Query 037509
Match_columns 108
No_of_seqs 177 out of 364
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 99.9 5.4E-27 1.2E-31 198.3 7.5 88 2-90 499-628 (630)
2 COG1222 RPT1 ATP-dependent 26S 99.1 3.4E-11 7.4E-16 100.4 4.2 72 4-75 306-394 (406)
3 KOG0730 AAA+-type ATPase [Post 98.9 2.3E-10 5E-15 100.6 1.7 49 3-51 585-637 (693)
4 PTZ00454 26S protease regulato 98.9 3.8E-09 8.2E-14 87.6 5.7 81 3-83 299-396 (398)
5 KOG0737 AAA+-type ATPase [Post 98.8 1.8E-08 3.8E-13 84.1 8.0 49 3-51 246-296 (386)
6 KOG0739 AAA+-type ATPase [Post 98.7 7.9E-09 1.7E-13 85.9 3.0 49 3-51 284-335 (439)
7 COG1223 Predicted ATPase (AAA+ 98.7 1.5E-08 3.2E-13 83.0 4.2 49 3-51 269-319 (368)
8 CHL00195 ycf46 Ycf46; Provisio 98.7 4.5E-08 9.8E-13 83.4 6.5 85 3-88 375-485 (489)
9 PRK03992 proteasome-activating 98.6 3.7E-08 8E-13 80.8 4.9 75 3-77 285-376 (389)
10 KOG0738 AAA+-type ATPase [Post 98.6 4.2E-08 9E-13 83.3 4.9 49 3-51 367-417 (491)
11 KOG0652 26S proteasome regulat 98.6 5.3E-08 1.1E-12 80.2 4.1 70 7-76 331-415 (424)
12 PTZ00361 26 proteosome regulat 98.5 2.1E-07 4.6E-12 78.4 5.6 73 3-75 337-426 (438)
13 KOG0728 26S proteasome regulat 98.5 1.5E-07 3.3E-12 77.1 4.5 74 7-80 307-395 (404)
14 TIGR01243 CDC48 AAA family ATP 98.5 1.8E-07 4E-12 81.9 5.3 49 3-51 605-657 (733)
15 TIGR01242 26Sp45 26S proteasom 98.5 2.2E-07 4.7E-12 74.9 5.1 70 3-72 276-362 (364)
16 TIGR01241 FtsH_fam ATP-depende 98.4 5.1E-07 1.1E-11 75.8 6.1 72 3-74 208-296 (495)
17 PRK10733 hflB ATP-dependent me 98.4 6.2E-07 1.3E-11 78.2 5.6 70 3-72 305-391 (644)
18 COG0464 SpoVK ATPases of the A 98.3 9.7E-07 2.1E-11 73.5 4.9 49 3-51 393-447 (494)
19 CHL00176 ftsH cell division pr 98.2 3.1E-06 6.8E-11 74.2 6.2 71 4-74 337-424 (638)
20 KOG0740 AAA+-type ATPase [Post 98.2 2.2E-06 4.8E-11 72.6 4.9 49 3-51 305-356 (428)
21 KOG0734 AAA+-type ATPase conta 98.0 1.6E-06 3.5E-11 76.3 0.9 45 7-51 460-506 (752)
22 KOG0733 Nuclear AAA ATPase (VC 97.9 2.2E-05 4.7E-10 70.0 5.8 48 4-51 663-718 (802)
23 KOG0731 AAA+-type ATPase conta 97.9 1.2E-05 2.5E-10 72.3 3.5 71 7-77 471-557 (774)
24 KOG0735 AAA+-type ATPase [Post 97.7 3E-05 6.4E-10 70.1 3.6 46 7-52 824-871 (952)
25 COG0465 HflB ATP-dependent Zn 97.6 4.4E-05 9.6E-10 67.0 3.6 49 3-51 303-355 (596)
26 CHL00206 ycf2 Ycf2; Provisiona 97.6 7E-05 1.5E-09 73.0 4.7 75 3-77 1787-1881(2281)
27 KOG0726 26S proteasome regulat 97.4 3E-05 6.4E-10 64.8 0.1 86 7-92 345-437 (440)
28 KOG0741 AAA+-type ATPase [Post 97.4 4.1E-05 8.9E-10 67.6 0.9 49 3-51 384-440 (744)
29 TIGR03689 pup_AAA proteasome A 97.3 0.00086 1.9E-08 58.0 7.5 32 3-34 348-381 (512)
30 KOG0727 26S proteasome regulat 97.3 7.3E-05 1.6E-09 61.7 0.9 71 7-77 315-400 (408)
31 TIGR01243 CDC48 AAA family ATP 97.3 0.00034 7.4E-09 61.6 4.8 48 4-51 330-381 (733)
32 KOG0729 26S proteasome regulat 97.3 7.2E-05 1.6E-09 62.1 0.2 71 7-77 337-422 (435)
33 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0012 2.7E-08 59.2 4.0 45 7-51 350-396 (802)
34 KOG0730 AAA+-type ATPase [Post 96.7 0.0022 4.8E-08 57.3 4.6 49 3-51 335-386 (693)
35 KOG0732 AAA+-type ATPase conta 96.5 0.0016 3.4E-08 60.7 2.4 46 6-51 426-474 (1080)
36 PLN00020 ribulose bisphosphate 96.4 0.0041 8.9E-08 52.8 4.4 47 3-51 283-332 (413)
37 KOG0736 Peroxisome assembly fa 96.3 0.011 2.3E-07 54.3 6.7 75 5-79 550-659 (953)
38 KOG0735 AAA+-type ATPase [Post 95.6 0.019 4.1E-07 52.6 4.8 75 7-81 562-656 (952)
39 TIGR00635 ruvB Holliday juncti 94.4 0.15 3.2E-06 39.5 6.4 70 3-72 144-228 (305)
40 PRK00080 ruvB Holliday junctio 94.4 0.14 2.9E-06 40.8 6.2 70 3-72 165-249 (328)
41 CHL00195 ycf46 Ycf46; Provisio 94.1 0.12 2.6E-06 44.5 5.7 68 6-74 130-209 (489)
42 TIGR02881 spore_V_K stage V sp 93.7 0.43 9.4E-06 36.7 7.6 72 3-78 163-239 (261)
43 CHL00181 cbbX CbbX; Provisiona 93.1 0.81 1.8E-05 36.4 8.4 75 3-83 181-260 (287)
44 TIGR00362 DnaA chromosomal rep 92.8 0.14 3.1E-06 41.8 3.9 73 3-75 251-339 (405)
45 KOG0651 26S proteasome regulat 91.8 0.065 1.4E-06 45.1 0.7 45 7-51 292-338 (388)
46 TIGR02639 ClpA ATP-dependent C 91.6 0.32 7E-06 43.2 4.9 70 3-73 331-429 (731)
47 TIGR03015 pepcterm_ATPase puta 91.1 0.79 1.7E-05 34.5 6.0 69 4-72 178-265 (269)
48 PRK11034 clpA ATP-dependent Cl 91.0 0.42 9.1E-06 43.3 5.1 48 3-51 335-389 (758)
49 TIGR03345 VI_ClpV1 type VI sec 90.9 0.46 9.9E-06 43.4 5.2 48 3-51 336-390 (852)
50 TIGR02880 cbbX_cfxQ probable R 90.6 1.8 3.8E-05 34.3 7.8 76 3-82 180-258 (284)
51 TIGR02397 dnaX_nterm DNA polym 89.6 1.3 2.9E-05 34.7 6.3 67 2-71 161-240 (355)
52 PRK00149 dnaA chromosomal repl 88.5 0.48 1E-05 39.5 3.3 73 3-75 263-351 (450)
53 TIGR03346 chaperone_ClpB ATP-d 88.5 0.93 2E-05 41.2 5.3 48 3-51 322-376 (852)
54 KOG0736 Peroxisome assembly fa 87.6 2.1 4.5E-05 39.9 6.9 42 7-48 832-876 (953)
55 KOG0744 AAA+-type ATPase [Post 86.7 2.2 4.8E-05 36.4 6.2 75 3-78 312-419 (423)
56 PRK10865 protein disaggregatio 84.7 1.8 3.9E-05 39.6 5.0 48 3-51 327-381 (857)
57 COG0464 SpoVK ATPases of the A 84.1 1.7 3.6E-05 36.5 4.3 46 6-51 138-185 (494)
58 PRK12402 replication factor C 81.3 4.7 0.0001 31.2 5.6 68 3-71 170-247 (337)
59 TIGR02928 orc1/cdc6 family rep 81.3 8.8 0.00019 30.3 7.2 70 4-73 184-274 (365)
60 PRK14088 dnaA chromosomal repl 81.1 2.5 5.5E-05 35.6 4.3 72 4-75 247-334 (440)
61 PHA02544 44 clamp loader, smal 80.6 4.4 9.4E-05 31.5 5.2 32 2-34 145-176 (316)
62 PRK06645 DNA polymerase III su 80.0 5.6 0.00012 34.5 6.1 68 2-70 172-253 (507)
63 PRK14970 DNA polymerase III su 78.9 7.4 0.00016 31.2 6.1 67 2-71 152-231 (367)
64 TIGR00763 lon ATP-dependent pr 78.2 7.6 0.00017 35.0 6.6 29 3-32 478-506 (775)
65 PRK00440 rfc replication facto 78.0 5.4 0.00012 30.6 4.9 65 3-71 147-224 (319)
66 PRK13342 recombination factor 77.6 9.5 0.00021 31.5 6.6 70 3-74 137-220 (413)
67 PRK14961 DNA polymerase III su 77.0 8.8 0.00019 31.2 6.1 67 2-71 163-242 (363)
68 PRK09087 hypothetical protein; 73.5 6.4 0.00014 30.1 4.3 71 3-73 136-222 (226)
69 PRK08727 hypothetical protein; 73.5 7.7 0.00017 29.5 4.7 68 3-71 145-229 (233)
70 TIGR03420 DnaA_homol_Hda DnaA 73.1 8 0.00017 28.2 4.6 43 4-46 143-190 (226)
71 PRK11034 clpA ATP-dependent Cl 71.2 7 0.00015 35.6 4.5 53 3-57 638-702 (758)
72 PRK14953 DNA polymerase III su 70.8 13 0.00029 31.9 6.0 66 2-70 163-241 (486)
73 PRK06585 holA DNA polymerase I 70.4 13 0.00028 29.5 5.5 63 11-73 135-210 (343)
74 PRK00411 cdc6 cell division co 68.7 22 0.00047 28.4 6.5 69 5-73 193-282 (394)
75 TIGR00678 holB DNA polymerase 68.7 13 0.00029 26.7 4.9 45 2-50 140-184 (188)
76 PRK05907 hypothetical protein; 65.6 10 0.00022 30.8 4.0 65 13-77 129-207 (311)
77 PRK06893 DNA replication initi 64.5 15 0.00032 27.9 4.5 46 4-49 145-195 (229)
78 PRK12422 chromosomal replicati 64.0 16 0.00035 31.0 5.1 73 3-75 254-345 (445)
79 TIGR02639 ClpA ATP-dependent C 62.4 16 0.00035 32.6 5.1 51 4-56 635-697 (731)
80 PRK05574 holA DNA polymerase I 61.2 32 0.00069 26.8 6.0 64 10-74 138-214 (340)
81 PRK09111 DNA polymerase III su 61.0 27 0.00057 31.0 6.1 66 3-71 177-255 (598)
82 PRK04195 replication factor C 60.2 23 0.0005 29.9 5.4 65 6-70 148-222 (482)
83 PRK05563 DNA polymerase III su 59.6 28 0.00061 30.4 5.9 64 2-68 163-239 (559)
84 CHL00095 clpC Clp protease ATP 59.6 18 0.00038 32.9 4.8 51 4-56 705-767 (821)
85 TIGR01128 holA DNA polymerase 58.4 35 0.00077 26.0 5.7 61 10-71 103-176 (302)
86 CHL00095 clpC Clp protease ATP 58.1 20 0.00043 32.6 4.9 48 3-51 327-381 (821)
87 TIGR02902 spore_lonB ATP-depen 57.4 24 0.00052 30.5 5.1 45 2-47 248-295 (531)
88 PRK08084 DNA replication initi 56.5 26 0.00055 26.7 4.7 48 3-50 150-202 (235)
89 PRK14962 DNA polymerase III su 56.0 38 0.00081 29.1 6.0 66 3-71 162-240 (472)
90 PRK07133 DNA polymerase III su 54.4 40 0.00087 30.9 6.2 65 2-69 162-239 (725)
91 PRK14086 dnaA chromosomal repl 53.7 24 0.00052 31.7 4.6 73 3-75 429-517 (617)
92 PRK10787 DNA-binding ATP-depen 49.6 28 0.00061 31.8 4.5 29 3-32 479-507 (784)
93 TIGR02640 gas_vesic_GvpN gas v 49.5 22 0.00049 27.5 3.4 28 3-31 171-198 (262)
94 PRK10865 protein disaggregatio 47.5 35 0.00076 31.4 4.8 32 3-34 751-782 (857)
95 PLN03025 replication factor C 47.2 39 0.00085 26.7 4.5 66 2-69 143-219 (319)
96 PF05673 DUF815: Protein of un 46.7 26 0.00057 28.1 3.4 45 4-48 180-224 (249)
97 PRK14087 dnaA chromosomal repl 46.6 40 0.00086 28.6 4.7 69 5-73 260-348 (450)
98 TIGR02031 BchD-ChlD magnesium 45.7 55 0.0012 28.8 5.6 77 2-79 144-263 (589)
99 PRK07452 DNA polymerase III su 45.6 87 0.0019 24.5 6.2 65 8-72 117-198 (326)
100 PRK14958 DNA polymerase III su 45.0 51 0.0011 28.6 5.2 64 3-69 164-240 (509)
101 PF00308 Bac_DnaA: Bacterial d 43.7 53 0.0012 24.8 4.6 43 6-48 152-199 (219)
102 TIGR00382 clpX endopeptidase C 43.6 53 0.0011 27.9 5.0 28 3-30 303-330 (413)
103 PRK08903 DnaA regulatory inact 43.4 65 0.0014 23.8 5.0 45 5-49 142-191 (227)
104 PRK07217 replication factor A; 42.7 9.8 0.00021 31.5 0.5 33 4-36 26-59 (311)
105 PRK06620 hypothetical protein; 42.4 61 0.0013 24.5 4.7 48 3-50 130-182 (214)
106 PRK07940 DNA polymerase III su 42.3 64 0.0014 27.0 5.2 47 2-51 161-207 (394)
107 PRK05342 clpX ATP-dependent pr 42.2 56 0.0012 27.6 4.9 52 3-56 297-364 (412)
108 PRK14963 DNA polymerase III su 41.3 95 0.0021 26.9 6.3 64 3-70 161-237 (504)
109 PRK14955 DNA polymerase III su 40.3 45 0.00098 27.5 4.0 67 3-70 172-254 (397)
110 PRK14950 DNA polymerase III su 39.8 1.1E+02 0.0023 26.8 6.4 64 3-69 165-241 (585)
111 PRK07003 DNA polymerase III su 39.5 51 0.0011 30.9 4.5 49 2-51 163-214 (830)
112 PRK14954 DNA polymerase III su 39.3 88 0.0019 28.0 5.9 67 3-70 172-254 (620)
113 PRK14960 DNA polymerase III su 39.0 80 0.0017 29.1 5.6 64 3-69 163-239 (702)
114 PRK06647 DNA polymerase III su 38.7 98 0.0021 27.2 6.0 64 2-68 163-239 (563)
115 PRK14964 DNA polymerase III su 38.2 81 0.0018 27.5 5.4 64 3-69 161-237 (491)
116 PRK14957 DNA polymerase III su 38.1 98 0.0021 27.3 5.9 65 2-69 163-240 (546)
117 PRK05896 DNA polymerase III su 38.0 80 0.0017 28.4 5.4 65 2-69 163-240 (605)
118 PRK06305 DNA polymerase III su 35.7 94 0.002 26.4 5.3 65 2-69 165-242 (451)
119 TIGR02030 BchI-ChlI magnesium 35.7 1.1E+02 0.0025 25.0 5.7 77 2-79 189-314 (337)
120 KOG0997 Uncharacterized conser 35.2 25 0.00053 31.2 1.8 69 12-88 430-512 (523)
121 KOG0743 AAA+-type ATPase [Post 34.8 1.5E+02 0.0032 26.0 6.4 49 3-51 353-403 (457)
122 PRK13341 recombination factor 34.4 1.5E+02 0.0032 27.1 6.5 69 3-72 154-246 (725)
123 PRK07764 DNA polymerase III su 34.0 1.3E+02 0.0028 27.9 6.2 65 2-68 164-241 (824)
124 PRK05642 DNA replication initi 32.5 94 0.002 23.6 4.4 48 3-50 149-201 (234)
125 PRK14951 DNA polymerase III su 29.1 1.8E+02 0.0038 26.2 6.1 64 3-69 169-245 (618)
126 smart00350 MCM minichromosome 27.9 78 0.0017 27.1 3.6 31 3-33 371-402 (509)
127 cd03737 SOCS_SOCS3 SOCS (suppr 27.1 38 0.00082 20.1 1.1 25 4-34 13-38 (42)
128 PRK05629 hypothetical protein; 27.1 2.2E+02 0.0048 22.4 5.8 65 7-73 115-192 (318)
129 PRK08691 DNA polymerase III su 27.1 1E+02 0.0022 28.4 4.2 63 4-69 165-240 (709)
130 PRK14952 DNA polymerase III su 26.7 2.3E+02 0.005 25.2 6.4 66 2-69 162-240 (584)
131 PRK08451 DNA polymerase III su 26.7 2E+02 0.0043 25.4 5.9 63 2-67 161-236 (535)
132 PRK07914 hypothetical protein; 26.6 2.2E+02 0.0048 22.5 5.8 61 11-73 120-194 (320)
133 PHA02750 hypothetical protein; 26.5 2.1E+02 0.0046 22.5 5.4 94 10-103 58-172 (240)
134 PRK14956 DNA polymerase III su 26.2 1.6E+02 0.0034 25.9 5.1 64 2-68 165-241 (484)
135 PF05361 PP1_inhibitor: PKC-ac 25.9 1.1E+02 0.0023 23.0 3.5 37 15-51 80-118 (144)
136 PF00292 PAX: 'Paired box' dom 25.9 83 0.0018 22.8 2.9 58 16-75 17-90 (125)
137 PRK13407 bchI magnesium chelat 25.2 80 0.0017 26.0 3.1 30 2-31 186-216 (334)
138 PF01420 Methylase_S: Type I r 22.8 53 0.0012 22.0 1.4 20 12-31 130-149 (167)
139 TIGR03346 chaperone_ClpB ATP-d 22.3 1.1E+02 0.0024 28.1 3.6 30 4-33 749-778 (852)
140 PRK07994 DNA polymerase III su 21.7 2.2E+02 0.0048 25.8 5.3 65 2-69 163-240 (647)
141 COG0593 DnaA ATPase involved i 21.3 2E+02 0.0044 24.6 4.8 66 11-76 237-316 (408)
142 PRK09737 EcoKI restriction-mod 21.1 91 0.002 25.1 2.6 17 12-28 153-169 (461)
143 COG1466 HolA DNA polymerase II 21.0 2.6E+02 0.0057 22.3 5.2 67 11-78 133-212 (334)
144 COG0542 clpA ATP-binding subun 20.5 1.9E+02 0.0041 27.0 4.7 63 4-75 678-752 (786)
145 PRK14969 DNA polymerase III su 20.4 1.5E+02 0.0033 25.7 4.0 65 4-71 165-242 (527)
146 PF08849 DUF1819: Putative inn 20.1 1.3E+02 0.0029 22.2 3.1 69 14-85 43-140 (189)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.4e-27 Score=198.25 Aligned_cols=88 Identities=49% Similarity=0.684 Sum_probs=82.3
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-----------------------------hhhHHHHHHHccCcc-
