Query 037510
Match_columns 806
No_of_seqs 769 out of 4379
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 12:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.7E-83 5.8E-88 733.7 76.0 674 33-794 50-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.4E-79 7.4E-84 699.9 71.5 654 64-804 47-702 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.6E-70 5.6E-75 610.3 68.7 548 188-794 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-69 6.7E-74 601.7 70.1 547 154-759 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.2E-63 1.3E-67 551.9 51.4 476 155-656 85-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 9.1E-62 2E-66 542.6 55.1 475 260-791 85-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-40 9.3E-45 389.4 88.2 709 45-785 172-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-39 4.8E-44 383.3 87.8 727 45-805 138-883 (899)
9 PRK11447 cellulose synthase su 100.0 2.6E-29 5.6E-34 295.2 75.9 640 71-791 31-745 (1157)
10 PRK11447 cellulose synthase su 100.0 6.5E-29 1.4E-33 291.8 75.7 658 45-756 41-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.3E-25 1.6E-29 244.7 72.9 650 36-794 48-745 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.7E-24 3.6E-29 241.8 69.7 581 131-793 53-710 (987)
13 KOG2002 TPR-containing nuclear 99.9 8.2E-21 1.8E-25 197.4 61.5 663 69-800 42-758 (1018)
14 KOG2002 TPR-containing nuclear 99.9 1E-20 2.2E-25 196.7 59.8 599 138-790 146-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1.2E-23 2.5E-28 206.8 35.7 452 265-776 51-508 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 3.5E-23 7.7E-28 203.4 36.9 448 230-738 51-505 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 2E-18 4.4E-23 190.9 51.2 436 262-751 127-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-18 6.3E-23 189.6 51.8 442 227-722 127-574 (615)
19 PRK11788 tetratricopeptide rep 99.9 5.1E-20 1.1E-24 193.7 35.7 300 413-794 45-354 (389)
20 PRK11788 tetratricopeptide rep 99.9 6E-20 1.3E-24 193.1 34.7 303 129-439 42-354 (389)
21 PRK15174 Vi polysaccharide exp 99.9 3.4E-18 7.3E-23 187.9 43.8 359 343-751 15-380 (656)
22 PRK15174 Vi polysaccharide exp 99.9 1.4E-17 3E-22 183.2 45.8 355 335-751 44-402 (656)
23 KOG2076 RNA polymerase III tra 99.9 5.4E-15 1.2E-19 153.7 61.4 374 69-466 140-554 (895)
24 KOG2076 RNA polymerase III tra 99.9 1.7E-15 3.7E-20 157.3 57.0 626 120-786 135-848 (895)
25 PRK10049 pgaA outer membrane p 99.9 3.5E-17 7.6E-22 184.2 46.5 422 302-795 19-462 (765)
26 PRK10049 pgaA outer membrane p 99.8 7.9E-17 1.7E-21 181.3 47.8 426 260-764 13-466 (765)
27 KOG0495 HAT repeat protein [RN 99.8 4.5E-14 9.7E-19 141.0 58.8 581 135-786 264-879 (913)
28 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.7E-20 167.6 52.5 216 558-797 298-521 (822)
29 PRK14574 hmsH outer membrane p 99.8 5.2E-15 1.1E-19 162.7 55.1 451 201-724 43-518 (822)
30 KOG0495 HAT repeat protein [RN 99.8 4.1E-13 8.9E-18 134.3 62.3 599 81-758 264-884 (913)
31 KOG4422 Uncharacterized conser 99.8 8.3E-14 1.8E-18 132.1 43.8 326 156-534 115-459 (625)
32 KOG2003 TPR repeat-containing 99.8 1.6E-14 3.4E-19 137.8 38.7 486 228-781 202-716 (840)
33 KOG4422 Uncharacterized conser 99.8 1.4E-13 3E-18 130.7 42.3 317 132-469 125-464 (625)
34 KOG2003 TPR repeat-containing 99.7 5.2E-14 1.1E-18 134.3 35.4 486 123-637 202-709 (840)
35 KOG1915 Cell cycle control pro 99.7 8.5E-12 1.8E-16 120.3 46.8 455 275-785 86-583 (677)
36 KOG4318 Bicoid mRNA stability 99.7 8E-13 1.7E-17 136.9 38.9 558 148-785 16-623 (1088)
37 KOG1915 Cell cycle control pro 99.7 6.4E-11 1.4E-15 114.4 48.9 461 133-615 84-584 (677)
38 KOG4318 Bicoid mRNA stability 99.7 2.2E-11 4.7E-16 126.6 45.6 699 60-803 17-824 (1088)
39 KOG1173 Anaphase-promoting com 99.6 9.8E-12 2.1E-16 123.0 37.5 509 191-766 15-530 (611)
40 KOG2047 mRNA splicing factor [ 99.6 1.2E-08 2.5E-13 103.0 59.5 548 122-738 102-709 (835)
41 PRK10747 putative protoheme IX 99.6 3.8E-12 8.2E-17 132.1 34.5 251 484-786 129-389 (398)
42 PRK10747 putative protoheme IX 99.6 5.1E-12 1.1E-16 131.1 34.8 252 449-751 129-389 (398)
43 TIGR00540 hemY_coli hemY prote 99.6 4.5E-12 9.8E-17 132.4 34.5 290 450-785 96-397 (409)
44 KOG1155 Anaphase-promoting com 99.6 5.3E-11 1.1E-15 114.9 37.7 306 447-805 236-552 (559)
45 PF13429 TPR_15: Tetratricopep 99.6 8.1E-15 1.8E-19 145.4 12.6 260 479-785 14-275 (280)
46 TIGR00540 hemY_coli hemY prote 99.6 7.7E-12 1.7E-16 130.6 34.6 132 586-751 262-398 (409)
47 KOG1126 DNA-binding cell divis 99.6 2.8E-13 6.1E-18 136.8 21.7 285 452-792 333-623 (638)
48 KOG1126 DNA-binding cell divis 99.6 7.3E-13 1.6E-17 133.8 24.4 281 418-751 334-619 (638)
49 KOG1173 Anaphase-promoting com 99.6 2.3E-10 5.1E-15 113.5 40.9 291 330-631 241-531 (611)
50 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.1E-19 142.7 12.1 17 129-145 15-31 (280)
51 KOG2047 mRNA splicing factor [ 99.6 8.9E-09 1.9E-13 103.8 51.3 491 124-639 140-711 (835)
52 KOG1155 Anaphase-promoting com 99.6 3.9E-10 8.5E-15 109.0 40.0 363 260-649 162-534 (559)
53 KOG0985 Vesicle coat protein c 99.6 8.7E-09 1.9E-13 108.7 52.9 558 45-648 522-1220(1666)
54 KOG0547 Translocase of outer m 99.6 5E-11 1.1E-15 115.8 34.1 229 483-751 336-565 (606)
55 KOG4162 Predicted calmodulin-b 99.5 2.3E-09 5E-14 110.6 46.7 238 259-500 320-574 (799)
56 KOG0547 Translocase of outer m 99.5 1.3E-10 2.7E-15 113.1 34.2 226 379-614 337-564 (606)
57 KOG3785 Uncharacterized conser 99.5 2.3E-09 4.9E-14 100.0 40.8 450 204-726 34-497 (557)
58 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.5E-15 110.1 33.3 290 417-785 98-388 (400)
59 KOG4162 Predicted calmodulin-b 99.5 6.7E-09 1.5E-13 107.3 46.7 507 204-786 239-782 (799)
60 COG3071 HemY Uncharacterized e 99.5 2.3E-10 5E-15 109.0 33.2 270 486-805 97-373 (400)
61 KOG3785 Uncharacterized conser 99.5 3.6E-09 7.7E-14 98.7 39.0 458 129-656 29-495 (557)
62 COG2956 Predicted N-acetylgluc 99.5 1.5E-10 3.3E-15 106.6 29.4 251 275-531 48-305 (389)
63 COG2956 Predicted N-acetylgluc 99.5 1.2E-10 2.7E-15 107.1 28.1 286 451-786 48-346 (389)
64 KOG1156 N-terminal acetyltrans 99.5 8.9E-09 1.9E-13 104.2 43.5 457 275-786 20-510 (700)
65 KOG0985 Vesicle coat protein c 99.4 5.4E-07 1.2E-11 95.7 55.3 157 586-803 1103-1259(1666)
66 KOG1156 N-terminal acetyltrans 99.4 2.6E-08 5.6E-13 100.9 42.6 424 345-789 19-470 (700)
67 KOG2376 Signal recognition par 99.4 1.6E-08 3.5E-13 101.2 38.9 470 234-784 19-517 (652)
68 TIGR02521 type_IV_pilW type IV 99.4 2.6E-10 5.7E-15 110.7 25.8 202 550-786 29-231 (234)
69 KOG3617 WD40 and TPR repeat-co 99.4 1.3E-06 2.8E-11 91.0 51.0 555 67-752 756-1359(1416)
70 KOG1129 TPR repeat-containing 99.4 8.7E-11 1.9E-15 108.0 19.0 235 509-792 224-461 (478)
71 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.4E-14 112.7 28.4 218 558-802 247-500 (508)
72 KOG1127 TPR repeat-containing 99.3 3.1E-07 6.8E-12 97.7 46.4 643 108-799 478-1186(1238)
73 PF12569 NARP1: NMDA receptor- 99.3 8E-08 1.7E-12 100.6 41.8 292 270-580 12-333 (517)
74 KOG3616 Selective LIM binding 99.3 1.6E-06 3.5E-11 89.0 48.8 602 122-800 661-1367(1636)
75 PRK12370 invasion protein regu 99.3 2.5E-09 5.3E-14 116.4 31.0 217 136-362 318-535 (553)
76 KOG1129 TPR repeat-containing 99.3 5E-10 1.1E-14 103.1 21.0 231 125-362 226-458 (478)
77 PF13041 PPR_2: PPR repeat fam 99.3 6.4E-12 1.4E-16 86.0 6.2 50 756-805 1-50 (50)
78 KOG2376 Signal recognition par 99.3 7.7E-08 1.7E-12 96.5 36.8 115 688-805 376-504 (652)
79 KOG1840 Kinesin light chain [C 99.3 2.6E-09 5.7E-14 109.9 27.7 251 439-751 200-478 (508)
80 PRK12370 invasion protein regu 99.3 3.7E-09 8E-14 115.0 30.6 267 155-433 254-536 (553)
81 TIGR02521 type_IV_pilW type IV 99.3 2.1E-09 4.6E-14 104.3 25.8 197 157-358 31-228 (234)
82 KOG3617 WD40 and TPR repeat-co 99.3 1.1E-06 2.3E-11 91.5 45.1 249 131-430 737-994 (1416)
83 KOG1174 Anaphase-promoting com 99.3 2.1E-07 4.5E-12 89.1 37.1 59 691-751 441-499 (564)
84 PF12569 NARP1: NMDA receptor- 99.3 2.3E-07 5E-12 97.2 41.0 265 123-397 5-291 (517)
85 KOG1174 Anaphase-promoting com 99.3 1.8E-07 3.9E-12 89.6 35.9 370 121-503 96-501 (564)
86 KOG3616 Selective LIM binding 99.3 1.3E-07 2.7E-12 96.9 37.1 134 483-647 742-875 (1636)
87 KOG1127 TPR repeat-containing 99.2 5.4E-07 1.2E-11 96.0 39.4 186 206-396 472-658 (1238)
88 COG3063 PilF Tfp pilus assembl 99.2 1.5E-08 3.3E-13 89.4 23.6 210 554-800 37-247 (250)
89 PF13041 PPR_2: PPR repeat fam 99.2 5.6E-11 1.2E-15 81.3 6.1 49 721-769 1-49 (50)
90 KOG0548 Molecular co-chaperone 99.2 3E-07 6.5E-12 91.6 33.8 228 441-726 227-462 (539)
91 COG3063 PilF Tfp pilus assembl 99.1 1E-07 2.2E-12 84.3 24.5 194 198-395 41-234 (250)
92 PRK11189 lipoprotein NlpI; Pro 99.1 6.6E-08 1.4E-12 96.0 25.9 208 552-801 64-278 (296)
93 KOG0548 Molecular co-chaperone 99.0 2.4E-07 5.2E-12 92.3 27.0 415 235-751 10-454 (539)
94 KOG4340 Uncharacterized conser 99.0 7.6E-07 1.6E-11 81.6 27.0 316 124-463 12-335 (459)
95 KOG0624 dsRNA-activated protei 99.0 6.5E-06 1.4E-10 77.2 33.4 367 333-794 38-427 (504)
96 PRK11189 lipoprotein NlpI; Pro 99.0 4.1E-07 8.9E-12 90.4 27.6 94 265-361 67-160 (296)
97 KOG4340 Uncharacterized conser 99.0 4.1E-07 8.9E-12 83.2 24.0 353 264-649 12-373 (459)
98 cd05804 StaR_like StaR_like; a 99.0 2.8E-06 6E-11 88.2 34.4 200 123-327 7-215 (355)
99 KOG1128 Uncharacterized conser 98.9 2.2E-07 4.7E-12 95.9 23.2 221 504-786 394-615 (777)
100 cd05804 StaR_like StaR_like; a 98.9 5.5E-06 1.2E-10 86.0 34.2 200 157-361 6-214 (355)
101 KOG1125 TPR repeat-containing 98.9 2.1E-07 4.6E-12 93.5 21.2 221 559-785 292-525 (579)
102 PF04733 Coatomer_E: Coatomer 98.9 5.9E-08 1.3E-12 94.5 17.1 252 483-792 11-268 (290)
103 KOG1125 TPR repeat-containing 98.9 2.4E-07 5.3E-12 93.1 21.1 261 446-780 293-564 (579)
104 KOG0624 dsRNA-activated protei 98.9 1.5E-05 3.3E-10 74.8 30.9 207 559-794 162-375 (504)
105 PRK04841 transcriptional regul 98.9 1.7E-05 3.6E-10 93.7 40.3 380 339-753 347-761 (903)
106 PRK04841 transcriptional regul 98.8 1.6E-05 3.5E-10 93.9 36.9 90 414-503 664-761 (903)
107 PF04733 Coatomer_E: Coatomer 98.8 1.8E-07 3.9E-12 91.2 16.9 251 130-397 9-265 (290)
108 KOG2053 Mitochondrial inherita 98.8 0.00058 1.3E-08 73.1 48.4 224 134-363 21-256 (932)
109 PRK15359 type III secretion sy 98.7 5.6E-07 1.2E-11 78.2 14.8 103 690-798 26-130 (144)
110 PRK10370 formate-dependent nit 98.7 1.7E-06 3.7E-11 79.6 18.3 117 600-751 52-172 (198)
111 TIGR03302 OM_YfiO outer membra 98.7 2.7E-06 5.8E-11 82.1 19.9 170 586-787 32-232 (235)
112 PLN02789 farnesyltranstransfer 98.7 1.1E-05 2.3E-10 80.0 24.1 209 556-804 41-266 (320)
113 PLN02789 farnesyltranstransfer 98.7 2.8E-05 6.1E-10 77.0 26.8 226 518-794 47-307 (320)
114 KOG1914 mRNA cleavage and poly 98.6 0.00088 1.9E-08 67.5 42.0 166 553-749 367-536 (656)
115 PRK15179 Vi polysaccharide bio 98.6 5.9E-06 1.3E-10 90.4 22.8 132 619-786 83-216 (694)
116 PF12854 PPR_1: PPR repeat 98.6 4.7E-08 1E-12 59.6 3.4 32 753-784 2-33 (34)
117 KOG2053 Mitochondrial inherita 98.6 0.0017 3.8E-08 69.6 46.7 225 167-399 19-257 (932)
118 PRK10370 formate-dependent nit 98.6 8.5E-06 1.8E-10 75.0 19.9 159 594-802 23-186 (198)
119 KOG1070 rRNA processing protei 98.6 2E-05 4.2E-10 87.5 25.4 241 491-773 1443-1686(1710)
120 COG5010 TadD Flp pilus assembl 98.6 8.9E-06 1.9E-10 74.1 18.9 159 591-785 70-229 (257)
121 PRK15359 type III secretion sy 98.6 3E-06 6.5E-11 73.6 15.4 97 625-757 27-124 (144)
122 PF12854 PPR_1: PPR repeat 98.6 8.7E-08 1.9E-12 58.4 4.0 29 224-252 4-32 (34)
123 KOG1128 Uncharacterized conser 98.6 1.9E-05 4.2E-10 82.0 23.1 215 160-396 401-615 (777)
124 TIGR03302 OM_YfiO outer membra 98.5 1E-05 2.3E-10 78.0 19.8 185 549-752 30-232 (235)
125 KOG1070 rRNA processing protei 98.5 6.4E-05 1.4E-09 83.7 27.1 237 456-738 1443-1686(1710)
126 KOG3081 Vesicle coat complex C 98.5 7.3E-05 1.6E-09 68.1 22.6 247 483-786 18-270 (299)
127 KOG3060 Uncharacterized conser 98.5 0.00014 2.9E-09 65.9 23.1 189 565-791 25-222 (289)
128 PRK14720 transcript cleavage f 98.5 5.1E-05 1.1E-09 83.8 24.6 43 725-769 225-268 (906)
129 KOG1914 mRNA cleavage and poly 98.4 0.0028 6.1E-08 64.0 38.3 424 64-534 16-498 (656)
130 TIGR02552 LcrH_SycD type III s 98.4 6.7E-06 1.4E-10 71.3 13.5 110 687-801 16-126 (135)
131 COG5010 TadD Flp pilus assembl 98.4 5.8E-05 1.3E-09 69.0 19.4 159 196-359 70-228 (257)
132 KOG3081 Vesicle coat complex C 98.4 0.00022 4.8E-09 65.1 22.7 253 413-724 18-276 (299)
133 COG4783 Putative Zn-dependent 98.4 0.00014 2.9E-09 72.6 22.5 156 595-803 314-472 (484)
134 PRK15179 Vi polysaccharide bio 98.4 0.00015 3.2E-09 79.7 24.8 150 115-268 79-228 (694)
135 KOG3060 Uncharacterized conser 98.3 0.00036 7.9E-09 63.2 22.5 190 522-756 26-222 (289)
136 PRK14720 transcript cleavage f 98.3 0.0004 8.7E-09 77.0 27.3 146 69-220 32-177 (906)
137 TIGR02552 LcrH_SycD type III s 98.3 2.2E-05 4.8E-10 68.0 14.3 103 622-760 17-120 (135)
138 PRK15363 pathogenicity island 98.2 6.4E-05 1.4E-09 63.9 14.6 94 690-786 37-131 (157)
139 COG4783 Putative Zn-dependent 98.2 0.00052 1.1E-08 68.6 22.1 140 411-581 314-454 (484)
140 KOG0553 TPR repeat-containing 98.1 2.1E-05 4.5E-10 73.3 10.6 102 695-802 88-191 (304)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 74.0 16.4 122 591-750 173-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00016 3.5E-09 63.2 14.4 53 694-748 91-143 (145)
143 PF09976 TPR_21: Tetratricopep 98.1 0.00012 2.6E-09 64.0 13.5 128 625-784 15-144 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00015 3.3E-09 73.3 15.8 126 622-786 169-296 (395)
145 KOG0550 Molecular chaperone (D 98.0 0.00041 8.8E-09 67.5 17.2 285 446-786 57-349 (486)
146 KOG0553 TPR repeat-containing 98.0 4.7E-05 1E-09 71.0 10.6 98 630-763 89-187 (304)
147 TIGR00756 PPR pentatricopeptid 98.0 1.6E-05 3.5E-10 49.5 4.5 33 760-792 2-34 (35)
148 PLN03088 SGT1, suppressor of 98.0 0.00011 2.5E-09 74.7 13.2 104 694-803 8-113 (356)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 4E-09 60.6 12.5 98 690-793 4-109 (119)
150 PF07079 DUF1347: Protein of u 97.9 0.03 6.5E-07 55.8 44.5 207 509-763 299-530 (549)
151 cd00189 TPR Tetratricopeptide 97.9 0.00012 2.6E-09 58.8 10.6 94 690-786 2-96 (100)
152 PRK15363 pathogenicity island 97.9 0.00025 5.5E-09 60.3 11.2 96 622-751 35-131 (157)
153 TIGR00756 PPR pentatricopeptid 97.8 3.3E-05 7.1E-10 48.1 4.6 33 370-402 2-34 (35)
154 PF14938 SNAP: Soluble NSF att 97.8 0.0034 7.3E-08 62.0 21.0 27 690-716 157-183 (282)
155 PF12895 Apc3: Anaphase-promot 97.8 2.8E-05 6.1E-10 60.4 4.9 78 701-783 2-83 (84)
156 PF13812 PPR_3: Pentatricopept 97.8 3.4E-05 7.3E-10 47.6 4.2 33 759-791 2-34 (34)
157 CHL00033 ycf3 photosystem I as 97.8 0.00031 6.7E-09 63.3 12.2 98 622-750 35-140 (168)
158 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00057 1.2E-08 57.6 13.2 98 624-752 4-105 (119)
159 COG4700 Uncharacterized protei 97.8 0.0055 1.2E-07 52.9 17.9 136 584-751 86-221 (251)
160 PLN03088 SGT1, suppressor of 97.8 0.00045 9.7E-09 70.5 14.0 98 629-762 9-107 (356)
161 COG4235 Cytochrome c biogenesi 97.8 0.00087 1.9E-08 63.3 14.5 112 685-802 153-269 (287)
162 PRK10153 DNA-binding transcrip 97.8 0.0011 2.3E-08 70.7 17.0 71 687-761 419-489 (517)
163 COG4700 Uncharacterized protei 97.7 0.011 2.4E-07 51.1 18.7 131 619-784 86-219 (251)
164 PRK10153 DNA-binding transcrip 97.7 0.002 4.3E-08 68.7 18.2 89 704-796 400-489 (517)
165 PF12688 TPR_5: Tetratrico pep 97.7 0.0014 3.1E-08 53.9 13.3 109 691-805 4-118 (120)
166 PF13812 PPR_3: Pentatricopept 97.7 7.3E-05 1.6E-09 46.0 4.4 32 725-756 3-34 (34)
167 PF13414 TPR_11: TPR repeat; P 97.7 0.00015 3.2E-09 53.8 6.9 63 687-751 2-66 (69)
168 KOG0550 Molecular chaperone (D 97.7 0.015 3.4E-07 56.9 21.4 157 561-752 178-350 (486)
169 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 54.3 10.9 93 625-751 3-96 (100)
170 PF14938 SNAP: Soluble NSF att 97.6 0.024 5.3E-07 56.0 23.6 87 276-362 129-225 (282)
171 PRK02603 photosystem I assembl 97.6 0.0015 3.3E-08 59.0 13.9 48 689-738 73-121 (172)
172 PF12895 Apc3: Anaphase-promot 97.6 0.00012 2.6E-09 56.8 5.1 82 635-749 2-84 (84)
173 PRK02603 photosystem I assembl 97.6 0.0033 7.2E-08 56.8 15.1 95 587-713 35-131 (172)
174 PF08579 RPM2: Mitochondrial r 97.6 0.00066 1.4E-08 53.3 8.8 77 728-804 30-115 (120)
175 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.2E-08 67.7 12.6 119 686-804 64-184 (429)
176 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.6E-08 51.1 10.6 78 127-204 30-116 (120)
177 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.7E-09 43.8 3.7 29 760-788 2-30 (31)
178 PF13432 TPR_16: Tetratricopep 97.5 0.00038 8.3E-09 50.8 7.0 56 694-751 3-59 (65)
179 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.6E-08 66.2 13.4 122 295-416 63-186 (429)
180 PF13414 TPR_11: TPR repeat; P 97.5 0.00028 6.1E-09 52.3 6.1 63 722-786 2-66 (69)
181 COG3898 Uncharacterized membra 97.5 0.11 2.5E-06 50.7 30.5 49 485-534 166-214 (531)
182 PF14559 TPR_19: Tetratricopep 97.5 0.00025 5.3E-09 52.4 5.6 63 734-800 2-65 (68)
183 PF01535 PPR: PPR repeat; Int 97.5 0.00014 3E-09 43.6 3.4 29 725-753 2-30 (31)
184 KOG1130 Predicted G-alpha GTPa 97.5 0.0035 7.5E-08 61.0 14.1 272 482-786 26-343 (639)
185 KOG2041 WD40 repeat protein [G 97.4 0.22 4.7E-06 52.6 29.0 156 241-428 748-903 (1189)
186 PRK10803 tol-pal system protei 97.4 0.0024 5.2E-08 61.3 12.8 102 689-796 144-253 (263)
187 PF13432 TPR_16: Tetratricopep 97.4 0.0004 8.6E-09 50.7 5.9 62 728-793 2-64 (65)
188 KOG1538 Uncharacterized conser 97.4 0.04 8.6E-07 57.2 21.3 89 688-787 747-846 (1081)
189 PF06239 ECSIT: Evolutionarily 97.4 0.0019 4E-08 57.8 10.6 84 721-805 45-150 (228)
190 COG4235 Cytochrome c biogenesi 97.4 0.01 2.2E-07 56.3 15.9 100 619-752 153-256 (287)
191 PRK10866 outer membrane biogen 97.4 0.054 1.2E-06 51.8 21.1 59 557-617 37-99 (243)
192 PRK10866 outer membrane biogen 97.4 0.11 2.4E-06 49.7 23.2 181 443-649 37-239 (243)
193 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.3E-07 48.8 14.1 58 594-651 8-67 (120)
194 CHL00033 ycf3 photosystem I as 97.3 0.0037 8.1E-08 56.3 12.4 95 688-784 35-139 (168)
195 PF05843 Suf: Suppressor of fo 97.3 0.005 1.1E-07 60.5 13.5 131 264-397 3-136 (280)
196 KOG1130 Predicted G-alpha GTPa 97.3 0.011 2.3E-07 57.8 14.8 136 555-716 198-343 (639)
197 PF04840 Vps16_C: Vps16, C-ter 97.3 0.25 5.5E-06 49.2 30.0 106 335-460 179-284 (319)
198 PF05843 Suf: Suppressor of fo 97.2 0.0066 1.4E-07 59.7 13.5 97 701-801 49-148 (280)
199 PF13371 TPR_9: Tetratricopept 97.2 0.002 4.3E-08 48.3 7.6 53 732-786 4-57 (73)
200 PF06239 ECSIT: Evolutionarily 97.2 0.0089 1.9E-07 53.6 12.1 48 191-238 46-98 (228)
201 PF14559 TPR_19: Tetratricopep 97.1 0.00076 1.6E-08 49.8 4.7 62 699-764 2-64 (68)
202 PF07079 DUF1347: Protein of u 97.1 0.36 7.7E-06 48.5 46.0 454 132-649 16-522 (549)
203 KOG1538 Uncharacterized conser 97.0 0.13 2.8E-06 53.6 20.6 97 589-716 749-845 (1081)
204 PRK15331 chaperone protein Sic 97.0 0.018 4E-07 49.5 12.5 90 694-786 43-133 (165)
205 KOG2796 Uncharacterized conser 97.0 0.15 3.3E-06 47.0 18.6 148 591-768 181-329 (366)
206 KOG2796 Uncharacterized conser 97.0 0.17 3.8E-06 46.6 18.7 133 158-291 178-315 (366)
207 PF13424 TPR_12: Tetratricopep 96.9 0.0015 3.3E-08 49.8 4.9 61 725-785 7-73 (78)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.007 1.5E-07 61.1 10.5 66 685-752 72-141 (453)
209 PF13424 TPR_12: Tetratricopep 96.9 0.0036 7.9E-08 47.6 6.7 64 688-751 5-74 (78)
210 KOG2114 Vacuolar assembly/sort 96.9 0.91 2E-05 49.4 28.3 119 123-253 335-457 (933)
211 PF13371 TPR_9: Tetratricopept 96.9 0.0044 9.5E-08 46.5 6.9 62 695-760 2-64 (73)
212 PF03704 BTAD: Bacterial trans 96.9 0.014 3.1E-07 51.0 11.0 97 698-796 16-139 (146)
213 PRK10803 tol-pal system protei 96.8 0.016 3.5E-07 55.7 12.0 50 599-650 155-208 (263)
214 PF13525 YfiO: Outer membrane 96.8 0.19 4.2E-06 46.7 18.9 64 123-186 6-71 (203)
215 PF13525 YfiO: Outer membrane 96.8 0.25 5.4E-06 46.0 19.6 70 68-154 5-74 (203)
216 COG3898 Uncharacterized membra 96.8 0.62 1.3E-05 45.9 33.3 148 43-221 64-217 (531)
217 COG1729 Uncharacterized protei 96.8 0.015 3.2E-07 54.5 10.6 101 690-795 144-250 (262)
218 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0094 2E-07 60.2 9.6 67 719-787 70-141 (453)
219 PF03704 BTAD: Bacterial trans 96.7 0.086 1.9E-06 46.1 14.9 70 690-761 64-139 (146)
220 PRK15331 chaperone protein Sic 96.7 0.056 1.2E-06 46.6 12.4 89 629-751 44-133 (165)
221 KOG2041 WD40 repeat protein [G 96.6 1.2 2.6E-05 47.3 31.0 203 224-464 689-904 (1189)
222 PRK11906 transcriptional regul 96.5 0.17 3.6E-06 51.6 17.0 145 603-784 274-433 (458)
223 KOG0543 FKBP-type peptidyl-pro 96.5 0.061 1.3E-06 53.2 13.5 137 629-786 215-354 (397)
224 PF13281 DUF4071: Domain of un 96.3 0.84 1.8E-05 46.0 19.9 33 471-503 303-335 (374)
225 KOG1941 Acetylcholine receptor 96.3 0.41 9E-06 46.5 16.8 139 591-751 126-274 (518)
226 PF13281 DUF4071: Domain of un 96.2 0.91 2E-05 45.7 20.0 168 592-794 146-339 (374)
227 PF10300 DUF3808: Protein of u 96.1 0.28 6E-06 52.2 17.1 163 590-786 191-375 (468)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.9 4.1E-05 43.5 37.9 148 554-736 399-548 (660)
229 KOG4555 TPR repeat-containing 96.0 0.07 1.5E-06 43.2 9.0 94 695-790 50-147 (175)
230 KOG2114 Vacuolar assembly/sort 96.0 3.1 6.8E-05 45.6 29.2 78 134-218 380-457 (933)
231 KOG2280 Vacuolar assembly/sort 96.0 3.1 6.7E-05 45.0 33.3 334 197-577 442-795 (829)
232 PF12921 ATP13: Mitochondrial 95.9 0.18 3.8E-06 42.2 11.5 100 621-736 1-101 (126)
233 KOG0543 FKBP-type peptidyl-pro 95.9 0.091 2E-06 52.1 11.1 107 694-803 214-334 (397)
234 KOG1585 Protein required for f 95.9 1.4 3E-05 40.6 18.0 214 63-321 26-250 (308)
235 PF04840 Vps16_C: Vps16, C-ter 95.8 2.3 5E-05 42.5 30.9 107 370-496 179-285 (319)
236 KOG1941 Acetylcholine receptor 95.8 0.4 8.7E-06 46.6 14.3 206 553-784 44-272 (518)
237 KOG1258 mRNA processing protei 95.7 3.4 7.3E-05 43.7 35.7 184 507-737 296-489 (577)
238 PF13512 TPR_18: Tetratricopep 95.7 0.39 8.4E-06 40.6 12.5 63 630-723 18-80 (142)
239 KOG4555 TPR repeat-containing 95.7 0.16 3.5E-06 41.2 9.7 92 630-753 51-145 (175)
240 COG5107 RNA14 Pre-mRNA 3'-end 95.7 2.8 6E-05 42.4 39.0 144 623-802 398-544 (660)
241 COG0457 NrfG FOG: TPR repeat [ 95.6 2.3 4.9E-05 40.7 29.2 198 555-786 62-264 (291)
242 PF12921 ATP13: Mitochondrial 95.6 0.16 3.6E-06 42.3 10.0 79 228-306 3-96 (126)
243 COG3118 Thioredoxin domain-con 95.4 2 4.3E-05 41.1 17.2 51 167-218 144-194 (304)
244 COG3118 Thioredoxin domain-con 95.3 2.1 4.5E-05 41.0 17.1 150 199-352 141-291 (304)
245 KOG1920 IkappaB kinase complex 95.3 3.4 7.4E-05 47.3 21.3 142 440-612 910-1051(1265)
246 KOG1585 Protein required for f 95.3 2.5 5.3E-05 39.1 16.8 201 163-390 37-249 (308)
247 PF13512 TPR_18: Tetratricopep 95.2 0.49 1.1E-05 40.0 11.6 98 690-793 12-132 (142)
248 KOG2610 Uncharacterized conser 95.2 0.47 1E-05 45.6 12.6 49 565-614 116-164 (491)
249 PF10345 Cohesin_load: Cohesin 95.2 6.8 0.00015 43.8 37.0 191 50-255 39-253 (608)
250 COG1729 Uncharacterized protei 95.2 0.33 7.2E-06 45.7 11.6 95 75-186 148-244 (262)
251 PRK11906 transcriptional regul 95.1 0.6 1.3E-05 47.8 14.0 87 702-794 318-406 (458)
252 PF04053 Coatomer_WDAD: Coatom 95.1 0.54 1.2E-05 49.2 14.3 159 560-783 269-427 (443)
253 PF13428 TPR_14: Tetratricopep 94.8 0.073 1.6E-06 34.8 4.5 38 690-729 3-41 (44)
254 PF04184 ST7: ST7 protein; In 94.8 3.6 7.9E-05 42.5 18.2 98 624-752 261-375 (539)
255 PF13428 TPR_14: Tetratricopep 94.7 0.087 1.9E-06 34.4 4.9 40 123-163 2-41 (44)
256 KOG3941 Intermediate in Toll s 94.7 0.19 4.2E-06 46.8 8.5 87 687-773 66-173 (406)
257 PF10602 RPN7: 26S proteasome 94.6 0.58 1.3E-05 42.1 11.5 97 689-785 37-140 (177)
258 KOG1258 mRNA processing protei 94.6 7.5 0.00016 41.2 34.6 181 403-598 297-486 (577)
259 PF04184 ST7: ST7 protein; In 94.5 2.7 5.8E-05 43.4 16.7 151 163-327 174-324 (539)
260 PF13431 TPR_17: Tetratricopep 94.5 0.039 8.6E-07 33.5 2.6 31 711-743 2-33 (34)
261 KOG2610 Uncharacterized conser 94.4 1.5 3.2E-05 42.4 13.7 50 381-431 116-165 (491)
262 PF09205 DUF1955: Domain of un 94.4 2.2 4.9E-05 35.1 12.7 139 203-364 13-151 (161)
263 COG4649 Uncharacterized protei 94.4 2.6 5.6E-05 36.6 13.7 133 122-255 59-195 (221)
264 COG4649 Uncharacterized protei 94.3 3.3 7.1E-05 36.0 14.1 134 632-795 68-204 (221)
265 PF13176 TPR_7: Tetratricopept 94.2 0.1 2.2E-06 32.3 4.0 27 725-751 1-27 (36)
266 COG4105 ComL DNA uptake lipopr 94.2 5 0.00011 37.7 20.5 56 305-361 174-232 (254)
267 PF09205 DUF1955: Domain of un 94.2 2.8 6E-05 34.6 15.7 66 588-654 87-152 (161)
268 KOG3941 Intermediate in Toll s 94.1 0.91 2E-05 42.6 11.4 31 246-276 142-172 (406)
269 PF04053 Coatomer_WDAD: Coatom 94.1 1.4 3.1E-05 46.2 14.5 131 475-647 297-427 (443)
270 PF13170 DUF4003: Protein of u 94.0 4.5 9.8E-05 39.9 17.0 134 603-766 78-225 (297)
271 COG4785 NlpI Lipoprotein NlpI, 94.0 4.6 0.0001 36.6 16.4 183 132-327 75-266 (297)
272 COG0457 NrfG FOG: TPR repeat [ 93.8 6.2 0.00013 37.5 32.3 222 487-751 37-264 (291)
273 PF09613 HrpB1_HrpK: Bacterial 93.7 2.1 4.4E-05 37.1 12.2 99 690-793 9-112 (160)
274 COG4105 ComL DNA uptake lipopr 93.7 6.2 0.00013 37.1 20.4 55 694-750 173-231 (254)
275 PF13431 TPR_17: Tetratricopep 93.6 0.06 1.3E-06 32.7 2.2 32 746-779 2-34 (34)
276 PF08631 SPO22: Meiosis protei 93.6 8.1 0.00018 38.1 25.4 62 229-291 86-150 (278)
277 smart00299 CLH Clathrin heavy 93.5 4.5 9.8E-05 34.8 15.8 40 304-344 13-52 (140)
278 KOG4234 TPR repeat-containing 93.3 1.2 2.5E-05 39.7 10.1 97 694-796 101-204 (271)
279 smart00299 CLH Clathrin heavy 93.3 4.9 0.00011 34.6 16.0 84 338-429 12-95 (140)
280 KOG4648 Uncharacterized conser 93.3 0.31 6.7E-06 46.8 7.2 103 694-801 103-206 (536)
281 KOG1920 IkappaB kinase complex 93.2 16 0.00035 42.2 20.9 159 240-430 893-1053(1265)
282 PF06552 TOM20_plant: Plant sp 93.0 0.35 7.6E-06 42.3 6.6 76 704-789 51-138 (186)
283 PF10300 DUF3808: Protein of u 93.0 15 0.00032 39.4 24.0 160 373-535 193-374 (468)
284 PF00515 TPR_1: Tetratricopept 92.9 0.22 4.7E-06 30.2 3.9 27 690-716 3-29 (34)
285 COG3629 DnrI DNA-binding trans 92.8 0.91 2E-05 43.6 9.7 77 689-767 154-236 (280)
286 KOG1464 COP9 signalosome, subu 92.6 9.1 0.0002 35.9 15.8 188 134-321 39-254 (440)
287 PRK09687 putative lyase; Provi 92.6 11 0.00025 36.9 28.8 235 506-805 35-279 (280)
288 PF00515 TPR_1: Tetratricopept 92.5 0.26 5.6E-06 29.8 3.9 27 725-751 3-29 (34)
289 PF09613 HrpB1_HrpK: Bacterial 92.3 7.1 0.00015 33.9 13.5 20 132-151 54-73 (160)
290 PF06552 TOM20_plant: Plant sp 92.2 1.7 3.7E-05 38.2 9.6 62 740-805 52-125 (186)
291 KOG2280 Vacuolar assembly/sort 92.2 21 0.00045 39.1 36.9 110 589-748 686-795 (829)
292 COG2976 Uncharacterized protei 92.1 8.2 0.00018 34.6 13.8 92 594-718 96-189 (207)
293 PF07719 TPR_2: Tetratricopept 91.7 0.3 6.5E-06 29.5 3.6 26 726-751 4-29 (34)
294 COG3629 DnrI DNA-binding trans 91.7 1.7 3.8E-05 41.8 10.1 73 123-196 154-231 (280)
295 PF07719 TPR_2: Tetratricopept 91.7 0.34 7.5E-06 29.2 3.8 31 690-722 3-33 (34)
296 COG2909 MalT ATP-dependent tra 91.5 28 0.0006 39.1 27.5 24 373-396 623-646 (894)
297 TIGR02561 HrpB1_HrpK type III 91.5 4.7 0.0001 34.3 11.1 99 690-793 9-112 (153)
298 PF13176 TPR_7: Tetratricopept 91.4 0.38 8.3E-06 29.6 3.8 27 690-716 1-27 (36)
299 PF08631 SPO22: Meiosis protei 91.3 16 0.00034 36.0 25.8 155 133-290 4-185 (278)
300 COG4785 NlpI Lipoprotein NlpI, 91.1 12 0.00026 34.1 18.9 69 548-617 94-163 (297)
301 PF13170 DUF4003: Protein of u 90.7 19 0.0004 35.7 21.1 48 245-292 80-133 (297)
302 PF10345 Cohesin_load: Cohesin 90.6 33 0.00072 38.4 40.3 62 415-476 373-450 (608)
303 KOG4234 TPR repeat-containing 90.3 2.9 6.4E-05 37.2 9.2 93 597-724 105-202 (271)
304 PF10602 RPN7: 26S proteasome 90.0 3 6.6E-05 37.5 9.7 63 123-185 37-101 (177)
305 PF07035 Mic1: Colon cancer-as 89.9 13 0.00029 32.8 14.1 23 220-242 22-44 (167)
306 KOG4648 Uncharacterized conser 89.7 2.6 5.6E-05 40.9 9.2 93 629-757 104-197 (536)
307 COG2909 MalT ATP-dependent tra 89.7 40 0.00087 38.0 27.6 234 517-783 424-684 (894)
308 PF07035 Mic1: Colon cancer-as 89.4 15 0.00031 32.5 15.3 101 178-288 15-115 (167)
309 COG2976 Uncharacterized protei 88.6 18 0.00039 32.6 14.5 91 694-788 95-189 (207)
310 PF13181 TPR_8: Tetratricopept 88.5 0.77 1.7E-05 27.7 3.4 26 726-751 4-29 (34)
311 KOG0276 Vesicle coat complex C 87.9 5.3 0.00011 42.1 10.6 150 239-429 598-747 (794)
312 KOG1586 Protein required for f 87.6 24 0.00051 32.8 17.9 54 601-654 128-186 (288)
313 PF13374 TPR_10: Tetratricopep 87.4 1.2 2.6E-05 28.4 4.0 28 724-751 3-30 (42)
314 PF04097 Nic96: Nup93/Nic96; 87.2 55 0.0012 36.6 25.1 42 233-275 117-158 (613)
315 KOG1550 Extracellular protein 87.2 52 0.0011 36.3 26.6 249 485-787 261-538 (552)
316 PF02259 FAT: FAT domain; Int 86.8 40 0.00087 34.6 24.4 68 621-716 145-212 (352)
317 KOG4570 Uncharacterized conser 86.6 3.1 6.7E-05 39.9 7.6 102 116-221 58-164 (418)
318 TIGR03504 FimV_Cterm FimV C-te 86.6 1.4 3.1E-05 28.5 3.8 26 764-789 5-30 (44)
319 PF13181 TPR_8: Tetratricopept 86.3 0.95 2.1E-05 27.2 2.9 31 690-722 3-33 (34)
320 PF04097 Nic96: Nup93/Nic96; 86.2 62 0.0013 36.2 23.4 47 262-311 112-158 (613)
321 KOG0276 Vesicle coat complex C 86.1 10 0.00023 40.1 11.5 28 689-716 667-694 (794)
322 COG1747 Uncharacterized N-term 85.9 48 0.001 34.7 24.7 180 156-343 65-249 (711)
323 PF13374 TPR_10: Tetratricopep 85.3 1.6 3.4E-05 27.7 3.8 28 759-786 3-30 (42)
324 KOG4570 Uncharacterized conser 85.3 9 0.00019 37.0 9.8 47 313-359 115-161 (418)
325 KOG1550 Extracellular protein 85.1 66 0.0014 35.5 26.0 113 138-257 228-358 (552)
326 PRK11619 lytic murein transgly 85.0 71 0.0015 35.8 38.4 54 119-173 126-179 (644)
327 KOG3364 Membrane protein invol 84.9 12 0.00026 31.2 9.1 23 764-786 77-99 (149)
328 COG0790 FOG: TPR repeat, SEL1 84.8 44 0.00095 33.2 21.7 190 564-797 53-276 (292)
329 KOG4642 Chaperone-dependent E3 84.2 21 0.00045 33.2 11.2 115 632-780 20-139 (284)
330 TIGR02561 HrpB1_HrpK type III 82.9 29 0.00063 29.7 11.9 20 132-151 54-73 (153)
331 PF13174 TPR_6: Tetratricopept 82.1 1.4 3.1E-05 26.1 2.4 23 764-786 6-28 (33)
332 KOG4642 Chaperone-dependent E3 81.7 12 0.00026 34.7 8.7 103 696-802 18-126 (284)
333 PF09986 DUF2225: Uncharacteri 81.6 14 0.0003 34.5 9.7 95 698-792 87-199 (214)
334 PF14853 Fis1_TPR_C: Fis1 C-te 81.6 4 8.6E-05 27.8 4.5 34 764-799 7-40 (53)
335 KOG0687 26S proteasome regulat 81.1 59 0.0013 31.9 15.1 94 690-785 106-208 (393)
336 PF13174 TPR_6: Tetratricopept 80.7 1.9 4.1E-05 25.5 2.6 24 728-751 5-28 (33)
337 KOG2066 Vacuolar assembly/sort 80.7 1E+02 0.0022 34.4 28.3 105 75-204 363-467 (846)
338 PRK11619 lytic murein transgly 80.4 1.1E+02 0.0023 34.5 40.5 117 311-430 254-373 (644)
339 PF07721 TPR_4: Tetratricopept 80.4 2.4 5.2E-05 23.7 2.7 21 762-782 5-25 (26)
340 PF11207 DUF2989: Protein of u 80.2 20 0.00043 32.6 9.6 80 699-779 117-199 (203)
341 COG4455 ImpE Protein of avirul 79.9 9.4 0.0002 34.8 7.4 58 692-751 5-63 (273)
342 PF02284 COX5A: Cytochrome c o 79.5 29 0.00062 27.4 9.7 75 124-199 10-86 (108)
343 PF11207 DUF2989: Protein of u 79.2 17 0.00036 33.0 8.9 20 261-280 177-196 (203)
344 PRK09687 putative lyase; Provi 79.2 68 0.0015 31.6 26.9 23 373-396 240-262 (280)
345 KOG1308 Hsp70-interacting prot 78.3 3.1 6.6E-05 40.6 4.3 115 634-784 126-241 (377)
346 COG4455 ImpE Protein of avirul 77.9 16 0.00036 33.3 8.3 75 726-802 4-81 (273)
347 PF00637 Clathrin: Region in C 77.9 1.5 3.3E-05 38.0 2.1 84 304-394 13-96 (143)
348 COG3947 Response regulator con 77.8 12 0.00025 35.9 7.7 60 690-751 281-341 (361)
349 PF00637 Clathrin: Region in C 77.4 1.8 3.8E-05 37.6 2.4 54 694-747 13-66 (143)
350 KOG0376 Serine-threonine phosp 76.2 5.2 0.00011 41.1 5.5 104 695-804 11-116 (476)
351 PF10579 Rapsyn_N: Rapsyn N-te 76.2 6.6 0.00014 29.1 4.5 46 700-745 18-65 (80)
352 PF07721 TPR_4: Tetratricopept 76.1 4 8.7E-05 22.8 2.8 21 126-146 5-25 (26)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 76.1 20 0.00043 27.9 7.1 60 570-630 25-84 (103)
354 COG1747 Uncharacterized N-term 76.1 1.1E+02 0.0024 32.3 24.3 178 190-377 64-248 (711)
355 COG3947 Response regulator con 75.8 80 0.0017 30.6 18.0 71 725-797 281-357 (361)
356 PF02284 COX5A: Cytochrome c o 75.4 39 0.00084 26.7 8.9 45 211-255 29-73 (108)
357 KOG2066 Vacuolar assembly/sort 75.0 1.5E+02 0.0032 33.2 28.5 44 230-277 395-438 (846)
358 PF04910 Tcf25: Transcriptiona 75.0 1.1E+02 0.0023 31.6 20.7 40 111-150 29-68 (360)
359 smart00028 TPR Tetratricopepti 74.7 5.1 0.00011 22.9 3.4 27 690-716 3-29 (34)
360 PF10579 Rapsyn_N: Rapsyn N-te 73.8 6.9 0.00015 29.0 4.1 50 734-783 17-68 (80)
361 KOG1586 Protein required for f 73.8 78 0.0017 29.6 20.7 18 274-291 166-183 (288)
362 smart00028 TPR Tetratricopepti 73.3 5.8 0.00013 22.6 3.4 24 762-785 5-28 (34)
363 KOG1308 Hsp70-interacting prot 73.1 2.7 5.9E-05 41.0 2.5 94 699-796 125-220 (377)
364 PF13929 mRNA_stabil: mRNA sta 72.6 98 0.0021 30.1 17.1 116 383-498 143-263 (292)
365 KOG2471 TPR repeat-containing 72.0 1.3E+02 0.0029 31.4 15.6 118 597-736 250-382 (696)
366 KOG0687 26S proteasome regulat 71.6 1.1E+02 0.0023 30.2 14.4 37 301-337 107-147 (393)
367 PF04190 DUF410: Protein of un 71.5 1E+02 0.0022 29.9 16.7 82 686-786 88-169 (260)
368 KOG4507 Uncharacterized conser 70.1 20 0.00044 37.9 7.9 86 698-786 617-704 (886)
369 PRK10941 hypothetical protein; 68.9 56 0.0012 31.8 10.4 56 728-785 186-242 (269)
370 COG5159 RPN6 26S proteasome re 68.5 1.2E+02 0.0025 29.3 16.7 98 513-615 130-234 (421)
371 COG5159 RPN6 26S proteasome re 68.3 1.2E+02 0.0025 29.3 15.6 23 442-464 129-151 (421)
372 TIGR02508 type_III_yscG type I 67.5 59 0.0013 25.6 8.2 13 518-530 49-61 (115)
373 KOG0376 Serine-threonine phosp 67.3 11 0.00024 38.9 5.4 104 630-769 12-116 (476)
374 PF08424 NRDE-2: NRDE-2, neces 66.2 1.5E+02 0.0033 29.9 17.7 101 687-789 64-185 (321)
375 PF11846 DUF3366: Domain of un 66.1 41 0.0009 30.9 8.8 33 754-786 140-172 (193)
376 KOG2063 Vacuolar assembly/sort 65.8 2.6E+02 0.0057 32.4 26.7 61 125-185 310-374 (877)
377 TIGR03504 FimV_Cterm FimV C-te 65.5 16 0.00035 23.7 4.1 22 199-220 6-27 (44)
378 PF04190 DUF410: Protein of un 65.4 1.4E+02 0.003 29.1 18.1 26 226-251 89-114 (260)
379 PHA02875 ankyrin repeat protei 65.1 1.9E+02 0.0041 30.5 18.0 44 390-437 183-229 (413)
380 KOG4507 Uncharacterized conser 64.7 27 0.00059 37.0 7.6 106 548-654 603-708 (886)
381 KOG2471 TPR repeat-containing 64.0 2E+02 0.0042 30.3 13.9 111 516-634 248-381 (696)
382 PF02259 FAT: FAT domain; Int 63.9 1.8E+02 0.0038 29.8 26.3 67 585-651 144-213 (352)
383 KOG2908 26S proteasome regulat 63.1 65 0.0014 31.9 9.3 83 694-776 81-175 (380)
384 PF07163 Pex26: Pex26 protein; 62.9 87 0.0019 30.2 9.8 88 409-496 89-181 (309)
385 KOG1464 COP9 signalosome, subu 62.7 1.4E+02 0.0031 28.4 22.1 96 555-650 148-259 (440)
386 KOG3364 Membrane protein invol 62.3 46 0.00099 28.0 7.0 69 687-758 31-104 (149)
387 KOG2062 26S proteasome regulat 62.0 2.7E+02 0.0057 31.2 40.8 121 596-751 510-634 (929)
388 COG0790 FOG: TPR repeat, SEL1 62.0 1.7E+02 0.0037 29.0 22.0 150 565-755 90-269 (292)
389 KOG0890 Protein kinase of the 60.9 4.9E+02 0.011 33.9 33.8 314 197-535 1388-1729(2382)
390 TIGR02508 type_III_yscG type I 60.2 84 0.0018 24.8 9.0 51 131-187 48-98 (115)
391 PF11848 DUF3368: Domain of un 60.1 31 0.00068 22.9 4.9 35 768-802 12-46 (48)
392 cd00923 Cyt_c_Oxidase_Va Cytoc 58.8 88 0.0019 24.6 9.1 45 140-184 25-69 (103)
393 PF00244 14-3-3: 14-3-3 protei 57.8 1.6E+02 0.0035 28.1 11.2 49 603-651 142-198 (236)
394 PF07575 Nucleopor_Nup85: Nup8 57.8 3.1E+02 0.0066 30.5 17.7 62 402-465 404-465 (566)
395 PF14853 Fis1_TPR_C: Fis1 C-te 57.7 41 0.00089 23.0 5.2 29 694-724 7-35 (53)
396 KOG2422 Uncharacterized conser 57.2 2.4E+02 0.0053 30.4 12.8 108 68-185 284-406 (665)
397 PF14689 SPOB_a: Sensor_kinase 57.1 23 0.00049 25.2 4.1 23 728-750 28-50 (62)
398 PF12862 Apc5: Anaphase-promot 56.3 56 0.0012 25.6 6.7 53 699-751 9-69 (94)
399 PF07575 Nucleopor_Nup85: Nup8 55.7 3.3E+02 0.0072 30.3 18.2 25 69-93 149-173 (566)
400 PF13929 mRNA_stabil: mRNA sta 55.6 2.1E+02 0.0045 28.0 17.7 63 330-392 199-262 (292)
401 PF07163 Pex26: Pex26 protein; 54.4 1.5E+02 0.0033 28.6 9.9 21 340-360 125-145 (309)
402 PF14689 SPOB_a: Sensor_kinase 54.0 28 0.0006 24.8 4.1 46 739-786 6-51 (62)
403 COG5187 RPN7 26S proteasome re 53.6 2.2E+02 0.0048 27.6 12.6 23 690-712 117-139 (412)
404 KOG2396 HAT (Half-A-TPR) repea 52.4 3.2E+02 0.0068 29.1 38.3 242 386-650 300-558 (568)
405 PF12862 Apc5: Anaphase-promot 52.1 68 0.0015 25.1 6.6 54 733-786 8-69 (94)
406 PF11663 Toxin_YhaV: Toxin wit 51.4 17 0.00038 30.3 3.0 34 768-803 105-138 (140)
407 PF11846 DUF3366: Domain of un 51.3 35 0.00077 31.3 5.6 54 44-97 120-173 (193)
408 PF11817 Foie-gras_1: Foie gra 48.5 81 0.0017 30.4 7.8 61 725-785 180-245 (247)
409 PF14561 TPR_20: Tetratricopep 47.9 1.3E+02 0.0028 23.4 8.4 55 720-774 18-74 (90)
410 COG4259 Uncharacterized protei 47.4 1.2E+02 0.0026 23.9 6.6 25 727-751 76-100 (121)
411 PF09670 Cas_Cas02710: CRISPR- 46.8 3.3E+02 0.0071 28.3 12.3 53 202-255 141-197 (379)
412 PF14669 Asp_Glu_race_2: Putat 46.8 2.2E+02 0.0049 25.8 15.1 55 338-392 137-205 (233)
413 PF09986 DUF2225: Uncharacteri 45.8 2.6E+02 0.0056 26.2 11.7 26 692-717 169-194 (214)
414 PHA02875 ankyrin repeat protei 45.7 3.9E+02 0.0084 28.2 15.8 27 373-403 204-230 (413)
415 PRK10941 hypothetical protein; 45.7 2.6E+02 0.0056 27.3 10.6 58 233-291 187-244 (269)
416 KOG0551 Hsp90 co-chaperone CNS 45.1 86 0.0019 31.0 7.0 93 691-785 84-180 (390)
417 KOG0551 Hsp90 co-chaperone CNS 44.7 1.6E+02 0.0035 29.3 8.7 96 624-750 83-180 (390)
418 PF11663 Toxin_YhaV: Toxin wit 44.6 26 0.00056 29.3 3.0 34 697-732 104-137 (140)
419 KOG4077 Cytochrome c oxidase, 44.2 1.2E+02 0.0027 25.1 6.7 44 708-751 69-112 (149)
420 KOG0545 Aryl-hydrocarbon recep 43.2 3E+02 0.0065 26.2 11.2 60 690-751 232-292 (329)
421 smart00777 Mad3_BUB1_I Mad3/BU 42.8 1.3E+02 0.0029 25.1 7.0 43 740-782 80-123 (125)
422 KOG2582 COP9 signalosome, subu 42.8 3.8E+02 0.0082 27.2 16.4 54 450-503 289-346 (422)
423 COG2178 Predicted RNA-binding 42.7 2.6E+02 0.0057 25.4 10.0 93 693-786 34-149 (204)
424 KOG4077 Cytochrome c oxidase, 42.5 1.6E+02 0.0035 24.5 7.0 59 570-629 67-125 (149)
425 COG5187 RPN7 26S proteasome re 42.2 3.4E+02 0.0073 26.5 13.3 67 297-363 114-185 (412)
426 PF09477 Type_III_YscG: Bacter 41.0 1.9E+02 0.0041 23.3 7.5 79 703-788 21-99 (116)
427 KOG2062 26S proteasome regulat 41.0 5.7E+02 0.012 28.8 37.0 125 629-786 508-634 (929)
428 KOG4279 Serine/threonine prote 40.3 5.8E+02 0.013 28.7 13.4 197 569-798 180-404 (1226)
429 PF04910 Tcf25: Transcriptiona 40.2 4.4E+02 0.0094 27.2 22.8 171 134-327 22-222 (360)
430 PF10475 DUF2450: Protein of u 39.9 3.9E+02 0.0084 26.5 11.5 22 261-282 196-217 (291)
431 PF11848 DUF3368: Domain of un 39.9 1.1E+02 0.0023 20.4 5.0 31 310-340 14-44 (48)
432 PF13762 MNE1: Mitochondrial s 37.5 2.7E+02 0.0059 24.0 10.2 45 759-803 80-125 (145)
433 PF08424 NRDE-2: NRDE-2, neces 37.4 4.5E+02 0.0098 26.6 18.1 121 603-756 47-188 (321)
434 cd08819 CARD_MDA5_2 Caspase ac 37.2 1.9E+02 0.0042 22.3 6.8 13 276-288 50-62 (88)
435 PF10255 Paf67: RNA polymerase 36.9 2E+02 0.0044 29.9 8.7 60 725-784 124-190 (404)
436 PF10255 Paf67: RNA polymerase 36.7 3.6E+02 0.0078 28.1 10.4 68 624-715 124-191 (404)
437 KOG2396 HAT (Half-A-TPR) repea 36.2 5.7E+02 0.012 27.3 40.2 88 692-784 464-556 (568)
438 KOG0890 Protein kinase of the 36.1 1.1E+03 0.025 30.9 37.2 62 404-468 1671-1732(2382)
439 PF15297 CKAP2_C: Cytoskeleton 36.0 2.9E+02 0.0064 27.8 9.2 68 700-769 114-186 (353)
440 PF09670 Cas_Cas02710: CRISPR- 35.6 5.3E+02 0.011 26.8 11.9 56 165-221 139-198 (379)
441 PF13762 MNE1: Mitochondrial s 35.2 3E+02 0.0064 23.8 10.2 79 160-238 42-126 (145)
442 KOG0991 Replication factor C, 35.1 3.9E+02 0.0086 25.2 12.6 59 698-757 202-272 (333)
443 COG2812 DnaX DNA polymerase II 34.7 5.9E+02 0.013 27.7 11.9 59 38-98 164-228 (515)
444 KOG2422 Uncharacterized conser 34.7 6.4E+02 0.014 27.5 18.4 95 480-580 349-447 (665)
445 PF02184 HAT: HAT (Half-A-TPR) 34.5 60 0.0013 19.4 2.7 23 773-797 2-24 (32)
446 KOG1498 26S proteasome regulat 34.4 5.3E+02 0.012 26.5 17.9 59 269-327 178-241 (439)
447 KOG2659 LisH motif-containing 34.2 3E+02 0.0065 25.8 8.4 100 682-783 20-128 (228)
448 PF11768 DUF3312: Protein of u 34.2 5.9E+02 0.013 27.6 11.6 62 125-186 411-473 (545)
449 KOG3807 Predicted membrane pro 33.5 4.9E+02 0.011 25.8 11.3 72 567-651 231-304 (556)
450 PRK10564 maltose regulon perip 33.2 97 0.0021 30.3 5.5 37 294-330 252-289 (303)
451 PRK10564 maltose regulon perip 33.0 88 0.0019 30.6 5.2 38 719-756 252-290 (303)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 33.0 3E+02 0.0064 23.1 9.5 84 698-784 36-125 (126)
453 PRK13800 putative oxidoreducta 32.4 9.3E+02 0.02 28.7 29.1 109 686-804 787-895 (897)
454 KOG2063 Vacuolar assembly/sort 32.3 8.8E+02 0.019 28.4 27.2 39 482-520 600-638 (877)
455 COG4976 Predicted methyltransf 32.2 96 0.0021 28.9 4.9 53 697-751 4-57 (287)
456 PRK09857 putative transposase; 32.1 2.6E+02 0.0056 27.8 8.5 66 727-793 210-275 (292)
457 COG0735 Fur Fe2+/Zn2+ uptake r 31.9 2.2E+02 0.0047 24.7 7.0 23 695-717 27-49 (145)
458 KOG3807 Predicted membrane pro 31.8 5.3E+02 0.011 25.7 12.8 18 273-290 286-303 (556)
459 COG0735 Fur Fe2+/Zn2+ uptake r 31.5 2.1E+02 0.0046 24.7 6.9 45 161-205 24-68 (145)
460 PRK08691 DNA polymerase III su 31.5 5E+02 0.011 29.5 11.1 16 701-716 211-226 (709)
461 cd00280 TRFH Telomeric Repeat 30.9 3.3E+02 0.0072 24.6 7.7 21 235-255 119-139 (200)
462 KOG4521 Nuclear pore complex, 30.5 1E+03 0.022 28.6 14.7 173 73-250 925-1125(1480)
463 PF08311 Mad3_BUB1_I: Mad3/BUB 30.3 3.3E+02 0.0071 22.8 8.5 45 705-749 80-125 (126)
464 PF10366 Vps39_1: Vacuolar sor 30.3 3E+02 0.0065 22.3 8.1 27 370-396 41-67 (108)
465 COG5108 RPO41 Mitochondrial DN 30.2 2.2E+02 0.0048 31.2 7.8 91 693-786 33-131 (1117)
466 KOG0686 COP9 signalosome, subu 30.0 6.4E+02 0.014 26.1 14.2 62 123-185 151-215 (466)
467 PF14561 TPR_20: Tetratricopep 30.0 2.7E+02 0.0058 21.7 8.9 54 118-171 18-72 (90)
468 cd02679 MIT_spastin MIT: domai 29.8 1.6E+02 0.0036 22.2 5.0 45 735-786 20-67 (79)
469 COG4976 Predicted methyltransf 29.4 1.1E+02 0.0025 28.5 4.9 58 732-793 4-62 (287)
470 COG5108 RPO41 Mitochondrial DN 29.2 3.1E+02 0.0068 30.1 8.6 75 197-274 33-115 (1117)
471 KOG2297 Predicted translation 29.0 5.8E+02 0.012 25.2 18.7 21 473-493 321-341 (412)
472 PF15297 CKAP2_C: Cytoskeleton 29.0 5.6E+02 0.012 25.9 9.8 65 567-633 118-186 (353)
473 PRK14958 DNA polymerase III su 28.6 6.2E+02 0.013 27.7 11.3 21 772-792 259-279 (509)
474 PRK12798 chemotaxis protein; R 28.5 7E+02 0.015 26.1 21.6 193 564-792 124-329 (421)
475 PF10516 SHNi-TPR: SHNi-TPR; 28.1 1.5E+02 0.0032 18.6 3.8 27 725-751 3-29 (38)
476 cd02680 MIT_calpain7_2 MIT: do 28.1 1.2E+02 0.0026 22.6 4.0 51 734-784 17-70 (75)
477 PF04762 IKI3: IKI3 family; I 28.0 8.2E+02 0.018 29.2 12.9 26 590-615 815-842 (928)
478 KOG0686 COP9 signalosome, subu 27.5 7.1E+02 0.015 25.8 13.5 15 487-501 318-332 (466)
479 KOG4279 Serine/threonine prote 27.5 9.4E+02 0.02 27.2 14.6 99 551-652 200-317 (1226)
480 KOG4567 GTPase-activating prot 27.2 3.1E+02 0.0068 27.0 7.5 70 708-782 263-342 (370)
481 PF07720 TPR_3: Tetratricopept 26.8 1.1E+02 0.0024 18.8 3.1 22 761-782 4-25 (36)
482 PF07840 FadR_C: FadR C-termin 26.7 4.5E+02 0.0098 23.3 8.4 18 166-183 127-144 (164)
483 KOG4567 GTPase-activating prot 26.7 3.6E+02 0.0078 26.6 7.8 43 389-431 264-306 (370)
484 PF09454 Vps23_core: Vps23 cor 26.5 1.2E+02 0.0025 21.9 3.6 51 364-415 4-54 (65)
485 PF13934 ELYS: Nuclear pore co 26.4 5.6E+02 0.012 24.3 11.9 145 124-284 50-198 (226)
486 PF12968 DUF3856: Domain of Un 26.4 3.8E+02 0.0082 22.2 9.9 106 690-795 9-142 (144)
487 PF10366 Vps39_1: Vacuolar sor 26.2 3.6E+02 0.0077 21.9 7.5 27 589-615 41-67 (108)
488 PRK07003 DNA polymerase III su 25.7 7E+02 0.015 28.8 10.9 92 705-799 181-286 (830)
489 PRK14956 DNA polymerase III su 25.5 3.6E+02 0.0077 29.0 8.5 81 697-799 209-289 (484)
490 KOG0403 Neoplastic transformat 25.2 8.1E+02 0.018 25.7 29.8 493 126-703 54-589 (645)
491 PRK14963 DNA polymerase III su 24.9 7.3E+02 0.016 27.1 11.0 21 772-792 255-275 (504)
492 PF06855 DUF1250: Protein of u 24.7 1.1E+02 0.0023 20.2 2.9 42 54-95 1-42 (46)
493 PRK06645 DNA polymerase III su 24.0 6.8E+02 0.015 27.3 10.5 86 703-791 188-290 (507)
494 PRK14951 DNA polymerase III su 23.8 8.1E+02 0.017 27.6 11.1 20 772-791 264-283 (618)
495 cd07153 Fur_like Ferric uptake 23.8 1.9E+02 0.0041 23.7 5.1 43 164-206 7-49 (116)
496 PF11817 Foie-gras_1: Foie gra 23.7 3.7E+02 0.0081 25.8 7.9 24 626-649 182-205 (247)
497 PRK13342 recombination factor 23.6 8.8E+02 0.019 25.6 19.3 59 565-623 243-306 (413)
498 smart00386 HAT HAT (Half-A-TPR 23.3 1.5E+02 0.0033 16.7 3.7 14 242-255 2-15 (33)
499 PRK14963 DNA polymerase III su 23.0 1E+03 0.022 26.0 11.8 20 381-400 254-273 (504)
500 PRK11639 zinc uptake transcrip 22.9 3.8E+02 0.0081 24.0 7.1 49 160-208 28-76 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-83 Score=733.71 Aligned_cols=674 Identities=21% Similarity=0.317 Sum_probs=632.5
Q ss_pred ChHHHHHHHHhc--CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHH
Q 037510 33 SDDLLDSVLQKL--RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDE 110 (806)
Q Consensus 33 ~~~~~~~vl~~~--~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 110 (806)
++...+.++..+ ...+..|+.+|+.+. ..+.+|+..+|..+++.+.+.+.++.+..++..++..
