Query 037509
Match_columns 108
No_of_seqs 177 out of 364
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.0 2.3E-10 7.8E-15 94.2 6.3 74 3-76 302-392 (405)
2 4b4t_H 26S protease regulatory 99.0 1.9E-10 6.6E-15 96.3 5.1 74 3-76 363-453 (467)
3 4b4t_I 26S protease regulatory 98.9 6.2E-10 2.1E-14 92.7 5.4 72 3-74 336-424 (437)
4 4b4t_M 26S protease regulatory 98.9 5.3E-10 1.8E-14 92.4 4.9 49 3-51 335-387 (434)
5 3kw6_A 26S protease regulatory 98.9 1.3E-09 4.4E-14 69.5 4.4 59 16-74 1-74 (78)
6 4b4t_L 26S protease subunit RP 98.9 2E-09 6.7E-14 89.0 5.4 71 3-73 335-422 (437)
7 4b4t_K 26S protease regulatory 98.8 2.1E-09 7.3E-14 88.5 4.7 71 3-73 326-414 (428)
8 3cf2_A TER ATPase, transitiona 98.6 4.1E-09 1.4E-13 92.8 -0.9 50 3-52 631-684 (806)
9 2krk_A 26S protease regulatory 98.5 5E-08 1.7E-12 64.1 3.5 59 15-73 8-81 (86)
10 1lv7_A FTSH; alpha/beta domain 98.4 4E-07 1.4E-11 67.0 5.8 72 3-74 165-253 (257)
11 1ixz_A ATP-dependent metallopr 98.4 3.7E-07 1.3E-11 67.2 5.1 49 3-51 169-221 (254)
12 3h4m_A Proteasome-activating n 98.4 6.8E-07 2.3E-11 66.3 6.5 75 3-77 171-262 (285)
13 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.2E-07 1.4E-11 66.1 5.2 74 3-76 160-252 (262)
14 1xwi_A SKD1 protein; VPS4B, AA 98.4 5.3E-07 1.8E-11 70.0 5.7 49 3-51 164-215 (322)
15 3eie_A Vacuolar protein sortin 98.3 6.8E-07 2.3E-11 68.7 5.4 49 3-51 169-220 (322)
16 2x8a_A Nuclear valosin-contain 98.3 5.5E-07 1.9E-11 68.7 4.3 49 3-51 161-218 (274)
17 3cf2_A TER ATPase, transitiona 98.2 5.2E-07 1.8E-11 79.5 3.8 49 3-51 355-407 (806)
18 2qp9_X Vacuolar protein sortin 98.2 1.5E-06 5.1E-11 68.3 6.0 50 2-51 201-253 (355)
19 1iy2_A ATP-dependent metallopr 98.2 1.3E-06 4.4E-11 65.4 4.8 49 3-51 193-245 (278)
20 3vlf_B 26S protease regulatory 98.2 4.6E-07 1.6E-11 59.3 1.8 62 19-80 2-78 (88)
21 2zan_A Vacuolar protein sortin 98.2 2.1E-06 7.1E-11 69.5 5.9 50 2-51 285-337 (444)
22 2ce7_A Cell division protein F 98.2 2.1E-06 7E-11 71.4 5.6 72 3-74 169-257 (476)
23 3b9p_A CG5977-PA, isoform A; A 98.1 6.7E-06 2.3E-10 61.3 6.8 49 3-51 174-225 (297)
24 3cf0_A Transitional endoplasmi 98.1 3.5E-06 1.2E-10 64.3 5.2 50 3-52 169-222 (301)
25 3aji_B S6C, proteasome (prosom 98.1 2.3E-06 8E-11 54.6 3.4 55 19-73 2-71 (83)
26 3d8b_A Fidgetin-like protein 1 98.1 1.3E-05 4.5E-10 62.7 8.2 71 3-73 236-334 (357)
27 2r62_A Cell division protease 98.0 1E-07 3.5E-12 70.3 -5.5 73 3-75 166-255 (268)
28 2dhr_A FTSH; AAA+ protein, hex 98.0 2.8E-06 9.5E-11 71.0 2.6 72 3-74 184-272 (499)
29 3vfd_A Spastin; ATPase, microt 97.9 3.7E-05 1.3E-09 60.4 7.8 70 3-72 267-364 (389)
30 3hu3_A Transitional endoplasmi 97.6 6.5E-05 2.2E-09 62.2 5.1 49 3-51 355-407 (489)
31 1ypw_A Transitional endoplasmi 97.4 6E-06 2.1E-10 71.8 -4.1 49 3-51 631-683 (806)
32 2dzn_B 26S protease regulatory 97.3 9.8E-06 3.4E-10 52.0 -2.2 53 21-73 1-68 (82)
33 3t15_A Ribulose bisphosphate c 96.8 0.00085 2.9E-08 51.1 3.3 46 3-52 170-217 (293)
34 3pfi_A Holliday junction ATP-d 96.4 0.0073 2.5E-07 45.5 6.1 70 3-72 169-253 (338)
35 1hqc_A RUVB; extended AAA-ATPa 96.1 0.015 5.1E-07 43.2 6.4 70 3-72 153-237 (324)
36 3uk6_A RUVB-like 2; hexameric 95.9 0.011 3.8E-07 44.8 5.3 71 2-73 244-330 (368)
37 1ypw_A Transitional endoplasmi 95.8 0.005 1.7E-07 53.5 3.3 48 4-51 356-407 (806)
38 3bos_A Putative DNA replicatio 95.8 0.0066 2.2E-07 42.5 3.3 68 3-70 157-240 (242)
39 2chg_A Replication factor C sm 95.6 0.03 1E-06 38.0 6.1 66 2-71 146-224 (226)
40 2r44_A Uncharacterized protein 95.5 0.036 1.2E-06 41.8 6.7 31 3-33 170-200 (331)
41 1njg_A DNA polymerase III subu 94.9 0.052 1.8E-06 37.0 5.4 65 3-70 171-248 (250)
42 3syl_A Protein CBBX; photosynt 94.8 0.036 1.2E-06 41.0 4.7 45 3-47 189-236 (309)
43 1in4_A RUVB, holliday junction 94.4 0.08 2.7E-06 40.6 6.0 71 3-73 165-250 (334)
44 2qby_B CDC6 homolog 3, cell di 94.2 0.17 5.9E-06 38.1 7.4 72 3-74 182-271 (384)
45 3u61_B DNA polymerase accessor 94.2 0.045 1.5E-06 41.0 4.1 69 2-72 150-236 (324)
46 1g8p_A Magnesium-chelatase 38 93.0 0.21 7.2E-06 37.2 6.0 29 2-30 202-231 (350)
47 3pxg_A Negative regulator of g 92.7 0.094 3.2E-06 42.4 3.9 48 3-51 311-365 (468)
48 2z4s_A Chromosomal replication 92.6 0.087 3E-06 42.4 3.5 72 3-74 246-333 (440)
49 3pxi_A Negative regulator of g 92.3 0.11 3.9E-06 44.1 4.0 48 3-51 311-365 (758)
50 2v1u_A Cell division control p 92.2 0.39 1.3E-05 35.8 6.4 72 3-74 185-277 (387)
51 1ofh_A ATP-dependent HSL prote 92.2 0.2 6.7E-06 36.5 4.7 28 2-29 186-213 (310)
52 1r6b_X CLPA protein; AAA+, N-t 91.9 0.12 4.1E-06 43.7 3.7 48 3-51 335-389 (758)
53 4fcw_A Chaperone protein CLPB; 90.3 0.27 9.2E-06 36.1 3.8 32 3-34 201-232 (311)
54 1qvr_A CLPB protein; coiled co 90.1 0.21 7.2E-06 43.2 3.6 48 3-51 318-372 (854)
55 1sxj_D Activator 1 41 kDa subu 89.7 0.39 1.3E-05 35.7 4.4 69 2-71 177-261 (353)
56 1jr3_A DNA polymerase III subu 89.3 0.64 2.2E-05 34.8 5.3 64 3-69 164-240 (373)
57 3pvs_A Replication-associated 89.2 0.51 1.7E-05 38.3 5.0 70 2-72 150-243 (447)
58 1d2n_A N-ethylmaleimide-sensit 88.7 0.26 9E-06 36.0 2.8 46 4-51 184-230 (272)
59 3m6a_A ATP-dependent protease 88.1 0.52 1.8E-05 39.0 4.4 29 3-32 239-267 (543)
60 2chq_A Replication factor C sm 87.2 1.2 4E-05 32.4 5.5 65 2-69 146-222 (319)
61 1sxj_B Activator 1 37 kDa subu 87.0 1.3 4.3E-05 32.3 5.5 67 2-71 151-229 (323)
62 2qby_A CDC6 homolog 1, cell di 85.2 3.5 0.00012 30.4 7.3 72 3-74 181-273 (386)
63 1sxj_E Activator 1 40 kDa subu 84.8 1.6 5.5E-05 32.5 5.3 49 2-51 178-230 (354)
64 1l8q_A Chromosomal replication 84.3 1.4 4.7E-05 32.9 4.7 47 3-51 150-201 (324)
65 1fnn_A CDC6P, cell division co 84.2 1.6 5.5E-05 32.6 5.0 70 3-72 177-273 (389)
66 1r6b_X CLPA protein; AAA+, N-t 83.9 0.96 3.3E-05 38.1 4.1 32 3-34 638-669 (758)
67 1iqp_A RFCS; clamp loader, ext 81.8 2.7 9.1E-05 30.6 5.3 49 2-51 154-205 (327)
68 3hws_A ATP-dependent CLP prote 81.2 2 7E-05 32.7 4.7 27 3-29 241-267 (363)
69 2c9o_A RUVB-like 1; hexameric 79.8 3.1 0.0001 33.2 5.5 71 2-73 351-437 (456)
70 3pxi_A Negative regulator of g 79.7 1.5 5.1E-05 37.2 3.8 32 3-34 647-678 (758)
71 1sxj_A Activator 1 95 kDa subu 77.0 4 0.00014 33.1 5.4 67 6-72 197-273 (516)
72 1a5t_A Delta prime, HOLB; zinc 70.4 7.5 0.00026 29.4 5.2 47 2-51 152-198 (334)
73 3nbx_X ATPase RAVA; AAA+ ATPas 68.8 2.7 9.2E-05 34.8 2.6 30 2-31 166-196 (500)
74 3te6_A Regulatory protein SIR3 67.9 11 0.00036 29.4 5.7 32 3-34 182-214 (318)
75 2c9o_A RUVB-like 1; hexameric 64.8 0.062 2.1E-06 43.1 -7.9 39 6-49 210-252 (456)
76 1w5s_A Origin recognition comp 62.5 20 0.00067 26.8 6.1 70 3-72 200-292 (412)
77 1g41_A Heat shock protein HSLU 62.3 1.6 5.5E-05 35.9 0.0 21 7-27 167-188 (444)