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-----------------------------DDTLMEAAAKIEGIS- 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-----------------------------d~~l~elA~~TEGfS- 51 (108)
-|||+||||++|+||||++|||.+||++||+||+. +..|+|.|++|||||
T Consensus 499 DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 499 DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 48999999999999999999999999999999975 678999999999999
Q ss_pred ------------eEEecCCcccCHHHHHHHHHHHHHhhHHHHHHHhhcCCC
Q 037509 52 ------------AGYESENCVIHPSLSYVIVDYKVSKHQQRRKLAAIGGGS 90 (108)
Q Consensus 52 ------------aay~s~d~vLt~~~~~~~v~~~v~eh~qk~~~~~~~~~~ 90 (108)
+||||+|||||+++|+++|+++|.||+||+ |+..++..
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~-~La~e~~~ 628 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRM-WLAAEGSG 628 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH-HHhhcccc
Confidence 799999999999999999999999999999 77766643
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.4e-11 Score=100.45 Aligned_cols=72 Identities=26% Similarity=0.215 Sum_probs=62.7
Q ss_pred hhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----eEEecC---------CcccCHHHH
Q 037509 4 QLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----AGYESE---------NCVIHPSLS 66 (108)
Q Consensus 4 AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----aay~s~---------d~vLt~~~~ 66 (108)
|++| |||+.|+|||||.+.|.+||+++.+++.+ +++++.+|+.|+||| .|.|+| ..++|.+.|
T Consensus 306 ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF 385 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDF 385 (406)
T ss_pred hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHH
Confidence 5554 99999999999999999999999999976 789999999999999 355655 458899999
Q ss_pred HHHHHHHHH
Q 037509 67 YVIVDYKVS 75 (108)
Q Consensus 67 ~~~v~~~v~ 75 (108)
.+.++..+.
T Consensus 386 ~~Av~KV~~ 394 (406)
T COG1222 386 LKAVEKVVK 394 (406)
T ss_pred HHHHHHHHh
Confidence 999986655
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.3e-10 Score=100.59 Aligned_cols=49 Identities=31% Similarity=0.319 Sum_probs=46.1
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++| |||++|||||||.+.|.+||++++++++. ++++++||++|+|||
T Consensus 585 ~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 585 PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYS 637 (693)
T ss_pred HHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCC
Confidence 47777 99999999999999999999999999866 779999999999999
No 4
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.86 E-value=3.8e-09 Score=87.63 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=68.4
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.|++| |||..|+||+|+.++|..|++.+++++.. +.+++++|..|+||| .|+..+..++|.+.
T Consensus 299 pAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~d 378 (398)
T PTZ00454 299 PALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPKD 378 (398)
T ss_pred HHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 46776 99999999999999999999999998754 789999999999999 23444456899999
Q ss_pred HHHHHHHHHHhhHHHHHH
Q 037509 66 SYVIVDYKVSKHQQRRKL 83 (108)
Q Consensus 66 ~~~~v~~~v~eh~qk~~~ 83 (108)
|.+.+...+..+.+++.|
T Consensus 379 f~~A~~~v~~~~~~~~~~ 396 (398)
T PTZ00454 379 FEKGYKTVVRKTDRDYDF 396 (398)
T ss_pred HHHHHHHHHhccccchhc
Confidence 999999888877666655
No 5
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.8e-08 Score=84.14 Aligned_cols=49 Identities=31% Similarity=0.277 Sum_probs=46.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.||.||+..+++++||+.++|++||+.+|++..+ +.|+.++|.+|+|||
T Consensus 246 eAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 246 EAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYS 296 (386)
T ss_pred HHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCc
Confidence 6999999999999999999999999999998755 789999999999999
No 6
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=7.9e-09 Score=85.88 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=46.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS 51 (108)
+||.|||+++||+|||+..+|.+++++++-+... +.|+.++|++|||||
T Consensus 284 sAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 284 SAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred HHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 6999999999999999999999999999987643 899999999999999
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.70 E-value=1.5e-08 Score=83.01 Aligned_cols=49 Identities=35% Similarity=0.508 Sum_probs=46.8
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.||..||.+-|+|.||+.+||..|++.|.+++++ +.+++.+|++|.|||
T Consensus 269 ~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 269 PAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCC
Confidence 5899999999999999999999999999999865 889999999999999
No 8
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.67 E-value=4.5e-08 Score=83.38 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=64.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhc----hhhhHHHHHHHccCcc-------------eEEecCCcccCH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYT----ADDTLMEAAAKIEGIS-------------AGYESENCVIHP 63 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~----~d~~l~elA~~TEGfS-------------aay~s~d~vLt~ 63 (108)
.|++| |||+.++|++|+.++|.+|++.|+++.. .+.+++.+|+.|+||| .|+. +...+|.
T Consensus 375 ~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~-~~~~lt~ 453 (489)
T CHL00195 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY-EKREFTT 453 (489)
T ss_pred HHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH-cCCCcCH
Confidence 36665 9999999999999999999999999863 2678999999999999 1332 3456888
Q ss_pred HHHHHHHHHHHH-------hhHHHHHHHhhcC
Q 037509 64 SLSYVIVDYKVS-------KHQQRRKLAAIGG 88 (108)
Q Consensus 64 ~~~~~~v~~~v~-------eh~qk~~~~~~~~ 88 (108)
+.+...++..+. +-.+=++|+....
T Consensus 454 ~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~~ 485 (489)
T CHL00195 454 DDILLALKQFIPLAQTEKEQIEALQNWASSGR 485 (489)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHHHHHcCC
Confidence 888887765443 1123356887544
No 9
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.63 E-value=3.7e-08 Score=80.82 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=62.0
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.|+++ |||..|+||+|+.++|.+|++.+++++.. +.++..+|..|+||| .|.......+|.+.
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d 364 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMED 364 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 46665 99999999999999999999999998754 679999999999999 24444566889999
Q ss_pred HHHHHHHHHHhh
Q 037509 66 SYVIVDYKVSKH 77 (108)
Q Consensus 66 ~~~~v~~~v~eh 77 (108)
|.+.++.....+
T Consensus 365 ~~~A~~~~~~~~ 376 (389)
T PRK03992 365 FLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHHHhccc
Confidence 998888665443
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.2e-08 Score=83.28 Aligned_cols=49 Identities=27% Similarity=0.301 Sum_probs=46.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
+|.+|||+++|++|||+.++|..||++.+..... +.+++.||+++||||
T Consensus 367 EAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 367 EALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYS 417 (491)
T ss_pred HHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCC
Confidence 6999999999999999999999999999998765 789999999999999
No 11
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.3e-08 Score=80.19 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=57.6
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----eEEecCCc---------ccCHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----AGYESENC---------VIHPSLSYVIVD 71 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----aay~s~d~---------vLt~~~~~~~v~ 71 (108)
+|+|+.|+||+|+++.|.+|++++.+|+.. |++++++|+.|++|. .|.|.+.| .++.+.|.+.+.
T Consensus 331 GRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~ 410 (424)
T KOG0652|consen 331 GRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGIL 410 (424)
T ss_pred ccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHHHHHHH
Confidence 599999999999999999999999999865 889999999999999 35555543 567777777666
Q ss_pred HHHHh
Q 037509 72 YKVSK 76 (108)
Q Consensus 72 ~~v~e 76 (108)
...+.
T Consensus 411 eVqak 415 (424)
T KOG0652|consen 411 EVQAK 415 (424)
T ss_pred HHHHh
Confidence 55443
No 12
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.49 E-value=2.1e-07 Score=78.44 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=59.4
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.|++| |||+.|+||+|+.++|.+|++.|++++.. +.+++++|..|+||| .|.......+|.+.
T Consensus 337 paLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D 416 (438)
T PTZ00361 337 PALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQAD 416 (438)
T ss_pred HHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHH
Confidence 46664 99999999999999999999999998754 678999999999999 13333456788888
Q ss_pred HHHHHHHHHH
Q 037509 66 SYVIVDYKVS 75 (108)
Q Consensus 66 ~~~~v~~~v~ 75 (108)
+...++..+.
T Consensus 417 ~~~A~~~v~~ 426 (438)
T PTZ00361 417 FRKAKEKVLY 426 (438)
T ss_pred HHHHHHHHHh
Confidence 8887776544
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.5e-07 Score=77.13 Aligned_cols=74 Identities=23% Similarity=0.252 Sum_probs=62.3
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----eEEecCCc---------ccCHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----AGYESENC---------VIHPSLSYVIVD 71 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----aay~s~d~---------vLt~~~~~~~v~ 71 (108)
+|+|+.|+||-|++++|..||+++.+++.+ +.++..+|+++.|-| .+.|.+.| .+|.+.|+..|.
T Consensus 307 gridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 307 GRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 386 (404)
T ss_pred CcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHH
Confidence 499999999999999999999999999876 899999999999999 24455543 678888888888
Q ss_pred HHHHhhHHH
Q 037509 72 YKVSKHQQR 80 (108)
Q Consensus 72 ~~v~eh~qk 80 (108)
..++....|
T Consensus 387 kvm~k~~e~ 395 (404)
T KOG0728|consen 387 KVMQKDSEK 395 (404)
T ss_pred HHHhccccc
Confidence 777655444
No 14
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.48 E-value=1.8e-07 Score=81.90 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=45.1
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++| |||+.++||+|+.++|.+|++.++++... +.+++.+|+.|+|||
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 57776 99999999999999999999999998754 678999999999999
No 15
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.47 E-value=2.2e-07 Score=74.94 Aligned_cols=70 Identities=24% Similarity=0.201 Sum_probs=57.8
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.|+.+ |||+.++||+|+.++|.+|++.++.+... +.+++.+|+.|+||| .|+.++...+|.+.
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d 355 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMDD 355 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 35554 99999999999999999999999987654 578999999999999 24455566888888
Q ss_pred HHHHHHH
Q 037509 66 SYVIVDY 72 (108)
Q Consensus 66 ~~~~v~~ 72 (108)
+.+.++.
T Consensus 356 ~~~a~~~ 362 (364)
T TIGR01242 356 FIKAVEK 362 (364)
T ss_pred HHHHHHH
Confidence 8887764
No 16
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.41 E-value=5.1e-07 Score=75.78 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=59.1
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|+.+ |||+.++|++|+.++|.+|++.++++... +.++..+|..|+||| | |.......+|.+.
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~ 287 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMND 287 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 46665 99999999999999999999999987643 678999999999999 2 2223456799999
Q ss_pred HHHHHHHHH
Q 037509 66 SYVIVDYKV 74 (108)
Q Consensus 66 ~~~~v~~~v 74 (108)
+.+.++..+
T Consensus 288 l~~a~~~~~ 296 (495)
T TIGR01241 288 IEEAIDRVI 296 (495)
T ss_pred HHHHHHHHh
Confidence 999887654
No 17
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.36 E-value=6.2e-07 Score=78.17 Aligned_cols=70 Identities=17% Similarity=0.040 Sum_probs=57.8
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|++| |||+.++|++|+.++|.+|++.|+++... +.++..+|+.|.||| | |..++...+|.+.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d 384 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 384 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHH
Confidence 36665 99999999999999999999999998754 778999999999999 1 3344556888888
Q ss_pred HHHHHHH
Q 037509 66 SYVIVDY 72 (108)
Q Consensus 66 ~~~~v~~ 72 (108)
+++..+.
