELDGH 509
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ D NG++VIQ ++ +++L + + ++ GC V+Q +E+ +
Sbjct: 510 VLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCH-S 568
Query: 327 QRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
+R+ ++ E++ + L L +D YGNYVVQH+L + + H + SC+K+ SN
Sbjct: 569 ERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASN 628
Query: 387 VVERCLLESGEEQSTRIIIELL--RSPNVSMLLM---HPFGNYVIQSALLVS 433
VVERC+ + RI+ +++ ++ N S+L++ + NYVIQ L S
Sbjct: 629 VVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLLDAS 680
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 159/293 (54%), Gaps = 9/293 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ L + ++ + L +G R + K LE + + QQ I+ ++ L
Sbjct: 907 FEFGSHEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGH 963
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 964 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPD 1023
Query: 327 QRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q ++ E+ + L +D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1024 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1083
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1084 VVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1136
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 6/189 (3%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAY 891
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVP--- 361
+ D G V+Q E+ Q+ L I + L LA YG V+Q L +P
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEF-IPSDQ 950
Query: 362 QITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPF 421
Q+ ++R+L+GH + ++ G++VV++C +E + QS + II+ + V L HP+
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKC-IECVQPQSLQFIIDAFKG-QVFALSTHPY 1008
Query: 422 GNYVIQSAL 430
G VIQ L
Sbjct: 1009 GCRVIQRIL 1017
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 53/252 (21%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVEVIDRVCELMIDPFGNYVVQKLV 208
+RG++++LA YGCR +Q+ + +P ++ I + E+ V + + D GN+VVQK +
Sbjct: 922 IRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCI 981
Query: 209 ELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKLLENLTNPQQISLVLAALRPG 266
E C + Q + ++ D F+ L+TH G R + ++LE+ P Q +L L
Sbjct: 982 E-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRILEHCL-PDQTLPILEELHQH 1035
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
L +D G+YVIQ+ ++H ED ++ E+ N ++ K V++ CV ++
Sbjct: 1036 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRT 1095
Query: 327 QRERLVAEI------------------IANALL-------------------------LA 343
+R L+ E+ AN ++ L
Sbjct: 1096 ERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLR 1155
Query: 344 EDCYGNYVVQHL 355
+ YG +++ L
Sbjct: 1156 KYTYGKHILAKL 1167
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 157/292 (53%), Gaps = 9/292 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ L + ++ + L +G R + K LE + + QQ +V L
Sbjct: 906 FEFGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV-RELDGHV 961
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 962 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 328 RERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
++ E+ + L +D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1133
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 22/271 (8%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI 188
N +Q F+ SL +RG++++LA YGCR +Q+ + +P ++ + E+
Sbjct: 899 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELD 958
Query: 189 DRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKL 246
V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R + ++
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRI 1013
Query: 247 LENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306
LE+ P Q +L L L +D G+YVIQ+ ++H ED ++ E+ N +
Sbjct: 1014 LEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 1072
Query: 307 ATDKSGCCVLQHCVEYSKGAQRERLVAEIIA------NALL-LAEDCYGNYVVQHLLALR 359
+ K V++ CV ++ +R L+ E+ +AL + +D Y NYVVQ ++ +
Sbjct: 1073 SQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVA 1132
Query: 360 VPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
P ++ ++ H + YG +++ +
Sbjct: 1133 EPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ L I + L LA YG V+Q L
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C +E + QS + II+ + V L HP+G
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKC-IECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 1008
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1009 VIQRIL 1014
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 158/293 (53%), Gaps = 9/293 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 847 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 906
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQ-ISLVLAALRPG 266