78 1jr3_D DNA polymerase III, del 61.6 13 0.00044 27.8 5.0 69 3-73 128-209 (343)
79 1sxj_C Activator 1 40 kDa subu 54.6 26 0.00088 26.2 5.6 68 2-70 154-236 (340)
80 1qvr_A CLPB protein; coiled co 51.3 10 0.00035 32.7 3.2 32 3-34 742-773 (854)
81 4akg_A Glutathione S-transfera 50.5 15 0.00051 36.6 4.5 31 3-34 1404-1434(2695)
82 3f9v_A Minichromosome maintena 39.5 16 0.00056 30.5 2.5 30 3-33 462-492 (595)
83 2da7_A Zinc finger homeobox pr 36.1 34 0.0011 21.7 3.1 34 14-47 7-42 (71)
84 1um8_A ATP-dependent CLP prote 34.9 51 0.0017 24.9 4.5 27 3-29 258-284 (376)
85 2lqt_A Coiled-coil-helix-coile 32.9 22 0.00076 23.4 1.9 20 12-31 62-81 (85)
86 3lhp_S 4E10_D0_1ISEA_004_N (T9 27.0 16 0.00054 25.6 0.4 25 7-31 32-56 (123)
87 1g41_A Heat shock protein HSLU 25.8 70 0.0024 26.1 4.1 25 3-27 321-345 (444)
88 2ys9_A Homeobox and leucine zi 24.4 58 0.002 20.6 2.7 24 25-48 19-44 (70)
89 1yf2_A Type I restriction-modi 22.9 50 0.0017 24.5 2.5 19 12-30 160-178 (425)
90 1ojl_A Transcriptional regulat 22.8 17 0.00059 27.2 -0.1 29 4-33 160-192 (304)
91 1j2m_A CPI-17, 17-kDa PKC-pote 22.7 98 0.0033 20.8 3.7 36 15-50 60-97 (99)
92 2jz3_A Suppressor of cytokine 22.4 32 0.0011 19.1 1.1 25 4-34 11-36 (40)
93 2juc_A PRE-mRNA-splicing facto 22.0 61 0.0021 19.7 2.4 21 12-32 38-58 (59)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=2.3e-10 Score=94.23 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=61.2
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|++| |||+.|+||+|+.++|.+||+.|++++.. +.+++++|++|+||| | |.-.+...+|.+.
T Consensus 302 pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~D 381 (405)
T 4b4t_J 302 PALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQED 381 (405)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHH
T ss_pred HhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 57887 99999999999999999999999998755 678999999999999 2 2222345789999
Q ss_pred HHHHHHHHHHh
Q 037509 66 SYVIVDYKVSK 76 (108)
Q Consensus 66 ~~~~v~~~v~e 76 (108)
|...++..+.+
T Consensus 382 f~~Al~~v~~~ 392 (405)
T 4b4t_J 382 FELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCc
Confidence 98888766543
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.9e-10 Score=96.34 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=61.7
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|++| |||+.|+||+|+.++|.+||+.|++++.. +.+++.||++|+||| | |.-.+...+|.+.
T Consensus 363 pALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~D 442 (467)
T 4b4t_H 363 PALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKD 442 (467)
T ss_dssp HHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHH
T ss_pred hhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 57887 99999999999999999999999998755 678999999999999 1 2223456789999
Q ss_pred HHHHHHHHHHh
Q 037509 66 SYVIVDYKVSK 76 (108)
Q Consensus 66 ~~~~v~~~v~e 76 (108)
|...++..+..
T Consensus 443 f~~Al~kV~~g 453 (467)
T 4b4t_H 443 FLKAVDKVISG 453 (467)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 98888876653
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=6.2e-10 Score=92.67 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=58.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|++| |||+.|+||+||.++|.+||+.|++++.. +.+++++|+.|+||| | |.-.....+|.+.
T Consensus 336 pALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eD 415 (437)
T 4b4t_I 336 PALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAED 415 (437)
T ss_dssp TTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHH
T ss_pred HHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 57887 99999999999999999999999998755 678999999999999 1 1222344678888
Q ss_pred HHHHHHHHH
Q 037509 66 SYVIVDYKV 74 (108)
Q Consensus 66 ~~~~v~~~v 74 (108)
|...++..+
T Consensus 416 f~~Al~rv~ 424 (437)
T 4b4t_I 416 FKQAKERVM 424 (437)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887776443
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.3e-10 Score=92.38 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=45.4
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++| |||+.|+||+|+.++|.+||+.|++++.. +.+++++|++|+|||
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFN 387 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCC
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCC
Confidence 57877 99999999999999999999999998765 678999999999999
No 5
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=69.52 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHHHHHHHHHHH
Q 037509 16 PLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSLSYVIVDYKV 74 (108)
Q Consensus 16 ~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~~~~~v~~~v 74 (108)
|||+.++|.+||+.|++++.. +.+++.||++|+||| .|.-.....+|.+.|...++..+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999864 789999999999999 23334455788888888887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2e-09 Score=89.04 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=57.8
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~ 65 (108)
.|++| |||+.|+||+|+.++|.+||+.|++++.. +.+++.+|+.|+||| | |.-.+...+|.+.
T Consensus 335 pAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d 414 (437)
T 4b4t_L 335 PALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDD 414 (437)
T ss_dssp TTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 47766 59999999999999999999999998754 778999999999999 1 1222345788888
Q ss_pred HHHHHHHH
Q 037509 66 SYVIVDYK 73 (108)
Q Consensus 66 ~~~~v~~~ 73 (108)
|...++..
T Consensus 415 ~~~Al~~v 422 (437)
T 4b4t_L 415 LMKAVRKV 422 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887643
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.1e-09 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=55.9
Q ss_pred hhhhh--ccceEEecC-CCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcce-------------EEecCCcccCHH
Q 037509 3 IQLSH--HNVELLEFP-LPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGISA-------------GYESENCVIHPS 64 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~-LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfSa-------------ay~s~d~vLt~~ 64 (108)
.|++| |||+.|+|| +|+.++|..|++.++++... +.+++.+|.+|+|||+ |.-.+...+|.+
T Consensus 326 ~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~ 405 (428)
T 4b4t_K 326 PALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405 (428)
T ss_dssp HHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred hhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
Confidence 57887 999999996 99999999999999998754 7789999999999991 111223456777
Q ss_pred HHHHHHHHH
Q 037509 65 LSYVIVDYK 73 (108)
Q Consensus 65 ~~~~~v~~~ 73 (108)
.|.+.+...