T Consensus 385 ~~~a~~~ 391 (644)
T PRK10733 385 FEKAKDK 391 (644)
T ss_pred HHHHHHH
Confidence 8877653
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=9.7e-07 Score=73.54 Aligned_cols=49 Identities=33% Similarity=0.362 Sum_probs=44.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch----hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA----DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~----d~~l~elA~~TEGfS 51 (108)
.|++| |||++++||+||.++|.+|++.++++... +.+++++|+.|+|||
T Consensus 393 ~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYS 447 (494)
T ss_pred HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCC
Confidence 57888 99999999999999999999999995422 789999999999988
No 19
>CHL00176 ftsH cell division protein; Validated
Probab=98.19 E-value=3.1e-06 Score=74.24 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=57.8
Q ss_pred hhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------eE---EecCCcccCHHHH
Q 037509 4 QLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------AG---YESENCVIHPSLS 66 (108)
Q Consensus 4 AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------aa---y~s~d~vLt~~~~ 66 (108)
|+++ |||+.++|++|+.++|.+||+.++++... +.++..+|.+|.||| || .-.....+|.+.+
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 5554 99999999999999999999999987533 778999999999999 22 2233457999999
Q ss_pred HHHHHHHH
Q 037509 67 YVIVDYKV 74 (108)
Q Consensus 67 ~~~v~~~v 74 (108)
++.++..+
T Consensus 417 ~~Ai~rv~ 424 (638)
T CHL00176 417 DTAIDRVI 424 (638)
T ss_pred HHHHHHHH
Confidence 99887653
No 20
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.2e-06 Score=72.56 Aligned_cols=49 Identities=29% Similarity=0.208 Sum_probs=45.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS 51 (108)
.|+.|||-.++++|||+.+.|..|++.+++++.. +.+++.+|+.|+|||
T Consensus 305 ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 305 EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcc
Confidence 5899999999999999999999999999998833 789999999999999
No 21
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.6e-06 Score=76.31 Aligned_cols=45 Identities=29% Similarity=0.292 Sum_probs=42.9
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
+|||+.|.+|+||...|.+||+.|++|.+. ++|+.-||+=|.|||
T Consensus 460 GRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFs 506 (752)
T KOG0734|consen 460 GRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFS 506 (752)
T ss_pred CccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCc
Confidence 599999999999999999999999999866 789999999999999
No 22
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.2e-05 Score=70.03 Aligned_cols=48 Identities=29% Similarity=0.288 Sum_probs=43.1
Q ss_pred hhhh--ccceEEecCCCCHHHHHHHHHHHHh--hhch--hhhHHHHHHHcc--Ccc
Q 037509 4 QLSH--HNVELLEFPLPGKEECFKLLKLYLD--KYTA--DDTLMEAAAKIE--GIS 51 (108)
Q Consensus 4 AV~~--RfDe~Ief~LPd~eeR~~ILklyl~--k~~~--d~~l~elA~~TE--GfS 51 (108)
|++| |||..++++||+.++|..|||...+ +.++ |+++++||+.|+ |||
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gft 718 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFT 718 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCc
Confidence 5554 9999999999999999999999999 4444 899999999998 999
No 23
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.2e-05 Score=72.34 Aligned_cols=71 Identities=17% Similarity=0.080 Sum_probs=58.1
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc-------------eEEecCCcccCHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS-------------AGYESENCVIHPSLSYVIV 70 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~~~~~v 70 (108)
+|||+.|.+++|+..+|.+|++.|+++... +.++..+|.+|.||| -|.+.+.-.|+...+..++
T Consensus 471 GRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 471 GRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred CccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 499999999999999999999999997654 678888999999999 1444445678888888888
Q ss_pred HHHHHhh
Q 037509 71 DYKVSKH 77 (108)
Q Consensus 71 ~~~v~eh 77 (108)
+..+.-+
T Consensus 551 ~Rvi~G~ 557 (774)
T KOG0731|consen 551 ERVIAGM 557 (774)
T ss_pred HHHhccc
Confidence 8554443
No 24
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3e-05 Score=70.15 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=42.1
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcce
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGISA 52 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfSa 52 (108)
+|+|+.++.|+|++.||.+||+...++... ++|++-+|.+|+|||.
T Consensus 824 GRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 824 GRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTG 871 (952)
T ss_pred CccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCch
Confidence 499999999999999999999999886644 7899999999999993
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=4.4e-05 Score=67.03 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=44.1
Q ss_pred hhhh--hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLS--HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~--~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++ +|||+.|.+++||...|++|++.++++..+ ++++..+|+.|.|||
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcc
Confidence 4554 499999999999999999999999997755 789999999999999
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.60 E-value=7e-05 Score=73.00 Aligned_cols=75 Identities=5% Similarity=-0.131 Sum_probs=56.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHH--Hhhhch---hhhHHHHHHHccCcc----e---------EEecCCcccC
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLY--LDKYTA---DDTLMEAAAKIEGIS----A---------GYESENCVIH 62 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILkly--l~k~~~---d~~l~elA~~TEGfS----a---------ay~s~d~vLt 62 (108)
.|++| |||+.|++++|+..+|++++... .++... ..+++++|+.|.||| + |.-.+..+++
T Consensus 1787 PALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id 1866 (2281)
T CHL00206 1787 PALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIID 1866 (2281)
T ss_pred HhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccC
Confidence 46776 99999999999999999998854 334333 257899999999999 1 2333356788
Q ss_pred HHHHHHHHHHHHHhh
Q 037509 63 PSLSYVIVDYKVSKH 77 (108)
Q Consensus 63 ~~~~~~~v~~~v~eh 77 (108)
.+.++.++...+...
T Consensus 1867 ~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1867 TNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHHHHHHHHhhh
Confidence 888888887665443
No 27
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=3e-05 Score=64.79 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=63.3
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----eEEecCCcccCHHHHHH-HHHHHHHhhHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----AGYESENCVIHPSLSYV-IVDYKVSKHQQ 79 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----aay~s~d~vLt~~~~~~-~v~~~v~eh~q 79 (108)
+|+|+.|+||+||+..+++|+.++..++.+ +++++++...-+.+| -|.|+|.|.|--.--+. +...-.++.+.
T Consensus 345 GrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 345 GRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKE 424 (440)
T ss_pred CccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHH
Confidence 599999999999999999999999999866 889999999999999 47888877553322222 22223344455
Q ss_pred HHHHHhhcCCCcc
Q 037509 80 RRKLAAIGGGSER 92 (108)
Q Consensus 80 k~~~~~~~~~~~~ 92 (108)
|.-+.+.++..+.
T Consensus 425 ~V~~~K~~g~~eg 437 (440)
T KOG0726|consen 425 KVLYKKKEGVPEG 437 (440)
T ss_pred HHHHhcccCCccc
Confidence 5666665554443
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=4.1e-05 Score=67.61 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=44.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch------hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~------d~~l~elA~~TEGfS 51 (108)
+|++| ||+-.+|+.|||++.|.+||+++.+++.. |+|+++||.+|.+||
T Consensus 384 EALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 384 EALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS 440 (744)
T ss_pred HHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc
Confidence 45654 99999999999999999999999998743 899999999999999
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.32 E-value=0.00086 Score=57.97 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=29.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.|++| |||..|+|++|+.++|..|++.|+.+.
T Consensus 348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 348 PAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred HhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc
Confidence 48888 999999999999999999999999853
No 30
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=7.3e-05 Score=61.67 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=59.7
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----eEEecC---------CcccCHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----AGYESE---------NCVIHPSLSYVIVD 71 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----aay~s~---------d~vLt~~~~~~~v~ 71 (108)
+|+|+.|+|||||..+++-++.....|+.+ ++|++.+..+-+..| +|.|++ .+++....|++...
T Consensus 315 grldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 315 GRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred ccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHH
Confidence 599999999999999999999999999866 789999999999999 455555 45777888888887
Q ss_pred HHHHhh
Q 037509 72 YKVSKH 77 (108)
Q Consensus 72 ~~v~eh 77 (108)
..|+..
T Consensus 395 ~~vk~~ 400 (408)
T KOG0727|consen 395 TVVKKD 400 (408)
T ss_pred hhcCCc
Confidence 777644
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.29 E-value=0.00034 Score=61.56 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=43.1
Q ss_pred hhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 4 QLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 4 AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
|+.+ |||+.++|++|+.++|.+|++.+.+++.. +.+++.+|+.|+||+
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 4554 99999999999999999999999987754 778999999999999
No 32
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=7.2e-05 Score=62.08 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=58.1
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcce-------------EEecCCcccCHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGISA-------------GYESENCVIHPSLSYVIVD 71 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfSa-------------ay~s~d~vLt~~~~~~~v~ 71 (108)
+|+|+.++|.|||.|.|..|++++.+.+.. |.-++-+|+++.+-+. |.....-+.|+..|-+.|+
T Consensus 337 grldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atekdfl~av~ 416 (435)
T KOG0729|consen 337 GRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVN 416 (435)
T ss_pred cccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHH
Confidence 599999999999999999999999998865 6677889999888771 3334456789999999888
Q ss_pred HHHHhh
Q 037509 72 YKVSKH 77 (108)
Q Consensus 72 ~~v~eh 77 (108)
..|+-.
T Consensus 417 kvvkgy 422 (435)
T KOG0729|consen 417 KVVKGY 422 (435)
T ss_pred HHHHHH
Confidence 777643
No 33
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0012 Score=59.17 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=42.3
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
+|||+-|....|+..+|++||+...+++.+ +.++..||++|-||-
T Consensus 350 GRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFV 396 (802)
T ss_pred ccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCcc
Confidence 499999999999999999999999998755 889999999999998
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0022 Score=57.30 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.6
Q ss_pred hhhhh-ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH-HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~-RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|..| |||+.+++..|+..+|..|++.+++++.. +.++..+|..|-||.
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYV 386 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchh
Confidence 45554 99999999999999999999999999865 589999999999998
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0016 Score=60.70 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=41.8
Q ss_pred hhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc
Q 037509 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS 51 (108)
Q Consensus 6 ~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS 51 (108)
-+|||+.++||||+.+.|.+|+.++..+... ...+..+|+.|.||-
T Consensus 426 Pgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 426 PGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred CcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 4699999999999999999999999988633 778999999999999
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.44 E-value=0.0041 Score=52.84 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=38.3
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch-hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA-DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~-d~~l~elA~~TEGfS 51 (108)
.|++| |||+.+ ++|+.++|..||+.++++... ..++..|+..+.|=+
T Consensus 283 pALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 283 APLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQP 332 (413)
T ss_pred HhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCC
Confidence 46777 999964 699999999999999998643 678888888887743
No 37
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.011 Score=54.32 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=59.5
Q ss_pred hhhccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------------------------
Q 037509 5 LSHHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS------------------------------- 51 (108)
Q Consensus 5 V~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS------------------------------- 51 (108)
|.+-|-..|.+|-|++++|.+||+-|+..... ++.+..+|++|.|||
T Consensus 550 i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~ 629 (953)
T KOG0736|consen 550 IQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEE 629 (953)
T ss_pred HHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhc
Confidence 45566778999999999999999999987655 788999999999999
Q ss_pred --eEEecCCcccCHHHHHHHHHHHHHhhHH
Q 037509 52 --AGYESENCVIHPSLSYVIVDYKVSKHQQ 79 (108)
Q Consensus 52 --aay~s~d~vLt~~~~~~~v~~~v~eh~q 79 (108)
.+.++..-.+|++.|...+...-+++.+
T Consensus 630 ~~~~~~~~~~~l~~edf~kals~~~~~fs~ 659 (953)
T KOG0736|consen 630 DEGELCAAGFLLTEEDFDKALSRLQKEFSD 659 (953)
T ss_pred cccccccccceecHHHHHHHHHHHHHhhhh
Confidence 1122223578888888888877777764
No 38
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.019 Score=52.60 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=58.6
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc-------------eEE----ecCCcccCHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS-------------AGY----ESENCVIHPSLS 66 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS-------------aay----~s~d~vLt~~~~ 66 (108)
++|+.++..|-|+..+|.+||+-.+++-. ...+++-+|.+||||+ .|| +....+||.++|
T Consensus 562 ~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f 641 (952)
T KOG0735|consen 562 LLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELF 641 (952)
T ss_pred cceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHH
Confidence 48999999999999999999999998754 2566777999999999 455 111229999999
Q ss_pred HHHHHHHHHhhHHHH
Q 037509 67 YVIVDYKVSKHQQRR 81 (108)
Q Consensus 67 ~~~v~~~v~eh~qk~ 81 (108)
.+.+...+.-.-++.
T Consensus 642 ~ksL~~F~P~aLR~i 656 (952)
T KOG0735|consen 642 EKSLKDFVPLALRGI 656 (952)
T ss_pred HHHHHhcChHHhhhc
Confidence 998887765443333
No 39
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.44 E-value=0.15 Score=39.50 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=54.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEe--cCCcccCHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYE--SENCVIHPSLSY 67 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~--s~d~vLt~~~~~ 67 (108)
.++++||...+.|+.|+.++..++++........ +..++.+|+.+.|.- ..++ .+...+|.+++.
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL 223 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 4688999999999999999999999988875422 667899999999976 1122 334568888888
Q ss_pred HHHHH
Q 037509 68 VIVDY 72 (108)
Q Consensus 68 ~~v~~ 72 (108)
..+..
T Consensus 224 ~~l~~ 228 (305)
T TIGR00635 224 KALEM 228 (305)
T ss_pred HHHHH
Confidence 87765
No 40
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.40 E-value=0.14 Score=40.81 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=54.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc------------eEEecCCcccCHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS------------AGYESENCVIHPSLSY 67 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS------------aay~s~d~vLt~~~~~ 67 (108)
.++++||...++|+.|+.+++.+||+........ +..++.||+.+.|.- .+...+.+.+|.+++.
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~ 244 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIAD 244 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 4578899999999999999999999998886522 667899999999976 1222234678888877
Q ss_pred HHHHH
Q 037509 68 VIVDY 72 (108)
Q Consensus 68 ~~v~~ 72 (108)
..++.
