BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037509
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 30/100 (30%)
Query: 11 ELLEFPLPGKEECFKLLKLYLDKYTADDTL-----------------MEAAAKIEGISA- 52
E++ F LPG+EE +L+++Y DKY E A EG+S
Sbjct: 517 EMVHFDLPGQEERERLVRMYFDKYVLKPATEGKQRLKLAQFDYGRKCSEVARLTEGMSGR 576
Query: 53 ------------GYESENCVIHPSLSYVIVDYKVSKHQQR 80
Y SE+ V+ ++ V V +HQQ+
Sbjct: 577 EIAQLAVSWQATAYASEDGVLTEAMMDTRVQDAVQQHQQK 616
>sp|A8GM32|RS2_RICAH 30S ribosomal protein S2 OS=Rickettsia akari (strain Hartford)
GN=rpsB PE=3 SV=1
Length = 295
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTL--MEAAAKIEGISAGYESENCVIHP 63
++ N + +++P+PG ++ + ++LY + AD L +E + K G+ G +H
Sbjct: 193 TNSNPDNVDYPIPGNDDSIRSIRLYC-RLFADAALQGLEESMKASGVDMG------AMHE 245
Query: 64 SLSYVIVDYKVSKHQQRRKLA 84
++ VSK +Q +K +
Sbjct: 246 HTDNALISKNVSKLKQAKKFS 266
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 11 ELLEFPLPGKEECFKLLKLYLDKY 34
E++ F LPG EE +L++LY DKY
Sbjct: 465 EIVHFDLPGLEERERLVRLYFDKY 488
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 11 ELLEFPLPGKEECFKLLKLYLDKY 34
E++ F LPG EE +L++LY DKY
Sbjct: 465 EIVHFDLPGLEERERLVRLYFDKY 488
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 11 ELLEFPLPGKEECFKLLKLYLDKY 34
E++ F LPG EE +L++LY DKY
Sbjct: 465 EIVHFDLPGLEERERLVRLYFDKY 488
>sp|P66547|RS2_XYLFT 30S ribosomal protein S2 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=rpsB PE=3 SV=1
Length = 266
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESE 57
++++ L+++P+PG ++ + ++LY A D ++E A + +A E E
Sbjct: 189 TNYDPSLVDYPIPGNDDAIRAVQLYA--RAAADAVLEGKAAMPNAAAVREEE 238
>sp|P66546|RS2_XYLFA 30S ribosomal protein S2 OS=Xylella fastidiosa (strain 9a5c)
GN=rpsB PE=3 SV=1
Length = 266
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESE 57
++++ L+++P+PG ++ + ++LY A D ++E A + +A E E
Sbjct: 189 TNYDPSLVDYPIPGNDDAIRAVQLYA--RAAADAVLEGKAAMPNAAAVREEE 238
>sp|B2I9U3|RS2_XYLF2 30S ribosomal protein S2 OS=Xylella fastidiosa (strain M23) GN=rpsB
PE=3 SV=1
Length = 266
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESE 57
++++ L+++P+PG ++ + ++LY A D ++E A + +A E E
Sbjct: 189 TNYDPSLVDYPIPGNDDAIRAVQLYA--RAAADAVLEGKAAMPNAAAVREEE 238
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 10 VELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCVIHPSLSYVI 69
+ ++EFPLP C + LD +D L+ AA + EN I P V
Sbjct: 484 LSMVEFPLPPHLTCAVIRAASLD---CEDLLLPIAAMLS-------VENVFIRP----VD 529
Query: 70 VDYKVSKHQQRRKLAAIGGGSERF 93
+Y+ Q+ R+LAA GG F
Sbjct: 530 PEYQKEAEQKHRELAAKAGGFNDF 553
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 10 VELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCVIHPSLSYVI 69
+ ++EFPLP C + LD +D L+ AA + EN I P V
Sbjct: 484 LSMVEFPLPPHLTCAVIRAASLD---CEDLLLPIAAMLS-------VENVFIRP----VD 529
Query: 70 VDYKVSKHQQRRKLAAIGGGSERF 93
+Y+ Q+ R+LAA GG F
Sbjct: 530 PEYQKEAEQRHRELAAKAGGFNDF 553
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 10 VELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCVIHPSLSYVI 69