T Consensus 406 d~~~A~~~~ 414 (428)
T 4b4t_K 406 DLEEAYATQ 414 (428)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666543
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.59 E-value=4.1e-09 Score=92.79 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=26.2
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcce
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGISA 52 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfSa 52 (108)
.|++| |||++|+||||+.++|.+||+.++++... +.+++.||++|+|||.
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SG 684 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 684 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCH
Confidence 58888 99999999999999999999999998754 7899999999999993
No 9
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.53 E-value=5e-08 Score=64.13 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=46.8
Q ss_pred cCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHHHHHHHHHH
Q 037509 15 FPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 15 f~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~~~~~v~~~ 73 (108)
-..||.++|.+||+.++++... +.++++||++|+||| | |.-.....+|.+.|...++..
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4689999999999999998754 789999999999999 1 222234567888887777644
No 10
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=4e-07 Score=67.03 Aligned_cols=72 Identities=17% Similarity=0.037 Sum_probs=58.2
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-----------e--EEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-----------A--GYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-----------a--ay~s~d~vLt~~~ 65 (108)
.|+.+ |||..++|++|+.++|.+|++.+++++.. +.++..+|..|+||| + |+..+...+|.+.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~ 244 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVE 244 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 45666 99999999999999999999999987644 667899999999999 1 3333345789999
Q ss_pred HHHHHHHHH
Q 037509 66 SYVIVDYKV 74 (108)
Q Consensus 66 ~~~~v~~~v 74 (108)
+.++++..+
T Consensus 245 ~~~a~~~~~ 253 (257)
T 1lv7_A 245 FEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888877653
No 11
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=3.7e-07 Score=67.16 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=43.4
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|+.+ |||..++|++|+.++|.+|++.+.++... +.++..+|..|+|||
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 46666 99999999999999999999999887643 667999999999998
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=6.8e-07 Score=66.25 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=62.7
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.++.+ ||+..++|+.|+.++|.+|++.++++... +.++.++|..|+||| .|.......+|.+.
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d 250 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD 250 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHH
Confidence 45666 99999999999999999999999987644 668999999999999 24444566899999
Q ss_pred HHHHHHHHHHhh
Q 037509 66 SYVIVDYKVSKH 77 (108)
Q Consensus 66 ~~~~v~~~v~eh 77 (108)
+.++++..+.+.
T Consensus 251 ~~~al~~~~~~~ 262 (285)
T 3h4m_A 251 FRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999998876644
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.37 E-value=4.2e-07 Score=66.14 Aligned_cols=74 Identities=14% Similarity=0.011 Sum_probs=54.9
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch----hhhHHHHHHHccCcc-------------eEEecCCcccCH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA----DDTLMEAAAKIEGIS-------------AGYESENCVIHP 63 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~----d~~l~elA~~TEGfS-------------aay~s~d~vLt~ 63 (108)
.|+.+ |||..++|++|+.++|.+|++.++++... +..+..+|..|.||| .|...+...+|.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~ 239 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCB
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 46777 99999999999999999999999987643 335689999999999 344445567888
Q ss_pred HHHHHHHHHHHHh
Q 037509 64 SLSYVIVDYKVSK 76 (108)
Q Consensus 64 ~~~~~~v~~~v~e 76 (108)
+.+..+++.....
T Consensus 240 ~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 240 LNFEYAVERVLAG 252 (262)
T ss_dssp CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC
Confidence 8888887765543
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.35 E-value=5.3e-07 Score=69.96 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=45.2
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
.|+++|||..+++++|+.++|.+|++.++++.. .+.+++.+|+.|+|||
T Consensus 164 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 164 SAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYS 215 (322)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCC
T ss_pred HHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 588999999999999999999999999998763 2789999999999999
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.31 E-value=6.8e-07 Score=68.71 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=45.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
.|+.+|||..++|++|+.++|.+|++.++++.. .+.+++.+|++|+|||
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~s 220 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYS 220 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCC
Confidence 588999999999999999999999999998764 2789999999999999
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.28 E-value=5.5e-07 Score=68.70 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=42.0
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhh---c--hhhhHHHHHHHc--cCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKY---T--ADDTLMEAAAKI--EGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~---~--~d~~l~elA~~T--EGfS 51 (108)
.|++| |||+.|+|++|+.++|.+||+.++++. . .+.+++.+|..| +|||
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~s 218 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 218 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCC
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcC
Confidence 47777 999999999999999999999999642 2 278899999975 5999
No 17
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.24 E-value=5.2e-07 Score=79.54 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=44.8
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++| |||+.|+|++|+.++|.+||+.+++++.. +.++.++|.+|+|||
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 46676 99999999999999999999999998754 789999999999999
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.24 E-value=1.5e-06 Score=68.26 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=45.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
-.|+.+|||..++|++|+.++|..||+.++++.. .+.+++.||+.|+|||
T Consensus 201 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 201 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYS 253 (355)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCC
T ss_pred CHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCC
Confidence 3588999999999999999999999999998763 2789999999999998
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.21 E-value=1.3e-06 Score=65.45 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=43.1
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|+.+ |||..++|++|+.++|.+|++.++++... +.++..+|..|+|||
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 45666 99999999999999999999999987643 667999999999998
No 20
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.19 E-value=4.6e-07 Score=59.32 Aligned_cols=62 Identities=10% Similarity=-0.040 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHHHHHHHHHHHHhhHHH
Q 037509 19 GKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSLSYVIVDYKVSKHQQR 80 (108)
Q Consensus 19 d~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~~~~~v~~~v~eh~qk 80 (108)
|.++|.+||+.++++... +.++++||++|+||| | |.-.....+|.+.|...++..+.....|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~ 78 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKF 78 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-----
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccc
Confidence 568999999999998765 789999999999999 1 2222334688999988887665444333
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.19 E-value=2.1e-06 Score=69.53 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=45.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
..|+++|||..++||+|+.++|..|++.++.+.. .+.+++.||..|+|||
T Consensus 285 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYS 337 (444)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCC
T ss_pred CHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 3588999999999999999999999999998763 2789999999999998
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.16 E-value=2.1e-06 Score=71.38 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=58.6
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-----------eEEec--CCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-----------AGYES--ENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-----------aay~s--~d~vLt~~~ 65 (108)
.|+++ |||+.++|++|+.++|.+|++.++++... +.++..+|..|.||| +.++. +...+|.+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~d 248 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKD 248 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 36665 99999999999999999999999998644 667999999999999 22332 345799999
Q ss_pred HHHHHHHHH
Q 037509 66 SYVIVDYKV 74 (108)
Q Consensus 66 ~~~~v~~~v 74 (108)
+...++..+
T Consensus 249 l~~al~~v~ 257 (476)
T 2ce7_A 249 FEEAIDRVI 257 (476)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 988887654
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=6.7e-06 Score=61.34 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=44.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
.|+.+||+..++|++|+.++|..|++.++++.. .+..++.+|..|+|||
T Consensus 174 ~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~ 225 (297)
T 3b9p_A 174 EAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYS 225 (297)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCC
T ss_pred HHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 578899999999999999999999999998752 2678999999999999
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=3.5e-06 Score=64.29 Aligned_cols=50 Identities=26% Similarity=0.281 Sum_probs=44.5
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcce
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGISA 52 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfSa 52 (108)
.|+.+ |||..++|++|+.++|.+|++.++++... +.+++.+|.+|+|||.
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence 46777 99999999999999999999999987643 6789999999999993
No 25
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.08 E-value=2.3e-06 Score=54.64 Aligned_cols=55 Identities=9% Similarity=0.028 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHHHHHHHHHH
Q 037509 19 GKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 19 d~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~~~~~v~~~ 73 (108)
|.++|.+||+.+++++.. +.+++.+|++|+||| | |.-.....+|.+.|...++..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 679999999999998864 789999999999999 1 222234578998888877754
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.07 E-value=1.3e-05 Score=62.67 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=56.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------e---E------------E
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------A---G------------Y 54 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------a---a------------y 54 (108)
.|+.+||+..+++++|+.++|..|++.++++.. .+.+++.+|+.|+||| | + .
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~ 315 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATIT 315 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 588999999999999999999999999998642 2778999999999999 1 1 1
Q ss_pred ecCCcccCHHHHHHHHHHH
Q 037509 55 ESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 55 ~s~d~vLt~~~~~~~v~~~ 73 (108)
..+...+|.+.|...+...
T Consensus 316 ~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 316 PDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp ---CCCBCHHHHHHHHHHH
T ss_pred ccccCCcCHHHHHHHHHhc
Confidence 1233578888888877654
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.96 E-value=1e-07 Score=70.35 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=56.7
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
.|+.+ ||+..++|++|+.++|.++++.+++++.. +.+++.+|..|+||| .|...+...+|.+.