E S EQ+ L + ++ + L +G R + K LE + QQ I+ ++ L
Sbjct: 907 FEFGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGH 963
Query: 267 AVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA 326
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+
Sbjct: 964 VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPE 1023
Query: 327 QRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386
Q ++ E+ + L +D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SN
Sbjct: 1024 QTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASN 1083
Query: 387 VVERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VVE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1084 VVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1136
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 136/273 (49%), Gaps = 24/273 (8%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEE--IEMIFVE 186
N +Q F+ SL +RG++++LA YGCR +Q+ + +P ++ I + E
Sbjct: 900 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRE 959
Query: 187 VIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVL 244
+ V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R +
Sbjct: 960 LDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQ 1014
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
++LE+ P+Q +L L L +D G+YVIQ+ ++H ED ++ E+ N
Sbjct: 1015 RILEHCL-PEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVL 1073
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIA------NALL-LAEDCYGNYVVQHLLA 357
++ K V++ CV ++ +R L+ E+ +AL + +D Y NYVVQ ++
Sbjct: 1074 VLSQHKFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMID 1133
Query: 358 LRVPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
+ P ++ ++ H + YG +++ +
Sbjct: 1134 VAEPAQRKIVMHKIRPHIATLRKYTYGKHILAK 1166
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 4/188 (2%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 832 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 891
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVP--Q 362
+ D G V+Q E+ Q+ L I + L LA YG V+Q L P Q
Sbjct: 892 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQ 951
Query: 363 ITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFG 422
+ ++R+L+GH + ++ G++VV++C +E + QS + II+ + V L HP+G
Sbjct: 952 VINEMVRELDGHVLKCVKDQNGNHVVQKC-IECVQPQSLQFIIDAFKG-QVFALSTHPYG 1009
Query: 423 NYVIQSAL 430
VIQ L
Sbjct: 1010 CRVIQRIL 1017
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 41/177 (23%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
+G + AL+ YGCR +QR + E+ I E+ +L+ D +GNYV+Q ++E
Sbjct: 996 FKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH 1055
Query: 211 CSEEQRTRIL-------LMLTNDDF--QLVRICLNTHGIRA------------------- 242
E +++I+ L+L+ F +V C+ TH R
Sbjct: 1056 GRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCV-THASRTERAMLIDEVCTMNDGPHSA 1114
Query: 243 ------------VLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHF 287
V++ + ++ P Q +V+ +RP TL K T G +++ K++
Sbjct: 1115 LYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYY 1171
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 157/292 (53%), Gaps = 9/292 (3%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
LR++ G+I+ ++DQ+G R +Q + E +++F E++ +LM+D FGNYV+QK
Sbjct: 846 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 905
Query: 208 VELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA 267
E S EQ+ L + ++ + L +G R + K LE + + QQ +V L
Sbjct: 906 FEFGSLEQK---LALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRE-LDGHV 961
Query: 268 VTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ 327
+ KD NG++V+Q C++ + +++++ + ++T GC V+Q +E+ Q
Sbjct: 962 LKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQ 1021
Query: 328 RERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
++ E+ + L +D YGNYV+QH+L P+ + ++ ++ G+ + S +K+ SNV
Sbjct: 1022 TLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNV 1081
Query: 388 VERCLLESGEEQSTRIIIELLR---SPNVSMLLM--HPFGNYVIQSALLVSK 434
VE+C+ + + +I E+ P+ ++ M + NYV+Q + V++
Sbjct: 1082 VEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAE 1133
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 22/271 (8%)
Query: 136 NQWLQDSFDCSSLRD-------LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVI 188
N +Q F+ SL +RG++++LA YGCR +Q+ + +P ++ + E+
Sbjct: 899 NYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELD 958
Query: 189 DRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH--GIRAVLKL 246
V + + D GN+VVQK +E C + Q + ++ D F+ L+TH G R + ++
Sbjct: 959 GHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFII----DAFKGQVFALSTHPYGCRVIQRI 1013
Query: 247 LENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306
LE+ P Q +L L L +D G+YVIQ+ ++H ED ++ E+ N +
Sbjct: 1014 LEHCL-PDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 1072