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------- 115 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS------------- 115 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc-------------
Confidence 333344444433 347888999999876 4578899999999999999999999999998877653
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+...+..+++.++..|++.|+++.|.++|+.|.+ ||+.+||.++.+|++.|++++|+.+|++|...|+.|
T Consensus 116 ------~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P 185 (857)
T PLN03077 116 ------HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185 (857)
T ss_pred ------CCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 2345567889999999999999999999999986 799999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
|..||+.++.+|++.+++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|.. ||..+|+++|.
T Consensus 186 d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~ 261 (857)
T PLN03077 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMIS 261 (857)
T ss_pred ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 79999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+.+|++.|+++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 262 GYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 999999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999997 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
+.|..|+..+++.++++|++.|++++|.++|++|.+ +|..+|++++.+|++.|+.++|..+|++|.+ ++.||..|
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t 491 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVT 491 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhH
Confidence 999999999999999999999999999999999974 6889999999999999999999999999986 58999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
|+.++.+|++.|+.+.+.+++..+ .+.++.++..+++.|+.+|.+.|++++|.++|+++ .||..+|
T Consensus 492 ~~~lL~a~~~~g~l~~~~~i~~~~---------~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~ 557 (857)
T PLN03077 492 LIAALSACARIGALMCGKEIHAHV---------LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSW 557 (857)
T ss_pred HHHHHHHHhhhchHHHhHHHHHHH---------HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhH
Confidence 999999999999999999999999 78899999999999999999999999999999987 6799999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCCChhhhhhhhhhhhH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV-DFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~~~ 669 (806)
+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.++.
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~--------------- 622 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT--------------- 622 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---------------
Confidence 99999999999999999999999999999999999999999999999999999999999 56665
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
|+..+|++++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++
T Consensus 623 ----------------P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 623 ----------------PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred ----------------CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 488899999999999999999999999983 7899999999999999999999999999999
Q ss_pred HHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 750 LKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 750 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
.+ +.| +...|..|...|...|++++|.++.+.|.++|+.++..
T Consensus 684 ~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 684 FE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred Hh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 88 677 56677778889999999999999999999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-79 Score=699.87 Aligned_cols=654 Identities=19% Similarity=0.253 Sum_probs=621.3
Q ss_pred CCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHH
Q 037510 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALH 143 (806)
Q Consensus 64 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (806)
..++..+++.+++.|++.|++++|..++.++... +..++..+|..+++.|.+.+.++.|..
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-------------------g~~~~~~~~~~ll~~~~~~~~~~~a~~ 107 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-------------------RVPVDEDAYVALFRLCEWKRAVEEGSR 107 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-------------------CCCCChhHHHHHHHHHhhCCCHHHHHH
Confidence 4567788999999999999999999999988642 456677889999999999999999999
Q ss_pred HHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037510 144 VFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGF 223 (806)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 223 (806)
++..+.+.+..+++..+|+++..|++.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999995 58999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHH
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGV 303 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 303 (806)
.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~ 258 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNA 258 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 58899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCC
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECD 383 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 383 (806)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+||.++.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 384 MTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 384 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
+++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.
T Consensus 339 ~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred HHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999996 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhh
Q 037510 464 ILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSM 543 (806)
Q Consensus 464 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 543 (806)
+.+.|+.++..++++++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m--------- 481 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM--------- 481 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999964 68889999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 037510 544 EKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA 623 (806)
Q Consensus 544 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 623 (806)
.. +..||..+|+.++.+|.+.|..+.+.+++..+.+.|+.++..+++.++++|++.|++++|.++|+.+ .||..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 43 5899999999999999999999999999999999999999999999999999999999999999887 67999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+|+.++.+|++.|+.++|.++|++|.+.|+.| |..||+.++.+|++.|+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-------------------------------d~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNP-------------------------------DEVTFISLLCACSRSGM 604 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------------CcccHHHHHHHHhhcCh
Confidence 99999999999999999999999999988765 88899999999999999
Q ss_pred hhhHHHHHHHHH-HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALL-LTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
+++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|++|+.+|...|+.+.|....+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999 56999999999999999999999999999999983 79999999999999999999999999999
Q ss_pred HHHHCCCCCCHhhHHHH-HHhhh
Q 037510 783 KLRQKGLTPTVVTYNIL-IDGYC 804 (806)
Q Consensus 783 ~m~~~g~~p~~~~~~~l-i~~~~ 804 (806)
++.+ +.|+...+..+ ...|+
T Consensus 682 ~l~~--l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 682 HIFE--LDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHh--hCCCCcchHHHHHHHHH
Confidence 9988 78876555554 44554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-70 Score=610.32 Aligned_cols=548 Identities=20% Similarity=0.307 Sum_probs=497.6
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGF-ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYT 266 (806)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (806)
..++...|..++..+++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456777888999999999999999999999999885 56788888999999999999999999999875 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 037510 267 TLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL 346 (806)
Q Consensus 267 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 346 (806)
.++.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 037510 347 GQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR--QGIEPSVVTYNTLLKGLCRVGDVDEALH 424 (806)
Q Consensus 347 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 424 (806)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 5789999999999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037510 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC 504 (806)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 504 (806)
+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 505 LPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 505 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
.||..+|+.++.+|++.|++++|.++|+.| ...+..|+..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM---------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDI---------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999 77788999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhh
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 664 (806)
||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +++++|..+.+.+...+.
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------- 818 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------- 818 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc-----------
Confidence 9999999999999999999999999999999999999999999986543 246666655444332210
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFN 744 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 744 (806)
+......+..++|..+|++|++.|+.||..||+.++.+++..+..+.+..
T Consensus 819 ------------------------------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~ 868 (1060)
T PLN03218 819 ------------------------------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR 868 (1060)
T ss_pred ------------------------------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH
Confidence 01111223456799999999999999999999999988888999999999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 745 LRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 745 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+++.|...+..|+..+|++|++++++. .++|..++++|.+.|+.|+..
T Consensus 869 m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 869 LIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999988888888999999999998543 478999999999999999986
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-69 Score=601.71 Aligned_cols=547 Identities=21% Similarity=0.294 Sum_probs=366.1
Q ss_pred CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHH
Q 037510 154 IPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 154 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (806)
.++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+++.|.. ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34556666666666677777777777777766664 34555666666666666777777776666653 66677777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG 312 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 312 (806)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+. |+.||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence 77777777777777777777777776677777777777777777777777777777665 66667777777777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh--CCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD--WNLRPDSFSFNTLVDGYCRECDMTEAFRL 390 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 390 (806)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777667777777777777777777777777777777654 45666777777777777777777777777
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 037510 391 CAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFY 470 (806)
Q Consensus 391 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 470 (806)
|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC
Q 037510 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP 550 (806)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 550 (806)
|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++| ...++.|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM---------~~~Gi~P 752 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM---------KRLGLCP 752 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHcCCCC
Confidence 7777777777777777777777777777766666677777777777777777777777777766 5566667
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
|..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +++++|.++.+.+...+ + ..
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~ 820 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GR 820 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cc
Confidence 777777777777777777777777777777777777777777665443 23444444433333210 0 00
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 037510 631 TLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRI 710 (806)
Q Consensus 631 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 710 (806)
.....+..++|..+|++|.+.|+.| |..+|+.++.++++.+....+..+
T Consensus 821 ~~~~n~w~~~Al~lf~eM~~~Gi~P-------------------------------d~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 821 PQIENKWTSWALMVYRETISAGTLP-------------------------------TMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred cccccchHHHHHHHHHHHHHCCCCC-------------------------------CHHHHHHHHHHhcccccHHHHHHH
Confidence 1111122345777777777766554 666777777666666667777777
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 711 FSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 711 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
++.|...+..|+..+|++|++++++. .++|+.++++|.+.|+.|+..
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77666666666667777777766332 256777777777777776653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-63 Score=551.94 Aligned_cols=476 Identities=21% Similarity=0.258 Sum_probs=455.6
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 037510 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG-IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSL 233 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (806)
.+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 234 IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
+.+|++.|+++.|.++|++|.+ ||..+|++++.+|++.|++++|+++|++|.+. |..||..+|+.++.++++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999976 89999999999999999999999999999988 899999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAE 393 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 393 (806)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|. ++|..+||.+|.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 46899999999999999999999999999
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH
Q 037510 394 MLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT 473 (806)
Q Consensus 394 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 473 (806)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHH
Q 037510 474 ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSID 553 (806)
Q Consensus 474 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (806)
.+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|. ...++.|+..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~--------~~~g~~p~~~ 463 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS--------ENHRIKPRAM 463 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH--------HhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999993 3468999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP-NVAICSKLVSTL 632 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 632 (806)
+|+.++.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++.+. .| +..+|..+++.|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHH
Confidence 9999999999999999999998765 57899999999999999999999999999999764 44 577999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
++.|++++|.+++++|.+.|+.++
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccC
Confidence 999999999999999999998654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.1e-62 Score=542.57 Aligned_cols=475 Identities=19% Similarity=0.294 Sum_probs=415.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSL 339 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (806)
++..+|+.+|.++.+.|++++|+++|+.|....+..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45667888888888888888888888888876557788888999999998888888899999999888888899999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
+.+|++.|++++|.++|++|. .||..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999998886 4788899999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKM 499 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 499 (806)
+.+.+++..+.+.|..||..+++.++++|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999988863 58889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 037510 500 KELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQ 579 (806)
Q Consensus 500 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 579 (806)
.+.|+.||..||+.++.+|++.|++++|.+++..| .+.+..|+..+|+.|+.+|++.|++++|.++|++|.
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m---------~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL---------IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH---------HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 88888999999999999999999999999999888 778888899999999999999999999999998886
Q ss_pred HCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCChh
Q 037510 580 TMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD-FDFVPDLK 658 (806)
Q Consensus 580 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 658 (806)
.||..+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.
T Consensus 388 ----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~---- 459 (697)
T PLN03081 388 ----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK---- 459 (697)
T ss_pred ----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC----
Confidence 4688899999999999999999999999999889999999999999999999999999999999875 4554
Q ss_pred hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 037510 659 YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGD 738 (806)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 738 (806)
|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|+..|+
T Consensus 460 ---------------------------p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 460 ---------------------------PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred ---------------------------CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 47778999999999999999999888765 577888899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 739 INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 739 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
++.|...++++.+ +.| +..+|..|+.+|++.|++++|.+++++|.++|+.+
T Consensus 510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999888875 566 46788999999999999999999999999888763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-40 Score=389.37 Aligned_cols=709 Identities=16% Similarity=0.078 Sum_probs=403.2
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhH--------------HH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIW--------------DE 110 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~--------------~~ 110 (806)
..++..|+..++.+... .+.+...+..++.++...|++++|...+..++...+.+....... ..
T Consensus 172 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 172 ENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566666666665422 233445566666666666666666666666655443322110000 00
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+.......+.++.........+...|++++|+..|+.+.+.++. +...+..+...+...|++++|...|+++.+.. +.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~ 327 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PN 327 (899)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 00111112233334444444555667777777777766665422 23344455556666777777777777666543 22
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.++|+++.+..+ .+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44555566666667777777777776666553 33555666666667777777777777776665432 34555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
.+...|++++|++.++.+.+.. +........++..+.+.|++++|..+++.+.... +.+..++..+...|...|+++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHH
Confidence 6666777777777776666542 1223344455566666677777777766666542 335556666666666667777
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+. .+..++..+...+.+.|+.++|...++++.
T Consensus 483 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 483 KAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776665543 34445556666666666777777777766665432 245556666666666667777776666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
... +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 542 2344555666666666677777777666666542 3455666666666666677777777666666553 334556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
+..+..++...|++++|...++.+ .. ..+.+...+..++..+...|++++|.++++.+.+.+ +.+...+
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRA---------LE-LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---------Hh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 666666666667777776666655 11 122345566666666666666666666666666553 3345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh---
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV--- 667 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~--- 667 (806)
..+...+...|++++|.+.|+++.+.+ |+..++..++.++.+.|++++|.+.++++.+..+..............
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 666666666666667766666666642 333555566666666666666666666666543221000000011100
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
+.......+..... ..++++.+++.++..+...|+ .+|+..++++.+ ..|+. .++..++.++...|++++|.+++
T Consensus 785 ~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 860 (899)
T TIGR02917 785 DYDKAIKHYRTVVK-KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLL 860 (899)
T ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00111111111110 112345555666666666666 556666666655 34443 24555566666666666666666
Q ss_pred HHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 747 DEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 747 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+++++.+. .++.++..++.+|.+.|+.++|.+++++|+
T Consensus 861 ~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 861 RKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66665331 155566666666666666666666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-39 Score=383.32 Aligned_cols=727 Identities=14% Similarity=0.041 Sum_probs=594.1
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhH--------------HH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIW--------------DE 110 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~--------------~~ 110 (806)
..+++.|...|+-+.... +.+..++..++.++...|++++|..++..++...+......... ..
T Consensus 138 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 138 LGQLELAQKSYEQALAID--PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 468999999999886432 23456788999999999999999999999987655432211111 11
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
+.......+.++.++..++..+...|++++|...++.+.+..+. +...+......+...|++++|...|+++.+.+..
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~- 293 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE- 293 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-
Confidence 12222335667788889999999999999999999999887543 4455555666778899999999999999886422
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+..... .+...+..+..
T Consensus 294 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 371 (899)
T TIGR02917 294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGE 371 (899)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 23445556677889999999999999998864 44677788899999999999999999999988654 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
.+.+.|++++|.+.|+++.+. .+.+...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|+++
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 999999999999999999875 3446677888889999999999999999999887543 4456677888999999999
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
+|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998753 6678899999999999999999999999998864 2355677888899999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037510 431 KRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIIT 510 (806)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 510 (806)
... +.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 864 3477889999999999999999999999998874 4567788889999999999999999999998765 567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH
Q 037510 511 YRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY 590 (806)
Q Consensus 511 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~ 590 (806)
|..++.++...|++++|...++.+. .. .+.+...+..++..+.+.|++++|...++++.+.. +.+..++
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~---------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLL---------AL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------Hh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 9999999999999999999999882 22 23456778889999999999999999999998863 4457889
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhh---h
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAIN---V 667 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~---~ 667 (806)
..++..+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...++++...++.++.. ....... .
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHHCC
Confidence 999999999999999999999999874 5677888889999999999999999999999887554221 1111111 1
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGYAAVGDINEAFNLR 746 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 746 (806)
+.......+..... ..+.+..++..++..|...|+.++|.+.|+++.+ ..|+ ..+++.++..+...|+ .+|+.++
T Consensus 751 ~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 751 NTAEAVKTLEAWLK-THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 22222222333222 2356788999999999999999999999999998 4565 4689999999999999 8899999
Q ss_pred HHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 747 DEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 747 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
+++.+. .| ++..+..++.++...|++++|.++++++.+.+.. +..++..+..++++
T Consensus 827 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 827 EKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 999984 45 6677888999999999999999999999986543 78888888877764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.6e-29 Score=295.21 Aligned_cols=640 Identities=14% Similarity=0.065 Sum_probs=427.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhh
Q 037510 71 YCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGK 150 (806)
Q Consensus 71 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (806)
....+++....++.+.|.+.|..+....+ -+++++..+++.+.+.|+.++|.+.+++..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p--------------------~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~ 90 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP--------------------NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ 90 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC--------------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 44556666777777777777776655432 2356666677777777777777777777776
Q ss_pred cCCCcChhhH----------------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChhHHHH
Q 037510 151 YGCIPSLRSC----------------NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVF-TCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 151 ~~~~~~~~~~----------------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 213 (806)
..+. +...+ ..+...+...|++++|+..|+++.+.+ +|+.. ............|+.++|++
T Consensus 91 ~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~ 168 (1157)
T PRK11447 91 LAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAIN 168 (1157)
T ss_pred hCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHH
Confidence 6532 22221 223445667777777777777776543 22221 11111111223477777777
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------C---hhhHHHHHHHHHh
Q 037510 214 FVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR----------------T---AVTYTTLTKGYCK 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------------~---~~~~~~li~~~~~ 274 (806)
.++++.+.. +.+...+..+...+...|+.++|.+.++++....... + ...+...+..+-.
T Consensus 169 ~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~ 247 (1157)
T PRK11447 169 QLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSD 247 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCC
Confidence 777777663 3355666777777777777777777777775532100 0 0011111111222
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
....+.|...+.+.... ...|+.. .......+...|++++|+..|++.++..+. +...+..+...|.+.|++++|+.
T Consensus 248 ~~~~~~A~~~L~~~~~~-~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~ 324 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQ-LADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVA 324 (1157)
T ss_pred chHHHHHHHHHHHHHHh-ccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 22344555555554433 1222211 123345667788899999999888876433 67788888888888999999999
Q ss_pred HHHHHhhCCCCCCh---hcHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 355 VLRCMGDWNLRPDS---FSFN------------TLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 355 ~~~~~~~~~~~~~~---~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
.|++..+.. |+. ..|. .....+.+.|++++|...|+++++... .+...+..+...+...|++
T Consensus 325 ~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 325 QFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 988877653 321 1121 223456678899999999998887632 2455677788888889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--------CcHHHHHHHHHHHHhcCCHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFY--------KNTITFNTMIKGLCKMGKMTE 491 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~ 491 (806)
++|++.|+++++.. +.+...+..+...|. .++.++|...++.+...... .....+..+...+...|++++
T Consensus 402 ~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 402 AAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999888753 234556666666664 45778888887665432100 011234456677788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 037510 492 AQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSL 571 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 571 (806)
|+..+++..+.. +.+...+..+...+.+.|++++|...++.+ ... .+.+...+..+...+...++.++|
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a---------l~~-~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL---------AQQ-KPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------HHc-CCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999988875 445677788888899999999999998877 221 122444455555666778889999
Q ss_pred HHHHHHHHHCCCCCCHh---------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 572 VDLLAEMQTMGLYPNIV---------TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 572 ~~~~~~~~~~g~~p~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
...++.+......++.. .+..+...+...|+.++|.++++. .+.+...+..+...+.+.|++++|+
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 88887764332222211 123456678889999999998872 2456667788889999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
..++++++..+ .+..++..++..|...|++++|++.++++.+ ..|+
T Consensus 624 ~~y~~al~~~P--------------------------------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~ 669 (1157)
T PRK11447 624 AAYQRVLTREP--------------------------------GNADARLGLIEVDIAQGDLAAARAQLAKLPA--TAND 669 (1157)
T ss_pred HHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCC
Confidence 99999988753 2677888999999999999999999998887 6676
Q ss_pred HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC
Q 037510 723 NF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLV--P---NIATYNSLVSGLCNSGELDRAKRLFCKLR-QKGLTP 791 (806)
Q Consensus 723 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p 791 (806)
.. ++..++.++...|++++|.+++++++...-. | +...+..+...+...|++++|+..+++.. ..|+.|
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 54 6778889999999999999999999874211 1 12456667788899999999999999865 345544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.5e-29 Score=291.83 Aligned_cols=658 Identities=13% Similarity=0.027 Sum_probs=475.9
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTV 124 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (806)
+++++.|...+.-+... -+-++..+..++.++.+.|+.++|...++.+.+..|++..... +...+.-...+...
T Consensus 41 ~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~----~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 41 THREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS----SRTTMLLSTPEGRQ 114 (1157)
T ss_pred hCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH----HHHHHHhcCCchhh
Confidence 56899999888877632 2234677889999999999999999999999988665432211 11111222334445
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR-SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
...+.+.+.+.|++++|++.|+.+.+.++. +.. ............|+.++|+..|+++.+.. +-+...+..+...+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 567778899999999999999999986532 322 22122222234699999999999999864 335667778889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCc----------------C---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh
Q 037510 204 KEKSMEKALDFVKEMENLGFEL----------------N---VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT 264 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (806)
..|+.++|++.++++.+..... + ...+...+..+-.....+.|...++........|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~- 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR- 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-
Confidence 9999999999999987642110 0 0011111222222223445556665554432223222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHH-------
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN-LLIC------- 336 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------- 336 (806)
.......+...|++++|+..|++..+. .+.+...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 123456778899999999999999886 344778899999999999999999999999998654321 1111
Q ss_pred -----HHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 037510 337 -----NSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLK 411 (806)
Q Consensus 337 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 411 (806)
......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|++.++... .+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 223456778999999999999998874 45667788899999999999999999999998632 23455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVC--------PNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGL 483 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 483 (806)
.+. .++.++|..+++.+...... .....+..+...+...|++++|++.|+++++.. +.+...+..+...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 664 56789999888765432100 012345567788899999999999999999874 44677788899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAF 563 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 563 (806)
.+.|++++|...++++.+.. +.+...+..+...+...+++++|...++.+......+.+...........+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998764 44566666666667789999999999887632111111111000011122334667788
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANI 643 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 643 (806)
..|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|++++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999872 24556677788889999999999999999999863 4468889999999999999999999
Q ss_pred HHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC--CC
Q 037510 644 FLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF--SP 721 (806)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p 721 (806)
.++.+.+... .+..++..+..++...|++++|.++++++++... .|
T Consensus 659 ~l~~ll~~~p--------------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPATAN--------------------------------DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhccCC--------------------------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9998876532 2455777788899999999999999999988421 12
Q ss_pred ---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 037510 722 ---DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-INLVP 756 (806)
Q Consensus 722 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 756 (806)
+...+..++..+...|++++|++.|++++. .|+.|
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 123666778999999999999999999975 45554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.3e-25 Score=244.66 Aligned_cols=650 Identities=12% Similarity=0.027 Sum_probs=447.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHh
Q 037510 36 LLDSVLQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAY 115 (806)
Q Consensus 36 ~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 115 (806)
+....+...+.+++.|+..|+-+.... +.+..++..++.++...|++++|...+++.++..|++
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n-------------- 111 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD-------------- 111 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--------------
Confidence 445555555688999999999987433 2236778999999999999999999999988764422
Q ss_pred hccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHH--------HHHcCChHHHHHHHHHHHHCC
Q 037510 116 KEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSN--------LVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~A~~~~~~m~~~~ 187 (806)
...+..+ +..++.++|+.+++++.+..+. +..++..+... |.+.+ +|...++ .....
T Consensus 112 ------~~~~~~L----a~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~ 176 (987)
T PRK09782 112 ------ARLERSL----AAIPVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFA 176 (987)
T ss_pred ------HHHHHHH----HHhccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhC
Confidence 3333333 2228999999999999987643 45566555555 65554 4444444 33333
Q ss_pred CCCCHhHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChhhH
Q 037510 188 IVPDVFTCSIV-VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVS-LGDLNGAKRVLEWTCEKGISRTAVTY 265 (806)
Q Consensus 188 ~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~ 265 (806)
..|+..+.... ...|.+.|++++|++++.++.+.+ +.+......|..+|.. .++ +.+..+++. .++.++..+
T Consensus 177 ~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~ 250 (987)
T PRK09782 177 ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSR 250 (987)
T ss_pred CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHH
Confidence 44455555555 889999999999999999999987 3456667778788888 477 888887553 233588899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCC-hhHHHHHHHHH
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD-EAIRVLNEMLKTGLEMN-LLICNSLINGY 343 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 343 (806)
..++..|.+.|+.++|.++++++.......|+..++.-+ +.+.+... .|..-|.+ + ..++ ....-.++..+
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~ 323 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVL 323 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654444666555544 33433332 11111111 0 1111 11233347778
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDG--YCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
.+.++++-++++.. +.|.... ..++. ....+...++...++.|.+.. +-+.....-+.-...+.|+.++
T Consensus 324 ~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 324 LKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHH
Confidence 88888886666532 2333332 22222 223466777777777777652 1133444444445567888888
Q ss_pred HHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH-------------------------HHHHHHCCCCC
Q 037510 422 ALHLWLMMLKR-C-VCPNEVGYCTLLDILFNKGD---FYGAVKL-------------------------WNNILARGFYK 471 (806)
Q Consensus 422 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~ 471 (806)
|..+++..... + ...+......++..|.+.+. ...+..+ +...... .++
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~ 473 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSP 473 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCC
Confidence 98888888763 1 22234444567777777655 2222222 2222221 133
Q ss_pred --cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC
Q 037510 472 --NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV 549 (806)
Q Consensus 472 --~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 549 (806)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++.+ ... .
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka---------~~~--~ 539 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKI---------SLH--D 539 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHH---------hcc--C
Confidence 56677777777766 78888999888887763 66555444555567899999999999876 222 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
|....+..+...+.+.|+.++|...+++..+.. +++...+..+...+...|++++|...+++.++. .|+...+..+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 334445667778888999999999999988764 222333333444455669999999999999876 46788888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
.++.+.|++++|...+++++...+. +...++.++.++...|++++|++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd--------------------------------~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPN--------------------------------NSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999887533 67788889999999999999999
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 710 IFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
.|++.++ ..|+.. .+..++.++...|++++|+..++++++ +.|+. .+.........+..+++.|.+-+++...
T Consensus 665 ~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~- 739 (987)
T PRK09782 665 MLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT- 739 (987)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh-
Confidence 9999998 778764 888999999999999999999999998 56744 5666777778888888888888877765
Q ss_pred CCCCCHh
Q 037510 788 GLTPTVV 794 (806)
Q Consensus 788 g~~p~~~ 794 (806)
+.|+..
T Consensus 740 -~~~~~~ 745 (987)
T PRK09782 740 -FSFDSS 745 (987)
T ss_pred -cCccch
Confidence 555443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.7e-24 Score=241.80 Aligned_cols=581 Identities=13% Similarity=0.010 Sum_probs=412.3
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhH
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEK 210 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 210 (806)
.+...|++++|+..|+...+..+. +..++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVK 126 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChh
Confidence 344569999999999999998765 5888999999999999999999999999885 45544444444333 88999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHH
Q 037510 211 ALDFVKEMENLGFELNVVTYNSLIDG--------YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL-TKGYCKQHKMEEA 281 (806)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a 281 (806)
|..+++++.+.. +-+..++..+... |.+. +.|.+.++ .....+.|+..+.... ...|.+.|++++|
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 999999999875 3345555555554 5555 55555555 3333333344444444 8999999999999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCK-VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
+++++++.+.+ +.+..-...+..+|.. .++ +++..+++. .+.-++.....+++.|.+.|+.++|..+++++.
T Consensus 202 i~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 99999999873 3345556667777777 466 778777554 233588899999999999999999999999876
Q ss_pred hCCCC-CChhcHHH------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 037510 361 DWNLR-PDSFSFNT------------------------------LVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTL 409 (806)
Q Consensus 361 ~~~~~-~~~~~~~~------------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 409 (806)
..... |...+|-- ++..+.+.++++.+.++. ++.|.... ..
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~ 346 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LE 346 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HH
Confidence 54211 33332221 134444555555444331 13333332 22
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCcHHHHHHHHHHHHh
Q 037510 410 LKG--LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILAR-G-FYKNTITFNTMIKGLCK 485 (806)
Q Consensus 410 l~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~ 485 (806)
+.. ....+...++...++.|... .+-+......+.-...+.|+.++|.++++..... + -..+......++..+..
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 222 22346677777777777765 2335566666666777899999999999988773 1 12233444566777766
Q ss_pred cCC---HHHHHHH-------------------------HHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037510 486 MGK---MTEAQKI-------------------------FDKMKELGCLP--NIITYRTLSDGYCKVGNLEEAFKIKNLME 535 (806)
Q Consensus 486 ~g~---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (806)
.+. ..++..+ +...... .++ +...|..+..++.. ++.++|...+....
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 655 2333222 1112211 134 56777777777766 78888888776552
Q ss_pred hcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH
Q 037510 536 RREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 615 (806)
...|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++.++
T Consensus 504 -----------~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 504 -----------QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred -----------HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12244433444555567899999999999887654 45555566777778889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH
Q 037510 616 KGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI 695 (806)
Q Consensus 616 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 695 (806)
.+ +++...+..+...+.+.|++++|...+++.++.. |+...+..++
T Consensus 571 l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---------------------------------P~~~a~~~LA 616 (987)
T PRK09782 571 RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---------------------------------PSANAYVARA 616 (987)
T ss_pred cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---------------------------------CCHHHHHHHH
Confidence 64 3333444444445556699999999999988764 4566889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGE 773 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 773 (806)
.++.+.|++++|+..|++.++ ..|+.. .++.++.++...|++++|++.++++++ +.| ++..+..+..++...|+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999 789875 889999999999999999999999999 556 67788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 037510 774 LDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 774 ~~~A~~~~~~m~~~g~~p~~ 793 (806)
+++|...+++..+ +.|+.
T Consensus 693 ~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 693 MAATQHYARLVID--DIDNQ 710 (987)
T ss_pred HHHHHHHHHHHHh--cCCCC
Confidence 9999999999988 67764
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.2e-21 Score=197.37 Aligned_cols=663 Identities=16% Similarity=0.117 Sum_probs=454.8
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHH-----------cCC
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQ-----------KGM 137 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~-----------~g~ 137 (806)
..|..++.-+.+.|++++...+|+.....+........ ... -..++.+...|.. ...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~--~~~----------~~a~~~laay~s~~a~kek~~~~k~e~ 109 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVK--SDQ----------MKALDILAAYYSQLAMKEKKKDEKDEL 109 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchH--HHH----------HHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 56788899999999999999999887522111110000 000 0112222222211 122
Q ss_pred hhhHHHHHHHhhhcCCCcC-hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 037510 138 LKNALHVFDNMGKYGCIPS-LRSCNCLLSNLVKNGE--GYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDF 214 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 214 (806)
+..|.-+|+..-+.....+ ....... .|...|. .+.|...|...++.. ++|.-.+-.-.......|++..|+.+
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~y 186 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKY 186 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHH
Confidence 3445555555443321111 1111111 2223333 588999999888753 34444443334445577899999999
Q ss_pred HHHHHHcC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 037510 215 VKEMENLG--FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK---QHKMEEAENMLRRMK 289 (806)
Q Consensus 215 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~ 289 (806)
|....... .+||+. -.+..++.+.|+.+.|...|....+.++ -++.++..|.-.-.. ...+..+..++...-
T Consensus 187 yk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay 263 (1018)
T KOG2002|consen 187 YKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAY 263 (1018)
T ss_pred HHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 99976653 334443 3345677899999999999999998653 233333333322222 234567777777776
Q ss_pred hcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 290 EEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLE--MNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 290 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
...+ -++...+.|.+.|.-.|+++.+..+...+...... .-...|..+..+|-..|++++|...|.+..+.. ++
T Consensus 264 ~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d 339 (1018)
T KOG2002|consen 264 KENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--ND 339 (1018)
T ss_pred hhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CC
Confidence 6533 46667888999999999999999999988876321 123458889999999999999999998877653 44
Q ss_pred h--hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhH
Q 037510 368 S--FSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG----DVDEALHLWLMMLKRCVCPNEVGY 441 (806)
Q Consensus 368 ~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 441 (806)
. ..+.-+...+.+.|+++.+...|+...+.. +.+..|...|...|...+ ..+.|..++....+.- +.|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHH
Confidence 3 445567889999999999999999998862 335567777777777665 5677777777777753 4477788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH----HCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNIL----ARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL---GCLPNI------ 508 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------ 508 (806)
..+...+....-+.. +..|..+. ..+..+.+...|.+...+...|.+++|...|...... ...+|.
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 887777765544443 77666554 3455577888999999999999999999999988654 112222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
.+-..+....-..++.+.|.+.|..+.. . .+.-+..|-.++......+...+|...+.+..... ..++.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilk---------e-hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ 565 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILK---------E-HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN 565 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHH---------H-CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence 2233455666677899999999998732 1 22224555555555555678889999998887643 44556
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCC
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEK-GFSPNVAICSKLVSTLCR------------LGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p 655 (806)
.++.+...+.+...+..|.+-|....+. ...+|.....+|++.|.+ .+..++|+++|.++++.++.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 6666776777888888888877766653 223677777777775542 24567888888888877643
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
|..+-|.++-+++..|++.+|..+|.+..+.. .-...+|-.++.+|..
T Consensus 645 -------------------------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 645 -------------------------------NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred -------------------------------hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHH
Confidence 77788899999999999999999999999953 2234589999999999
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 736 VGDINEAFNLRDEMLKI-NLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+|+|..|++.|+...+. .-..++.....|..++.+.|++.+|++++............+-+|..+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999874 333477888999999999999999999999887733333345555444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1e-20 Score=196.70 Aligned_cols=599 Identities=15% Similarity=0.103 Sum_probs=434.7
Q ss_pred hhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 037510 138 LKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG--IVPDVFTCSIVVNAYCKEKSMEKALDFV 215 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 215 (806)
++.|...|..+.+..+ +|+..+-.-.......|++..|+.+|...+... ..||+. -.+..++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5899999999888654 466666555666678899999999999977643 344543 23446667999999999999
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 216 KEMENLGFELNVVTYNSLIDGYVSLG---DLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
....+... -++.++..|.-.-.... .+..+..++...-.... .|++..+.|.+-|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 99998642 23444444433333333 35566666666655443 578899999999999999999999999888762
Q ss_pred CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH
Q 037510 293 DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF 371 (806)
Q Consensus 293 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 371 (806)
... .-...|..+..+|...|++++|...|.+..+....--+..+.-|..+|.+.|+++.+...|+.+.+.. +.+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHH
Confidence 111 12345888999999999999999999998877543335566678899999999999999999988764 5556677
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCChhhHHH
Q 037510 372 NTLVDGYCREC----DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML----KRCVCPNEVGYCT 443 (806)
Q Consensus 372 ~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ 443 (806)
..|...|...+ ..+.|..++.+..+.- +.|...|..+...+....-+ .++.+|..+. ..+..+.....+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 77777777665 4577777777777653 33667777777776655444 3477666554 3555678889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037510 444 LLDILFNKGDFYGAVKLWNNILAR---GFYKNT------ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTL 514 (806)
Q Consensus 444 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 514 (806)
+...+...|+++.|...|...... ...++. .+-..+...+-..++.+.|.+.+....+.. +.-...|..+
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHh
Confidence 999999999999999999988765 112222 223345666667789999999999998874 3334556555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHhHHHHH
Q 037510 515 SDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG-LYPNIVTYGAL 593 (806)
Q Consensus 515 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l 593 (806)
+......+...+|...++.. -.....++..+..+...+.+...+..|.+-|....+.- ..+|+.+...|
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~----------l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDA----------LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHH----------HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 54444567788888888876 22334556667778888888888888888776665432 23576766666
Q ss_pred HHHHHc------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhh
Q 037510 594 ISGWCD------------AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 594 ~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
.+.|.+ .+..++|+++|.+.++.. +-|...-+.++-+++..|++.+|..+|.+..+....
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------- 678 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------- 678 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-------
Confidence 665532 245678999999999864 557888899999999999999999999998875421
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHH
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF-SPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~ 740 (806)
+..+|-.++++|..+|++..|+++|+...+.-. .-+....+.|+.++.+.|++.
T Consensus 679 -------------------------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 679 -------------------------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred -------------------------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 334888899999999999999999999887633 334558889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-Chh-cHHHHHHH------------------HHhcCCHHHHHHHHHHHHHCCCC
Q 037510 741 EAFNLRDEMLKINLVP-NIA-TYNSLVSG------------------LCNSGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p-~~~-~~~~l~~~------------------~~~~g~~~~A~~~~~~m~~~g~~ 790 (806)
+|.+.+..+.. +.| |+. -+|..+.. ....+..++|.++|.+|...+-.
T Consensus 734 eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999888 445 332 33322211 11235578899999999875443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-23 Score=206.76 Aligned_cols=452 Identities=16% Similarity=0.156 Sum_probs=274.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
...|.+-..+.|++++|++.-...-+.+ +.+......+-..+.+..+++...+--....+.... -..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHH
Confidence 5566777778888888887766655442 222333334445566666666655554444444322 4557777777777
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH-HHHHHHHhcCCHHHHH
Q 037510 345 KLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN-TLLKGLCRVGDVDEAL 423 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~ 423 (806)
..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+...|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777777653 345667777777777777777777777777664 45443332 2333444467777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN-TITFNTMIKGLCKMGKMTEAQKIFDKMKEL 502 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 502 (806)
..+.+.++... .-...|+.|...+..+|+...|+..|++.++.+ |+ ...|-.|...|...+.+++|...+.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77776666421 134466667777777777777777777766642 22 345556666666666677777666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTM 581 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 581 (806)
. +...+.+..+...|...|..|.|+..|++. ....|+ ...|+.+..++-..|++.+|...+......