T Consensus 166 ~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~ 245 (268)
T 2r62_A 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQH 245 (268)
T ss_dssp GGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHH
T ss_pred HhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHH
Confidence 46777 99999999999999999999999987643 567889999999998 13333345788888
Q ss_pred HHHHHHHHHH
Q 037509 66 SYVIVDYKVS 75 (108)
Q Consensus 66 ~~~~v~~~v~ 75 (108)
+.+++.....
T Consensus 246 ~~~a~~~~~~ 255 (268)
T 2r62_A 246 LKEAVERGIA 255 (268)
T ss_dssp HHTSCTTCCC
T ss_pred HHHHHHHHhh
Confidence 7776654433
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.96 E-value=2.8e-06 Score=70.97 Aligned_cols=72 Identities=14% Similarity=0.008 Sum_probs=58.6
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc-----------eEEecC--CcccCHHH
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS-----------AGYESE--NCVIHPSL 65 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS-----------aay~s~--d~vLt~~~ 65 (108)
.|+++ |||+.++|++|+.++|.+||+.++++... +.++..+|..|.||| +.++.. ...+|.+.
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~d 263 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKD 263 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHH
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Confidence 35666 99999999999999999999999887543 678999999999999 234443 34799999
Q ss_pred HHHHHHHHH
Q 037509 66 SYVIVDYKV 74 (108)
Q Consensus 66 ~~~~v~~~v 74 (108)
+.+.++..+
T Consensus 264 l~~al~~v~ 272 (499)
T 2dhr_A 264 LEEAADRVM 272 (499)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998887654
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.89 E-value=3.7e-05 Score=60.38 Aligned_cols=70 Identities=24% Similarity=0.122 Sum_probs=56.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------e---------------EE
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------A---------------GY 54 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------a---------------ay 54 (108)
.|+.+||+..++|++|+.++|..|++.++.+.. .+..+..+|..|+||| + +.
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~ 346 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMS 346 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCS
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 588999999999999999999999999998742 2778999999999999 1 11
Q ss_pred ecCCcccCHHHHHHHHHH
Q 037509 55 ESENCVIHPSLSYVIVDY 72 (108)
Q Consensus 55 ~s~d~vLt~~~~~~~v~~ 72 (108)
.++...++.+.+...+..
T Consensus 347 ~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 347 ASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp SSCCCCCCHHHHHHHHHH
T ss_pred hhhcCCcCHHHHHHHHHH
Confidence 223447888888877663
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.59 E-value=6.5e-05 Score=62.17 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=43.9
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|+.+ ||++.++|++|+.++|..||+.++++... +.++.++|..|.|||
T Consensus 355 ~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s 407 (489)
T 3hu3_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (489)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCc
Confidence 36666 99999999999999999999999987654 678999999999999
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=6e-06 Score=71.83 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=43.6
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
.|++| |||+.|+||+|+.++|.+|++.++++... +.+++.+|+.|+|||
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 683 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSC
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccC
Confidence 47788 99999999999999999999999987644 678899999999999
No 32
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.35 E-value=9.8e-06 Score=51.96 Aligned_cols=53 Identities=15% Similarity=0.030 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhch--hhhHHHHHHHccCcc----------e---EEecCCcccCHHHHHHHHHHH
Q 037509 21 EECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS----------A---GYESENCVIHPSLSYVIVDYK 73 (108)
Q Consensus 21 eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS----------a---ay~s~d~vLt~~~~~~~v~~~ 73 (108)
++|.+||+.++++... +.+++++|++|+||| | |.-.....+|.+.|...+...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 5799999999998754 789999999999999 1 222234568888888777654
No 33
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.76 E-value=0.00085 Score=51.06 Aligned_cols=46 Identities=7% Similarity=0.062 Sum_probs=38.7
Q ss_pred hhhhh--ccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHccCcce
Q 037509 3 IQLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGISA 52 (108)
Q Consensus 3 ~AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TEGfSa 52 (108)
.|++| |||..++ +|+.++|.+|++.++... +.+++.+++.|+|||.
T Consensus 170 ~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~--~~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 170 APLIRDGRMEKFYW--APTREDRIGVCTGIFRTD--NVPAEDVVKIVDNFPG 217 (293)
T ss_dssp CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG--CCCHHHHHHHHHHSCS
T ss_pred HHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC--CCCHHHHHHHhCCCCc
Confidence 46664 9999997 689999999999888744 5678999999999994
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.35 E-value=0.0073 Score=45.51 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=54.8
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc---------e-EEe--cCCcccCHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS---------A-GYE--SENCVIHPSLSY 67 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS---------a-ay~--s~d~vLt~~~~~ 67 (108)
.++.+|||..++|+.|+.+++..+++.++.+... +..++.++..+.|.. + .++ .+...+|.+.+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~ 248 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRAN 248 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHH
Confidence 5788999999999999999999999999986532 667888999888876 1 132 335678888887
Q ss_pred HHHHH
Q 037509 68 VIVDY 72 (108)
Q Consensus 68 ~~v~~ 72 (108)
.++..
T Consensus 249 ~~~~~ 253 (338)
T 3pfi_A 249 EALNS 253 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.05 E-value=0.015 Score=43.23 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=54.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEe--cCCcccCHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYE--SENCVIHPSLSY 67 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~--s~d~vLt~~~~~ 67 (108)
.++.+||+.+++|+.|+.+++..+++.++.+.. .+..++.++..+.|.. ..++ .+...+|.+.+.
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~ 232 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERAL 232 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 467899999999999999999999999987542 2667899999998887 1223 345678888877
Q ss_pred HHHHH
Q 037509 68 VIVDY 72 (108)
Q Consensus 68 ~~v~~ 72 (108)
.++..
T Consensus 233 ~~~~~ 237 (324)
T 1hqc_A 233 EALAA 237 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.94 E-value=0.011 Score=44.82 Aligned_cols=71 Identities=7% Similarity=-0.023 Sum_probs=56.4
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc-------------eEEecCCcccCHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS-------------AGYESENCVIHPSL 65 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS-------------aay~s~d~vLt~~~ 65 (108)
..++.+||.. ++|+.|+.+++..|++.++.+. +.+..++.+++.+.|.+ .|+..+...+|.+.
T Consensus 244 ~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~ 322 (368)
T 3uk6_A 244 PIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDD 322 (368)
T ss_dssp CHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred CHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 3688999977 7999999999999999998763 22678899999999544 23344567899999
Q ss_pred HHHHHHHH
Q 037509 66 SYVIVDYK 73 (108)
Q Consensus 66 ~~~~v~~~ 73 (108)
+.+++...
T Consensus 323 v~~a~~~~ 330 (368)
T 3uk6_A 323 IKRVYSLF 330 (368)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988753
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.80 E-value=0.005 Score=53.54 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=42.7
Q ss_pred hhhh--ccceEEecCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCcc
Q 037509 4 QLSH--HNVELLEFPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGIS 51 (108)
Q Consensus 4 AV~~--RfDe~Ief~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGfS 51 (108)
|+.+ |||+.+++++|+.++|.+|++.+++++.. +.++.++|..|.||+
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCC
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcc
Confidence 4444 99999999999999999999999998754 668999999999999
No 38
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.79 E-value=0.0066 Score=42.49 Aligned_cols=68 Identities=6% Similarity=-0.112 Sum_probs=50.0
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEe-cCCcccCHHHH
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYE-SENCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~-s~d~vLt~~~~ 66 (108)
.++.+|++ ..++|+.|+.+++.++++.++++.- .+..++.+++.+.|-- ++|+ .+...+|.+.+
T Consensus 157 ~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~~v 236 (242)
T 3bos_A 157 PDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFV 236 (242)
T ss_dssp HHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred hhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 56788887 9999999999999999999997542 2667888888887733 2333 12345777777
Q ss_pred HHHH
Q 037509 67 YVIV 70 (108)
Q Consensus 67 ~~~v 70 (108)
.+++
T Consensus 237 ~~~l 240 (242)
T 3bos_A 237 KEML 240 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.63 E-value=0.03 Score=38.02 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=51.0
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYV 68 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~ 68 (108)
..++.+|+. .++|+.|+.++..++++.++.+.- .+..++.+++.+.|-- +.++ ..+|.+.+++
T Consensus 146 ~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~---~~I~~~~v~~ 221 (226)
T 2chg_A 146 IEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG---EVVDADTIYQ 221 (226)
T ss_dssp CHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SCBCHHHHHH
T ss_pred CHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC---ceecHHHHHH
Confidence 356788998 899999999999999999887542 2667888998888865 2222 5788888887
Q ss_pred HHH
Q 037509 69 IVD 71 (108)
Q Consensus 69 ~v~ 71 (108)
++.