Query: 307 ATDKSGCCVLQHCVEYSKGAQRERLVAEIIA------NALL-LAEDCYGNYVVQHLLALR 359
+ K V++ CV ++ +R L+ E+ +AL + +D Y NYVVQ ++ +
Sbjct: 1073 SQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVA 1132
Query: 360 VPQITASLLRQLEGHYVSFSCNKYGSNVVER 390
P ++ ++ H + YG +++ +
Sbjct: 1133 EPGQRKIVMHKIRPHIATLRKYTYGKHILAK 1163
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 2/186 (1%)
Query: 245 KLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCY 304
+LLE+ N + +L L + + ++D +G IQ ++ + + + + NE+ Y
Sbjct: 831 RLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAY 890
Query: 305 GIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQIT 364
+ D G V+Q E+ Q+ L I + L LA YG V+Q L
Sbjct: 891 QLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQ 950
Query: 365 ASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNY 424
++R+L+GH + ++ G++VV++C +E + QS + II+ + V L HP+G
Sbjct: 951 NEMVRELDGHVLKCVKDQNGNHVVQKC-IECVQPQSLQFIIDAFKG-QVFALSTHPYGCR 1008
Query: 425 VIQSAL 430
VIQ L
Sbjct: 1009 VIQRIL 1014
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 165/325 (50%), Gaps = 46/325 (14%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEI--EMIFVEVIDRVCELMIDPFGNYVVQ 205
LRDL + + LA DQ+GCR LQ+ + + + + ++++ ++ +L++DPFGNY+VQ
Sbjct: 210 LRDL--DYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQ 267
Query: 206 KLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALR- 264
KL + + EQ+T ++ + + FQ I +N +G R++ K+++ + N QI L++
Sbjct: 268 KLCDYLTAEQKTLLIQTIYPNVFQ---ISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQ 324
Query: 265 -----PGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD--NCYGIATDKSGCCVLQ 317
VTL D NG++VIQ C+ FS ++++ + + N I+T K GCCVLQ
Sbjct: 325 EFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQ 384
Query: 318 HCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQ--ITASLLRQLEGHY 375
+ Q ++ +I+ L D +GNY++Q LL ++ + A L +L
Sbjct: 385 KLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNEL 444
Query: 376 VSFSCNKYGSNVVERCLLE-------------SGEEQSTRI---------------IIEL 407
SC K+ SNVVE+ + + G Q T + I++
Sbjct: 445 CQLSCLKFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDI 504
Query: 408 LRSPNVSMLLMHPFGNYVIQSALLV 432
+ N+++L+ FGNY +Q+ L V
Sbjct: 505 F-TVNLNVLIRDNFGNYALQTLLDV 528
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 101/222 (45%), Gaps = 12/222 (5%)
Query: 227 DFQLVRICLNTHGIRAVLKLLENLTNPQQI-SLVLAALRPGAVTLTKDTNGHYVIQYCVK 285
D +++ + G R + K LE + + L+ ++P + L D G+Y++Q
Sbjct: 212 DLDYIKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCD 271
Query: 286 HFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAE-------IIAN 338
+ + E L+ + N + I+ ++ G LQ ++ + L+ + I
Sbjct: 272 YLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQ 331
Query: 339 ALLLAEDCYGNYVVQHLLALRVPQITASLLRQL--EGHYVSFSCNKYGSNVVERCLLESG 396
+ L D GN+V+Q + P ++ + + + ++ S +K+G V+++ L
Sbjct: 332 VVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCT 391
Query: 397 EEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVSKVRLF 438
+Q +I +++++ + L+ FGNY+IQ L + ++ +
Sbjct: 392 LQQIFKISVKIVQF--LPGLINDQFGNYIIQFLLDIKELDFY 431
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/368 (25%), Positives = 163/368 (44%), Gaps = 67/368 (18%)
Query: 117 NELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTM-SSL 175
N S N + + SL N ++ S + D G+++ A D+ GC+ L++ + SL
Sbjct: 157 NSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLD-SGDLMKFAVDKTGCQFLEKAVKGSL 215
Query: 176 PKEEIEMIFVEVI---DRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDD----- 227
+ +F +VI D +L + FGNY+VQ ++ + + TNDD
Sbjct: 216 TSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGIS----------LATNDDGYTKR 265
Query: 228 ---------FQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA-VTLTKDTNGH 277
Q+ +CL+ R + L+N+ LV A R + + D N +
Sbjct: 266 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNAN 325
Query: 278 YVIQYCVKHFSHEDTKYLLNEVA--DNCYGIATDKSGCCVLQHCVE----------YSKG 325
+VIQ V ++ +++++ VA ++ I +DK GC V+Q +E +
Sbjct: 326 HVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSA 385
Query: 326 AQR------ERLVAEIIANALLLAEDCYGNYVVQHLLA------LRVPQITASLLRQLEG 373
AQ +RL+ + LA + Y NY++QH+++ R I L+R L
Sbjct: 386 AQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNL-- 443
Query: 374 HYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRS----PN-----VSMLLMHPFGNY 424
+S S K+ S+VVE+ L + E ++ E+ P+ + +++ H FGNY
Sbjct: 444 --LSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNY 501
Query: 425 VIQSALLV 432
V+Q L +
Sbjct: 502 VVQCMLTI 509
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)
Query: 117 NELSSVPRNQWMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMS-SL 175
N S N + + SL N ++ S + D G+++ A D+ GC+ L++ + SL
Sbjct: 155 NSRSFTRSNNVLPTWSLDSNGEMRSRLSLSEVLD-SGDLMKFAVDKTGCQFLEKAVKGSL 213
