Query 037508
Match_columns 449
No_of_seqs 261 out of 1549
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:27:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 3.9E-58 1.3E-62 462.2 22.6 287 147-437 20-311 (351)
2 3k49_A MRNA-binding protein PU 100.0 1.3E-57 4.4E-62 461.5 21.2 287 147-437 25-328 (369)
3 3bwt_A Protein PUF4; pumilio, 100.0 1.1E-56 3.9E-61 448.5 22.7 285 147-436 7-298 (333)
4 3k62_A FEM-3 mRNA-binding fact 100.0 2.7E-56 9.4E-61 455.8 22.8 289 147-439 21-353 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 6.8E-55 2.3E-59 442.3 24.7 287 147-437 12-331 (382)
6 3gvo_A Pumilio 2, pumilio homo 100.0 2.2E-49 7.4E-54 398.5 11.6 311 62-395 19-343 (351)
7 3k62_A FEM-3 mRNA-binding fact 100.0 2.8E-47 9.5E-52 389.2 13.6 320 60-393 18-401 (412)
8 3v71_A PUF (pumilio/FBF) domai 100.0 1.1E-46 3.7E-51 382.2 11.3 317 64-394 13-381 (382)
9 3k49_A MRNA-binding protein PU 100.0 4.8E-42 1.6E-46 347.3 14.4 299 128-432 35-360 (369)
10 3bwt_A Protein PUF4; pumilio, 100.0 9.1E-41 3.1E-45 333.4 21.7 292 130-429 19-331 (333)
11 2ilr_A Protein FACE, fanconi a 62.3 50 0.0017 30.6 10.1 37 236-272 175-213 (264)
12 3hjl_A Flagellar motor switch 59.5 1.3E+02 0.0043 28.9 16.2 163 172-337 49-224 (329)
13 2ilr_A Protein FACE, fanconi a 44.5 1.9E+02 0.0066 26.7 16.9 123 262-391 95-225 (264)
14 1k1a_A B-cell lymphoma 3-encod 42.6 1.6E+02 0.0055 25.2 10.3 123 160-289 5-129 (241)
15 3g2s_A C-terminal fragment of 35.4 88 0.003 26.2 6.7 61 314-381 70-131 (149)
16 3u0r_A Apoptosis inhibitor 5; 33.2 4E+02 0.014 27.0 12.9 183 202-393 65-267 (507)
17 2xes_A Protein PAT1 homolog 1; 25.5 2.7E+02 0.0093 25.3 8.7 98 153-250 71-177 (248)
18 2xes_A Protein PAT1 homolog 1; 25.3 2E+02 0.0068 26.3 7.7 44 301-344 71-114 (248)
19 1k1a_A B-cell lymphoma 3-encod 24.8 3.2E+02 0.011 23.1 9.7 197 195-409 4-204 (241)
20 2fv2_A RCD1 required for cell 23.6 4.4E+02 0.015 24.3 11.2 85 347-431 164-264 (268)
21 2ka4_B P113, signal transducer 21.9 31 0.0011 23.6 1.0 24 51-74 6-30 (57)
22 2fv2_A RCD1 required for cell 21.0 4.5E+02 0.015 24.2 9.0 10 199-208 164-173 (268)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=3.9e-58 Score=462.24 Aligned_cols=287 Identities=27% Similarity=0.503 Sum_probs=275.3
Q ss_pred cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhcCCHHHHHHHHHHhhCC
Q 037508 147 SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTND 226 (449)
Q Consensus 147 ~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~VvQklle~~~~~~~~~i~~~l~~~ 226 (449)
.++++.|+++++|+||+|||+||++|+.+++++++.|++++.+++.+||+|+||||||||++++++++++..|++.+.+
T Consensus 20 ~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g- 98 (351)
T 3gvo_A 20 QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRG- 98 (351)
T ss_dssp CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTT-
T ss_pred CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHh-
Confidence 5778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHHHHHHhcCChhhHHHHHHHHHHhHHhh
Q 037508 227 DFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306 (449)
Q Consensus 227 ~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~ViQ~~L~~~~~~~~~~i~~~l~~~~~~l 306 (449)
++.+|+.|++||||||++++.++.+ +...+++++.+++..|++|++||||+|+++++.+++.+..|++.+.+++.++
T Consensus 99 --~~~~l~~~~~G~rvvQk~le~~~~~-~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~l 175 (351)
T 3gvo_A 99 --HVLPLALQMYGCRVIQKALESISSD-QQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 175 (351)
T ss_dssp --CHHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHH
T ss_pred --hHHHHhhCHHhHHHHHHHHHhCCHH-HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999998765 4577889999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhhccHHHHHHHHHHHHHhHHHHhcCCChhHHHHHHhccCchhHHHHHHHHHHhhhhhhcCCcchhH
Q 037508 307 ATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCNKYGSN 386 (449)
Q Consensus 307 s~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~l~~L~~d~~Gn~VIQ~lL~~~~~~~r~~li~~L~~~~~~Ls~~k~GS~ 386 (449)
++|+|||+|+|+++++++++++..|++++.+++..|++|+|||||||++|+.++++.++.|++.+.+++..||.+||||+
T Consensus 176 s~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~ 255 (351)
T 3gvo_A 176 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASN 255 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHH
T ss_pred HhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhcC-----CChhhhccCcChhHHHHHHhhhccccc
Q 037508 387 VVERCLLESGEEQSTRIIIELLRS-----PNVSMLLMHPFGNYVIQSALLVSKVRL 437 (449)
Q Consensus 387 Vvek~l~~~~~~~r~~ii~ell~~-----~~l~~L~~d~yGnyVvq~lL~~~~~~~ 437 (449)
|||+|++++++++|..|++|++.. +.+..|++|+|||||||++|+.++++.
T Consensus 256 Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~ 311 (351)
T 3gvo_A 256 VVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ 311 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHH
Confidence 999999999999999999999963 257899999999999999999988764
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=1.3e-57 Score=461.46 Aligned_cols=287 Identities=30% Similarity=0.489 Sum_probs=272.6
Q ss_pred cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhcCCHHHHHHHHHHhhCC
Q 037508 147 SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTND 226 (449)
Q Consensus 147 ~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~VvQklle~~~~~~~~~i~~~l~~~ 226 (449)
.++++.|+++++|+|++|||+||++|+++++++++.|++++.+++.+|++|+||||||||++++++++++..|++.+.+
T Consensus 25 ~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g- 103 (369)
T 3k49_A 25 SLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKG- 103 (369)
T ss_dssp CGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTT-
T ss_pred eHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhh-
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHHHHHHhcCChhhHHHHHHHHHHhHHhh
Q 037508 227 DFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306 (449)
Q Consensus 227 ~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~ViQ~~L~~~~~~~~~~i~~~l~~~~~~l 306 (449)
++..|+.|+|||+|+|++++.++ +++...+++++.+++..|++|++||||||+++++++++.++.|++.+.+++.++
T Consensus 104 --~~~~L~~~~~G~rVlQk~le~~~-~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~l 180 (369)
T 3k49_A 104 --NMKQLSLQMYACRVIQKALEYID-SNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHL 180 (369)
T ss_dssp --CHHHHHHSTTHHHHHHHHHHHSC-HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHH
T ss_pred --hHHHHhcChhhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999986 456777889999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhhccHHHHHHHHHHHHHhHHHHhcCCChhHHHHHHhccCchh------HHHHHHHHHHhhhhhhcC
Q 037508 307 ATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQ------ITASLLRQLEGHYVSFSC 380 (449)
Q Consensus 307 s~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~l~~L~~d~~Gn~VIQ~lL~~~~~~------~r~~li~~L~~~~~~Ls~ 380 (449)
+.|+|||+|+|+|+++++++++..|++++.+++..|++|+|||||||++|+.+++. .+..|++.+.+++.+||.