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykra-----------l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRA-----------LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHH-----------HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 3 233456666666666667777776666644 223343 456666666666666666666666666654
Q ss_pred CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhh
Q 037510 582 GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 660 (806)
. .-...+.+.|...|...|.+++|..+|....+- .|. ....+.|...|-.+|++++|+..+++.+...+.
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~------ 420 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT------ 420 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch------
Confidence 1 222445566666666666666666666666653 332 445566666666666666666666666654321
Q ss_pred hhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCH
Q 037510 661 ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDI 739 (806)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~ 739 (806)
-...|+.++..|-..|+.+.|++.+.+.+. +.|.-. +++.|+..|-..|++
T Consensus 421 --------------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 421 --------------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred --------------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCc
Confidence 233566666666666666666666666666 566653 666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHH
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 776 (806)
.+|++-|+.+++ ++|| +..|..++.++.-..++.+
T Consensus 473 ~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 473 PEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcccc
Confidence 666666666666 5564 3455555555444444333
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.5e-23 Score=203.42 Aligned_cols=448 Identities=16% Similarity=0.161 Sum_probs=361.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHH
Q 037510 230 YNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYC 309 (806)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 309 (806)
...|.+-..+.|++++|++.-..+-..+. .+....-.+-.++.+..+.+....--....+. .+.-..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHH
Confidence 56677778899999999998887766543 24444455567777777887776654444443 3445678999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH-HHHHHHHHhcCCHHHHH
Q 037510 310 KVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF-NTLVDGYCRECDMTEAF 388 (806)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~ 388 (806)
..|++++|+.+++.+++..++ ....|..+..++...|+.+.|...|.+..+. .|+.... +.+...+-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999999987544 6778999999999999999999999988875 4654433 33444555689999999
Q ss_pred HHHHHHHHCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 389 RLCAEMLRQGIEPS-VVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPN-EVGYCTLLDILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 389 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (806)
..+.+.++. .|. ...|+.|...+-..|+...|++.|++.++. .|+ ...|..|...|...+.++.|+..|.....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 999888875 343 467899999999999999999999999885 444 56899999999999999999999998887
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhc
Q 037510 467 RGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKE 546 (806)
Q Consensus 467 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 546 (806)
.. +.....+..+...|..+|.++-|+..+++.++.. +.=...|+.+..++-..|++.+|...|++. .
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka-----------L 347 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA-----------L 347 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH-----------H
Confidence 63 3356677778888999999999999999999874 223688999999999999999999999876 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HH
Q 037510 547 AIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN-VA 623 (806)
Q Consensus 547 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 623 (806)
...|+ ....+.|...+...|.+++|..+|....+- .|. ....+.|...|-+.|++++|+..|++.++- .|+ ..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAd 423 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFAD 423 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHH
Confidence 23443 677888999999999999999999988875 444 456888999999999999999999999874 665 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|+.+...|-..|+++.|.+.+.+++...+. -...++.|...|...|+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt--------------------------------~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPT--------------------------------FAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcH--------------------------------HHHHHhhHHHHhhccCC
Confidence 8899999999999999999999999987533 34578899999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD 738 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 738 (806)
..+|++-+++.++ +.||.. +|..++.++---.+
T Consensus 472 i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 472 IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred cHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence 9999999999999 889975 77777665543333
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2e-18 Score=190.91 Aligned_cols=436 Identities=14% Similarity=0.055 Sum_probs=279.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLIN 341 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 341 (806)
...+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|+..++..++..+. +...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 345667788889999999999999988754 467778888888999999999999999998887533 5668888889
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 342 GYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 342 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
+|...|++++|+.-|......+ ..+......++..+.. ..+........+.. +++...+..+.. +........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 9999999999998887665432 1121111222221111 22333333333331 223333333322 222222222
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHH---HhcCChhHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPN-EVGYCTLLDIL---FNKGDFYGAVKLWNNILARG--FYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
...-+....+. .+. ...+..+...+ ...+++++|.+.|++....+ .+.....++.+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22112111111 111 11111111111 23467888888888888754 123445677777777888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLL 575 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
+++..+.. +.....|..+...+...|++++|...++.. ... .+.+...+..+...+...|++++|...|
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a---------l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKA---------LKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH---------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88887764 334567777788888888888888888876 222 2334677777888888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 037510 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 576 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 655 (806)
++..+.. +.+...+..+...+.+.|++++|+..|++.++. .+.+...+..+..++...|++++|...|++.+......
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 8887753 224556666777777888888888888888765 23456777778888888888888888888877654221
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGY 733 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~ 733 (806)
+. ...+.. .++..+..+...|++++|.+++++.++ +.|+.. ++..++..+
T Consensus 501 ~~--------------------------~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 501 KP--------------------------MYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLL 552 (615)
T ss_pred cc--------------------------ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 00 001111 122222233446788888888888877 556654 677788888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~ 751 (806)
.+.|++++|+++|+++.+
T Consensus 553 ~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888888877
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.9e-18 Score=189.63 Aligned_cols=442 Identities=12% Similarity=-0.020 Sum_probs=301.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID 306 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 306 (806)
...+......+.+.|++++|...|++..+.. |+...|..+..+|.+.|++++|++.++...+. .+.+...+..+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 3456678889999999999999999998754 67888999999999999999999999999876 3445678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHH
Q 037510 307 GYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTE 386 (806)
Q Consensus 307 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 386 (806)
++...|++++|+.-|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. +........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 999999999999988877655322222 22222222222 12233333332221 333333333322 222222222
Q ss_pred HHHHHHHHHHCCCCCCc-chHHHHHHHH---HhcCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChhHHHHH
Q 037510 387 AFRLCAEMLRQGIEPSV-VTYNTLLKGL---CRVGDVDEALHLWLMMLKRC-VCP-NEVGYCTLLDILFNKGDFYGAVKL 460 (806)
Q Consensus 387 a~~~~~~m~~~g~~~~~-~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 460 (806)
...-+.+..+ ..+.. ..+..+...+ ...+++++|...|+..++.+ ..| ....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222222111 11111 1122211111 23478999999999999865 223 456788888999999999999999
Q ss_pred HHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 037510 461 WNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540 (806)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (806)
+++.+... +.....|..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...|+..
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka------ 425 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS------ 425 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Confidence 99999863 3346688888899999999999999999998875 556889999999999999999999999977
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 037510 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP 620 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 620 (806)
... .+.+...+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++.++.....
T Consensus 426 ---l~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 426 ---IDL-DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred ---HHc-CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 222 23356778889999999999999999999998752 3357788899999999999999999999999863221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
...+..+...+. .+..+++.. + +.......+..... ..+.+..++..++..+..
T Consensus 501 -~~~~~~~~~l~~------~a~~~~~~~---~---------------~~~eA~~~~~kAl~-l~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 501 -KPMYMNVLPLIN------KALALFQWK---Q---------------DFIEAENLCEKALI-IDPECDIAVATMAQLLLQ 554 (615)
T ss_pred -ccccccHHHHHH------HHHHHHHHh---h---------------hHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHH
Confidence 112222111111 122222210 0 00011111111111 123455678999999999
Q ss_pred cCChhhHHHHHHHHHHCCCCCC
Q 037510 701 SGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
.|++++|+..|++..+ +.+.
T Consensus 555 ~g~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 555 QGDVDEALKLFERAAE--LART 574 (615)
T ss_pred ccCHHHHHHHHHHHHH--Hhcc
Confidence 9999999999999988 4454
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5.1e-20 Score=193.67 Aligned_cols=300 Identities=15% Similarity=0.116 Sum_probs=152.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc---HHHHHHHHHHHHhcCCH
Q 037510 413 LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN---TITFNTMIKGLCKMGKM 489 (806)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 489 (806)
+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555542 12333444455555555555555555555444321111 12334444444444555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
++|..+|+++.+.. +.+..++.. ++..+.+.|+++
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~--------------------------------------------la~~~~~~g~~~ 158 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQ--------------------------------------------LLEIYQQEKDWQ 158 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHH--------------------------------------------HHHHHHHhchHH
Confidence 55555555444432 223344444 444444445555
Q ss_pred HHHHHHHHHHHCCCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNI----VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFL 645 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 645 (806)
+|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.+.++++.+.. +.+...+..++..+.+.|++++|.+++
T Consensus 159 ~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 237 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEAL 237 (389)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555444443221111 123344445555666666666666665542 223445555556666666666666666
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHh
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFT 725 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 725 (806)
+++...++. ....+++.++.+|++.|++++|...++++.+ ..|+...
T Consensus 238 ~~~~~~~p~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~ 284 (389)
T PRK11788 238 ERVEEQDPE-------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADL 284 (389)
T ss_pred HHHHHHChh-------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchH
Confidence 666543211 0123455566666666666666666666665 3455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN---SGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
+..++..+.+.|++++|+.+++++++ ..|+...+..++..+.. .|+.++|..++++|.++++.|+..
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666665 24555555555555443 345666666666666555555543
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=6e-20 Score=193.15 Aligned_cols=303 Identities=18% Similarity=0.126 Sum_probs=230.8
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhc
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPD---VFTCSIVVNAYCKE 205 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~ 205 (806)
...+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445678899999999999988754 3667888888999999999999999998887532221 24567778888888
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHH
Q 037510 206 KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRT----AVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 281 (806)
|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888753 44677888888889999999999999988887654322 12355677778888888888
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
...|+++.+. .+.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|...++++.+
T Consensus 200 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 200 RALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888765 23345577777888888888888888888888764433345677888888888888888888888877
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCh
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR---VGDVDEALHLWLMMLKRCVCPNE 438 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 438 (806)
. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 5 456666677888888888888888888888775 5777777777776664 45788888888888876665554
Q ss_pred h
Q 037510 439 V 439 (806)
Q Consensus 439 ~ 439 (806)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 4
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.4e-18 Score=187.94 Aligned_cols=359 Identities=11% Similarity=0.019 Sum_probs=264.6
Q ss_pred HHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHH
Q 037510 343 YCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420 (806)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 420 (806)
+.+..+++.-.-.|....+.. -.-+......++..+.+.|++++|..+++..+..... +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 456667776666665443321 0122334455667778889999999999888876433 3455566667777889999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMK 500 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 500 (806)
+|...++++.... +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999988863 3356678888888889999999999999888763 4456777888888889999999999888887
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 037510 501 ELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 580 (806)
... +.+...+..+ ..+...|++++|...++.+ ......++...+..+...+...|++++|...+++..+
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~---------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARAL---------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHH---------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 654 2233334333 3477889999998888876 3332223344455566778888999999999988887
Q ss_pred CCCCCCHhHHHHHHHHHHccCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 581 MGLYPNIVTYGALISGWCDAGMLNK----AFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 581 ~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
.. +.+...+..+...+...|++++ |...|+++++.. +.+...+..+...+.+.|++++|...++++.+..+.
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-- 316 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-- 316 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 63 3356677778888888888875 788888888763 346778888888888999999999999888876432
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 735 (806)
+..++..++.+|.+.|++++|+..|+++.+ ..|+.. .+..++.++..
T Consensus 317 ------------------------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 317 ------------------------------LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHH
Confidence 556777788888899999999999988888 567764 34446777888
Q ss_pred cCCHHHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLK 751 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~ 751 (806)
.|++++|+..|+++++
T Consensus 365 ~G~~deA~~~l~~al~ 380 (656)
T PRK15174 365 AGKTSEAESVFEHYIQ 380 (656)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999999999887
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.4e-17 Score=183.16 Aligned_cols=355 Identities=10% Similarity=0.010 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 037510 335 ICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLC 414 (806)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 414 (806)
-...++..+.+.|+.++|..+++...... +-+...+..++.+....|++++|...++++.+... .+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 34456677889999999999999988764 44455666677778889999999999999998632 25567888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQK 494 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 494 (806)
..|++++|...+++++... +.+...+..++..+...|++++|...++.+..... .+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999999862 33567888899999999999999999998877642 233334333 34788999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhH----
Q 037510 495 IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTS---- 570 (806)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---- 570 (806)
.++.+.+....++...+..+..++...|++++|...++.. ... .+.+...+..+...+...|++++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a---------l~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA---------LAR-GLDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH---------Hhc-CCCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 9999887653344555566678899999999999999987 322 23457788889999999999986
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
|...+++..+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+..++.+.|++++|...++++..
T Consensus 269 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 269 AAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998863 3356788899999999999999999999999863 34567788889999999999999999999987
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLI 730 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 730 (806)
.++. +...+..++.++...|+.++|...|+++.+ ..|+..
T Consensus 347 ~~P~--------------------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~------ 386 (656)
T PRK15174 347 EKGV--------------------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL------ 386 (656)
T ss_pred hCcc--------------------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc------
Confidence 6422 233455567889999999999999999999 677764
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 731 HGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..++++|...+.+.++
T Consensus 387 -----~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 387 -----PQSFEEGLLALDGQIS 402 (656)
T ss_pred -----hhhHHHHHHHHHHHHH
Confidence 2344566666666665
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=5.4e-15 Score=153.69 Aligned_cols=374 Identities=14% Similarity=0.141 Sum_probs=277.7
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHh
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNM 148 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (806)
...-..+..+-..|++++|..++.++++. .+..+..|..|...|-.+|+.+++...+-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQ--------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34444566666669999999999999865 3455778999999999999999999888776
Q ss_pred hhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH
Q 037510 149 GKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVV 228 (806)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 228 (806)
--..+. |...|..+.....+.|++++|.-.|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..
T Consensus 200 AHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~e 277 (895)
T KOG2076|consen 200 AHLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIE 277 (895)
T ss_pred HhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHH
Confidence 665543 66899999999999999999999999999975 3355555556677889999999999999999875322322
Q ss_pred HHH----HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------
Q 037510 229 TYN----SLIDGYVSLGDLNGAKRVLEWTCEKGI-SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED----------- 292 (806)
Q Consensus 229 ~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------- 292 (806)
-.. ..++.+...++-+.|.+.++.....+- ..+...++.++..|.+...++.|......+....
T Consensus 278 r~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 278 RIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 222 345667778888999999988877321 2456678899999999999999999888887620
Q ss_pred ---------------CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 293 ---------------DVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTG--LEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 293 ---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
+..++... --+.-++.+....+....+.......+ +.-++..|.-+.++|...|++.+|+.+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111112 112223344444555555555555555 444667899999999999999999999
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK---- 431 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---- 431 (806)
|..+......-+...|-.+..+|...|.+++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 9999887555567789999999999999999999999998762 22345556677788899999999999998653
Q ss_pred ----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 432 ----RCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILA 466 (806)
Q Consensus 432 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 466 (806)
.+..|+........+.+.+.|+.++-+.+-.+++.
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23445555666677788888888886666665554
No 24
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=1.7e-15 Score=157.31 Aligned_cols=626 Identities=12% Similarity=0.055 Sum_probs=398.5
Q ss_pred CCHHHHHHH--HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 037510 120 FSPTVFDMI--LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSI 197 (806)
Q Consensus 120 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 197 (806)
+++++-..| .+....+|++++|.+++.++++..+ .+..+|..|...|-.+|+.+++...+-...... +-|..-|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 444443333 3334556999999999999999875 378899999999999999999998887776654 336688888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH----HHHHHH
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTT----LTKGYC 273 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~ 273 (806)
+.....+.|++++|.-.|.+..+.. +++...+---...|.+.|+...|..-|.++....++.|..-... .++.+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886 45555555667889999999999999999998754333332333 355677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC------------------------
Q 037510 274 KQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL------------------------ 329 (806)
Q Consensus 274 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------ 329 (806)
..++-+.|.+.++......+-..+...++.++..+.+...++.|.....++.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 77888999999988887544555667888999999999999999988887776211
Q ss_pred ---CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC--CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 037510 330 ---EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN--LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVV 404 (806)
Q Consensus 330 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 404 (806)
.++..+ -.+.-++......+....+...+...+ +.-+...|.-+..++...|++.+|+.+|..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 122222 122233334444444444444444444 34456778889999999999999999999998875445677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCcHHHH
Q 037510 405 TYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILA--------RGFYKNTITF 476 (806)
Q Consensus 405 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 476 (806)
.|..+..+|...|..++|.+.|+.++... +.+...-..|...+.+.|+.++|.+.++.+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 89999999999999999999999999862 33556777888899999999999999998652 2234444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 477 NTMIKGLCKMGKMTEAQKIFDKMKELG-----CLP-----------------NIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 477 ~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
......+.+.|+.++=+.+...|+... +.| ........+.+-.+.++.....+....-
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 556677888888887666555554321 111 1111222233333333322111111000
Q ss_pred HhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCCH---hHHHHHHHHHHccCChHHHH
Q 037510 535 ERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL--YPNI---VTYGALISGWCDAGMLNKAF 607 (806)
Q Consensus 535 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~---~~~~~l~~~~~~~g~~~~A~ 607 (806)
.. .......+..- .-..+..++..+.+.+++++|..+...+.+... .++. ..-...+.+....+++..|.
T Consensus 610 ~~---~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 610 TE---FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred hh---hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 00 00001111111 113445577788888888888888887776421 1111 11223445566788888888
Q ss_pred HHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcC
Q 037510 608 KAYFDMIEK-GFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSL 683 (806)
Q Consensus 608 ~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (806)
..++.|+.. ++..+ ...|+...+...+.|+-.-=..++..+.......
T Consensus 687 ~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~---------------------------- 738 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDD---------------------------- 738 (895)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccC----------------------------
Confidence 888888753 11111 2233333333444443222222332222221110
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHH-HHHh-------cC---CHHHHHHHHHHHHHc
Q 037510 684 CVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIH-GYAA-------VG---DINEAFNLRDEMLKI 752 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~-~~~~-------~g---~~~~A~~~~~~~~~~ 752 (806)
++......++-+...+.+.-|+..+-++.. ..||....+.++. ++.. .. .+-+++..+++-.+.
T Consensus 739 ---~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l 813 (895)
T KOG2076|consen 739 ---TPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL 813 (895)
T ss_pred ---CcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 112222334445667777888887777777 6677553332221 1111 11 233455555555542
Q ss_pred C-CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 753 N-LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 753 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
. ..---.++..++++|-..|-.--|..+|++..+
T Consensus 814 R~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 814 RRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred hccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 1 111345666788888888888888888888876
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.5e-17 Score=184.20 Aligned_cols=422 Identities=12% Similarity=-0.019 Sum_probs=246.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 302 GVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++..+.. +.+...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 333444445555555555555554421 2233345555555555555555555555544432 22333444444555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037510 382 CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLW 461 (806)
Q Consensus 382 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (806)
|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..++++++.. +.+...+..+...+...+..+.|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 55555555555554431 11222 4444444555555555555555555431 112333333444444444444444444
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcCCh---HHHHHHHHH
Q 037510 462 NNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC-----KVGNL---EEAFKIKNL 533 (806)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~---~~A~~~~~~ 533 (806)
+.+.. .|+.. ... ........+.... ..+++ ++|++.++.
T Consensus 174 ~~~~~---~p~~~----------------~~l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 174 DDANL---TPAEK----------------RDL-------------EADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HhCCC---CHHHH----------------HHH-------------HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 43332 11100 000 0001111111111 11223 667777776
Q ss_pred HHhcccChhhhhcCCCCCHH-HH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHccCChHHHH
Q 037510 534 MERREILPSMEKEAIVPSID-MY----NYLISVAFKSRELTSLVDLLAEMQTMGLY-PNIVTYGALISGWCDAGMLNKAF 607 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~ 607 (806)
+.+ .....|+.. .+ ...+..+...|+.++|+..|+.+.+.+.. |+. ....+..+|...|++++|+
T Consensus 222 ll~--------~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 222 LEA--------LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHh--------hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 621 111222211 11 11133456779999999999999987532 332 2222567899999999999
Q ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCC
Q 037510 608 KAYFDMIEKGFSP---NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLC 684 (806)
Q Consensus 608 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (806)
..|+++.+..... .......+..++...|++++|...++++....+.. ... ......
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~--~~~------------------~~~~~~ 352 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF--LRL------------------YGSPTS 352 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce--Eee------------------cCCCCC
Confidence 9999988753111 13456667778899999999999999998764210 000 000001
Q ss_pred CCC---hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-Chh
Q 037510 685 VPN---YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIA 759 (806)
Q Consensus 685 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 759 (806)
.|+ ...+..++..+...|++++|++.++++.+ ..|+.. .+..++..+...|++++|++.++++++ +.| +..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~ 428 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNIN 428 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChH
Confidence 233 23556778889999999999999999998 678764 889999999999999999999999999 567 466
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
.+..++..+.+.|++++|..+++++++ ..|+...
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~ 462 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHH
Confidence 777888899999999999999999998 5666544
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=7.9e-17 Score=181.33 Aligned_cols=426 Identities=12% Similarity=0.036 Sum_probs=309.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSL 339 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (806)
.+..-..-.+.+....|+.++|++++.+.... .+.+...+..+...+.+.|++++|..++++..+..+ .+...+..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 35555566777888999999999999999763 244556789999999999999999999999988743 356778889
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCH
Q 037510 340 INGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDV 419 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 419 (806)
+..+...|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 999999999999999999998863 45556 888899999999999999999999987432 445556677888888999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH---HHHHHHH
Q 037510 420 DEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM---TEAQKIF 496 (806)
Q Consensus 420 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~ 496 (806)
+.|+..++.... .|+.. .-+ ....+....+ ..+.......+++ ++|+..+
T Consensus 167 e~Al~~l~~~~~---~p~~~---~~l-------~~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEK---RDL-------EADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHH---HHH-------HHHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 999998876554 23210 000 0000000000 0011111222333 6778888
Q ss_pred HHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC-CCHHHHHHHHHHHHhcCCHh
Q 037510 497 DKMKEL-GCLPNII-TY----RTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV-PSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 497 ~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 569 (806)
+.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+ ...+.. |+. ....+...+...|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l---------l~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL---------KAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---------hccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 888754 1122221 11 11133456779999999999988 333321 322 2223577899999999
Q ss_pred HHHHHHHHHHHCCCCC---CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYP---NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-----------SPN---VAICSKLVSTL 632 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 632 (806)
+|+..|+++.+..... .......+..++...|++++|.+.++++.+... .|+ ...+..+...+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999987653111 123456667788899999999999999987521 123 23456677888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|++++|+..++++....+ .+...+..++..+...|++++|++.++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P--------------------------------~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAP--------------------------------GNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999999987653 267789999999999999999999999
Q ss_pred HHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 713 ALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 713 ~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
++++ ..|+.. .+..++..+...|++++|..+++++++ ..|+......|
T Consensus 418 ~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 418 KAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 9999 779864 777888899999999999999999998 56755543333
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=4.5e-14 Score=141.04 Aligned_cols=581 Identities=12% Similarity=0.050 Sum_probs=351.9
Q ss_pred cCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH-------------H-
Q 037510 135 KGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVV-------------N- 200 (806)
Q Consensus 135 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~-------------~- 200 (806)
.++...|..++..+.+.++. ++..|-+-.+.--..|++..|..+..+=.+. ++.+...|.-.+ .
T Consensus 264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence 35677788888888877654 6666666655555666666666655443322 111222221111 0
Q ss_pred ---------HHHhcCC----hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037510 201 ---------AYCKEKS----MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTT 267 (806)
Q Consensus 201 ---------~~~~~g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (806)
.+++.-+ ...-..++++.++. ++.++..|-.. ....+.+.|..++.+..+.- +.+...|
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLw-- 413 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLW-- 413 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHH--
Confidence 1112111 22223344444433 22333333332 23344445666666666531 1222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCChhHHHHHHHHH
Q 037510 268 LTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEM----LKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 268 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~ 343 (806)
-+|.+..-++.|..++...++. ++.+...|.+....--..|+.+...+++++- ...|+..+...|-.=...+
T Consensus 414 --lAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 --LALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3444455667777777777664 5666666666666666677777776666543 3456666666676666667
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRP--DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
-+.|..-.+..+.......|+.. -..+|+.-...|.+.+.++-|..+|...++-- +-+...|......--..|..++
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHH
Confidence 77777777777777666665432 23466666677777777777777777766642 2244555555555555677777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE 501 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 501 (806)
...++++.... ++-....|......+...|+...|..++..+.+.. +.+...|-+-+.....+.+++.|..+|.+...
T Consensus 569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777665 33345556666666777777777777777777654 33566666677777777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 037510 502 LGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 580 (806)
. .|+...|.--+..-.-.++.++|.+++++.. ...|+ ...|..+...+-+.++++.|.+.|..-.+
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-----------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEAL-----------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-----------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 4 3566666655666666677777777776541 12233 34556666666677777777766665544
Q ss_pred CCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhh
Q 037510 581 MGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYM 660 (806)
Q Consensus 581 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 660 (806)
. ++-....|..+...-.+.|++-+|..++++..-++ +.+...|...+..=.+.|..+.|..+..++++.
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--------- 782 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--------- 782 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 3 23334456666666666677777777777776653 345666777777777777777777777666654
Q ss_pred hhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037510 661 ASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 740 (806)
++.+...|..-|...-+.++-..+.+.+++ ..-|..........+-...+++
T Consensus 783 -----------------------cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 783 -----------------------CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred -----------------------CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHH
Confidence 233556777777777777776666655544 3345555666777777778888
Q ss_pred HHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 741 EAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 741 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+|.+.|.++++ +.||. .+|..+..-+.+.|.-++-.+++.+...
T Consensus 835 kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 835 KAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 88888888887 44543 4555566667788887777778777765
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.2e-15 Score=167.64 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=168.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHH
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG-----FSPNVAICSKLVSTL 632 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~ 632 (806)
-+-++...++..++++.++.+...|.+....+-..+.++|...++.++|..+|.++.... ..++......|..++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 455778899999999999999988866555677889999999999999999999997643 123444467889999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChH-HHHHHHHHHHhcCChhhHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYV-VYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
...+++++|..+++++.+.. |....... .....+.||-. .+..++..+...|++.+|++.+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~--p~~~~~~~----------------~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQT--PYQVGVYG----------------LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred HhcccHHHHHHHHHHHHhcC--CcEEeccC----------------CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998742 21110000 00011123333 3445677788999999999999
Q ss_pred HHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 712 SALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 712 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
+++.. ..|... ....++..+...|++.+|.+.++.+.. +.| +..+....+.++...|++.+|..+.+++.+ .
T Consensus 440 e~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~ 513 (822)
T PRK14574 440 EDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVIS--R 513 (822)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 99998 678664 889999999999999999999988877 567 566778888999999999999999999987 6
Q ss_pred CCCHhhHH
Q 037510 790 TPTVVTYN 797 (806)
Q Consensus 790 ~p~~~~~~ 797 (806)
.|+...-.
T Consensus 514 ~Pe~~~~~ 521 (822)
T PRK14574 514 SPEDIPSQ 521 (822)
T ss_pred CCCchhHH
Confidence 77755433
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=5.2e-15 Score=162.74 Aligned_cols=451 Identities=13% Similarity=0.052 Sum_probs=246.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhhHHHH--HHHHHhc
Q 037510 201 AYCKEKSMEKALDFVKEMENLGFELNV--VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISR-TAVTYTTL--TKGYCKQ 275 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l--i~~~~~~ 275 (806)
...+.|+++.|+..|+++.+.. |+. .++ .++..+...|+.++|+..+++... | +...+..+ ...+...
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHc
Confidence 3457777777777777777653 332 233 666667777777777777777762 2 22222222 4566666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|+..
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 77777777777777652 334455556666777777777777777777665 33444444444444344555557777
Q ss_pred HHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 356 LRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
++++.+.. +.+...+..+..++.+.|-...|.++..+ .|+..+-...... ..+.+.+..+.. ..
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a----~~ 255 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMA----VL 255 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhc----cc
Confidence 77777653 44555566666677777776666655544 2222221111110 011111111111 00
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNNILAR--GFYKNTIT----FNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNII 509 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 509 (806)
++..- -. +---.+.|+.-++.+... ..++.... .--.+.++...|+..++++.++.+...+.+.-..
T Consensus 256 ~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y 328 (822)
T PRK14574 256 PTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY 328 (822)
T ss_pred ccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence 00000 00 000123444445554442 11211111 1234556777888888888888888777554455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC------
Q 037510 510 TYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL------ 583 (806)
Q Consensus 510 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~------ 583 (806)
+-..+.++|...+++++|..++..+....- ......++......|..++...+++++|..+++.+.+...
T Consensus 329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~----~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 329 ARRWAASAYIDRRLPEKAAPILSSLYYSDG----KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhccc----cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 777788888888888888888887721100 0001233444456777788888888888888888776311
Q ss_pred -----CCC--Hh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 037510 584 -----YPN--IV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVP 655 (806)
Q Consensus 584 -----~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 655 (806)
.|+ -. .+..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|...++.+...+ |
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA--P 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--C
Confidence 111 11 12223444555566666666666555442 3355555555555555566666665554444332 1
Q ss_pred ChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 037510 656 DLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF 724 (806)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 724 (806)
+ +..+....+.++...|++++|..+.+.+.+ ..|+..
T Consensus 482 ~------------------------------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~ 518 (822)
T PRK14574 482 R------------------------------SLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDI 518 (822)
T ss_pred c------------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCch
Confidence 1 333444455555555556666555555555 445544
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=4.1e-13 Score=134.31 Aligned_cols=599 Identities=13% Similarity=0.038 Sum_probs=453.7
Q ss_pred CCCchHHHHHHHHHHhhhhcCCCch---hh-----------HHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHH
Q 037510 81 ARMFDETRAFLYELVGLCKNNYAGF---LI-----------WDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFD 146 (806)
Q Consensus 81 ~~~~~~a~~~l~~~~~~~~~~~~~~---~~-----------~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (806)
.++...|+.+|.++.+..|.++++- .. -+.+.+....|+-+.+++.--+ +..-.+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 3566778888888887766554431 11 1233444455566666654332 4456666777777
Q ss_pred HhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC
Q 037510 147 NMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELN 226 (806)
Q Consensus 147 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 226 (806)
...+..+ .++..|---... ..+...-..++.+.++. ++.++..|-. -....+.+.|+-++.+..+. ++.+
T Consensus 340 ~Avr~~P-~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRFLP-TSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHhCC-CChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccch
Confidence 7766532 244444332221 22233344566666664 3334444443 33556667799999988875 3334
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCCChHhHHH
Q 037510 227 VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKE---EDDVIVDEYAYGV 303 (806)
Q Consensus 227 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 303 (806)
.. |.-+|++..-++.|.+++++..+. ++.+...|.+-...--.+|+.+....++.+-.. ..|+..+...|..
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 44 444567778899999999999875 556788898888877889999999988877442 3478888888988
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEM--NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE 381 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 381 (806)
=...|-+.|..--+..+....+..|+.- -..+|+.-.+.|.+.+.++-|+.+|....+. ++.+...|...+..--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 8899999999999999999998887753 2458888889999999999999999988875 366777888888877788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037510 382 CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLW 461 (806)
Q Consensus 382 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 461 (806)
|..++...+|++....- +-....|......+-..|++..|..++....+.. +.+...|...+.......+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999999999862 2244556666677788899999999999999874 337788999999999999999999999
Q ss_pred HHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 037510 462 NNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN-IITYRTLSDGYCKVGNLEEAFKIKNLMERREIL 540 (806)
Q Consensus 462 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 540 (806)
.+.... .++..+|.--+....-.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~------- 710 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ------- 710 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh-------
Confidence 999875 577888877777777889999999999999886 355 46788888999999999999998873
Q ss_pred hhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 037510 541 PSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFS 619 (806)
Q Consensus 541 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 619 (806)
.....| .+..|-.|...--+.|.+-.|..+++...-++ +-+...|...|..-.+.|+.+.|..+..++++. ++
T Consensus 711 ----G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 711 ----GTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred ----ccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 333344 56778888888889999999999999998774 446788999999999999999999999999886 45
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH
Q 037510 620 PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC 699 (806)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 699 (806)
.+...|..-|....+.++-..+...+++. ..|+.+.-.+...+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkc------------------------------------e~dphVllaia~lfw 828 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKC------------------------------------EHDPHVLLAIAKLFW 828 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhc------------------------------------cCCchhHHHHHHHHH
Confidence 56666766666666666544444444332 346778888999999
Q ss_pred hcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 700 KSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
...+++.|.+.|.+..+ ..||. .+|..+..-+.+.|.-+.-.+++.+... .+|..
T Consensus 829 ~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 99999999999999999 77887 4898899999999988888888888877 56644
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=8.3e-14 Score=132.15 Aligned_cols=326 Identities=18% Similarity=0.236 Sum_probs=147.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--hcCChhHH-HHHHHHHHHcCCCcCHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC--KEKSMEKA-LDFVKEMENLGFELNVVTYNS 232 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~ 232 (806)
.+++-|.|+.. ..+|....+.-+|+.|...|+..+...-..+++.-| ...++.-| ++.|-.|...| +.+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 44556666553 456677777778888877776655554444443322 22222211 22222333322 1111111
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG 312 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 312 (806)
+.|++.+ -+|+..+ .+..+|..+|.++|+-...+.|.+++++.... ..+.+..+||.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~P-----KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-----KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred ------ccccHHH--HHHhhcC-----CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh--
Confidence 2232222 2222221 24455555555555555555555555555444 344455555555443221
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
....++..+|....+.||..|+|+++.+..+.|+++.|.. .|++++.
T Consensus 255 --~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~-------------------------------aalqil~ 301 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK-------------------------------AALQILG 301 (625)
T ss_pred --hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-------------------------------HHHHHHH
Confidence 1114445555555555555555555555555554433221 2334444
Q ss_pred HHHHCCCCCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 393 EMLRQGIEPSVVTYNTLLKGLCRVGDVDE-ALHLWLMMLK----RCVCP----NEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 393 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
+|++.|+.|...+|..++..+++.++..+ +..+..++.. +.+.| |...+...+..|.+..+.+.|.++-.-
T Consensus 302 EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 302 EMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455555555555555554444444322 2222222221 11111 222333344444444444444443332
Q ss_pred HHHCC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 464 ILARG----FYKN---TITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 464 ~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
..... +.++ ..-|..+....|+....+.-...++.|+-.-+-|+..+...++++..-.|.++-..+++..+
T Consensus 382 l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~ 459 (625)
T KOG4422|consen 382 LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDS 459 (625)
T ss_pred HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHH
Confidence 22110 1111 12234445555555666666666666655555566666666666666666666655555555
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.6e-14 Score=137.76 Aligned_cols=486 Identities=14% Similarity=0.100 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------hHh
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTY-TTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD------EYA 300 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~ 300 (806)
.+...|..-|.......+|+..++-+.+...-||.-.. ..+.+.+.+...+.+|++.|+..... .|+ ...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~riki 278 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHH
Confidence 33444556677777888999999988877666665543 34567888999999999999887754 222 224
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcH--------H
Q 037510 301 YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSF--------N 372 (806)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~ 372 (806)
.+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|......||..-| .
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 555566788899999999999988876 467766666666777789999999999998765333333221 2
Q ss_pred HHHHHHHhcCCH-----------HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 037510 373 TLVDGYCRECDM-----------TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGY 441 (806)
Q Consensus 373 ~li~~~~~~g~~-----------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 441 (806)
.|+.--.++..+ ++++-.--+++.--+.|+-.. | .+-.++.+..-... +.-...-
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~--~la~dle 422 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHA--ELAIDLE 422 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhh--hhhhhhh
Confidence 222222221111 111111111111111111100 0 01111111111100 0000011
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCK--MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
..-...|.+.|+++.|++++.-+.+.+-..-...-+.|-..+.. -.++..|..+-+...... +-+......-.....
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 12234577899999999998888776433333333333332222 346778888777776543 334444444444556
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
..|++++|.+.|++. ......-....| .+...+-..|++++|++.|-.+... +..+......+...|..
T Consensus 502 ~ngd~dka~~~ykea---------l~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEA---------LNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHH---------HcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 678999999998877 222221112222 2444577889999999988776542 23356667777888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
..+..+|++++.+.... ++.|+.++..|...|-+.|+-..|.+..-+...--
T Consensus 571 led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf--------------------------- 622 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------------------------- 622 (840)
T ss_pred hhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---------------------------
Confidence 89999999999888765 56688899999999999999888887765544321
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYA-AVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
+.|..+...|..-|....-+++|+.+|++..- +.|+.+-|-.++..|. +.|++.+|+++|+....+ +..|.
T Consensus 623 -----p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedl 694 (840)
T KOG2003|consen 623 -----PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDL 694 (840)
T ss_pred -----CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cccch
Confidence 24677777788888888889999999999887 8899999988887775 479999999999998774 55588
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLF 781 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~ 781 (806)
.+...|++.+...|. .+|.++-
T Consensus 695 dclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 695 DCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHHHHhccccc-hhHHHHH
Confidence 888888888887776 3344443
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.4e-13 Score=130.67 Aligned_cols=317 Identities=14% Similarity=0.192 Sum_probs=207.6
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC--ChH-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG--EGY-VALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~-~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
....|.++++.-+|+.|...|...+...-..|++.-+-.+ ++- .-++.|-.|...|-. +..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccH
Confidence 3567999999999999999988878777776665444322 222 223555566554422 22333 44544
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+ ++-+.. +.+..+|..+|.+.|+--..+.|.+++++..+...+.+..+||.+|.+-.-. ...+++.+|
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 33 332222 3456677888888888878888888888777766667777777777654322 225677777
Q ss_pred HhcCCCCCChHhHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhH-HHHHHHHHhh--
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCKVGKVDE----AIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCE-AKRVLRCMGD-- 361 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~-- 361 (806)
... .+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++..
T Consensus 265 isq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 265 ISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 776 678888888888888888886654 45677778888888888888888887777776533 4444444322
Q ss_pred --CCCCC----ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCc---chHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 362 --WNLRP----DSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG----IEPSV---VTYNTLLKGLCRVGDVDEALHLWLM 428 (806)
Q Consensus 362 --~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~ 428 (806)
..++| |...|...+..|....+.+-|.++-.-+.... +.|+. .-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33445555666666666666666554443211 12222 3355667777777788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037510 429 MLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
|+-.-.-|+..+...++.+..-.+.++-.-++|.++...|.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 87776777777888888888888888888888888877653
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=5.2e-14 Score=134.27 Aligned_cols=486 Identities=15% Similarity=0.111 Sum_probs=307.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----hHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSC-NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDV----FTCSI 197 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ 197 (806)
.++--|..-|....+..+|+..++-+.+....|+.-.. -.+...+.+..++.+|+++|+-.+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445566677788888888888888776555554432 23566777888888888888877664222222 23444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh--------HHHHH
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT--------YTTLT 269 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~li 269 (806)
+.-.+.+.|.++.|+.-|+.+.+. .|+..+-..|+-++..-|+-++..+.|.+|...-..+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444567888888888888888775 47776666666677778888888888888876422222211 11222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChH----hHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-ChhHHHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEY----AYGVLIDGYCKVGKVDEAIRVLNEMLKTG-LEM-NLLICNSLINGY 343 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~ 343 (806)
.--.+. +.++.|.+.. +.+.. |-..+|.- .-.-++.....+.-+.++.. ..+ -...-..-..-|
T Consensus 360 ~eai~n-------d~lk~~ek~~--ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 360 NEAIKN-------DHLKNMEKEN--KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhh-------HHHHHHHHhh--hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 211111 1122222210 00000 00000000 00011111111111111110 000 000001112347
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHH-Hh-cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHH
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGY-CR-ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 421 (806)
.+.|+++.|+++++-+.+..-+.-...-+.|-..+ .+ -.++..|.+.-+..+... .-+....+.-.+.....|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 78999999999998887654232222223222222 22 346677777766665431 1122222222334455789999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 422 ALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE 501 (806)
Q Consensus 422 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 501 (806)
|.+.+++.+..... .....-.+.-.+-..|++++|++.|-++... +..+..+...+...|-...+..+|++++-+...
T Consensus 509 a~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 509 AAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99999999886322 2223333444577889999999999876543 234677777888889999999999999988876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 037510 502 LGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM 581 (806)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 581 (806)
. ++.|+....-+.+.|-+.|+-..|.+.+-.- -.-++-++.+..+|...|....-+++++..|++..-
T Consensus 587 l-ip~dp~ilskl~dlydqegdksqafq~~yds----------yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS----------YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc----------ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 5 4778899999999999999999999876532 233556889999999999999999999999998765
Q ss_pred CCCCCHhHHHHHHHHH-HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037510 582 GLYPNIVTYGALISGW-CDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGK 637 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 637 (806)
++|+..-|..++..| .+.|++++|+++|++...+ ++.|...+.-|+..+...|.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 489999999988765 5789999999999998876 67788888888888877764
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=8.5e-12 Score=120.32 Aligned_cols=455 Identities=13% Similarity=0.139 Sum_probs=255.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
++++..|..+|++.... -.-+...|...+..-.+...+..|..++++.+..-+..| ..|...+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 33444444444444433 122333444444444444455555555555444322211 122222333333455555555
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHc-C
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKR-C 433 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~ 433 (806)
+|+...+. .|+...|++.|+.-.+-..++.|..++++.+-. .|++.+|......=.+.|....+..+|...++. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 55554443 455555555555555555555555555554432 345555544444444455555555555544442 1
Q ss_pred C-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHc
Q 037510 434 V-CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN--TITFNTMIKGLCKMGKMTEAQK--------IFDKMKEL 502 (806)
Q Consensus 434 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~--------~~~~~~~~ 502 (806)
. ..+...+.+....-.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+...... -++.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 011122333333333444555555555555543 1222 2233333333333344322221 23344444
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCH--H-----HHHH---HHHHHHhcCCHhHHH
Q 037510 503 GCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSI--D-----MYNY---LISVAFKSRELTSLV 572 (806)
Q Consensus 503 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~---l~~~~~~~~~~~~a~ 572 (806)
+ +-|-.+|-..++.-...|+.+...++|+... .+++|-. . +|-. .+-.-....+.+.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAI----------anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAI----------ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHH----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3 4566777777777777788888888887661 2233311 1 1211 222224578899999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHH----HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 573 DLLAEMQTMGLYPNIVTYGALISG----WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 573 ~~~~~~~~~g~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
++++...+. ++...+|+..+--. ..++.++..|.+++..++ |.-|...++...|..=.+.+++|.+.+++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 44455666554333 347788999999998887 55888999999999888999999999999999
Q ss_pred hhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC-CCCCHHhHH
Q 037510 649 VDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG-FSPDNFTYS 727 (806)
Q Consensus 649 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~ 727 (806)
+..++. |-.+|......-...|+.+.|..+|+-++... +......|-
T Consensus 464 le~~Pe--------------------------------~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 464 LEFSPE--------------------------------NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred HhcChH--------------------------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 987643 56677777777778899999999999888742 112234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC-----NSG-----------ELDRAKRLFCKLR 785 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 785 (806)
+.|+-=...|.++.|..+|+++++. .+...+|..+..-=. +.| ....|.++|++..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7777778889999999999999883 333334433332111 333 4567777777753
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=8e-13 Score=136.93 Aligned_cols=558 Identities=12% Similarity=0.038 Sum_probs=286.6
Q ss_pred hhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH
Q 037510 148 MGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNV 227 (806)
Q Consensus 148 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 227 (806)
+...|..|+.++|..++..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 344455556666666666666666655555 5555555444445555555555555555554443 3455
Q ss_pred HHHHHHHHHHHhCCCHHH---HHHHHHHHHH----cCC--------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 228 VTYNSLIDGYVSLGDLNG---AKRVLEWTCE----KGI--------------SRTAVTYTTLTKGYCKQHKMEEAENMLR 286 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~---A~~~~~~~~~----~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 286 (806)
.+|..|..+|...||+.. .++.++.+.. .|+ +.....-...+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666655433 1221111111 111 0001111223333344455566666665
Q ss_pred HHHhcCCCCCChHhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 037510 287 RMKEEDDVIVDEYAYGVLIDGYCKVGK-VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLR 365 (806)
Q Consensus 287 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (806)
.+.......|... .+.-+..... +++-..+...... .|+..+|..++++-...|+.+.|..++.+|.+.|++
T Consensus 164 ~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred hCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 5543322222221 2333333222 2222222222222 478888888888888889999999999999888888
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 366 PDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLL 445 (806)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 445 (806)
.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|....+. .|. +....++.-.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~s-q~~hg~tAav 304 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGS-QLAHGFTAAV 304 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------ccc-chhhhhhHHH
Confidence 888877777766 7777888888888888888899888887777776644422211 111 1222222222
Q ss_pred HHHHhcC-----Ch-----hHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHH
Q 037510 446 DILFNKG-----DF-----YGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG--C-LPNIITYR 512 (806)
Q Consensus 446 ~~~~~~g-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~ 512 (806)
..-.-.| +. ......+....-.|+.....+|...+ -+..+|+-++..++-..+..-. . ..++..|.
T Consensus 305 rsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~ 383 (1088)
T KOG4318|consen 305 RSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFG 383 (1088)
T ss_pred HHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHH
Confidence 2222222 11 11111222222223333334443333 3334677777777777664321 1 12334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCCCC-
Q 037510 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQT----MGLYP- 585 (806)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~p- 585 (806)
.++.-|.+.-+..-...++. + ..++.. +...--.+.....+. +...+..-+..+.. +...|
T Consensus 384 ~~lrqyFrr~e~~~~~~i~~-~----------~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 384 ALLRQYFRRIERHICSRIYY-A----------GQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred HHHHHHHHHHHhhHHHHHHH-H----------HHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccc
Confidence 55544443222111111111 0 000000 000000011111111 11111111111110 11111
Q ss_pred ------CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 586 ------NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 586 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
=...-+.++..|+..-+..++...-+.....- -+ ..|..+++.++...+.+.|..+..+....+..-
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~---- 524 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESI---- 524 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhh----
Confidence 11223455556666666666654433333221 11 568888999999999999999888876543210
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH-HhHHHHHHHHHhcC
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT-GFSPDN-FTYSTLIHGYAAVG 737 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~-~~~~~l~~~~~~~g 737 (806)
.-+..-+..+.+.+.+.+....+..+++++.+. -..|+. .+.--+.+..+..|
T Consensus 525 -------------------------~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~ag 579 (1088)
T KOG4318|consen 525 -------------------------HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAG 579 (1088)
T ss_pred -------------------------hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhcc
Confidence 124445677788888888888888888888764 223333 35556677778888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 738 DINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+.+.-.++++-+...|+.-+ .-|+....+.++...|.+..+.-.
T Consensus 580 qqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~ 623 (1088)
T KOG4318|consen 580 QQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEE 623 (1088)
T ss_pred CHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence 88888888887777665441 224445556777777777666544
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.4e-11 Score=114.42 Aligned_cols=461 Identities=11% Similarity=0.048 Sum_probs=343.7
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
-.++++..|..+|+..+.... .+...|-..+..=.++.....|..++++....-+..|. .|.-.+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHH
Confidence 457888999999999998653 57888888899999999999999999999884323232 3334444455679999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
++|+.-.+ ..|+...|++.|..-.+-+.++.|..+++...-. .|++.+|--....=.+.|.+..|..+|+...+.-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999887 4899999999999999999999999999998864 3899999999999999999999999999988752
Q ss_pred CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCHhHHHHH--------HHHHhhC
Q 037510 293 DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMN-LLICNSLINGYCKLGQVCEAKRV--------LRCMGDW 362 (806)
Q Consensus 293 ~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~ 362 (806)
|.. .+...+.+...--.+...++.|.-+|.-.+..-+.-. ...|......--+-|+.....+. ++.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 210 1122333333333456778889999998887633211 34555555544455664333322 3444554
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-------chHHHHHHHH---HhcCCHHHHHHHHHHHHHc
Q 037510 363 NLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV-------VTYNTLLKGL---CRVGDVDEALHLWLMMLKR 432 (806)
Q Consensus 363 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 432 (806)
+ +.|-.+|--.++.....|+.+...+.|++.+.+ ++|-. ..|.-+=-+| ....+.+.+.++++..++.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4 678888888888888899999999999999876 44422 1121111111 2468899999999999984
Q ss_pred CCCCChhhHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037510 433 CVCPNEVGYCTLLDILF----NKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI 508 (806)
Q Consensus 433 ~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 508 (806)
++...+|+..+--+|+ ++.++..|.+++...+.. .|-..++...|..-.+.++++....+++..++-+ |.+.
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 4445666665554444 678999999999988854 7888999999999999999999999999999987 5678
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
.+|......-...|+.+.|..+|+... .+.........|.+.|+.-...|.++.|..+++.+++. .+...
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi--------~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k 541 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAI--------SQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK 541 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh--------cCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence 899988888889999999999999773 22223334567788888888999999999999999986 34444
Q ss_pred HHHHHHHHHH-----ccC-----------ChHHHHHHHHHHHH
Q 037510 589 TYGALISGWC-----DAG-----------MLNKAFKAYFDMIE 615 (806)
Q Consensus 589 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 615 (806)
+|.++..--. +.| .+..|..+|+++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 6666554322 333 45677777777654
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=2.2e-11 Score=126.55 Aligned_cols=699 Identities=14% Similarity=0.066 Sum_probs=330.1
Q ss_pred hCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhc-------cCCCHHHHHHHHHHH
Q 037510 60 KQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKE-------FAFSPTVFDMILKIY 132 (806)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~l~~~~ 132 (806)
...|..|+..||..++..|+..|+.+.|- +|..|..- +-.....+|+.++.+.+. -.+.+++|..|...|
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k--sLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc--cccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 45788999999999999999999999887 66655321 222234456666554221 135578888888888
Q ss_pred HHcCChhhHHHHHHH-h---h----hcCCCcChhhH---------------HHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037510 133 AQKGMLKNALHVFDN-M---G----KYGCIPSLRSC---------------NCLLSNLVKNGEGYVALLVYEQMMRVGIV 189 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~-~---~----~~~~~~~~~~~---------------~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 189 (806)
...|++.. .+..++ + . ..|+- +...| ...+..+.-.|-++.+++++..+....-
T Consensus 94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~- 170 (1088)
T KOG4318|consen 94 RIHGDLIL-FEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW- 170 (1088)
T ss_pred HhccchHH-HHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc-
Confidence 88888665 222222 1 1 11110 11111 1222233333444444444433321100
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 190 PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLT 269 (806)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 269 (806)
+ .++..+++-+... .....++........-.|+..+|..++.+-...|+.+.|..++.+|++.|++.+..-|-.|+
T Consensus 171 -~-~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 171 -N-APFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred -c-chHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 0 0111112222221 22333343333322114888899999999999999999999999999999887777666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQV 349 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 349 (806)
-+ .++..-++.+++.|... |+.|+..|+...+-.+..+|....+.+..+ ...-.....+..+.++......+
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred hc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccHhHHHH
Confidence 55 77778888888888887 899999988877777776555222221111 00011222333333331111111
Q ss_pred hH-----HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC-CcchHHHHHHHHHhcCCHHH
Q 037510 350 CE-----AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG--IEP-SVVTYNTLLKGLCRVGDVDE 421 (806)
Q Consensus 350 ~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~-~~~~~~~ll~~~~~~~~~~~ 421 (806)
+. ....+.+..-.|+.....+|...+. ...+|.-++..++-..|..-- ..+ ++..|..++.-|.+.-+..-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 11 1111111111232222233433332 223577677777766664321 111 23334444444433211110
Q ss_pred HHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCC-------cHHHHHHHHHHHHhcCC
Q 037510 422 ALHLWL--MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNIL----ARGFYK-------NTITFNTMIKGLCKMGK 488 (806)
Q Consensus 422 a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-------~~~~~~~li~~~~~~g~ 488 (806)
...++. +.+.. ..+....-.+.....+. +...+.+-+.... .+.+.+ -...-+.++..++..-+
T Consensus 398 ~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred HHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 000000 00000 00000000011111100 1111111111000 000000 11122334444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSREL 568 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 568 (806)
..+++..-+.....-+ ...|..+++-++...+.+.|..+.++... ....+..+..-+..+.+.+.+.+..