T Consensus 245 ~~l~~ 249 (328)
T PRK00080 245 KALDM 249 (328)
T ss_pred HHHHH
Confidence 77653
No 41
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.14 E-value=0.12 Score=44.46 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=50.2
Q ss_pred hhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc-----e----EEecCCcccCHHHHHHHHHHH
Q 037509 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS-----A----GYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 6 ~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS-----a----ay~s~d~vLt~~~~~~~v~~~ 73 (108)
+.+.=-+++||||+.+|...+++.+..... .+..++.+|+.+.|+| . ++ ..+|.++.+.+..+.+.|
T Consensus 130 l~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~k 208 (489)
T CHL00195 130 LKDLITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII-ATYKTIDENSIPLILEEK 208 (489)
T ss_pred HHhceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCCChhhHHHHHHHH
Confidence 344445789999999999999988876431 2778999999999999 1 22 235678888777666554
Q ss_pred H
Q 037509 74 V 74 (108)
Q Consensus 74 v 74 (108)
-
T Consensus 209 ~ 209 (489)
T CHL00195 209 K 209 (489)
T ss_pred H
Confidence 3
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.67 E-value=0.43 Score=36.73 Aligned_cols=72 Identities=8% Similarity=0.095 Sum_probs=47.7
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc--eEEecCCcccCHHHHHHHHHHHHHhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS--AGYESENCVIHPSLSYVIVDYKVSKH 77 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS--aay~s~d~vLt~~~~~~~v~~~v~eh 77 (108)
.++.+||+..++||-|+.+++..|++.+++.... +..+..++....++. +.. +--+.-.+...++..+..+
T Consensus 163 p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~----~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 163 PGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR----EFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred hHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC----CCchHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999986522 444566665554443 111 1123345556666655544
Q ss_pred H
Q 037509 78 Q 78 (108)
Q Consensus 78 ~ 78 (108)
.
T Consensus 239 ~ 239 (261)
T TIGR02881 239 A 239 (261)
T ss_pred H
Confidence 3
No 43
>CHL00181 cbbX CbbX; Provisional
Probab=93.08 E-value=0.81 Score=36.41 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=49.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc--h-hhhHHHHHHHcc--CcceEEecCCcccCHHHHHHHHHHHHHhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT--A-DDTLMEAAAKIE--GISAGYESENCVIHPSLSYVIVDYKVSKH 77 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~--~-d~~l~elA~~TE--GfSaay~s~d~vLt~~~~~~~v~~~v~eh 77 (108)
.++.+||+..|+|+-|+.+++.+|++.++++.. . +.....++.... +.+.-|| +...++.+++..+.++
T Consensus 181 p~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~G------NaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 181 PGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFA------NARSVRNALDRARMRQ 254 (287)
T ss_pred HHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCc------cHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998642 2 222222222111 1111121 3567777888777766
Q ss_pred HHHHHH
Q 037509 78 QQRRKL 83 (108)
Q Consensus 78 ~qk~~~ 83 (108)
..+..=
T Consensus 255 ~~r~~~ 260 (287)
T CHL00181 255 ANRIFE 260 (287)
T ss_pred HHHHHc
Confidence 666543
No 44
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.85 E-value=0.14 Score=41.84 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=53.3
Q ss_pred hhhhhccce--EEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecC-CcccCHHHH
Q 037509 3 IQLSHHNVE--LLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESE-NCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfDe--~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~-d~vLt~~~~ 66 (108)
..+..||.. .++|+.|+.++|..||+..++..-. +..++.||+.+.|=- .+|+.. ...+|.+++
T Consensus 251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~ 330 (405)
T TIGR00362 251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELA 330 (405)
T ss_pred hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 457788975 7999999999999999999986422 677888888877633 244432 235788888
Q ss_pred HHHHHHHHH
Q 037509 67 YVIVDYKVS 75 (108)
Q Consensus 67 ~~~v~~~v~ 75 (108)
.+++...+.
T Consensus 331 ~~~L~~~~~ 339 (405)
T TIGR00362 331 KEALKDLLR 339 (405)
T ss_pred HHHHHHhcc
Confidence 777776544
No 45
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.065 Score=45.15 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=40.0
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhc--hhhhHHHHHHHccCcc
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYT--ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~--~d~~l~elA~~TEGfS 51 (108)
+|+|+-+++|||++..|..|++.+-.... .+.+.+++.+.++||.
T Consensus 292 GRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~ 338 (388)
T KOG0651|consen 292 GRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFN 338 (388)
T ss_pred ccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccC
Confidence 59999999999999999999988877542 2678999999999999
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.56 E-value=0.32 Score=43.22 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=52.2
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc-------hhhhHHHHHHHccCcc----------------eEE-----
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT-------ADDTLMEAAAKIEGIS----------------AGY----- 54 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~-------~d~~l~elA~~TEGfS----------------aay----- 54 (108)
.|+.+||. .|+|+.|+.+++.+||+....+|. .+..+..++..+..|= +|.
T Consensus 331 ~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~ 409 (731)
T TIGR02639 331 RALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRP 409 (731)
T ss_pred HHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCc
Confidence 48899997 799999999999999998776542 1778888888888774 111
Q ss_pred -ecCCcccCHHHHHHHHHHH
Q 037509 55 -ESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 55 -~s~d~vLt~~~~~~~v~~~ 73 (108)
..+...+|.+.+..++...
T Consensus 410 ~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 410 KAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred ccccccccCHHHHHHHHHHH
Confidence 1123458888888877765
No 47
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.11 E-value=0.79 Score=34.50 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhh-------chhhhHHHHHHHccCcc------------eEEecCCcccCHH
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKY-------TADDTLMEAAAKIEGIS------------AGYESENCVIHPS 64 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~-------~~d~~l~elA~~TEGfS------------aay~s~d~vLt~~ 64 (108)
.+.+|+...++++..+.++-..++...+... ..+..++.|++.|.|.. .||.++...+|.+
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~ 257 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGE 257 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 4667888899999999999999998888632 22678999999999987 4677788899999
Q ss_pred HHHHHHHH
Q 037509 65 LSYVIVDY 72 (108)
Q Consensus 65 ~~~~~v~~ 72 (108)
.++.++.+
T Consensus 258 ~v~~~~~~ 265 (269)
T TIGR03015 258 EVREVIAE 265 (269)
T ss_pred HHHHHHHH
Confidence 99998875
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.00 E-value=0.42 Score=43.30 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.|||+ .|+++.|+.+++.+||+.+..+|.. +..+..++..++-|-
T Consensus 335 ~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 335 RALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred HHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 57899996 7999999999999999998877633 556666777776655
No 49
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.86 E-value=0.46 Score=43.40 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=40.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc-------hhhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT-------ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~-------~d~~l~elA~~TEGfS 51 (108)
.|+++||. .|+++.|+.+++.+||+-+-+.|. .+..+..++..+++|-
T Consensus 336 ~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 336 PALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 58999995 899999999999999766665542 1888999999999988
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.64 E-value=1.8 Score=34.25 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcceEEecCCcccCHHHHHHHHHHHHHhhHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGISAGYESENCVIHPSLSYVIVDYKVSKHQQ 79 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfSaay~s~d~vLt~~~~~~~v~~~v~eh~q 79 (108)
.++.+||+..|+||.|+.+++..|++.++++... +..++.++....-. +..+..=+..-++.+++..+.++..
T Consensus 180 p~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~----~~~~~~GN~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 180 PGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALR----RTQPHFANARSIRNAIDRARLRQAN 255 (284)
T ss_pred HHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHh----CCCCCCChHHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999997522 22333333322110 1112222345667777777776666
Q ss_pred HHH
Q 037509 80 RRK 82 (108)
Q Consensus 80 k~~ 82 (108)
+..
T Consensus 256 r~~ 258 (284)
T TIGR02880 256 RLF 258 (284)
T ss_pred HHh
Confidence 543
No 51
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.60 E-value=1.3 Score=34.71 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=50.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+.++..|+ ..++|+.|+.++...+++.++++.- .+..+..++..+.|-- +.|+. +.+|.+.+.+
T Consensus 161 ~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~--~~it~~~v~~ 237 (355)
T TIGR02397 161 PATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN--GNITYEDVNE 237 (355)
T ss_pred HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 45677888 5789999999999999999998652 2567888898888733 46654 5588887766
Q ss_pred HHH
Q 037509 69 IVD 71 (108)
Q Consensus 69 ~v~ 71 (108)
++.
T Consensus 238 ~~~ 240 (355)
T TIGR02397 238 LLG 240 (355)
T ss_pred HhC
Confidence 553
No 52
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.55 E-value=0.48 Score=39.47 Aligned_cols=73 Identities=18% Similarity=0.102 Sum_probs=54.7
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc----------eEEecC-CcccCHHHH
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS----------AGYESE-NCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS----------aay~s~-d~vLt~~~~ 66 (108)
.++..||. .+++|..|+.++|.+||+..++.. +.+..++.||..+.|=- .+|+.. ...+|.+++
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~ 342 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELA 342 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 45678996 489999999999999999999853 22677888888877643 244432 346899998
Q ss_pred HHHHHHHHH
Q 037509 67 YVIVDYKVS 75 (108)
Q Consensus 67 ~~~v~~~v~ 75 (108)
.+++.+.+.
T Consensus 343 ~~~l~~~~~ 351 (450)
T PRK00149 343 KEALKDLLA 351 (450)
T ss_pred HHHHHHhhc
Confidence 888887654
No 53
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.47 E-value=0.93 Score=41.17 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=40.8
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+||. .|.++.|+.+++.+||+.+..+|.. +..+..++..+.+|-
T Consensus 322 ~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 322 AALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred HHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 47899996 5899999999999999998877643 678888888888887
No 54
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.58 E-value=2.1 Score=39.93 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=37.2
Q ss_pred hccceEEecCCCCH-HHHHHHHHHHHhhhch--hhhHHHHHHHcc
Q 037509 7 HHNVELLEFPLPGK-EECFKLLKLYLDKYTA--DDTLMEAAAKIE 48 (108)
Q Consensus 7 ~RfDe~Ief~LPd~-eeR~~ILklyl~k~~~--d~~l~elA~~TE 48 (108)
+|||+.+|++.|+. +.+.++|+-..+|+.+ ++++.+||+++.
T Consensus 832 GRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 832 GRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP 876 (953)
T ss_pred CccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC
Confidence 59999999999865 7789999999999876 789999999874
No 55
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=2.2 Score=36.41 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=53.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch--------------------hhhHHHHHHH-ccCcc----------
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA--------------------DDTLMEAAAK-IEGIS---------- 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--------------------d~~l~elA~~-TEGfS---------- 51 (108)
-|.-||=|=+.+++-|+.+.|..|++..+..... +...+.+++. |.|.|
T Consensus 312 ~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~L 391 (423)
T KOG0744|consen 312 VAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLL 391 (423)
T ss_pred HHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHH
Confidence 3778999999999999999999999998876532 3334455544 49999
Q ss_pred --eEEecCCcccCHHHHHHHHHHHHHhhH
Q 037509 52 --AGYESENCVIHPSLSYVIVDYKVSKHQ 78 (108)
Q Consensus 52 --aay~s~d~vLt~~~~~~~v~~~v~eh~ 78 (108)
|.|.+. ..+|.+-|-...-..++++.
T Consensus 392 aha~y~~~-~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 392 AHAEYFRT-FTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred HHHhccCC-CccChHHHHHHHHHHHHHHh
Confidence 677765 45566555555555555543
No 56
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.74 E-value=1.8 Score=39.58 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=39.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+||+ .|.++.|+.+++.+||+....+|.. +..+...+..+.+|-
T Consensus 327 ~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 327 AALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred HHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 48899998 5889999999999999988776522 667777778888887
No 57
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=84.12 E-value=1.7 Score=36.47 Aligned_cols=46 Identities=20% Similarity=0.132 Sum_probs=41.6
Q ss_pred hhccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 6 ~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
..|||+.+++++|+...|.++++.....+.. +.++..+|..|.||+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~ 185 (494)
T COG0464 138 PGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKS 185 (494)
T ss_pred ccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCcc
Confidence 3589999999999999999999999987654 579999999999999
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.29 E-value=4.7 Score=31.22 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=47.7
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc-------eEEecCCcccCHHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS-------AGYESENCVIHPSLSYVIVD 71 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS-------aay~s~d~vLt~~~~~~~v~ 71 (108)
.++..|. ..++|+.|+.++...+++..+++.- .+..++.+++.+.|=- ..++.+.+.+|.+.+++++.
T Consensus 170 ~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 170 PPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAAYEALG 247 (337)
T ss_pred hhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhC
Confidence 3556676 5789999999999999999887642 2677888888885522 12223445788887776554
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.27 E-value=8.8 Score=30.27 Aligned_cols=70 Identities=17% Similarity=0.058 Sum_probs=47.9
Q ss_pred hhhhccc-eEEecCCCCHHHHHHHHHHHHhhh----ch-hh---hHHHHHHHccCcc---------e---EEecCCcccC
Q 037509 4 QLSHHNV-ELLEFPLPGKEECFKLLKLYLDKY----TA-DD---TLMEAAAKIEGIS---------A---GYESENCVIH 62 (108)
Q Consensus 4 AV~~RfD-e~Ief~LPd~eeR~~ILklyl~k~----~~-d~---~l~elA~~TEGfS---------a---ay~s~d~vLt 62 (108)
.+.+||. ..++|+.++.++...|++..++.- .. +. .+.+++..+.|.. | |...+...+|
T Consensus 184 ~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it 263 (365)
T TIGR02928 184 RVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVT 263 (365)
T ss_pred HHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4566774 789999999999999999998631 11 32 3445556666776 1 3333446799
Q ss_pred HHHHHHHHHHH
Q 037509 63 PSLSYVIVDYK 73 (108)
Q Consensus 63 ~~~~~~~v~~~ 73 (108)
.+.+..+++..
T Consensus 264 ~~~v~~a~~~~ 274 (365)
T TIGR02928 264 EDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHH
Confidence 99888776544
No 60
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=81.07 E-value=2.5 Score=35.56 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=50.2
Q ss_pred hhhhccc--eEEecCCCCHHHHHHHHHHHHhhh--ch-hhhHHHHHHHccCcc----------eEEecC-CcccCHHHHH
Q 037509 4 QLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY--TA-DDTLMEAAAKIEGIS----------AGYESE-NCVIHPSLSY 67 (108)
Q Consensus 4 AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~--~~-d~~l~elA~~TEGfS----------aay~s~-d~vLt~~~~~ 67 (108)
.+..||. -++.++.||.+.|..||+..++.. .. +..++.||+...|-- .+|+.- ...+|.++..
T Consensus 247 rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~ 326 (440)
T PRK14088 247 RLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAI 326 (440)
T ss_pred HHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4556773 578899999999999999998753 22 667888888887732 233332 3457888877
Q ss_pred HHHHHHHH
Q 037509 68 VIVDYKVS 75 (108)
Q Consensus 68 ~~v~~~v~ 75 (108)
+++.+.+.
T Consensus 327 ~~L~~~~~ 334 (440)
T PRK14088 327 LLLKDFIK 334 (440)
T ss_pred HHHHHHhc
Confidence 77776543
No 61
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=80.56 E-value=4.4 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=26.2
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
..++.+|+. .+.|+.|+.+++..+++.+++..
T Consensus 145 ~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~ 176 (316)
T PHA02544 145 IEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRC 176 (316)
T ss_pred hHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 467889995 78999999999999888766543
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=79.98 E-value=5.6 Score=34.55 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=50.8
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEec-CCcccCHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYES-ENCVIHPSLSY 67 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s-~d~vLt~~~~~ 67 (108)
..+|..|. .+++|..|+.++...+++..+++.-. +..+..|+..++|-- ++|+. +++.+|.+.++
T Consensus 172 ~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~ 250 (507)
T PRK06645 172 PATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVIN 250 (507)
T ss_pred hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHH
Confidence 34677788 68999999999999999999986422 567889999999843 46665 34567777666
Q ss_pred HHH
Q 037509 68 VIV 70 (108)
Q Consensus 68 ~~v 70 (108)
+++
T Consensus 251 ~ll 253 (507)
T PRK06645 251 QML 253 (507)
T ss_pred HHH
Confidence 553
No 63
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.90 E-value=7.4 Score=31.20 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=48.9
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccC-cc---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEG-IS---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEG-fS---------aay~s~d~vLt~~~~~~ 68 (108)
+.++.+|. ..++|+.|+.++...++...+++.- .+..++.++..+.| .. +.|+.+. +|.+.++.