Query: 176 PKEEIEMIFVEVI---DRVCELMIDPFGNYVVQKLVELC----SEEQRTRILLMLTNDDF 228
+ +F +VI D +L + FGNY VQ+++ + ++ R +
Sbjct: 214 TSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLTTYDDDNIKRQEKLKNFISS 273
Query: 229 QLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA-VTLTKDTNGHYVIQYCVKHF 287
Q+ +CL+ R + L+N+ LV A R + + D N ++VIQ V
Sbjct: 274 QMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVI 333
Query: 288 SHEDTKYLLNEVA--DNCYGIATDKSGCCVLQHCVE----------YSKGAQR------E 329
++ +++++ VA ++ I DK GC V+Q +E + AQ +
Sbjct: 334 PLKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQ 393
Query: 330 RLVAEIIANALLLAEDCYGNYVVQHLLA------LRVPQITASLLRQLEGHYVSFSCNKY 383
RL+ + LA + Y NY++QH+++ R I L+R L +S S K+
Sbjct: 394 RLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNL----LSLSQEKF 449
Query: 384 GSNVVERCLLESGEEQSTRIIIELLR---------SPNVSMLLMHPFGNYVIQSALLV 432
S+VVE+ L + E ++ E+ + +++ H FGNYV+Q L +
Sbjct: 450 ASHVVEKAFLHAPMELLAEMMDEIFDGYMPHPGTGKDALDIMMFHQFGNYVVQCMLTI 507
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 21/216 (9%)
Query: 143 FDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNY 202
F+ S LR++R NI + Q EEIE+I ++D V EL D GN
Sbjct: 163 FEASKLREIRKNIDSGFYTQ---------------EEIEVIARSMLDDVAELSSDYLGNT 207
Query: 203 VVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAA 262
VVQK E CS+ + +L + L I ++ +G A K+++ + +Q+ L++
Sbjct: 208 VVQKFFEYCSDPIKEAMLERIAP---YLAAIGIHKNGTWAAQKIIDVASTEKQMDLIVKH 264
Query: 263 LRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY 322
LRP L D G+YV Q C++ F + +L +A +C I + G ++ C+E
Sbjct: 265 LRPYTALLYFDQFGNYVAQCCLR-FKYPKNTFLFEVMARHCCEIGQSRFGARAIRACLEN 323
Query: 323 SKGA--QRERLVAEIIANALLLAEDCYGNYVVQHLL 356
Q+ +VA II N+ LLA + G ++ LL
Sbjct: 324 ENATFEQQALVVASIIINSHLLATNSNGMLLLTWLL 359
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 334 EIIANALL-----LAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVV 388
E+IA ++L L+ D GN VVQ I ++L ++ + + +K G+
Sbjct: 186 EVIARSMLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGTWAA 245
Query: 389 ERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
++ + + E+ +I++ LR P ++L FGNYV Q L
Sbjct: 246 QKIIDVASTEKQMDLIVKHLR-PYTALLYFDQFGNYVAQCCL 286
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 7/213 (3%)
Query: 221 LMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVI 280
LM ++ D+ +V I N +G + + KL+ +++ + A +R +T D YV
Sbjct: 79 LMTSDCDYFMV-ITTNKNGSKTLQKLM-GMSDDMDVFFFEAIMRLFIHVMT-DKYASYVT 135
Query: 281 QYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCV-EYSKGAQRERLVAEIIANA 339
++ F + + + +++ +A D+ GC L + + R++L+ + NA
Sbjct: 136 IQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNA 195
Query: 340 LLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQ 399
LLL+ D YGN+VVQH+L LR + T ++ +L G+ V S KYGS +VER LLE+G+
Sbjct: 196 LLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVER-LLEAGDVP 254
Query: 400 STRIIIELL--RSPNVSMLLMHPFGNYVIQSAL 430
++++LL ++ + L +GN+V+ AL
Sbjct: 255 MATVVLDLLACKTEMLIRLARSEYGNFVVCKAL 287
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 117/254 (46%), Gaps = 35/254 (13%)
Query: 127 WMSSLSLKRNQWLQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVE 186
WM+SL + DC + + ++ G + LQ+ M +++++ F E
Sbjct: 75 WMASLM---------TSDCDYF-------MVITTNKNGSKTLQKLMGM--SDDMDVFFFE 116
Query: 187 VIDRV-CELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVR----ICLNTHGIR 241
I R+ +M D + +YV + + + +++R L D Q++R + + +G
Sbjct: 117 AIMRLFIHVMTDKYASYVTIQGMRVFQQDKRE-----LMYD--QILRYACFLAGDQYGCI 169
Query: 242 AVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVAD 301
A+ +++ +L +P +L + A+ L+ D G++V+Q+ +K T+ + +++
Sbjct: 170 ALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCG 229
Query: 302 NCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIA----NALLLAEDCYGNYVVQHLLA 357
C ++ K G +++ +E + +V +++A + LA YGN+VV L
Sbjct: 230 YCVELSFKKYGSYIVERLLE-AGDVPMATVVLDLLACKTEMLIRLARSEYGNFVVCKALE 288
Query: 358 LRVPQITASLLRQL 371
L +TA L L
Sbjct: 289 LTNEILTADLFYGL 302
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Query: 204 VQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAAL 263
VQ + +L + +T L+ ++ D+ L+ I N +G + + KLL + +L AA+
Sbjct: 69 VQMISKLDQRKLQTMASLLTSDPDYFLM-IARNMNGSKRIQKLLGKTDDVD--ALFAAAI 125
Query: 264 RPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYS 323
+ + D YV++ + F + K + + IA DK G L +
Sbjct: 126 LRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDKHGNLALNDIIT-- 183
Query: 324 KGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKY 383
A R +L I AL+L+ D YGN+V+Q +L L + +++ L GH+V S KY
Sbjct: 184 -DAYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKY 242
Query: 384 GSNVVERCLLESGEEQSTRIIIELLRSPNVSMLL---MHPFGNYVIQSALLVSK 434
GS VV+ LLE+ E S +++E L ML+ + +GN+++ AL V++