T Consensus 181 s~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~ 260 (369)
T 3k49_A 181 STHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSK 260 (369)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHT
T ss_pred hCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998765 367899999999999999
Q ss_pred CcchhHHHHHHHhhcCHHHHHHHHHHHhcC-----------CChhhhccCcChhHHHHHHhhhccccc
Q 037508 381 NKYGSNVVERCLLESGEEQSTRIIIELLRS-----------PNVSMLLMHPFGNYVIQSALLVSKVRL 437 (449)
Q Consensus 381 ~k~GS~Vvek~l~~~~~~~r~~ii~ell~~-----------~~l~~L~~d~yGnyVvq~lL~~~~~~~ 437 (449)
+||||+|||+||+++++++|+.|+.+++.. +.+..|++|+|||||||++|+.++++.
T Consensus 261 ~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~ 328 (369)
T 3k49_A 261 HKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEG 328 (369)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHH
T ss_pred hhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHH
Confidence 999999999999999999999999999863 236789999999999999999998764
No 3
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.1e-56 Score=448.46 Aligned_cols=285 Identities=37% Similarity=0.631 Sum_probs=270.6
Q ss_pred cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhcCCHHHHHHHHHHhhCC
Q 037508 147 SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEEQRTRILLMLTND 226 (449)
Q Consensus 147 ~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~VvQklle~~~~~~~~~i~~~l~~~ 226 (449)
.+++++|+++++|.||+|||+||++|+++++++++.|++++.+++.+||+|+|||||+||++++++++++..|++.+.+
T Consensus 7 ~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~- 85 (333)
T 3bwt_A 7 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSP- 85 (333)
T ss_dssp CGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGG-
T ss_pred cHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHh-
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHHHHHHhcCChhhHHHHHHHHHHhHHhh
Q 037508 227 DFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNEVADNCYGI 306 (449)
Q Consensus 227 ~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~ViQ~~L~~~~~~~~~~i~~~l~~~~~~l 306 (449)
++.+|+.|++||||||++++.++++++.+.+++++.+++..|++|+|||||+|+++++++++.++.|++.+.+++.++
T Consensus 86 --~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 86 --HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp --GHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred --HHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhhccHHHHHHHHHHHHHhHHHHhcCCChhHHHHHHhccCchh----HHHHHHHHHHhhhhhhcCCc
Q 037508 307 ATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYVVQHLLALRVPQ----ITASLLRQLEGHYVSFSCNK 382 (449)
Q Consensus 307 s~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~l~~L~~d~~Gn~VIQ~lL~~~~~~----~r~~li~~L~~~~~~Ls~~k 382 (449)
+.|+|||+|+|+|+++++++++..|++++.+++..|++|+|||||||++|+.++++ .++.|++.+++++.+|+.+|
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k 243 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 243 (333)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTST
T ss_pred hcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999987654 47899999999999999999
Q ss_pred chhHHHHHHHhhcCHHHHHHHHHHHhcC---CChhhhccCcChhHHHHHHhhhcccc
Q 037508 383 YGSNVVERCLLESGEEQSTRIIIELLRS---PNVSMLLMHPFGNYVIQSALLVSKVR 436 (449)
Q Consensus 383 ~GS~Vvek~l~~~~~~~r~~ii~ell~~---~~l~~L~~d~yGnyVvq~lL~~~~~~ 436 (449)
|||+|+++|++.++ .++.++.+++.. +.+..|+.|+|||||||++|+.++++
T Consensus 244 ~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~ 298 (333)
T 3bwt_A 244 FGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQ 298 (333)
T ss_dssp THHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCc
Confidence 99999999998654 467888998863 47889999999999999999999875
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2.7e-56 Score=455.76 Aligned_cols=289 Identities=25% Similarity=0.453 Sum_probs=263.6
Q ss_pred cHHHH--HHHHHHHhcCccccHHHHHhhccC-CHHHHHHHHHHHHHH---HHHhhcCCCccHHHHHHHhcCCH-------
Q 037508 147 SLRDL--RGNIVALAKDQYGCRHLQRTMSSL-PKEEIEMIFVEVIDR---VCELMIDPFGNYVVQKLVELCSE------- 213 (449)
Q Consensus 147 ~l~~i--~g~i~~La~d~~gsrvlQ~lLe~~-~~e~~~~i~~ei~~~---~~~L~~d~~Gn~VvQklle~~~~------- 213 (449)
+|.++ +|+++++|.||+|||+||++|+.+ ++++++.||+++.++ +.+||+|+||||||||+++++++
T Consensus 21 ~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~ 100 (412)
T 3k62_A 21 SLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYT 100 (412)
T ss_dssp CHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHH
T ss_pred cHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccH
Confidence 56676 699999999999999999999997 899999999999864 89999999999999999999999
Q ss_pred HHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHH--hhchhchhcCcCccHHHHHHHhcCChhh
Q 037508 214 EQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAAL--RPGAVTLTKDTNGHYVIQYCVKHFSHED 291 (449)
Q Consensus 214 ~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el--~~~~~~L~~d~~Gn~ViQ~~L~~~~~~~ 291 (449)
+++..|++.+.+ ++..|+.|++||||||++++.++. ++...+++++ .+++..|++|++||||||+||++++++.