T Consensus 222 ~~~ 224 (226)
T 2chg_A 222 ITA 224 (226)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.53 E-value=0.036 Score=41.76 Aligned_cols=31 Identities=6% Similarity=0.034 Sum_probs=28.4
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDK 33 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k 33 (108)
.|+.+||+-.++|+.|+.++|.+||+..+..
T Consensus 170 ~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 170 EAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 6889999999999999999999999998764
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.88 E-value=0.052 Score=37.05 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=49.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++.+|+ ..++|+.|+.++..++++.++.+.. .+..++.+++.|.|.- .+++ .+.+|.+.++++
T Consensus 171 ~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~--~~~i~~~~v~~~ 247 (250)
T 1njg_A 171 VTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAM 247 (250)
T ss_dssp HHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT--TSSBCHHHHHHH
T ss_pred HHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--CceecHHHHHHH
Confidence 4566775 6899999999999999999997532 2667889999999965 2333 347888887765
Q ss_pred H
Q 037509 70 V 70 (108)
Q Consensus 70 v 70 (108)
+
T Consensus 248 ~ 248 (250)
T 1njg_A 248 L 248 (250)
T ss_dssp S
T ss_pred h
Confidence 4
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.81 E-value=0.036 Score=40.96 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=36.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKI 47 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~T 47 (108)
.++.+||+..++|+.|+.+++..|++.++++... +..++.++..+
T Consensus 189 ~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~ 236 (309)
T 3syl_A 189 PGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYI 236 (309)
T ss_dssp TTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999986532 45556666554
No 43
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.44 E-value=0.08 Score=40.59 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=56.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEe--cCCcccCHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYE--SENCVIHPSLSY 67 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~--s~d~vLt~~~~~ 67 (108)
.++.+||.-.+.|+.|+.++..+||+...+... .+..+..+|.++.|.. ..|+ .+++.+|.+.+.
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~ 244 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVL 244 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 467899998999999999999999999887542 1667899999999987 1233 456789999998
Q ss_pred HHHHHH
Q 037509 68 VIVDYK 73 (108)
Q Consensus 68 ~~v~~~ 73 (108)
++++..
T Consensus 245 ~al~~~ 250 (334)
T 1in4_A 245 KTMEVL 250 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888753
No 44
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.24 E-value=0.17 Score=38.08 Aligned_cols=72 Identities=17% Similarity=-0.014 Sum_probs=54.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhh----h-chhhhHHHHHHHcc---Ccc---------e-EEecCCcccCHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDK----Y-TADDTLMEAAAKIE---GIS---------A-GYESENCVIHPS 64 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k----~-~~d~~l~elA~~TE---GfS---------a-ay~s~d~vLt~~ 64 (108)
.++.+||...++|+.|+.++..+|++.++++ . +.+..++.+++.+. |-- + .++.+...+|.+
T Consensus 182 ~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~ 261 (384)
T 2qby_B 182 PRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKE 261 (384)
T ss_dssp HHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHH
T ss_pred HHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHH
Confidence 4678899889999999999999999999874 1 22667888999988 432 1 122244689999
Q ss_pred HHHHHHHHHH
Q 037509 65 LSYVIVDYKV 74 (108)
Q Consensus 65 ~~~~~v~~~v 74 (108)
.+..+++...
T Consensus 262 ~v~~~~~~~~ 271 (384)
T 2qby_B 262 HVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888776654
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.21 E-value=0.045 Score=41.01 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=43.9
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhch----------h-hhHHHHHHHccCcc-------eEEecCCcccCH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA----------D-DTLMEAAAKIEGIS-------AGYESENCVIHP 63 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~----------d-~~l~elA~~TEGfS-------aay~s~d~vLt~ 63 (108)
..++.+|+. +++|+.|+.++|.+|++.+++.... + ..++.+++.+.|-- -.++ ..+.+|.
T Consensus 150 ~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~ 227 (324)
T 3u61_B 150 IKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDA 227 (324)
T ss_dssp CTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC
T ss_pred CHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCH
Confidence 457889995 7999999999999888777654311 4 67888999988865 1111 4567888
Q ss_pred HHHHHHHHH
Q 037509 64 SLSYVIVDY 72 (108)
Q Consensus 64 ~~~~~~v~~ 72 (108)
+.+..++..
T Consensus 228 ~~v~~~~~~ 236 (324)
T 3u61_B 228 GILSLVTND 236 (324)
T ss_dssp ---------
T ss_pred HHHHHHhCC
Confidence 877766544
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.03 E-value=0.21 Score=37.22 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=24.6
Q ss_pred hhhhhhccceEEecCCC-CHHHHHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLP-GKEECFKLLKLY 30 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LP-d~eeR~~ILkly 30 (108)
..|+.+||+..++++.| +.++|..|++..
T Consensus 202 ~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 202 RPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp CHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred CHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999 678888999773
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.71 E-value=0.094 Score=42.44 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=41.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+||. .|.|+.|+.+++..||+.++.+|.. +..+..++..+.+|.
T Consensus 311 ~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 311 AALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp SHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 57899998 5999999999999999999887532 677888998888876
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.56 E-value=0.087 Score=42.36 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=54.5
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecC-CcccCHHHH
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESE-NCVIHPSLS 66 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~-d~vLt~~~~ 66 (108)
.++..||+ .+++|+.|+.++|..||+..++... .+..++.||..+.|-- .+|+.. ...+|.+++
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 57788997 8999999999999999999987532 2566888999988754 344432 336898888
Q ss_pred HHHHHHHH
Q 037509 67 YVIVDYKV 74 (108)
Q Consensus 67 ~~~v~~~v 74 (108)
.+++...+
T Consensus 326 ~~~l~~~~ 333 (440)
T 2z4s_A 326 ILLLKDFI 333 (440)
T ss_dssp HHHTSTTT
T ss_pred HHHHHHHh
Confidence 88776544
No 49
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.28 E-value=0.11 Score=44.05 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=38.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+|| ..|+|+.|+.+++..||+.+.+++.. +..+..++..+.+|-
T Consensus 311 ~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 311 AALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp SHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred HHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 5889999 56999999999999999988877522 667788888777663
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.16 E-value=0.39 Score=35.78 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=54.2
Q ss_pred hhhhhccce-EEecCCCCHHHHHHHHHHHHhhh-----chhhhHHHHHHHcc---Ccc---------e---EEecCCccc
Q 037509 3 IQLSHHNVE-LLEFPLPGKEECFKLLKLYLDKY-----TADDTLMEAAAKIE---GIS---------A---GYESENCVI 61 (108)
Q Consensus 3 ~AV~~RfDe-~Ief~LPd~eeR~~ILklyl~k~-----~~d~~l~elA~~TE---GfS---------a---ay~s~d~vL 61 (108)
.++.+|+.. .++|+.|+.++...|++..+++. ..+..++.+++.+. |.- + |...+...+
T Consensus 185 ~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i 264 (387)
T 2v1u_A 185 PRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERV 264 (387)
T ss_dssp HHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred HHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 467889975 99999999999999999998751 22567888888888 765 1 222245689
Q ss_pred CHHHHHHHHHHHH
Q 037509 62 HPSLSYVIVDYKV 74 (108)
Q Consensus 62 t~~~~~~~v~~~v 74 (108)
|.+.+..+++...
T Consensus 265 ~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 265 RREHVYSARAEIE 277 (387)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9998888776553
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.15 E-value=0.2 Score=36.53 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=25.2
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKL 29 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILkl 29 (108)
..++.+||+..++|+.|+.+++.+|++.
T Consensus 186 ~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 186 IPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 3578899999999999999999999983
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.86 E-value=0.12 Score=43.69 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=39.6
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+||+ .++|+.|+.++|..||+...+++.. +..+..++..+.||.
T Consensus 335 ~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i 389 (758)
T 1r6b_X 335 RALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_dssp TSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHC
T ss_pred HHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhc
Confidence 46789998 7999999999999999998876421 567888888888874
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.26 E-value=0.27 Score=36.10 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=29.2
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.++.+|||.++.|+.|+.+++..|++.+++++
T Consensus 201 ~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 201 PEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred HHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999865
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.11 E-value=0.21 Score=43.21 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch-------hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA-------DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~-------d~~l~elA~~TEGfS 51 (108)
.|+.+||+. ++|+.|+.+++..||+.+++++.. +..+..++..+.||.