Sbjct: 243 GSYVVD-VLLETKE--SMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVTQ 293
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 4/187 (2%)
Query: 223 LTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQY 282
LT+D + I N +G +++ KL+ +++ + +A +R + + D YV
Sbjct: 80 LTSDSDYFMVITRNKNGSKSLQKLMR-MSDDMDVFFFVAIMRL-FIHVMIDKYASYVAIQ 137
Query: 283 CVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCV-EYSKGAQRERLVAEIIANALL 341
++ F + + + + + +A D+ GC L + E R+ L+ + NALL
Sbjct: 138 GMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALL 197
Query: 342 LAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQST 401
L+ D YGN+VVQH+L L + T ++ +L G+ V S KYGS +VER LLE +
Sbjct: 198 LSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVER-LLEVRDIPMA 256
Query: 402 RIIIELL 408
I+++LL
Sbjct: 257 TIVLDLL 263
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 103/220 (46%), Gaps = 9/220 (4%)
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+ + +++ G + LQ+ M ++ FV ++ +MID + +YV + + + +++
Sbjct: 88 MVITRNKNGSKSLQKLMRMSDDMDV-FFFVAIMRLFIHVMIDKYASYVAIQGMRIFKQDK 146
Query: 216 RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTN 275
R + + L R + +G A+ ++++ L +P ++ + A+ L+ D
Sbjct: 147 RELMYDHILRYALFLAR---DQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAY 203
Query: 276 GHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEI 335
G++V+Q+ +K T + +++ C ++ K G +++ +E + +V ++
Sbjct: 204 GNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLE-VRDIPMATIVLDL 262
Query: 336 IA----NALLLAEDCYGNYVVQHLLALRVPQITASLLRQL 371
+A + LA GN+VV LL L +TA L L
Sbjct: 263 LACKTEMLIRLARSENGNFVVCKLLELTNDILTADLFYSL 302
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 7/198 (3%)
Query: 177 KEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLN 236
+EE+E I + +D V +L D GN VVQKL + CS+ + +ML L +I ++
Sbjct: 764 QEEVEDIAINWLDEVSDLSSDHLGNTVVQKLFDYCSDPVKE---MMLERIAPHLAQIGIH 820
Query: 237 THGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLL 296
+G A K+++ + Q+ L+ L+P L D G+YV+Q C+K F ++
Sbjct: 821 KNGTWAAQKIVDVASTEAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLK-FGAPMNDFVF 879
Query: 297 NEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLV--AEIIANALLLAEDCYGNYVVQH 354
+ + + IA + G ++ C+E + +R++ A I ++ LA + G ++ +
Sbjct: 880 EAILNQFWVIAQSRYGSRAVRACLESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTY 939
Query: 355 LLA-LRVPQITASLLRQL 371
L+ + P I L R+
Sbjct: 940 LVENMNYPHIPILLTRRF 957
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 342 LAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQST 401
L+ D GN VVQ L + +L ++ H +K G+ ++ + + E
Sbjct: 781 LSSDHLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQM 840
Query: 402 RIIIELLRSPNVSMLLMHPFGNYVIQSAL 430
R+I + L+ P + +L FGNYV+Q+ L
Sbjct: 841 RLIAKHLQ-PYIPLLFADQFGNYVVQTCL 868
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 3/242 (1%)
Query: 194 LMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNP 253
LM D G ++++ + + R+ +LT+D + I G R V KLL +
Sbjct: 48 LMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDV 107
Query: 254 QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGC 313
+ AA+ + +T D YV + F K L + + +A D+ GC
Sbjct: 108 D--AFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 314 CVLQHCV-EYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLE 372
L + + R++L+ +++NAL L+ D GN+VVQH+L L + ++ L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 373 GHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLV 432
G + S KYGS +VE+ L + + + L + FGN+V+ AL
Sbjct: 226 GQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRF 285
Query: 433 SK 434
+K
Sbjct: 286 TK 287
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 139/316 (43%), Gaps = 38/316 (12%)
Query: 140 QDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPF 199
+D+FD LR+LR Q +SL E+E + + ++D++ EL D
Sbjct: 545 KDTFDAPKLRELRK---------------QFDSNSLSTIEMEQLAIVMLDQLPELSSDYL 589
Query: 200 GNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLV 259
GN V+QKL E S R +ML + L + ++ +G K+++ P+QI+LV
Sbjct: 590 GNTVIQKLFENSSNIIRD---IMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQINLV 646
Query: 260 LAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHC 319
+ + L D G+YVIQ +K F ++ V + + I ++ G ++ C
Sbjct: 647 TSGVSDYCTPLFNDQFGNYVIQGILK-FGFPWNSFIFESVLSHFWTIVQNRYGSRAVRAC 705
Query: 320 VEYSK---GAQRERLVAEIIANALLLAEDCYGNYVVQHLL-ALRVPQITASLLRQL-EGH 374
+E Q + + II + LA D G ++ LL +P L +L +
Sbjct: 706 LEADSIITQCQLLTITSLIIVLSPYLATDTNGTLLITWLLDTCTLPNKNLILCDKLVNKN 765
Query: 375 YVSFSCNKYGSNVVERCL-LESGEEQS---TRIIIELLRSPNVSMLLMHPF---GNY--- 424
V C+K GS V + L L GEE++ +II + P S ++ GNY
Sbjct: 766 LVKLCCHKLGSLTVLKILNLRGGEEEALSKNKIIHAIFDGPISSDSILFQILDEGNYGPT 825
Query: 425 ----VIQSALLVSKVR 436
V+ S +L + VR
Sbjct: 826 FIYKVLTSRILDNSVR 841
