BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037510
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 11/157 (7%)
Query: 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLI 335
H +EN+ R+ K++ E +D K G V EA+R+ +E + G++++
Sbjct: 4 HMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH 63
Query: 336 CNSLINGYCKLGQVCEAKR----------VLRCMGDWNLRPDSFSFNTLVDGYCRECDMT 385
N L+ C L + + + M + P+ +F + D
Sbjct: 64 YNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPE 122
Query: 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEA 422
AF + +M GI+P + +Y L G CR GD D+A
Sbjct: 123 MAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 53/124 (42%)
Query: 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSME 544
K G + EA +++D+ + G + Y L E+ L +I M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97
Query: 545 KEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLN 604
+ +VP+ + +A + D++ +M+ G+ P + +YG + G+C G +
Sbjct: 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157
Query: 605 KAFK 608
KA++
Sbjct: 158 KAYE 161
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 710 IFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769
IF +++ P+ T++ A D AF++ +M + P + +Y + G C
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 770 NSGELDRA 777
G+ D+A
Sbjct: 152 RKGDADKA 159
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC-KSGNVTDARRIFSALLLT 717
+MAS + N+ + ++ +S +L +C K G+V +A R++
Sbjct: 4 HMASPSENLSRKAKKKAIQQSPEALLKQKL--------DMCSKKGDVLEALRLYDEARRN 55
Query: 718 GFSPDNFTYSTLIH----GYAAVGD-----INEAFNLRDEMLKINLVPNIATYNSLVSGL 768
G + Y+ L++ AA ++ F++ +M+ +VPN AT+ +
Sbjct: 56 GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115
Query: 769 CNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805
+ + A + +++ G+ P + +Y + G+C+
Sbjct: 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 179 VYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV 238
+++QM+ +VP+ T + + E A D VK+M+ G + + +Y + G+
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC 151
Query: 239 SLGDLNGAKRV 249
GD + A V
Sbjct: 152 RKGDADKAYEV 162
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 11/160 (6%)
Query: 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLI 335
H +EN+ R+ K++ E +D K G V EA+R+ +E + G++++
Sbjct: 4 HXASPSENLSRKAKKKAIQQSPEALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYH 63
Query: 336 CNSLINGYCKLGQVCEAKR----------VLRCMGDWNLRPDSFSFNTLVDGYCRECDMT 385
N L+ C L + + + + P+ +F + D
Sbjct: 64 YNVLLY-VCSLAEAATESSPNPGLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPE 122
Query: 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHL 425
AF + GI+P + +Y L G CR GD D+A +
Sbjct: 123 XAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 546 EAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNK 605
+ +VP+ + +A + D + + + G+ P + +YG + G+C G +K
Sbjct: 99 DKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADK 158
Query: 606 AFK 608
A++
Sbjct: 159 AYE 161
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
Query: 375 VDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGD----------VDEALH 424
+D ++ D+ EA RL E R G++ S YN LL +C + + +
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLY-VCSLAEAATESSPNPGLSRGFD 91
Query: 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484
++ + V PNE + + K D A A G ++ + G C
Sbjct: 92 IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFC 151
Query: 485 KMGKMTEAQKI 495
+ G +A ++
Sbjct: 152 RKGDADKAYEV 162
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 301 YGVLIDGYCKVGKVDEAI----RVLNEMLKTG-LEMNLLICNSLINGYCKLGQVCEAKRV 355
YG L D + VG+ DEA R ++ + + LE L SL+N Y Q E
Sbjct: 12 YGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWL--RSLMNRYVNFQQATEDALR 69
Query: 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVT 405
C L D+ + +TL D Y R +E E+ R+G++ ++++
Sbjct: 70 FTCR-HLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILS 118
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 301 YGVLIDGYCKVGKVDEAI----RVLNEMLKTG-LEMNLLICNSLINGYCKLGQVCEAKRV 355
YG L D + VG+ DEA R ++ + + LE L SL+N Y Q E
Sbjct: 12 YGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWL--RSLMNRYVNFQQATEDALR 69
Query: 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVT 405
C L D+ + +TL D Y R +E E+ R+G++ ++++
Sbjct: 70 FTCR-HLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILS 118
>pdb|1EUM|A Chain A, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|B Chain B, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|C Chain C, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|D Chain D, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|E Chain E, Crystal Structure Of The E.Coli Ferritin Ecftna
pdb|1EUM|F Chain F, Crystal Structure Of The E.Coli Ferritin Ecftna
Length = 165
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNL-EEAFKIKNLMERR--EILPSME 544
+MT Q++FD + + G LP I T + Y + L +E +K + L+ ++ E+ +
Sbjct: 50 EMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAM 109
Query: 545 KEAIVPSIDMYNYLISVAFKSREL-TSLVDLLA 576
P+ + + +S + +L S++D L+
Sbjct: 110 TNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,646,264
Number of Sequences: 62578
Number of extensions: 912444
Number of successful extensions: 2706
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2674
Number of HSP's gapped (non-prelim): 28
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)