T Consensus 101 ~q~~~i~~~l~g---~v~~L~~~~~GsrvvQk~le~~~~-~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~ 176 (412)
T 3k62_A 101 KRQEKLKNFISS---QMTDMCLDKFACRVIQSSLQNMDL-SLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKN 176 (412)
T ss_dssp HHHHHHHHHHHH---THHHHHHSTTHHHHHHHHHHHSCH-HHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHH---HHHHHHcChhhhHHHHHHHHhCCH-HHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHH
Confidence 899999999987 699999999999999999999864 5678888999 6899999999999999999999999999
Q ss_pred HHHHHHHHH--HhHHhhhcCCchhHHHHHHHhhccH------------HHHH----HHHHHHHHhHHHHhcCCChhHHHH
Q 037508 292 TKYLLNEVA--DNCYGIATDKSGCCVLQHCVEYSKG------------AQRE----RLVAEIIANALLLAEDCYGNYVVQ 353 (449)
Q Consensus 292 ~~~i~~~l~--~~~~~ls~~k~GS~Vvq~~L~~~~~------------~~~~----~il~~l~~~l~~L~~d~~Gn~VIQ 353 (449)
+++|++.+. +++.++++|+|||+|+|+|++++++ +++. .+++++..++..|++|+|||||||
T Consensus 177 ~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ 256 (412)
T 3k62_A 177 WEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQ 256 (412)
T ss_dssp HHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHH
T ss_pred HHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHH
Confidence 999999997 5999999999999999999999863 3443 467777888999999999999999
Q ss_pred HHhccCchh-HHHHHHH-HHHhhhhhhcCCcchhHHHHHHHhhcCHHHHHHHHHHHhcC---------CChhhhccCcCh
Q 037508 354 HLLALRVPQ-ITASLLR-QLEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRS---------PNVSMLLMHPFG 422 (449)
Q Consensus 354 ~lL~~~~~~-~r~~li~-~L~~~~~~Ls~~k~GS~Vvek~l~~~~~~~r~~ii~ell~~---------~~l~~L~~d~yG 422 (449)
++|+.+.+. .|..++. .|.+++++||++||||+|||||++++++++|..|++|++.+ +.+..|++|+||
T Consensus 257 ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyG 336 (412)
T 3k62_A 257 HIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFG 336 (412)
T ss_dssp HHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCch
Confidence 999998876 5888887 59999999999999999999999999999999999999852 247889999999
Q ss_pred hHHHHHHhhhcccccCC
Q 037508 423 NYVIQSALLVSKVRLFS 439 (449)
Q Consensus 423 nyVvq~lL~~~~~~~~~ 439 (449)
|||||++|+++++...+
T Consensus 337 NYViQ~~L~~~~~~~~~ 353 (412)
T 3k62_A 337 NYVVQCMLTICCDAVSG 353 (412)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccccc
Confidence 99999999999886443
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=6.8e-55 Score=442.33 Aligned_cols=287 Identities=23% Similarity=0.393 Sum_probs=259.1
Q ss_pred cHHHH--HHHHHHHhcCccccHHHHHhhccCCHH-HHHHHHHHHH---HHHHHhhcCCCccHHHHHHHhcCCHHHHHHHH
Q 037508 147 SLRDL--RGNIVALAKDQYGCRHLQRTMSSLPKE-EIEMIFVEVI---DRVCELMIDPFGNYVVQKLVELCSEEQRTRIL 220 (449)
Q Consensus 147 ~l~~i--~g~i~~La~d~~gsrvlQ~lLe~~~~e-~~~~i~~ei~---~~~~~L~~d~~Gn~VvQklle~~~~~~~~~i~ 220 (449)
++.++ +|+++++|.||+|||+||+.|+.++++ .+..||+++. +++.+||+|+||||||||++++++++++..++
T Consensus 12 ~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li 91 (382)
T 3v71_A 12 SLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELL 91 (382)
T ss_dssp CHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHH
T ss_pred cHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHH
Confidence 67788 799999999999999999999999765 4788999885 89999999999999999999999999999888
Q ss_pred HHh-hCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhh-chhchhcCcCccHHHHHHHhcCChhhHHHHHHH
Q 037508 221 LML-TNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRP-GAVTLTKDTNGHYVIQYCVKHFSHEDTKYLLNE 298 (449)
Q Consensus 221 ~~l-~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~-~~~~L~~d~~Gn~ViQ~~L~~~~~~~~~~i~~~ 298 (449)
..+ .+ ++..|+.|++||||||++++.++.+ +...+++++.+ ++..|++|++||||||+||++.+++.+++|++.
T Consensus 92 ~~~l~g---~v~~Ls~~~~G~rvvQk~ie~~~~~-~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~ 167 (382)
T 3v71_A 92 RQMIDG---GLLAMCKDKFACRVVQLALQKFDHS-NVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHF 167 (382)
T ss_dssp HHHHHT---CHHHHHTSTTHHHHHHHHHHHSCHH-HHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHH
T ss_pred HHHhcc---hHHHHHhCccchHHHHHHHHHCCHH-HHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHH
Confidence 875 55 6999999999999999999998765 45667789998 899999999999999999999999999999999
Q ss_pred HH--HhHHhhhcCCchhHHHHHHHhhccHHH-----------HHHHHHHHHHhHHHHhcCCChhHHHHHHhccCch--hH
Q 037508 299 VA--DNCYGIATDKSGCCVLQHCVEYSKGAQ-----------RERLVAEIIANALLLAEDCYGNYVVQHLLALRVP--QI 363 (449)
Q Consensus 299 l~--~~~~~ls~~k~GS~Vvq~~L~~~~~~~-----------~~~il~~l~~~l~~L~~d~~Gn~VIQ~lL~~~~~--~~ 363 (449)
+. +++.++++|+|||+|+|+||+++++.+ ...|++++.+++..|++|+|||||||++|+.+++ ..
T Consensus 168 ~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~ 247 (382)
T 3v71_A 168 LSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMY 247 (382)
T ss_dssp HHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHH
T ss_pred HhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHH
Confidence 97 699999999999999999999976532 2356777888889999999999999999999764 46
Q ss_pred HHHHHHH-HHhhhhhhcCCcchhHHHHHHHhhcCHHHHHHHHHHHhcC---------CChhhhccCcChhHHHHHHhhhc
Q 037508 364 TASLLRQ-LEGHYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRS---------PNVSMLLMHPFGNYVIQSALLVS 433 (449)
Q Consensus 364 r~~li~~-L~~~~~~Ls~~k~GS~Vvek~l~~~~~~~r~~ii~ell~~---------~~l~~L~~d~yGnyVvq~lL~~~ 433 (449)
|..++.. |.+++++||.+||||+|||+||+++++++|..|++|++.. +.+..|++|+|||||||++|+++
T Consensus 248 r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~ 327 (382)
T 3v71_A 248 RDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISIC 327 (382)
T ss_dssp HHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHc
Confidence 8899975 9999999999999999999999999999999999999962 36888999999999999999999
Q ss_pred cccc
Q 037508 434 KVRL 437 (449)
Q Consensus 434 ~~~~ 437 (449)
+++.
T Consensus 328 ~~~~ 331 (382)
T 3v71_A 328 TAAL 331 (382)
T ss_dssp HHHC
T ss_pred cccc
Confidence 9854
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.2e-49 Score=398.53 Aligned_cols=311 Identities=22% Similarity=0.349 Sum_probs=277.4
Q ss_pred ccccccccCCcccCCccccCCCCCCCCCCCCCCccchhHHhhhhhcccccccCCCCCCCCcccccccccCCCcCCchhhc
Q 037508 62 LNVNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQD 141 (449)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 141 (449)
+...| +.+.+..+++|.+|| ++.|......+..+...++ +.+.+ +...-+.+.+||+++|+
T Consensus 19 ~~l~~--~~g~i~~la~dq~gs--R~lQ~~l~~~~~~~~~~i~-----~ei~~----------~~~~L~~d~~gn~vvQk 79 (351)
T 3gvo_A 19 LQLRD--LIGHIVEFSQDQHGS--RFIQQKLERATPAERQIVF-----NEILQ----------AAYQLMTDVFGNYVIQK 79 (351)
T ss_dssp CCGGG--GTTCHHHHHTSHHHH--HHHHHHHHHCCHHHHHHHH-----HHHGG----------GHHHHHTSTTHHHHHHH
T ss_pred cCHHH--HHhHHHHHhcCCcch--HHHHHHHhhCCHHHHHHHH-----HHHHH----------hHHHHHhChhhhHHHHH
Confidence 34555 677888999999999 9998875543333322122 12221 12344567789999999
Q ss_pred ccccc-------cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhcCCHH
Q 037508 142 SFDCS-------SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVELCSEE 214 (449)
Q Consensus 142 ~~~~~-------~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~VvQklle~~~~~ 214 (449)
+++++ +++++.|+++++|.|++|||+||++++.++.+++..|++++.+++..|+.|++||||+|++++.++++
T Consensus 80 lle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~ 159 (351)
T 3gvo_A 80 FFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQ 159 (351)
T ss_dssp HHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGG
T ss_pred HHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHH
Confidence 99988 57789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHHHHHHhcCChhhHHH
Q 037508 215 QRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQYCVKHFSHEDTKY 294 (449)
Q Consensus 215 ~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~ViQ~~L~~~~~~~~~~ 294 (449)
++..|++.+.+ ++..|+.|+|||+|||++++.++ +++...+++++.+++..|++|+|||||||++|++++++.+..