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 3/243 (1%)
Query: 194 LMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNP 253
LM D G ++++ + + R+ +LT+D + I G R V KLL +
Sbjct: 48 LMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDV 107
Query: 254 QQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGC 313
+ AA+ + +T D YV + F K L + + +A D+ GC
Sbjct: 108 D--AFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGC 165
Query: 314 CVLQHCV-EYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLE 372
L + + R++L+ + +NAL L+ D GN+VVQH+L L + ++ L
Sbjct: 166 IALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLY 225
Query: 373 GHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLV 432
G + S KYGS +VE+ L + + + L + FGN+V+ AL
Sbjct: 226 GQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALRF 285
Query: 433 SKV 435
+K+
Sbjct: 286 TKM 288
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 119/270 (44%), Gaps = 23/270 (8%)
Query: 143 FDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNY 202
FD LR+LR +I + A S L EIE + + ++D + EL D GN
Sbjct: 589 FDPPKLRELRKSIDSNA------------FSDL---EIEQLAIAMLDELPELSSDYLGNT 633
Query: 203 VVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAA 262
+VQKL E S+ + +ML L + ++ +G A K++ P+QI V
Sbjct: 634 IVQKLFEHSSDIIKD---IMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQG 690
Query: 263 LRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEY 322
++ L D G+YVIQ CV F +++ + N + I ++ G ++ C+E
Sbjct: 691 VKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARAVRACLEA 749
Query: 323 SKGAQRER---LVAEIIANALLLAEDCYGNYVVQHLLALRV-PQITASLLRQLEGHYVSF 378
E+ L A I+ A L+ + G +V L V P + L +L V
Sbjct: 750 HDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVEL 809
Query: 379 SCNKYGSNVVERCLLESGEEQSTRIIIELL 408
++ S + + L G++ + +II++ L
Sbjct: 810 CGHRLASLTILKVLNYRGDDNARKIILDSL 839
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 7/221 (3%)
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGH 277
+I LT + + N +G +A+ L +P L+ A+ L D G
Sbjct: 251 KIGSALTTTKRIFLHLATNQYGSQALRILFRR--SPSLDHLLFCAVDTNFFLLMSDKYGR 308
Query: 278 YVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIA 337
+I ++ + L + +A ++GC L + ++ +G R+ + +
Sbjct: 309 GLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYRDLIFECVAN 368
Query: 338 NALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGE 397
NA L+ D YG +VVQ++L L+ P T ++ +L G + + + GS VVE+CL
Sbjct: 369 NADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLKSDFA 428
Query: 398 EQSTRIIIELLRSPNVSMLLM--HPFGNYVIQSALLVSKVR 436
++E R + M FGN+V+QSAL V K +
Sbjct: 429 RDQ---VLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEK 466
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 97/229 (42%), Gaps = 10/229 (4%)
Query: 146 SSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQ 205
S+L + + LA +QYG + L+ P + ++F V LM D +G ++
Sbjct: 254 SALTTTKRIFLHLATNQYGSQALRILFRRSPSLD-HLLFCAVDTNFFLLMSDKYGRGLII 312
Query: 206 KLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRP 265
+ + ++ + + L R+ + VL+ + + L+ +
Sbjct: 313 PAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR----DLIFECVAN 368
Query: 266 GAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKG 325
A L+ D G +V+Q + + T + + + + +A ++ G V++ C++
Sbjct: 369 NADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVVEKCLK--SD 426
Query: 326 AQRERLVAEIIANA---LLLAEDCYGNYVVQHLLALRVPQITASLLRQL 371
R++++ E NA + + D +GN+VVQ L + + LLR+
Sbjct: 427 FARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEMRPLLREF 475
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 158 LAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRT 217
LA+ + GC L + + ++IF V + L DP+G +VVQ ++ L + T
Sbjct: 337 LARLETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATT 396
Query: 218 RILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGA---VTLTKDT 274
I L F R+ + G V K L++ Q VL R A V +T D
Sbjct: 397 AIAERLRGSFF---RLAMERQGSYVVEKCLKSDFARDQ---VLEEFRGNAKEWVRMTTDK 450
Query: 275 NGHYVIQYCVKHFSHEDTKYLLNEVAD 301
G++V+Q ++ ++ + LL E +
Sbjct: 451 FGNFVVQSALRVMKEKEMRPLLREFVE 477
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 26/288 (9%)
Query: 156 VALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQ 215
+ ++ DQ LQ+ + + + I +I ++ LM++ FGN++VQ+ E + Q
Sbjct: 367 IIVSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQ 426
Query: 216 -RTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDT 274
R ML N ++++ + G V K ++N+T +++++ VT+
Sbjct: 427 IRQMGSAMLGN----MLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDVTIMH-- 480
Query: 275 NGHYVIQYCVKHFSHEDTKY---LLNEVADNCYG----IATDKSGCCVLQHCVEYSKGAQ 327
HY K F + +Y ++N V + G +A ++G V+Q+ E
Sbjct: 481 --HYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKD 538