T Consensus 475 ~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~-------~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDT-------RDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc-------cchhhhcccHhHHHHHHHHHHhHHH
Confidence 4444433332222111 13466666666666666666666665522 1222333444555666666666666
Q ss_pred hHHHHHHHHHHHCCC-CCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037510 569 TSLVDLLAEMQTMGL-YPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQ 646 (806)
Q Consensus 569 ~~a~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 646 (806)
..+..++.++.+.-. .|+ ..+.-.+++.....|+.+.-.++++-+...|+..+ ..++....+.++...|++.++
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcch
Confidence 666666666655211 111 22333344444555666655555555544433221 111111122222222222222
Q ss_pred HHhhC-CCCCCh-----------------------------------------------hhhhhhhhhhhHHHH---Hhh
Q 037510 647 KMVDF-DFVPDL-----------------------------------------------KYMASSAINVDAQKI---AMS 675 (806)
Q Consensus 647 ~~~~~-~~~p~~-----------------------------------------------~~~~~~~~~~~~~~~---~~~ 675 (806)
...+. .+.|-. .+....|...+.... ...
T Consensus 621 ~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 621 PEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 22111 111100 000000111100000 000
Q ss_pred hHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 037510 676 LDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG---DINEAFNLRDEMLKI 752 (806)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 752 (806)
+..+. +.....-|+..|.+.|+++.|..+|.++. ..|...+...|+..+.+.. ++-++....+++.+.
T Consensus 701 ~elt~------~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~ 771 (1088)
T KOG4318|consen 701 LELTH------ELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASEL 771 (1088)
T ss_pred HHHHh------HhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhc
Confidence 00000 11122237788999999999999999987 5688887778888777655 344444444444442
Q ss_pred C-CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 753 N-LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 753 ~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
. .-| +...|.--+...++....+-|.+.|.+..++....+..++..++.++
T Consensus 772 ~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L 824 (1088)
T KOG4318|consen 772 RTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKCL 824 (1088)
T ss_pred ccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 1 111 22223333334445555668899999999887777788887777665
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.8e-12 Score=123.03 Aligned_cols=509 Identities=15% Similarity=0.076 Sum_probs=317.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTK 270 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 270 (806)
+..-+..+++-+..+.++..|.-+-+++...+..|+.. --+..++.-.|+++.|..++..-.-.+ .|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHH
Confidence 44556667776777778888888888887766555443 346677888888888888776553322 57777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 271 GYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 271 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
++.+..++++|..++...... -++..|..--. ...-..+.+. ++... ......+-.=...|....+.+
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~----~~~f~yy~~~~--~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVE----TNPFSYYEKDA--ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred HHHHHHHHHHHHHHhcccchh----hcchhhcchhh--hceeccCccc----ccccc--cchhceeeeeeehhhhhccHH
Confidence 888888888888888733111 01111110000 0000000010 00000 001111111122333444556
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhc-CCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHH-HhcCCHHHHHHHHH
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE-CDMTEAFRLCAEMLRQ-GIEPSVVTYNTLLKGL-CRVGDVDEALHLWL 427 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~ 427 (806)
+|...|.+.... |...|..+....... -..++-.++++.+--. -..-+......+.... ++..+ +.....-.
T Consensus 159 ~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~ 233 (611)
T KOG1173|consen 159 EARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNE 233 (611)
T ss_pred HHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCc
Confidence 666666655432 333332222211110 0011112222210000 0000111111111111 00000 00000000
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 428 MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
+..-.+..-+........+-+...+++.+..++.+++.+.. ++....+-.-|..+...|+..+-..+-.++++.- |..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCC
Confidence 01111234466667777888889999999999999999874 5566666667778899999998888888888874 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 586 (806)
..+|-++.--|...|+..+|++.|.+. ..+.|. ...|-.+...|.-.|..|.|...+....+. ++-.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKa-----------t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~ 379 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKA-----------TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGC 379 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHH-----------hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCC
Confidence 789999999999999999999999866 233333 456888899999999999999998877663 1111
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFD--FVPDLKYMASSA 664 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~ 664 (806)
..-+-.+..-|.+.++.+.|.+.|.++... .+.|+..++-+.-.....+.+.+|..+|+.....- ..+.
T Consensus 380 hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-------- 450 (611)
T KOG1173|consen 380 HLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-------- 450 (611)
T ss_pred cchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------
Confidence 122333445588899999999999999875 35578888888888888999999999999887321 0000
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 743 (806)
. .--..+++.|+++|.+.+++++|+..+++.+. ..|.. .+|.+++..|...|+++.|+
T Consensus 451 ------------------~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 451 ------------------K-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred ------------------c-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHH
Confidence 0 01234799999999999999999999999999 66755 59999999999999999999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHH
Q 037510 744 NLRDEMLKINLVPNIATYNSLVS 766 (806)
Q Consensus 744 ~~~~~~~~~~~~p~~~~~~~l~~ 766 (806)
+.|.+.+. +.||-.+...++.
T Consensus 510 d~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 510 DHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHh--cCCccHHHHHHHH
Confidence 99999998 7887655444443
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=1.2e-08 Score=102.99 Aligned_cols=548 Identities=14% Similarity=0.144 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc-CCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY-GCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
|.++...+....++|++...+..|+..+.. .+......|...+......+-++.++.+|++.++. .|. .-+--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 556666667777888888888888877654 33344557888888888888888888888888773 333 3566777
Q ss_pred HHHhcCChhHHHHHHHHHHHcC------CCcCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHcCCCCC--hhhHHHHH
Q 037510 201 AYCKEKSMEKALDFVKEMENLG------FELNVVTYNSLIDGYVSLGDLNG---AKRVLEWTCEKGISRT--AVTYTTLT 269 (806)
Q Consensus 201 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~li 269 (806)
-+++.+++++|.+.+...+... -+.+...|.-+-....+.-+.-. ...++..+...- +| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHH
Confidence 7888888888888887775321 13344556665555555433322 222333332221 22 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCC
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEML-KTGLEMNLLICNSLINGYCKLGQ 348 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 348 (806)
+-|.+.|.+++|.++|++..+. ...+.-|..+.+.|+.-....-+..+= -.. +.+-+-+.. +
T Consensus 256 dYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------d 318 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------D 318 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------h
Confidence 8888888888888888887654 123444556666655422211111110 000 111111111 1
Q ss_pred HhHHHHHHHHHhhCC-----------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------chHHHHHH
Q 037510 349 VCEAKRVLRCMGDWN-----------LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV------VTYNTLLK 411 (806)
Q Consensus 349 ~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~ 411 (806)
++-...-|+.+.+.. -+.++..|..-+. +..|+..+-...+.+..+. +.|.. ..|..+.+
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 112222222222111 1334444544333 3466777777788777764 33322 34677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------------C
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVCPN---EVGYCTLLDILFNKGDFYGAVKLWNNILARGFY-----------------K 471 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~ 471 (806)
.|-..|+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++.+......-. .
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888999999999988877533221 346666666677778888888888776643211 1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC
Q 037510 472 NTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS 551 (806)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 551 (806)
+...|...++..-..|-++....+++.+.+..+. ++.........+-...-++++.++|++- ...-..|+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErg---------I~LFk~p~ 545 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERG---------ISLFKWPN 545 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcC---------CccCCCcc
Confidence 3345666677777778899999999999887543 3322222223334455578888888743 11112233
Q ss_pred -HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCC--HH
Q 037510 552 -IDMYNYLISVAFK---SRELTSLVDLLAEMQTMGLYPNIVTYGALISG--WCDAGMLNKAFKAYFDMIEKGFSPN--VA 623 (806)
Q Consensus 552 -~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~--~~ 623 (806)
...|+..+..+.+ ...++.|..+|++..+ |++|...-+..|+-+ -.+.|-...|+.+++++... +++. ..
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~ 623 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHH
Confidence 3566665555543 3468999999999998 677765443333322 23568888899999987654 3443 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.|+..|.--...=-+.....+++++++.- |+.. -....--....-++.|.
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~----------------------------~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSK----------------------------AREMCLRFADLETKLGE 673 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHH----------------------------HHHHHHHHHHHhhhhhh
Confidence 56666654444444555677777777652 2210 00011122344466777
Q ss_pred hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCC
Q 037510 704 VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGD 738 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~ 738 (806)
.+.|..++..-.+. ..|.. .-|.+.-.-=.+.|+
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 77777777665552 23322 345555555566666
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3.8e-12 Score=132.11 Aligned_cols=251 Identities=14% Similarity=0.047 Sum_probs=147.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHH
Q 037510 484 CKMGKMTEAQKIFDKMKELGCLPNIITYR--TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISV 561 (806)
Q Consensus 484 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 561 (806)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+ ... .+.+......+...
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~---------~~~-~P~~~~al~ll~~~ 196 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKL---------LEV-APRHPEVLRLAEQA 196 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHH---------Hhc-CCCCHHHHHHHHHH
Confidence 4555555555555555543 23322111 2234455555555555555544 111 12234455555555
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 562 AFKSRELTSLVDLLAEMQTMGLYPNI-------VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+.++..-+. .+.++.....+...+..
T Consensus 197 ~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 197 YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 55555566666555555554332211 12222222222333444455555554332 24466677777778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|+.++|.+.+++..+..+ ++... ++.+....++.+++++.++++
T Consensus 276 ~g~~~~A~~~L~~~l~~~~---------------------------------~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY---------------------------------DERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC---------------------------------CHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 8888888888877776432 22211 233444557788888888888
Q ss_pred HHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 715 LLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 715 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+ ..|++. .+..++..|.+.|+|++|.+.|+++.+ ..|+..++..|..++.+.|+.++|..++++-..
T Consensus 321 lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77 567665 567788888888888888888888887 567777777788888888888888888877543
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=5.1e-12 Score=131.12 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=169.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 037510 449 FNKGDFYGAVKLWNNILARGFYKNTITFN--TMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEE 526 (806)
Q Consensus 449 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 526 (806)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555443 22222111 22344555566666666666665554 3345555555666666666666
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSI-------DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
|.+++..+. +....++. ..|..++.......+.+...++++.+.+. .+.++.....+..++..
T Consensus 206 a~~~l~~l~---------k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 206 LLDILPSMA---------KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHHHHH---------HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHH
Confidence 666666552 22211111 12222333333344555666666665443 24467788889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
.|+.++|.+.+++..+. +|+.... ++.+....++.+++.+.+++..+..+.
T Consensus 276 ~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~------------------------- 326 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD------------------------- 326 (398)
T ss_pred CCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-------------------------
Confidence 99999999999999885 5555322 233344569999999999999987633
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 680 ARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|+..+.+++..+.+.|++++|.+.|+++.+ ..|+..++..|..++.+.|+.++|.+++++.+.
T Consensus 327 -------~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -------TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888999999999999999999999999 789999999999999999999999999999876
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=4.5e-12 Score=132.36 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=168.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHH
Q 037510 450 NKGDFYGAVKLWNNILARGFYKNT-ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNI--ITYRTLSDGYCKVGNLEE 526 (806)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 526 (806)
..|+++.|.+.+.+..+.. |+. ..+-.......+.|+.+.|..++.+..+.. |+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455555555555544432 222 222223344455566666666665554432 222 222223455555666666
Q ss_pred HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH---HHHccCCh
Q 037510 527 AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALIS---GWCDAGML 603 (806)
Q Consensus 527 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~---~~~~~g~~ 603 (806)
|...++.+ ... .+.+..+...+...+...|++++|.+.+..+.+.+..+.......-.. .....+..
T Consensus 172 Al~~l~~l---------~~~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 172 ARHGVDKL---------LEM-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHHHHH---------HHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555 111 122344555555666666666666666666665543222211111111 11222333
Q ss_pred HHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 604 NKAFKAYFDMIEKGF---SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
+++.+.+..+.+... +.+...+..++..+...|+.++|.+.+++..+..+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~------------------------ 297 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR------------------------ 297 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc------------------------
Confidence 333445555544321 13777888888888889999999999988888654320
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF---TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
+..............++.+.+.+.+++..+ ..|+.. ...++++.|.+.|+|++|.+.|++.......|+
T Consensus 298 ------~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 298 ------AISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred ------cchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 100012222233445777888888888888 567665 456889999999999999999995444336788
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 758 IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 758 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
..++..+...+.+.|+.++|.+++++..
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888899999999999999999998854
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.3e-11 Score=114.87 Aligned_cols=306 Identities=11% Similarity=0.085 Sum_probs=208.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCh
Q 037510 447 ILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGC--LPNIITYRTLSDGYCKVGNL 524 (806)
Q Consensus 447 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 524 (806)
++....+.+++..-.+.....|++.+...-+....+.....++++|+..|+++.+... -.|..+|+.++-+ +..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 3333445555555555555555555544444444455555666777777776666531 1234555544322 22211
Q ss_pred HH---HHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccC
Q 037510 525 EE---AFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAG 601 (806)
Q Consensus 525 ~~---A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 601 (806)
.- |..+++ - -+-.++|.-.+.+.|.-.++.+.|...|+...+.+ +-....|+.+..-|....
T Consensus 314 kLs~LA~~v~~------------i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 314 KLSYLAQNVSN------------I--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHHHHHHHHHH------------h--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhc
Confidence 11 111111 1 11223455566777788888888888888888763 223557888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhh
Q 037510 602 MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESAR 681 (806)
Q Consensus 602 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (806)
+...|++.|+.+++-. +.|-..|-.|+++|.-.+...=|+-+|+++.... |
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-------------------------- 429 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-------------------------- 429 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C--------------------------
Confidence 9999999999999863 5588899999999999999999999999988754 2
Q ss_pred cCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC
Q 037510 682 SLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK----INLVPN 757 (806)
Q Consensus 682 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 757 (806)
.|+..|.+|+.+|.+.++.++|+.-|......| ..+...+..|+..|-+.++.++|...|++-++ .|...+
T Consensus 430 ----nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 430 ----NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred ----CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 488899999999999999999999999998854 23446888999999999999999999988876 232222
Q ss_pred --hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 758 --IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 758 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
....--|..-+.+.+++++|..+...... ..+...--+.|+..+.+
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~--~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLK--GETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhc--CCchHHHHHHHHHHHHH
Confidence 22223355667788999999888777665 26777777777766543
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.1e-15 Score=145.36 Aligned_cols=260 Identities=17% Similarity=0.152 Sum_probs=96.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHH
Q 037510 479 MIKGLCKMGKMTEAQKIFDKMKELG-CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY 557 (806)
Q Consensus 479 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (806)
+...+.+.|++++|.++++...... .+.|...|..+.......++++.|...++.+ ...+.. +...+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l---------~~~~~~-~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKL---------LASDKA-NPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---------cccccc-ccccccc
Confidence 3455556666666666664433322 1233344444555555566666666666655 222111 3334444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG-FSPNVAICSKLVSTLCRLG 636 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 636 (806)
++.. ...+++++|.+++....+. .+++..+..++..+...|+++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 5544 4666666666666655444 3455556667777777788888888877766432 2446667777777778888
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 637 KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 637 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+.++|...++++++..+. |..+.+.++..+...|+.+++.++++...+
T Consensus 161 ~~~~A~~~~~~al~~~P~--------------------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD--------------------------------DPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT---------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--------------------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888888888776532 566777788888888888888777777776
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 717 TGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 717 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.. +.|...+..++.+|...|+.++|+..|++..+.+ +.|+.+...+++++...|+.++|.++..++.
T Consensus 209 ~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 209 AA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp H--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 32 2334466778888888888888888888887732 2377777888888888888888888877654
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=7.7e-12 Score=130.64 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=101.0
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC-SKLVST--LCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
++..+..+...+...|+.++|.+.+++.++.. ||.... ..++.. ....++.+.+.+.+++..+..+.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-------- 331 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-------- 331 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC--------
Confidence 67777888888889999999999999998863 333210 012222 23457788888888888876532
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCCh--HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNY--VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDIN 740 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 740 (806)
|+ ....+++..+.+.|++++|.+.|+........||...+..++..+.+.|+.+
T Consensus 332 ------------------------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 332 ------------------------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred ------------------------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 44 6778899999999999999999995333337899988889999999999999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.8e-13 Score=136.78 Aligned_cols=285 Identities=15% Similarity=0.134 Sum_probs=222.0
Q ss_pred CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 037510 452 GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG--CLPNIITYRTLSDGYCKVGNLEEAFK 529 (806)
Q Consensus 452 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 529 (806)
-+..+|...|..+... +....++...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3578899999985554 34455777888899999999999999999998753 123567777776544321 2222
Q ss_pred HHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHH
Q 037510 530 IKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP-NIVTYGALISGWCDAGMLNKAFK 608 (806)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 608 (806)
++..- .-..-+..+.+|-++.++|.-+++.+.|++.|++.... .| ...+|+.+..-+.....+|.|..
T Consensus 408 ~Laq~---------Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 408 YLAQD---------LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHH---------HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 22211 12223456789999999999999999999999998875 45 56788888888888899999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCC
Q 037510 609 AYFDMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPN 687 (806)
Q Consensus 609 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (806)
.|+.++.. .| +-..|..++-.|.++++++.|.-.|+++.+..+. +
T Consensus 477 ~fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~--------------------------------n 522 (638)
T KOG1126|consen 477 SFRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS--------------------------------N 522 (638)
T ss_pred HHHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc--------------------------------c
Confidence 99988854 22 3345666778899999999999999999887643 7
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLV 765 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 765 (806)
.+....++..+-+.|+.++|+++++++.. +.|... .--..+..+...+++++|+..++++.+ +.| +...+..++
T Consensus 523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llg 598 (638)
T KOG1126|consen 523 SVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLG 598 (638)
T ss_pred hhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 78888899999999999999999999999 677654 555677888899999999999999998 667 556778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
..|.+.|+.+.|+.-|-.+.+ ..|-
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~--ldpk 623 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALD--LDPK 623 (638)
T ss_pred HHHHHHccchHHHHhhHHHhc--CCCc
Confidence 999999999999999999887 4443
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=7.3e-13 Score=133.84 Aligned_cols=281 Identities=14% Similarity=0.100 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 418 DVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG--FYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
+..+|...|.....+ +.........+..+|...+++++|.++|+.+.+.. ...+..+|.+.+..+-+. -+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~---v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE---VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---HHHHHH
Confidence 466777777774443 33334566777788888888888888888877652 112456676666554321 111222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSRELTSLVDL 574 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 574 (806)
-+.+.+.. +..+.+|..+.++|.-+++.+.|++.|++. ..+.| ...+|+.+..-+.....+|.|...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RA-----------iQldp~faYayTLlGhE~~~~ee~d~a~~~ 477 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRA-----------IQLDPRFAYAYTLLGHESIATEEFDKAMKS 477 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHh-----------hccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence 23344433 445678888888888888888888888755 23444 456677777777777778888888
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037510 575 LAEMQTMGLYPN-IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDF 653 (806)
Q Consensus 575 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 653 (806)
|+..+.. .|. -..|-.+...|.+.++++.|.-.|+++++-+ +.+.+....++..+-+.|+.|+|+.+++++...+.
T Consensus 478 fr~Al~~--~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 478 FRKALGV--DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHhhhcC--CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 8776643 221 2234445566778888888888888877653 33556666677777788888888888888877654
Q ss_pred CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 037510 654 VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHG 732 (806)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 732 (806)
+ |+..--..+..+...+++++|+..|+++.+ +.|+.. .|..++..
T Consensus 555 k--------------------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki 600 (638)
T KOG1126|consen 555 K--------------------------------NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI 600 (638)
T ss_pred C--------------------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 4 444444556677777888888888888887 777764 67777888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037510 733 YAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~ 751 (806)
|.+.|+.+.|+.-|.-|.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHccchHHHHhhHHHhc
Confidence 8888888888887777776
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-10 Score=113.51 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=229.0
Q ss_pred CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 037510 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTL 409 (806)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 409 (806)
.-+......-.+-+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+-.++.+. .+-...+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666677778888999999999999988875 777778888888899999999999998999886 33467899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 037510 410 LKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM 489 (806)
Q Consensus 410 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 489 (806)
..-|.-.|+..+|++.|.+...-.. .=...|..+...|.-.|..+.|+..+..+.+. ++.....+--+..-|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 9999999999999999998766421 13457889999999999999999999887764 122222233344557778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
+-|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+.... +.+...... .....+++.|...+.+.+.++
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~--~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE--VIKSVLNEK-IFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH--Hhhhccccc-cchhHHHHhHHHHHHHHhhHH
Confidence 99999999998875 66888888888888889999999999988741 111111111 135667888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
+|+..+++..... +-+..++.++.-.|...|+++.|++.|.+.+.. .|+..+...++..
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHH
Confidence 9999999988863 557888999988899999999999999998864 7777666665553
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.9e-14 Score=142.70 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHcCChhhHHHHH
Q 037510 129 LKIYAQKGMLKNALHVF 145 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~ 145 (806)
...+.+.|++++|++++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33344444444444444
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=8.9e-09 Score=103.78 Aligned_cols=491 Identities=14% Similarity=0.122 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHhHHHH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG------IVPDVFTCSI 197 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~ 197 (806)
++...++.....|.++-++.++++.++. ++..-+--+..+++.+++++|-+.+...+... -+.+-..|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4444555555667777777777777773 55556667777777788888777777665431 1222333444
Q ss_pred HHHHHHhcCCh---hHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037510 198 VVNAYCKEKSM---EKALDFVKEMENLGFELN--VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGY 272 (806)
Q Consensus 198 l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 272 (806)
+-....+.-+. -....+++.+... -+| ...|++|.+-|.+.|.++.|..++++....- .++.-|+.+.+.|
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 43333332221 1233344444332 233 3467788888888888888888888776632 2333344444444
Q ss_pred HhcC----------------------CHHHHHHHHHHHHhcCC----------CCCChHhHHHHHHHHHhcCChHHHHHH
Q 037510 273 CKQH----------------------KMEEAENMLRRMKEEDD----------VIVDEYAYGVLIDGYCKVGKVDEAIRV 320 (806)
Q Consensus 273 ~~~g----------------------~~~~a~~~~~~~~~~~~----------~~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (806)
.+-. +++-.+.-|+.+..... .+.++..|..-.. +..|+..+-...
T Consensus 292 a~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~t 369 (835)
T KOG2047|consen 292 AQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINT 369 (835)
T ss_pred HHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHH
Confidence 3211 12222233333332211 1112223333222 235677788888
Q ss_pred HHHHHHCCCCCC------hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC---hhcHHHHHHHHHhcCCHHHHHHHH
Q 037510 321 LNEMLKTGLEMN------LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD---SFSFNTLVDGYCRECDMTEAFRLC 391 (806)
Q Consensus 321 ~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 391 (806)
|.++++. +.|. ...|..+...|-..|+++.|..+|++..+-..+.- ..+|......-.++.+++.|++++
T Consensus 370 yteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 370 YTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888875 2332 23678888999999999999999999876543322 345555666667788999999998
Q ss_pred HHHHHCCCC----------C-------CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 037510 392 AEMLRQGIE----------P-------SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDF 454 (806)
Q Consensus 392 ~~m~~~g~~----------~-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (806)
++....--. | +...|...++.--..|-++....+++++++..+.. +.........+-...-+
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yf 527 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYF 527 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHH
Confidence 887542111 1 12334555555556677788888888888765432 22223333344455667
Q ss_pred hHHHHHHHHHHHCCCCCcH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHH
Q 037510 455 YGAVKLWNNILARGFYKNT-ITFNTMIKGLCK---MGKMTEAQKIFDKMKELGCLPNIIT--YRTLSDGYCKVGNLEEAF 528 (806)
Q Consensus 455 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~ 528 (806)
+++.++|++-+..--.|+. ..|+..+..+.+ ..+++.|..+|++..+ |++|...- |......--+.|....|.
T Consensus 528 eesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~am 606 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAM 606 (835)
T ss_pred HHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888776655333443 356666555443 2357888899998888 65655422 222222223457777788
Q ss_pred HHHHHHHhcccChhhhhcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH---HHHHHHHHccCCh
Q 037510 529 KIKNLMERREILPSMEKEAIVP--SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY---GALISGWCDAGML 603 (806)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~ 603 (806)
.++++.. .+.++ -..+||..|.-....=.+.....+|++..+. -|+...- ....+.-++.|.+
T Consensus 607 siyerat----------~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 607 SIYERAT----------SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHHHHH----------hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhH
Confidence 8887762 22222 2456776665544444445556667766664 4454332 2233445677888
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 037510 604 NKAFKAYFDMIEK-GFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 604 ~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
+.|..+|....+- ....+...|.+.-.-=.+.|+-+
T Consensus 675 dRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 675 DRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 8888888776653 22234556666655556777733
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.9e-10 Score=109.00 Aligned_cols=363 Identities=12% Similarity=0.037 Sum_probs=242.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--HHH
Q 037510 260 RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLL--ICN 337 (806)
Q Consensus 260 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 337 (806)
.|...+-...-.+-+.|....|++.|...... .+-.-..|..|..... + ++........+ +.|.. .--
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHHHH
Confidence 44444444445566778888888888877654 2223333433333221 2 22222222222 21211 112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCcchHHHHHHHHHh
Q 037510 338 SLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIE--PSVVTYNTLLKGLCR 415 (806)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~ 415 (806)
-+..++-...+.+++..-.+.....|++.+...-+....+.....++++|+.+|+++.++..- -|..+|+.++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234555566678888888888888887666665566666666788899999999999887321 245677766533 3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 037510 416 VGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKI 495 (806)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 495 (806)
..+.. +.++.+-.-.-.+-.+.|...+.+.|.-.++.+.|...|+..++.+ +.....|+.+..-|...++...|++-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 32221 2222222211123356688888899999999999999999999875 44567788888889999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 037510 496 FDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLL 575 (806)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 575 (806)
++..++.+ |.|-..|-.+.++|.-.+...-|+-+|++. ..-.+.|...|.+|..+|.+.++.++|++.|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA----------~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKA----------LELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHH----------HhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999886 668889999999999999999999888865 2223447888999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 576 AEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK----GFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 576 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
......| ..+...+..+.+.|.+.++.++|...|.+.++. |...+ .....-|..-+.+.+++++|........
T Consensus 456 krai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8888765 335577888888899999999998888887752 22222 1222224444566777777766555443
No 53
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=8.7e-09 Score=108.73 Aligned_cols=558 Identities=14% Similarity=0.158 Sum_probs=295.1
Q ss_pred CCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCC-------------CchhhHHHH
Q 037510 45 RLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNY-------------AGFLIWDEL 111 (806)
Q Consensus 45 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~-------------~~~~~~~~l 111 (806)
+.+|+.++.|-.-+....+ +...++.++.++......+.+.+.+-.+++...... .++.+-+.+
T Consensus 522 r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAI 598 (1666)
T KOG0985|consen 522 RSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAI 598 (1666)
T ss_pred ccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHH
Confidence 5678888887666542222 334566677777776666666666666554321110 011111222
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHH----HHHHHHcCChHHHHHHHHHHHHCC
Q 037510 112 VRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCL----LSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
+. ..-++..-...+...|-++|-...|++.+..+... +..++.-+.+ +-.|.-.-.++++.+.++.|+..+
T Consensus 599 Lg---N~mFtHyDra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N 673 (1666)
T KOG0985|consen 599 LG---NDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN 673 (1666)
T ss_pred Hh---ccccccccHHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 11 11122222456778889999999999888876542 1222222211 334555667899999999999998
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----------CCCcCHHHHHHHHHHHHhCCCHHHHHHHHHH----
Q 037510 188 IVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENL-----------GFELNVVTYNSLIDGYVSLGDLNGAKRVLEW---- 252 (806)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---- 252 (806)
+..|..+.-.+..-|+.+=-.+..+++|+..... ++..|..+.--.|.+.|+.|++.+.+++.++
T Consensus 674 irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Y 753 (1666)
T KOG0985|consen 674 IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCY 753 (1666)
T ss_pred HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccC
Confidence 8888888777777777766667777777766542 2445666667788999999999888776543
Q ss_pred --------HHHcCCC---C-----ChhhHHHHHHHHHhcCCHHHHHHHHHH-------------HHhcCCCCCChHh---
Q 037510 253 --------TCEKGIS---R-----TAVTYTTLTKGYCKQHKMEEAENMLRR-------------MKEEDDVIVDEYA--- 300 (806)
Q Consensus 253 --------~~~~~~~---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~-------------~~~~~~~~~~~~~--- 300 (806)
+++..+. | |-.-+..=+-.|.-.++..+-+++|-+ +.+. .+ +...
T Consensus 754 dpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~-dC--~E~~ik~ 830 (1666)
T KOG0985|consen 754 DPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV-DC--SEDFIKN 830 (1666)
T ss_pred CHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC-CC--cHHHHHH
Confidence 1121110 1 111111111112222222333333222 1111 01 1111
Q ss_pred ----------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHH-H---HHHH------Hh
Q 037510 301 ----------YGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAK-R---VLRC------MG 360 (806)
Q Consensus 301 ----------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~---~~~~------~~ 360 (806)
..-+..-.-+.+++.--..+++.....|.. ++.++|+|...|...++-.+-. + .++. ..
T Consensus 831 Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCE 909 (1666)
T KOG0985|consen 831 LILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCE 909 (1666)
T ss_pred HHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhc
Confidence 122333344566777777888888888876 8999999988877655422110 0 0110 01
Q ss_pred hC-----------C--------CCCChhcHHHHHHHHHhcCCH---HHH--------HHHHHHHHHCCCC--CCcchHHH
Q 037510 361 DW-----------N--------LRPDSFSFNTLVDGYCRECDM---TEA--------FRLCAEMLRQGIE--PSVVTYNT 408 (806)
Q Consensus 361 ~~-----------~--------~~~~~~~~~~li~~~~~~g~~---~~a--------~~~~~~m~~~g~~--~~~~~~~~ 408 (806)
++ | +-.....|-...+.+.+..+. .+. .+++++..+.+++ .|+...+.
T Consensus 910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 11 0 000011222233333333332 222 3567777665543 24455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------------------
Q 037510 409 LLKGLCRVGDVDEALHLWLMMLKRCV--CPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG------------------ 468 (806)
Q Consensus 409 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 468 (806)
.+.++...+-..+-+++++++.-... ..+...-+.|+-... .-+.....+..+++-.-+
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHH
Confidence 77888888888888888888764321 111112222222222 222333333333332211
Q ss_pred -----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhh
Q 037510 469 -----FYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSM 543 (806)
Q Consensus 469 -----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 543 (806)
+..+....+.++. ..+..+.|.++-++. ..+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1069 ~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--------- 1130 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--------- 1130 (1666)
T ss_pred HHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc---------
Confidence 0112222222221 113333443333322 23456666666666677776666655433
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 037510 544 EKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA 623 (806)
Q Consensus 544 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 623 (806)
.|+..|..+++...+.|.+++....+...+++.-.|... +.|+-+|++.++..+-.++. .-|+..
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 355566667777777777777777766666655444443 35666677666665543332 235666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
....+++-|...|.++.|.-++...
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 6666666666666666666555543
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5e-11 Score=115.77 Aligned_cols=229 Identities=17% Similarity=0.165 Sum_probs=169.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|+.-.|..-|+..++....++ ..|--+..+|....+.++..+.|++.. .. -+.++.+|-.-...+
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~---------~l-dp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAE---------DL-DPENPDVYYHRGQMR 404 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHH---------hc-CCCCCchhHhHHHHH
Confidence 3445788888888888887753322 236667778888888888888888662 21 233566777777788
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
.-.+++++|..-|++.+... +.+...|.-+.-+..+.++++++...|++.+++ ++..+..|+.....+..+++++.|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 88888999999999888752 223455666666666888999999999999887 5667889999999999999999999
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
+.++.++.....-+...+ .+-+.+.-.++-.-.+ +++.+|+.++++.++ +.|.
T Consensus 483 k~YD~ai~LE~~~~~~~v------------------------~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpk 535 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIV------------------------NAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPK 535 (606)
T ss_pred HHHHHHHhhccccccccc------------------------cchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCch
Confidence 999999876433211110 1112222223322233 899999999999999 7787
Q ss_pred H-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 723 N-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 723 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
. .+|.+|+..-.+.|+.++|+++|++...
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6 5999999999999999999999999876
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=2.3e-09 Score=110.59 Aligned_cols=238 Identities=13% Similarity=0.036 Sum_probs=107.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH
Q 037510 259 SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNS 338 (806)
Q Consensus 259 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (806)
..+...|..|.-++...|+++.+.+.|++.... ..-....|..+...+...|.-..|..++++.......|+..+--.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 344555555555555556666666666555432 223344555555555555555555555555444332232222222
Q ss_pred HH-HHHH-hcCCHhHHHHHHHHHhhC--CC--CCChhcHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 037510 339 LI-NGYC-KLGQVCEAKRVLRCMGDW--NL--RPDSFSFNTLVDGYCRE-----------CDMTEAFRLCAEMLRQGIEP 401 (806)
Q Consensus 339 li-~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~ 401 (806)
++ ..|. +.+.+++++++-.+..+. +. ......|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22 1121 234444444444443331 00 11122222222222211 1233455555555554322
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK 481 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 481 (806)
|......+.--|+..++++.|.+..++.++.+-..+...|..+.-.+...+++.+|+.+.+..... +..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 222222223334455566666666666666544455566666666666666666666666655543 1112221112222
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMK 500 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~ 500 (806)
.-...++.+++......+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL 574 (799)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 2223455555555555443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.3e-10 Score=113.05 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=148.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 037510 379 CRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAV 458 (806)
Q Consensus 379 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (806)
.-.|+...|.+.|+..++....+ ...|..+...|....+.++.+..|+...+.. +.+..+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34678888888888888764332 2227777788888888888888888888763 336677777778888888899999
Q ss_pred HHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 037510 459 KLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERRE 538 (806)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 538 (806)
.-|++.+... +.+...|-.+..+..+.++++++...|++..+. +|.-+..|+....++...++++.|.+.|+...+.+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999888764 335566666777777888999999999998876 35557888888999999999999999988763211
Q ss_pred cChhhhhcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 539 ILPSMEKEAIVPS--IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 539 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
.. ..++..+ +.+-..++..-. .+++..|.+++.+..+.. +-....|.+|...-.+.|+.++|+++|++..
T Consensus 493 ~~----~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PR----EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cc----cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 10 0111111 111111111111 255666666666655542 1123345555555566666666666665544
No 57
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=2.3e-09 Score=99.96 Aligned_cols=450 Identities=15% Similarity=0.094 Sum_probs=233.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAEN 283 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 283 (806)
...++..|+.+++.-...+-+....+-.-+..++...|++++|..++..+.+.+ .++...+..|.-++.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 344555555555544433222222233334455566666666666666665533 2455555556555556666666665
Q ss_pred HHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037510 284 MLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWN 363 (806)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 363 (806)
+..... .++.....+.....+.++-++-..+.+.+... ..---+|.......-.+++|++++.+....
T Consensus 113 ~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 113 IAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 544322 23334444445555566655555555544332 122233444444445667777777766554
Q ss_pred CCCChhcHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 364 LRPDSFSFNTLV-DGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYC 442 (806)
Q Consensus 364 ~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 442 (806)
.|+....|..+ -+|.+..-++-+.++++--+++ ++.+....+..+....+.=.-..|.+-...+.+.+... |
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 24444444433 3445566666666666666554 22233344444433333333333444344444432211 1
Q ss_pred HHHHHHHhc-----CChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 443 TLLDILFNK-----GDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDG 517 (806)
Q Consensus 443 ~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (806)
..+.-+++. ..-+.|++++-.+.+. -| ..--.++-.|.+++++.+|..+.+++.- .++.-|-.-.-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHH
Confidence 112222222 2446677766555543 12 2233455667888999999888877642 223333222223
Q ss_pred HHhcCC-------hHHHHHHHHHHHhcccChhhhhcCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhH
Q 037510 518 YCKVGN-------LEEAFKIKNLMERREILPSMEKEAIVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVT 589 (806)
Q Consensus 518 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 589 (806)
+...|+ ..-|...|... ...+..-| +.--......+.-..++++.+..+..+...-...|.+.
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlV---------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLV---------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHh---------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333333 33444444443 33332222 22334455556666677777777777665433333333
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhH
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDA 669 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 669 (806)
+ .+..+++..|++.+|.++|-+.....++.+..-...+..+|.+.|+++.|..++-++-..+
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~----------------- 458 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS----------------- 458 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch-----------------
Confidence 3 4667777788888888888776544333333333455677788888888877665542211
Q ss_pred HHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhH
Q 037510 670 QKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTY 726 (806)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 726 (806)
........+..-|.+.+.+--|-+.|+.+.. ..|+..-|
T Consensus 459 ----------------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 459 ----------------ERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 0112334445667777777777777877777 56666555
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.6e-10 Score=110.07 Aligned_cols=290 Identities=16% Similarity=0.128 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 417 GDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
|++..|+++..+..+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..-.++....-+....+...|+.+.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555544443322 223334444444455555555555555555422334444445555566666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
+++.+.+ +-+........++|.+.|++.....+...+ .+.+.-.+...-
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L---------~ka~~l~~~e~~--------------------- 225 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKL---------RKAGLLSDEEAA--------------------- 225 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHH---------HHccCCChHHHH---------------------
Confidence 6666655 345556666666666677766666666666 232222221110
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 577 EMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 577 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
++ ...+|..+++-....+..+.-...|++.-.+ .+.++..-.+++.-+.++|+.++|.++.++..++...|+
T Consensus 226 ~l-------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 226 RL-------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HH-------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 00 1112333333333333333323333333222 233444444455555555666666666655555554431
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~ 735 (806)
. ...-.+.+-++.+.=++..++..+ ..|+. ..+.+|+..|.+
T Consensus 298 ----------------------------------L-~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 298 ----------------------------------L-CRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALK 340 (400)
T ss_pred ----------------------------------H-HHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHH
Confidence 0 011123344444444444454444 23332 345555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.+.|.+|.+.|+.+++ ..|+..+|+.+.++|.+.|+.++|.+..++..
T Consensus 341 ~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 341 NKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6666666666655555 44555555555566666666655555555543
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.51 E-value=6.7e-09 Score=107.28 Aligned_cols=507 Identities=15% Similarity=0.068 Sum_probs=279.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDG---YVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEE 280 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (806)
+.++.+.++.-+......++..+..++..+-.. |...|+.+++ .++..+.+. ..|....+.+.+..
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es-~i~Re~~~d~ilsl--------- 307 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEES-LIPRENIEDAILSL--------- 307 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhh-ccccccHHHHHHHH---------
Confidence 445566666666666666666666555554332 3344555555 333322222 21222222221111
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 360 (806)
+-+++++... .+..|...|..+.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++.-.
T Consensus 308 -m~~~~k~r~~-~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 308 -MLLLRKLRLK-KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred -HHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 1122222222 34457777777777888888888888888877654332 56677778888888888888888887655
Q ss_pred hCCCCCC-hhcHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCcchHHHHHHHHHhc-----------CCHHHHH
Q 037510 361 DWNLRPD-SFSFNTLVDGYC-RECDMTEAFRLCAEMLRQ--GI--EPSVVTYNTLLKGLCRV-----------GDVDEAL 423 (806)
Q Consensus 361 ~~~~~~~-~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~-----------~~~~~a~ 423 (806)
...-.|+ ...+...-..|. +-+..+++++...+.+.. +. ......|..+.-+|... ....+++
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 4321233 333332223333 245666666666665542 11 11233344444443321 1133455
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 424 HLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 503 (806)
+.+++..+.+.. |....-.+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+.-
T Consensus 465 qale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 566666554321 2233333444455666777777777777766545566667766666777777777777776655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 037510 504 CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL 583 (806)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 583 (806)
..|......-+..-...++.++++.....+.. .|... ......++-.........+.-.--
T Consensus 544 -~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~-----------------~we~~-~~~q~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 544 -GDNHVLMDGKIHIELTFNDREEALDTCIHKLA-----------------LWEAE-YGVQQTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred -hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH-----------------HHHhh-hhHhhhhhhhhhhhhhcccccCcc
Confidence 11111111112222234455555444333210 00000 000001111111111111110000
Q ss_pred CC-C-HhHHHHHHHHHHccC---ChHHHHHHHHHHHHcCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 584 YP-N-IVTYGALISGWCDAG---MLNKAFKAYFDMIEKGF--SPN------VAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 584 ~p-~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+| + ..++..+..-....+ ..+.. +..... .|+ ...|......+.+.+..++|...+.++.+
T Consensus 605 q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 11 1 112222211111000 01111 111111 122 23455666778888999999988888876
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTL 729 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 729 (806)
..+. ....|...+..+-..|...+|.+.|..... +.|+.+ +..++
T Consensus 679 ~~~l--------------------------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 679 IDPL--------------------------------SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred cchh--------------------------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 5422 455777788888899999999999999999 889986 89999
Q ss_pred HHHHHhcCCHHHHHH--HHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 730 IHGYAAVGDINEAFN--LRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 730 ~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+.+.|+..-|.. ++..+++ +.| ++..|..|+..+.+.|+.++|.+-|.-..+
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999998777777 9999999 556 888999999999999999999999998766
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.3e-10 Score=108.99 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=207.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhc
Q 037510 486 MGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKS 565 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 565 (806)
.|++.+|++.+.+..+.+ +.....|..-+.+--+.|+.+.+-.++.+. .+..-.++...+-+........
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~ea---------ae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEA---------AELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH---------hccCCCchHHHHHHHHHHHHhC
Confidence 588999998888877776 223455666677778888999998888877 4444456667777778888889
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCH
Q 037510 566 RELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV-------AICSKLVSTLCRLGKI 638 (806)
Q Consensus 566 ~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~ 638 (806)
|+++.|..-++++.+.+ +-++........+|.+.|++.....+...+.+.|.-.+. .+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999888888874 234566777788899999999999999999988765543 4677777766666666
Q ss_pred HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 718 (806)
+.-...++.....- +.++..-.+++.-+...|+.++|.++..+..+++
T Consensus 246 ~gL~~~W~~~pr~l--------------------------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 246 EGLKTWWKNQPRKL--------------------------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred hHHHHHHHhccHHh--------------------------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 66666777765431 1245566778888999999999999999999988
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 719 FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 719 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
..|...+ ...+.+-++.+.=++..++-.+. ...++-.+.+|+.-|.+.+.+.+|.++|+...+ ..|+..+|..
T Consensus 294 ~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~ 366 (400)
T COG3071 294 WDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAE 366 (400)
T ss_pred cChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHH
Confidence 7777332 24456778888888888887773 233668889999999999999999999998887 7899999998
Q ss_pred HHHhhhc
Q 037510 799 LIDGYCK 805 (806)
Q Consensus 799 li~~~~~ 805 (806)
+-++|-+
T Consensus 367 la~~~~~ 373 (400)
T COG3071 367 LADALDQ 373 (400)
T ss_pred HHHHHHH
Confidence 8777643
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.6e-09 Score=98.68 Aligned_cols=458 Identities=12% Similarity=0.049 Sum_probs=214.4
Q ss_pred HHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 129 LKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
+.-+...+++..|+.+++.-...+-+-...+-.-+..++.+.|++++|...|.-+... -.|+...+-.+..+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4445566778888887776654433222223333455666777777777777766653 344555555555555566777
Q ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 209 EKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+|..+-.... .+...-..|++.-.+.|+-++-..+.+.+.. ...--.+|.......-.+++|++++++.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655432 1222333444455566665555555544433 2233444555555555667777777776
Q ss_pred HhcCCCCCChHhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCC
Q 037510 289 KEEDDVIVDEYAYGVLI-DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPD 367 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 367 (806)
... .|+-...+..+ -+|.+..-++-+.++++-..+. ++.+....|.......+.=.-..|..-.+++.+.+-.
T Consensus 178 L~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 178 LQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred Hhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 654 22333333322 2345556666666666655554 2223334443333333322222222222332222100
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 368 SFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDI 447 (806)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (806)
. -..+.-+++++- .-..+-+.|++++-.+.+. . +.+-..|+-.
T Consensus 252 --~-~~f~~~l~rHNL------------------------------VvFrngEgALqVLP~L~~~--I--PEARlNL~iY 294 (557)
T KOG3785|consen 252 --E-YPFIEYLCRHNL------------------------------VVFRNGEGALQVLPSLMKH--I--PEARLNLIIY 294 (557)
T ss_pred --c-chhHHHHHHcCe------------------------------EEEeCCccHHHhchHHHhh--C--hHhhhhheee
Confidence 0 111222222210 0011223333333333322 1 1122233334
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 037510 448 LFNKGDFYGAVKLWNNILARGFYKNTITFNTMIK-----GLCKMGKMTEAQKIFDKMKELGCLPNI-ITYRTLSDGYCKV 521 (806)
Q Consensus 448 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 521 (806)
|.++++..+|..+..++... .|-......++. -........-|.+.|...-+.+..-|. .--.++...+.-.
T Consensus 295 yL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 44555555555544443211 111111111111 111112234455555444333332222 2233344445555
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHcc
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTY-GALISGWCDA 600 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~ 600 (806)
.++++.+.+++.+ ...-...|...+ .+..+.+..|.+.+|+++|-......++ |..+| ..|..+|.+.
T Consensus 373 ~qFddVl~YlnSi---------~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 373 FQFDDVLTYLNSI---------ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHH---------HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 5666666666655 222222222222 3566666677777777777655543333 33334 3344566677
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVA-ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
+..+.|++++-++ +.+.+.. ....+.+-|.+.+.+--|-+.|+.+...++.|+
T Consensus 442 kkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 442 KKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred CCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 7777766554333 2222332 233344556677777777777777766665553
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.5e-10 Score=106.61 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=161.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChhHHHHHHHHHHhcCCHhH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM---NLLICNSLINGYCKLGQVCE 351 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 351 (806)
.++.++|.++|-+|.+. .+....+..+|.+.|-+.|.++.|+++.+.+.++.--+ .......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45667777777777664 22233445566667777777777777777766542111 12244556677778888888
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCCHHHHHHHHH
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSV----VTYNTLLKGLCRVGDVDEALHLWL 427 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~ 427 (806)
|+.+|..+.+.+ ..-......|+..|-+..+|++|++.-+++.+.|..+.. ..|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888777644 333456677788888888888888888887776544332 234455555556677888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 428 MMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
+..... +..+..-..+.+.+...|+++.|++.|+.+.+.+..--..+...|..+|.+.|+.++...++..+.+.. +.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 877753 224445556777788888888888888888877544445566777788888888888888888877753 33
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHH
Q 037510 508 IITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 508 ~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
...-..+.+......-.+.|..++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHH
Confidence 333333444333333344444443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.2e-10 Score=107.15 Aligned_cols=286 Identities=15% Similarity=0.134 Sum_probs=146.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCh
Q 037510 451 KGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN------IITYRTLSDGYCKVGNL 524 (806)
Q Consensus 451 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~ 524 (806)
..+.++|.+.|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++-..+.+. || ......+..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 455666666666666542 223333445566666666666666666666553 33 12334455556666666
Q ss_pred HHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHcc
Q 037510 525 EEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV----TYGALISGWCDA 600 (806)
Q Consensus 525 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~ 600 (806)
|.|..+|..+ .+.+ .--......|+..|-+..+|++|+++-.++.+.+-++..+ .|.-+...+...
T Consensus 124 DRAE~~f~~L---------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 124 DRAEDIFNQL---------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred hHHHHHHHHH---------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 6666666655 1111 1123344556666666666666666666666654443322 233344444455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhh
Q 037510 601 GMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESA 680 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (806)
.+++.|...+.++.+.+ +.....-..+.+.....|+++.|.+.++.+.+.++.-
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y------------------------- 247 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY------------------------- 247 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-------------------------
Confidence 56666666666666542 2233333444555566666666666666666554221
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 681 RSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 681 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
-+.+...|..+|.+.|+.++....+..+.+. .+....-..+...-....-.+.|..++.+-+. -+|+...
T Consensus 248 ------l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~g 317 (389)
T COG2956 248 ------LSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRG 317 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHH
Confidence 1235555666666666666666666666663 23332222232222222223444444444333 2466665
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 037510 761 YNSLVSGLC---NSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 761 ~~~l~~~~~---~~g~~~~A~~~~~~m~~ 786 (806)
+..|+..-. ..|+..+-+..+++|+.
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 555554332 22444555555555553
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=8.9e-09 Score=104.22 Aligned_cols=457 Identities=14% Similarity=0.103 Sum_probs=223.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKR 354 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (806)
.+++...+++.+.+.+.. +....|.....-.++..|+-++|........+..+. +.+.|..+.-.+....++++|+.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 344444444444444431 112222332223334445555555554444443222 33444444444444455555555
Q ss_pred HHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037510 355 VLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC- 433 (806)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 433 (806)
.|+.....+ +.|...|.-+.-.-.+.++++.....-.+..+.. +.....|..+..+..-.|+...|..+.+...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555554443 3344444444444444455554444444444431 1122344455555555555555555555554432
Q ss_pred CCCChhhHHHH------HHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 434 VCPNEVGYCTL------LDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPN 507 (806)
Q Consensus 434 ~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 507 (806)
..|+...+... .....+.|..+.|.+.+...... +......-..-...+.+.+++++|..++..+...+ ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 12333333221 12333455566666555544332 11111122334455667777888888888777764 55
Q ss_pred HHHHHHHH-HHHHhcCChHHHH-HHHHHHHhcccChhhhhcCCCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 508 IITYRTLS-DGYCKVGNLEEAF-KIKNLMERREILPSMEKEAIVPSIDMYNYL-ISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 508 ~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
..-|.... .++.+..+.-++. .+|..... ..|....-..+ +.......-.+..-+++..+.++|++
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~-----------~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSE-----------KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh-----------cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 54444433 3333333333333 44444311 01110000000 01111111223344555666667765
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIE----KG----------FSPNVA--ICSKLVSTLCRLGKIDEANIFLQKM 648 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~ 648 (806)
+-... +...|-.....+--.++...+.. .| -+|... ++..++..+.+.|+++.|..+++.+
T Consensus 321 ~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 53332 22222221111100111111110 00 134433 4445677788899999999999998
Q ss_pred hhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 037510 649 VDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYST 728 (806)
Q Consensus 649 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 728 (806)
++.-++ -+..|..-...+...|++++|...+++..+.+ .||...=.-
T Consensus 398 IdHTPT--------------------------------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 398 IDHTPT--------------------------------LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred hccCch--------------------------------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 876422 23355556678889999999999999998843 234332224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--Chh----cHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 729 LIHGYAAVGDINEAFNLRDEMLKINLVP--NIA----TYNS--LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~----~~~~--l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-+.-..+.++.++|.++.....+.|... +.. .|.. =+.+|.++|++.+|++=|..+.+
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 4445567789999999998888765311 111 1111 13568899999888887766543
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=5.4e-07 Score=95.74 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=112.1
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.+..|+.+..+-.+.|.+.+|++-|-++ .|+..|..+++...+.|.+++-.+++..+.++.-.|.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--------- 1167 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--------- 1167 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---------
Confidence 3456888888877888888887766432 3677888888888888999888888887777655442
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 745 (806)
+=+.|+-+|++.+++.+-.+++ ..|+..-...+++-|...|.++.|.-+
T Consensus 1168 ------------------------id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1168 ------------------------IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred ------------------------chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 3355778888888887766555 458887778888888888888877766
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
|... ..|..|...+...|.+..|....++. .+..||+.+--+|
T Consensus 1217 y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1217 YSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred HHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 6553 34556667777777777777655543 3455676665555
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=2.6e-08 Score=100.95 Aligned_cols=424 Identities=16% Similarity=0.135 Sum_probs=273.9
Q ss_pred hcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 037510 345 KLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALH 424 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 424 (806)
..+++...+...+.+.+. .+....+.....-.++..|+.++|.+..+.....++. +.++|..+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666666552 2333344444444556678888888888887776544 67788888777777888999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037510 425 LWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG- 503 (806)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 503 (806)
.|+..+..+ +.|...+.-+.-.-.+.++++..........+.. +.....|..++.+..-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999888863 3467777777777778888888888888887752 3455678888888888999999999999887654
Q ss_pred CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 504 CLPNIITYRTLS------DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAE 577 (806)
Q Consensus 504 ~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 577 (806)
-.|+...+.... ....+.|..++|.+.+...+ ..+......-..-...+.+.+++++|..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e----------~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE----------KQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh----------hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 245655544332 34457788888888776542 11122222233455678899999999999999
Q ss_pred HHHCCCCCCHhHHHHHH-HHHHccCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 578 MQTMGLYPNIVTYGALI-SGWCDAGMLNKAF-KAYFDMIEKGFSPNVAICSKL-VSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 578 ~~~~g~~p~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
+... .||..-|.... .++.+-.+..++. .+|...-+. .|.......+ +.......-.+..-+++...++.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9987 57776665544 4443333334444 556555543 2222111111 11111222334445566666676654
Q ss_pred CChhhhhhh--hhh--hhHHHHHhhhHHh-----------hhcCCCCChHHHH--HHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 655 PDLKYMASS--AIN--VDAQKIAMSLDES-----------ARSLCVPNYVVYN--IVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 655 p~~~~~~~~--~~~--~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+-.....+- +.. .-..+....+... ....-+|....|. .++..+-+.|+++.|...++.++.