T Consensus 160 ~~~~i~~~~~~---~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~ 235 (351)
T 3gvo_A 160 SLQFIIDAFKG---QVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSK 235 (351)
T ss_dssp GTHHHHHHTTT---THHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHhCcHhHHHHHHHHHHCC-HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHH
Confidence 99999999988 69999999999999999999986 556778889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhhcCCchhHHHHHHHhhccHHHHHHHHHHHHH-------hHHHHhcCCChhHHHHHHhccCchhHHHHH
Q 037508 295 LLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIA-------NALLLAEDCYGNYVVQHLLALRVPQITASL 367 (449)
Q Consensus 295 i~~~l~~~~~~ls~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~-------~l~~L~~d~~Gn~VIQ~lL~~~~~~~r~~l 367 (449)
|++.+.+++.++++|+|||+|||+|+++++++++..|++++.. .+..|++|+|||||||++|+.++++.|+.|
T Consensus 236 i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i 315 (351)
T 3gvo_A 236 IVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKII 315 (351)
T ss_dssp HHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCcchhHHHHHHHhhc
Q 037508 368 LRQLEGHYVSFSCNKYGSNVVERCLLES 395 (449)
Q Consensus 368 i~~L~~~~~~Ls~~k~GS~Vvek~l~~~ 395 (449)
++.+++++..|+.++||+||++++-+..
T Consensus 316 ~~~i~~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 316 MHKIRPHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp HHHHGGGHHHHTTSTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999999999999999887644
No 7
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2.8e-47 Score=389.24 Aligned_cols=320 Identities=17% Similarity=0.212 Sum_probs=268.4
Q ss_pred ccccccccccCCcccCCccccCCCCCCCCCCCCCCccchhHHhhhhhcccccccCCCCCCCCcccccccccCCCcCCchh
Q 037508 60 SHLNVNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWL 139 (449)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (449)
+.+.-.|-|..+.|..|++|++|| +++|.......+.+....+ |+.+.++. .....-+.+.+||+++
T Consensus 18 ~~~~L~~~~~~G~i~~la~Dq~Gs--R~lQ~~l~~~~~~e~~~~I----f~el~~~~-------~~~~~L~~d~fGNyvv 84 (412)
T 3k62_A 18 SRLSLSEVLDSGDLMKFAVDKTGC--QFLEKAVKGSLTSYQKFQL----FEQVIGRK-------DDFLKLSTNIFGNYLV 84 (412)
T ss_dssp TTCCHHHHHHHTCHHHHHTSHHHH--HHHHHHTTSCCCHHHHHHH----HHHHSSSH-------HHHHHHHTSTTHHHHH
T ss_pred CCCcHHHHHhCCCcHHHhcCChhH--HHHHHHhccCCCHHHHHHH----HHHHHhhh-------hHHHHHHhCcHHHHHH
Confidence 345566644468899999999999 9999998765222221112 22222110 0123445677899999
Q ss_pred hcccccccH--------------HHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHH--HHHHHHhhcCCCccHH
Q 037508 140 QDSFDCSSL--------------RDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEV--IDRVCELMIDPFGNYV 203 (449)
Q Consensus 140 q~~~~~~~l--------------~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei--~~~~~~L~~d~~Gn~V 203 (449)
|+++++++- +.+.|++++||.|++|||+||++|+.++.+++..|+.++ .+++..|+.|++||||
T Consensus 85 QKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhV 164 (412)
T 3k62_A 85 QSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHV 164 (412)
T ss_dssp HHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHH
T ss_pred HHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHH
Confidence 999998843 457899999999999999999999999999999999999 7999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCch-----------HHH----HHHHHHHhhchh
Q 037508 204 VQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNP-----------QQI----SLVLAALRPGAV 268 (449)
Q Consensus 204 vQklle~~~~~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~-----------~~~----~~I~~el~~~~~ 268 (449)
|||+++.++++.++.|++.+.+ .+++.+++.|+|||+|||++++.++.. +++ +.+++++.+++.
T Consensus 165 IQK~Le~~~~~~~~~I~~~~~~-~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~ 243 (412)
T 3k62_A 165 IQKVVAVIPLKNWEFIVDFVAT-PEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQ 243 (412)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHS-HHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCCHHHHHHHHHHHhc-chhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 237999999999999999999998742 333 346678888999
Q ss_pred chhcCcCccHHHHHHHhcCChhh-HHHHHH-HHHHhHHhhhcCCchhHHHHHHHhhccHHHHHHHHHHHHHh--------
Q 037508 269 TLTKDTNGHYVIQYCVKHFSHED-TKYLLN-EVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIAN-------- 338 (449)
Q Consensus 269 ~L~~d~~Gn~ViQ~~L~~~~~~~-~~~i~~-~l~~~~~~ls~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~-------- 338 (449)
.|+.|+|||||||++|+++.++. +..|++ .+.+++.++|+|||||+|||+||++++++++..|++++.+.
T Consensus 244 ~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~ 323 (412)
T 3k62_A 244 ELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTG 323 (412)
T ss_dssp HHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTC
T ss_pred HHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCcccc
Confidence 99999999999999999987754 677776 58999999999999999999999999999999999999863
Q ss_pred ---HHHHhcCCChhHHHHHHhccCchh--------------------HHHHHHHHHHhhhhhhcCCcchhHHHHHHHh
Q 037508 339 ---ALLLAEDCYGNYVVQHLLALRVPQ--------------------ITASLLRQLEGHYVSFSCNKYGSNVVERCLL 393 (449)
Q Consensus 339 ---l~~L~~d~~Gn~VIQ~lL~~~~~~--------------------~r~~li~~L~~~~~~Ls~~k~GS~Vvek~l~ 393 (449)
+..|++|+|||||||++|+.+++. -++.|+.++++|...|...+||++|++++-+
T Consensus 324 ~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~~ 401 (412)
T 3k62_A 324 KDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLAN 401 (412)
T ss_dssp CCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHH
T ss_pred chHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHH
Confidence 789999999999999999997432 2578999999999999999999999988754
No 8
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-46 Score=382.17 Aligned_cols=317 Identities=17% Similarity=0.307 Sum_probs=266.1
Q ss_pred ccccccCCcccCCccccCCCCCCCCCCCCCCccchhHHhhhhhcccccccCCCCCCCCcccccccccCCCcCCchhhccc
Q 037508 64 VNDRIFDNPVHHFPLVENGFFSHPCQEAEPINQDSSILNLLHNHNFDGLRSNGNELSSVPRNQWMSSLSLKRNQWLQDSF 143 (449)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 143 (449)
-.|-|-...+..|++|++|| ++.|...+..+..++...+-+. +.. .......-+.+.+||+++|+++
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gs--r~lQ~~l~~~~~~~~~~~if~~----l~e-------~~~~~~~L~~d~~Gn~vvQkll 79 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGV--KFLEANYPLDSEDQIRKAVFEK----FTE-------STTLFVGLCHSRNGNFIVQKLV 79 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHH--HHHHHTSCSCTTCHHHHHHHHH----HHS-------CHHHHHHHHSSTTHHHHHHHHH