T Consensus 318 ~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 318 PALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp TTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred HHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 578899996 999999999999999988876521 677888999888875
No 55
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.69 E-value=0.39 Score=35.67 Aligned_cols=69 Identities=10% Similarity=0.012 Sum_probs=51.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc----------eEEecCCc---ccCHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS----------AGYESENC---VIHPSL 65 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS----------aay~s~d~---vLt~~~ 65 (108)
+.++.+|+. .++|+.|+.++...+++..+.+. +.+..++.+++.+.|-- ++|+..++ .+|.+.
T Consensus 177 ~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~ 255 (353)
T 1sxj_D 177 IDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQ 255 (353)
T ss_dssp CHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHH
T ss_pred cchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHH
Confidence 467888997 89999999999999999988653 22677899999999865 23322221 688888
Q ss_pred HHHHHH
Q 037509 66 SYVIVD 71 (108)
Q Consensus 66 ~~~~v~ 71 (108)
+.+++.
T Consensus 256 v~~~~~ 261 (353)
T 1sxj_D 256 VEELAG 261 (353)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 776644
No 56
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.28 E-value=0.64 Score=34.76 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=48.2
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++..|+ ..++|+.|+.++...+++.++++.- .+..++.+++.+.|.- .+|+ .+.+|.+.+.++
T Consensus 164 ~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~--~~~i~~~~v~~~ 240 (373)
T 1jr3_A 164 VTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG--DGQVSTQAVSAM 240 (373)
T ss_dssp HHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT--TTCBCHHHHHHH
T ss_pred HHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc--CCcccHHHHHHH
Confidence 4677787 7899999999999999999997642 2556888999998865 2444 356787766554
No 57
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.23 E-value=0.51 Score=38.27 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=54.3
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc----------hhhhHHHHHHHccCcc----------eEEec----C
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT----------ADDTLMEAAAKIEGIS----------AGYES----E 57 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~----------~d~~l~elA~~TEGfS----------aay~s----~ 57 (108)
..|+.+|+. ++.|+.|+.++...+++.++++.. .+..++.++..+.|-- +.++. +
T Consensus 150 ~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~ 228 (447)
T 3pvs_A 150 NSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSG 228 (447)
T ss_dssp CHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTS
T ss_pred CHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCC
Confidence 357889987 788999999999999999998621 1667889999988866 34443 3
Q ss_pred CcccCHHHHHHHHHH
Q 037509 58 NCVIHPSLSYVIVDY 72 (108)
Q Consensus 58 d~vLt~~~~~~~v~~ 72 (108)
...+|.+.+.++++.
T Consensus 229 ~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 229 KRVLKPELLTEIAGE 243 (447)
T ss_dssp CEECCHHHHHHHHTC
T ss_pred CCccCHHHHHHHHhh
Confidence 358999999988764
No 58
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.69 E-value=0.26 Score=35.99 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=32.5
Q ss_pred hhhhccceEEecCCCCHHHHHHHHHHHHhhh-chhhhHHHHHHHccCcc
Q 037509 4 QLSHHNVELLEFPLPGKEECFKLLKLYLDKY-TADDTLMEAAAKIEGIS 51 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~-~~d~~l~elA~~TEGfS 51 (108)
++.+||+..++|| +..+|.+|.+...... ..+..+..+|+.++||+
T Consensus 184 ~l~~rf~~~i~~p--~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 184 EMLNAFSTTIHVP--NIATGEQLLEALELLGNFKDKERTTIAQQVKGKK 230 (272)
T ss_dssp TCTTTSSEEEECC--CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTSE
T ss_pred hhhcccceEEcCC--CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCC
Confidence 4688999888774 4545555555554432 23778999999999987
No 59
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.07 E-value=0.52 Score=38.95 Aligned_cols=29 Identities=14% Similarity=-0.006 Sum_probs=26.3
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLD 32 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~ 32 (108)
.|+++||+ +|+|+.|+.++|..|++.|+.
T Consensus 239 ~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~ 267 (543)
T 3m6a_A 239 GPLRDRME-IINIAGYTEIEKLEIVKDHLL 267 (543)
T ss_dssp HHHHHHEE-EEECCCCCHHHHHHHHHHTHH
T ss_pred HHHHhhcc-eeeeCCCCHHHHHHHHHHHHH
Confidence 58899995 899999999999999999984
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.17 E-value=1.2 Score=32.36 Aligned_cols=65 Identities=20% Similarity=0.102 Sum_probs=47.2
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc---------eEEecCCcccCHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS---------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS---------aay~s~d~vLt~~~~~~~ 69 (108)
..++..|+. .++|+.|+.++...+++.++++.- .+..++.++..+.|-- ++.. .+.+|.+.+..+
T Consensus 146 ~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~ 222 (319)
T 2chq_A 146 IEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQI 222 (319)
T ss_dssp CHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHH
T ss_pred chHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHH
Confidence 457788986 899999999999999999987542 2667888888888754 2221 346776665543
No 61
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.99 E-value=1.3 Score=32.26 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=49.9
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc---------eEEecCCcccCHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS---------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS---------aay~s~d~vLt~~~~~~~ 69 (108)
+.++..|+. .++|+.|+.++..++++.++++.- .+..++.+++.+.|-- .+++ .+.+|.+.+.++
T Consensus 151 ~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~--~~~i~~~~v~~~ 227 (323)
T 1sxj_B 151 IEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG--HGLVNADNVFKI 227 (323)
T ss_dssp CHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HSSBCHHHHHHH
T ss_pred hhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCcCHHHHHHH
Confidence 356778886 899999999999999999887532 2667888999998866 2332 246787777666
Q ss_pred HH
Q 037509 70 VD 71 (108)
Q Consensus 70 v~ 71 (108)
+.
T Consensus 228 ~~ 229 (323)
T 1sxj_B 228 VD 229 (323)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.19 E-value=3.5 Score=30.37 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=51.7
Q ss_pred hhhhhccc-eEEecCCCCHHHHHHHHHHHHhhh-----chhhhHHHHHHHcc---Ccc---------e---EEecCCccc
Q 037509 3 IQLSHHNV-ELLEFPLPGKEECFKLLKLYLDKY-----TADDTLMEAAAKIE---GIS---------A---GYESENCVI 61 (108)
Q Consensus 3 ~AV~~RfD-e~Ief~LPd~eeR~~ILklyl~k~-----~~d~~l~elA~~TE---GfS---------a---ay~s~d~vL 61 (108)
.++.+|+. +.++|+.|+.++..++++.++.+. +.+..++.++..+. |.- + +...+...+
T Consensus 181 ~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i 260 (386)
T 2qby_A 181 PRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKV 260 (386)
T ss_dssp THHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 35677886 599999999999999999988742 12566778888887 765 1 111234578
Q ss_pred CHHHHHHHHHHHH
Q 037509 62 HPSLSYVIVDYKV 74 (108)
Q Consensus 62 t~~~~~~~v~~~v 74 (108)
|.+.+..++....
T Consensus 261 ~~~~v~~a~~~~~ 273 (386)
T 2qby_A 261 KEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9988887766543
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.82 E-value=1.6 Score=32.53 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=40.1
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh---ch-hhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TA-DDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~-d~~l~elA~~TEGfS 51 (108)
+.++.+|+ ..++|+.|+.++..++|+..+++. +. +..++.+|+.+.|--
T Consensus 178 ~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~ 230 (354)
T 1sxj_E 178 IAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNL 230 (354)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCH
T ss_pred HHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCH
Confidence 45788899 889999999999999999988754 22 456888999988865
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=84.34 E-value=1.4 Score=32.91 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=38.0
Q ss_pred hhhhhccc--eEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc
Q 037509 3 IQLSHHNV--ELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS 51 (108)
Q Consensus 3 ~AV~~RfD--e~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS 51 (108)
.++.+||+ ..++|+. +.++|..|++.++.+... +..++.+|..+ |--
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCH
Confidence 56788997 7889998 999999999999985422 66788899988 644
No 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.23 E-value=1.6 Score=32.58 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=50.3
Q ss_pred hhhhhccce-EEecCCCCHHHHHHHHHHHHhh-----hchhhhHHHHHHHc---------cCcc------------eEEe
Q 037509 3 IQLSHHNVE-LLEFPLPGKEECFKLLKLYLDK-----YTADDTLMEAAAKI---------EGIS------------AGYE 55 (108)
Q Consensus 3 ~AV~~RfDe-~Ief~LPd~eeR~~ILklyl~k-----~~~d~~l~elA~~T---------EGfS------------aay~ 55 (108)
..+.+|+.. .++|+.|+.++...+++..+.. .+.+..++.++..+ .|.- .|..