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId- 399 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID- 399 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-
Confidence 321111100 000 0000111111110 1111256665554 467788899999999999999998
Q ss_pred CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 718 GFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 718 g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
..|+.+ -|..-+..+...|++++|...++++.+.. .||...-..-+.-..++.+.++|.++.....+.|.
T Consensus 400 -HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 -HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred -cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 679886 77788899999999999999999999854 45655544555666789999999999999888765
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.6e-08 Score=101.23 Aligned_cols=470 Identities=15% Similarity=0.115 Sum_probs=226.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCC
Q 037510 234 IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGK 313 (806)
Q Consensus 234 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 313 (806)
++.+...|++++|.+...++...+ +.+..++..-+-++.+.+++++|+.+.+.-... ..+...+.--..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHccc
Confidence 455666777777777777777655 245556666666667777777777554432211 1111111111223335677
Q ss_pred hHHHHHHHHHHHHCCCCC-ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEM-NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
.++|+..++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+. + .+...+++-+-.- ..+... .
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~--~a~l~~-~ 162 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAV--AAALQV-Q 162 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHH--HHhhhH-H
Confidence 777777666 2222 222444445556667777777777777665431 1 1222221111000 000000 0
Q ss_pred HHHHCCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 037510 393 EMLRQGIEPSVVTYNTLL---KGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGF 469 (806)
Q Consensus 393 ~m~~~g~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 469 (806)
.+......| ..+|..+. ..+...|++.+|+++++...+.+-.. + ..++.. .+ ++
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l-~~~d~~--eE--------ei 219 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------L-EDEDTN--EE--------EI 219 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------h-cccccc--hh--------hH
Confidence 111111122 22333333 23445666666666666653321000 0 000000 00 00
Q ss_pred CCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCh-H-HHHHHHHHHHhcc--cC
Q 037510 470 YKNT-ITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITY----RTLSDGYCKVGNL-E-EAFKIKNLMERRE--IL 540 (806)
Q Consensus 470 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~-~-~A~~~~~~~~~~~--~~ 540 (806)
.... .+--.+...+-..|+.++|..++...++.. ++|.... |.++.. ....++ + .++..++...... +.
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHH
Confidence 0000 011223445556677777777777766655 3343221 122111 111111 1 1111111110000 00
Q ss_pred hhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH--HccCChHHHHHHHHHHHHcCC
Q 037510 541 PSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGW--CDAGMLNKAFKAYFDMIEKGF 618 (806)
Q Consensus 541 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~ 618 (806)
..+........+..-+.++..| .+..+.+.++..... +..|... +..++..+ ++.....+|.+++....+...
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 0000000000111112222222 222333333322222 1233332 33343332 233357788888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQ--------KMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVV 690 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (806)
.-...+....+......|+++.|.+++. .+.+.+..| .+
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---------------------------------~~ 419 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---------------------------------GT 419 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---------------------------------hH
Confidence 2234556666777889999999999999 333333332 34
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC--CCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLT--GFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
-..+...+.+.++.+.|..++.+.+.. .-.+.. .++.-++..-.+.|+-++|..+++++++.+ .+|..+...+
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~l 498 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQL 498 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 555677778888877787777776642 111222 244455555567799999999999999853 4578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m 784 (806)
+.+|++. +.+.|..+-.++
T Consensus 499 V~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 499 VTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhc-CHHHHHHHhhcC
Confidence 8888876 678887776664
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=2.6e-10 Score=110.68 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=169.5
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 550 PSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 550 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345677788999999999999999999998763 3346677888889999999999999999999864 44667888889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
..+...|++++|...++++......+ .....+..++.++...|++++|..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYP------------------------------QPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccc------------------------------cchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999998753221 234567778899999999999999
Q ss_pred HHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 710 IFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 710 ~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+++..+ ..|+. ..+..++..+...|++++|...++++.+. ...++..+..++..+...|+.++|..+.+.+..
T Consensus 157 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999998 56664 58889999999999999999999999985 234667777888899999999999999988875
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.3e-06 Score=90.98 Aligned_cols=555 Identities=17% Similarity=0.156 Sum_probs=304.1
Q ss_pred CHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCH-HHHHHHHHHHHHcCChhhHHHHH
Q 037510 67 NIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSP-TVFDMILKIYAQKGMLKNALHVF 145 (806)
Q Consensus 67 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 145 (806)
+-..|..|++.+.+.++++-|.-.+..|-.... -..++++ .-++ +.-..+.-.-...|++++|..+|
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg--------aRAlR~a----~q~~~e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG--------ARALRRA----QQNGEEDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh--------HHHHHHH----HhCCcchhhHHHHHHHHHhhHHHHHHHH
Confidence 446789999999999999999888887743210 1122222 1122 22222233335679999999999
Q ss_pred HHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCc
Q 037510 146 DNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFEL 225 (806)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 225 (806)
++-... ..|=..|-..|.+++|.++-+.--+ +. =..||..-..-+-..++.+.|+++|++....
T Consensus 824 r~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~h---- 887 (1416)
T KOG3617|consen 824 RQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVH---- 887 (1416)
T ss_pred HHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----
Confidence 987763 3344556778999999988764322 22 1346666677777788899999998864321
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHH
Q 037510 226 NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLI 305 (806)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 305 (806)
--.++..|. .+....+...+++ .|...|.-....+-..|+++.|+.+|...++ |..++
T Consensus 888 afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~V 945 (1416)
T KOG3617|consen 888 AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMV 945 (1416)
T ss_pred HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhhe
Confidence 111111111 1222222233332 2445566666666778899999988887653 55677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcC---
Q 037510 306 DGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCREC--- 382 (806)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 382 (806)
...|-.|+.++|-++-++- | |......|.+.|-..|++.+|...|.+... +...|+.|-.++
T Consensus 946 rI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred eeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 7788888888888876643 2 667777888888888999888888866532 333333222221
Q ss_pred ------------CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH--------HHHc--CCCCChhh
Q 037510 383 ------------DMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLM--------MLKR--CVCPNEVG 440 (806)
Q Consensus 383 ------------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~ 440 (806)
+.-.|...|++. |.. ....+..|-+.|.+.+|+++--+ ++.. ....|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 122223333322 111 22233455566666666544221 1111 22345666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCH----HHHHHHH
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE-LGCLPNI----ITYRTLS 515 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~----~~~~~l~ 515 (806)
.+...+.++...+++.|..++-...+ |...+ .+|+..++.-..++-+.|.- ++-.|+. .....+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~---------~~~Al-qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLARE---------FSGAL-QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHH-HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 77777777777788887777655543 22222 23444444444444444421 1112333 3466677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHH---------H----HHHHHHCC
Q 037510 516 DGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVD---------L----LAEMQTMG 582 (806)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~----~~~~~~~g 582 (806)
..|.++|.+..|.+-|...- + --..++++.+.|+.++..- + -+-++...
T Consensus 1153 e~c~qQG~Yh~AtKKfTQAG---------d---------Kl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlD 1214 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAG---------D---------KLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLD 1214 (1416)
T ss_pred HHHHhccchHHHHHHHhhhh---------h---------HHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcc
Confidence 88889999988887776541 0 0123445556665443210 0 01122233
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 583 LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 583 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
.+.++.+...++..|.+..-++.--..|.....- ....|..+-. ..|-.++|.+.+.++.++.....
T Consensus 1215 Wq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t------ 1281 (1416)
T KOG3617|consen 1215 WQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTT------ 1281 (1416)
T ss_pred cccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHH------
Confidence 4455556555555554433333322222222111 1111111111 13455666666666665432110
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH-hcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcC
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC-KSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVG 737 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g 737 (806)
....+++ +..-+-..+.... -..+..+.+.-.+.|++....||.+ .|..|+..|....
T Consensus 1282 ---------~l~~Lq~--------~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k 1344 (1416)
T KOG3617|consen 1282 ---------GLDALQE--------DLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRK 1344 (1416)
T ss_pred ---------HHHHHHH--------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhh
Confidence 0011110 1111111222211 1125666666777777765555543 6788899999999
Q ss_pred CHHHHHHHHHHHHHc
Q 037510 738 DINEAFNLRDEMLKI 752 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~ 752 (806)
+|..|.+.+++|..+
T Consensus 1345 ~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1345 NYKPAYRALTELQKK 1359 (1416)
T ss_pred hccHHHHHHHHHhhc
Confidence 999999999999874
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=8.7e-11 Score=108.03 Aligned_cols=235 Identities=15% Similarity=0.088 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV 588 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 588 (806)
..-..+..+|.+.|-+.+|.+.++.. ....|-+.+|..|...|.+..++..|+.++.+-.+. .|-.+
T Consensus 224 wWk~Q~gkCylrLgm~r~Aekqlqss-----------L~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~V 290 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSS-----------LTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDV 290 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHH-----------hhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchh
Confidence 33456677777777777777777643 334456667777777777777788888777777665 44444
Q ss_pred HH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhh
Q 037510 589 TY-GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINV 667 (806)
Q Consensus 589 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 667 (806)
|| ..+...+...++.++|.++|+...+.. +.++.....+...|.-.++++.|+.+++++++.|..
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~------------- 356 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ------------- 356 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------
Confidence 44 445566777788888888888877752 445666666677777778888888888888887754
Q ss_pred hHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHH
Q 037510 668 DAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~ 745 (806)
++..|+.++-+|.-.+.++-++.-|++.+..--.|+.. .|..+.......||+.-|.+.
T Consensus 357 -------------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc 417 (478)
T KOG1129|consen 357 -------------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC 417 (478)
T ss_pred -------------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH
Confidence 56677778777778888888888888877754456553 677888777888888888888
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
|+-++..+ ..+...++.|...-.+.|++++|..+++.... +.|+
T Consensus 418 frlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 418 FRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcc
Confidence 88777642 22556778887777788888888888887766 4554
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=1.1e-09 Score=112.67 Aligned_cols=218 Identities=23% Similarity=0.216 Sum_probs=148.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCC-CC-HH
Q 037510 558 LISVAFKSRELTSLVDLLAEMQTM-----G-LYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIE-----KGFS-PN-VA 623 (806)
Q Consensus 558 l~~~~~~~~~~~~a~~~~~~~~~~-----g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~ 623 (806)
+...|...+++++|..+|+++... | ..| -..+++.|..+|.+.|++++|...++++++ .|.. |+ ..
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 444555555555555555554431 1 112 234667777788888888888877777664 1211 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFD---FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
.++.++..++..+++++|..++++..+.- +.++. +.-.-+++.|...|.+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~---------------------------~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN---------------------------VNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc---------------------------hHHHHHHHHHHHHHHH
Confidence 45667777888999999999999776531 11110 0123478999999999
Q ss_pred cCChhhHHHHHHHHHHC-----C-CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----hhcHHHHHHH
Q 037510 701 SGNVTDARRIFSALLLT-----G-FSPD-NFTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLVPN----IATYNSLVSG 767 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~-----g-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~ 767 (806)
.|++++|.+++++++.. | ..+. ...++.|+..|.+.+++.+|.++|.+...- -+.|+ ..+|..|+..
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 99999999999998864 1 1233 247889999999999999999999987651 12332 3588999999
Q ss_pred HHhcCCHHHHHHHHHHHHH------CCCCCCHhhHHHHHHh
Q 037510 768 LCNSGELDRAKRLFCKLRQ------KGLTPTVVTYNILIDG 802 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~------~g~~p~~~~~~~li~~ 802 (806)
|.+.|++|.|.++.+.+.. .+..|+.........-
T Consensus 460 Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLAD 500 (508)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhH
Confidence 9999999999999888752 2455666665555443
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.34 E-value=3.1e-07 Score=97.68 Aligned_cols=643 Identities=14% Similarity=0.041 Sum_probs=344.3
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037510 108 WDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
+..++++.+-...-..+|..|...|+...+...|.+-|++..+.+.. +..++-.....|.+..+++.|..+.-..-+..
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 34556665555556678999999999888999999999999887653 77788999999999999999998843332211
Q ss_pred CC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037510 188 IV-PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYT 266 (806)
Q Consensus 188 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 266 (806)
.. .-..-|....-.+.+.++...|..-|+...+.. +.|...|..|+.+|.++|.+..|.++|.+..... |+ ..|.
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~ 632 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYG 632 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHH
Confidence 00 011122234444667888999999999988875 4588899999999999999999999999888753 22 2222
Q ss_pred H--HHHHHHhcCCHHHHHHHHHHHHhcC-----CCCCChHhHHHHHHHHHhcCChHH-------HHHHHHHHHHCCCCCC
Q 037510 267 T--LTKGYCKQHKMEEAENMLRRMKEED-----DVIVDEYAYGVLIDGYCKVGKVDE-------AIRVLNEMLKTGLEMN 332 (806)
Q Consensus 267 ~--li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~-------a~~~~~~~~~~~~~~~ 332 (806)
. .....|..|.+.+|+..+....... +..--..++-.+...+...|-..+ +++.|.-........+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2 2334567788999988887765431 111112222222222222332233 3333332222221112
Q ss_pred hhHHHHHHHHHH-----------------------hcCCH---h---HHHHHHHHHhhCCCCCChhcHHHHHHHHHh---
Q 037510 333 LLICNSLINGYC-----------------------KLGQV---C---EAKRVLRCMGDWNLRPDSFSFNTLVDGYCR--- 380 (806)
Q Consensus 333 ~~~~~~li~~~~-----------------------~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 380 (806)
...|-.+.+++. +.+.. + -+.+.+-.-.+ +..+..+|..++..|.+
T Consensus 713 ~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 713 RLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred HHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHH
Confidence 222222222111 11111 0 01111100000 11223445445444433
Q ss_pred ---c--CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 037510 381 ---E--CDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFY 455 (806)
Q Consensus 381 ---~--g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (806)
. .+...|+..+.+.++.. .-+..+|+.|.-. ...|++.-+...|-+.... .+.+..+|..+.-.+.+..+++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHH
Confidence 1 12235666666666542 1244555555443 6667777777777665554 2336667888888888899999
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKE----LGCLPNIITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
.|...|....... +.+...|-.........|+.-++..+|..--+ .|--++..-|..........|+.++-+...
T Consensus 868 ~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred HhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 9999998888764 44666676666666677888888888876322 232344444544555556677766655555
Q ss_pred HHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHH----HHHHHccCChHHH
Q 037510 532 NLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGAL----ISGWCDAGMLNKA 606 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l----~~~~~~~g~~~~A 606 (806)
+.+....+.-.---.+.+.+...|...+...-..+.+.+|.++..++... ...-+...|+.. ...++..|.++.|
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A 1026 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESA 1026 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhH
Confidence 54432222111122334445666766666666677777776666654321 012233444432 2234455666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCC
Q 037510 607 FKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVP 686 (806)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (806)
...+...-. ..+..+...-+ +..-.++++++.+.|+++....-. ..
T Consensus 1027 ~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~s------------------------------e~ 1072 (1238)
T KOG1127|consen 1027 KKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNS------------------------------ES 1072 (1238)
T ss_pred hhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhccc------------------------------cc
Confidence 443321110 00111111101 113357788888888887753211 01
Q ss_pred C-hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCChhcH
Q 037510 687 N-YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK---IN-LVPNIATY 761 (806)
Q Consensus 687 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~p~~~~~ 761 (806)
+ .+....++.+....+..+.|...+-+.... ..|+..+.-.|...+.--.+-.....+.++..+ .. +.-++...
T Consensus 1073 d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll 1151 (1238)
T KOG1127|consen 1073 DKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL 1151 (1238)
T ss_pred chhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH
Confidence 2 233444555556667777777776666652 234443333333333222222222222222222 10 00011111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 762 NSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
.-..|.+.|+-.-..+.+.+..-. ...|...|..|
T Consensus 1152 --~e~i~~~~~r~~~vk~~~qr~~h~-~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1152 --KELIYALQGRSVAVKKQIQRAVHS-NPGDPALWSLL 1186 (1238)
T ss_pred --HHHHHHHhhhhHHHHHHHHHHHhc-CCCChHHHHHH
Confidence 112355667766666666665541 22334455444
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=8e-08 Score=100.56 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=169.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc---
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKL--- 346 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 346 (806)
..+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+++.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 3445556666666666554332 2222333444455556666666666666666665432 444444444444211
Q ss_pred --CCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 037510 347 --GQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDM-TEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEAL 423 (806)
Q Consensus 347 --g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 423 (806)
.+.+....+++++...- |.......+.-.+.....+ ..+...+..++.+|++ .+++.|-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 23455566666655432 3322222222222221222 2344555556666654 23444444444444444444
Q ss_pred HHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcC
Q 037510 424 HLWLMMLKR----C----------VCPNE--VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMG 487 (806)
Q Consensus 424 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 487 (806)
.++...... + -+|.. .++..+...|...|++++|++++++.++.. +..+..|..-.+.+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 444444321 1 12333 244666778888999999999999888873 334667777888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCC--CHH------HHHHHH
Q 037510 488 KMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVP--SID------MYNYLI 559 (806)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~l~ 559 (806)
++.+|.+.++...+.. ..|...-+-.+..+.+.|+.++|.+++....+ .+..| +.. .....+
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr---------~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR---------EDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC---------CCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999988876 44666667777888899999999998887733 22222 211 113456
Q ss_pred HHHHhcCCHhHHHHHHHHHHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQT 580 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~ 580 (806)
.+|.+.|++..|++.|....+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 788899999888887776654
No 74
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.32 E-value=1.6e-06 Score=89.01 Aligned_cols=602 Identities=14% Similarity=0.114 Sum_probs=315.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhc---------CCCcChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKY---------GCIPSLRSC-NCLLSNLVKNGEGYVALLVYEQMMRVGIVPD 191 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 191 (806)
.+.|+.-...|-+-.+++.|++.|.+--.. .++..++.. ..-...+...|+++.|+.-|-+...
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~------ 734 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC------ 734 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh------
Confidence 345666666666667777777776642211 121122221 2234455666777777766654321
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037510 192 VFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKG 271 (806)
Q Consensus 192 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 271 (806)
.-..+.+-.....+.+|+.+++.+..... -..-|..+.+-|...|+++.|.++|-+.- .++--|..
T Consensus 735 ---~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~m 800 (1636)
T KOG3616|consen 735 ---LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDM 800 (1636)
T ss_pred ---HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHH
Confidence 12345556677888888888888876532 23456677788889999999998886432 35566888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhH
Q 037510 272 YCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCE 351 (806)
Q Consensus 272 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 351 (806)
|.+.|+++.|.++-++.. |.......|-+-..-+-+.|++.+|.++|-... .|+ .-|.+|-+.|..+.
T Consensus 801 y~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 899999999888876653 222334455555666677888888887764332 222 34677788888888
Q ss_pred HHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH---
Q 037510 352 AKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLM--- 428 (806)
Q Consensus 352 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--- 428 (806)
.+++.++-.-. .-..|.-.+..-+-..|++..|.+.|-+.-+ |...++.|...+-|++|.++-+.
T Consensus 869 mirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg 936 (1636)
T KOG3616|consen 869 MIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGG 936 (1636)
T ss_pred HHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhcccc
Confidence 77777654211 1123444556666667777777766644322 34445555555555555444321
Q ss_pred ---------HHHcCCCCCh--------hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHH
Q 037510 429 ---------MLKRCVCPNE--------VGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTE 491 (806)
Q Consensus 429 ---------~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 491 (806)
|..+.+-.+. .....-++..+..+.++-|.++-+-..+.. ...+.-.+...+-..|++++
T Consensus 937 ~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~ed 1013 (1636)
T KOG3616|consen 937 ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFED 1013 (1636)
T ss_pred ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhh
Confidence 0000000000 011112233334445555555544444331 12223345556677899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-------------------HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCC-
Q 037510 492 AQKIFDKMKELGCLPNIITYRT-------------------LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPS- 551 (806)
Q Consensus 492 a~~~~~~~~~~~~~~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~- 551 (806)
|-+.+-+.++.+ .-..||.. .+.++.+.++|..|.++-+. ..|+
T Consensus 1014 askhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~--------------h~~~~ 1077 (1636)
T KOG3616|consen 1014 ASKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA--------------HCEDL 1077 (1636)
T ss_pred hhHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh--------------hChhh
Confidence 988888777654 11122221 12233444444444443221 1222
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHH----------------HH
Q 037510 552 -IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFD----------------MI 614 (806)
Q Consensus 552 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~ 614 (806)
..++..-.+.....|++..|..++-+.. .|+.. +.-|...+.|..|+++-+. ..
T Consensus 1078 l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~ 1148 (1636)
T KOG3616|consen 1078 LADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEAL 1148 (1636)
T ss_pred hHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHH
Confidence 2344444555556677777766654333 34322 2233445555555544332 22
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChh---hh-hhhhhhh-------hHHHHHhhhHHhhhcC
Q 037510 615 EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLK---YM-ASSAINV-------DAQKIAMSLDESARSL 683 (806)
Q Consensus 615 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~-~~~~~~~-------~~~~~~~~~~~~~~~~ 683 (806)
++| ......+-.-..-+-..|++.+|...+-++-+-....+.. |. ...+..+ .++-+..........+
T Consensus 1149 k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~ 1227 (1636)
T KOG3616|consen 1149 KKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDENMEVIGAAGGALDEAG 1227 (1636)
T ss_pred hcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccchhhHHhcchhhhccc
Confidence 222 1233344444555677888888887776653221111100 11 1111111 1111122222222222
Q ss_pred CCCCh-HH------HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hH------------------HHHHHHHHhcC
Q 037510 684 CVPNY-VV------YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TY------------------STLIHGYAAVG 737 (806)
Q Consensus 684 ~~~~~-~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~------------------~~l~~~~~~~g 737 (806)
+..-. .. -.-.|+++|+...+.+|.++-++..-. +.|... .| .+-++.+..++
T Consensus 1228 ~~e~aael~l~f~~~keaida~~~~eewakakqvake~~p~-~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~ 1306 (1636)
T KOG3616|consen 1228 CHEAAAELLLLFDLSKEAIDAFCEAEEWAKAKQVAKELDPE-MEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIEND 1306 (1636)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcc
Confidence 11110 11 112456777777777777776654321 223221 22 23455677788
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 738 DINEAFNLRDEMLKINLVPNIATYNSLV-SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 738 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
+|++|++. +.+.+.+|-..-|.++. ..+.+.|+...|+.++++--...-..+...|+.+.
T Consensus 1307 qwdk~idt---ak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ 1367 (1636)
T KOG3616|consen 1307 QWDKAIDT---AKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIF 1367 (1636)
T ss_pred cHHHHHHH---HHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHH
Confidence 88887765 34456777666665554 35678899999998887643222223344444443
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=2.5e-09 Score=116.38 Aligned_cols=217 Identities=13% Similarity=0.006 Sum_probs=137.0
Q ss_pred CChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 037510 136 GMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFV 215 (806)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 215 (806)
+++++|...+++..+.++. +..++..+...+...|++++|+..|++.++.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578888888888887643 67777788888888888888888888888754 224556777777888888888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037510 216 KEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVI 295 (806)
Q Consensus 216 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 295 (806)
++..+.... +...+..++..+...|++++|...+++......+.++..+..+..++...|+.++|...++++... .+
T Consensus 396 ~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 396 NECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred HHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 888776432 223333444456667888888888887766543234555667777777888888888888776543 22
Q ss_pred CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 296 VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL-EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
.+....+.+...++..| ++|...++.+.+..- .+..... +-..|.-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 23334444555556666 366666666554311 1111111 23334444555555554 555443
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=5e-10 Score=103.14 Aligned_cols=231 Identities=16% Similarity=0.069 Sum_probs=161.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCK 204 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 204 (806)
-..+.++|.+.|++.+|.+.|+...+. .|-+.+|-.|-.+|.+-.++..|+.+|.+-++. ++-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356778888888888888888877764 366777777888888888888888888877663 23344444456667777
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037510 205 EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENM 284 (806)
Q Consensus 205 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 284 (806)
.++.++|.++++...+.. +.++.....+...|.-.++.+.|...+.++.+.|+ -++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 788888888888877653 34555666666667777778888888888887776 4677777777777777777777777
Q ss_pred HHHHHhcCCCCCC--hHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 285 LRRMKEEDDVIVD--EYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 285 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
|.+.... --.|+ ...|..+.......|++..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7776654 22233 235666666666777777777777777665433 4566777776667777777777777766543
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=6.4e-12 Score=86.03 Aligned_cols=50 Identities=46% Similarity=1.049 Sum_probs=42.8
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 756 PNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 756 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 77888888888888888888888888888888888888888888888876
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.7e-08 Score=96.54 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHH--------HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFS--------ALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI--NLVPN 757 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~ 757 (806)
..+.-.++......|+++.|++++. .+.+.+..|-.+ ..+...+.+.++.+.|..++.+++.. .-.+.
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~ 453 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG 453 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc
Confidence 4566677888899999999999999 666655556555 44667788888888888888888762 11222
Q ss_pred hhcHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 758 IATYNSLV----SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 758 ~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
......++ ..-.+.|+-++|..+++++.+. ..+|..+...+|.+|++
T Consensus 454 s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 454 SIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR 504 (652)
T ss_pred chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh
Confidence 22223333 3334779999999999999873 35678888899998875
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.6e-09 Score=109.94 Aligned_cols=251 Identities=18% Similarity=0.178 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-C
Q 037510 439 VGYCTLLDILFNKGDFYGAVKLWNNILAR-----G-FYKNTI-TFNTMIKGLCKMGKMTEAQKIFDKMKEL-----GC-L 505 (806)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~ 505 (806)
.+...+...|...|+++.|+.+++..+.. | ..|... ..+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666666666666666666655543 1 012222 2234556667777777777777766432 21 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 037510 506 P-NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLY 584 (806)
Q Consensus 506 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 584 (806)
| -..+++.|...|.+.|++++|...++.. .+++...... ..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~A-------------------------------------l~I~~~~~~~-~~ 321 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERA-------------------------------------LEIYEKLLGA-SH 321 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHH-------------------------------------HHHHHHhhcc-Ch
Confidence 1 1245556666677777777776665543 2333331111 12
Q ss_pred CCHh-HHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 585 PNIV-TYGALISGWCDAGMLNKAFKAYFDMIEK---GFSPN----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 585 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
|... .++.++..|+..+++++|..++++..+. -+.++ ..+++.+...|...|++++|.+++++++...-...
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 2222 3556667788889999998888877652 12222 46888999999999999999999999886421000
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC----C-CCCCH-HhHHHHH
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT----G-FSPDN-FTYSTLI 730 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~-~~~~~l~ 730 (806)
.....-....++.|...|.+.+++++|.++|.+...- | -.|+. .+|..|+
T Consensus 402 ------------------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 402 ------------------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred ------------------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 0000112346788899999999999999999886532 2 22444 4899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 731 HGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 731 ~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|.+.|+++.|+++.+.+..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998874
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=3.7e-09 Score=115.04 Aligned_cols=267 Identities=15% Similarity=0.043 Sum_probs=188.7
Q ss_pred cChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 037510 155 PSLRSCNCLLSNLVK-----NGEGYVALLVYEQMMRVGIVPD-VFTCSIVVNAYC---------KEKSMEKALDFVKEME 219 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~ 219 (806)
.+..+|...+.+... .+..++|+..|++..+.. |+ ...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 577777666665422 234678999999998853 44 445555554443 2345889999999999
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChH
Q 037510 220 NLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEY 299 (806)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 299 (806)
+.+ +.+...+..+...+...|++++|...|++..+.++ .+...|..+...+...|++++|+..+++..+.++. +..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--Chh
Confidence 875 44778888888899999999999999999998764 35678888999999999999999999999886332 222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHH
Q 037510 300 AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYC 379 (806)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 379 (806)
.+..++..+...|++++|...++++.+...+-++..+..+...+...|+.++|...++++.... +.+....+.+...++
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYC 486 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHh
Confidence 3334444566789999999999998876433356667788888999999999999999876542 233444555666677
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 380 RECDMTEAFRLCAEMLRQG-IEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRC 433 (806)
Q Consensus 380 ~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 433 (806)
..| ++|...++.+.+.. ..+....+ +-..+.-.|+-+.+... +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777 47777777766531 12222222 33444556666666555 7776653
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=2.1e-09 Score=104.26 Aligned_cols=197 Identities=18% Similarity=0.060 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDG 236 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 236 (806)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455556666666666666666666665532 1234445555555555666666666665555543 2234445555555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChH
Q 037510 237 YVSLGDLNGAKRVLEWTCEKGI-SRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVD 315 (806)
Q Consensus 237 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (806)
+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 5555555555555555544211 112233444444445555555555555544443 1122333444444444444444
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHH
Q 037510 316 EAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRC 358 (806)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (806)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444443 122333333344444444444444444433
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.1e-06 Score=91.53 Aligned_cols=249 Identities=16% Similarity=0.090 Sum_probs=146.8
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCCHhHHHHHHHH
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG---------IVPDVFTCSIVVNA 201 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~---------~~~~~~~~~~l~~~ 201 (806)
.|..-|+.|.|.+-.+.+. +...|..|.+.+.+..+.+-|.-.+.-|.... -.|+ .+-..+...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 3566799999988777654 56789999999999999888887776664321 1122 222223333
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEA 281 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 281 (806)
-...|.+++|..++.+..+. ..|=..|...|.+++|.++-+.-..-.+ -.||.....-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 45778999999999998764 3445667888999999998875433222 34666666667778889999
Q ss_pred HHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 282 ENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
++.|++.... --..+..| . .++....+..+.+ .|...|.--..-+-..|+++.|+.+|....+
T Consensus 878 leyyEK~~~h-----afev~rmL-~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 878 LEYYEKAGVH-----AFEVFRML-K-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHhcCCh-----HHHHHHHH-H-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 9988764211 11111111 0 0111111111111 1333333334444455666666666655442
Q ss_pred CCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 362 WNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
|-.+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445555566666666666655432 133444455666666666666666665543
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.1e-07 Score=89.15 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
-+.+...+...|+.+.++.++++.+. ..||....+.|++.+...+.+.+|.+.|..++.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444455555555555555555555 455555555555555555555555555555554
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.3e-07 Score=97.18 Aligned_cols=265 Identities=14% Similarity=0.136 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH-HHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT-CSIVVNA 201 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l~~~ 201 (806)
+..--....+...|++++|++.++.-.+.- .............+.+.|+.++|..+|..+++.+ |+... |..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 344445566677888888888887655432 2234455666777888888888888888888765 44444 4444444
Q ss_pred HHhc-----CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 202 YCKE-----KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDL-NGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 202 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
+... .+.+...++++++...- |.......+.-.+..-.++ ..+...+..+..+|++ .+|+.|-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 4222 24566667777666542 3322222222112221122 2344445555555652 3455555555544
Q ss_pred CCHHHHHHHHHHHHhcC-------------CCCCChH--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 037510 276 HKMEEAENMLRRMKEED-------------DVIVDEY--AYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 340 (806)
.+.+-..+++....... .-+|... ++..+...|...|++++|++.+++.+...+. .+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 44444444444443220 0112221 2233334444455555555555555544211 233444444
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 341 NGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
..|-+.|++.+|.+.++.....+ .-|-..-+-.+..+.+.|+.++|.+++....+.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 55555555555555555444433 223333333444444455555555554444433
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.8e-07 Score=89.58 Aligned_cols=370 Identities=13% Similarity=0.029 Sum_probs=228.0
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcC-ChHHHHHHHHH--------------HHH
Q 037510 121 SPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNG-EGYVALLVYEQ--------------MMR 185 (806)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~--------------m~~ 185 (806)
+.+.-...+.+|...++-+.|+......++. ....--|.|+..+.+.| +..++.--+.+ ..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 3455566777788888888888888777654 22333344444433332 21122211211 111
Q ss_pred CC---------------CCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhCCCHHHHH
Q 037510 186 VG---------------IVPDVFTCSIVVNA--YCKEKSMEKALDFVKEMENL-GFELNVVTYNSLIDGYVSLGDLNGAK 247 (806)
Q Consensus 186 ~~---------------~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 247 (806)
.+ +.|...+...-+.+ .+-.++...|...+-.+... -++.|+.....+..++...|+.++|.
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~ 252 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE 252 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH
Confidence 11 12222222223333 33345555555555444332 24557777888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 248 RVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
..|++....++ -+........-.+.+.|+.+....+...+..... -...-|..-...+....++..|+.+-++.++.
T Consensus 253 ~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 253 DIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 88888776432 1222333334445567777777777777665411 12233444444555677788888887777765
Q ss_pred CCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH
Q 037510 328 GLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN 407 (806)
Q Consensus 328 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 407 (806)
+.. +...|-.-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.+|.-.-+...+. ...+..+.+
T Consensus 330 ~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 330 EPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred Ccc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 322 44445444566777888888888888776653 457788888888888888888888777665543 223444544
Q ss_pred HHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Q 037510 408 TLL-KGLC-RVGDVDEALHLWLMMLKRCVCPN-EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLC 484 (806)
Q Consensus 408 ~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 484 (806)
.+. ..+. ...--++|.++++..+.. .|+ ......+...+...|..++++.+++..+.. .+|....+.|.+.+.
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 442 2222 222346777777776664 343 345667777788888888888888888775 678888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 037510 485 KMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~ 503 (806)
..+.+.+|.+.|......+
T Consensus 483 A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 8888888888888887765
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=1.3e-07 Score=96.89 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=64.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
-....+|.+|+.+++.+.+.. .-..-|..+.+-|...|+++.|.++|.+. ..++..+.+|
T Consensus 742 ai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~------------------~~~~dai~my 801 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA------------------DLFKDAIDMY 801 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc------------------chhHHHHHHH
Confidence 334455566666655555442 12233444555555666666666555432 1234445555
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
.+.|+++.|.++-.+.. |.......|.+-..-+.+.|++.+|.++|-..- .|+. .+..|-+.|..++.+
T Consensus 802 ~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMI 870 (1636)
T ss_pred hccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHH
Confidence 66666666655544433 222233344444444455555555555543221 2221 234455555555555
Q ss_pred HHHHH
Q 037510 643 IFLQK 647 (806)
Q Consensus 643 ~~~~~ 647 (806)
.+.++
T Consensus 871 rlv~k 875 (1636)
T KOG3616|consen 871 RLVEK 875 (1636)
T ss_pred HHHHH
Confidence 54444
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=5.4e-07 Score=95.95 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=131.7
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037510 206 KSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENML 285 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 285 (806)
.+...|+..|-+..+... --...|..|...|+...|...|.+.|++.-+.+. -+..++......|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHH
Confidence 346667766666665431 2356788899999888888899999998887654 46778888899999999999998885
Q ss_pred HHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 037510 286 RRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLR 365 (806)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 365 (806)
-..-+......-...|....-.|.+.++...|..-|+...+..+. |...|..++.+|...|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 444433111111223334445567788888999999888877544 7788889999999999999999999887764 3
Q ss_pred CCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 366 PDS-FSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 366 ~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
|+. ..---.....|..|.+.+|+..+.....
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 432 2222223345678888888888887764
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=1.5e-08 Score=89.44 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=178.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
+...|...|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|+++++.. +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34457888999999999999999999873 2345688889999999999999999999999863 446778899999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
.+|++++|...|++++....-| ....+|..++.+..+.|+.+.|.+.|++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~------------------------------~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYG------------------------------EPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCC------------------------------CcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 9999999999999998763322 1345888899999999999999999999
Q ss_pred HHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 714 LLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 714 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
.++ ..|+.. +.-.+.....+.|++-.|..+++.....+. ++....--.|..-.+.|+.+.|-++=..+.. ..|.
T Consensus 165 aL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~ 239 (250)
T COG3063 165 ALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPY 239 (250)
T ss_pred HHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 999 778874 888999999999999999999999988663 7888887788888899999999999888887 6788
Q ss_pred HhhHHHHH
Q 037510 793 VVTYNILI 800 (806)
Q Consensus 793 ~~~~~~li 800 (806)
..-|....
T Consensus 240 s~e~q~f~ 247 (250)
T COG3063 240 SEEYQTFL 247 (250)
T ss_pred cHHHHhHh
Confidence 77776554
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5.6e-11 Score=81.35 Aligned_cols=49 Identities=49% Similarity=0.828 Sum_probs=25.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 721 PDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
||.++||+++.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3e-07 Score=91.60 Aligned_cols=228 Identities=19% Similarity=0.186 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------H
Q 037510 441 YCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYR-------T 513 (806)
Q Consensus 441 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 513 (806)
...+.+...+..+++.|++.+....... .+..-++....++...|.+.+.........+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4556777777888888888888887764 45555566777788888887777777776665521 122222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh-HHHH
Q 037510 514 LSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV-TYGA 592 (806)
Q Consensus 514 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ 592 (806)
+..+|.+.++++.|+..|.+. ......|+ ...+....+++........-. .|... -...
T Consensus 304 ~g~a~~k~~~~~~ai~~~~ka---------Lte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~ 363 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKA---------LTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEERE 363 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHH---------hhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHH
Confidence 334556667777777777765 22222222 122333344444444443332 22221 1112
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHH
Q 037510 593 LISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKI 672 (806)
Q Consensus 593 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 672 (806)
-...+.+.|++..|++.|.++++.. +.|...|....-+|.+.|.+..|++-.+..++.++
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p------------------- 423 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP------------------- 423 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-------------------
Confidence 2455667888888888888888764 55777888888888888888888888777777642
Q ss_pred HhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhH
Q 037510 673 AMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTY 726 (806)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 726 (806)
+..-.|.-=+.++....+++.|.+.|++.++ ..|+..-+
T Consensus 424 -------------~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 424 -------------NFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 2333444445556666678888888888877 55766533
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1e-07 Score=84.32 Aligned_cols=194 Identities=15% Similarity=0.023 Sum_probs=99.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 037510 198 VVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK 277 (806)
Q Consensus 198 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 277 (806)
+.-+|...|++..|..-+++.++.. +.+..++..+...|.+.|+.+.|.+-|++..+..+ .+....|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 4444555555555555555555543 22344555555555555555555555555555432 244445555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 278 MEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLR 357 (806)
Q Consensus 278 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (806)
+++|...|++.........-..+|..+.-+..+.|+.+.|...|++.++.... .+.+.-.+.....+.|++-.|...++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 55555555555554333333345555555555555555555555555554322 33344445555555555555555555
Q ss_pred HHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 358 CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEML 395 (806)
Q Consensus 358 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 395 (806)
.....+ .++..+.-..|+.--..|+.+.+-+.=.++.
T Consensus 198 ~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555444 2444444444444444555554444444433
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=6.6e-08 Score=95.99 Aligned_cols=208 Identities=14% Similarity=0.002 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 552 IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 552 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.+.|++.++.. +.+...+..++.+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888999999999999999999863 3357889999999999999999999999999863 3357788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...|++++|.+.+++.++.++. ++. .......+...+++++|.+.|
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~--------------------------------~~~-~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN--------------------------------DPY-RALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--------------------------------CHH-HHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999987533 221 111122234567899999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI---N--LVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.... ..|+...+ .......|++.++ +.++.+.+. . +.| ....|..++..+.+.|++++|..+|++..
T Consensus 189 ~~~~~~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEK-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhh-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776642 33443222 2333446666554 345555431 1 112 33578899999999999999999999998
Q ss_pred HCCCC-CCHhhHHHHHH
Q 037510 786 QKGLT-PTVVTYNILID 801 (806)
Q Consensus 786 ~~g~~-p~~~~~~~li~ 801 (806)
+ .. ||.+-+...+-
T Consensus 264 ~--~~~~~~~e~~~~~~ 278 (296)
T PRK11189 264 A--NNVYNFVEHRYALL 278 (296)
T ss_pred H--hCCchHHHHHHHHH
Confidence 7 44 47666665443
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-07 Score=92.27 Aligned_cols=415 Identities=15% Similarity=0.091 Sum_probs=216.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hHhHHHHHHHHHhcCC
Q 037510 235 DGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVD-EYAYGVLIDGYCKVGK 313 (806)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 313 (806)
.+.+..||++.|..+|.+.+...+ +|.+.|..-..+|.+.|++++|++--.+-.+. .|+ ...|+-...++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhccc
Confidence 445677888888888888777665 37777777788888888888887766655544 233 4467777777777888
Q ss_pred hHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHH-----HHHHhcCCHHHHH
Q 037510 314 VDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLV-----DGYCRECDMTEAF 388 (806)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~ 388 (806)
+++|+.-|.+-++.... +...++-+.+++ ..+.+. +.. -.+...|..+. +.+.....+..-+
T Consensus 86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcCCc-hHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 88888888877766432 556666666665 111111 111 01111121111 1111111111111
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCC-------CCChhhHHHHHHHHHhcCC
Q 037510 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK--------RCV-------CPNEVGYCTLLDILFNKGD 453 (806)
Q Consensus 389 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~-------~~~~~~~~~l~~~~~~~g~ 453 (806)
+.+..+ |.. +..+.. .+...+....+.. .+. .|. .-.....-..++
T Consensus 153 ----~~~~~~--p~~------l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d 213 (539)
T KOG0548|consen 153 ----EIIQKN--PTS------LKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIED 213 (539)
T ss_pred ----HHhhcC--cHh------hhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccch
Confidence 111111 110 011111 1111111111111 000 111 000000000000
Q ss_pred hhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037510 454 FYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNL 533 (806)
Q Consensus 454 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 533 (806)
..+-.+. ..-..-...+.....+..+++.|.+.+....+.. .+..-++....+|...|.+.+.....+.
T Consensus 214 ~~ee~~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 214 NTEERRV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred hHHHHHH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 0000000 0011123456666777778888888888887764 3445556666778888888777766655
Q ss_pred HHhcccChhhhhcCCCCCHHHHH-------HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHH
Q 037510 534 MERREILPSMEKEAIVPSIDMYN-------YLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKA 606 (806)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 606 (806)
..+ .|... ..-|+ .+...|.+.++++.+...|++....-..|+. ..+....+++
T Consensus 283 a~E---------~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~ 343 (539)
T KOG0548|consen 283 AVE---------VGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKA 343 (539)
T ss_pred HHH---------HhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHH
Confidence 421 11111 11111 1233555566667777777665543222221 1223334444
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCC
Q 037510 607 FKAYFDMIEKGFSPNV-AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV 685 (806)
Q Consensus 607 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (806)
.+......-. .|+. .-...-+..+.+.|++.+|...+.++++.++.
T Consensus 344 ~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~------------------------------- 390 (539)
T KOG0548|consen 344 LKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE------------------------------- 390 (539)
T ss_pred HHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-------------------------------
Confidence 4444443332 2221 12222355666777888888888777776622
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|...|....-+|.+.|.+..|+.-.+..++ +.|+.. .|.-=+.++....+|++|.+.|.+.++
T Consensus 391 -Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 -DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888888888888888877777777 567664 565556666666777888888877777
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=7.6e-07 Score=81.55 Aligned_cols=316 Identities=14% Similarity=0.049 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHH-HHHHH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSI-VVNAY 202 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~~ 202 (806)
-|+.++..+.+..++.+|++++..-.++.++ +......|..+|....++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3666677778889999999999988887532 7778888999999999999999999999874 565555543 24667
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLID--GYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEE 280 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 280 (806)
.+.+.+..|+.+...|... ++...-..-+. .....+|+..+..+.++....| +..+.+...-...+.|++++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 7889999999999988653 22222111122 2346788999999999887542 45555556666779999999
Q ss_pred HHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCHhHHHHHH
Q 037510 281 AENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLL----ICNSLINGYCKLGQVCEAKRVL 356 (806)
Q Consensus 281 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~ 356 (806)
|.+-|....+-+|..|- ..|+..+. ..+.|+++.|++...+++++|+...+. .-.-.++.-.-.+-..-++.-
T Consensus 163 AvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa- 239 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA- 239 (459)
T ss_pred HHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-
Confidence 99999999998788764 36666554 456789999999999999887642221 111111100000000001110
Q ss_pred HHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037510 357 RCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQ-GIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVC 435 (806)
Q Consensus 357 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (806)
-+..+|.-...+.+.|+++.|.+.+-+|.-. ....|++|...+.-.- -.+++.+...-+.-++....
T Consensus 240 ----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP- 307 (459)
T KOG4340|consen 240 ----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP- 307 (459)
T ss_pred ----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-
Confidence 1123344444566788888888888888432 2345677766554322 23345555555555555533
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037510 436 PNEVGYCTLLDILFNKGDFYGAVKLWNN 463 (806)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 463 (806)
-...|+..++-.||+..-++.|-+++.+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3567888888889988888888887755
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=6.5e-06 Score=77.18 Aligned_cols=367 Identities=12% Similarity=0.081 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH-HHHH
Q 037510 333 LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYN-TLLK 411 (806)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~ 411 (806)
+.-...+...+...|++.+|+..|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. +||-..-. --..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445555556666666666666555432 112222222334455556666666555555553 44432111 1112
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCH
Q 037510 412 GLCRVGDVDEALHLWLMMLKRCVCPN--EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKM 489 (806)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 489 (806)
.+.+.|.++.|..-|+.+++.....+ ...+..++- .+ ..+.....+..+...|+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~--------------~~---------e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL--------------IQ---------EHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh--------------HH---------HHHHHHHHHHHHhcCCch
Confidence 34455566666666655555421110 001110000 00 011122234445566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
..|+..+..+.+.. +-|...|..-..+|...|++..|+.-++.. ..-...+....-.+...+...|+.+
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a----------skLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQA----------SKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHH----------HhccccchHHHHHHHHHHHhhhhHH
Confidence 77777777777754 335566666677777777777777655544 1112234445555566666777777
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
.++...++..+. .||....-.. |-+ +.+..+.++.|. ...+.++|.++++-.+...
T Consensus 241 ~sL~~iRECLKl--dpdHK~Cf~~---YKk---lkKv~K~les~e----------------~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 241 NSLKEIRECLKL--DPDHKLCFPF---YKK---LKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHcc--CcchhhHHHH---HHH---HHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHH
Confidence 777777776664 4543321110 000 111111111111 1223344555555555554
Q ss_pred hCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHH
Q 037510 650 DFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYST 728 (806)
Q Consensus 650 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~ 728 (806)
+..+.-. .-....+..+-.++...|++.+|++.-.+.++ +.||.+ ++.-
T Consensus 297 k~ep~~~----------------------------~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d 346 (504)
T KOG0624|consen 297 KNEPEET----------------------------MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD 346 (504)
T ss_pred hcCCccc----------------------------ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence 4432200 00111233344455555666666666666666 556543 5666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h------------------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 729 LIHGYAAVGDINEAFNLRDEMLKINLVPN-I------------------ATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 729 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~------------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
-..+|.-..+++.|+.-|+++.+.+ ++ . ..|..+ -+-.+.....|-.+.|++|..+ +
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n--~sn~~~reGle~Akrlkkqs~kRDYYKI-LGVkRnAsKqEI~KAYRKlAqk-W 422 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELN--ESNTRAREGLERAKRLKKQSGKRDYYKI-LGVKRNASKQEITKAYRKLAQK-W 422 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHhccchHHHH-hhhcccccHHHHHHHHHHHHHh-c
Confidence 6666666666666666666665522 21 1 112211 1233444556777777777643 6
Q ss_pred CCCHh
Q 037510 790 TPTVV 794 (806)
Q Consensus 790 ~p~~~ 794 (806)
.||..
T Consensus 423 HPDNF 427 (504)
T KOG0624|consen 423 HPDNF 427 (504)
T ss_pred CCccc
Confidence 67643
No 96
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=4.1e-07 Score=90.37 Aligned_cols=94 Identities=14% Similarity=-0.094 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 265 YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 265 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
|..+...|...|+.++|...|++..+. .+.+...|+.+...+...|++++|...|+...+..+. +...+..+...+.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 444444444445555555555444443 1223344444444444555555555555544443222 2334444444444
Q ss_pred hcCCHhHHHHHHHHHhh
Q 037510 345 KLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 345 ~~g~~~~A~~~~~~~~~ 361 (806)
..|++++|.+.|+...+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 44445555444444443
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4.1e-07 Score=83.24 Aligned_cols=353 Identities=13% Similarity=0.055 Sum_probs=184.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNS-LING 342 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~ 342 (806)
-+++.+..+.+..+++.|++++..-.+. .+.+....+.+..+|....++..|-..++.+-... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 3566666667777777777777666554 22255566677777777777777777777776542 33333322 2344
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHH
Q 037510 343 YCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDG--YCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVD 420 (806)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 420 (806)
+.+.+.+.+|+++...|.+. |+...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 55667777777777766652 222221111121 123556666666665554321 3344444444555667777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHH
Q 037510 421 EALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITF----NTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~ 496 (806)
.|.+-|+...+.+--.....|+.. -+..+.|++..|++...+++++|+...+..- .-.+.+- ..|+.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt------- 232 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT------- 232 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch-------
Confidence 777777766664333333444433 3444566677777777777766644322110 0000000 00000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
..|...+ -...++.-...+.+.|+++.|.+.+..|. .......|+.+...+.-.- ..+++.+...-++
T Consensus 233 ~~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmP--------PRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 233 LVLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMP--------PRAEEELDPVTLHNQALMN-MDARPTEGFEKLQ 300 (459)
T ss_pred HHHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCC--------CcccccCCchhhhHHHHhc-ccCCccccHHHHH
Confidence 0000000 12234545556778899999988887773 2222334555554433222 2344545555555
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 037510 577 EMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGF-SPNVAICSKLVSTLC-RLGKIDEANIFLQKMV 649 (806)
Q Consensus 577 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 649 (806)
-+...+. -...|+..++-.||+..-++.|-.++.+-....+ -.+...|+ +++++. ..-..++|.+-+..+.
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555432 3456888888889998888888777644221111 01233333 333333 3456677766665543
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=2.8e-06 Score=88.19 Aligned_cols=200 Identities=11% Similarity=-0.005 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC-cChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCI-PSLR-SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVN 200 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 200 (806)
..+..+...+...|+.+++...+....+.... .+.. ........+...|++++|...+++..+.. +.|...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 34455556666677788877777766554221 1221 22223445667888889988888887753 223333332 22
Q ss_pred HHH----hcCChhHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 201 AYC----KEKSMEKALDFVKEMENLGFELN-VVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 201 ~~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
.+. ..+....+.+.+... ....|+ ......+...+...|++++|.+.+++..+..+ .+...+..+..++...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence 222 234444555554441 112233 34445566677888888888888888888653 3566777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCh--HhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDE--YAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
|++++|...+++........|+. ..|..+...+...|++++|..++++....