T Consensus 152 ~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~--it~~~v~~ 228 (367)
T PRK14970 152 IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN--ITRQAVTE 228 (367)
T ss_pred CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHH
Confidence 35677787 5789999999999999988887642 26788889988887 22 4564433 78877776
Q ss_pred HHH
Q 037509 69 IVD 71 (108)
Q Consensus 69 ~v~ 71 (108)
++.
T Consensus 229 ~~~ 231 (367)
T PRK14970 229 NLN 231 (367)
T ss_pred HhC
Confidence 654
No 64
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=78.24 E-value=7.6 Score=34.96 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=26.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLD 32 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~ 32 (108)
.|+++||+ +|+|+-|+.+++..|++.|+.
T Consensus 478 ~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 478 RPLLDRME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred HHHhCCee-EEecCCCCHHHHHHHHHHHHH
Confidence 58899995 899999999999999999984
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.02 E-value=5.4 Score=30.56 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=48.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++..|.- .++|+.|+.++...+++.++++.-. +..++.++..+.|-- +.+ .+.+|.+.+..+
T Consensus 147 ~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~---~~~it~~~v~~~ 222 (319)
T PRK00440 147 DPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT---GKEVTEEAVYKI 222 (319)
T ss_pred hhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCCHHHHHHH
Confidence 45666765 5899999999999999999986522 678899999988754 233 356788776665
Q ss_pred HH
Q 037509 70 VD 71 (108)
Q Consensus 70 v~ 71 (108)
+.
T Consensus 223 ~~ 224 (319)
T PRK00440 223 TG 224 (319)
T ss_pred hC
Confidence 53
No 66
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.55 E-value=9.5 Score=31.49 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=52.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh------chhhhHHHHHHHccCcc--------eEEecCCcccCHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY------TADDTLMEAAAKIEGIS--------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~------~~d~~l~elA~~TEGfS--------aay~s~d~vLt~~~~~~ 68 (108)
.++.+|+ .++.|+.|+.++...+++..+.+. +.+..++.+++.+.|-. .+... ...+|.+.+.+
T Consensus 137 ~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~ 214 (413)
T PRK13342 137 PALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEE 214 (413)
T ss_pred HHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHH
Confidence 5788898 889999999999999999988652 22567788888887755 11111 56789999888
Q ss_pred HHHHHH
Q 037509 69 IVDYKV 74 (108)
Q Consensus 69 ~v~~~v 74 (108)
+++...
T Consensus 215 ~~~~~~ 220 (413)
T PRK13342 215 ALQKRA 220 (413)
T ss_pred HHhhhh
Confidence 887543
No 67
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.95 E-value=8.8 Score=31.21 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=50.7
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+.++..|. ..++|+.|+.++...+|+..+++.- .+..++.+|..+.|-- ++|+ .+.+|.+.+.+
T Consensus 163 ~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~--~~~It~~~v~~ 239 (363)
T PRK14961 163 PKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLG--KGNINIKNVTD 239 (363)
T ss_pred hHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence 35677787 6899999999999999998887642 2667888999998822 4564 57788887776
Q ss_pred HHH
Q 037509 69 IVD 71 (108)
Q Consensus 69 ~v~ 71 (108)
++.
T Consensus 240 ~l~ 242 (363)
T PRK14961 240 MLG 242 (363)
T ss_pred HHC
Confidence 543
No 68
>PRK09087 hypothetical protein; Validated
Probab=73.53 E-value=6.4 Score=30.11 Aligned_cols=71 Identities=8% Similarity=0.060 Sum_probs=49.7
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc----------eEEe-cCCcccCHHHH
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS----------AGYE-SENCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS----------aay~-s~d~vLt~~~~ 66 (108)
..+..|+. .++++.-|+.++|.++|+..++.. +.+..++-||+..+|=- ..++ +..-.+|-.++
T Consensus 136 ~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~ 215 (226)
T PRK09087 136 PDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALA 215 (226)
T ss_pred ccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34566776 789999999999999999999864 12667777777777543 1222 12345788888
Q ss_pred HHHHHHH
Q 037509 67 YVIVDYK 73 (108)
Q Consensus 67 ~~~v~~~ 73 (108)
.+++...
T Consensus 216 ~~~l~~~ 222 (226)
T PRK09087 216 AEVLNEM 222 (226)
T ss_pred HHHHHhh
Confidence 7777653
No 69
>PRK08727 hypothetical protein; Validated
Probab=73.51 E-value=7.7 Score=29.54 Aligned_cols=68 Identities=6% Similarity=-0.008 Sum_probs=45.6
Q ss_pred hhhhhcc--ceEEecCCCCHHHHHHHHHHHHhh--hch-hhhHHHHHHHccCcc------------eEEecCCcccCHHH
Q 037509 3 IQLSHHN--VELLEFPLPGKEECFKLLKLYLDK--YTA-DDTLMEAAAKIEGIS------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~Rf--De~Ief~LPd~eeR~~ILklyl~k--~~~-d~~l~elA~~TEGfS------------aay~s~d~vLt~~~ 65 (108)
.++..|| -..++|+-|+.++|.+||+....+ ... +..++.||+.++|=- .+.. ....+|..+
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~-~~~~it~~~ 223 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLA-AKRRVTVPF 223 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hCCCCCHHH
Confidence 4566776 457889999999999999987654 222 667788888877533 0111 134567777
Q ss_pred HHHHHH
Q 037509 66 SYVIVD 71 (108)
Q Consensus 66 ~~~~v~ 71 (108)
+.++++
T Consensus 224 ~~~~l~ 229 (233)
T PRK08727 224 LRRVLE 229 (233)
T ss_pred HHHHHh
Confidence 666654
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=73.15 E-value=8 Score=28.23 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred hhhhccc--eEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHH
Q 037509 4 QLSHHNV--ELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAK 46 (108)
Q Consensus 4 AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~ 46 (108)
.+.+|+. ..+++|-|+.+++..+++.+..+... +..++.|++.
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~ 190 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH 190 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 4556774 78999999999999999998875422 4445555553
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=71.19 E-value=7 Score=35.61 Aligned_cols=53 Identities=8% Similarity=0.110 Sum_probs=41.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch------------hhhHHHHHHHccCcceEEecC
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA------------DDTLMEAAAKIEGISAGYESE 57 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~------------d~~l~elA~~TEGfSaay~s~ 57 (108)
...++|+|++|.|+-.+.++-.+|+.+++.++.. +..++.||+ .||+..||-.
T Consensus 638 pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~--~~~~~~~GAR 702 (758)
T PRK11034 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAE--KGYDRAMGAR 702 (758)
T ss_pred HHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHH--hCCCCCCCCc
Confidence 3568999999999999999999999999875421 555666764 5888777653
No 72
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.80 E-value=13 Score=31.86 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=50.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCc-c---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGI-S---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGf-S---------aay~s~d~vLt~~~~~~ 68 (108)
+.++..|.- .++|+.|+.++....|+..+++.-. +..+..+|..++|- . ++|+ ++.+|.+.+..
T Consensus 163 ~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~--~~~It~~~V~~ 239 (486)
T PRK14953 163 PPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG--EGKVTIKVVEE 239 (486)
T ss_pred HHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCcCHHHHHH
Confidence 346777874 7999999999999999999886522 56788899999883 2 4675 56888888777
Q ss_pred HH
Q 037509 69 IV 70 (108)
Q Consensus 69 ~v 70 (108)
++
T Consensus 240 ~l 241 (486)
T PRK14953 240 FL 241 (486)
T ss_pred Hh
Confidence 53
No 73
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=70.40 E-value=13 Score=29.46 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=49.4
Q ss_pred eEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHHHHH
Q 037509 11 ELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 11 e~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v~~~ 73 (108)
..+.|..|+..+..+.++..+++.-. +..++.++..+.|=. +.|+.+++.+|.+.++.+|...
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~ 210 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDA 210 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCc
Confidence 35677789999999999999987632 678888999988833 6887777899999888876544
No 74
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=68.75 E-value=22 Score=28.44 Aligned_cols=69 Identities=16% Similarity=0.059 Sum_probs=48.8
Q ss_pred hhhcc-ceEEecCCCCHHHHHHHHHHHHhhh-----chhhhHHHHHHHccCcc------------e---EEecCCcccCH
Q 037509 5 LSHHN-VELLEFPLPGKEECFKLLKLYLDKY-----TADDTLMEAAAKIEGIS------------A---GYESENCVIHP 63 (108)
Q Consensus 5 V~~Rf-De~Ief~LPd~eeR~~ILklyl~k~-----~~d~~l~elA~~TEGfS------------a---ay~s~d~vLt~ 63 (108)
+..|+ ...++|+.++.++...|++..++.- ..+..++.+|+.+.|.+ | |...+...+|.
T Consensus 193 ~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~ 272 (394)
T PRK00411 193 VKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTE 272 (394)
T ss_pred HHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 34455 3678999999999999999988642 22667788888887644 1 22233457899
Q ss_pred HHHHHHHHHH
Q 037509 64 SLSYVIVDYK 73 (108)
Q Consensus 64 ~~~~~~v~~~ 73 (108)
+.+..+++..
T Consensus 273 ~~v~~a~~~~ 282 (394)
T PRK00411 273 EDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHH
Confidence 9888777654
No 75
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=68.71 E-value=13 Score=26.71 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=35.7
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHccCc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGI 50 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TEGf 50 (108)
+.++..|. ..++|+.|+.++..++|+.. . +.+..+..++..+.|-
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~~--g-i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIRQ--G-ISEEAAELLLALAGGS 184 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHHc--C-CCHHHHHHHHHHcCCC
Confidence 56788888 58999999999998888776 2 3366788888888874
No 76
>PRK05907 hypothetical protein; Provisional
Probab=65.55 E-value=10 Score=30.78 Aligned_cols=65 Identities=11% Similarity=-0.109 Sum_probs=50.4
Q ss_pred EecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc-----------eEEecCCcccCHHHHHHHHHHHHHhh
Q 037509 13 LEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS-----------AGYESENCVIHPSLSYVIVDYKVSKH 77 (108)
Q Consensus 13 Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS-----------aay~s~d~vLt~~~~~~~v~~~v~eh 77 (108)
++|+.|+..+=.+.+...+++.-. ...++.++.++.|.+ +.|+.+++.+|.+.++.+|.....++
T Consensus 129 ~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~n 207 (311)
T PRK05907 129 GEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAAS 207 (311)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCccccc
Confidence 478888888888888888876532 667888999995444 68988899999999999877655544
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=64.47 E-value=15 Score=27.86 Aligned_cols=46 Identities=11% Similarity=0.049 Sum_probs=34.8
Q ss_pred hhhhcc--ceEEecCCCCHHHHHHHHHHHHhhh--ch-hhhHHHHHHHccC
Q 037509 4 QLSHHN--VELLEFPLPGKEECFKLLKLYLDKY--TA-DDTLMEAAAKIEG 49 (108)
Q Consensus 4 AV~~Rf--De~Ief~LPd~eeR~~ILklyl~k~--~~-d~~l~elA~~TEG 49 (108)
.+..|+ ..+++++.|+.++|.+||+...... .. +..++-||+..+|
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 455555 5788999999999999999888643 22 6677778877775
No 78
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=64.03 E-value=16 Score=30.99 Aligned_cols=73 Identities=8% Similarity=-0.021 Sum_probs=49.3
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhhc--h-hhhHHHHHHHccCcc-------------eEEecCC-cccCH
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKYT--A-DDTLMEAAAKIEGIS-------------AGYESEN-CVIHP 63 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~~--~-d~~l~elA~~TEGfS-------------aay~s~d-~vLt~ 63 (108)
..+..||. -.+.++.|+.++|..||+...+..- . +..++-+|....|=- .||++-. ..+|-
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~ 333 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYV 333 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 56788886 6788888999999999999887642 1 444454555444211 2555433 35788
Q ss_pred HHHHHHHHHHHH
Q 037509 64 SLSYVIVDYKVS 75 (108)
Q Consensus 64 ~~~~~~v~~~v~ 75 (108)
+++.+++.+.+.
T Consensus 334 ~~~~~~l~~~~~ 345 (445)
T PRK12422 334 DDIKALLHDVLE 345 (445)
T ss_pred HHHHHHHHHhhh
Confidence 888888876543
No 79
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=62.37 E-value=16 Score=32.62 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=39.0
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhch------------hhhHHHHHHHccCcceEEec
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA------------DDTLMEAAAKIEGISAGYES 56 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~------------d~~l~elA~~TEGfSaay~s 56 (108)
..++|||++|.|.--+.++..+|+++.+++... +..++.||+. ||+.-||-
T Consensus 635 ef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~--~~~~~~Ga 697 (731)
T TIGR02639 635 EFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEK--GYDEEFGA 697 (731)
T ss_pred HHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHh--CCCcccCc
Confidence 457899999999999999999999999985421 4455666663 67766654
No 80
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=61.16 E-value=32 Score=26.77 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=48.8
Q ss_pred ceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccC-cc---------eEEecCCcccCHHHHHHHHHHHH
Q 037509 10 VELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEG-IS---------AGYESENCVIHPSLSYVIVDYKV 74 (108)
Q Consensus 10 De~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEG-fS---------aay~s~d~vLt~~~~~~~v~~~v 74 (108)
-..++|+.|+..+....++.++++.-. ...++.++..+.| ++ +.|+.+.. +|.++++.++....
T Consensus 138 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~-It~~~I~~~i~~~~ 214 (340)
T PRK05574 138 AVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGK-ITLEDVEEAVPDSA 214 (340)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHhhhh
Confidence 478899999999999999999987622 6677888888876 22 57766544 99999888766543
No 81
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=60.98 E-value=27 Score=31.03 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=51.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..|..|. ..++|..|+.++-.+.|+..+++.-. +..++.|+..++|.- .+|+ .+.+|.+.++.+
T Consensus 177 ~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g--~g~It~e~V~~l 253 (598)
T PRK09111 177 VTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHG--AGEVTAEAVRDM 253 (598)
T ss_pred HHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc--CCCcCHHHHHHH
Confidence 4566777 57999999999999999998876522 567888899998864 4675 467898888876
Q ss_pred HH
Q 037509 70 VD 71 (108)
Q Consensus 70 v~ 71 (108)
+.
T Consensus 254 lg 255 (598)
T PRK09111 254 LG 255 (598)
T ss_pred hC
Confidence 54
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=60.17 E-value=23 Score=29.92 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=47.0
Q ss_pred hhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc-------eEEecCCcccCHHHHHHHH
Q 037509 6 SHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS-------AGYESENCVIHPSLSYVIV 70 (108)
Q Consensus 6 ~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS-------aay~s~d~vLt~~~~~~~v 70 (108)
+++.-..|+|+.|+.++...+|+..+++.-. +..++.||+.+.|=- .+|+.+.+.+|.+.+..++
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG 222 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh
Confidence 3455678999999999999999998876422 677889998887733 2355555677777665443
No 83
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=59.65 E-value=28 Score=30.38 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=46.3
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+..|..|.. .++|+.|+.++-...|+..+++.- .+..+..+|..++|=- .+|+ ++.+|.+.+..