+ ++EFPLP C + LD +D L+ AA + EN I P V
Sbjct: 484 LSMVEFPLPPHLTCAVIKAASLD---CEDLLLPIAAMLS-------VENVFIRP----VD 529
Query: 70 VDYKVSKHQQRRKLAAIGGGSERF 93
+Y+ Q+ R+LAA GG F
Sbjct: 530 PEYQKEAEQRHRELAAKAGGFNDF 553
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 10 VELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISAGYESENCVIHPSLSYVI 69
+ ++EFPLP C + LD +D L+ AA + EN I P V
Sbjct: 484 LSMVEFPLPPHLTCAVIKAASLD---CEDLLLPIAAMLS-------VENVFIRP----VD 529
Query: 70 VDYKVSKHQQRRKLAAIGGGSERF 93
+Y+ Q+ R+LAA GG F
Sbjct: 530 PEYQKEAEQRHRELAAKAGGFNDF 553
>sp|A5FZ67|RS2_ACICJ 30S ribosomal protein S2 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsB PE=3 SV=1
Length = 256
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISA 52
S+ N E + +P+PG ++ + + LY D + A A ++GISA
Sbjct: 190 SNSNPEGVTYPIPGNDDAIRAITLYCD--------LVANAVLDGISA 228
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 11 ELLEFPLPGKEECFKLLKLYLDKY 34
E++ F LP +EE +L+++Y DKY
Sbjct: 468 EMVSFELPQREERERLVRMYFDKY 491
>sp|Q68XV5|RS2_RICTY 30S ribosomal protein S2 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsB PE=3 SV=1
Length = 295
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTL--MEAAAKIEGISAGYESENCVIHP 63
++ N + + +P+PG ++ + ++LY + AD L +E + K+ G+ G E+
Sbjct: 193 TNSNPDNINYPIPGNDDSIRSIRLYCSLF-ADAALQGLEESMKVSGVDIGTMQEHT---- 247
Query: 64 SLSYVIVDYKVSKHQQRRKLA 84
+ +SK +Q +K +
Sbjct: 248 --DKALTSKTISKLKQTKKFS 266
>sp|Q9ZE61|RS2_RICPR 30S ribosomal protein S2 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsB PE=3 SV=1
Length = 296
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTL--MEAAAKIEGISAG 53
++ N + +++P+PG ++ + ++LY + AD L +E + K+ G+ G
Sbjct: 193 TNSNPDNVDYPIPGNDDSIRSIRLYCSLF-ADAALQGLEESMKVSGVDIG 241
>sp|A8F0I9|RS2_RICM5 30S ribosomal protein S2 OS=Rickettsia massiliae (strain Mtu5)
GN=rpsB PE=3 SV=2
Length = 295
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTL--MEAAAKIEGISAGYESENCVIHP 63
++ N + +++P+PG ++ + ++LY + AD L +E + K G+ G E+
Sbjct: 193 TNSNPDNVDYPIPGNDDSIRSIRLYCSLF-ADAALQGLEESMKASGVDMGAMQEHT---- 247
Query: 64 SLSYVIVDYKVSKHQQRRKLA 84
+ VSK +Q +K +
Sbjct: 248 --DKALTSKNVSKLKQAKKFS 266
>sp|Q92JF5|RS2_RICCN 30S ribosomal protein S2 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsB PE=3 SV=1
Length = 295
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTL--MEAAAKIEGISAGYESENCVIHP 63
++ N + +++P+PG ++ + ++LY + AD L +E + K G+ G E+
Sbjct: 193 TNSNPDNVDYPIPGNDDSIRAIRLYCSLF-ADAALQGLEESMKASGVDMGAMQEHT---- 247
Query: 64 SLSYVIVDYKVSKHQQRRKLA 84
+ VSK +Q +K +
Sbjct: 248 --DKGLTSKNVSKLKQTKKFS 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,959,944
Number of Sequences: 539616
Number of extensions: 1366876
Number of successful extensions: 3401
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3396
Number of HSP's gapped (non-prelim): 25
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)