T ss_pred HHHHhhCCCEehhccCCccc--HHHHHHcccCChHHHHHHHHHH----HHh-------hHHHHHHHhcCcHHHHHHHHHH
Confidence 34422267788999999999 9999998865443321122211 110 0111224456778999999999
Q ss_pred cccc-------HHH-HHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHH-HHHHhhcCCCccHHHHHHHhcCCHH
Q 037508 144 DCSS-------LRD-LRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVID-RVCELMIDPFGNYVVQKLVELCSEE 214 (449)
Q Consensus 144 ~~~~-------l~~-i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~-~~~~L~~d~~Gn~VvQklle~~~~~ 214 (449)
++++ +.+ +.|+++.||.|++|||++|++|+.++.+++..++.++.+ ++..|+.|++|||||||+++.++++
T Consensus 80 e~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~ 159 (382)
T 3v71_A 80 ELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVD 159 (382)
T ss_dssp HTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTT
T ss_pred HhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHH
Confidence 9983 344 579999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchH----------HHHHHHHHHhhchhchhcCcCccHHHHHHH
Q 037508 215 QRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQ----------QISLVLAALRPGAVTLTKDTNGHYVIQYCV 284 (449)
Q Consensus 215 ~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~----------~~~~I~~el~~~~~~L~~d~~Gn~ViQ~~L 284 (449)
.++.|++.+.+ .+++.+++.|+|||+|||++++.++..+ ..+.+++++.+++..|+.|+|||||||++|
T Consensus 160 ~~~~Ii~~~~~-~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL 238 (382)
T 3v71_A 160 MWTFFVHFLSS-GDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVI 238 (382)
T ss_dssp TSHHHHHHHHS-TTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHH
T ss_pred HHHHHHHHHhc-ccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHH
Confidence 99999999974 1279999999999999999999986532 234577888999999999999999999999
Q ss_pred hcCCh--hhHHHHHH-HHHHhHHhhhcCCchhHHHHHHHhhccHHHHHHHHHHHHH-----------hHHHHhcCCChhH
Q 037508 285 KHFSH--EDTKYLLN-EVADNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIA-----------NALLLAEDCYGNY 350 (449)
Q Consensus 285 ~~~~~--~~~~~i~~-~l~~~~~~ls~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~-----------~l~~L~~d~~Gn~ 350 (449)
+++.+ ..+..|++ .+.+++.++|+|||||+||++||++++++++..|++++.+ .+..|++|+||||
T Consensus 239 ~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNy 318 (382)
T 3v71_A 239 KSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNY 318 (382)
T ss_dssp TCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccH
Confidence 98764 35778887 4899999999999999999999999999999999999984 5889999999999
Q ss_pred HHHHHhccCchh-------------------HHHHHHHHHHhhhhhhcCCcchhHHHHHHHhh
Q 037508 351 VVQHLLALRVPQ-------------------ITASLLRQLEGHYVSFSCNKYGSNVVERCLLE 394 (449)
Q Consensus 351 VIQ~lL~~~~~~-------------------~r~~li~~L~~~~~~Ls~~k~GS~Vvek~l~~ 394 (449)
|||++|+.+++. .++.|+.++++|+..|...+||+||++++-++
T Consensus 319 VvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~~ 381 (382)
T 3v71_A 319 VVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH 381 (382)
T ss_dssp HHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHhc
Confidence 999999997642 25789999999999999999999999998765
No 9
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=4.8e-42 Score=347.31 Aligned_cols=299 Identities=17% Similarity=0.262 Sum_probs=270.7
Q ss_pred cccCCCcCCchhhcccccc-------cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCc
Q 037508 128 MSSLSLKRNQWLQDSFDCS-------SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFG 200 (449)
Q Consensus 128 ~~~~~~~~~~~~q~~~~~~-------~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~G 200 (449)
.-..+..|.+++|+.++++ +++++.|++++|++|++|++|+|+++++++++++..|++++.+++.+|++|+||
T Consensus 35 ~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G 114 (369)
T 3k49_A 35 EFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYA 114 (369)
T ss_dssp HHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTH
T ss_pred HHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhh
Confidence 3445667999999999988 678899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHH
Q 037508 201 NYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVI 280 (449)
Q Consensus 201 n~VvQklle~~~~~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~Vi 280 (449)
++|+|+++++++++++..|+.++.+ ++..|+.|++|++|||++++.++ ++....|++.+.+++..++.+++|++|+
T Consensus 115 ~rVlQk~le~~~~~q~~~ii~el~~---~~~~L~~d~~Gn~ViQ~~l~~~~-~~~~~~i~~~~~~~~~~ls~~~~Gs~Vv 190 (369)
T 3k49_A 115 CRVIQKALEYIDSNQRIELVLELSD---SVLQMIKDQNGNHVIQKAIETIP-IEKLPFILSSLTGHIYHLSTHSYGCRVI 190 (369)
T ss_dssp HHHHHHHHHHSCHHHHHHHHGGGTT---CHHHHHHSTTHHHHHHHHHHHSC-GGGCHHHHHHHTTTHHHHHTSTTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH---HHHHHhcCcccchHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhCCCccCcHH
Confidence 9999999999999999999999988 58889999999999999999975 4567888999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHhHHhhhcCCchhHHHHHHHhhccHH------HHHHHHHHHHHhHHHHhcCCChhHHHHH
Q 037508 281 QYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGA------QRERLVAEIIANALLLAEDCYGNYVVQH 354 (449)
Q Consensus 281 Q~~L~~~~~~~~~~i~~~l~~~~~~ls~~k~GS~Vvq~~L~~~~~~------~~~~il~~l~~~l~~L~~d~~Gn~VIQ~ 354 (449)
|+|+++++++.+..+++.+.+++..|+.++||+.|+|++|+.+++. .+..|++.+.+++..|++|+||++||++
T Consensus 191 q~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek 270 (369)
T 3k49_A 191 QRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEK 270 (369)
T ss_dssp HHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHH
Confidence 9999999999999999999999999999999999999999998764 3678899999999999999999999999
Q ss_pred HhccCchhHHHHHHHHHHh-------------hhhhhcCCcchhHHHHHHHhhcCHHHHHHHHHHHhcCCChhhhcc-Cc
Q 037508 355 LLALRVPQITASLLRQLEG-------------HYVSFSCNKYGSNVVERCLLESGEEQSTRIIIELLRSPNVSMLLM-HP 420 (449)
Q Consensus 355 lL~~~~~~~r~~li~~L~~-------------~~~~Ls~~k~GS~Vvek~l~~~~~~~r~~ii~ell~~~~l~~L~~-d~ 420 (449)
+|+.++++.|+.|++.+.+ .+..|+.|+||..|++++|+.+++..+..++.++.. ++..|.+ +.
T Consensus 271 ~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~p--~l~~L~~~~~ 348 (369)
T 3k49_A 271 SILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRA--YLDKLNKSNS 348 (369)
T ss_dssp HHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHCC-
T ss_pred HHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHHHH--HHHHHhcccc
Confidence 9999999999999998854 367899999999999999999999999999999976 8999976 59
Q ss_pred ChhHHHHHHhhh
Q 037508 421 FGNYVIQSALLV 432 (449)
Q Consensus 421 yGnyVvq~lL~~ 432 (449)
||+.++..+-..