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888877652222332 23446677778888888888888887543
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=2.2e-07 Score=95.89 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=179.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 037510 504 CLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL 583 (806)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 583 (806)
.+|-...-..+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..++
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------------emw~~vi~CY~~lg~~~kaeei~~q~lek-- 453 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------------EMWDPVILCYLLLGQHGKAEEINRQELEK-- 453 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--
Confidence 3444455566778888999999999999877 46777889999999999999998888874
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
+|++..|..+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+...+..+-
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--------- 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--------- 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc---------
Confidence 788999999988887777788888888765432 1122233334578899999999887765422
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEA 742 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 742 (806)
-..+|-.++.+..+.++.+.|.+.|..... ..||.. +||++..+|.+.|+-.+|
T Consensus 518 -----------------------q~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 518 -----------------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred -----------------------chhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 456898999999999999999999999999 889986 999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 743 FNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 743 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
...++++.+.+ ..+...+.+.+....+.|.+++|++.+.++..
T Consensus 573 ~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 573 FRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99999999976 45666777777788899999999999998753
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.94 E-value=5.5e-06 Score=85.96 Aligned_cols=200 Identities=15% Similarity=-0.005 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037510 157 LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGI-VPDV-FTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLI 234 (806)
Q Consensus 157 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 234 (806)
...|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44666677777777888887777776655422 1222 112222344567889999999998887763 334444442 2
Q ss_pred HHHH----hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 037510 235 DGYV----SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310 (806)
Q Consensus 235 ~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 310 (806)
..+. ..|..+.+.+.++.... ..+........+...+...|++++|.+.+++..+. .+.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHH
Confidence 2222 23445555555544111 11112334445566778888888888888888875 34456677777888888
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCh--hHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 311 VGKVDEAIRVLNEMLKTGLE-MNL--LICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
.|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888888887765321 222 2455677788888888888888888754
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.1e-07 Score=93.51 Aligned_cols=221 Identities=17% Similarity=0.068 Sum_probs=174.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
..-+.+.|++.+|.-.|+..++.. +-+...|..|...-...++-..|+..+++.++.. +.+......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678899999999999998873 3356789999888889999999999999999863 44678888999999999999
Q ss_pred HHHHHHHHHHhhCCCCCChhhhh--hh--------hhhhhHHHHHhhhHHhhhcC-CCCChHHHHHHHHHHHhcCChhhH
Q 037510 639 DEANIFLQKMVDFDFVPDLKYMA--SS--------AINVDAQKIAMSLDESARSL-CVPNYVVYNIVIAGICKSGNVTDA 707 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 707 (806)
.+|.+.+++-+...+.--+.... .. .-...-.++...+-+..... ..+|+.+...|+-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999999988765322111010 00 01112223333333333333 358889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 708 RRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
++.|+.++. ..|+.. .||-|+..++...+.++|+..|.++++ +.|.. .....|+-.|...|.++||.+.|-..+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999 889875 899999999999999999999999999 78964 466778899999999999999988754
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=5.9e-08 Score=94.53 Aligned_cols=252 Identities=16% Similarity=0.147 Sum_probs=150.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|.+..++.-.+ ........+......+.+++...|+++.++.- + ..+..|.......+...+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i----------~~~~~~~l~av~~la~y~ 76 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---I----------KKSSSPELQAVRLLAEYL 76 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-----------TTSSCCCHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---h----------ccCCChhHHHHHHHHHHH
Confidence 344566666665444 22211111233444556777777776654432 1 122255555554454444
Q ss_pred HhcCCHhHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 563 FKSRELTSLVDLLAEMQTMGLYPNIVTY-GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
...++-+.+..-+++....+..++..++ ......+...|++++|++++.+. .+.......+..|.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 3334444554444443333222222222 22334566788999888877542 3566667778889999999999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH----HhcCChhhHHHHHHHHHHC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI----CKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~ 717 (806)
.+.++.|.+.+- |. +...+..++ ....++.+|..+|+++.+.
T Consensus 151 ~k~l~~~~~~~e---------------------------------D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~ 196 (290)
T PF04733_consen 151 EKELKNMQQIDE---------------------------------DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK 196 (290)
T ss_dssp HHHHHHHHCCSC---------------------------------CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC---------------------------------cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 999999876542 21 222233333 2234689999999998764
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC
Q 037510 718 GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGEL-DRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 718 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~ 792 (806)
..++..+.+.++.++...|++++|.++++++++.. .-++.+...++.+....|+. +.+.+++.++.. ..|+
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~ 268 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPN 268 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTT
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCC
Confidence 45677788999999999999999999999987643 22677888888888888887 677788888876 4554
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.4e-07 Score=93.08 Aligned_cols=261 Identities=15% Similarity=0.166 Sum_probs=175.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 037510 446 DILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLE 525 (806)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 525 (806)
.-+.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34566777777777777777764 4456677777777777777777777777777765 345566666666677777766
Q ss_pred HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHH
Q 037510 526 EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNK 605 (806)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 605 (806)
.|++.++.-. ... |. |..+ ...+ ++...-.. ..+.....+..
T Consensus 371 ~Al~~L~~Wi---------~~~--p~---y~~l--------------------~~a~--~~~~~~~~--~s~~~~~~l~~ 412 (579)
T KOG1125|consen 371 QALKMLDKWI---------RNK--PK---YVHL--------------------VSAG--ENEDFENT--KSFLDSSHLAH 412 (579)
T ss_pred HHHHHHHHHH---------HhC--cc---chhc--------------------cccC--ccccccCC--cCCCCHHHHHH
Confidence 7766665441 100 00 0000 0000 00000000 01111122233
Q ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCC
Q 037510 606 AFKAYFDMI-EKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLC 684 (806)
Q Consensus 606 A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (806)
..++|-++. ..+..+|+.+...|.-.|.-.|++++|...|+.++...+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P------------------------------- 461 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP------------------------------- 461 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-------------------------------
Confidence 344454444 455457888899999999999999999999999998753
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------C
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKIN---------L 754 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~ 754 (806)
.|..+||-|+..++...+.++|+..|+++++ +.|.-+ +...|+-+|...|.+++|.+.|-+++... .
T Consensus 462 -nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 462 -NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred -chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 3788999999999999999999999999999 899987 77889999999999999999999987621 1
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 755 VPNIATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 755 ~p~~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
.++..+|.+|=.++.-.++.|.+...
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHh
Confidence 11234677777777777776655443
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1.5e-05 Score=74.80 Aligned_cols=207 Identities=15% Similarity=0.157 Sum_probs=152.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
+..+...|+...|+.....+.+.. +-|...+..-..+|...|.+..|+.=++...+.. ..+..+...+...+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 345667899999999999998852 3466677777889999999999998888777642 44566777788889999999
Q ss_pred HHHHHHHHHHhhCCCCCChh-hhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 639 DEANIFLQKMVDFDFVPDLK-YMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 639 ~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+.++..+++.++.+ ||+. |... +....++...+.+ +......+++.++++..+...+
T Consensus 240 ~~sL~~iRECLKld--pdHK~Cf~~---YKklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk- 297 (504)
T KOG0624|consen 240 ENSLKEIRECLKLD--PDHKLCFPF---YKKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLK- 297 (504)
T ss_pred HHHHHHHHHHHccC--cchhhHHHH---HHHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999999998865 5543 2211 1111122222211 1234567889999999999988
Q ss_pred CCCCCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 718 GFSPDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 718 g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
..|... .+..+-.++...|++.+|++...++++ +.|| ..++..-..+|.-..++++|+.-|++..+ +.+
T Consensus 298 -~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~ 372 (504)
T KOG0624|consen 298 -NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNE 372 (504)
T ss_pred -cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCc
Confidence 567632 344455667778999999999999998 6774 77888888899999999999999999887 555
Q ss_pred CHh
Q 037510 792 TVV 794 (806)
Q Consensus 792 ~~~ 794 (806)
+..
T Consensus 373 sn~ 375 (504)
T KOG0624|consen 373 SNT 375 (504)
T ss_pred ccH
Confidence 543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.7e-05 Score=93.74 Aligned_cols=380 Identities=12% Similarity=-0.027 Sum_probs=230.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 037510 339 LINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGD 418 (806)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 418 (806)
....+...|++.+|........... .-..............|+++.+..++..+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 3444556677766665544332110 00011111223344567777777776655221111223333344455567889
Q ss_pred HHHHHHHHHHHHHcCC------CCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcH----HHHHHHHHHHHhc
Q 037510 419 VDEALHLWLMMLKRCV------CPN--EVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNT----ITFNTMIKGLCKM 486 (806)
Q Consensus 419 ~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 486 (806)
++++...+......-. .+. ......+...+...|+++.|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999888887754311 111 112233445566899999999999988763111121 2345566677889
Q ss_pred CCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCC--C-CHHHHHHH
Q 037510 487 GKMTEAQKIFDKMKELGC---LPN--IITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIV--P-SIDMYNYL 558 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l 558 (806)
|++++|...+.+.....- .+. ..++..+...+...|++++|...++...... ...+.. + ....+..+
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI-----EEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhccccccHHHHHHHHH
Confidence 999999999988764311 111 2345566778889999999999988763211 111111 1 23345556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCC--CCCC--HhHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHH--HH--HHH
Q 037510 559 ISVAFKSRELTSLVDLLAEMQTMG--LYPN--IVTYGALISGWCDAGMLNKAFKAYFDMIEKG--FSPNVA--IC--SKL 628 (806)
Q Consensus 559 ~~~~~~~~~~~~a~~~~~~~~~~g--~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l 628 (806)
...+...|++++|...+++..... ..+. ...+..+...+...|+.++|.+.+.++.... ...... .. ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 677788899999999998876531 1122 3344445666778999999999998886521 111111 10 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|+.+.|..++........... ......+..+..++...|+.++|.
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANN----------------------------HFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccc----------------------------hhHHHHHHHHHHHHHHcCCHHHHH
Confidence 2344568899999998877543211100 001112456777889999999999
Q ss_pred HHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 709 RIFSALLLT----GFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 709 ~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
..+++.... |..++. .++..++.++.+.|+.++|...+.++++..
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999998763 333333 367788899999999999999999999843
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=1.6e-05 Score=93.87 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=48.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-cHHHHHHHHHHHHh
Q 037510 414 CRVGDVDEALHLWLMMLKRCVCPN---EVGYCTLLDILFNKGDFYGAVKLWNNILAR----GFYK-NTITFNTMIKGLCK 485 (806)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~ 485 (806)
...|+.+.|...+........... ...+..+..++...|++++|...+++.... |... ...+...+..++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 335556666555544332111111 011234555666667777776666665542 1111 12344555666777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 037510 486 MGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 486 ~g~~~~a~~~~~~~~~~~ 503 (806)
.|+.++|...+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 788888888877777654
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.8e-07 Score=91.20 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=141.0
Q ss_pred HHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 037510 130 KIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSME 209 (806)
Q Consensus 130 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 209 (806)
+-+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 333322234445566777888888766544 333222 3555555555544443334445
Q ss_pred HHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 210 KALDFVKEMENLGFEL-NVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 210 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
.+..-+++.......+ +..........+...|++++|.++++.. .+.......+.+|.+.+|++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443333222 2223333334556678888887777542 35566667777888888888888888887
Q ss_pred HhcCCCCCChHhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 037510 289 KEEDDVIVDEYAYGVLIDGYCK----VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNL 364 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 364 (806)
.+.+ +..+...+..++.. ...+.+|.-+|+++... +.+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 158 ~~~~----eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQID----EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HCCS----CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HhcC----CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 6542 23344445554433 23577777777776554 45567777777777777777777777777766554
Q ss_pred CCChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 037510 365 RPDSFSFNTLVDGYCRECDM-TEAFRLCAEMLRQ 397 (806)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 397 (806)
+-+..+...++......|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33445555555555556665 4455566665543
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=0.00058 Score=73.13 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=135.1
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCL-LSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKAL 212 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 212 (806)
..+++..|....+++.+.. ||......+ .-.+.+.|+.++|..+++.....+.. |..|...+-.+|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4578888888888887753 443322222 22356889999999888877655433 7788888888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHH
Q 037510 213 DFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK----------MEEAE 282 (806)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~ 282 (806)
.++++.... .|+......+..+|.+.+++.+-.+.--++-+. ++.+...+=++++.+.+.-. ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999998875 466777778888888888877655444444332 22234443344444433211 22455
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLN-EMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
+.++.+.+.+|-..+..-.......+-..|++++|..++. ...+.-...+...-+.-++.+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5556665554311122222222334445666777777763 333332333444445556666666777766666666665
Q ss_pred CC
Q 037510 362 WN 363 (806)
Q Consensus 362 ~~ 363 (806)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=5.6e-07 Score=78.18 Aligned_cols=103 Identities=16% Similarity=0.069 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSG 767 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 767 (806)
.+..++..+...|++++|...|+..+. ..|+. .+|..++.++...|++++|+..|+++++ +.| ++..+..++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~ 101 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 455678899999999999999999999 77866 5899999999999999999999999998 456 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
+.+.|+.++|...+++..+ +.|+...|..
T Consensus 102 l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~ 130 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIK--MSYADASWSE 130 (144)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHH
Confidence 9999999999999999988 7787655543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=1.7e-06 Score=79.61 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=68.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHh
Q 037510 600 AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDES 679 (806)
Q Consensus 600 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 679 (806)
.++.++++..+++.++.+ +.|...|..+...|...|++++|...+++..+.++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------------------------- 105 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------------------------- 105 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------
Confidence 445556666666655542 345566666666666666666666666666655422
Q ss_pred hhcCCCCChHHHHHHHHHH-HhcCC--hhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 680 ARSLCVPNYVVYNIVIAGI-CKSGN--VTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 680 ~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+..++..+..++ ...|+ .++|.+++++.++ ..|+. .++..++..+.+.|++++|+..|+++++
T Consensus 106 -------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 106 -------NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555543 44454 3666666666666 45544 3566666666666666666666666665
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=2.7e-06 Score=82.13 Aligned_cols=170 Identities=14% Similarity=0.052 Sum_probs=119.9
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhh
Q 037510 586 NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN---VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 586 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 662 (806)
....+..++..+...|++++|...++++++.. +.+ ...+..+..++...|++++|...++++++..+...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP------ 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC------
Confidence 34455666667777888888888888777642 112 23556677778888888888888888876643210
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc--------CChhhHHHHHHHHHHCCCCCCHH-hH-------
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS--------GNVTDARRIFSALLLTGFSPDNF-TY------- 726 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p~~~-~~------- 726 (806)
.-..++..++.++... |++++|.+.|+++.+ ..|+.. .+
T Consensus 105 -----------------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 105 -----------------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD 159 (235)
T ss_pred -----------------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH
Confidence 0112344455555543 778899999999988 567653 21
Q ss_pred ----------HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 727 ----------STLIHGYAAVGDINEAFNLRDEMLKINL-VP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 727 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..++..|.+.|++++|+..++++++..- .| ....+..++.++.+.|++++|.++++.+...
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 160 YLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456778899999999999999998421 12 3467889999999999999999999998763
No 112
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=1.1e-05 Score=79.97 Aligned_cols=209 Identities=15% Similarity=0.127 Sum_probs=147.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEMQTMGLYPN-IVTYGALISGWCDAG-MLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
..+-..+...++.++|+.+..++.+. .|+ ..+|+.-..++...| .+++++..++++++.+ +.+..+|......+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 33444556677888999999988876 343 445666666666667 5789999999988764 335566776666666
Q ss_pred hcCCH--HHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 634 RLGKI--DEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 634 ~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+.|+. +++..+++++++.+.. |..+|+....++...|++++|++.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk--------------------------------Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK--------------------------------NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77763 6788888888877643 7778998888999999999999999
Q ss_pred HHHHHCCCCCCH-HhHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc----CCHHHHH
Q 037510 712 SALLLTGFSPDN-FTYSTLIHGYAAV---GD----INEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS----GELDRAK 778 (806)
Q Consensus 712 ~~~~~~g~~p~~-~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~ 778 (806)
+++++ ..|+. .+|+....++.+. |. .++++++..+++. +.| |...|+.+...|... ++..+|.
T Consensus 166 ~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 166 HQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 99998 55654 4787777776554 22 2467788878877 456 677888888777773 4456788
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 779 RLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 779 ~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
+.+.+..+.+ ..+......|++.|+
T Consensus 242 ~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 242 SVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 8888876632 223445555666554
No 113
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=2.8e-05 Score=77.03 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=163.3
Q ss_pred HHhcCChHHHHHHHHHHHhcccChhhhhcCCCC-CHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 037510 518 YCKVGNLEEAFKIKNLMERREILPSMEKEAIVP-SIDMYNYLISVAFKSR-ELTSLVDLLAEMQTMGLYPNIVTYGALIS 595 (806)
Q Consensus 518 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~l~~ 595 (806)
+...+..++|+.+.+.+. . ..| +..+|+.-..++...| ++++++..++++.+.. +-+..+|+....
T Consensus 47 l~~~e~serAL~lt~~aI---------~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 47 YASDERSPRALDLTADVI---------R--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHcCCCCHHHHHHHHHHH---------H--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 334566777777777652 1 223 3445666666666677 5799999999998863 334556776666
Q ss_pred HHHccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 596 GWCDAGML--NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 596 ~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
.+.+.|.. ++++.+++++++.. +-+..+|.....++...|+++++++.++++++.++.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~------------------- 174 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR------------------- 174 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-------------------
Confidence 66666653 67899999999864 447889999999999999999999999999998754
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhc---CCh----hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhc----CCHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKS---GNV----TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAV----GDINE 741 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~----g~~~~ 741 (806)
|..+|+.....+.+. |.. +++++...++++ ..|+.. +|+.+...+... +...+
T Consensus 175 -------------N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 175 -------------NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred -------------chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 566787777666554 222 467888888888 778774 899998888873 44567
Q ss_pred HHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC------------------CHHHHHHHHHHHHHCCCCCCHh
Q 037510 742 AFNLRDEMLKINLVP-NIATYNSLVSGLCNSG------------------ELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 742 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|.+.+.+..+. .| ++.....|++.|+... ..++|.++++.+.+ ..|=..
T Consensus 240 ~~~~~~~~~~~--~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~--~d~ir~ 307 (320)
T PLN02789 240 VSSVCLEVLSK--DSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV--ADPMRR 307 (320)
T ss_pred HHHHHHHhhcc--cCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh--hCcHHH
Confidence 98999887773 34 6677888899988643 34678888888843 555433
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00088 Score=67.52 Aligned_cols=166 Identities=10% Similarity=0.147 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037510 553 DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYP-NIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVST 631 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 631 (806)
.+|-.+++...+...++.|..+|.++.+.+..+ ++..+++++.-+| .++...|.++|+--+++ +..++.-....++-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 456667777788888999999999999987777 6677777877665 57889999999987765 33345555667788
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...++-..+..+|++.+..++.|+ ....+|..++.--..-|++..++++-
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~-----------------------------ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSAD-----------------------------KSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChh-----------------------------hhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8899999999999999998865543 23458999999889999999999888
Q ss_pred HHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 712 SALLLT---GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 712 ~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
+++... ...|....-..+++-|.-.+.+..-..-++.+
T Consensus 496 kR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 496 KRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 877653 01222223344566666666655444444443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.62 E-value=5.9e-06 Score=90.37 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
..+...+..|.....+.|.+++|..+++.+.+..+. +......++.++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--------------------------------~~~a~~~~a~~L 130 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--------------------------------SSEAFILMLRGV 130 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--------------------------------cHHHHHHHHHHH
Confidence 445666666666666677777777777766665322 444555666666
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
.+.+++++|+..+++... ..|+.. .+..++.++.+.|++++|+.+|+++... .| +..++..+..++...|+.++
T Consensus 131 ~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHH
Confidence 677777777777777666 556654 5566666666677777777777776662 23 35566666666667777777
Q ss_pred HHHHHHHHHH
Q 037510 777 AKRLFCKLRQ 786 (806)
Q Consensus 777 A~~~~~~m~~ 786 (806)
|...|++..+
T Consensus 207 A~~~~~~a~~ 216 (694)
T PRK15179 207 ARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=4.7e-08 Score=59.59 Aligned_cols=32 Identities=38% Similarity=0.816 Sum_probs=17.9
Q ss_pred CCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 753 NLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 753 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.60 E-value=0.0017 Score=69.63 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=142.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHH
Q 037510 167 LVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA--YCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLN 244 (806)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 244 (806)
....+++..|+....++.+. .|+.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...|..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999988888875 35543 3445555 45889999999999888776644 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcC-C---------h
Q 037510 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVG-K---------V 314 (806)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~ 314 (806)
+|..+|++..... |+......+..+|.+.+++.+-.+.--++-+. .+-+.+.+=.+++.....- . +
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999998865 56777777888888888776543333333332 3334444444454444321 1 2
Q ss_pred HHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCHhHHHHHHH-HHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 315 DEAIRVLNEMLKTG-LEMNLLICNSLINGYCKLGQVCEAKRVLR-CMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 315 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
.-|....+.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-..-+...-+--+..+...+++.+..++..
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555555543 11111111122233445677888888873 33333222333334455666667777888887777
Q ss_pred HHHHCCC
Q 037510 393 EMLRQGI 399 (806)
Q Consensus 393 ~m~~~g~ 399 (806)
++...|.
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 7777653
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=8.5e-06 Score=74.99 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=121.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
+..|...|+++......+.+.. |. ..+...++.+++...+++.++.++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P-------------------- 70 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANP-------------------- 70 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCC--------------------
Confidence 3457778887776444332221 11 012236777888888888887753
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHH-HhcCC--HHHHHHHHHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGY-AAVGD--INEAFNLRDEM 749 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~-~~~g~--~~~A~~~~~~~ 749 (806)
.|...|..++..|...|++++|...|++..+ +.|+.. .+..++.++ ...|+ .++|.++++++
T Consensus 71 ------------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 71 ------------QNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred ------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3888999999999999999999999999999 778764 788888874 67777 59999999999
Q ss_pred HHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 750 LKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 750 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
++ ..| +...+..++..+.+.|++++|...++++.+ ..|....-..+|++
T Consensus 137 l~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~~~~~r~~~i~~ 186 (198)
T PRK10370 137 LA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD--LNSPRVNRTQLVES 186 (198)
T ss_pred HH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCccHHHHHHH
Confidence 99 456 778889999999999999999999999987 44444444455554
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=2e-05 Score=87.54 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhH
Q 037510 491 EAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTS 570 (806)
Q Consensus 491 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 570 (806)
.|.++-+..... |.....|-..+.-....++.++|+++.++.....-.. .-.--..+|.++++.....|.-+.
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-----EeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR-----EEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-----hhHHHHHHHHHHHhHHHhhCcHHH
Confidence 344443333332 4456788888888889999999999998873221000 001123467778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 571 LVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 571 a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
..++|+++.+. --....|..|...|.+.+.+++|.++++.|.++ +......|...+..+.++.+-++|..+++++++
T Consensus 1516 l~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1516 LKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999998874 112345788899999999999999999999986 456788899999999999999999999999887
Q ss_pred CCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHH
Q 037510 651 FDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTL 729 (806)
Q Consensus 651 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l 729 (806)
.-+.. .+.....-.+..-.+.|+.+++..+|+..+. -.|.. ..|+.+
T Consensus 1593 ~lPk~------------------------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1593 SLPKQ------------------------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVY 1640 (1710)
T ss_pred hcchh------------------------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHH
Confidence 53321 1344555566677899999999999999988 45654 589999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc-CC
Q 037510 730 IHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS-GE 773 (806)
Q Consensus 730 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-g~ 773 (806)
++.=.+.|+.+-+..+|++++..++.| ....+....-.|.+. |+
T Consensus 1641 id~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1641 IDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999988877 444444444445544 55
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=8.9e-06 Score=74.10 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=133.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
..+-..+...|+-+.+..+..+.... .+.|.......+....+.|++.+|...++++....
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------------ 130 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------------ 130 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------------
Confidence 55666777888888888777775543 24466666778888999999999999999998754
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
++|..+|+.++-+|.+.|+.++|..-|.+.++ +.|+. ..++.|+..|.-.|+.+.|..++...
T Consensus 131 --------------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 131 --------------PTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred --------------CCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 35899999999999999999999999999999 77876 48899999999999999999999999
Q ss_pred HHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 750 LKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 750 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
...+ .-|..+-..|.......|++++|.++...-.
T Consensus 195 ~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 195 YLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9843 2377788889999999999999999876543
No 121
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=3e-06 Score=73.61 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..+...+...|++++|...|+.++..++ .+..+|..++.++...|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------------------~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--------------------------------WSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------------------CcHHHHHHHHHHHHHHhhH
Confidence 44455666677777777777777665542 2556677777777777777
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
++|+..|+++.+ ..|+. .++..++.++...|++++|+..|+++++ +.|+
T Consensus 75 ~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~ 124 (144)
T PRK15359 75 TTAINFYGHALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYA 124 (144)
T ss_pred HHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC
Confidence 777777777776 55654 3667777777777777777777777776 4453
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=8.7e-08 Score=58.41 Aligned_cols=29 Identities=45% Similarity=0.725 Sum_probs=11.4
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEW 252 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 252 (806)
.||..+||+||++||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=1.9e-05 Score=81.98 Aligned_cols=215 Identities=16% Similarity=0.098 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 037510 160 CNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVS 239 (806)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 239 (806)
--.+...+...|-...|..+|+++. .|..++.+|+..|+..+|..+..+-.+. +|+...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 3455667777888888888887654 3556777888888888888887777763 6777777777777666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 037510 240 LGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIR 319 (806)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (806)
.--+++|.++++....+ +-..+.......++++++.+.|+.-.+... .-..+|..+..+..+.+++..|.+
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhHHHhccHHHHHHhhhHHHHH
Confidence 66677777777655432 333333334456788888888877766532 344567777777778888888888
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 320 VLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.|...+...+. +...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.++..
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88877765322 56678888888888888888888888877766 44555666666667777888888888777754
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=1e-05 Score=78.01 Aligned_cols=185 Identities=14% Similarity=-0.001 Sum_probs=132.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-H---hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--H
Q 037510 549 VPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN-I---VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--V 622 (806)
Q Consensus 549 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 622 (806)
......+-.++..+...|++++|...++++... .|+ . ..+..+..++...|++++|+..++++++...... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 345667777888999999999999999999875 333 2 4667788889999999999999999998632111 1
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHH
Q 037510 623 AICSKLVSTLCRL--------GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIV 694 (806)
Q Consensus 623 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 694 (806)
..+..+..++... |++++|.+.++++++..+....... ...........+ ......+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----a~~~~~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----AKKRMDYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----HHHHHHHHHHHH-----------HHHHHHH
Confidence 2455666666654 7899999999999987544211100 000000000000 0112356
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
...|.+.|++++|+..+++.++. .|+ ...+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVEN--YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH--CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999984 343 248899999999999999999999988763
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.53 E-value=6.4e-05 Score=83.66 Aligned_cols=237 Identities=11% Similarity=0.066 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 037510 456 GAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKEL-GCLPN---IITYRTLSDGYCKVGNLEEAFKIK 531 (806)
Q Consensus 456 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 531 (806)
.|.++-+.++.. +.+...|-..+....+.++.++|.++.+++... +++-. ...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 444444444443 456677888888899999999999999998763 11111 245777777777778888888888
Q ss_pred HHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHH
Q 037510 532 NLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYF 611 (806)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 611 (806)
+++ .+ +.....+|..|...|.+.+..++|.++++.|.++ ..-....|..++..+.+..+-+.|..++.
T Consensus 1521 eRA---------cq--ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1521 ERA---------CQ--YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred HHH---------HH--hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 876 22 3344567888999999999999999999999986 23467789999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHH
Q 037510 612 DMIEKGFSP-NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVV 690 (806)
Q Consensus 612 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (806)
++++.-.+. ........+..-.+.|+.+.+..+|+......++ ....
T Consensus 1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--------------------------------RtDl 1636 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--------------------------------RTDL 1636 (1710)
T ss_pred HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--------------------------------chhH
Confidence 999862221 3445556667777999999999999999877644 4569
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD 738 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~ 738 (806)
|+..++.-.++|+.+.+..+|+++++.++.|... .|.-.+.-=-..|+
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999988888764 45444443333455
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=7.3e-05 Score=68.12 Aligned_cols=247 Identities=16% Similarity=0.137 Sum_probs=157.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVA 562 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 562 (806)
+.-.|.+..++.......... .+...-.-+.++|...|.+.....- .+.+..|.......+....
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e-------------I~~~~~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE-------------IKEGKATPLQAVRLLAEYL 82 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc-------------cccccCChHHHHHHHHHHh
Confidence 334466666665555443331 2333444455677777765443221 1222244444444444444
Q ss_pred HhcCCHhHHHH-HHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037510 563 FKSRELTSLVD-LLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 563 ~~~~~~~~a~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
..-++.+.-.. +.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333 33444443323332333333445889999999998876621 233333334566788899999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH----hcCChhhHHHHHHHHHHC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC----KSGNVTDARRIFSALLLT 717 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~ 717 (806)
.+.+++|.+.+ +..+.+-|..++. ..+...+|.-+|++|.++
T Consensus 157 ~~~lk~mq~id----------------------------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k 202 (299)
T KOG3081|consen 157 EKELKKMQQID----------------------------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK 202 (299)
T ss_pred HHHHHHHHccc----------------------------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc
Confidence 99999998764 4456666666664 345689999999999885
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037510 718 GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRA-KRLFCKLRQ 786 (806)
Q Consensus 718 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 786 (806)
..|+..+.+..+.++...|++++|..++++++.+. ..++.+...++.+-...|+-.++ .+.+..+..
T Consensus 203 -~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 203 -TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 67888999999999999999999999999999853 34788888888877777776444 456666665
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00014 Score=65.89 Aligned_cols=189 Identities=22% Similarity=0.266 Sum_probs=128.0
Q ss_pred cCCHhHHHHHHHHHHH---CC-CCCCHh-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 565 SRELTSLVDLLAEMQT---MG-LYPNIV-TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~---~g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++++... ++-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4456777777776654 23 344433 3444455556778888888888888775 3222222222233355678888
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
+|.++++.+++.++. |.+++---+...-.+|+.-+|++.+.+.++. +
T Consensus 104 ~A~e~y~~lL~ddpt--------------------------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F 150 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT--------------------------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-F 150 (289)
T ss_pred hHHHHHHHHhccCcc--------------------------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-h
Confidence 999999888877633 5566666666677778777888888887774 5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG---ELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p 791 (806)
.-|..+|.-|...|...|++++|.-.+++++- +.| ++..+..+...+.-.| +++-|.++|.+..+ +.|
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 55667888888888888888888888888887 566 5666666666655444 35678888888777 444
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=5.1e-05 Score=83.83 Aligned_cols=43 Identities=19% Similarity=0.185 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 769 (806)
++--+-..|...++|++++.+++.+++. .| |.....-++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 3444445566677888888888888883 44 5566677777766
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.44 E-value=0.0028 Score=64.03 Aligned_cols=424 Identities=12% Similarity=0.106 Sum_probs=239.8
Q ss_pred CCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHH
Q 037510 64 FRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALH 143 (806)
Q Consensus 64 ~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (806)
.+-|..+|+.|++-+... ..++++...++++. .++.++.++..-++.-.+.++++...+
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--------------------~FP~s~r~W~~yi~~El~skdfe~VEk 74 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--------------------VFPSSPRAWKLYIERELASKDFESVEK 74 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--------------------cCCCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 355788999999988665 89999998888864 467788888888999999999999999
Q ss_pred HHHHhhhcCCCcChhhHHHHHHHHHHc-CChHH----HHHHHHHH-HHCCCCCCH-hHHHHHHHH---------HHhcCC
Q 037510 144 VFDNMGKYGCIPSLRSCNCLLSNLVKN-GEGYV----ALLVYEQM-MRVGIVPDV-FTCSIVVNA---------YCKEKS 207 (806)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~----A~~~~~~m-~~~~~~~~~-~~~~~l~~~---------~~~~g~ 207 (806)
+|.+....- .++..|..-++--.+. |.... -.+.|+-. .+.|+.+-+ ..|+..+.- +....+
T Consensus 75 LF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QR 152 (656)
T KOG1914|consen 75 LFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQR 152 (656)
T ss_pred HHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHH
Confidence 999887642 4677787777654432 22222 22344433 334544332 234443332 334456
Q ss_pred hhHHHHHHHHHHHcCCCcCHHHHH------HHHHHH-------HhCCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHH
Q 037510 208 MEKALDFVKEMENLGFELNVVTYN------SLIDGY-------VSLGDLNGAKRVLEWTCE--KGISRTAVTYTTLTKGY 272 (806)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~------~li~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~ 272 (806)
.+..++++.++...-+..=...|+ .=|... -+..++-.|+++++++.. +|...+..+ .
T Consensus 153 I~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------v 225 (656)
T KOG1914|consen 153 ITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------V 225 (656)
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------C
Confidence 677788888887643221111111 111111 123345566666666543 233222222 0
Q ss_pred HhcCCHHHHH--HHHHHH---HhcCCCC-CChH--------hHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhHHH
Q 037510 273 CKQHKMEEAE--NMLRRM---KEEDDVI-VDEY--------AYGVLIDGYCKV-GKVDEAIRVLNEMLKTGLEMNLLICN 337 (806)
Q Consensus 273 ~~~g~~~~a~--~~~~~~---~~~~~~~-~~~~--------~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (806)
-..|-.++.. +++... .+.++.. .+.. +|...+..+.-. .-+-++-..+.+.
T Consensus 226 p~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~------------- 292 (656)
T KOG1914|consen 226 PPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI------------- 292 (656)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------
Confidence 0111111111 111111 1111111 1110 111111110000 0000111111110
Q ss_pred HHHHHHHhcCC-------HhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCcchHH
Q 037510 338 SLINGYCKLGQ-------VCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRE---CDMTEAFRLCAEMLRQGIEPSVVTYN 407 (806)
Q Consensus 338 ~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~ 407 (806)
-+.+...|+ -+++..+++...+.-..-+..+|..+...--.. .+.+.....+++++..-..--..+|.
T Consensus 293 --s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~ 370 (656)
T KOG1914|consen 293 --SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYC 370 (656)
T ss_pred --hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehh
Confidence 011222222 355666666554432233444454444322111 23566677777776542222335677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhc
Q 037510 408 TLLKGLCRVGDVDEALHLWLMMLKRCVCP-NEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKM 486 (806)
Q Consensus 408 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 486 (806)
..++.-.+..-+..|..+|.+..+.+..+ ++...+.++..|| .++..-|.++|+--+++ +..++.--...+..+...
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHh
Confidence 78888888888899999999998877666 6667777776655 56788888888877665 233444556778888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 487 GKMTEAQKIFDKMKELGCLPN--IITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
++-..+..+|++....++++| ...|..+++--..-|+...+.++-+++
T Consensus 449 Ndd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 449 NDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred CcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 998999999999988766655 378899998888899998888876655
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=6.7e-06 Score=71.32 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+......++..+...|++++|.+.|+++.+ ..|+. ..|..++..+...|++++|...++++++.+ ..+...+..+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 445677788899999999999999999998 55754 588899999999999999999999998853 33677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.++...|++++|..++++..+ ..|+...+..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHH
Confidence 999999999999999999998 6788777655543
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=5.8e-05 Score=68.96 Aligned_cols=159 Identities=12% Similarity=0.042 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 196 SIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 196 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
...-..+...|+-+....+....... .+.|......++....+.|++..|...|.+.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 44455555666666666665554332 133455555667777777777777777777766543 5677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHH
Q 037510 276 HKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRV 355 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (806)
|++++|..-|.+..+. .+-+...++.+...+.-.|+.+.|..++......+.. |..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777777665 3334556677777777777777777777777665432 555666666666777777777776
Q ss_pred HHHH
Q 037510 356 LRCM 359 (806)
Q Consensus 356 ~~~~ 359 (806)
-..-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 6543
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00022 Score=65.12 Aligned_cols=253 Identities=15% Similarity=0.156 Sum_probs=155.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 037510 413 LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEA 492 (806)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 492 (806)
+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.... .+.......+...+..-++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 33344554444433333222 12334444455555555555433322 22211 23344444444444444544443
Q ss_pred HH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHH
Q 037510 493 QK-IFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSL 571 (806)
Q Consensus 493 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 571 (806)
.. +.+.+.......+......-...|+..|++++|++..... .+.+....=+..+.+..+.+-|
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~---------------~~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG---------------ENLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc---------------chHHHHHHHHHHHHHHHHHHHH
Confidence 33 3344444333334344444456688899999998876532 2334444445667788889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 572 VDLLAEMQTMGLYPNIVTYGALISGWC----DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQK 647 (806)
Q Consensus 572 ~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 647 (806)
.+.+++|.+- .+..|.+-|..++. ..+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++
T Consensus 157 ~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 9999999874 25556666666654 345788999999999875 588999999999999999999999999999
Q ss_pred HhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhH-HHHHHHHHHCCCCCCHH
Q 037510 648 MVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDA-RRIFSALLLTGFSPDNF 724 (806)
Q Consensus 648 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~g~~p~~~ 724 (806)
++.++.. ++.+...++.+-...|...++ .+.+.++.. ..|+..
T Consensus 233 aL~kd~~--------------------------------dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 233 ALDKDAK--------------------------------DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred HHhccCC--------------------------------CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence 9987643 566777777666667765544 455566665 556543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00014 Score=72.60 Aligned_cols=156 Identities=22% Similarity=0.205 Sum_probs=118.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHh
Q 037510 595 SGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAM 674 (806)
Q Consensus 595 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 674 (806)
-.+...|++++|...++.++.. .+.|+..+....+.+.+.++.++|.+.++++....+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-------------------- 372 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-------------------- 372 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------------
Confidence 3455788999999999998876 3446666677788888999999999999999877532
Q ss_pred hhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 675 SLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
.....-.+..+|.+.|++.+|+.+++.... -.|+. ..|..|..+|...|+..+|.....++
T Consensus 373 ------------~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~---- 434 (484)
T COG4783 373 ------------SPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG---- 434 (484)
T ss_pred ------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH----
Confidence 355677788899999999999999998887 45654 58999999999999988887665554
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHhh
Q 037510 754 LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQK--GLTPTVVTYNILIDGY 803 (806)
Q Consensus 754 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~ 803 (806)
|...|++++|+..+....++ .-.|+..-+...|+..
T Consensus 435 --------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 435 --------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred --------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 44678888888888887764 3445555556666554
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=0.00015 Score=79.68 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=113.4
Q ss_pred hhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH
Q 037510 115 YKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT 194 (806)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 194 (806)
.++...+++++..|.+...+.|.+++|..+++...+..+ .+..+...++..+.+.+++++|+..+++.+...+ -+...
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~ 156 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSARE 156 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHH
Confidence 356667788888888888888889999988888888653 2566778888888888888888888888887542 24556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037510 195 CSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 195 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
...+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+..- +....|+.+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 6677778888888888888888888743 33577888888888888888888888888876421 344454443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00036 Score=63.22 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=142.0
Q ss_pred CChHHHHHHHHHHHhcccChhhhhcC-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHH
Q 037510 522 GNLEEAFKIKNLMERREILPSMEKEA-IVPSI-DMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNI-VTYGALISGWC 598 (806)
Q Consensus 522 g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~ 598 (806)
.+.++..+++..+... ...+ ..++. ..|..++-+....|+.+.|...++++...- |.. ..-..-..-+.
T Consensus 26 rnseevv~l~~~~~~~------~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lE 97 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNY------SKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLE 97 (289)
T ss_pred cCHHHHHHHHHHHHHH------hhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHH
Confidence 4556666666655322 1222 44554 345556677788999999999999988762 433 22222233356
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHH
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDE 678 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (806)
..|++++|+++|+..++.+ +.|..++..-+...-.+|+.-+|++-+.+..+.-+
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------------------------- 151 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------------------------- 151 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-------------------------
Confidence 7899999999999999875 55777887777778888998899998888877642
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 037510 679 SARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG---DINEAFNLRDEMLKINL 754 (806)
Q Consensus 679 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 754 (806)
.|...|.-+...|...|++++|.-.++++.- +.|... .+..+...+...| +.+-|.++|.+.++ +
T Consensus 152 -------~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l 220 (289)
T KOG3060|consen 152 -------NDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--L 220 (289)
T ss_pred -------CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--h
Confidence 3888999999999999999999999999998 788776 5566777766655 67779999999998 4
Q ss_pred CC
Q 037510 755 VP 756 (806)
Q Consensus 755 ~p 756 (806)
.|
T Consensus 221 ~~ 222 (289)
T KOG3060|consen 221 NP 222 (289)
T ss_pred Ch
Confidence 45
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.0004 Score=77.02 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHh
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNM 148 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (806)
..+..|+..+.+.+++++|..++.+.++..|+..........+... ....+......++.......++.-...+...+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q--~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS--RRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh--hcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 4555555655566666666666555554433322221111111110 01111111113333333333443333333333
Q ss_pred hhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037510 149 GKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMEN 220 (806)
Q Consensus 149 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 220 (806)
...+ .+..++..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... ++++|.+++.+...
T Consensus 110 ~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 110 LLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred Hhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 3321 233345555555555555555555555555544 22445555555555555 55555555555443
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=2.2e-05 Score=68.01 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
......++..+...|++++|...++.+...++ .+...+..++..+.+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------------------~~~~~~~~la~~~~~~ 64 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------------------YNSRYWLGLAACCQML 64 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------------------CcHHHHHHHHHHHHHH
Confidence 44455666667777777777777777766542 2556777777777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
|++++|...+++.++ ..|+. .++..++..|...|++++|+..|++.++ +.|+...
T Consensus 65 ~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 65 KEYEEAIDAYALAAA--LDPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 888888887777777 44544 4666777777778888888888877777 3454433
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=6.4e-05 Score=63.87 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
..-.+..-+...|++++|..+|+-+.. +.|... -|..|+.+|-..|++++|+..|..+.... ..|+..+-.+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344456667788888888888888888 777764 67778888888888888888888888743 23777888888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|+.+.|++-|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887765
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00052 Score=68.59 Aligned_cols=140 Identities=21% Similarity=0.160 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCc-HHHHHHHHHHHHhcCCH
Q 037510 411 KGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKN-TITFNTMIKGLCKMGKM 489 (806)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 489 (806)
..+...|..+.|+..++.++.. .+.|........+.+.+.++..+|.+.++++.... |+ ...+-.+..+|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 3445667788888888887765 33456666677788888888888888888888763 43 56667778888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHh
Q 037510 490 TEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELT 569 (806)
Q Consensus 490 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 569 (806)
.+|+.+++...... +.|+..|..|..+|...|+..++.....+ .+.-.|+++
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------------------~~~~~G~~~ 442 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE---------------------------GYALAGRLE 442 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH---------------------------HHHhCCCHH
Confidence 88888888887765 66788888899999998888887765543 366678888
Q ss_pred HHHHHHHHHHHC
Q 037510 570 SLVDLLAEMQTM 581 (806)
Q Consensus 570 ~a~~~~~~~~~~ 581 (806)
.|...+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 888888777765
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=2.1e-05 Score=73.27 Aligned_cols=102 Identities=18% Similarity=0.281 Sum_probs=91.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcC
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSG 772 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 772 (806)
+.-+.+.+++++|+..|.++++ +.|+. +-|..-..+|.+.|.++.|++-.+.++. +.|. ..+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 5567889999999999999999 88876 5678889999999999999999999998 6674 468999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
++++|.+.|++.++ +.|+..+|+.=+..
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999999 99999999876654
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00012 Score=74.03 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=96.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
.+++..+...++++.|+++++++.+.. |+. ...++..+...++-.+|.+++++.++..+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p----------------- 231 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENP----------------- 231 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-----------------
Confidence 445555667788999999999988763 553 34577777778888899999988886532
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
.+...+..-...|.+.++++.|+.+.+++.+ ..|+.. +|..|+.+|.+.|++++|+-.++.+
T Consensus 232 ---------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 232 ---------------QDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred ---------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 2556677777788899999999999999999 789886 9999999999999999999887765
Q ss_pred H
Q 037510 750 L 750 (806)
Q Consensus 750 ~ 750 (806)
-
T Consensus 295 P 295 (395)
T PF09295_consen 295 P 295 (395)
T ss_pred c
Confidence 3
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00016 Score=63.20 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
|...+...|++++|+..++.... -......+..++++|.+.|++++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555555555555555544222 111223444555555555555555555554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00012 Score=63.96 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
|..++..+ ..++...+...++.+.+...... ......-.+...+...|++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~-----------------------------ya~~A~l~lA~~~~~~g~~ 64 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSP-----------------------------YAALAALQLAKAAYEQGDY 64 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCh-----------------------------HHHHHHHHHHHHHHHCCCH
Confidence 33344444 47788888888888887643210 0123444567888999999
Q ss_pred hhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
++|...|+.+.+....|+. .+...|...+...|++++|+..++..... ...+..+...+++|.+.|++++|...|+
T Consensus 65 ~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 65 DEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999996522322 25667889999999999999999774432 2245567788899999999999999998
Q ss_pred HH
Q 037510 783 KL 784 (806)
Q Consensus 783 ~m 784 (806)
+.
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 64
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.05 E-value=0.00015 Score=73.29 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
......++..+...++++.|..+++++.+.++ + ....++..+...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---------------------------------e--v~~~LA~v~l~~ 213 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDP---------------------------------E--VAVLLARVYLLM 213 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---------------------------------c--HHHHHHHHHHhc
Confidence 34445666777778999999999999988752 2 445578888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
++-.+|++++.+.++ ..|.. ..+..-+..|.+.++++.|+++.+++++ +.| +..+|..|..+|.+.|++++|+-
T Consensus 214 ~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 214 NEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred CcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999998 55644 5777778889999999999999999999 678 56699999999999999999999
Q ss_pred HHHHHHH
Q 037510 780 LFCKLRQ 786 (806)
Q Consensus 780 ~~~~m~~ 786 (806)
.++.++-
T Consensus 290 aLNs~Pm 296 (395)
T PF09295_consen 290 ALNSCPM 296 (395)
T ss_pred HHhcCcC
Confidence 9998874
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00041 Score=67.45 Aligned_cols=285 Identities=16% Similarity=0.095 Sum_probs=149.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 037510 446 DILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLE 525 (806)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 525 (806)
..+.+..++..|+..+...++.. +.+..-|..-...+...|++++|.--.++-.+.. +...........++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666777777777777653 2334445445555666677777766665554432 112233344444455555555
Q ss_pred HHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHhHHHHHH-HHHHccCCh
Q 037510 526 EAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGL-YPNIVTYGALI-SGWCDAGML 603 (806)
Q Consensus 526 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~l~-~~~~~~g~~ 603 (806)
+|.+.++.-. .+ ....++..++....... +|.-.+|..+- .++.-.|+.
T Consensus 135 ~A~~~~~~~~------------------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 135 EAEEKLKSKQ------------------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred HHHHHhhhhh------------------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 5554443110 00 00111111111111111 13333443332 234466777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcC
Q 037510 604 NKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSL 683 (806)
Q Consensus 604 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (806)
++|...--..++.. ..+......-..++.-.++.+.|...|++.+..+ |++......... ..
T Consensus 186 ~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~------~k--------- 247 (486)
T KOG0550|consen 186 DEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM------PK--------- 247 (486)
T ss_pred hhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh------HH---------
Confidence 77776666666542 1122222222334455677777777777777655 332211000000 00
Q ss_pred CCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 684 CVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
-...+..-+.-..+.|++..|.+.|.+.+. +.|+.. .|.....+..+.|+..+|+.-.+++++ +.|..
T Consensus 248 ---~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~sy 320 (486)
T KOG0550|consen 248 ---KLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSY 320 (486)
T ss_pred ---HHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHH
Confidence 011233334556788888888888888887 666553 466666777788888888888888776 33321
Q ss_pred -hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 759 -ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|..-..++...++|++|.+.+++..+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233333455566778888888887665
No 146
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=4.7e-05 Score=70.98 Aligned_cols=98 Identities=27% Similarity=0.308 Sum_probs=87.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
+-+.+.+++.+|+..|.++++.++. |++.|..-..+|++.|.++.|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~--------------------------------nAVyycNRAAAy~~Lg~~~~AVk 136 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT--------------------------------NAVYYCNRAAAYSKLGEYEDAVK 136 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC--------------------------------cchHHHHHHHHHHHhcchHHHHH
Confidence 3466789999999999999987644 88899999999999999999999
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 710 IFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
-.+..+. +.|... +|..|+.+|...|++++|++.|+++++ +.|+-.+|-.
T Consensus 137 Dce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 137 DCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 9999999 889875 999999999999999999999999999 8887666643
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=49.50 Aligned_cols=33 Identities=39% Similarity=0.920 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00011 Score=74.73 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=89.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhc
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNS 771 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 771 (806)
.+..+...|++++|++.|+++++ ..|+. ..|..++.+|...|++++|+..++++++ +.| +...|..++.+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 45677889999999999999999 67876 4888999999999999999999999999 456 677888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 772 GELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
|++++|...|++..+ +.|+.......+..+
T Consensus 84 g~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999998 778877766666544
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00018 Score=60.58 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATY 761 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 761 (806)
++..++..+.+.|++++|.+.|+++.+ ..|+. .++..++.++.+.|++++|++.|+++... .|+ +..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHH
Confidence 566788889999999999999999998 44553 36778999999999999999999999984 233 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 762 NSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
..++.++.+.|+.++|.++++++.+. .|+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 109 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR--YPGS 109 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH--CcCC
Confidence 88889999999999999999999984 4553
No 150
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.92 E-value=0.03 Score=55.76 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHH-------HHHHHHH----hcCCHhHHHHHHHH
Q 037510 509 ITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYN-------YLISVAF----KSRELTSLVDLLAE 577 (806)
Q Consensus 509 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~~~~~~a~~~~~~ 577 (806)
.++..++....+.++...|...+..+.. ..|+...-. .+.+..+ ..-+...=+.++++
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~-----------ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~ 367 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI-----------LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE 367 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh-----------cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4677777778888888888887776521 122221111 1122222 11122333455555
Q ss_pred HHHCCCCCCHh-HHHHHH---HHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHH
Q 037510 578 MQTMGLYPNIV-TYGALI---SGWCDAGM-LNKAFKAYFDMIEKGFSPNVAICSKLV----STLCR---LGKIDEANIFL 645 (806)
Q Consensus 578 ~~~~g~~p~~~-~~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~ 645 (806)
....++ |.. ....|+ .-+-+.|+ -++|+++++..++-. +-|...-+.+. ..|.. ...+.+-..+-
T Consensus 368 ~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe 444 (549)
T PF07079_consen 368 IQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLE 444 (549)
T ss_pred HHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555422 221 111222 22445555 788888888887631 22333222221 22221 11222222222
Q ss_pred HHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHH--HHhcCChhhHHHHHHHHHHCCCCCCH
Q 037510 646 QKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAG--ICKSGNVTDARRIFSALLLTGFSPDN 723 (806)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~ 723 (806)
+-+.+.|+.|-. ..+...-|.|.++ +..+|++.++.-.-.=+.+ +.|+.
T Consensus 445 ~fi~e~gl~~i~---------------------------i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~ 495 (549)
T PF07079_consen 445 DFITEVGLTPIT---------------------------ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSP 495 (549)
T ss_pred HHHHhcCCCccc---------------------------ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcH
Confidence 233334444311 1234455666554 5678899888766555555 88988
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 724 FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
.+|..++-+.....++++|.+++.+ ++|+..+++.