Query: 328 RERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNV 387
+ + EII + +A +GN+VVQH++ + ++ L V FS +++ S V
Sbjct: 539 KRECIEEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKV 598
Query: 388 VERCLLESGE--------EQSTRIIIELLRSPNVSMLLMHPFGNYVIQ 427
+E+ ++SG +Q T ++ R P + + +GNY+IQ
Sbjct: 599 IEKA-IKSGPKNFISLYLKQITNARVDRTRQPLID-IASDQYGNYLIQ 644
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/323 (21%), Positives = 132/323 (40%), Gaps = 61/323 (18%)
Query: 138 WLQDSFDCSSLRDLRGNIV--------ALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVID 189
+LQ SS D++ NIV L +++G +QR +I + ++
Sbjct: 378 FLQQKLKISSY-DMKQNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLG 436
Query: 190 RVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH-GIRAVLKLLE 248
+ +L DPFG +VVQK ++ +E+ I L + ++ F + + + H KL E
Sbjct: 437 NMLKLATDPFGCHVVQKAIDNVTED----IKLAMMDELFLTIDVTIMHHYACHVWQKLFE 492
Query: 249 NLTNPQQISL---VLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYG 305
+++ V ALR + NG V+Q ++ +D + + E+ + G
Sbjct: 493 TQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDG 552
Query: 306 IATDKSGCCVLQHCVEYSKGAQRERLV----------------AEIIANALL-------- 341
IA + G V+QH VE +G +R++ +++I A+
Sbjct: 553 IARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFIS 612
Query: 342 --------------------LAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381
+A D YGNY++Q ++ L P ++ ++ H VS +
Sbjct: 613 LYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGS 672
Query: 382 KYGSNVVERCLLESGEEQSTRII 404
KYG V + ++Q + +I
Sbjct: 673 KYGQKVAYLVEKWNSQKQVSSVI 695
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 20/252 (7%)
Query: 151 LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL 210
L+ ++ L+ D +G LQ+++ P+ + E+I+ + ++ +V QK E
Sbjct: 328 LKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQRHSCHVWQKFFET 387
Query: 211 CSEEQRTRILLMLTNDDF------QLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALR 264
R + L+ D F + +++ ++ G V + EN + + L +
Sbjct: 388 -----RRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRT-CLDEII 441
Query: 265 PGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSK 324
+ G++VIQ+ ++H S D + +LN + +T++ V++ +
Sbjct: 442 NNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCH 501
Query: 325 GAQRERLVAEIIA--NAL------LLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYV 376
+R V EI N L +A + YGNY+VQ+LL + P + L+ H V
Sbjct: 502 VTFFDRYVKEITTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLMAEHLKKHMV 561
Query: 377 SFSCNKYGSNVV 388
S +KYG +
Sbjct: 562 SLRGHKYGQRIA 573
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 33/314 (10%)
Query: 139 LQDSFDCSSLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDP 198
LQ S S + + I+ DQ LQ+ + + E+ + ++ LM +
Sbjct: 245 LQYSATISKWKAMIEQII-FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNK 303
Query: 199 FGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLL-ENLTNPQQIS 257
FGN+++QK E +E Q L +L +H ++ L++ E TN +
Sbjct: 304 FGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTN----N 359
Query: 258 LVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADN--------CYGIATD 309
L+ + TL + + H + F K L++ + D+ ++
Sbjct: 360 LIEELIECLPATLMQRHSCH-----VWQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVS 414
Query: 310 KSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLL----ALRVPQITA 365
+ G V+Q E K + + EII N + +GN+V+QH++ +I
Sbjct: 415 EMGSLVVQTIFENCKEKDKRTCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILN 474
Query: 366 SLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPN------VSMLLMH 419
SLL+++E S+S N+Y S VVER L R + E+ N + + +
Sbjct: 475 SLLKEVE----SYSTNRYASKVVERALRVCHVTFFDRYVKEITTPQNELPTIFLQEIASN 530
Query: 420 PFGNYVIQSALLVS 433
+GNY++Q L V+
Sbjct: 531 QYGNYIVQYLLQVA 544
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 315 VLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGH 374
V+Q CV++ QRE + AE+ + + L + YG Y+ + P++ +L ++ G+
Sbjct: 178 VVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKMKEVILGEMYGN 237
Query: 375 YVSFSCNKYGSNVVERCLLESGEEQSTRIII 405
V ++ + VVE E Q R +I
Sbjct: 238 VVKMIRHREAAYVVEDAFREFTNLQQQRALI 268
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 4/127 (3%)
Query: 285 KHFSHEDTKYLLNEVADNCYG----IATDKSGCCVLQHCVEYSKGAQRERLVAEIIANAL 340
++ ED L++E G IA VLQ CV++ A+++ L E+ L
Sbjct: 101 RNIGKEDRSKLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFL 160
Query: 341 LLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLLESGEEQS 400
LA + Y + +Q +L Q A+ + L GH + +GS VVE Q
Sbjct: 161 NLASNKYAVHFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQK 220
Query: 401 TRIIIEL 407
++ EL
Sbjct: 221 QELLAEL 227
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 38.9 bits (89), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 253 PQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSG 312