T Consensus 163 ~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~--~~~It~~~V~~ 239 (559)
T PRK05563 163 PATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG--DGKVTYEDALE 239 (559)
T ss_pred cHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cCCCCHHHHHH
Confidence 356777874 689999999999999998887642 2567888999998832 4675 45677664443
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=59.58 E-value=18 Score=32.93 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=39.8
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhch------------hhhHHHHHHHccCcceEEec
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA------------DDTLMEAAAKIEGISAGYES 56 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~------------d~~l~elA~~TEGfSaay~s 56 (108)
..+.|+|++|.|.--+.++-.+|+++.+++... +..++.+|+. ||+..||-
T Consensus 705 eflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~--~~~~~~GA 767 (821)
T CHL00095 705 EFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEE--GYNPLYGA 767 (821)
T ss_pred HHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHh--cCCCCCCh
Confidence 468899999999999999999999999986421 4456666664 78766655
No 85
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=58.37 E-value=35 Score=25.96 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=46.7
Q ss_pred ceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHHH
Q 037509 10 VELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIVD 71 (108)
Q Consensus 10 De~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v~ 71 (108)
-..++|+.|+..+..+.++.++++.-. +..++.++..+.|=. ++|.. ++.+|.+.+..++.
T Consensus 103 ~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~-~~~It~e~I~~~~~ 176 (302)
T TIGR01128 103 AQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAP-DGKITLEDVEEAVS 176 (302)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCC-CCCCCHHHHHHHHh
Confidence 457899999999999999999987622 667888888887633 56743 34789998887765
No 86
>CHL00095 clpC Clp protease ATP binding subunit
Probab=58.06 E-value=20 Score=32.56 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=37.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh---c----hhhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---T----ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~----~d~~l~elA~~TEGfS 51 (108)
.|+.+||. .|+++.|+.++...|++.....| . .+..+..++..+.||-
T Consensus 327 ~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 327 PALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred HHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 37889996 47999999999999998655433 1 1677889999999987
No 87
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=57.36 E-value=24 Score=30.55 Aligned_cols=45 Identities=20% Similarity=0.026 Sum_probs=31.8
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKI 47 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~T 47 (108)
-.|+++|+.+ +.|+-++.+++.+|++..+++.-. +..++.++..+
T Consensus 248 ~paLrsR~~~-I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~ 295 (531)
T TIGR02902 248 PPALRSRCVE-IFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA 295 (531)
T ss_pred ChHHhhhhhe-eeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh
Confidence 3578899865 566666789999999999987532 44455555544
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=56.48 E-value=26 Score=26.69 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=36.2
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhh--ch-hhhHHHHHHHccCc
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY--TA-DDTLMEAAAKIEGI 50 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~--~~-d~~l~elA~~TEGf 50 (108)
..+..|+- -++++.-|+.++|.++|+...... .. +..++-|++..+|=
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCC
Confidence 45667876 788999999999999998855542 22 66778888877753
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.05 E-value=38 Score=29.10 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=49.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++..|+ .+++|..|+.++...+++..+++.- .+..++.||..+.|=- +.|+. +.+|.+.+.++
T Consensus 162 ~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~--~~It~e~V~~~ 238 (472)
T PRK14962 162 PTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE--GKITLETVHEA 238 (472)
T ss_pred HHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 5678888 5899999999999999998887532 2667888998887643 34532 35898888776
Q ss_pred HH
Q 037509 70 VD 71 (108)
Q Consensus 70 v~ 71 (108)
+.
T Consensus 239 l~ 240 (472)
T PRK14962 239 LG 240 (472)
T ss_pred Hc
Confidence 64
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=54.37 E-value=40 Score=30.90 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=48.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCc-c---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGI-S---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGf-S---------aay~s~d~vLt~~~~~~ 68 (108)
+.+|..|. .+++|..|+.++-...|+..+.+.-. +..+..+|..+.|- . ++|+ .+.+|.+.+..
T Consensus 162 l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~--~~~It~e~V~e 238 (725)
T PRK07133 162 PLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG--NNKITLKNVEE 238 (725)
T ss_pred hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cCCCCHHHHHH
Confidence 45688888 48999999999999999888776422 45688899999883 3 5676 35577776665
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
+
T Consensus 239 l 239 (725)
T PRK07133 239 L 239 (725)
T ss_pred H
Confidence 4
No 91
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=53.66 E-value=24 Score=31.71 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=46.6
Q ss_pred hhhhhccce--EEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCC-cccCHHHH
Q 037509 3 IQLSHHNVE--LLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESEN-CVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfDe--~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d-~vLt~~~~ 66 (108)
..+..||.- ++++..||.+.|..||+..++..-. +..++-||...++-- .+|++-. -.+|.++.
T Consensus 429 ~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la 508 (617)
T PRK14086 429 DRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 508 (617)
T ss_pred HHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 345667754 4588889999999999999885422 556666666655322 2344322 24677777
Q ss_pred HHHHHHHHH
Q 037509 67 YVIVDYKVS 75 (108)
Q Consensus 67 ~~~v~~~v~ 75 (108)
.+++...+.
T Consensus 509 ~~vL~~~~~ 517 (617)
T PRK14086 509 EIVLRDLIP 517 (617)
T ss_pred HHHHHHhhc
Confidence 776665443
No 92
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=49.62 E-value=28 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=26.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLD 32 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~ 32 (108)
.|+++|| ++|.|+-++.+|..+|.+.|+.
T Consensus 479 ~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 479 APLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred HHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 6899999 5899999999999999999996
No 93
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=49.49 E-value=22 Score=27.46 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=25.2
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYL 31 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl 31 (108)
.|..+|| -.++++.|+.++-.+|++..+
T Consensus 171 ~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 171 DALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 5789999 689999999999999999876
No 94
>PRK10865 protein disaggregation chaperone; Provisional
Probab=47.55 E-value=35 Score=31.40 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=29.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.+.+.|+|.++.|.-|+.+.-.+|++.++++.
T Consensus 751 PELlnRld~iivF~PL~~edl~~Iv~~~L~~l 782 (857)
T PRK10865 751 PEFINRIDEVVVFHPLGEQHIASIAQIQLQRL 782 (857)
T ss_pred HHHHHhCCeeEecCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999764
No 95
>PLN03025 replication factor C subunit; Provisional
Probab=47.17 E-value=39 Score=26.72 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=45.4
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc--------eEEecCCcccCHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS--------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS--------aay~s~d~vLt~~~~~~~ 69 (108)
+.++..|. ..++|+.|+.++....|+..+++.- .+..++.++..+.|=- ++|.. .+.+|.+.+.++
T Consensus 143 ~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~-~~~i~~~~v~~~ 219 (319)
T PLN03025 143 IEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG-FGFVNQENVFKV 219 (319)
T ss_pred chhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHH
Confidence 35677787 5899999999999999988887642 2667778887777622 33422 356776666553
No 96
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=46.73 E-value=26 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=34.5
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHcc
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIE 48 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TE 48 (108)
++.|||=-.|.|.-|+.++=.+|++.|++++-.+.+-+++-.+..
T Consensus 180 SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 180 SLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEAL 224 (249)
T ss_pred hHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 578999999999999999999999999997744333333333333
No 97
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=46.56 E-value=40 Score=28.62 Aligned_cols=69 Identities=6% Similarity=-0.023 Sum_probs=46.7
Q ss_pred hhhccc--eEEecCCCCHHHHHHHHHHHHhhh-----chhhhHHHHHHHccCcc----------eEEecCC---cccCHH
Q 037509 5 LSHHNV--ELLEFPLPGKEECFKLLKLYLDKY-----TADDTLMEAAAKIEGIS----------AGYESEN---CVIHPS 64 (108)
Q Consensus 5 V~~RfD--e~Ief~LPd~eeR~~ILklyl~k~-----~~d~~l~elA~~TEGfS----------aay~s~d---~vLt~~ 64 (108)
+..||. -++.+.-|+.++|..||+..++.. +.+..++.||..+.|-- .+++.-. ..+|.+
T Consensus 260 L~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~ 339 (450)
T PRK14087 260 LITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIE 339 (450)
T ss_pred HHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence 444553 456688999999999999999752 22666777887777654 1222222 468888
Q ss_pred HHHHHHHHH
Q 037509 65 LSYVIVDYK 73 (108)
Q Consensus 65 ~~~~~v~~~ 73 (108)
++.+++.+.
T Consensus 340 ~v~~~l~~~ 348 (450)
T PRK14087 340 IVSDLFRDI 348 (450)
T ss_pred HHHHHHhhc
Confidence 888777654
No 98
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=45.66 E-value=55 Score=28.78 Aligned_cols=77 Identities=8% Similarity=-0.012 Sum_probs=49.5
Q ss_pred hhhhhhccceEEecC-CCCHHHHHHHHHHHHhhhc--------------h------------hhhHHHHHHHc--cCcc-
Q 037509 2 LIQLSHHNVELLEFP-LPGKEECFKLLKLYLDKYT--------------A------------DDTLMEAAAKI--EGIS- 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~-LPd~eeR~~ILklyl~k~~--------------~------------d~~l~elA~~T--EGfS- 51 (108)
..++.+||+-.+..+ +|+.++|.+|++..+..+. . +..++.++..+ -|.|
T Consensus 144 ~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s 223 (589)
T TIGR02031 144 PDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISG 223 (589)
T ss_pred CHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCC
Confidence 468899999877664 6788999999998773221 0 22333333322 2222
Q ss_pred -------------eEEecCCcccCHHHHHHHHHHHHHhhHH
Q 037509 52 -------------AGYESENCVIHPSLSYVIVDYKVSKHQQ 79 (108)
Q Consensus 52 -------------aay~s~d~vLt~~~~~~~v~~~v~eh~q 79 (108)
.|+-.+...++++.+..++...+. |..
T Consensus 224 ~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~-hR~ 263 (589)
T TIGR02031 224 HRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLL-PRA 263 (589)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-hhc
Confidence 255566778899999988887665 443
No 99
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=45.62 E-value=87 Score=24.49 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=44.9
Q ss_pred ccceEEecCCC---CHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEe-cCCcccCHHHHHHHH
Q 037509 8 HNVELLEFPLP---GKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYE-SENCVIHPSLSYVIV 70 (108)
Q Consensus 8 RfDe~Ief~LP---d~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~-s~d~vLt~~~~~~~v 70 (108)
...++.+|..| +.++..+.++..+++.-. ...++.++..+.|=- +.|+ .+++.+|.+.++.+|
T Consensus 117 k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v 196 (326)
T PRK07452 117 KLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALV 196 (326)
T ss_pred HceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHh
Confidence 35667888766 345567778888876532 567777887777622 6786 456789999988887
Q ss_pred HH
Q 037509 71 DY 72 (108)
Q Consensus 71 ~~ 72 (108)
..
T Consensus 197 ~~ 198 (326)
T PRK07452 197 SN 198 (326)
T ss_pred cc
Confidence 54
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.96 E-value=51 Score=28.55 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=43.8
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..|..|. ..++|.-++.++-.+.++..+++.- .+..+..+++.++|-- .+|| .+.+|.+.+.++
T Consensus 164 ~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~--~~~It~~~V~~~ 240 (509)
T PRK14958 164 VTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYG--NGKVLIADVKTM 240 (509)
T ss_pred HHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC--CCCcCHHHHHHH
Confidence 4566676 6677887778777777777776542 2567888999988833 5775 466777655544
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=43.71 E-value=53 Score=24.81 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=27.5
Q ss_pred hhccce--EEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHcc
Q 037509 6 SHHNVE--LLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIE 48 (108)
Q Consensus 6 ~~RfDe--~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TE 48 (108)
..||-- ++++.-|+.+.|.+|++...+..-. +..++-||+..+
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~ 199 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR 199 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc
Confidence 345544 6888999999999999999986422 556666776654
No 102
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=43.64 E-value=53 Score=27.93 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=24.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLY 30 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILkly 30 (108)
-+.++|+|.++.|.--+.++..+|+..-
T Consensus 303 PEflgRld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 303 PEFIGRLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred HHHhCCCCeEeecCCCCHHHHHHHHHHH
Confidence 4678999999999888999999998874
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=43.38 E-value=65 Score=23.77 Aligned_cols=45 Identities=11% Similarity=-0.031 Sum_probs=32.2
Q ss_pred hhhcc--ceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccC
Q 037509 5 LSHHN--VELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEG 49 (108)
Q Consensus 5 V~~Rf--De~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEG 49 (108)
+..|+ ...+++|.|+.+++..+++.+..+.-. +..++.++....|
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 34477 468999999999999999887765422 5566777765554
No 104
>PRK07217 replication factor A; Reviewed
Probab=42.68 E-value=9.8 Score=31.54 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.0
Q ss_pred hhhhccceEE-ecCCCCHHHHHHHHHHHHhhhch
Q 037509 4 QLSHHNVELL-EFPLPGKEECFKLLKLYLDKYTA 36 (108)
Q Consensus 4 AV~~RfDe~I-ef~LPd~eeR~~ILklyl~k~~~ 36 (108)
-|-.|++..| +|..|-.|+++.+++.|++++-.
T Consensus 26 ~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g~ 59 (311)
T PRK07217 26 DVEERLDTLVTEFKVPEDEARRSVTNYYLKEAGI 59 (311)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 3567888889 99999999999999999999843
No 105
>PRK06620 hypothetical protein; Validated
Probab=42.38 E-value=61 Score=24.51 Aligned_cols=48 Identities=13% Similarity=-0.071 Sum_probs=35.5
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhh--ch-hhhHHHHHHHccCc
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY--TA-DDTLMEAAAKIEGI 50 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~--~~-d~~l~elA~~TEGf 50 (108)
.++..|+- -++++.-|+.+++..+++..++.. .. +..++-|++..+|=
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCC
Confidence 34566774 368999999999999999988743 12 66777777777653
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=42.26 E-value=64 Score=27.04 Aligned_cols=47 Identities=17% Similarity=0.114 Sum_probs=35.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TEGfS 51 (108)
+.+|..|. ..++|+.|+.++..+.|..... +.+.....+|..+.|..
T Consensus 161 lpTIrSRc-~~i~f~~~~~~~i~~~L~~~~~--~~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 161 LPTIRSRC-RHVALRTPSVEAVAEVLVRRDG--VDPETARRAARASQGHI 207 (394)
T ss_pred hHHHHhhC-eEEECCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHcCCCH
Confidence 56788887 7999999999998777763221 22456778888999876
No 107
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=42.25 E-value=56 Score=27.61 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHH----HHhhhch------------hhhHHHHHHHccCcceEEec
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKL----YLDKYTA------------DDTLMEAAAKIEGISAGYES 56 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILkl----yl~k~~~------------d~~l~elA~~TEGfSaay~s 56 (108)
-..++|+|.++.|.--+.++..+|+.. .+++|.. +..++.||++ ||+.-||.