T Consensus 349 ~G~~~~~~~e~~ 360 (369)
T 3k49_A 349 LGNRHLASVEKL 360 (369)
T ss_dssp -CCCCCHHHHHH
T ss_pred CcchHHHHHHHH
Confidence 999887665443
No 10
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=9.1e-41 Score=333.37 Aligned_cols=292 Identities=18% Similarity=0.294 Sum_probs=264.3
Q ss_pred cCCCcCCchhhcccccc-------cHHHHHHHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccH
Q 037508 130 SLSLKRNQWLQDSFDCS-------SLRDLRGNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNY 202 (449)
Q Consensus 130 ~~~~~~~~~~q~~~~~~-------~l~~i~g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~ 202 (449)
..+..|.+++|+.++++ +++++.+++++|++|++|++++|+++++++++++..|++++.+++.+|+.|+||++
T Consensus 19 ~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~r 98 (333)
T 3bwt_A 19 CKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTR 98 (333)
T ss_dssp TSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHH
T ss_pred hcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccH
Confidence 34556899999999987 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCcCccHHHH
Q 037508 203 VVQKLVELCS-EEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDTNGHYVIQ 281 (449)
Q Consensus 203 VvQklle~~~-~~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~~Gn~ViQ 281 (449)
|+|++++.++ ++++..+++++.+ ++..|+.|++|++|||++++..+ ++..+.|++.+.+++.+++.+++|++|+|
T Consensus 99 viQ~~l~~~~~~~~~~~i~~el~~---~~~~L~~d~~gn~Viqk~l~~~~-~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq 174 (333)
T 3bwt_A 99 ALQKLIECIKTDEEAQIVVDSLRP---YTVQLSKDLNGNHVIQKCLQRLK-PENFQFIFDAISDSCIDIATHRHGCCVLQ 174 (333)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHGG---GHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHSHHHHHTSTTHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHH---HHHHHhcCCcccHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999985 6677889999987 69999999999999999999975 56788999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHhHHhhhcCCchhHHHHHHHhhccHHH----HHHHHHHHHHhHHHHhcCCChhHHHHHHhc
Q 037508 282 YCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCVLQHCVEYSKGAQ----RERLVAEIIANALLLAEDCYGNYVVQHLLA 357 (449)
Q Consensus 282 ~~L~~~~~~~~~~i~~~l~~~~~~ls~~k~GS~Vvq~~L~~~~~~~----~~~il~~l~~~l~~L~~d~~Gn~VIQ~lL~ 357 (449)
+|+++++++++..+++.+.+++..++.++||+.|||++++.+++.. +..|++.+.+++..|++++||++||+++|+
T Consensus 175 ~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~ 254 (333)
T 3bwt_A 175 RCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILK 254 (333)
T ss_dssp HHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999877643 678999999999999999999999999998
Q ss_pred cCchhHHHHHHHHHH-----hhhhhhcCCcchhHHHHHHHhhcCHH---HHHHHHHHHhcCCCh-hhhccCcChhHHHHH
Q 037508 358 LRVPQITASLLRQLE-----GHYVSFSCNKYGSNVVERCLLESGEE---QSTRIIIELLRSPNV-SMLLMHPFGNYVIQS 428 (449)
Q Consensus 358 ~~~~~~r~~li~~L~-----~~~~~Ls~~k~GS~Vvek~l~~~~~~---~r~~ii~ell~~~~l-~~L~~d~yGnyVvq~ 428 (449)
.++ .++.++..+. +++..|+.++||++|++++|+.+++. .++.++.++.. ++ ..|..++||..|+.+
T Consensus 255 ~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p--~l~~~lr~~~~G~~i~~~ 330 (333)
T 3bwt_A 255 TAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAP--LLVGPIRNTPHGKRIIGM 330 (333)
T ss_dssp SHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGG--GCCGGGGGSHHHHHHHTT
T ss_pred ccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHH--hchhhhcCCCCHHHHHHH
Confidence 743 4566777654 57999999999999999999988764 67889999866 77 789999999999876
Q ss_pred H
Q 037508 429 A 429 (449)
Q Consensus 429 l 429 (449)
+
T Consensus 331 l 331 (333)
T 3bwt_A 331 L 331 (333)
T ss_dssp S
T ss_pred h
Confidence 3
No 11
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=62.28 E-value=50 Score=30.63 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=13.7
Q ss_pred CCchhHHHHHHHHhc--CchHHHHHHHHHHhhchhchhc
Q 037508 236 NTHGIRAVLKLLENL--TNPQQISLVLAALRPGAVTLTK 272 (449)
Q Consensus 236 ~~~G~~VvQklle~~--~~~~~~~~I~~el~~~~~~L~~ 272 (449)
+..-..|+|.+++.- -+++.++.+++.+.+....+.+
T Consensus 175 tE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~sk 213 (264)
T 2ilr_A 175 KEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATT 213 (264)
T ss_dssp CHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CC
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhc
Confidence 334444555555521 1233444444444444444443
No 12
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=59.53 E-value=1.3e+02 Score=28.90 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=79.3
Q ss_pred hccCCHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhc-CCHHHHHHHHHHhhCCch--hhHHHhcCCchhHHHHHHHH
Q 037508 172 MSSLPKEEIEMIFVEVIDRVCELMIDPFGNYVVQKLVEL-CSEEQRTRILLMLTNDDF--QLVRICLNTHGIRAVLKLLE 248 (449)
Q Consensus 172 Le~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~VvQklle~-~~~~~~~~i~~~l~~~~~--~l~~L~~~~~G~~VvQklle 248 (449)
+...+.++.+.+++++...+..-..-..|+--++++++. .+++.-..|++.+.+... .|-.|. ..-...+-.++.
T Consensus 49 l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~~~A~~ll~~i~~~~~~~~~~~L~--~~dp~~la~~i~ 126 (329)
T 3hjl_A 49 LESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILELGDAEKILKEIE--KVDSRILASLLK 126 (329)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH--TSCHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCHHHHHHHHHHHhccccCCHHHHHH--CCCHHHHHHHHH
Confidence 345678888888888887776654432232556666644 355555566666554200 011110 111222223332
Q ss_pred hcCchHHHHHHHHHHhhc----hhchhcCcCccHHHHHHHh--cCChhhHHHHHHHHHHhHHhh---h-cCCchhHHHHH
Q 037508 249 NLTNPQQISLVLAALRPG----AVTLTKDTNGHYVIQYCVK--HFSHEDTKYLLNEVADNCYGI---A-TDKSGCCVLQH 318 (449)
Q Consensus 249 ~~~~~~~~~~I~~el~~~----~~~L~~d~~Gn~ViQ~~L~--~~~~~~~~~i~~~l~~~~~~l---s-~~k~GS~Vvq~ 318 (449)
. ..++....|+..+.+. +...+-+..-+-|+.++.. ..+|+..+.+-+.+...+... . ...-|...+-.
T Consensus 127 ~-EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ 205 (329)
T 3hjl_A 127 N-EHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAE 205 (329)
T ss_dssp T-SCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred h-CCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 2 1122223333333222 1122222233345555544 334555555544554444333 1 23567777888
Q ss_pred HHhhccHHHHHHHHHHHHH
Q 037508 319 CVEYSKGAQRERLVAEIIA 337 (449)
Q Consensus 319 ~L~~~~~~~~~~il~~l~~ 337 (449)
+|...+......+++.+..
T Consensus 206 ILN~~d~~~e~~il~~L~~ 224 (329)
T 3hjl_A 206 LLNTLDKETRELILQSIGQ 224 (329)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHH
Confidence 8888777777777776664
No 13
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=44.49 E-value=1.9e+02 Score=26.66 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=65.8
Q ss_pred HHhhchhchhcCcCccHHHH-HHHhcCChhhHHHHHHH-HHHhHHhhhcCCchhHHHHHHHh--hccHHHHHHHHHHHHH
Q 037508 262 ALRPGAVTLTKDTNGHYVIQ-YCVKHFSHEDTKYLLNE-VADNCYGIATDKSGCCVLQHCVE--YSKGAQRERLVAEIIA 337 (449)
Q Consensus 262 el~~~~~~L~~d~~Gn~ViQ-~~L~~~~~~~~~~i~~~-l~~~~~~ls~~k~GS~Vvq~~L~--~~~~~~~~~il~~l~~ 337 (449)
-+.+++..+ ..-++.++. .+.+.+ ..+...+++. +..-+..-..+..=+.++.++++ ...++.+..++..+.