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 345678775 8999999999999999999875 12367889999999 5653 1222
Q ss_pred cCCcccCHHHHHHHHHH
Q 037509 56 SENCVIHPSLSYVIVDY 72 (108)
Q Consensus 56 s~d~vLt~~~~~~~v~~ 72 (108)
.+...+|.+.+..++..
T Consensus 257 ~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 257 NGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp TTCSSCCHHHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHH
Confidence 24457888777766543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.92 E-value=0.96 Score=38.15 Aligned_cols=32 Identities=3% Similarity=0.116 Sum_probs=29.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.++++|||.+|.|+.|+.+++.+|++.+++++
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999854
No 67
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=81.76 E-value=2.7 Score=30.55 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=38.9
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhc---hhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYT---ADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~---~d~~l~elA~~TEGfS 51 (108)
+.++..|+. .++|+.|+.++...+++..+++.- .+..++.++..+.|--
T Consensus 154 ~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 205 (327)
T 1iqp_A 154 IEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 205 (327)
T ss_dssp CHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCH
T ss_pred CHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCH
Confidence 356778887 789999999999999999887542 2667888888888854
No 68
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.18 E-value=2 Score=32.73 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=24.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKL 29 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILkl 29 (108)
.++.+|||.++.|+.|+.+++.+|+.+
T Consensus 241 ~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 241 PEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 467899999999999999999999998
No 69
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.81 E-value=3.1 Score=33.17 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=54.0
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHc-cCcc------------eEEecCCcccCHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKI-EGIS------------AGYESENCVIHPSL 65 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~T-EGfS------------aay~s~d~vLt~~~ 65 (108)
...+.+|+-. +.|+.|+.++..++|+...+.. +.+..+..+|..+ +|-- .|+..+.+.+|++.
T Consensus 351 ~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~ 429 (456)
T 2c9o_A 351 PLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEH 429 (456)
T ss_dssp CHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHH
T ss_pred ChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHH
Confidence 3568899977 5999999999999999887632 2266778888888 7733 25555778999999
Q ss_pred HHHHHHHH
Q 037509 66 SYVIVDYK 73 (108)
Q Consensus 66 ~~~~v~~~ 73 (108)
+.+++...
T Consensus 430 v~~~~~~~ 437 (456)
T 2c9o_A 430 VEEISELF 437 (456)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99887653
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.68 E-value=1.5 Score=37.15 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=27.1
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.++.+|||.+|.|+.|+.+++..|++.+++++
T Consensus 647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 647 PEFINRIDEIIVFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp HHHHTTSSEEEECC--CHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCeEEecCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999864
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.99 E-value=4 Score=33.08 Aligned_cols=67 Identities=9% Similarity=-0.047 Sum_probs=48.4
Q ss_pred hhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc-------eEEecCCcccCHHHHHHHHHH
Q 037509 6 SHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS-------AGYESENCVIHPSLSYVIVDY 72 (108)
Q Consensus 6 ~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS-------aay~s~d~vLt~~~~~~~v~~ 72 (108)
++|+...++|+.|+.+++.++|+..+.+. +.+..++.||+.+.|=- ...+.....+|.+.+.+++..
T Consensus 197 l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 197 FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEISKA 273 (516)
T ss_dssp GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHH
T ss_pred hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Confidence 35667789999999999999998887653 22667899999998822 112234567888877776653
No 72
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=70.38 E-value=7.5 Score=29.42 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhhchhhhHHHHHHHccCcc
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTADDTLMEAAAKIEGIS 51 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~d~~l~elA~~TEGfS 51 (108)
+.+|..|. ..++|+.|+.++..++|+... .+.+..+..++..+.|--
T Consensus 152 ~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--~~~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 152 LATLRSRC-RLHYLAPPPEQYAVTWLSREV--TMSQDALLAALRLSAGSP 198 (334)
T ss_dssp CHHHHTTS-EEEECCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHTTTCH
T ss_pred cHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHcCCCH
Confidence 56788898 479999999999999888775 122556778888887755
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.80 E-value=2.7 Score=34.79 Aligned_cols=30 Identities=13% Similarity=-0.064 Sum_probs=26.1
Q ss_pred hhhhhhccceEEecCCCCH-HHHHHHHHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGK-EECFKLLKLYL 31 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~-eeR~~ILklyl 31 (108)
+.|+++||+-.+++|.|+. ++|..|++...
T Consensus 166 ~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 166 LEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp THHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 3599999999999999998 78999998754
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=67.90 E-value=11 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=27.9
Q ss_pred hhhhhccc-eEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNV-ELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfD-e~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.++.+|+. ++|+|+.++.+|-..||+..++..
T Consensus 182 ~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 182 IMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp TCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 35778997 799999999999999999999753
No 75
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.81 E-value=0.062 Score=43.13 Aligned_cols=39 Identities=18% Similarity=0.057 Sum_probs=25.4
Q ss_pred hhccce--EEecCCCC--HHHHHHHHHHHHhhhchhhhHHHHHHHccC
Q 037509 6 SHHNVE--LLEFPLPG--KEECFKLLKLYLDKYTADDTLMEAAAKIEG 49 (108)
Q Consensus 6 ~~RfDe--~Ief~LPd--~eeR~~ILklyl~k~~~d~~l~elA~~TEG 49 (108)
.+|||. .+++|+|+ .++|.+|++.+. ..+++.+|.+|+|
T Consensus 210 ~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-----~~dl~~~a~~t~g 252 (456)
T 2c9o_A 210 ATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-----LHDLDVANARPQG 252 (456)
T ss_dssp CCTTSCSSSSEECCCCSCSEEEEEEEEEEE-----HHHHHHTC-----
T ss_pred CcccCcceeEecCCCchhHHHHHHHHHHHH-----HHHHHHHHHhCCC
Confidence 378998 77888885 478888876544 2478999999998
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.51 E-value=20 Score=26.81 Aligned_cols=70 Identities=14% Similarity=0.008 Sum_probs=48.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh-----chhhhHHHHHHHcc------Ccc---------e---EEecCCc
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY-----TADDTLMEAAAKIE------GIS---------A---GYESENC 59 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~-----~~d~~l~elA~~TE------GfS---------a---ay~s~d~ 59 (108)
..+.+|+...++|+.++.++..++++..+... ..+..+..+++.|. |.- + |...+..
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~ 279 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRD 279 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 34567787779999999999999998887632 22567889999999 866 1 2222334
Q ss_pred ccCHHHHHHHHHH
Q 037509 60 VIHPSLSYVIVDY 72 (108)
Q Consensus 60 vLt~~~~~~~v~~ 72 (108)
.+|.+.+..++..
T Consensus 280 ~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 280 SLSEDLVRKAVSE 292 (412)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 6777766655543
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=62.30 E-value=1.6 Score=35.89 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=0.0
Q ss_pred hccceEEecCCCCHH-HHHHHH
Q 037509 7 HHNVELLEFPLPGKE-ECFKLL 27 (108)
Q Consensus 7 ~RfDe~Ief~LPd~e-eR~~IL 27 (108)
+|||+.|++++|+.. .|..|+
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------
T ss_pred CCcceEEEEcCCCCccchhhhh
Confidence 399999999999998 787775
No 78
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=61.57 E-value=13 Score=27.81 Aligned_cols=69 Identities=9% Similarity=-0.039 Sum_probs=49.7
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhhch---hhhHHHHHHHccCcc----------eEEecCCcccCHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKYTA---DDTLMEAAAKIEGIS----------AGYESENCVIHPSLSYVI 69 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~~~---d~~l~elA~~TEGfS----------aay~s~d~vLt~~~~~~~ 69 (108)
.++..|- .+++|..|+.++..+.++..+++.-. +..++.++..++|=- +.|+ +++.+|.+.+.++
T Consensus 128 ~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~-~~~~It~e~V~~~ 205 (343)
T 1jr3_D 128 TALANRS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLW-PDGKLTLPRVEQA 205 (343)
T ss_dssp HHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHC-TTCEECHHHHHHH
T ss_pred HHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCCCCHHHHHHH
Confidence 3445554 57899999999999999988876422 567888888888733 3454 4678999988777
Q ss_pred HHHH
Q 037509 70 VDYK 73 (108)
Q Consensus 70 v~~~ 73 (108)
+...