P+ S ++ A+R V L +G V +C+ H + +D K ++ + IA +
Sbjct: 340 PKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYS 399
Query: 313 CCVLQ---HCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLR 369
VL C++ +K ++ +++E+I++ + D YG V+ +LL+ R P +
Sbjct: 400 HLVLLAAFDCIDDTKLV-KQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAPAHLVPEII 458
Query: 370 QLEGHYVSFSCNKYGSNVVERCLLES 395
QL + +K + + R LLES
Sbjct: 459 QLLQKGDGNAHSKKDTAIRRRELLES 484
>sp|Q8BMC4|NOP9_MOUSE Nucleolar protein 9 OS=Mus musculus GN=Nop9 PE=2 SV=1
Length = 636
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 340 LLLAEDCYGNYVVQHLLALRVPQITAS----LLRQLEGHYVSFSCNKYGSNVVERCLLES 395
L LA+ G++V +L+ P +T +L+ L+G YV+ +C+++GS V++ + S
Sbjct: 515 LTLAQSPAGSHVFDAILS--SPSVTHKQRRRVLKTLKGQYVALACSRHGSRVLD--AIWS 570
Query: 396 GEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVS 433
G R I L+ PFG++V ++ L +
Sbjct: 571 GAALGARKEIAAELGEKNQELIQDPFGHHVARNVALTT 608
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L+ L+G VALA ++G R L S + I E+ ++ EL+ DPFG++V + +
Sbjct: 545 LKTLKGQYVALACSRHGSRVLDAIWSGAALGARKEIAAELGEKNQELIQDPFGHHVARNV 604
Query: 208 V 208
Sbjct: 605 A 605
>sp|Q86U38|NOP9_HUMAN Nucleolar protein 9 OS=Homo sapiens GN=NOP9 PE=1 SV=1
Length = 636
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 340 LLLAEDCYGNYVVQHLLALRVPQITASLLRQ----LEGHYVSFSCNKYGSNVVERCLLES 395
L LA+ G++V+ +L P +T L R+ L+G YV+ +C+++GS V++ + S
Sbjct: 515 LSLAQSPAGSHVLDAILT--SPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLD--AIWS 570
Query: 396 GEEQSTRIIIELLRSPNVSMLLMHPFGNYVIQSALLVS 433
G R I L+ PFG++V ++ L +
Sbjct: 571 GAALRARKEIAAELGEQNQELIRDPFGHHVARNVALTT 608
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 148 LRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKL 207
L++L+G VALA ++G R L S + I E+ ++ EL+ DPFG++V + +
Sbjct: 545 LQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNV 604
Query: 208 V 208
Sbjct: 605 A 605
>sp|Q75C70|NOP9_ASHGO Nucleolar protein 9 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP9 PE=3 SV=2
Length = 678
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 113/253 (44%), Gaps = 53/253 (20%)
Query: 176 PKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICL 235
PKEE M + L+ D G++ +Q ++ +Q R+ + D ++V++
Sbjct: 337 PKEESFMEY---------LLSDSVGSHFLQAVIGFARTKQVERLYKLYMQD--RIVKLAK 385
Query: 236 -NTHGIRAVLKLLENLTNPQQISLVLAALRPG-AVTLTKDTN-GHYVIQYCVKHFSHEDT 292
+T G ++ LL+NL +++ +L L P ++ L + + G +I+ ++ ++ T
Sbjct: 386 RDTTGAFVIMSLLQNL-GSKEVKSILDDLVPELSILLNSNLDFGSEIIEASIRQGDYKKT 444
Query: 293 KYLLNEVADNCYGIATDKSGCCVLQHCVE------------YSKGAQRERLV-------- 332
+ ++ ++ Y D +L+ C++ + +R R +
Sbjct: 445 E-IVEQLGKKYY--PADSESKNILESCLQLASSTLGNTKDDWPTADERRRALFLEKLINF 501
Query: 333 ----AEIIANALL------LAEDCYG---NYVVQHLL-ALRVPQITASLLRQ-LEGHYVS 377
EI +LL + + CY ++VV+H+L A RV + LL L V+
Sbjct: 502 DDYFLEIAVESLLNLPEERIMQMCYHGVFSHVVEHVLQAKRVETVKRKLLLNILYKDAVN 561
Query: 378 FSCNKYGSNVVER 390
+CN YGS+++++
Sbjct: 562 LACNAYGSHIMDK 574
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 315 VLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGH 374
++Q V+YS +RE++V + +LA YG Y++ LL +++ +L G
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 375 YVSFSCNKYGSNVVERC-LLESGEEQSTRIIIELLRS 410
++ G+ VVE +L + EQ ++I E S
Sbjct: 233 LRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGS 269
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIAN 338
++Q VK+ S + + +++ + Y +AT G +L + Y + R+ ++ E+ +
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 339 ALLLAEDCYGNYVVQHLLAL 358
L G YVV+ L L
Sbjct: 233 LRKLMRHREGAYVVEDLFVL 252
>sp|Q92347|NOP9_SCHPO Nucleolar protein 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nop9 PE=3 SV=1
Length = 655
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 334 EIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCL- 392
E+ L++ + +G+ V++ L L + S L GHYV +GS E+ L
Sbjct: 96 EVQGKELIVCNNVFGSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFGSYAFEKLLS 155
Query: 393 -------LES------------GEEQSTRIIIELLR-------SPNVSMLLMHPFGNYVI 426
LE+ GE ++ + E L P VSML+ H +V+
Sbjct: 156 HMAAILNLETQGVTEDQDDVLEGENENVFMTAETLLMYMYNEIRPEVSMLMSHKLAVHVL 215
Query: 427 QSALLV 432
L+
Sbjct: 216 GKIFLL 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,318,157
Number of Sequences: 539616
Number of extensions: 6691851
Number of successful extensions: 16825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16159
Number of HSP's gapped (non-prelim): 234
length of query: 449
length of database: 191,569,459
effective HSP length: 121
effective length of query: 328
effective length of database: 126,275,923
effective search space: 41418502744
effective search space used: 41418502744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)