T Consensus 297 PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~--~~~~~~GA 364 (412)
T PRK05342 297 PEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKK--AIERKTGA 364 (412)
T ss_pred HHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh--CCCCCCCC
Confidence 357899999999999999999999984 3333311 5566777775 45544433
No 108
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.32 E-value=95 Score=26.89 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=47.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++..|.. .++|+.|+.++-...|+..+++.- .+..++.+++.+.|-- .+| ++.+|.+...++
T Consensus 161 ~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~---~~~It~~~V~~~ 236 (504)
T PRK14963 161 PTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL---GTPVTRKQVEEA 236 (504)
T ss_pred hHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCHHHHHHH
Confidence 45677764 799999999999999999887642 2567888999988854 233 457888876665
Q ss_pred H
Q 037509 70 V 70 (108)
Q Consensus 70 v 70 (108)
+
T Consensus 237 l 237 (504)
T PRK14963 237 L 237 (504)
T ss_pred H
Confidence 3
No 109
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.30 E-value=45 Score=27.48 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=47.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccC-cc---------eEEe---cCCcccCHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEG-IS---------AGYE---SENCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEG-fS---------aay~---s~d~vLt~~~~ 66 (108)
.++..|.. .++|+-|+.++-.+.++..+++. +.+..++.++..+.| ++ .+|+ .+...+|.+.+
T Consensus 172 ~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v 250 (397)
T PRK14955 172 ATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKV 250 (397)
T ss_pred HHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHH
Confidence 45556664 78898888888888888777643 226778899999988 33 4675 23458898877
Q ss_pred HHHH
Q 037509 67 YVIV 70 (108)
Q Consensus 67 ~~~v 70 (108)
...+
T Consensus 251 ~~~v 254 (397)
T PRK14955 251 AELL 254 (397)
T ss_pred HHHH
Confidence 6654
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.81 E-value=1.1e+02 Score=26.84 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=46.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..+..|. .+++|..++..+-..+++..+++.- .+..+..++..+.|-- +.|+ .+.+|.+.+..+
T Consensus 165 ~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~--~~~It~e~V~~l 241 (585)
T PRK14950 165 ATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTY--GGEISLSQVQSL 241 (585)
T ss_pred HHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence 4555665 4689999999999988888887642 2566888888888822 4664 457888877654
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.47 E-value=51 Score=30.87 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=37.8
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
+..|..|. ..+.|.-++.++-...|+..+++.- .+..+..|++.++|--
T Consensus 163 p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 163 PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM 214 (830)
T ss_pred cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 45677888 7888888888888888888876542 2677889999999854
No 112
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.32 E-value=88 Score=28.00 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=47.7
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccC-cc---------eEEe---cCCcccCHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEG-IS---------AGYE---SENCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEG-fS---------aay~---s~d~vLt~~~~ 66 (108)
.+|..|- .+++|.-|+.++-...|+..+++. +.+..++.+|..+.| +. ++|+ -+.+.+|.+.+
T Consensus 172 ~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V 250 (620)
T PRK14954 172 ATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGV 250 (620)
T ss_pred HHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHH
Confidence 4555565 689999999998888888777653 226778899999988 33 5675 23567888766
Q ss_pred HHHH
Q 037509 67 YVIV 70 (108)
Q Consensus 67 ~~~v 70 (108)
.+++
T Consensus 251 ~~lv 254 (620)
T PRK14954 251 AELL 254 (620)
T ss_pred HHHH
Confidence 6654
No 113
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.01 E-value=80 Score=29.06 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=47.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..+..|. .+++|..++.++-.+.|+..+++.-. +..+..||+.+.|-- .+|| .+.+|.+.+..+
T Consensus 163 ~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg--~g~IT~edV~~l 239 (702)
T PRK14960 163 ITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYG--QGAVHHQDVKEM 239 (702)
T ss_pred HHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHH
Confidence 4566777 68899999999998888888876422 667889999998833 4675 466777766554
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=38.70 E-value=98 Score=27.24 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=46.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+.+|..|.- .++|..|+.++..+.|+..+++.-. +..+..||+.+.|-- ++|+. +.+|.+.+..
T Consensus 163 ~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~--~~It~e~V~~ 239 (563)
T PRK06647 163 PATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD--SDITLEQIRS 239 (563)
T ss_pred HHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 456777876 6899999999999999888765321 667888999888833 46653 5577664444
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.16 E-value=81 Score=27.48 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..|..|. ..++|..|+.++....++..+++.- .+..+..|++.++|-- +.|+. +.+|.+.+.++
T Consensus 161 ~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~--~~It~e~V~~l 237 (491)
T PRK14964 161 VTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSN--NKISEKSVRDL 237 (491)
T ss_pred HHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 3566666 6789999999999999998887642 2677889999998733 46765 46777766654
No 116
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.11 E-value=98 Score=27.31 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=48.2
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccC-cc---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEG-IS---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEG-fS---------aay~s~d~vLt~~~~~~ 68 (108)
+.+|..|. ..++|.-|+.++-.+.|+..+++.-. +..+..+|..+.| +- ++|+. +.+|.+.+++
T Consensus 163 l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~--~~It~~~V~~ 239 (546)
T PRK14957 163 PVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG--GELKQAQIKQ 239 (546)
T ss_pred hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--CCCCHHHHHH
Confidence 34577777 88999999999988888887776422 6678889999988 22 45654 6788877776
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
.
T Consensus 240 ~ 240 (546)
T PRK14957 240 M 240 (546)
T ss_pred H
Confidence 4
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=37.99 E-value=80 Score=28.40 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=47.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+.++..|.. +++|+.|+.++-...|+..+.+.- .+..+..++..+.|-- +.|+. +.+|.+.+++
T Consensus 163 l~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~--~~It~e~V~e 239 (605)
T PRK05896 163 PLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKN--SEIDIEDINK 239 (605)
T ss_pred hHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 456788875 799999999999999988887642 2567888999998833 45654 3378776665
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
+
T Consensus 240 l 240 (605)
T PRK05896 240 T 240 (605)
T ss_pred H
Confidence 3
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=35.69 E-value=94 Score=26.37 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=46.2
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccC-cc---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEG-IS---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEG-fS---------aay~s~d~vLt~~~~~~ 68 (108)
+.++..|.. .++|+-|+.++-.+.|+..+++.- .+..++.++..+.| +. +.|. .+.+|.+.+..
T Consensus 165 ~~tI~sRc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~--~~~It~~~V~~ 241 (451)
T PRK06305 165 PGTILSRCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLF--PKSLDPDSVAK 241 (451)
T ss_pred chHHHHhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--cCCcCHHHHHH
Confidence 456777874 689999999998888888887642 25678889988888 33 3453 24477776654
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
+
T Consensus 242 l 242 (451)
T PRK06305 242 A 242 (451)
T ss_pred H
Confidence 4
No 119
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=35.67 E-value=1.1e+02 Score=25.03 Aligned_cols=77 Identities=9% Similarity=-0.067 Sum_probs=52.6
Q ss_pred hhhhhhccceEEecCCCCH-HHHHHHHHHHHhh----------h----------ch------------h---hhHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGK-EECFKLLKLYLDK----------Y----------TA------------D---DTLMEAAA 45 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~-eeR~~ILklyl~k----------~----------~~------------d---~~l~elA~ 45 (108)
..+..+||.=.+.++-|.. ++|.+|++..... + +. + ..+.+++.
T Consensus 189 ~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~ 268 (337)
T TIGR02030 189 RPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCA 268 (337)
T ss_pred CHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 3578999999999999986 9999999884221 1 00 2 23555666
Q ss_pred HccCcc-------------eEEecCCcccCHHHHHHHHHHHHHhhHH
Q 037509 46 KIEGIS-------------AGYESENCVIHPSLSYVIVDYKVSKHQQ 79 (108)
Q Consensus 46 ~TEGfS-------------aay~s~d~vLt~~~~~~~v~~~v~eh~q 79 (108)
.|..-| .|+-.+...+|++.+..++.-.+. |..
T Consensus 269 ~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~-HR~ 314 (337)
T TIGR02030 269 ELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALR-HRL 314 (337)
T ss_pred HHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-HhC
Confidence 665445 255556668899999988886665 544
No 120
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]
Probab=35.20 E-value=25 Score=31.19 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=46.9
Q ss_pred EEecCCCCHHHHHHHHHHHHhhhch--------------hhhHHHHHHHccCcceEEecCCcccCHHHHHHHHHHHHHhh
Q 037509 12 LLEFPLPGKEECFKLLKLYLDKYTA--------------DDTLMEAAAKIEGISAGYESENCVIHPSLSYVIVDYKVSKH 77 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILklyl~k~~~--------------d~~l~elA~~TEGfSaay~s~d~vLt~~~~~~~v~~~v~eh 77 (108)
.+++|+|..+||.+|..+|.+..-. ...-.-+|.-|.-|+ -|+--.+.+|++..-.+|+..
T Consensus 430 ~le~p~~~~~erq~L~~~y~rl~~~l~s~s~~l~~i~~~~e~e~llaWvT~~Fe-LY~i~~p~vtka~ai~~v~Kl---- 504 (523)
T KOG0997|consen 430 GLEAPYKSETERQRLYAIYARLHSRLHSKSRPLRTIYTVKEKEVLLAWVTGTFE-LYCIFNPLVTKALAIKVVNKL---- 504 (523)
T ss_pred cccCCcCChHHHHHHHHHHHHHhhhhhccCCcceEEEEecCceEEEEEeccceE-EEEecccchhHHHHHHHHHHH----
Confidence 4789999999999999999874311 222233444455554 555556999999988888754
Q ss_pred HHHHHHHhhcC
Q 037509 78 QQRRKLAAIGG 88 (108)
Q Consensus 78 ~qk~~~~~~~~ 88 (108)
++|.+.++
T Consensus 505 ---lrWikkeE 512 (523)
T KOG0997|consen 505 ---LRWIKKEE 512 (523)
T ss_pred ---HHHHHhhh
Confidence 35765543
No 121
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=34.78 E-value=1.5e+02 Score=26.02 Aligned_cols=49 Identities=16% Similarity=-0.035 Sum_probs=39.4
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TEGfS 51 (108)
.|++| |+|-.|+++.=+.++=+.|.+.||.---....++++.+..+|-+
T Consensus 353 PALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~ 403 (457)
T KOG0743|consen 353 PALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE 403 (457)
T ss_pred HhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc
Confidence 47777 99999999999999999999999974212457788888777765
No 122
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.41 E-value=1.5e+02 Score=27.14 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=46.8
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh----------chhhhHHHHHHHccCcc---------eEEe---cCCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY----------TADDTLMEAAAKIEGIS---------AGYE---SENCV 60 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~----------~~d~~l~elA~~TEGfS---------aay~---s~d~v 60 (108)
.|+..|. .+++|+-|+.++...|++..+.+. +.+..++.|++.+.|=- ++.. .+.++
T Consensus 154 ~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~ 232 (725)
T PRK13341 154 KALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGL 232 (725)
T ss_pred hHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCc
Confidence 4566674 579999999999999999999731 11566788888876633 2221 22233
Q ss_pred --cCHHHHHHHHHH
Q 037509 61 --IHPSLSYVIVDY 72 (108)
Q Consensus 61 --Lt~~~~~~~v~~ 72 (108)
+|.++..+++..
T Consensus 233 i~It~~~~~e~l~~ 246 (725)
T PRK13341 233 IDITLAIAEESIQQ 246 (725)
T ss_pred eeccHHHHHHHHHH
Confidence 787777777655
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.02 E-value=1.3e+02 Score=27.94 Aligned_cols=65 Identities=9% Similarity=-0.096 Sum_probs=43.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+.+|..|. .+++|..+..++-.++|+..+++.-. +..+..+++.+.|-- .+|. +++.||.+.+..
T Consensus 164 l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~-~~~~IT~e~V~a 241 (824)
T PRK07764 164 IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGA-GPEGVTYERAVA 241 (824)
T ss_pred hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCCCCHHHHHH
Confidence 45667776 67899999999988888888865322 456677788877721 3443 345576664443
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=32.55 E-value=94 Score=23.61 Aligned_cols=48 Identities=10% Similarity=0.020 Sum_probs=33.2
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhh--ch-hhhHHHHHHHccCc
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKY--TA-DDTLMEAAAKIEGI 50 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~--~~-d~~l~elA~~TEGf 50 (108)
..+..|+- -++.+.-|+.++|.++++...... .. +..++-+|+..+|=
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 34556664 567788999999999999666542 12 66677777776653
No 125
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.07 E-value=1.8e+02 Score=26.18 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=45.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
..|..|. ..++|.-++.++-.+.|+..+++.-. +..+..|++.++|-= .+|| .+.+|.+.++++
T Consensus 169 ~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~--~~~It~~~V~~~ 245 (618)
T PRK14951 169 VTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFG--SGQLQEAAVRQM 245 (618)
T ss_pred HHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHH
Confidence 4567776 77888888888888888888765422 556888999888832 4675 456776666554
No 126
>smart00350 MCM minichromosome maintenance proteins.
Probab=27.93 E-value=78 Score=27.12 Aligned_cols=31 Identities=16% Similarity=-0.022 Sum_probs=26.0
Q ss_pred hhhhhccceEEec-CCCCHHHHHHHHHHHHhh
Q 037509 3 IQLSHHNVELLEF-PLPGKEECFKLLKLYLDK 33 (108)
Q Consensus 3 ~AV~~RfDe~Ief-~LPd~eeR~~ILklyl~k 33 (108)
.++++|||=++.. +-|+.+...+|.+..++.
T Consensus 371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 371 APILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred hHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 5789999997555 889999999999987653
No 127
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=27.14 E-value=38 Score=20.11 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=17.2
Q ss_pred hhhhccceEEec-CCCCHHHHHHHHHHHHhhh
Q 037509 4 QLSHHNVELLEF-PLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 4 AV~~RfDe~Ief-~LPd~eeR~~ILklyl~k~ 34 (108)
+|++.++..-.. +||-. |+.|++.|
T Consensus 13 ~In~~~~~~~~~~~LP~~------Lk~yL~~Y 38 (42)
T cd03737 13 TVNGHLDSYEKRTQLPLP------IKEFLDQY 38 (42)
T ss_pred HHHHhcCcccchhhccHH------HHHHHHhC
Confidence 677777665333 77762 88888876
No 128
>PRK05629 hypothetical protein; Validated
Probab=27.12 E-value=2.2e+02 Score=22.43 Aligned_cols=65 Identities=5% Similarity=-0.190 Sum_probs=43.4
Q ss_pred hccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v~~~ 73 (108)
+..-..++|..|...+..+.++..+++.-. ...++.++..+.|=- +.|. ++.+|.+.++.+|...
T Consensus 115 ~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~--~~~It~e~V~~~v~~~ 192 (318)
T PRK05629 115 EKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDT--QGNVTVEKVRAYYVGV 192 (318)
T ss_pred HhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcC--CCCcCHHHHHHHhCCC
Confidence 445577888888888888999999987532 334445555554311 3464 5679999888876544
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.10 E-value=1e+02 Score=28.43 Aligned_cols=63 Identities=8% Similarity=-0.065 Sum_probs=43.6
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.|..|+ ..+.|..++.++-...|+..+++.-. +..+..|++.+.|-- .+|| .+.+|.+.+..+
T Consensus 165 TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g--~g~It~e~V~~l 240 (709)
T PRK08691 165 TVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG--SGKVAENDVRQM 240 (709)
T ss_pred HHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHH
Confidence 455666 44667788888888888888886422 567889999988755 4675 456776655554
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.74 E-value=2.3e+02 Score=25.21 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=46.0
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc--h-hhhHHHHHHHccCc-c---------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT--A-DDTLMEAAAKIEGI-S---------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~--~-d~~l~elA~~TEGf-S---------aay~s~d~vLt~~~~~~ 68 (108)
+.+|..|. .+++|..++.++-.+.|+.++++.- . +..+..++..+.|- . ++|+. ++.+|.+.+..