T Consensus 496 ~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 496 QAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 8998888888888899999998887 5676665553
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.92 E-value=0.00012 Score=58.80 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 768 (806)
++..++..+...|++++|...++++.+ ..|+. .++..++..+...|++++|.+.+++..+.+ ..+...+..++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 456678888999999999999999998 55655 578889999999999999999999999843 23456788888999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037510 769 CNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 769 ~~~g~~~~A~~~~~~m~~ 786 (806)
...|++++|..++++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 999999999999999876
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.85 E-value=0.00025 Score=60.32 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
....-.+...+...|++++|.++|+-+...++. +..-|..|+.++...
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--------------------------------~~~y~~gLG~~~Q~~ 82 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--------------------------------SFDYWFRLGECCQAQ 82 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------------------------cHHHHHHHHHHHHHH
Confidence 334445556667788888888888877766532 566777788888888
Q ss_pred CChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|++++|+..|..... +.||.. .+-.++.++...|+.+.|.+.|+.++.
T Consensus 83 g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 83 KHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred hhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888887 667664 677778888888888888888888776
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.3e-05 Score=48.05 Aligned_cols=33 Identities=48% Similarity=0.929 Sum_probs=17.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 370 SFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPS 402 (806)
Q Consensus 370 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 402 (806)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.84 E-value=0.0034 Score=62.02 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
++..++..+.+.|++++|.++|+++..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444555555555555555555544
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.83 E-value=2.8e-05 Score=60.38 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=62.0
Q ss_pred cCChhhHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSP---DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 776 (806)
.|+++.|+.+++++.+ ..| +...+..++.+|.+.|++++|++++++ .+ ..| +......++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 6889999999999999 455 344666799999999999999999999 43 233 33455566899999999999
Q ss_pred HHHHHHH
Q 037510 777 AKRLFCK 783 (806)
Q Consensus 777 A~~~~~~ 783 (806)
|++.+++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999986
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=3.4e-05 Score=47.58 Aligned_cols=33 Identities=33% Similarity=0.688 Sum_probs=19.7
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
.+|+.++.+|.+.|+++.|.+++++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666666555
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.81 E-value=0.00031 Score=63.34 Aligned_cols=98 Identities=13% Similarity=-0.026 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc
Q 037510 622 VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS 701 (806)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 701 (806)
...+..++..+...|++++|...+++++.....| .....++..++.++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------------------~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------------------YDRSYILYNIGLIHTSN 85 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------------------hhhHHHHHHHHHHHHHc
Confidence 3444555556666677777777777766543221 01233566677777777
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHH-------hcCCHHHHHHHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYA-------AVGDINEAFNLRDEML 750 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~-------~~g~~~~A~~~~~~~~ 750 (806)
|++++|+..+++..+ +.|+. .++..++..+. ..|++++|...+++..
T Consensus 86 g~~~eA~~~~~~Al~--~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 86 GEHTKALEYYFQALE--RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred CCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777777777776 45543 24555555555 5666665555554443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00057 Score=57.56 Aligned_cols=98 Identities=14% Similarity=0.047 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
++..++..+.+.|++++|.+.++++....... +.....+..++.++.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~~~ 54 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-----------------------------TYAPNAHYWLGEAYYAQGK 54 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------------------------cccHHHHHHHHHHHHhhcc
Confidence 45566677778888888888888887654221 0123456667888888888
Q ss_pred hhhHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 704 VTDARRIFSALLLTGFSPD----NFTYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+++|...|+++.. ..|+ ..++..++.++.+.|++++|.+.++++++.
T Consensus 55 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 55 YADAAKAFLAVVK--KYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHH--HCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8888888888887 3444 246777888888888888888888888874
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0055 Score=52.88 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=78.5
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhh
Q 037510 584 YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASS 663 (806)
Q Consensus 584 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 663 (806)
.|+...-..|..++...|+..+|...|++...--+-.|......+.++....+++.+|...++++.+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa--------- 156 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA--------- 156 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---------
Confidence 45555555666666666777777666666665444456666666666666666666666666666654311
Q ss_pred hhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 037510 664 AINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 743 (806)
...|| +.-.+...|...|++.+|...|+..+. ..|+...-......+.++|+.++|.
T Consensus 157 -------------------~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 157 -------------------FRSPD--GHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred -------------------cCCCC--chHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 11233 333355666666666666666666666 4555543333444455666555555
Q ss_pred HHHHHHHH
Q 037510 744 NLRDEMLK 751 (806)
Q Consensus 744 ~~~~~~~~ 751 (806)
.-+..+.+
T Consensus 214 aq~~~v~d 221 (251)
T COG4700 214 AQYVAVVD 221 (251)
T ss_pred HHHHHHHH
Confidence 54444443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00045 Score=70.48 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=83.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
+..+...|++++|+..++++++.+.. +...|..+..+|.+.|++++|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~--------------------------------~~~a~~~~a~~~~~~g~~~eAl 56 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN--------------------------------NAELYADRAQANIKLGNFTEAV 56 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------------CHHHHHHHHHHHHHcCCHHHHH
Confidence 45567889999999999999987533 6778889999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYN 762 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 762 (806)
..++++++ +.|+. ..|..++.+|...|++++|+..|+++++ +.|+.....
T Consensus 57 ~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~ 107 (356)
T PLN03088 57 ADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFT 107 (356)
T ss_pred HHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 99999999 77876 4899999999999999999999999998 566544333
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00087 Score=63.25 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-Chh
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG---DINEAFNLRDEMLKINLVP-NIA 759 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p-~~~ 759 (806)
+.|...|..|+.+|...|+.+.|...|.+..+ +.||.. .+..++.++..+. +..++..+|+++++ ..| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHH
Confidence 34888999999999999999999999999999 777764 6667777665543 57789999999998 556 777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
....|...+...|++.+|...++.|.+ ..|....+..+|..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~ie~ 269 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHHHH
Confidence 888888999999999999999999998 67777778777764
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0011 Score=70.70 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATY 761 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 761 (806)
++.+|..+.-.+...|++++|...++++++ +.|+..+|..++..|...|+.++|++.++++.. +.|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 345555555555555666666666666666 456555666666666666666666666666665 44543343
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.72 E-value=0.011 Score=51.10 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
-|+...-..|..++.+.|+..||...|++....-+. .|....-.+..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-------------------------------~d~a~lLglA~Aq 134 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-------------------------------HDAAMLLGLAQAQ 134 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-------------------------------CCHHHHHHHHHHH
Confidence 577777788999999999999999999998865332 3777888899999
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN---FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 775 (806)
...++..+|...++++-+ ..|+. .+.-.+...|...|++..|...|+.+.+ .-|++..-......+.++|+.+
T Consensus 135 fa~~~~A~a~~tLe~l~e--~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 135 FAIQEFAAAQQTLEDLME--YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred HhhccHHHHHHHHHHHhh--cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999998 44543 2556788899999999999999999999 4566554444556688999887
Q ss_pred HHHHHHHHH
Q 037510 776 RAKRLFCKL 784 (806)
Q Consensus 776 ~A~~~~~~m 784 (806)
+|..-+..+
T Consensus 211 ea~aq~~~v 219 (251)
T COG4700 211 EANAQYVAV 219 (251)
T ss_pred HHHHHHHHH
Confidence 776654443
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.002 Score=68.70 Aligned_cols=89 Identities=15% Similarity=0.070 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 704 VTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
...+.+..++.......| +..+|..++-.+...|++++|...++++++ +.|+...|..++..+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555555554432222 345788887777888999999999999999 55888899999999999999999999999
Q ss_pred HHHHCCCCCCHhhH
Q 037510 783 KLRQKGLTPTVVTY 796 (806)
Q Consensus 783 ~m~~~g~~p~~~~~ 796 (806)
+... +.|..-+|
T Consensus 478 ~A~~--L~P~~pt~ 489 (517)
T PRK10153 478 TAFN--LRPGENTL 489 (517)
T ss_pred HHHh--cCCCCchH
Confidence 9887 66765554
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.72 E-value=0.0014 Score=53.90 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhcHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN----IATYNSL 764 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l 764 (806)
.-.+..++-..|+.++|+.+|++.++.|+..+. ..+-.+...+...|++++|+.++++..... |+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHH
Confidence 334677888999999999999999998877654 378889999999999999999999998742 43 2233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
..++...|+.++|++++-.... ++...|+--|..|..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 5688899999999999887664 445578877777653
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=7.3e-05 Score=46.04 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 167
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.70 E-value=0.00015 Score=53.84 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVG-DINEAFNLRDEMLK 751 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 751 (806)
++.+|..++..+...|++++|+..|++.++ +.|+.. .|..++.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 455777777778888888888888888877 567664 7777777777777 67888888877776
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.015 Score=56.94 Aligned_cols=157 Identities=9% Similarity=0.022 Sum_probs=110.2
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHHH-------------H
Q 037510 561 VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALIS--GWCDAGMLNKAFKAYFDMIEKGFSPNVAI-------------C 625 (806)
Q Consensus 561 ~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~ 625 (806)
++.-.|+.++|.+.-....+.. ++ ..+..++. ++.-.++.+.|...|++.+.. .|+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 4555677777777666666542 11 12222333 234567788888888888765 343321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVT 705 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 705 (806)
..-.+-..+.|++.+|.+.+.+.+..++.. ..|+.-.|.....+..+.|+.+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n----------------------------~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSN----------------------------KKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccc----------------------------cchhHHHHHHhHhhhcccCCch
Confidence 122344568899999999999998766431 2467778888888999999999
Q ss_pred hHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 706 DARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 706 ~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+|+.--++..+ +.|.-. .|..-+.++...++|++|.+.|+++.+.
T Consensus 305 eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 305 EAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988 656543 6767777888889999999999999874
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.00066 Score=54.34 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
+..++..+...|++++|...++++.+.... +..++..++.++...|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 50 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD--------------------------------NADAYYNLAAAYYKLGKY 50 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc--------------------------------cHHHHHHHHHHHHHHHHH
Confidence 456677788899999999999998876422 446778889999999999
Q ss_pred hhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++|.+.+++..+ ..|+. .++..++..+...|++++|...+.+..+
T Consensus 51 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 51 EEALEDYEKALE--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHh--CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 999999999988 45655 4888999999999999999999999876
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.024 Score=55.99 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcC---CCC-CChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----Chh-HHHHHHHHHHh
Q 037510 276 HKMEEAENMLRRMKEED---DVI-VDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM-----NLL-ICNSLINGYCK 345 (806)
Q Consensus 276 g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~ 345 (806)
|++++|++.|++..+.. +.+ .-..++..+...+.+.|++++|.++|++........ +.. .+-..+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 55555555555544320 100 012244555666777777777777777766543221 111 22233335556
Q ss_pred cCCHhHHHHHHHHHhhC
Q 037510 346 LGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 346 ~g~~~~A~~~~~~~~~~ 362 (806)
.|+...|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 67777777777776644
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0015 Score=59.02 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD 738 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 738 (806)
..+..++.++.+.|++++|...+++.++ ..|+.. .+..++..|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCC
Confidence 3455566666666666666666666666 445432 45555555555554
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00012 Score=56.84 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037510 635 LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSAL 714 (806)
Q Consensus 635 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 714 (806)
.|+++.|+.+++++++..... ++...+..++.+|.+.|++++|+.++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~------------------------------~~~~~~~~la~~~~~~~~y~~A~~~~~~- 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTN------------------------------PNSAYLYNLAQCYFQQGKYEEAIELLQK- 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGT------------------------------HHHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHHHHCCCC------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 578999999999998765320 1344566689999999999999999999
Q ss_pred HHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 715 LLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 715 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
.+ ..|+. .....++.+|.+.|++++|++.++++
T Consensus 51 ~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 51 LK--LDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HT--HHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44 44554 35556789999999999999999874
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0033 Score=56.85 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=68.3
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSA 664 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~ 664 (806)
...+..+...+...|++++|...|++.++....+. ...+..++.++.+.|++++|...+++.++..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------- 104 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---------- 104 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------
Confidence 34566677778888999999999998886533332 467788888889999999999999988875422
Q ss_pred hhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 665 INVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
+...+..++.++...|+...+..-+++
T Consensus 105 ----------------------~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 105 ----------------------QPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred ----------------------cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 455666777788777776555544443
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.00066 Score=53.28 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINL-VPNIATYNSLVSGLCNS--------GELDRAKRLFCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~ 798 (806)
..|..|...+++.....+|+.+...|+ .|+..+|+.++.+..+. +++-+.+..|++|...+++|+..+|++
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 334444444555555555555555555 44555555554443322 223445566666666667777777776
Q ss_pred HHHhhh
Q 037510 799 LIDGYC 804 (806)
Q Consensus 799 li~~~~ 804 (806)
+|..+-
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 666553
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.001 Score=67.69 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNS 763 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 763 (806)
.+......+++.+....+.+++..++-+..... ..--..|..+++..|.+.|..++++.+++.=...|+=||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 456677778888888888999999999888741 111223667999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
|++.+.+.|++..|.++...|..++...+..|+..-+.+|.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 99999999999999999999988888888788776666553
No 176
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0017 Score=51.10 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCC-CcChhhHHHHHHHHHHcCC--------hHHHHHHHHHHHHCCCCCCHhHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGC-IPSLRSCNCLLSNLVKNGE--------GYVALLVYEQMMRVGIVPDVFTCSI 197 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~A~~~~~~m~~~~~~~~~~~~~~ 197 (806)
.-|..+...+++...-.+|+.++..|+ .|++.+|+.++.+.+++.- .-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566888888888888888887 7788888888887776532 3345566777777777777777777
Q ss_pred HHHHHHh
Q 037510 198 VVNAYCK 204 (806)
Q Consensus 198 l~~~~~~ 204 (806)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7666543
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00012 Score=43.80 Aligned_cols=29 Identities=45% Similarity=0.948 Sum_probs=15.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 178
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00038 Score=50.78 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=36.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
++..+...|++++|+..|+++++ ..|+.. .+..++.++...|++++|+..|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666777777777777776 446553 666677777777777777777777665
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.51 E-value=0.0016 Score=66.20 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHH
Q 037510 295 IVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKT--GLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFN 372 (806)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 372 (806)
+.+......+++.+....+++++..++-+.... ....-+.|..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345556666666666667777777777766654 222233455577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRV 416 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 416 (806)
.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777666666666666666655554
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00028 Score=52.29 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=56.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037510 722 DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSG-ELDRAKRLFCKLRQ 786 (806)
Q Consensus 722 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 786 (806)
+..+|..++..+...|++++|+..|+++++. .| ++..+..+..++.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3467899999999999999999999999994 46 6778999999999999 79999999999887
No 181
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.50 E-value=0.11 Score=50.68 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037510 485 KMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLM 534 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 534 (806)
+.|..+.|..+-+...+.. +.-...+...+...|..|+|+.|+++.+.-
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4455666666655555442 222355556666666666666666665543
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00025 Score=52.43 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=36.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILI 800 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 800 (806)
.+.|++++|+++|+++.+. .| +...+..++.+|.+.|++++|.++++++.. ..|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 3456666666666666653 33 455555666666666666666666666665 455555555444
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.49 E-value=0.00014 Score=43.63 Aligned_cols=29 Identities=41% Similarity=0.725 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.47 E-value=0.0035 Score=61.03 Aligned_cols=272 Identities=18% Similarity=0.153 Sum_probs=148.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHH--HhcccChhhhhcCCCCCHHHH
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPN----IITYRTLSDGYCKVGNLEEAFKIKNLM--ERREILPSMEKEAIVPSIDMY 555 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 555 (806)
-+|+.|+......+|+..++.| ..| ...|..+..+|.-.+++++|+++...- ..+..-. +. -.....
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd---kl---GEAKss 98 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD---KL---GEAKSS 98 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc---hh---cccccc
Confidence 3566666666666666666665 223 234555666666666777776654321 0000000 00 001112
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHH----HHCCC-CCCHhHHHHHHHHHHccCC--------------------hHHHHHHH
Q 037510 556 NYLISVAFKSRELTSLVDLLAEM----QTMGL-YPNIVTYGALISGWCDAGM--------------------LNKAFKAY 610 (806)
Q Consensus 556 ~~l~~~~~~~~~~~~a~~~~~~~----~~~g~-~p~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 610 (806)
..|.+.+--.|.+++|+..-.+- .+.|- ......+-.+...|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 22444444556666654432221 11110 1112234445555543332 12344444
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCC
Q 037510 611 FDMIEK----GFS-PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCV 685 (806)
Q Consensus 611 ~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (806)
.+-++. |-. .--..|..|.+.|.-.|+++.|+..-+.-+... +...+. .
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia-----------------~efGDr---------A 232 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA-----------------QEFGDR---------A 232 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH-----------------HHhhhH---------H
Confidence 432221 100 012345555666666788888876655432210 000000 0
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHH----CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CC
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLL----TGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKI----N-LV 755 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~ 755 (806)
.....+..+..++.-.|+++.|.+.|+.... .|-.. ...+..+|++.|.-..++++|+.++.+=++. + ..
T Consensus 233 aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 233 AERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred HHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1234677889999999999999999987543 22221 2236668999999999999999999885541 1 12
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 756 PNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 756 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
-....|..|..+|...|..++|+.+.+.-.+
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2456788999999999999999998877543
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.22 Score=52.56 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHH
Q 037510 241 GDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRV 320 (806)
Q Consensus 241 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (806)
|++++|++++-++..+++ -|..+.+.|++-...++++.--....-..-...|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655554321 24445555565555555443211100011123455566666666666666655
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037510 321 LNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIE 400 (806)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 400 (806)
|..-.. ....++++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|.+.+-+- +.
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~- 880 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL- 880 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-
Confidence 543211 112344455444444444443333 234444555556666666666665554322 11
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 401 PSVVTYNTLLKGLCRVGDVDEALHLWLM 428 (806)
Q Consensus 401 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 428 (806)
| ...+..|...++|.+|.++-++
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1234455555566666555443
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0024 Score=61.34 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----Chhc
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP----NIAT 760 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~ 760 (806)
..|......+.+.|++++|+..|+.+++ ..|+. .++..++.+|...|++++|+..|+.+++. -| .+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 3455555555778999999999999999 66776 37889999999999999999999999973 23 2445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+..++.++...|+.++|.++++++++ ..|+....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 56677889899999999999999998 56765543
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.0004 Score=50.69 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
.++..+.+.|++++|+..|+++++.. | +...+..++.++...|++++|..+++++.+ ..|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 36778999999999999999999954 6 677889999999999999999999999987 56653
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.04 Score=57.17 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc-H-----
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT-Y----- 761 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~----- 761 (806)
..+...+..-+.+...+.-|.++|++|-. ...++..+...++|.+|..+.++.-+ +.||... |
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 33444555555666778888888888765 23677778888999999988887665 4454421 1
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 762 -----NSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 762 -----~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..--.+|-++|+..||..+++.+...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22235677888888888888887643
No 189
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0019 Score=57.82 Aligned_cols=84 Identities=15% Similarity=0.312 Sum_probs=54.0
Q ss_pred CCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC-----------------HHHHH
Q 037510 721 PDNFTYSTLIHGYAAV-----GDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGE-----------------LDRAK 778 (806)
Q Consensus 721 p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----------------~~~A~ 778 (806)
.|..+|..++..|.+. |..+-....++.|.+.|+..|..+|+.|++++=+ |+ -+-|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHH
Confidence 4444555555555432 4555555566666666666666666666666554 22 25577
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 779 RLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 779 ~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
+++++|...|+.||..++..|++.+++
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 788888888888888888888877775
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.01 Score=56.29 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHH
Q 037510 619 SPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGI 698 (806)
Q Consensus 619 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 698 (806)
+-|...|..|...|...|+.+.|..-|.+..+... +|+..+..+..++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--------------------------------~n~~~~~g~aeaL 200 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--------------------------------DNPEILLGLAEAL 200 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------------CCHHHHHHHHHHH
Confidence 45777888888888888888888888888877542 3566666666665
Q ss_pred HhcC---ChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 699 CKSG---NVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 699 ~~~g---~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
..+. ...++..+|+++++ ..|+++ +...|...+...|++.+|...|+.|++.
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5432 35678888888888 667665 6667778888888888888888888884
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.37 E-value=0.054 Score=51.81 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh-H---HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 557 YLISVAFKSRELTSLVDLLAEMQTMGLYPNIV-T---YGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 557 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
.....+...|++++|.+.|+++... .|+.. . .-.++.++.+.+++++|...+++.++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455667789999999999999886 34332 2 2345677889999999999999999863
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.37 E-value=0.11 Score=49.69 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=102.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 443 TLLDILFNKGDFYGAVKLWNNILARGFYKNTITF---NTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 443 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.....+...|++++|++.|+++..... -+.... -.++.++.+.+++++|...+++..+........-+.....+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 344445567777777777777776531 122222 3455667777888888888887777542211222222222222
Q ss_pred h--cC---------------ChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 037510 520 K--VG---------------NLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMG 582 (806)
Q Consensus 520 ~--~g---------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g 582 (806)
. .+ +...+.+.+ ..+..++..|-...-..+|...+..+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~---------------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAF---------------------RDFSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHH---------------------HHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 1 11 111111111 12333444444445555665555555432
Q ss_pred CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 583 LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK--GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 583 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
-...-..+..-|.+.|.+..|+.-++.+++. +.+........++.+|...|..++|......+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111124455688899999999999999974 223345666778889999999999988877654
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.37 E-value=0.011 Score=48.78 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDF 651 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 651 (806)
..++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555555555544332 223334445555555555555555555543
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0037 Score=56.31 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSL 764 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 764 (806)
...|..++..+...|++++|+..|++.+.....|. ..+|..++..|...|++++|+..+++++. +.| ...++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 44677888889999999999999999988422222 24899999999999999999999999998 345 44556677
Q ss_pred HHHHH-------hcCCHHHHHHHHHHH
Q 037510 765 VSGLC-------NSGELDRAKRLFCKL 784 (806)
Q Consensus 765 ~~~~~-------~~g~~~~A~~~~~~m 784 (806)
...+. +.|++++|...+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 77777 888888666665543
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.29 E-value=0.005 Score=60.52 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 264 TYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 264 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
+|..+++..-+.+..+.|..+|.+..+......+.....+++. +...++.+.|..+|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4556666666666666666666666644223233322222222 22245555577777766654 344566666666777
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 344 CKLGQVCEAKRVLRCMGDWNLRPDS---FSFNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 344 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776654 22222 36666666666677777777777666653
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.011 Score=57.78 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH----HCCC-CCCHhHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCCHHH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQ----TMGL-YPNIVTYGALISGWCDAGMLNKAFKAYFDMIEK----G-FSPNVAI 624 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~----~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 624 (806)
|..|.+.|.-.|+++.|+...+.-. +-|- ......+..+.+++.-.|+++.|.+.|+..... | -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4445555555566665554443321 1111 112345677888888889999999888876532 2 1223556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCCh
Q 037510 625 CSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNV 704 (806)
Q Consensus 625 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 704 (806)
..+|.+.|.-..++++|+.++.+-+..- +...+. .-....+.+|..+|...|..
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIA-----------------qeL~Dr---------iGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIA-----------------QELEDR---------IGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHh---------hhhHHHHHHHHHHHHhhhhH
Confidence 6778888888888999988887654320 000000 01345777889999999999
Q ss_pred hhHHHHHHHHHH
Q 037510 705 TDARRIFSALLL 716 (806)
Q Consensus 705 ~~A~~~~~~~~~ 716 (806)
++|+.+.+.-++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999888777654
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.25 Score=49.16 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 037510 335 ICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLC 414 (806)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 414 (806)
+.+..|.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... +-++..|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666677777777766554 46777777777777777777766654332 124466777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKL 460 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 460 (806)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 777777777666551 113455666677777666654
No 198
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.22 E-value=0.0066 Score=59.66 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hcHHHHHHHHHhcCCHHHH
Q 037510 701 SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI---ATYNSLVSGLCNSGELDRA 777 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A 777 (806)
.++.+.|..+|+...+. +..+...|...++-+...|+.+.|..+|++.+.. +.++. ..|..++.-=.+.|+++.+
T Consensus 49 ~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v 126 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESV 126 (280)
T ss_dssp CS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHH
T ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHH
Confidence 34455566666666663 2223345555666666666666666666666653 22222 2555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 778 KRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 778 ~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
.++.+++.+ ..|+......+++
T Consensus 127 ~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 127 RKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHHHHHHH--HhhhhhHHHHHHH
Confidence 666666665 4455444444443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.20 E-value=0.002 Score=48.34 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 732 GYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.|.+.+++++|++.+++++. +.| ++..+...+.++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555554 223 334444444555555555555555555544
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.0089 Score=53.65 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=26.5
Q ss_pred CHhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 037510 191 DVFTCSIVVNAYCK-----EKSMEKALDFVKEMENLGFELNVVTYNSLIDGYV 238 (806)
Q Consensus 191 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 238 (806)
|..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 44444445544442 2445555555666666666666666666665553
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.13 E-value=0.00076 Score=49.78 Aligned_cols=62 Identities=29% Similarity=0.395 Sum_probs=50.7
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
.+.|++++|++.|+++.+ ..|+. ..+..++.+|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 568999999999999999 67865 5788999999999999999999999998 45764444443
No 202
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.13 E-value=0.36 Score=48.53 Aligned_cols=454 Identities=14% Similarity=0.133 Sum_probs=222.3
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH--HH
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPS------LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNA--YC 203 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~--~~ 203 (806)
+.+++++.+|.++|.++.+.. ..+ ....+.++++|...+ .+..........+. .|. ..|-.+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 457899999999999887642 112 224567778877553 45555555555442 232 234444443 34
Q ss_pred hcCChhHHHHHHHHHHHc--CCC------------cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChhhH
Q 037510 204 KEKSMEKALDFVKEMENL--GFE------------LNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG----ISRTAVTY 265 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 265 (806)
+.+.+.+|.+.+..-.+. +.. +|-..-+..++++...|++.+++.+++++...= ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 788999999988776544 222 123334566778889999999999988887653 33678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 266 TTLTKGYCKQHKMEEAENMLRRMKEED--DVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 266 ~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
+.++-.+.+. .|-++++.. .+-|| |--++..|.+.=+.-++ -.-..+.|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHH
Confidence 8766555432 233332221 12232 33344444332111111 00011223333333333333
Q ss_pred Hhc--CCHhHHHHHHHHHhhCCCCCChhc-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CcchHHHHHHHHHhc
Q 037510 344 CKL--GQVCEAKRVLRCMGDWNLRPDSFS-FNTLVDGYCRECDMTEAFRLCAEMLRQGIEP----SVVTYNTLLKGLCRV 416 (806)
Q Consensus 344 ~~~--g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~ 416 (806)
.-. .+..--.++++.....-+.|+... ...++..+.+ +.+++..+.+.+....+.+ =..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122222333333344334454322 2223333333 4455555544443321111 134567777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 417 GDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
++...|.+.+.-+.-- .|+...-..++ -..+.+..|... |...++. ...-+.++
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kll----------ls~~~lq~Iv~~----DD~~~Tk----------lr~yL~lw 365 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLL----------LSPKVLQDIVCE----DDESYTK----------LRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhh----------cCHHHHHHHHhc----chHHHHH----------HHHHHHHH
Confidence 8888887777766553 23322111110 011122222211 1111111 11111222
Q ss_pred HHHHHcCCCCCHH-HHHHH---HHHHHhcCC-hHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHH----HHHH---h
Q 037510 497 DKMKELGCLPNII-TYRTL---SDGYCKVGN-LEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLI----SVAF---K 564 (806)
Q Consensus 497 ~~~~~~~~~~~~~-~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~ 564 (806)
+.....++ |.. ....+ ..-+.+.|. -++|+++++.+.+ . ..-|...-|.+. ..|. .
T Consensus 366 e~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---------f-t~yD~ec~n~v~~fvKq~Y~qaLs 433 (549)
T PF07079_consen 366 EEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---------F-TNYDIECENIVFLFVKQAYKQALS 433 (549)
T ss_pred HHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---------h-ccccHHHHHHHHHHHHHHHHHHHh
Confidence 22222211 110 00001 112333333 4444444444311 0 011111111111 1111 1
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCH----hHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNI----VTYGALISG--WCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKI 638 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 638 (806)
...+.+-.++-+-+.+.|+.|-. ..-|.|.+| +...|++.++.-.-..+.+ +.|++.+|..++-++....++
T Consensus 434 ~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 434 MHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhH
Confidence 22344445555556667776643 334555554 4567899888766666655 578999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037510 639 DEANIFLQKMV 649 (806)
Q Consensus 639 ~~A~~~~~~~~ 649 (806)
++|..++.++.
T Consensus 512 ~eA~~~l~~LP 522 (549)
T PF07079_consen 512 QEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC
Confidence 99999998863
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.13 Score=53.56 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
+...+..-+.+...+.-|-++|.+|-+. ..+++.....++|++|..+.++..+.-... ++-.+.+..+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV---y~pyaqwLAE 816 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV---YMPYAQWLAE 816 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc---cchHHHHhhh
Confidence 3333333344555566666666665432 245556666777777777766654432110 0000001110
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
.+ -+.-.-.+|-+.|+..+|..+++++..
T Consensus 817 ~D-------------------rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 ND-------------------RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hh-------------------hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 00 122233567778888888888888765
No 204
>PRK15331 chaperone protein SicA; Provisional
Probab=97.04 E-value=0.018 Score=49.48 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG 772 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 772 (806)
...-+...|++++|..+|+-+.. ..|-.. -|..|+.+|-..+++++|+..|..+...+ .-|+..+.....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 44556789999999999999988 556543 56788888888999999999999998854 347788888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 037510 773 ELDRAKRLFCKLRQ 786 (806)
Q Consensus 773 ~~~~A~~~~~~m~~ 786 (806)
+.+.|+.-|+..++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999987
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.15 Score=47.03 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHH
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQ 670 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 670 (806)
+.++..+...|.+.-...++.+.++...+.++.....+++.-...|+.+.|...|++..+..-.-
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL--------------- 245 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL--------------- 245 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---------------
Confidence 34445555566666677777777766545566666666666667777777777777655321110
Q ss_pred HHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 671 KIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
+...-+..+.......|.-++++.+|...+.++.+ ..|.. +.-|.-+-+..-.|+...|++..+.|
T Consensus 246 -----------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 246 -----------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred -----------hccchhHHHHhhhhhheecccchHHHHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 00111222223333445566677777777777766 33433 34444444444556777777777777
Q ss_pred HHcCCCCChhcHHHHHHHH
Q 037510 750 LKINLVPNIATYNSLVSGL 768 (806)
Q Consensus 750 ~~~~~~p~~~~~~~l~~~~ 768 (806)
+. ..|.+.+-+.++..+
T Consensus 313 ~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 313 VQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hc--cCCccchhhhHHHHH
Confidence 76 455555544444333
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.17 Score=46.63 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHH---
Q 037510 158 RSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLI--- 234 (806)
Q Consensus 158 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 234 (806)
...+.++..+.-.|++.-....+.+..+...+.++.....+.+.-.+.|+.+.|..+|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777777787788888888777666677777777777777888888888887766443233333333332
Q ss_pred --HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 235 --DGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 235 --~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
..|.-.+++-.|...+++++..+. .|+..-|.-.-+..-.|+...|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455666667777766666543 24444454444444556777777777777654
No 207
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.0015 Score=49.75 Aligned_cols=61 Identities=26% Similarity=0.420 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKI--NLV---PN-IATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
+|+.++..|...|++++|++.|+++++. ... |+ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666655542 011 11 3345556666666666666666666543
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.93 E-value=0.007 Score=61.10 Aligned_cols=66 Identities=18% Similarity=0.064 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037510 685 VPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKI 752 (806)
Q Consensus 685 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 752 (806)
+.+...++.++.+|.+.|++++|+..|++.++ +.|+.. +|..++.+|...|+.++|++.++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999 789864 5999999999999999999999999984
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0036 Score=47.64 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHHHHHHHC--CCCC---C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 688 YVVYNIVIAGICKSGNVTDARRIFSALLLT--GFSP---D-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 688 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..+++.+...|...|++++|++.|++.++. ...+ + ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 347899999999999999999999998854 1222 2 23899999999999999999999999876
No 210
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.91 Score=49.44 Aligned_cols=119 Identities=15% Similarity=0.211 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCN----CLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIV 198 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 198 (806)
.....-+..+.+...++.|+.+-..--. +..+.. .-.+.+.+.|++++|...|-+-... +.| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~-----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHL-----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 3445556666666666666666554321 222222 2234445666677766666655432 222 124
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 037510 199 VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWT 253 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 253 (806)
+.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.+|.++-.++.+..
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 45555555555566666666666643 3444455666666666666655555433
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.88 E-value=0.0044 Score=46.45 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=53.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT 760 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 760 (806)
...|.+.+++++|.+.++.+++ ..|+.. .|...+.++.+.|++++|.+.|++.++ ..|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 3578899999999999999999 778775 788899999999999999999999998 4565443
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.014 Score=51.05 Aligned_cols=97 Identities=27% Similarity=0.433 Sum_probs=67.6
Q ss_pred HHhcCChhhHHHHHHHHHHC--C-CCCCHH------------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 698 ICKSGNVTDARRIFSALLLT--G-FSPDNF------------------TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~--g-~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
....|+.+.+...++++... | +-|+.. +...++..+...|++++|+.++++++. +.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP 93 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA--LDP 93 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HST
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCC
Confidence 34567777777777777764 1 222211 234566677889999999999999999 567
Q ss_pred -ChhcHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHhhH
Q 037510 757 -NIATYNSLVSGLCNSGELDRAKRLFCKLR-----QKGLTPTVVTY 796 (806)
Q Consensus 757 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 796 (806)
|...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 94 ~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 94 YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 77899999999999999999999999874 34999998774
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.016 Score=55.75 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 599 DAGMLNKAFKAYFDMIEKGFSPN----VAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 599 ~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
+.|++++|+..|+.+++. .|+ ...+..++.+|...|++++|...|+.+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred hcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555543 122 12344444445555555555555555444
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.19 Score=46.73 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC--cChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCI--PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (806)
..+-.....+...|++.+|++.|+.+....+. -...+.-.++.++.+.|+++.|...|+++++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555667889999999999988876322 12346667788888889999999998888774
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.25 Score=45.98 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHH
Q 037510 68 IKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDN 147 (806)
Q Consensus 68 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 147 (806)
.......+..+...|++.+|...|..++.. ++..+..+.+.-.++.++.+.|++++|+..|+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-----------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445666778888999999999999988654 344455677788899999999999999999999
Q ss_pred hhhcCCC
Q 037510 148 MGKYGCI 154 (806)
Q Consensus 148 ~~~~~~~ 154 (806)
..+.-+.
T Consensus 68 fi~~yP~ 74 (203)
T PF13525_consen 68 FIKLYPN 74 (203)
T ss_dssp HHHH-TT
T ss_pred HHHHCCC
Confidence 8886433
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.79 E-value=0.62 Score=45.86 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=84.3
Q ss_pred hcCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHH--HHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCC
Q 037510 43 KLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVH--ILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAF 120 (806)
Q Consensus 43 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 120 (806)
.+-..|..+-+.|+-.++..||+ .|-. +-...|+-..|+.+-.+.-++ ...
T Consensus 64 ~iw~sP~t~~Ryfr~rKRdrgyq-------ALStGliAagAGda~lARkmt~~~~~l--------------------lss 116 (531)
T COG3898 64 SIWESPYTARRYFRERKRDRGYQ-------ALSTGLIAAGAGDASLARKMTARASKL--------------------LSS 116 (531)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHH-------HHhhhhhhhccCchHHHHHHHHHHHhh--------------------hhc
Confidence 34567888888887776555544 3333 234566666666655443222 111
Q ss_pred CHHHHHHHHHHH--HHcCChhhHHHHHHHhhhcCCCcChh--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 037510 121 SPTVFDMILKIY--AQKGMLKNALHVFDNMGKYGCIPSLR--SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCS 196 (806)
Q Consensus 121 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 196 (806)
+.+-+..|+.+- .-.|++++|.+-|+.|... |... -...|.-.--+.|..+.|.+.-++.-... +.-...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 222222333332 2368888888888888862 2222 12223333346677777777777665532 12345666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~ 221 (806)
..+...|..|+++.|+++++.-...
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Confidence 7777778888888888877766543
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.015 Score=54.51 Aligned_cols=101 Identities=23% Similarity=0.277 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ChhcHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVP-NIATYNS 763 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~ 763 (806)
.|+.-+. +.+.|++..|...|...++. -|+.. ++-.|+.++...|++++|..+|..+.+. +-.| -+..+-.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5665554 55778899999999999994 46543 6778999999999999999999999983 2223 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVT 795 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 795 (806)
|..+..+.|+.++|..+++++.+ -.|+...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k--~YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK--RYPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--HCCCCHH
Confidence 89999999999999999999988 4666443
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.0094 Score=60.20 Aligned_cols=67 Identities=15% Similarity=0.086 Sum_probs=59.0
Q ss_pred CCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----cHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 719 FSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA----TYNSLVSGLCNSGELDRAKRLFCKLRQK 787 (806)
Q Consensus 719 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 787 (806)
..|+. ..|+.++.+|.+.|++++|+..|+++++ +.|+.. +|+++..+|...|+.++|+..+++.++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34655 4899999999999999999999999999 678643 5899999999999999999999998874
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.086 Score=46.07 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATY 761 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 761 (806)
+...++..+...|++++|...++.++. ..|.. ..|..++.+|...|+..+|++.|+++.+ .|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 566678888899999999999999999 67765 5999999999999999999999999864 5899987653
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=96.65 E-value=0.056 Score=46.60 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=62.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
..-+...|++++|..+|+-+.-.++- |..-|..|+.++...+++++|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~--------------------------------n~~Y~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY--------------------------------NPDYTMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--------------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 33455778888888888877765432 5556777777777888888888
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|..... +.++. ..+-..+.+|...|+.++|...|+.+++
T Consensus 92 ~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 92 DLYAVAFT--LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHH--cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88877776 33433 2445677778888888888888887776
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=1.2 Score=47.32 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=121.2
Q ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC--------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037510 224 ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEK-GIS--------RTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDV 294 (806)
Q Consensus 224 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 294 (806)
.|....|..|.......-+++.|+..|-+.... |++ .+...-.+=+.+ --|++++|+++|-+|.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 466777777776666666666666666544331 111 011111122223 248899999998888665
Q ss_pred CCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhc
Q 037510 295 IVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEM----NLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFS 370 (806)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 370 (806)
...|..+.+.|++-...++++.- |-.. -...++.+.+.+.....+++|.+.|..-...
T Consensus 764 -------DLAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 764 -------DLAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred -------hhhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 23466677788887777766421 1111 2346888888888888888888888654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 037510 371 FNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFN 450 (806)
Q Consensus 371 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (806)
...+.++.+..++++...+...+ +-+....-.+..++.+.|.-++|.+.|-+-.. | ...++.+..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence 23455565555555555544443 33556667778888888888888776644211 1 123455666
Q ss_pred cCChhHHHHHHHHH
Q 037510 451 KGDFYGAVKLWNNI 464 (806)
Q Consensus 451 ~g~~~~A~~~~~~~ 464 (806)
.++|.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777665543
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.55 E-value=0.17 Score=51.64 Aligned_cols=145 Identities=17% Similarity=0.079 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 603 LNKAFKAYFDMIE-KGFSPN-VAICSKLVSTLCR---------LGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 603 ~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
.+.|+.+|.+++. ....|+ ...|..+..++.. .....+|.++.++..+.+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~----------------- 336 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV----------------- 336 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-----------------
Confidence 4566667777762 122343 3334333333221 22355677777777776633
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
|+.+...++.++.-.|+++.|...|++... +.||.. +|...+..+.-.|+.++|.+.+++.+
T Consensus 337 ---------------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 ---------------DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred ---------------CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888899988999999999999999999 889985 88889999999999999999999998
Q ss_pred HcCCCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 751 KINLVPNI---ATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 751 ~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
+ +.|.. ....-.++.|+.. .+++|.+++-+-
T Consensus 400 r--LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 400 Q--LEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred c--cCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 8 55632 2333334467765 457888876553
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.061 Score=53.19 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
.+.|.+.|++..|...|+++...=..- .....+..+....+ -..+++.|..+|.+.+++.+|+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~-------~~~~~ee~~~~~~~----------k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYR-------RSFDEEEQKKAEAL----------KLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhcc-------ccCCHHHHHHHHHH----------HHHHhhHHHHHHHhhhhHHHHH
Confidence 345777888888888887766420000 00001111111111 2347788889999999999999
Q ss_pred HHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDR-AKRLFCKLR 785 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~ 785 (806)
+.-.+.++ +.|+++ +.---+.+|...|+++.|+..|+++++ +.| |-.+-+.|+.+-.+..+.++ ..++|..|-
T Consensus 278 ~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 278 ESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 667765 777889999999999999999999999 778 55566666666666655544 477888886
Q ss_pred H
Q 037510 786 Q 786 (806)
Q Consensus 786 ~ 786 (806)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 5
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.27 E-value=0.84 Score=45.97 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 471 KNTITFNTMIKGLCKMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 471 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 503 (806)
.+.+.+.+++.+..-.|+.++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 456666777888888888888888888888763
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.26 E-value=0.41 Score=46.46 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=93.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 591 GALISGWCDAGMLNKAFKAYFDMIEKGFS-----PNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 591 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.++..++...+.++++++.|+.+.+.... ....++-.|...|.+..++++|..+..++.+.--.. ...|+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-----~l~d~ 200 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-----GLKDW 200 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-----CcCch
Confidence 34666777788899999999988863211 134578889999999999999998888766421000 00000
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHH----CCCCCCHH-hHHHHHHHHHhcCCHH
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLL----TGFSPDNF-TYSTLIHGYAAVGDIN 740 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~-~~~~l~~~~~~~g~~~ 740 (806)
... -...+...|.-++...|++..|.+.-++..+ .|-.|... ....+++.|...|+.+
T Consensus 201 ~~k-----------------yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e 263 (518)
T KOG1941|consen 201 SLK-----------------YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLE 263 (518)
T ss_pred hHH-----------------HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHh
Confidence 000 0112334456678888999888888877654 34334332 5678899999999999
Q ss_pred HHHHHHHHHHH
Q 037510 741 EAFNLRDEMLK 751 (806)
Q Consensus 741 ~A~~~~~~~~~ 751 (806)
.|+.-|+.+..
T Consensus 264 ~af~rYe~Am~ 274 (518)
T KOG1941|consen 264 RAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHH
Confidence 99998888654
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=0.91 Score=45.71 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=93.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhhhhhhh
Q 037510 592 ALISGWCDAGMLNKAFKAYFDMIEKG---FSPNVAICSKLVSTLCR---LGKIDEANIFLQKMVDFDFVPDLKYMASSAI 665 (806)
Q Consensus 592 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 665 (806)
.++-+|....+++.-+++.+.+.... +.....+-...+-++.+ .|+.++|+.++..+......
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~----------- 214 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN----------- 214 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-----------
Confidence 44445777777777777777776531 11122233344555666 77888888887775443222
Q ss_pred hhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHH----h-----cCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037510 666 NVDAQKIAMSLDESARSLCVPNYVVYNIVIAGIC----K-----SGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 736 (806)
+++.+|..++..|. . ....++|+..|.+.-+ +.||..+=-.++..+...
T Consensus 215 --------------------~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 215 --------------------PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLA 272 (374)
T ss_pred --------------------CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHc
Confidence 24445555555442 1 1236778888887777 557665322333333333
Q ss_pred CCHH----HHHHHH---HH-HHHcCCCC---ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 037510 737 GDIN----EAFNLR---DE-MLKINLVP---NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVV 794 (806)
Q Consensus 737 g~~~----~A~~~~---~~-~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 794 (806)
|... +..++- .. ..+.|... |.-.+.++..+..-.|+.++|.+..++|.+ ..|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcch
Confidence 3222 222222 11 11233322 344456777778888899999999999887 345443
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.14 E-value=0.28 Score=52.25 Aligned_cols=163 Identities=18% Similarity=0.093 Sum_probs=110.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCChhh
Q 037510 590 YGALISGWCDAGMLNKAFKAYFDMIEKGFSPNV------AICSKLVSTLCR----LGKIDEANIFLQKMVDFDFVPDLKY 659 (806)
Q Consensus 590 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 659 (806)
+..++....=.|+-+.+++.+.+..+.+---.+ ..|..++..++. ....+.|.++++.+.+.-
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y------- 263 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY------- 263 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------
Confidence 445566666778888888888887763211111 123333333332 456788889998888763
Q ss_pred hhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHH-HHHHHHhcCChhhHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHh
Q 037510 660 MASSAINVDAQKIAMSLDESARSLCVPNYVVYNI-VIAGICKSGNVTDARRIFSALLLTG-FSP--DNFTYSTLIHGYAA 735 (806)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~ 735 (806)
|+...|.. -+..+...|++++|++.|++..... .-| ....+--+++.+.-
T Consensus 264 --------------------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 264 --------------------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF 317 (468)
T ss_pred --------------------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH
Confidence 45555543 4567788999999999999876521 111 22366788899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLV-SGLCNSGEL-------DRAKRLFCKLRQ 786 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~ 786 (806)
.++|++|.+.|.++.+.+ .-+..+|..+. .++...|+. ++|.+++.+++.
T Consensus 318 ~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999999999853 33455554444 456678888 899999988753
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.07 E-value=1.9 Score=43.48 Aligned_cols=148 Identities=15% Similarity=0.210 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 037510 554 MYNYLISVAFKSRELTSLVDLLAEMQTMG-LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC-SKLVST 631 (806)
Q Consensus 554 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~ 631 (806)
+|-.+++...+...++.|..+|-++.+.| +.+++..+++++.-++ .|+...|.++|+--+.+ -||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 44456667777888999999999999988 5677888888888665 58889999999877765 3444433 455666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+.+.++-+.|..+|+..+.+--.. .-..+|..+|.--..-|++..+..+=
T Consensus 476 Li~inde~naraLFetsv~r~~~~------------------------------q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKT------------------------------QLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHh------------------------------hhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 778899999999999766431000 01237888998888999999999988
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhc
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~ 736 (806)
+.|.+ .-|...+-......|.-.
T Consensus 526 ~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 526 ERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHH--HcCcHhHHHHHHHHHhhh
Confidence 88888 667665544444445443
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.04 E-value=0.07 Score=43.25 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCh--hcHHHHHHHHHh
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKI-NLVPNI--ATYNSLVSGLCN 770 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~ 770 (806)
.-++...|+++.|++.|.+.+. +.|.. .+||.-..++.-+|+.++|++-++++++. |-+... ..|..-...|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4467899999999999999999 77765 58999999999999999999999999983 322111 233344456788
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 037510 771 SGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~g~~ 790 (806)
.|+.+.|..-|+..-+.|.+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 89999999988887665543
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=3.1 Score=45.59 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=35.8
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALD 213 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 213 (806)
++|++++|...|-+.+..- .| ..++.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.+
T Consensus 380 ~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred hcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 4555555555555444320 11 12233344444444455555555555543 33333445555555555555544
Q ss_pred HHHHH
Q 037510 214 FVKEM 218 (806)
Q Consensus 214 ~~~~~ 218 (806)
+.+..
T Consensus 453 fI~~~ 457 (933)
T KOG2114|consen 453 FISKC 457 (933)
T ss_pred HHhcC
Confidence 44443
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=3.1 Score=44.98 Aligned_cols=334 Identities=16% Similarity=0.115 Sum_probs=167.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD---LNGAKRVLEWTCEKGISRTAVTYTTLTKGYC 273 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 273 (806)
.++.-+...+.+..|+++-.-+...-..- ..+|.....-+.+..+ .+-+..+-+++... . ....+|..+.+--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 35566667777777777766664321111 3455555555555432 12222222222221 1 34456777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC---ChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHh
Q 037510 274 KQHKMEEAENMLRRMKEEDDVIV---DEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVC 350 (806)
Q Consensus 274 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 350 (806)
..|+.+-|..+++.=.......| +..-+...+.-+...|+.+-...++-.+...- +...+.. ...+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhch
Confidence 78888888777654322210000 11122333333444444444444444443320 1111111 112333
Q ss_pred HHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHH--HHHHC-CCCCCcchHHHHHHHHHhcCCHHHH-----
Q 037510 351 EAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCA--EMLRQ-GIEPSVVTYNTLLKGLCRVGDVDEA----- 422 (806)
Q Consensus 351 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a----- 422 (806)
.|..+|.+..+.. |.. .+-+.| +.++-..+...|. ...+. -+.+-........+.+.+.....-.
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 4445554433311 100 011112 2222222222111 10000 0112222233444555554432211
Q ss_pred -----HHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 423 -----LHLWLMMLK-RCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 423 -----~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
+.+.+.+.. .|......+.+--+.-+...|+...|.++-.+.. -||-..|-.-+.+++..++|++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 122222221 1222333445555666677888999988877765 478888888899999999999877766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 037510 497 DKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLA 576 (806)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 576 (806)
+... .+.-|..++.+|.+.|+.++|.+++.+. .+ +...+.+|.+.|++.+|.++--
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----------~~-------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----------GG-------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhcc-----------CC-------hHHHHHHHHHhccHHHHHHHHH
Confidence 5443 2456788899999999999999988755 11 1145667777888777776543
Q ss_pred H
Q 037510 577 E 577 (806)
Q Consensus 577 ~ 577 (806)
+
T Consensus 795 ~ 795 (829)
T KOG2280|consen 795 E 795 (829)
T ss_pred H
Confidence 3
No 232
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.93 E-value=0.18 Score=42.18 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
|..++..++.++++.|+.+....+++....-+........ . -...+...|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~--------------~--~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEG--------------D--YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccC--------------c--cCCCCCCCCCHHHHHHHHHHHHh
Confidence 4566778888888888888888888776644322110000 0 01123345888899999999999
Q ss_pred cCChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhc
Q 037510 701 SGNVTDARRIFSALLLT-GFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 736 (806)
.|++..|.++.+...+. +++-+..+|..|+.-+...
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999888876 6555667888777655443
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.091 Score=52.05 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=86.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC-----CCCCC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037510 694 VIAGICKSGNVTDARRIFSALLLT-----GFSPD---------NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA 759 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 759 (806)
-+..|.+.|++..|...|+++... +..+. ..++..|..+|.+.+++.+|++...+.+... .+|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 466889999999999999987642 12221 2267889999999999999999999999943 34777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
...-=+.+|...|+++.|+..|+++++ +.|+....+.=|..|
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 777888999999999999999999999 899887766555444
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=1.4 Score=40.58 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHH
Q 037510 63 KFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNAL 142 (806)
Q Consensus 63 ~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 142 (806)
.+..-...|..-+..+-.+++|+.|...|.+.++-...+... | -...-++.|.
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---f------------------------hAAKayEqaa 78 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---F------------------------HAAKAYEQAA 78 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---H------------------------HHHHHHHHHH
Confidence 444445678888889999999999998887776432222111 1 1122234444
Q ss_pred HHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHh--HHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 143 HVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV--GIVPDVF--TCSIVVNAYCKEKSMEKALDFVKEM 218 (806)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 218 (806)
-+.+++.+.. --+..++--...|..+|.++-|-..+++.-+. ++.|+.. .|..-+..+...++...|.++
T Consensus 79 mLake~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---- 152 (308)
T KOG1585|consen 79 MLAKELSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---- 152 (308)
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH----
Confidence 4444444421 01223444455667777776666666654331 2333221 122222222222222223222
Q ss_pred HHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037510 219 ENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG----ISRT-AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDD 293 (806)
Q Consensus 219 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 293 (806)
+......+.+...+++|-..|.+-.... --++ -..|...|-.|.-..++..|...++.--+.++
T Consensus 153 -----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 153 -----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred -----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 3333445555566666555444322110 0011 12344555556666777777777776444322
Q ss_pred C--CCChHhHHHHHHHHHhcCChHHHHHHH
Q 037510 294 V--IVDEYAYGVLIDGYCKVGKVDEAIRVL 321 (806)
Q Consensus 294 ~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (806)
+ +.+..+...|+.+| ..|+.+++..++
T Consensus 222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred ccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 2 22344566666655 445666555443
No 235
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.83 E-value=2.3 Score=42.48 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 037510 370 SFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILF 449 (806)
Q Consensus 370 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 449 (806)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-++..|..++..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445555666666666666554442 35666667777777777777665554321 123456666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 037510 450 NKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIF 496 (806)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 496 (806)
+.|+..+|..+...+. +..-+..|.+.|.+.+|.+..
