BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037509
         (108 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
 pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
 pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
 pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
 pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
 pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
 pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
 pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
 pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
 pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
 pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
 pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
          Length = 638

 Score = 27.7 bits (60), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 36  ADDTLMEAAAKIEGISAGYESENCVIHPSLSYVIVDYKVSKHQQRRKLAAIGGGSERFRN 95
           A D + +  A I  + AG  ++  V++ S       Y +    +    A + GG +RF N
Sbjct: 423 AIDNMSQGGAYINNLIAGKMNQRKVLNRS-----TQYHLPHSTEVAGFAFVYGGDDRFYN 477

Query: 96  DIFI 99
           +IFI
Sbjct: 478 NIFI 481


>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
           Proteasome
          Length = 434

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 13  LEFPLPGKEECFKLLKLYLDKYTADDTL 40
           +EFPLP ++   ++L+++  K T DD +
Sbjct: 347 IEFPLPSEDSRAQILQIHSRKMTTDDDI 374


>pdb|2KWA|A Chain A, 1h, 13c And 15n Backbone And Side Chain Resonance
           Assignments Of The N-Terminal Domain Of The Histidine
           Kinase Inhibitor Kipi From Bacillus Subtilis
          Length = 101

 Score = 26.6 bits (57), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 14  EFPLPGKEEC---FKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCVIHPSLSYVIV 70
           E P PG  EC   F  L ++ D Y     L +      GIS+ +ES    +   L+ +  
Sbjct: 42  EQPFPGFIECIPAFTSLTVFYDMYEVYKHLPQ------GISSPFESVKRDVEERLAEIAE 95

Query: 71  DYKVSK 76
           DY+V++
Sbjct: 96  DYEVNR 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,981
Number of Sequences: 62578
Number of extensions: 106013
Number of successful extensions: 217
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)