AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>037509
MLIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCV
IHPSLSYVIVDYKVSKHQQRRKLAAIGGGSERFRNDIFILIRHFSLVG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G03060 AT3G03060 AT3G03060	protein from Arabidopsis thaliana	1.1e-05
BLAST match view associations BLAST with AT5G16930 AT5G16930 AT5G16930	protein from Arabidopsis thaliana	1.5e-05
BLAST match view associations BLAST with AT2G18330 AT2G18330 AT2G18330	protein from Arabidopsis thaliana	5.0e-05
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037509
        (108 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2097690 - symbol:AT3G03060 species:3702 "Arabi...   113  1.1e-05   1
TAIR|locus:2148206 - symbol:AT5G16930 species:3702 "Arabi...   112  1.5e-05   1
TAIR|locus:2062170 - symbol:AT2G18330 species:3702 "Arabi...   107  5.0e-05   1


>TAIR|locus:2097690 [details] [associations]
            symbol:AT3G03060 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005618
            "cell wall" evidence=IDA] [GO:0009505 "plant-type cell wall"
            evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IDA]
            InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
            GO:GO:0005524 EMBL:CP002686 GO:GO:0008270 GO:GO:0009505
            GO:GO:0017111 eggNOG:COG1223 InterPro:IPR021911 Pfam:PF12037
            OMA:QKMAWLS EMBL:AK226793 IPI:IPI00536262 RefSeq:NP_186956.2
            UniGene:At.53165 ProteinModelPortal:Q0WVF7 SMR:Q0WVF7 STRING:Q0WVF7
            PaxDb:Q0WVF7 PRIDE:Q0WVF7 EnsemblPlants:AT3G03060.1 GeneID:821146
            KEGG:ath:AT3G03060 TAIR:At3g03060 InParanoid:Q0WVF7
            PhylomeDB:Q0WVF7 ProtClustDB:CLSN2685560 Genevestigator:Q0WVF7
            Uniprot:Q0WVF7
        Length = 628

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query:    18 PGK-EECFKLLKLYLD-KYTADDTLMEAAAKIEGIS-------------AGYESENCVIH 62
             PG  +  FK  +  ++ K   ++ L EAAAK EG S             A Y SE+CV+ 
Sbjct:   542 PGLFDRLFKKEQQKIEIKGVTEELLKEAAAKTEGFSGREIAKLMASVQAAVYGSEDCVLD 601

Query:    63 PSLSYVIVDYKVSKHQQRRKLAAI 86
               L   +VDYKV++HQQRRKLA +
Sbjct:   602 SMLFREVVDYKVAEHQQRRKLAGV 625

 Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query:    11 ELLEFPLPGKEECFKLLKLYLDKYTAD 37
             E+LEFPLPG+EE FKLL LYL+KY A+
Sbjct:   510 EVLEFPLPGEEERFKLLNLYLEKYIAE 536


>TAIR|locus:2148206 [details] [associations]
            symbol:AT5G16930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            Pfam:PF00004 SMART:SM00382 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR HSSP:Q01853 GO:GO:0017111
            eggNOG:COG1223 HOGENOM:HOG000231291 InterPro:IPR021911 Pfam:PF12037
            OMA:QRYDEQM ProtClustDB:CLSN2685560 EMBL:AY080881 EMBL:AY133778
            IPI:IPI00526600 RefSeq:NP_197195.2 UniGene:At.31619
            UniGene:At.49031 ProteinModelPortal:Q8RXI0 SMR:Q8RXI0 PaxDb:Q8RXI0
            PRIDE:Q8RXI0 EnsemblPlants:AT5G16930.1 GeneID:831556
            KEGG:ath:AT5G16930 TAIR:At5g16930 InParanoid:Q8RXI0
            PhylomeDB:Q8RXI0 ArrayExpress:Q8RXI0 Genevestigator:Q8RXI0
            Uniprot:Q8RXI0
        Length = 644

 Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 32/90 (35%), Positives = 49/90 (54%)