T Consensus 206 ~~~~ 209 (343)
T 1jr3_D 206 VNDA 209 (343)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 6543
No 79
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.57 E-value=26 Score=26.17 Aligned_cols=68 Identities=10% Similarity=-0.051 Sum_probs=44.8
Q ss_pred hhhhhhccceEEecCCCCHHHHHHHHHHHHhhh---chhhhHHHHHHHccCcc----------eEEecCC--cccCHHHH
Q 037509 2 LIQLSHHNVELLEFPLPGKEECFKLLKLYLDKY---TADDTLMEAAAKIEGIS----------AGYESEN--CVIHPSLS 66 (108)
Q Consensus 2 ~~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~---~~d~~l~elA~~TEGfS----------aay~s~d--~vLt~~~~ 66 (108)
+.++..|+. .+.|+-|+.++..+.++..+++. +.+..+..++..+.|-- +.++... ..+|.+.+
T Consensus 154 ~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v 232 (340)
T 1sxj_C 154 TPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 232 (340)
T ss_dssp CHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHH
T ss_pred chhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHH
Confidence 456778886 78888888888888888887532 22556778888887754 2222211 25787776
Q ss_pred HHHH
Q 037509 67 YVIV 70 (108)
Q Consensus 67 ~~~v 70 (108)
.+++
T Consensus 233 ~~~~ 236 (340)
T 1sxj_C 233 YECC 236 (340)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.29 E-value=10 Score=32.70 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.5
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.++..|||.++.|+.|+.++...|++.+++++
T Consensus 742 ~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 742 PEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp HHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 35779999999999999999999999999854
No 81
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=50.46 E-value=15 Score=36.62 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=27.7
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHHHHhhh
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILklyl~k~ 34 (108)
.|.+||| .+++++.|+.+++.+|+..+++.+
T Consensus 1404 ~rllRrf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1404 ERFTRHA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp HHHHTTE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred hhhhhee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4788999 899999999999999999998754
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.48 E-value=16 Score=30.45 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.3
Q ss_pred hhhhhccc-eEEecCCCCHHHHHHHHHHHHhh
Q 037509 3 IQLSHHNV-ELLEFPLPGKEECFKLLKLYLDK 33 (108)
Q Consensus 3 ~AV~~RfD-e~Ief~LPd~eeR~~ILklyl~k 33 (108)
.|+++||| -.+..+.|+.+ ...|.+..++.
T Consensus 462 ~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 462 PTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred HHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 58899999 46777889988 88888887764
No 83
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.09 E-value=34 Score=21.74 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.2
Q ss_pred ecCCCCHHHHHHHHHHHHhhh--chhhhHHHHHHHc
Q 037509 14 EFPLPGKEECFKLLKLYLDKY--TADDTLMEAAAKI 47 (108)
Q Consensus 14 ef~LPd~eeR~~ILklyl~k~--~~d~~l~elA~~T 47 (108)
.-+.|..++...+|+.||..- +....+..||..+
T Consensus 7 ~~~~~~~k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l 42 (71)
T 2da7_A 7 GSPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAV 42 (71)
T ss_dssp CCCCCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 346788889999999999864 3367788888765
No 84
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=34.88 E-value=51 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=23.9
Q ss_pred hhhhhccceEEecCCCCHHHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLLKL 29 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~ILkl 29 (108)
.++..|++.++.|+-++.++..+|+..
T Consensus 258 p~l~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 258 PELIGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred hHHhcCCCceeeccCCCHHHHHHHHhh
Confidence 467899999999999999999999873
No 85
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=32.93 E-value=22 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=16.5
Q ss_pred EEecCCCCHHHHHHHHHHHH
Q 037509 12 LLEFPLPGKEECFKLLKLYL 31 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILklyl 31 (108)
-|.-.+|..+||.+|+.-+-
T Consensus 62 Gi~P~~P~~~eR~~I~~~~~ 81 (85)
T 2lqt_A 62 GVKPFMPTAAERDEILRAVG 81 (85)
T ss_dssp CCSCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHhc
Confidence 35668999999999998654
No 86
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=27.05 E-value=16 Score=25.60 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.9
Q ss_pred hccceEEecCCCCHHHHHHHHHHHH
Q 037509 7 HHNVELLEFPLPGKEECFKLLKLYL 31 (108)
Q Consensus 7 ~RfDe~Ief~LPd~eeR~~ILklyl 31 (108)
+-|+..|.+++|+.|-|..|.++-=
T Consensus 32 ~~~~~~IRl~iPTEERRkeLvK~ak 56 (123)
T 3lhp_S 32 DKFKAAVRKVFPTEERIKDWLKIVR 56 (123)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred hcCCCeEEeeCCCHHHHHHHHHHHH
Confidence 3457789999996666666665543
No 87
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=25.76 E-value=70 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=23.0
Q ss_pred hhhhhccceEEecCCCCHHHHHHHH
Q 037509 3 IQLSHHNVELLEFPLPGKEECFKLL 27 (108)
Q Consensus 3 ~AV~~RfDe~Ief~LPd~eeR~~IL 27 (108)
....+||+-+++|+-.+.++-.+|+
T Consensus 321 pel~~R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 321 PELQGRLPIRVELTALSAADFERIL 345 (444)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred hHHhcccceeeeCCCCCHHHHHHHH
Confidence 4578999999999999999999998
No 88
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.42 E-value=58 Score=20.59 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHHHhhh--chhhhHHHHHHHcc
Q 037509 25 KLLKLYLDKY--TADDTLMEAAAKIE 48 (108)
Q Consensus 25 ~ILklyl~k~--~~d~~l~elA~~TE 48 (108)
++|+.|+.+. ..+.|++.|+.+|.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~ksk 44 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASR 44 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTT
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhC
Confidence 5788888865 33889999999874
No 89
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=22.88 E-value=50 Score=24.53 Aligned_cols=19 Identities=32% Similarity=0.495 Sum_probs=15.8
Q ss_pred EEecCCCCHHHHHHHHHHH
Q 037509 12 LLEFPLPGKEECFKLLKLY 30 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILkly 30 (108)
-+.+|+|..+|..+|....
T Consensus 160 ~~~i~lPpl~EQ~~I~~~l 178 (425)
T 1yf2_A 160 SFKIPLPPLEEQKQIAKIL 178 (425)
T ss_dssp TCEECCCCHHHHHHHHHHH
T ss_pred cCccCCCCHHHHHHHHHHH
Confidence 3679999999999998753
No 90
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=22.82 E-value=17 Score=27.23 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=19.7
Q ss_pred hhhhccceEEecCCCCHHHHHH----HHHHHHhh
Q 037509 4 QLSHHNVELLEFPLPGKEECFK----LLKLYLDK 33 (108)
Q Consensus 4 AV~~RfDe~Ief~LPd~eeR~~----ILklyl~k 33 (108)
++..||+ .+.+.+|...+|.. |++.++++
T Consensus 160 ~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~ 192 (304)
T 1ojl_A 160 DLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRR 192 (304)
T ss_dssp HHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHH
T ss_pred HHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHH
Confidence 3555666 78888999887755 55555554
No 91
>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A
Probab=22.67 E-value=98 Score=20.77 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.5
Q ss_pred cCCCCHHHHHHHHHHHHhhhch--hhhHHHHHHHccCc
Q 037509 15 FPLPGKEECFKLLKLYLDKYTA--DDTLMEAAAKIEGI 50 (108)
Q Consensus 15 f~LPd~eeR~~ILklyl~k~~~--d~~l~elA~~TEGf 50 (108)
.+|++.++|.+=|+-.|.+-.. +..++++-.+..|+
T Consensus 60 LDl~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkgl 97 (99)
T 1j2m_A 60 LELESEEERSRKIQGLLKSCTNPTENFVQELLVKLRGL 97 (99)
T ss_dssp HCCTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3689999999888877876432 78889999888885
No 92
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=22.45 E-value=32 Score=19.08 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=17.4
Q ss_pred hhhhccceEE-ecCCCCHHHHHHHHHHHHhhh
Q 037509 4 QLSHHNVELL-EFPLPGKEECFKLLKLYLDKY 34 (108)
Q Consensus 4 AV~~RfDe~I-ef~LPd~eeR~~ILklyl~k~ 34 (108)
||++.++... ..|||.. |+.|+..|
T Consensus 11 ~I~~~~~~~~~~LpLP~~------Lk~yL~ey 36 (40)
T 2jz3_A 11 TVNGHLDSYEKVTQLPGP------IREFLDQY 36 (40)
T ss_pred HHHHHcCCCcccCCCCHH------HHHHHHHC
Confidence 5677776665 6788854 77777765
No 93
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.02 E-value=61 Score=19.72 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=17.8
Q ss_pred EEecCCCCHHHHHHHHHHHHh
Q 037509 12 LLEFPLPGKEECFKLLKLYLD 32 (108)
Q Consensus 12 ~Ief~LPd~eeR~~ILklyl~ 32 (108)
--+.-||+..+|+.++..|.+
T Consensus 38 pRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 38 PDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp TTGGGSSCHHHHHHHHHHHHT
T ss_pred CCeeecCChHHHHHHHHHHhh
Confidence 346789999999999999875
Done!