T Consensus 162 l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~-~~~It~~~v~~ 239 (584)
T PRK14952 162 LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAA-DTHVTYQRALG 239 (584)
T ss_pred HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-CCCcCHHHHHH
Confidence 45677784 7899999999998888888887642 2 55677888888873 2 45543 55666655544
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
+
T Consensus 240 l 240 (584)
T PRK14952 240 L 240 (584)
T ss_pred H
Confidence 4
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=26.66 E-value=2e+02 Score=25.40 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=44.4
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSY 67 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~ 67 (108)
+.+|..|. .+++|..|+.++-.+.++..+++.- .+..+..+|..+.|-- .+|+ .+.+|.+.+.
T Consensus 161 ~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~--~~~It~~~V~ 236 (535)
T PRK08451 161 PATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYC--KNAITESKVA 236 (535)
T ss_pred chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CCCCCHHHHH
Confidence 45778885 6889999999888888888777531 2667888888888833 3565 3455665444
No 132
>PRK07914 hypothetical protein; Reviewed
Probab=26.61 E-value=2.2e+02 Score=22.50 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=41.8
Q ss_pred eEEecCCC-CHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHHHHH
Q 037509 11 ELLEFPLP-GKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 11 e~Ief~LP-d~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v~~~ 73 (108)
.+++|..| +..+..+.++..+++.-. ...++.++..++|=. +.|. ++.+|.+.++.+|...
T Consensus 120 ~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~--~~~It~e~V~~~v~~~ 194 (320)
T PRK07914 120 EVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADT--GGAVDAAAVRRYHSGK 194 (320)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCC--CCCcCHHHHHHHcCCC
Confidence 47788888 999999999999997532 444555555554422 3443 4679999888876543
No 133
>PHA02750 hypothetical protein; Provisional
Probab=26.51 E-value=2.1e+02 Score=22.50 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred ceEEecCCCCHHHHHHHHHHHH-hhhch------hhhHHHHHHHccCcc---------eEEecCCcccCHHHHHHHHHHH
Q 037509 10 VELLEFPLPGKEECFKLLKLYL-DKYTA------DDTLMEAAAKIEGIS---------AGYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 10 De~Ief~LPd~eeR~~ILklyl-~k~~~------d~~l~elA~~TEGfS---------aay~s~d~vLt~~~~~~~v~~~ 73 (108)
|=++-|.||..++..-=+.... +.+.. ....+.+|.=..|+. .+.+-+=|||++++++++..+.
T Consensus 58 dwiig~r~p~a~dkklefm~~ytrt~~eea~d~rpdiadalarg~aglaf~~td~ma~mvvagkfgvldpnimr~iy~yv 137 (240)
T PHA02750 58 DWIIGFRLPHAEDKKLEFMIEYTRTWGEEAADARPDIADALARGEAGLAFEATDFMADMVVAGKFGVLDPNIMREIYEYV 137 (240)
T ss_pred hheeeeecCCccchhhHHHHHHHHHHHHHHHhcCccHHHHHHhcccccccchhHHHHHHHHhccccccChHHHHHHHHHh
Confidence 5679999999887654443332 22211 233456676667766 4666678999999999987743
Q ss_pred ----HHhh-HHHHHHHhhcCCCcccccceeeeeec
Q 037509 74 ----VSKH-QQRRKLAAIGGGSERFRNDIFILIRH 103 (108)
Q Consensus 74 ----v~eh-~qk~~~~~~~~~~~~~~~~~~~~~~~ 103 (108)
|.|. ..-+..++..-++-|--.|-+|-|-.
T Consensus 138 rd~evaq~~~eardmlkaaypqirr~sdyyisi~a 172 (240)
T PHA02750 138 RDFEVAQFLFEARDMLKAAYPQIRRASDYYISIPA 172 (240)
T ss_pred cChhHHHHHHHHHHHHHhhhhhhhhhhheeEecch
Confidence 3332 24466777777888888888887654
No 134
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.18 E-value=1.6e+02 Score=25.89 Aligned_cols=64 Identities=8% Similarity=-0.099 Sum_probs=43.7
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
..+|..|. .++.|..++.++-...|+..+++.- .+..+..||+.++|-- .+++ ++.+|.+.+.+
T Consensus 165 ~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~ 241 (484)
T PRK14956 165 PETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRK 241 (484)
T ss_pred cHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC--CCCcCHHHHHH
Confidence 45777887 4577877777777777777776541 2678899999999875 2343 34677766544
No 135
>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity. Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.
Probab=25.88 E-value=1.1e+02 Score=22.96 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.5
Q ss_pred cCCCCHHHHHHHHHHHHhhhc--hhhhHHHHHHHccCcc
Q 037509 15 FPLPGKEECFKLLKLYLDKYT--ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 15 f~LPd~eeR~~ILklyl~k~~--~d~~l~elA~~TEGfS 51 (108)
.+||+.++|.+=|+-.|.+.. .+..+.+|-.+..|+-
T Consensus 80 LDl~sdeeR~~~LqelL~~C~~ptE~FI~ELL~kLkgL~ 118 (144)
T PF05361_consen 80 LDLESDEERRRKLQELLQDCPKPTEDFIQELLSKLKGLR 118 (144)
T ss_dssp HCTSSTTHHHHHHHHHHTTCSSTTHHHHHHHHHHCTTT-
T ss_pred hcCCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Confidence 468999999997888887643 2778999999999886
No 136
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=25.86 E-value=83 Score=22.79 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHhhhch--------------hhhHHHHHHHccCcc--eEEecCCcccCHHHHHHHHHHHHH
Q 037509 16 PLPGKEECFKLLKLYLDKYTA--------------DDTLMEAAAKIEGIS--AGYESENCVIHPSLSYVIVDYKVS 75 (108)
Q Consensus 16 ~LPd~eeR~~ILklyl~k~~~--------------d~~l~elA~~TEGfS--aay~s~d~vLt~~~~~~~v~~~v~ 75 (108)
|||... |.+|+.++...... ..-+..+ ..|--.. +.-||+--+.|+++...+.+++-.
T Consensus 17 PLp~~~-R~rIvela~~G~rp~~Isr~l~Vs~gcVsKIl~Ry-~eTGsi~Pg~iGGskprv~tp~v~~~I~~~k~e 90 (125)
T PF00292_consen 17 PLPNEL-RQRIVELAKEGVRPCDISRQLRVSHGCVSKILSRY-RETGSIRPGPIGGSKPRVATPEVVEKIEQYKRE 90 (125)
T ss_dssp SS-HHH-HHHHHHHHHTT--HHHHHHHHT--HHHHHHHHHHH-HHHS-SS----S----SSS-HCHHHHHHHHHHH
T ss_pred cCcHHH-HHHHHHHhhhcCCHHHHHHHHccchhHHHHHHHHH-HHhcccCcccccCCCCCCCChHHHHHHHHHHhc
Confidence 677655 99999999875421 1111222 1222122 344566678999988877776544
No 137
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=25.15 E-value=80 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=25.6
Q ss_pred hhhhhhccceEEecCCCCH-HHHHHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGK-EECFKLLKLYL 31 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~-eeR~~ILklyl 31 (108)
-.+..+||.-.+.++-|.. ++|.+|++...
T Consensus 186 ~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 186 RPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3578999999999998877 99999998753
No 138
>PF01420 Methylase_S: Type I restriction modification DNA specificity domain; InterPro: IPR000055 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the S subunit of type I restriction endonucleases (3.1.21.3 from EC). The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase to modify the DNA, methylating both strands []. Most of the proteins in this family have two copies of the domain.; GO: 0003677 DNA binding, 0006304 DNA modification; PDB: 1YF2_B 2Y7H_A 2Y7C_A 3OKG_A 1YDX_A.
Probab=22.75 E-value=53 Score=21.95 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=15.0
Q ss_pred EEecCCCCHHHHHHHHHHHH
Q 037509 12 LLEFPLPGKEECFKLLKLYL 31 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILklyl 31 (108)
.+.||+|..++..+|.+..-
T Consensus 130 ~~~i~lP~~~eQ~~i~~~l~ 149 (167)
T PF01420_consen 130 NIKIPLPPLEEQQKIVEILD 149 (167)
T ss_dssp HSEEEE-SHHHHHHHHHHHH
T ss_pred eEEEecCCHHHHHHHHHHHH
Confidence 36899999999888877644
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=22.30 E-value=1.1e+02 Score=28.08 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=27.3
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhh
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDK 33 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k 33 (108)
....|||+++.|.-|+.++..+|+.+.+..
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999874
No 140
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.65 E-value=2.2e+02 Score=25.80 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=46.0
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
+..|..|. ..++|.-++.++-...|+..+++.- .+..+..||..++|-= .++ +.+.+|.+.+..
T Consensus 163 l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~--~~~~it~~~v~~ 239 (647)
T PRK07994 163 PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS--GNGQVTTDDVSA 239 (647)
T ss_pred chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCCcCHHHHHH
Confidence 45678885 8889999999998888888776431 1567888999999844 234 345667665554
Q ss_pred H
Q 037509 69 I 69 (108)
Q Consensus 69 ~ 69 (108)
.
T Consensus 240 ~ 240 (647)
T PRK07994 240 M 240 (647)
T ss_pred H
Confidence 3
No 141
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=21.30 E-value=2e+02 Score=24.63 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=41.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccC-cc---------eEEecCCc-ccCHHHHHHHHHHHHHh
Q 037509 11 ELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEG-IS---------AGYESENC-VIHPSLSYVIVDYKVSK 76 (108)
Q Consensus 11 e~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEG-fS---------aay~s~d~-vLt~~~~~~~v~~~v~e 76 (108)
-++++.-|+.+.|..||+.-.+..-. +..+.-+|+..+. +. .+|++-.+ .+|.+...+++.+....
T Consensus 237 l~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 237 LVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 46788899999999999996654311 4444455544221 11 34444444 67777777777666553
No 142
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=21.12 E-value=91 Score=25.14 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.7
Q ss_pred EEecCCCCHHHHHHHHH
Q 037509 12 LLEFPLPGKEECFKLLK 28 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILk 28 (108)
.+.+|+|..+|..+|..
T Consensus 153 ~~~i~lPpl~EQ~~I~~ 169 (461)
T PRK09737 153 TLTFPIPPIAEQKIIAE 169 (461)
T ss_pred cCcccCCCHHHHHHHHH
Confidence 45789999999999986
No 143
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=20.95 E-value=2.6e+02 Score=22.35 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=50.2
Q ss_pred eEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHHHHHHHhh
Q 037509 11 ELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIVDYKVSKH 77 (108)
Q Consensus 11 e~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v~~~v~eh 77 (108)
..+++.-|+.++..+.++..+++.-. ..-++-++..++|=- +.|+.+. .+|.+.+..+|.......
T Consensus 133 ~~~~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~~~ 211 (334)
T COG1466 133 VVVECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAEFN 211 (334)
T ss_pred ceEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCC-cCCHHHHHHHHhccccCC
Confidence 46888999999999999999987533 556677777777533 5776665 999999999887665544
Q ss_pred H
Q 037509 78 Q 78 (108)
Q Consensus 78 ~ 78 (108)
.
T Consensus 212 ~ 212 (334)
T COG1466 212 I 212 (334)
T ss_pred H
Confidence 3
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.9e+02 Score=27.05 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=43.1
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhch------------hhhHHHHHHHccCcceEEecCCcccCHHHHHHHHH
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA------------DDTLMEAAAKIEGISAGYESENCVIHPSLSYVIVD 71 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~------------d~~l~elA~~TEGfSaay~s~d~vLt~~~~~~~v~ 71 (108)
..+.|+|++|.|.-=+.+.-.+|+.+.+++... +...+.+|+ .||...||. -.+...++
T Consensus 678 EFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~--~gyd~~~GA-------RpL~R~Iq 748 (786)
T COG0542 678 EFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAE--KGYDPEYGA-------RPLRRAIQ 748 (786)
T ss_pred HHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH--hccCCCcCc-------hHHHHHHH
Confidence 468899999999999999999999999986522 334444544 355555554 34455555
Q ss_pred HHHH
Q 037509 72 YKVS 75 (108)
Q Consensus 72 ~~v~ 75 (108)
..+.
T Consensus 749 ~~i~ 752 (786)
T COG0542 749 QEIE 752 (786)
T ss_pred HHHH
Confidence 5544
No 145
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.37 E-value=1.5e+02 Score=25.70 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=45.1
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHHH
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVIV 70 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~v 70 (108)
.|..|. ..++|.-|+.++-...|+..+++.- .+..+..+|+.++|-- .+|| .+.+|.+.+...+
T Consensus 165 tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~--~~~I~~~~v~~~~ 241 (527)
T PRK14969 165 TVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYG--GGTVNESEVRAML 241 (527)
T ss_pred hHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHH
Confidence 355555 6788888988888877777776431 2567788999998833 4674 5678887776654
Q ss_pred H
Q 037509 71 D 71 (108)
Q Consensus 71 ~ 71 (108)
.
T Consensus 242 ~ 242 (527)
T PRK14969 242 G 242 (527)
T ss_pred C
Confidence 3
No 146
>PF08849 DUF1819: Putative inner membrane protein (DUF1819); InterPro: IPR014948 These proteins are functionally uncharacterised. Several are annotated as putative inner membrane proteins. ; PDB: 3BHW_A.
Probab=20.06 E-value=1.3e+02 Score=22.21 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=33.9
Q ss_pred ecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc---------------------------eEEecCCcccCHH
Q 037509 14 EFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS---------------------------AGYESENCVIHPS 64 (108)
Q Consensus 14 ef~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS---------------------------aay~s~d~vLt~~ 64 (108)
-|..|+...++++.+...+.+.. +..+.-++. |-+ -.|-+.+..|+.+
T Consensus 43 ilq~~t~~~~kr~~~~i~~Rl~~l~~~~~~~l~~---~~~~~~k~lll~a~~~~~~l~~dF~~eV~~~~~~~~~~~l~~~ 119 (189)
T PF08849_consen 43 ILQKRTESRAKRIAREIRKRLKTLDPELLQLLAE---GDIEEQKQLLLYAIMRTNRLLRDFMREVYREKYRSGDLSLTKE 119 (189)
T ss_dssp TT--------HHHHHHHHHHHTTS-HHHHHHHHH---S-HHHHHHHHHHHHHHH-HHHHHHHHHTHHHHTTSSS-B--HH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHh---CCHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcccCCCHH
Confidence 46677777777777777655432 222222222 222 3777889999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHh
Q 037509 65 LSYVIVDYKVSKHQQRRKLAA 85 (108)
Q Consensus 65 ~~~~~v~~~v~eh~qk~~~~~ 85 (108)
.++..++.+..+|..-..|..
T Consensus 120 d~~~F~~~k~~~~~~i~~WSd 140 (189)
T PF08849_consen 120 DWDAFFEEKAEQDPEIASWSD 140 (189)
T ss_dssp HHHHHHHHHHHH-TTS----H
T ss_pred HHHHHHHHHHhcCCcccccCH
Confidence 999999999988876666643
Done!