T Consensus 95 l~LPkil~L--~~~ASR~L~sal~~f~-k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL- 170 (264)
T 2ilr_A 95 LFLGRILSL--TSSASRLLTTALTSFA-AKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL- 170 (264)
T ss_dssp HHHHHHHHC--SSCCCHHHHHHHHHHH-HHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH-
T ss_pred HHHHHHHhc--cCcchhHHHHHHHHHH-HhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH-
Confidence 344555555 334444433 333332 3333333433 22344444556666778888885 244555555555553
Q ss_pred hHHHHhcCCChhHHHHHHhccC---chhHHHHHHHHHHhhhhhhcCC-cchhHHHHHH
Q 037508 338 NALLLAEDCYGNYVVQHLLALR---VPQITASLLRQLEGHYVSFSCN-KYGSNVVERC 391 (449)
Q Consensus 338 ~l~~L~~d~~Gn~VIQ~lL~~~---~~~~r~~li~~L~~~~~~Ls~~-k~GS~Vvek~ 391 (449)
.+.-+..---|+|.+++.. +++.-..++..+.+....++.+ |||.-++.-+
T Consensus 171 ---~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~i 225 (264)
T 2ilr_A 171 ---ELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVM 225 (264)
T ss_dssp ---HSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHH
T ss_pred ---hccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHH
Confidence 3444555566889999874 4667778888888777777776 5555544433
No 14
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=42.59 E-value=1.6e+02 Score=25.18 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=65.1
Q ss_pred cCccccHHHHHhhccCCHHHHHHHHHHHHHHHHH-hhcCCCccHHHHHHHhcCCHHHHHHHHHHhhCCchhhHHHhcCCc
Q 037508 160 KDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCE-LMIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTH 238 (449)
Q Consensus 160 ~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~-L~~d~~Gn~VvQklle~~~~~~~~~i~~~l~~~~~~l~~L~~~~~ 238 (449)
.|..|...|..+...++.+..+.+++.+...-.. -..|..|.-.+......+..+..+.+++.=.. + -..+..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~--~~~~~~ 78 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS----P--MALDRH 78 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----T--TCCCTT
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC----c--cccCCC
Confidence 4777888888888888887777776654432222 24567788888888877777665555542111 1 123455
Q ss_pred hhHHHHHHHHhcCchHHHHHHHHHHhhc-hhchhcCcCccHHHHHHHhcCCh
Q 037508 239 GIRAVLKLLENLTNPQQISLVLAALRPG-AVTLTKDTNGHYVIQYCVKHFSH 289 (449)
Q Consensus 239 G~~VvQklle~~~~~~~~~~I~~el~~~-~~~L~~d~~Gn~ViQ~~L~~~~~ 289 (449)
|...+..+...- ..+..+.+++...+. +..-..+..|...+...+..+..
T Consensus 79 g~t~l~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 129 (241)
T 1k1a_A 79 GQTAAHLACEHR-SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 129 (241)
T ss_dssp SCCHHHHHHHTT-CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcC-CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH
Confidence 555555555542 222233333222110 11223345566666555554443
No 15
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=35.43 E-value=88 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHhhccHHHHHHHHH-HHHHhHHHHhcCCChhHHHHHHhccCchhHHHHHHHHHHhhhhhhcCC
Q 037508 314 CVLQHCVEYSKGAQRERLVA-EIIANALLLAEDCYGNYVVQHLLALRVPQITASLLRQLEGHYVSFSCN 381 (449)
Q Consensus 314 ~Vvq~~L~~~~~~~~~~il~-~l~~~l~~L~~d~~Gn~VIQ~lL~~~~~~~r~~li~~L~~~~~~Ls~~ 381 (449)
.+++.|++.|+......+.+ ++.+.+..++.++|.. ...++..+++++..+......+..+
T Consensus 70 ~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~-------~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 70 TVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLG-------SRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTG-------GGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccC-------CCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 47888999999877666654 5667778888877621 1235678888888888776665433
No 16
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=33.19 E-value=4e+02 Score=26.98 Aligned_cols=183 Identities=12% Similarity=0.096 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhc-CcCccH--
Q 037508 202 YVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTK-DTNGHY-- 278 (449)
Q Consensus 202 ~VvQklle~~~~~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~-d~~Gn~-- 278 (449)
..+..+++.|..++...=+..+. .+..+|.+.+-.+|+.-+...+.+++..+. +.+...+.++++ |+.|..
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik----~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~--~~V~~sL~sllk~Dpk~tl~~ 138 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIK----ELPQFATGENLPRVADILTQLLQTDDSAEF--NLVNNALLSIFKMDAKGTLGG 138 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHH----HGGGGCCTTCHHHHHHHHHHHTTCCCHHHH--HHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHH----hhHHHhhhhhhhhHHHHHHHHHhccchHHH--HHHHHHHHHHHhcChHHHHHH
Confidence 34555666664433332223333 366678887777777766666654432221 333444444443 222222
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCchhHH-------HHHHHhhccHHHHHHHHHHHHHhHHHHhcCCChhHH
Q 037508 279 VIQYCVKHFSHEDTKYLLNEVADNCYGIATDKSGCCV-------LQHCVEYSKGAQRERLVAEIIANALLLAEDCYGNYV 351 (449)
Q Consensus 279 ViQ~~L~~~~~~~~~~i~~~l~~~~~~ls~~k~GS~V-------vq~~L~~~~~~~~~~il~~l~~~l~~L~~d~~Gn~V 351 (449)
+...+.. +....|+.++.-+..++..+-...++..+ +.++|+--+.+.-..+++-+ .. ..+..+..|.--
T Consensus 139 lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL-~~-lkl~~t~~g~qe 215 (507)
T 3u0r_A 139 LFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL-SG-LKSLQTVSGRQQ 215 (507)
T ss_dssp HHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH-HT-SGGGSSHHHHHH
T ss_pred HHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHH-Hh-cccccCchHHHH
Confidence 2223333 34555666666666666655555443222 11222212222222222221 11 122233322211
Q ss_pred H-HHHh---------ccCchhHHHHHHHHHHhhhhhhcCCcchhHHHHHHHh
Q 037508 352 V-QHLL---------ALRVPQITASLLRQLEGHYVSFSCNKYGSNVVERCLL 393 (449)
Q Consensus 352 I-Q~lL---------~~~~~~~r~~li~~L~~~~~~Ls~~k~GS~Vvek~l~ 393 (449)
+ .-+. +..+++.-++++..+.-.+.-.+....+++.+.-+.+
T Consensus 216 Lv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 216 LVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp HHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 1 1111 1135667778888888777777777777666655544
No 17
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=25.52 E-value=2.7e+02 Score=25.35 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=66.6
Q ss_pred HHHHHHhcCccccHHHHHhhccCCHHHHHHHHHHHHHHHHHhhcCCCccH-------HHHHHHhcCCHHHHHHHHHHhhC
Q 037508 153 GNIVALAKDQYGCRHLQRTMSSLPKEEIEMIFVEVIDRVCELMIDPFGNY-------VVQKLVELCSEEQRTRILLMLTN 225 (449)
Q Consensus 153 g~i~~La~d~~gsrvlQ~lLe~~~~e~~~~i~~ei~~~~~~L~~d~~Gn~-------VvQklle~~~~~~~~~i~~~l~~ 225 (449)
..++.+.+=+-|-+++-+++.+-+.+++-.|+..|..|+..|...--.-. .+.+++..++-.....++..+..