Query:    18 PGK-EECFKLLKLYLD-KYTADDTLMEAAAKIEGIS-------------AGYESENCVIH 62
             PG  +  FK  +  ++ K   +D L EAAAK +G S             A Y S NC++ 
Sbjct:   554 PGLLQSLFKKEQQTIEIKGVTEDLLKEAAAKTKGFSGREIAKLMASVQAAVYGSANCLLD 613

Query:    63 PSLSYVIVDYKVSKHQQRRKLAAIGGGSER 92
              +L   ++DYKV++HQQR+KLA    G+++
Sbjct:   614 ANLFREVIDYKVAEHQQRKKLAGTDAGNKK 643

 Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query:    11 ELLEFPLPGKEECFKLLKLYLDKYTADDTL 40
             E LEFPLPG+EE FKLL LYL+KY +   L
Sbjct:   522 ETLEFPLPGEEERFKLLNLYLEKYISKTNL 551


>TAIR|locus:2062170 [details] [associations]
            symbol:AT2G18330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
            binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0016887 "ATPase activity" evidence=ISS] [GO:0017111
            "nucleoside-triphosphatase activity" evidence=IEA] [GO:0000741
            "karyogamy" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
            biosynthetic process" evidence=RCA] [GO:0009560 "embryo sac egg
            cell differentiation" evidence=RCA] [GO:0009909 "regulation of
            flower development" evidence=RCA] [GO:0034968 "histone lysine
            methylation" evidence=RCA] [GO:0005739 "mitochondrion"
            evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
            InterPro:IPR003960 Pfam:PF00004 PROSITE:PS00674 SMART:SM00382
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
            HSSP:Q01853 GO:GO:0017111 EMBL:AC006439 eggNOG:COG1223
            HOGENOM:HOG000231291 OMA:MMDTRVQ InterPro:IPR021911 Pfam:PF12037
            ProtClustDB:CLSN2685560 EMBL:AY054494 EMBL:AY093265 IPI:IPI00524126
            PIR:A84563 RefSeq:NP_565435.1 UniGene:At.13881
            ProteinModelPortal:Q9ZPW5 SMR:Q9ZPW5 STRING:Q9ZPW5 PaxDb:Q9ZPW5
            PRIDE:Q9ZPW5 EnsemblPlants:AT2G18330.1 GeneID:816348
            KEGG:ath:AT2G18330 TAIR:At2g18330 InParanoid:Q9ZPW5
            PhylomeDB:Q9ZPW5 ArrayExpress:Q9ZPW5 Genevestigator:Q9ZPW5
            Uniprot:Q9ZPW5
        Length = 636

 Score = 107 (42.7 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 29/84 (34%), Positives = 46/84 (54%)

Query:    11 ELLEFPLPGKEECFKLLKLYLDKYT-ADDTLMEAAAKIE--GISAGYESENCVIHPSLSY 67
             E++EFPLPG+EE FKLLKLYL+KY   DD   E  + ++   +    +S+   I   L+ 
Sbjct:   509 EVIEFPLPGEEERFKLLKLYLNKYLMGDDKKGEKDSNLKWSNLFKKKKSQKITIEGDLTD 568

Query:    68 VIVDYKVSKHQ--QRRKLAAIGGG 89
              ++     K +    R++A +  G
Sbjct:   569 QVIKEAAKKTEGFSGREIAKLVAG 592

 Score = 96 (38.9 bits), Expect = 0.00075, P = 0.00075
 Identities = 29/79 (36%), Positives = 39/79 (49%)

Query:    25 KLLKLYLDKYTADDTLMEAAAKIEGIS--------AG-----YESENCVIHPSLSYVIVD 71
             K  K+ ++    D  + EAA K EG S        AG     Y  ++CV+   L   IVD
Sbjct:   556 KSQKITIEGDLTDQVIKEAAKKTEGFSGREIAKLVAGVQAAVYGRQDCVLDSQLFEEIVD 615

Query:    72 YKVSKHQQRRKLAAIGGGS 90
             YK+ +H QR +LA  GG S
Sbjct:   616 YKIEEHHQRIRLATEGGQS 634


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.140   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108       108   0.00091  102 3  11 22  0.41    30
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  112 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:02
  Total cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:02
  Start:  Mon May 20 22:50:02 2013   End:  Mon May 20 22:50:04 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