T Consensus 71 ~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~vL~~L~~~~~~~I~~~~l~~l~~~l~~Ll~ 150 (248)
T 2xes_A 71 DHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMN 150 (248)
T ss_dssp HHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTCCGGGGHHHHHHHHTTCCHHHHHHHHHHHTS
T ss_pred CceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55778888889999999999999999999999999988777743211111 23344455666555555555532
Q ss_pred C--chhhHHHhcCCchhHHHHHHHHhc
Q 037508 226 D--DFQLVRICLNTHGIRAVLKLLENL 250 (449)
Q Consensus 226 ~--~~~l~~L~~~~~G~~VvQklle~~ 250 (449)
. ..++.-+++++.|.-++-.+++++
T Consensus 151 ~~~~~~l~~v~~~k~GlSlLt~LLsRa 177 (248)
T 2xes_A 151 LPGSPHLTAVLQNKFGLSLLLILLSRG 177 (248)
T ss_dssp STTTTCCHHHHTSHHHHHHHHHHHHHH
T ss_pred ccCCccceeeeecCchHHHHHHHHHHH
Confidence 1 124566677777777777777663
No 18
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=25.27 E-value=2e+02 Score=26.28 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=37.2
Q ss_pred HhHHhhhcCCchhHHHHHHHhhccHHHHHHHHHHHHHhHHHHhc
Q 037508 301 DNCYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALLLAE 344 (449)
Q Consensus 301 ~~~~~ls~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~l~~L~~ 344 (449)
..+..+-.-+-|=.++-+++.+-+.+++..++..+..++..|..
T Consensus 71 ~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~ 114 (248)
T 2xes_A 71 DHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIK 114 (248)
T ss_dssp HHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHH
T ss_pred CceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhh
Confidence 45677777788999999999999999999999999998876643
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=24.80 E-value=3.2e+02 Score=23.15 Aligned_cols=197 Identities=16% Similarity=0.103 Sum_probs=98.5
Q ss_pred hcCCCccHHHHHHHhcCCHHHHHHHHHHhhCCchhhHHHhcCCchhHHHHHHHHhcCchHHHHHHHHHHhhchhchhcCc
Q 037508 195 MIDPFGNYVVQKLVELCSEEQRTRILLMLTNDDFQLVRICLNTHGIRAVLKLLENLTNPQQISLVLAALRPGAVTLTKDT 274 (449)
Q Consensus 195 ~~d~~Gn~VvQklle~~~~~~~~~i~~~l~~~~~~l~~L~~~~~G~~VvQklle~~~~~~~~~~I~~el~~~~~~L~~d~ 274 (449)
..|..|.-.+......+..+..+.+++.+......+ -..+..|.-.+..+...- ..+.++.+++ .....-..+.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~---~g~~~~~~~~ 77 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL--DIYNNLRQTPLHLAVITT-LPSVVRLLVT---AGASPMALDR 77 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTT-CHHHHHHHHH---TTCCTTCCCT
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC--CcccccCCCHHHHHHHcC-CHHHHHHHHH---cCCCccccCC
Confidence 457888889999999999888887877543321111 123455666666666553 2222232222 1122234466
Q ss_pred CccHHHHHHHhcCChhhHHHHHHHHHHh-HHhhhcCCchhHHHHHHHhhccHHHHHHHHHHHHHhHHH-HhcC-CChhHH
Q 037508 275 NGHYVIQYCVKHFSHEDTKYLLNEVADN-CYGIATDKSGCCVLQHCVEYSKGAQRERLVAEIIANALL-LAED-CYGNYV 351 (449)
Q Consensus 275 ~Gn~ViQ~~L~~~~~~~~~~i~~~l~~~-~~~ls~~k~GS~Vvq~~L~~~~~~~~~~il~~l~~~l~~-L~~d-~~Gn~V 351 (449)
.|...+......+..+..+.+++..... ..--..+..|...+.........+..+ .+.+.-.. -..+ ..|...
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~g~t~ 153 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ----LLLERGADIDAVDIKSGRSP 153 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTTCCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHH----HHHHcCCCcccccccCCCcH
Confidence 7777777777766555444333321100 011123456666666666555443333 33322111 1223 567767
Q ss_pred HHHHhccCchhHHHHHHHHHHhhhhhh-cCCcchhHHHHHHHhhcCHHHHHHHHHHHhc
Q 037508 352 VQHLLALRVPQITASLLRQLEGHYVSF-SCNKYGSNVVERCLLESGEEQSTRIIIELLR 409 (449)
Q Consensus 352 IQ~lL~~~~~~~r~~li~~L~~~~~~L-s~~k~GS~Vvek~l~~~~~~~r~~ii~ell~ 409 (449)
+..+...+..+.-+.|++. -..+ ..+..|.-.+..+...... .+++.|++
T Consensus 154 L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~ 204 (241)
T 1k1a_A 154 LIHAVENNSLSMVQLLLQH----GANVNAQMYSGSSALHSASGRGLL----PLVRTLVR 204 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHh
Confidence 7777666555444444432 1222 2355666666655555544 34444543
No 20
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=23.57 E-value=4.4e+02 Score=24.30 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=41.0
Q ss_pred ChhHHHHHHhccC--------chhHHHHHHHHHHhhhhhhcCCcch---hHHHHHHHhhcCHHHHHHHHHHHhc----CC
Q 037508 347 YGNYVVQHLLALR--------VPQITASLLRQLEGHYVSFSCNKYG---SNVVERCLLESGEEQSTRIIIELLR----SP 411 (449)
Q Consensus 347 ~Gn~VIQ~lL~~~--------~~~~r~~li~~L~~~~~~Ls~~k~G---S~Vvek~l~~~~~~~r~~ii~ell~----~~ 411 (449)
.+.|++|++|... +++-...+...|..-+..|..++.+ .||+...+.-++...-...++..+. ++
T Consensus 164 vAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~ 243 (268)
T 2fv2_A 164 VATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDT 243 (268)
T ss_dssp HHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSS
T ss_pred HHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhCh
Confidence 4678888888652 3343445555555556666666544 2333333333333322334444544 22
Q ss_pred Chhhhc-cCcChhHHHHHHhh
Q 037508 412 NVSMLL-MHPFGNYVIQSALL 431 (449)
Q Consensus 412 ~l~~L~-~d~yGnyVvq~lL~ 431 (449)
.+..++ .|+-..--++.++.
T Consensus 244 tf~~~l~~D~~~k~~l~qLl~ 264 (268)
T 2fv2_A 244 TFAQVLKDDTTTKRWLAQLVK 264 (268)
T ss_dssp TTHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 333322 24444444455543
No 21
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=21.88 E-value=31 Score=23.60 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.6
Q ss_pred CcCCcccccccccccc-cccCCccc
Q 037508 51 DETDLSAYFSHLNVND-RIFDNPVH 74 (449)
Q Consensus 51 ~~~~~~~~~~~~~~~~-~~~~~~~~ 74 (449)
-++|+|-=..+||++| +||.|.+-
T Consensus 6 ~EpDLP~DL~~lnte~meifrN~~~ 30 (57)
T 2ka4_B 6 PEPDLPHDLRHLNTEPMEIFRNSVK 30 (57)
T ss_dssp CCCCCCHHHHTSCCTGGGGGTTSCC
T ss_pred CCCCccHHHHHhChHHHHHHhcccc
Confidence 3678888889999997 78988765
No 22
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=21.04 E-value=4.5e+02 Score=24.23 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=5.0
Q ss_pred CccHHHHHHH
Q 037508 199 FGNYVVQKLV 208 (449)
Q Consensus 199 ~Gn~VvQkll 208 (449)
.+.|++||++
T Consensus 164 vAtfIlqKIL 173 (268)
T 2fv2_A 164 VATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3445555554
Done!