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 6676666666655411 134455566666666665543
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.75 E-value=0.4 Score=46.55 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHH----HHHHHCC-CCCCHhHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCC---CHH
Q 037510 553 DMYNYLISVAFKSRELTSLVDLL----AEMQTMG-LYPNIVTYGALISGWCDAGMLNKAFKAYFDMIE-KGFSP---NVA 623 (806)
Q Consensus 553 ~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~ 623 (806)
.++..+..+.++.|.+++++..- +-..+.. -.---..|..+..++.+..++.+++.+-..-.. .|..| ...
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45566677777777777665432 1111110 000123455556666666666666665554443 22223 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
....+..+....+.++++++.|+.+.+.-...+ .......++-.|...|....+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--------------------------D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNND--------------------------DAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--------------------------CceeeeehhhhHHHHHHHHHh
Confidence 334566777778889999999998876421111 001123467788899999999
Q ss_pred hhhHHHHHHHHHHC--CCCCCH--H-----hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ChhcHHHHHHHHH
Q 037510 704 VTDARRIFSALLLT--GFSPDN--F-----TYSTLIHGYAAVGDINEAFNLRDEMLK----INLVP-NIATYNSLVSGLC 769 (806)
Q Consensus 704 ~~~A~~~~~~~~~~--g~~p~~--~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~ 769 (806)
+++|..+..+..+. .+..+. . +...|.-++...|..-.|.+..+++.+ .|-.+ -......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 99998888777652 122111 1 334566688889999999999988876 34333 2334567889999
Q ss_pred hcCCHHHHHHHHHHH
Q 037510 770 NSGELDRAKRLFCKL 784 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m 784 (806)
..|+.|.|..-|+..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 999999998888774
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.73 E-value=3.4 Score=43.66 Aligned_cols=184 Identities=13% Similarity=0.045 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 037510 507 NIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPN 586 (806)
Q Consensus 507 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 586 (806)
+..+|..-++--...|+.+...-+++... .....-...|-..+.-....|+.+-|..++....+--++-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercl----------i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCL----------IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHH----------hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 34677777777788888888888887661 11112223344444445555888777777766554322222
Q ss_pred HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHhhCCCCCChhhhhh
Q 037510 587 IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA-ICSKLVSTLCRLGKIDEAN---IFLQKMVDFDFVPDLKYMAS 662 (806)
Q Consensus 587 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~ 662 (806)
+.+-..-.......|++..|..+++...+. . |+.. .-..-+....+.|..+.+. .++........
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--------- 434 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--------- 434 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc---------
Confidence 222111112234678999999999998876 3 5433 2233355566788888877 33333332211
Q ss_pred hhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHH-----HHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhc
Q 037510 663 SAINVDAQKIAMSLDESARSLCVPNYVVYNIVIA-----GICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAV 736 (806)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~ 736 (806)
+..+...+.- .+.-.++.+.|..++.++.+ +.|+. ..|..++..+...
T Consensus 435 ------------------------~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 435 ------------------------NNGILEKLYVKFARLRYKIREDADLARIILLEAND--ILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred ------------------------CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhC
Confidence 1112222221 23445788999999999998 55554 5788888877666
Q ss_pred C
Q 037510 737 G 737 (806)
Q Consensus 737 g 737 (806)
+
T Consensus 489 ~ 489 (577)
T KOG1258|consen 489 P 489 (577)
T ss_pred C
Confidence 5
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.70 E-value=0.39 Score=40.56 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
....+.|++++|.+.|+.+...-+.+. -...+.-.|+.+|.+.|++++|..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~-----------------------------ya~qAqL~l~yayy~~~~y~~A~a 68 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGE-----------------------------YAEQAQLDLAYAYYKQGDYEEAIA 68 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCc-----------------------------ccHHHHHHHHHHHHHccCHHHHHH
Confidence 334466777777777777766543321 122344456777777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 037510 710 IFSALLLTGFSPDN 723 (806)
Q Consensus 710 ~~~~~~~~g~~p~~ 723 (806)
.+++.++ +.|++
T Consensus 69 ~~~rFir--LhP~h 80 (142)
T PF13512_consen 69 AYDRFIR--LHPTH 80 (142)
T ss_pred HHHHHHH--hCCCC
Confidence 7777777 56655
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.69 E-value=0.16 Score=41.25 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=74.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
-++...|+.+.|++.|.+.+..-+ .++..||.-..++.-+|+.++|++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P--------------------------------~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP--------------------------------ERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc--------------------------------cchHhhccHHHHHHHcCChHHHHH
Confidence 356788999999999999887532 367799999999999999999999
Q ss_pred HHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 710 IFSALLLTGFSPDN---FTYSTLIHGYAAVGDINEAFNLRDEMLKIN 753 (806)
Q Consensus 710 ~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 753 (806)
-+++.++..-.-.. .+|..-+..|...|+-+.|..-|+.+.+.|
T Consensus 99 DLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 99 DLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 99999985111122 267777778899999999999999998866
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.69 E-value=2.8 Score=42.38 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 623 AICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 623 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
..|-..++...+..-++.|.++|-++.+.++.. ++..++++++.-++ .|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~------------------------------h~vyi~~A~~E~~~-~~ 446 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG------------------------------HHVYIYCAFIEYYA-TG 446 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC------------------------------cceeeeHHHHHHHh-cC
Confidence 344555666667777888888888888776432 46667777776554 56
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDNFTY-STLIHGYAAVGDINEAFNLRDEMLKINLVPN--IATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
+..-|..+|+--.. .-||...| +-.+.-+...++-+.|..+|+..+.. +..+ ..+|..+|.-=..-|++.-+..
T Consensus 447 d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 447 DRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred CcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 77788888877666 45666543 34455566778888888888866652 2222 3567777777777788888877
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHh
Q 037510 780 LFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
+=++|.+ +.|-..+.......
T Consensus 524 Le~rf~e--~~pQen~~evF~Sr 544 (660)
T COG5107 524 LEERFRE--LVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHH--HcCcHhHHHHHHHH
Confidence 7777766 55655444444443
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.59 E-value=2.3 Score=40.71 Aligned_cols=198 Identities=19% Similarity=0.120 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTM-GLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS-TL 632 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~ 632 (806)
+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 140 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHH
Confidence 333444444444444444444444321 112233334444444445555556666665555432222 111111222 45
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHH
Q 037510 633 CRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 633 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
...|+++.|...+++........ ......+......+...++.++|...+.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 141 YELGDYEEALELYEKALELDPEL-----------------------------NELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCc-----------------------------cchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 56666666666666654321100 0011222223333555666666666666
Q ss_pred HHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 713 ALLLTGFSPD--NFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 713 ~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+..+ ..|+ ...+..+...+...+++++|...+..... ..|+ ...+..+...+...|..+++...+.+..+
T Consensus 192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666 3344 34566666666666666666666666666 2333 33344444444455566666666666554
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.57 E-value=0.16 Score=42.35 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037510 228 VTYNSLIDGYVSLGDLNGAKRVLEWTCEK---------------GISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEED 292 (806)
Q Consensus 228 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 292 (806)
.++.++|.++++.|+++....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34445555555555555555554433211 122344444444444444444444444444444444
Q ss_pred CCCCChHhHHHHHH
Q 037510 293 DVIVDEYAYGVLID 306 (806)
Q Consensus 293 ~~~~~~~~~~~li~ 306 (806)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=2 Score=41.09 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037510 167 LVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEM 218 (806)
Q Consensus 167 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 218 (806)
....|++.+|...|......... +...-..++.+|...|+.+.|..++..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455555555555555553221 2333444555555555555555555554
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=2.1 Score=41.00 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=97.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 037510 199 VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKM 278 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 278 (806)
.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..++...-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344567889999999999888764 3345667778889999999999999999887653222222222334555555555
Q ss_pred HHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCCHhHH
Q 037510 279 EEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGL-EMNLLICNSLINGYCKLGQVCEA 352 (806)
Q Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 352 (806)
.+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+++++. .-|...-..|+..+.--|..+.+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 5555555555433 22566666777788888888888877776665421 22555666677666666644433
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.28 E-value=3.4 Score=47.27 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 440 GYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC 519 (806)
Q Consensus 440 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (806)
.|.-.++.--+.|.+.+|+.++..=.+ .-...|.+....+...+.+++|.-.|+..-+. .-.+.+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 344444555566667777666532111 12234555556666667777777666655321 23356677
Q ss_pred hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc
Q 037510 520 KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD 599 (806)
Q Consensus 520 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 599 (806)
..|+|.+|+.+...+. .+...-..+-..|+..+...+++-+|-++..+.... ..-.+..|++
T Consensus 977 ~~~dWr~~l~~a~ql~----------~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLS----------EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred HhccHHHHHHHHHhhc----------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence 7788888777766541 110011112245666677777777777777665542 1223444566
Q ss_pred cCChHHHHHHHHH
Q 037510 600 AGMLNKAFKAYFD 612 (806)
Q Consensus 600 ~g~~~~A~~~~~~ 612 (806)
...+++|+++-..
T Consensus 1039 a~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1039 AKEWEEALRVASK 1051 (1265)
T ss_pred HhHHHHHHHHHHh
Confidence 6666666655443
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=2.5 Score=39.06 Aligned_cols=201 Identities=18% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 037510 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
-..+|...+++++|...+.+..+. ..-+...| .....++.|.-+.+++.+. +.-+..|+-...+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCC
Confidence 344555566677666666555431 11122111 1223345566666666543 2234456666777888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE----DDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
.+.|-..+++..+. ...-++++|+++|.+.... +....-...+..+-..+.+...+++|-
T Consensus 107 pdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 107 PDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred cchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88777777765541 2334556666666654432 001111223444555666666776665
Q ss_pred HHHHHHHHC----CCCCCh-hHHHHHHHHHHhcCCHhHHHHHHHHHhhCC---CCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 319 RVLNEMLKT----GLEMNL-LICNSLINGYCKLGQVCEAKRVLRCMGDWN---LRPDSFSFNTLVDGYCRECDMTEAFRL 390 (806)
Q Consensus 319 ~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~ 390 (806)
..+.+-... .--++. ..|.+.|-.|.-..++..|...++.-.+.+ -+-+..+...|+.+| ..|+.+++.++
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 554432211 111121 235555556666778888888887743321 233556666677665 34565555444
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.25 E-value=0.49 Score=39.97 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hcHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI--ATYNS 763 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ 763 (806)
.+-.-+....+.|++++|++.|+.+... -|-. .+--.|+.+|.+.|++++|+..+++.++. .|+. ..|-.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~hp~vdYa~ 87 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCCccHHH
Confidence 3334455667899999999999999985 3322 36778999999999999999999999994 4532 33443
Q ss_pred HHHH--HHhcCC---------------HHHHHHHHHHHHHCCCCCCH
Q 037510 764 LVSG--LCNSGE---------------LDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 764 l~~~--~~~~g~---------------~~~A~~~~~~m~~~g~~p~~ 793 (806)
...+ +.+... ..+|..-|+++++ .-|+.
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~--~yP~S 132 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR--RYPNS 132 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH--HCcCC
Confidence 4444 334333 6778888888876 45553
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.47 Score=45.60 Aligned_cols=49 Identities=6% Similarity=-0.124 Sum_probs=20.8
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMI 614 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 614 (806)
.|+..+|...++++.+. .+.|...+.-.=++|.-.|+...-...+++.+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi 164 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII 164 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence 34444444444444432 22233334434444444444444444444444
No 249
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.18 E-value=6.8 Score=43.77 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=108.0
Q ss_pred HHHHHHHhhhhCCCCCC--CHhHHHHHHHHHH-cCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHH
Q 037510 50 ASLGFFQLASKQQKFRP--NIKCYCKIVHILS-RARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFD 126 (806)
Q Consensus 50 ~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (806)
.|++-+.-+.++...+| ...++..++++|. ...++++|+..+...+..+..+.-.... -....
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k--------------~~~~~ 104 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK--------------FRCQF 104 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH--------------HHHHH
Confidence 34555555554444444 3567888999988 7899999999999887765432111000 11223
Q ss_pred HHHHHHHHcCChhhHHHHHHHhhhcCCC--cCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCC---CCCCHhHHHHH
Q 037510 127 MILKIYAQKGMLKNALHVFDNMGKYGCI--PSL--RSCNCL-LSNLVKNGEGYVALLVYEQMMRVG---IVPDVFTCSIV 198 (806)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~l 198 (806)
.+++.+.+.+... |...+++.++.--. .+. ..+..+ +..+...+++..|.+.++.+...- ..|-...+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 4566676666655 88888887654111 111 122223 222333478888998888876642 22333444444
Q ss_pred HHHHH--hcCChhHHHHHHHHHHHcCC---------CcCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 037510 199 VNAYC--KEKSMEKALDFVKEMENLGF---------ELNVVTYNSLIDGYV--SLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 199 ~~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 255 (806)
+.+.. +.+..+++.+.++++..... .|...++..+++.++ ..|+++.+...++++.+
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44433 45556677777766633211 234555666665543 56776676666655543
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.33 Score=45.72 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC
Q 037510 75 VHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCI 154 (806)
Q Consensus 75 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (806)
+--+..+|++.+|...|...++. |+.....+..+-.|..++...|++++|..+|..+.+.-++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~-----------------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKK-----------------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----------------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 33334555566666665554432 3444555666666666666666666666666666554211
Q ss_pred --cChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037510 155 --PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186 (806)
Q Consensus 155 --~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (806)
--+.++--|..+..+.|+.++|..+|+++.+.
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12344555555555666666666666665553
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=95.13 E-value=0.6 Score=47.77 Aligned_cols=87 Identities=10% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHH
Q 037510 702 GNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 702 g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
....+|.++.++..+ +.|+. .+...++.+..-.|+++.|...|+++.. +.|| ..+|....+.+.-.|+.++|.+
T Consensus 318 ~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 318 LAAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 345678888888888 66755 5888888888888999999999999999 6675 4577778888889999999999
Q ss_pred HHHHHHHCCCCCCHh
Q 037510 780 LFCKLRQKGLTPTVV 794 (806)
Q Consensus 780 ~~~~m~~~g~~p~~~ 794 (806)
.+++..+ ..|-..
T Consensus 394 ~i~~alr--LsP~~~ 406 (458)
T PRK11906 394 CIDKSLQ--LEPRRR 406 (458)
T ss_pred HHHHHhc--cCchhh
Confidence 9999776 667643
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.12 E-value=0.54 Score=49.23 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=100.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037510 560 SVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKID 639 (806)
Q Consensus 560 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 639 (806)
....-.++++++.++...-.-.. ..+....+.++.-+.+.|..+.|+++-.. +. .-.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 34445778888766664111110 11234467777778888999888876432 22 1233455788988
Q ss_pred HHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCC
Q 037510 640 EANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGF 719 (806)
Q Consensus 640 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 719 (806)
.|.++.++. ++...|..|+....++|+++-|.+.|++...
T Consensus 336 ~A~~~a~~~-------------------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--- 375 (443)
T PF04053_consen 336 IALEIAKEL-------------------------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD--- 375 (443)
T ss_dssp HHHHHCCCC-------------------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----
T ss_pred HHHHHHHhc-------------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---
Confidence 888776543 3567999999999999999999999998766
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 720 SPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 720 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
|..|.-.|.-.|+.+.-.++.+.+...| -++....++.-.|+.++..+++.+
T Consensus 376 ------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 ------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6778888899999888777777777655 234444555566777777766654
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.76 E-value=0.073 Score=34.78 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTL 729 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l 729 (806)
++..+...|...|++++|+++|+++++ ..|+.. .|..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHh
Confidence 455666666777777777777777666 556553 44333
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.76 E-value=3.6 Score=42.45 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+-..+..++-+.|+.++|++.++++.+..+.. .+..+...|+.++...+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------------------~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------------------DNLNIRENLIEALLELQA 310 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------------------chhhHHHHHHHHHHhcCC
Confidence 33456777778999999999999998754221 134467789999999999
Q ss_pred hhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC---------------HHHHHHHHHHHHHc
Q 037510 704 VTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD---------------INEAFNLRDEMLKI 752 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~ 752 (806)
+.++..++.+.-+. ..|... .|+..+--+...|+ -..|.+.+.++++.
T Consensus 311 Yad~q~lL~kYdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 311 YADVQALLAKYDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHHHHHHHhccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 99999999987552 235554 56654433333333 13466778887773
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.74 E-value=0.087 Score=34.41 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCL 163 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 163 (806)
+++..+.+.|.+.|++++|+++|++..+..+. |...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45556677777777777777777777776542 55555544
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.71 E-value=0.19 Score=46.82 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHhc-----CChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC----------------CHHHHHHH
Q 037510 687 NYVVYNIVIAGICKS-----GNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVG----------------DINEAFNL 745 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~A~~~ 745 (806)
|-.+|-..+..+... +..+--...++.|.+.|..-|..+|+.|++.+=+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 344454444444322 334444455555556566666666666665543321 11235555
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037510 746 RDEMLKINLVPNIATYNSLVSGLCNSGE 773 (806)
Q Consensus 746 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 773 (806)
+++|...|+.||..+-..|+.++.+.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 5555555555555555555555555544
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.62 E-value=0.58 Score=42.09 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHH--H
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYN--S 763 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~ 763 (806)
..+..++..|++.|+.++|.+.|.++.+....|... .+-.++......|+|..+.....++...--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 468889999999999999999999999976666654 67889999999999999999999887631121 222111 1
Q ss_pred HH--HHHHhcCCHHHHHHHHHHHH
Q 037510 764 LV--SGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 764 l~--~~~~~~g~~~~A~~~~~~m~ 785 (806)
.. -.+...|++.+|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 23456789999999887765
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.56 E-value=7.5 Score=41.22 Aligned_cols=181 Identities=15% Similarity=0.043 Sum_probs=98.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHH
Q 037510 403 VVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKG 482 (806)
Q Consensus 403 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 482 (806)
..+|..-+.--...|+.+.+.-+|++..-- +..=...|-..+......|+.+-|..++....+--.+..+.+--.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456777777777788888888887776543 1122334455555555568777777776665554332222222112222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHH---HHHHHHhcccChhhhhcCCCCCHHHHHHH
Q 037510 483 LCKMGKMTEAQKIFDKMKELGCLPNI-ITYRTLSDGYCKVGNLEEAFK---IKNLMERREILPSMEKEAIVPSIDMYNYL 558 (806)
Q Consensus 483 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 558 (806)
.-..|+++.|..+++...+.- |+. ..-..-+..-.+.|+.+.+.. ++... ... ..+..+...+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~---------~~~--~~~~~i~~~l 442 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSI---------YEG--KENNGILEKL 442 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh---------ccc--ccCcchhHHH
Confidence 334578999999998887763 443 333333455667777777763 33322 111 1111111111
Q ss_pred HH-----HHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 559 IS-----VAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC 598 (806)
Q Consensus 559 ~~-----~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 598 (806)
.. .+.-.++.+.|..++.++.+. .+++...|..++....
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 11 223356677777777777765 3445555666655444
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.53 E-value=2.7 Score=43.37 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCC
Q 037510 163 LLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 163 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
++.-.-+..+.+.-++.-.+.++ +.||..+..+++ +--......+|.+++++..+.|-. . +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----S-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----h-------hchhhh
Confidence 33334445555555555555555 345543322222 112234467777777776654310 0 000000
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHH
Q 037510 243 LNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLN 322 (806)
Q Consensus 243 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (806)
....-..++.+..+...+-..+-..+..+.-+.|+.++|++.+++|.+.............|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000111222222221223333445666667788888888887777652222233456677777777777777777777
Q ss_pred HHHHC
Q 037510 323 EMLKT 327 (806)
Q Consensus 323 ~~~~~ 327 (806)
+..+.
T Consensus 320 kYdDi 324 (539)
T PF04184_consen 320 KYDDI 324 (539)
T ss_pred Hhccc
Confidence 76543
No 260
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.52 E-value=0.039 Score=33.48 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred HHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHH
Q 037510 711 FSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAF 743 (806)
Q Consensus 711 ~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 743 (806)
|++.++ +.|+.. +|+.|+..|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 455555 566654 7777777777777777765
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=1.5 Score=42.41 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 381 ECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK 431 (806)
Q Consensus 381 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 431 (806)
+|+..+|...++++++. .+.|...+...=.+|...|+.+.-...+++++.
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip 165 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP 165 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc
Confidence 45555555555555554 233445555555555555555555555555544
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.39 E-value=2.2 Score=35.09 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=69.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037510 203 CKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 203 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 282 (806)
.-.|..++..+++.+.... .+..-||-+|--....-+-+-..++++.+-+. -|.. .+|+.....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHH
Confidence 3456677777777776653 24444555554444444444444444444331 1211 223333333
Q ss_pred HHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037510 283 NMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW 362 (806)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 362 (806)
..+-.+- .+.......+..+...|+-++-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++++.-+.
T Consensus 77 ~C~~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYAKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3332221 12334455566677777777777777777653 3556777777777777777777777777777666
Q ss_pred CC
Q 037510 363 NL 364 (806)
Q Consensus 363 ~~ 364 (806)
|+
T Consensus 150 G~ 151 (161)
T PF09205_consen 150 GL 151 (161)
T ss_dssp T-
T ss_pred ch
Confidence 63
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.38 E-value=2.6 Score=36.61 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhH-HHHH-
Q 037510 122 PTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPS-LRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFT-CSIV- 198 (806)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~l- 198 (806)
.+.|..-+. +++.++.++|+..|..+.+.|...- +-+.-.+.....+.|+...|...|+++-.....|-..- ...+
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344443333 3567788888888888877654321 12333445566677888888888888766544443221 1111
Q ss_pred -HHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037510 199 -VNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 199 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (806)
.-.+...|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 112345566666666666555444333344445555555666666666666666655
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=3.3 Score=36.02 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=93.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
+...++.++|+.-|..+.+.|.... | .-...-........|+...|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Y-----------------------------p-vLA~mr~at~~a~kgdta~AV~aF 117 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSY-----------------------------P-VLARMRAATLLAQKGDTAAAVAAF 117 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcc-----------------------------h-HHHHHHHHHHHhhcccHHHHHHHH
Confidence 4567889999999999988765421 1 111222345567889999999999
Q ss_pred HHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 712 SALLLTGFSPDNF---TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 712 ~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 788 (806)
+++-.-...|... .----...+...|-++......+-+...+-.-....-..|.-+-.+.|++..|.++|..+..-.
T Consensus 118 deia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 118 DEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 9998855455443 2223344567788888888777766544322244555788888899999999999999988765
Q ss_pred CCCCHhh
Q 037510 789 LTPTVVT 795 (806)
Q Consensus 789 ~~p~~~~ 795 (806)
..|....
T Consensus 198 ~aprnir 204 (221)
T COG4649 198 QAPRNIR 204 (221)
T ss_pred cCcHHHH
Confidence 6665544
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.21 E-value=0.1 Score=32.26 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|..|+..|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777777777777543
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.20 E-value=5 Score=37.74 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=29.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChh---HHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037510 305 IDGYCKVGKVDEAIRVLNEMLKTGLEMNLL---ICNSLINGYCKLGQVCEAKRVLRCMGD 361 (806)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~ 361 (806)
..-|.+.|.+..|..-+++|++. .+-... .+-.+..+|...|-.++|...-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34556666666666666666665 222222 233344556666666666555444433
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.16 E-value=2.8 Score=34.60 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 588 VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 588 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
......++.+...|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.++++++-+.|..
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445566777888888888888887763 3778888888889999999999999999988888753
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.07 E-value=0.91 Score=42.59 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 037510 246 AKRVLEWTCEKGISRTAVTYTTLTKGYCKQH 276 (806)
Q Consensus 246 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 276 (806)
+.+++++|..+|+.||-.+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4455555555555555555555555554444
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.07 E-value=1.4 Score=46.15 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHH
Q 037510 475 TFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDM 554 (806)
Q Consensus 475 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (806)
..+.++..+.+.|..+.|+.+..+ +.+ -.+...+.|+.+.|.++.+. .++...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a~~---------------~~~~~~ 349 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIAKE---------------LDDPEK 349 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHCCC---------------CSTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHHHh---------------cCcHHH
Confidence 355666666666666666655432 211 13344566666666654321 235556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
|..|.....+.|+++-|++.|++... +..|+-.|.-.|+.+.-.++.+.....| . ++....++.-
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~ 414 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHH
Confidence 66666666667777666666665442 3444445556666666555555555443 1 2333344445
Q ss_pred cCCHHHHHHHHHH
Q 037510 635 LGKIDEANIFLQK 647 (806)
Q Consensus 635 ~g~~~~A~~~~~~ 647 (806)
.|+.++...++.+
T Consensus 415 lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 415 LGDVEECVDLLIE 427 (443)
T ss_dssp HT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 5666666666554
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.00 E-value=4.5 Score=39.90 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhh
Q 037510 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR--L----GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSL 676 (806)
Q Consensus 603 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 676 (806)
+++.+.+++.+.+.|+.-+..+|.+..-.... . .....|..+++.|.+.++--+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44567788888888888887666553333322 2 235678899999998764321
Q ss_pred HHhhhcCCCCChHHHHHHHHHHHhcCC----hhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCC--HHHHHHHHHH
Q 037510 677 DESARSLCVPNYVVYNIVIAGICKSGN----VTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGD--INEAFNLRDE 748 (806)
Q Consensus 677 ~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~ 748 (806)
.++-.++..++.. ..++ .+.+...|+.+.+.|+..+.. ....++..+..... ..++.++++.
T Consensus 138 --------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 138 --------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred --------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 2334444444433 2222 466788888888888888764 33333333322222 4578889999
Q ss_pred HHHcCCCCChhcHHHHHH
Q 037510 749 MLKINLVPNIATYNSLVS 766 (806)
Q Consensus 749 ~~~~~~~p~~~~~~~l~~ 766 (806)
+.+.|+++....|..++-
T Consensus 208 l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHcCCccccccccHHHH
Confidence 999999988877877664
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.00 E-value=4.6 Score=36.59 Aligned_cols=183 Identities=15% Similarity=0.063 Sum_probs=96.4
Q ss_pred HHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHH
Q 037510 132 YAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKA 211 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 211 (806)
|-..|-+.-|+--|.+.....++ -+.++|.|.--+...|+++.|.+.|+...+..+.-+-...|.-| ++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 33445555666666665554322 45678888888888899999999999887755333322233222 23356888888
Q ss_pred HHHHHHHHHcCC-CcCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 212 LDFVKEMENLGF-ELNVVTYNSLIDGYVSLGDLNGAKRVL-EWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMK 289 (806)
Q Consensus 212 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 289 (806)
.+-+...-+.+. .|-...|.-++ -..-+..+|..-+ ++... .|..-|..-|-.|.- |++. ...+++++.
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 777766665532 12122222222 2333455555433 33333 344445444433321 1111 112333333
Q ss_pred hcCCCCCC-------hHhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 290 EEDDVIVD-------EYAYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 290 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
.. ...+ ..||.-+...+...|++++|..+|+-.+..
T Consensus 224 a~--a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 AD--ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hh--ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22 1111 235666666667777777777777766554
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.85 E-value=6.2 Score=37.54 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhc-CCCCCHHHHHHHHHHHHh
Q 037510 487 GKMTEAQKIFDKMKELGCL-PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKE-AIVPSIDMYNYLISVAFK 564 (806)
Q Consensus 487 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 564 (806)
+....+...+......... .....+......+...+....+...+... ... ........+......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 107 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKA---------LELELLPNLAEALLNLGLLLEA 107 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHH---------HhhhhccchHHHHHHHHHHHHH
Confidence 4445555555555544311 12455666666777777777777766654 111 233344555566666677
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHH-HHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALIS-GWCDAGMLNKAFKAYFDMIEKGF--SPNVAICSKLVSTLCRLGKIDEA 641 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 641 (806)
.+....+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 108 LGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 777778888877777643332 122222222 67788999999999988865321 12334444444556778889999
Q ss_pred HHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC
Q 037510 642 NIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSP 721 (806)
Q Consensus 642 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 721 (806)
...+.+........ ....+..+...+...++++.|...+..... ..|
T Consensus 187 ~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~ 233 (291)
T COG0457 187 LELLEKALKLNPDD-------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALE--LDP 233 (291)
T ss_pred HHHHHHHHhhCccc-------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCc
Confidence 99998887653210 245677788888888899999999999988 566
Q ss_pred C-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 722 D-NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 722 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+ ...+..+...+...|.++++...+.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 34555666666677789999999999887
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.73 E-value=2.1 Score=37.11 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHHHHHHH---HHhcCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 690 VYNIVIAG---ICKSGNVTDARRIFSALLLTGFSPDNFT-YSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 690 ~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+.+.|+.. -.+.++.+++..+++-+.- +.|.... -..-++.+...|+|.+|+.+|+++.+.+ |....-..|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 44445444 4577899999999999998 8888763 3345567889999999999999987742 4322233344
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 766 -SGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 766 -~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
.++...|+ .+-..+-+++.+.+-.|+.
T Consensus 85 A~CL~~~~D-~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 85 ALCLYALGD-PSWRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHcCC-hHHHHHHHHHHhcCCChHH
Confidence 34444444 4455556666665544443
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.73 E-value=6.2 Score=37.15 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=35.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN----FTYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
+..-|.+.|.+..|..-+++|++. -|+. .++-.+..+|.+.|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 456677778888888888888774 3332 145566677777777777766544443
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.63 E-value=0.06 Score=32.68 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=27.1
Q ss_pred HHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHH
Q 037510 746 RDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKR 779 (806)
Q Consensus 746 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 779 (806)
|+++++ +.| ++..|+.|...|...|++++|++
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 567777 567 78899999999999999999963
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.60 E-value=8.1 Score=38.07 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 229 TYNSLIDGYVSLGDLN---GAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 229 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
+...++.+|...+..+ +|.++++.+..... ..+..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555555555433 33444444433221 12334444455555556666666666666654
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.50 E-value=4.5 Score=34.84 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYC 344 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 344 (806)
++..+.+.+........++.+...+. .+....+.++..|+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 33444444444444444444444332 23334444444444
No 278
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.32 E-value=1.2 Score=39.65 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDN------FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVS 766 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 766 (806)
=+.-+.+.|++++|..-|..+++ +.|.. +.|..-+.++.+.+.|+.|++-..++++. .|. ......-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHH
Confidence 35667899999999999999998 45543 35777778899999999999999999984 442 222223345
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037510 767 GLCNSGELDRAKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 796 (806)
+|.+..++++|+.=|+++.+ ..|...-.
T Consensus 177 ayek~ek~eealeDyKki~E--~dPs~~ea 204 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE--SDPSRREA 204 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH--hCcchHHH
Confidence 78889999999999999998 67765433
No 279
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.31 E-value=4.9 Score=34.63 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=38.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 037510 338 SLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCRVG 417 (806)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 417 (806)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555444 244445555555555432 2222233221 112333344555555555
Q ss_pred CHHHHHHHHHHH
Q 037510 418 DVDEALHLWLMM 429 (806)
Q Consensus 418 ~~~~a~~~~~~~ 429 (806)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 280
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.28 E-value=0.31 Score=46.82 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG 772 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 772 (806)
-+.-|.++|.+++|++.|...+. ..| +.+++..-..+|.+...+..|..-...++..+ ..=...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999888 778 77899999999999999999988888887632 101223444444445568
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYNILID 801 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 801 (806)
+.+||.+-++...+ +.|+..-.+....
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccHHHHHHHH
Confidence 88999998888887 7888655544443
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.19 E-value=16 Score=42.23 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHH
Q 037510 240 LGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIR 319 (806)
Q Consensus 240 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (806)
.++++.|..-+.++. ...|.-.++.--+.|-+.+|+.++.-=.+. -...|.+....+...+.+++|.-
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~-----~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK-----QKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH-----HHHHHHHHHHHHHHhccccHHHH
Confidence 345666655554443 234455555556677777777765422211 12244444555566777888877
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhc--HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037510 320 VLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFS--FNTLVDGYCRECDMTEAFRLCAEMLRQ 397 (806)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~ 397 (806)
+|+..-+. ..-+.+|..+|++.+|..+..++... .+... -..|+.-+...++.-+|-++..+....
T Consensus 961 ~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 961 MYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 77654321 23466777888888888888777532 22222 245667777788888888887776653
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 398 GIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 398 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
..-.+..+|+...+++|..+.....
T Consensus 1029 --------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 --------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred --------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1234455666777788777665543
No 282
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.04 E-value=0.35 Score=42.31 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCC-----------HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037510 704 VTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGD-----------INEAFNLRDEMLKINLVPNIATYNSLVSGLCNS 771 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 771 (806)
+++|+.-|++.+. +.|+.. ++..++.+|...+. +++|.+.|+++.+ ..|+...|..-+...
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 4455555666666 778763 77777777766542 3445555555555 567777766544333
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 037510 772 GELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~ 789 (806)
.+|-++..++.++|.
T Consensus 124 ---~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HhhHHHHHHHHHHHh
Confidence 346666666655543
No 283
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.99 E-value=15 Score=39.36 Aligned_cols=160 Identities=17% Similarity=0.101 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc------chHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhH-
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLRQGIEPSV------VTYNTLLKGLCR----VGDVDEALHLWLMMLKRCVCPNEVGY- 441 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~- 441 (806)
.++....-.|+-+.+++.+.+..+.+-.-.+ -.|...+..++. ....+.|.+++..+... -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444456666666666655442111011 123333333333 34566777777777775 3444433
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC--C-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNILARG--F-YKNTITFNTMIKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSD-G 517 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 517 (806)
-.-.+.+...|+.++|++.|++..... . ......+--+...+....+|++|...+..+.+..-. +...|.-+.. +
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHH
Confidence 334456667788888888888655321 0 112233445566777889999999999999886422 2333333332 3
Q ss_pred HHhcCCh-------HHHHHHHHHHH
Q 037510 518 YCKVGNL-------EEAFKIKNLME 535 (806)
Q Consensus 518 ~~~~g~~-------~~A~~~~~~~~ 535 (806)
+...|+. ++|.+++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4467777 78888887763
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.90 E-value=0.22 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.80 E-value=0.91 Score=43.64 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhcHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIATYN 762 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 762 (806)
.++..++..+...|+.+.+.+.++++.. ..| +...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+.+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3777888888888888888888888888 566 446888888888888888888888888765 47777666555
Q ss_pred HHHHH
Q 037510 763 SLVSG 767 (806)
Q Consensus 763 ~l~~~ 767 (806)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 286
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.59 E-value=9.1 Score=35.91 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=102.3
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChh---hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCC--CCHhHHHHHHHHHHhc
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLR---SCNCLLSNLVKNGEGYVALLVYEQMMRV---GIV--PDVFTCSIVVNAYCKE 205 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~ 205 (806)
+...+++|+.-|+++.+........ +...++....+.|++++....|.+++.. .+. -+..+.|.++.-....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888999999888764443433 5556788888999999988888888652 111 1233455555555545
Q ss_pred CChhHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CC-------hhhHHHHH
Q 037510 206 KSMEKALDFVKEMENL----G-FELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGIS----RT-------AVTYTTLT 269 (806)
Q Consensus 206 g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~-------~~~~~~li 269 (806)
.+.+.-..+++.-+.. . -..--.|-+-|...|...|++....+++.++...-.. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5544444444332211 0 0000112344566666777777777777666543110 01 23455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHH----HHHhcCChHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLID----GYCKVGKVDEAIRVL 321 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~ 321 (806)
..|..+.+-.+-..+|++........|.+.....+-. ...+.|++++|..-|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 6666666666666666665554344444433332211 223456666665433
No 287
>PRK09687 putative lyase; Provisional
Probab=92.56 E-value=11 Score=36.93 Aligned_cols=235 Identities=11% Similarity=0.005 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCH----hHHHHHHHHHHHC
Q 037510 506 PNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSREL----TSLVDLLAEMQTM 581 (806)
Q Consensus 506 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~ 581 (806)
+|.......+.++...|..+....+.. + -..++...-...+.++.+.|+. +++...+..+...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~-l------------l~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIE-L------------CSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHH-H------------HhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 455555556666666654333222222 2 1133455555566666666653 4677777776444
Q ss_pred CCCCCHhHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037510 582 GLYPNIVTYGALISGWCDAGM-----LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPD 656 (806)
Q Consensus 582 g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 656 (806)
.|+...-...+.++...+. ...+...+..+.. .++..+-...+.++.+.|+ ++|...+-.+.+.
T Consensus 102 --D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----- 170 (280)
T PRK09687 102 --DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----- 170 (280)
T ss_pred --CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----
Confidence 4566666566666655442 1234444444433 3466677777888888776 5666776666653
Q ss_pred hhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC-ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 037510 657 LKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG-NVTDARRIFSALLLTGFSPDNFTYSTLIHGYAA 735 (806)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 735 (806)
+|..+-...+.++...+ ...++...+..++. .++..+-...+.++.+
T Consensus 171 -----------------------------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 171 -----------------------------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLAL 218 (280)
T ss_pred -----------------------------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHc
Confidence 23334444555555543 24567777777774 5677777788888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
.|+ ..|+..+-+.++.+ + .....+.++...|. ++|...+..+.+ -.||..+-...+.+|.+
T Consensus 219 ~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~--~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 219 RKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY--KFDDNEIITKAIDKLKR 279 (280)
T ss_pred cCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh--hCCChhHHHHHHHHHhc
Confidence 888 67888888887743 2 24567788999999 479999999887 46788888888887764
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.53 E-value=0.26 Score=29.84 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|..++.+|...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566777777777777777777777777
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.29 E-value=7.1 Score=33.92 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHcCChhhHHHHHHHhhhc
Q 037510 132 YAQKGMLKNALHVFDNMGKY 151 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~ 151 (806)
+..+|++.+|+.+|+.+...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44555566666665555443
No 290
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.17 E-value=1.7 Score=38.22 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHhhhc
Q 037510 740 NEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSGE-----------LDRAKRLFCKLRQKGLTPTVVTYNILIDGYCK 805 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 805 (806)
++|+.-|++++. +.|+ ..++..++.+|...|. +++|...|++..+ ..|+...|+.-++...|
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHh
Confidence 455555666665 4553 3455556655553332 3445555555554 56766666666655443
No 291
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=21 Score=39.07 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVD 668 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~ 668 (806)
+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.++...+++++-.++-+...
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------------- 742 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------------- 742 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------------
Confidence 34444555667788888877665553 5677777777788888888888776665543
Q ss_pred HHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 669 AQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDE 748 (806)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 748 (806)
.+.-|.-...+|.++|+.++|..++-+... . .-...+|.+.|++.+|.++--+
T Consensus 743 ------------------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ------------------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ------------------CCCCchhHHHHHHhcccHHHHhhhhhccCC------h---HHHHHHHHHhccHHHHHHHHHH
Confidence 122344467788888888888887765422 1 1466777888888888776544
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.15 E-value=8.2 Score=34.57 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 594 ISGWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 594 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
...+...|++++|...++..+......+ ..+-..|.......|.+|+|+..++.....++.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~---------------- 159 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA---------------- 159 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----------------
Confidence 4457788899999888888775311111 1222345566777888888888888776655432
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG 718 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 718 (806)
.....-++.+...|+.++|..-|++.++.+
T Consensus 160 -----------------~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 160 -----------------IVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -----------------HHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 234455778888888888888888888854
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.74 E-value=0.3 Score=29.47 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|..++.+|...|++++|++.|+++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.71 E-value=1.7 Score=41.77 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHhHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMR-----VGIVPDVFTCS 196 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~~~~~~~~ 196 (806)
.++..++..+...|+++.+.+.++.+....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34556666666677777777777776666543 566667777777777777777766666654 24555444433
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.67 E-value=0.34 Score=29.19 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
.|..++..+...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 678899999999999999999999999 6776
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.50 E-value=28 Score=39.14 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=12.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
.|+......|+.++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445555555555555555543
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.46 E-value=4.7 Score=34.28 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=61.9
Q ss_pred HHHHHHHHH---HhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHH
Q 037510 690 VYNIVIAGI---CKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSL 764 (806)
Q Consensus 690 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 764 (806)
+.+.|+... ...++++++..+++.|.- +.|+.. .-..-++.+...|+|.+|+.+|++..+.+ +. +..--.+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~ 84 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCchHHHHHH
Confidence 444444433 357899999999999998 788775 33345567889999999999999998743 22 2222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
..++.-.|+ ..=..+-.++.+.|-.|+.
T Consensus 85 A~CL~al~D-p~Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 85 ALCLNAKGD-AEWHVHADEVLARDADADA 112 (153)
T ss_pred HHHHHhcCC-hHHHHHHHHHHHhCCCHhH
Confidence 344444454 2333344445554444443
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.44 E-value=0.38 Score=29.63 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+|+.|+..|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999664
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.33 E-value=16 Score=36.02 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=91.6
Q ss_pred HHcCChhhHHHHHHHhhhcCCCcChh-------hHHHHHHHHHHcC-ChHHHHHHHHHHHHC--------CCCCCH----
Q 037510 133 AQKGMLKNALHVFDNMGKYGCIPSLR-------SCNCLLSNLVKNG-EGYVALLVYEQMMRV--------GIVPDV---- 192 (806)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~-~~~~A~~~~~~m~~~--------~~~~~~---- 192 (806)
.++|+++.|...+.+........++. .+..........+ +++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 36788899999988877643112222 2233344445566 888888777765443 123333
Q ss_pred -hHHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037510 193 -FTCSIVVNAYCKEKSME---KALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 193 -~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
.++..++.++...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+++.+.+.+|...-. .....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 35667778887777654 5666666665442 22345555566777778999999999999987521 123444444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHh
Q 037510 269 TKGY---CKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 269 i~~~---~~~g~~~~a~~~~~~~~~ 290 (806)
+..+ .... ...+...+..+..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLL 185 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHH
Confidence 4444 3333 3344444444443
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.06 E-value=12 Score=34.09 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 037510 548 IVPS-IDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKG 617 (806)
Q Consensus 548 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 617 (806)
+.|+ +.+||.|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+.+....+
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC
Confidence 4454 5778888888888899999999998888763222222222222 2345688888887777777653
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.71 E-value=19 Score=35.70 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHhcC
Q 037510 245 GAKRVLEWTCEKGISRTAVTYTTLTKGYCK--Q----HKMEEAENMLRRMKEED 292 (806)
Q Consensus 245 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~ 292 (806)
+...+++.+.+.|+..+..+|-+..-.... . .....|..+|+.|++..
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 344556666666665555444332222111 1 12345566666666653
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.59 E-value=33 Score=38.42 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHHHHHcCC-CCC-------hhhHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCcHHHH
Q 037510 415 RVGDVDEALHLWLMMLKRCV-CPN-------EVGYCTLLDILFNKGDFYGAVKLWN--------NILARGFYKNTITF 476 (806)
Q Consensus 415 ~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~ 476 (806)
-.+++..|......+..... .|+ ...+....-.+...|+.+.|...|. .....+...+..++
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 36788888888888876421 111 2222223333445789999999997 44455544444444
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.29 E-value=2.9 Score=37.22 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=55.6
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHH
Q 037510 597 WCDAGMLNKAFKAYFDMIEKGFSPN-----VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQK 671 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 671 (806)
+...|++++|..-|..+++. +++. .+.|..-..++.++++++.|+.-..+.++.++.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt----------------- 166 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT----------------- 166 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-----------------
Confidence 45667777777777777764 2322 334444455666777777777777777766532
Q ss_pred HHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 037510 672 IAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF 724 (806)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 724 (806)
...++---..+|-+...+++|++-|.++++ ..|...
T Consensus 167 ---------------y~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 167 ---------------YEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred ---------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchH
Confidence 111222224456666677777777777777 556543
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.97 E-value=3 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCc--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCIP--SLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
..+..+...|.+.|+.++|++.|.++......+ -...+-.+++.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346677788888888888888888877653222 244667777777778888777777666554
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.90 E-value=13 Score=32.75 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=9.9
Q ss_pred HcCCCcCHHHHHHHHHHHHhCCC
Q 037510 220 NLGFELNVVTYNSLIDGYVSLGD 242 (806)
Q Consensus 220 ~~~~~~~~~~~~~li~~~~~~g~ 242 (806)
+.+++|+...+..++..+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.74 E-value=2.6 Score=40.87 Aligned_cols=93 Identities=19% Similarity=0.089 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
++-|.++|++++|+..+.+.+...+ -|++++..-..+|.+..++..|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P--------------------------------~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP--------------------------------HNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC--------------------------------CCccchhhHHHHHHHHHHHHHHH
Confidence 3558899999999999998876642 27788888888999999999888
Q ss_pred HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 709 RIFSALLLTGFSPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
.-...++.. .-.- -+|.--+.+-...|+.++|.+-++..++ ++|+
T Consensus 152 ~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 152 EDCEAAIAL--DKLYVKAYSRRMQARESLGNNMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HhHHHHHHh--hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHh--hCcc
Confidence 877777662 1111 2566666666667888888888888887 6775
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.66 E-value=40 Score=37.96 Aligned_cols=234 Identities=15% Similarity=0.055 Sum_probs=125.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCH---HHHHHHH-HHHHhcCCHhHHHHHHHHHHHC----CCCCCHh
Q 037510 517 GYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSI---DMYNYLI-SVAFKSRELTSLVDLLAEMQTM----GLYPNIV 588 (806)
Q Consensus 517 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----g~~p~~~ 588 (806)
......++++|..+..++...- ...+..+.. ..++.+- ......|+++.|.++.+..... -..+...
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l-----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFL-----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHh-----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3445678888888888773321 111112221 2233332 2344578889999888877653 1233455
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHhhCCCCCChhhhh
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV-----STLCRLGK--IDEANIFLQKMVDFDFVPDLKYMA 661 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~ 661 (806)
.+..+..+..-.|++++|..+..+..+..-..+...+..+. ..+..+|+ ..+....+.........-
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q------ 572 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ------ 572 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh------
Confidence 66677777778899999998888777643233444333322 23456673 223333333332221100
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCC--CCCCH--H--hHHHHHHHHHh
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTG--FSPDN--F--TYSTLIHGYAA 735 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~--~--~~~~l~~~~~~ 735 (806)
.....+-..+...+..++.+ ++.+..-.....+.| ..|.. . .+..|+.....
T Consensus 573 -------------------~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 573 -------------------KPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred -------------------cccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 00000112234444555544 444444444433332 22332 2 33478888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhc-H---HHHHHH--HHhcCCHHHHHHHHHH
Q 037510 736 VGDINEAFNLRDEMLKINLVPNIAT-Y---NSLVSG--LCNSGELDRAKRLFCK 783 (806)
Q Consensus 736 ~g~~~~A~~~~~~~~~~~~~p~~~~-~---~~l~~~--~~~~g~~~~A~~~~~~ 783 (806)
.|+.++|...+.++......+.... | ...+.. -...|+.++|..+..+
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 631 RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999999999999987433332222 1 222222 2267888888887766
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.41 E-value=15 Score=32.51 Aligned_cols=101 Identities=6% Similarity=-0.023 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037510 178 LVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKG 257 (806)
Q Consensus 178 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 257 (806)
+....+.+.++.|+...+..++..+.+.|++....++ ...++-+|.......+-. -.+....+.++--.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs--~~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLS--LGNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHH--hHccChHHHHHHHHHHHH-
Confidence 3444445556666666777777777776665443333 333333333322222211 112233444444444432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 258 ISRTAVTYTTLTKGYCKQHKMEEAENMLRRM 288 (806)
Q Consensus 258 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 288 (806)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1114555666677777777777776664
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.64 E-value=18 Score=32.55 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=65.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
+...+...|++++|...++..+.. .-|.. +--.|.......|.+++|+.+++.....+.. ......-+++|.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 456677889999999999888762 22221 2334667788889999999998887664322 222344567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 037510 770 NSGELDRAKRLFCKLRQKG 788 (806)
Q Consensus 770 ~~g~~~~A~~~~~~m~~~g 788 (806)
..|+.++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 9999999999999988865
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.47 E-value=0.77 Score=27.65 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
|..++..|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555444
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=5.3 Score=42.13 Aligned_cols=150 Identities=20% Similarity=0.123 Sum_probs=99.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHH
Q 037510 239 SLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAI 318 (806)
Q Consensus 239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 318 (806)
-.|+++.|..++..+.+ ...+.+++.+-++|-.++|+++- +|..- -.....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHH
Confidence 45777777776655442 24456677777888888877642 23221 123345678888888
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037510 319 RVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQG 398 (806)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 398 (806)
++..+.. +..-|..|.+...+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 8776543 567788999999999999999998876554 4566666777777766666666666555
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 399 IEPSVVTYNTLLKGLCRVGDVDEALHLWLMM 429 (806)
Q Consensus 399 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 429 (806)
.. |...-++...|+++++.+++..-
T Consensus 723 ~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 32 33344566778888887776553
No 312
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.61 E-value=24 Score=32.76 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHc--CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 601 GMLNKAFKAYFDMIEK--GFSPNVA---ICSKLVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 601 g~~~~A~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
.++++|+..|++.-+. |-..+.. .+..+..--...+++.+|+.+|+++......
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666666542 2122222 2222233334678899999999988766443
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.36 E-value=1.2 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 724 FTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 724 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.+++.|+..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777777777777777777777665
No 314
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.24 E-value=55 Score=36.60 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQ 275 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 275 (806)
+|-.+.|+|++++|.++..+.... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 455677999999999988655543 345566777788888765
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.20 E-value=52 Score=36.28 Aligned_cols=249 Identities=16% Similarity=0.042 Sum_probs=130.7
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcccChhhhhcCCCCCH
Q 037510 485 KMGKMTEAQKIFDKMKE-------LGCLPNIITYRTLSDGYCKVG-----NLEEAFKIKNLMERREILPSMEKEAIVPSI 552 (806)
Q Consensus 485 ~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (806)
...+.+.|..+++.+.+ .| +......+..+|.+.. +.+.|..++... ...+. |+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a---------A~~g~-~~a 327 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA---------AELGN-PDA 327 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHH---------HhcCC-chH
Confidence 34456666666666654 44 3334555666666543 566788888766 33332 222
Q ss_pred HHHHHHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHH--HccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037510 553 DMYNYLISVAFK---SRELTSLVDLLAEMQTMGLYPNIVTYGALISGW--CDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627 (806)
Q Consensus 553 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 627 (806)
... +...+.. ..+...|.++|....+.|.. ....+..+.... .-..+...|..++.+..+.| .|...--..
T Consensus 328 ~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~ 403 (552)
T KOG1550|consen 328 QYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLG 403 (552)
T ss_pred HHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHH
Confidence 222 2222222 24577899999998888732 222222222111 12346788999999998887 333222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHH--HHHH--hcCC
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVI--AGIC--KSGN 703 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~--~~g~ 703 (806)
.+..+.. +.++.+...+..+...+...... +...+.... .... ...+
T Consensus 404 ~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~----------------------------~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 404 AFYEYGV-GRYDTALALYLYLAELGYEVAQS----------------------------NAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHcc-ccccHHHHHHHHHHHhhhhHHhh----------------------------HHHHHHHhccccccccccccc
Confidence 3333444 77777777776666655331100 000000000 0001 1224
Q ss_pred hhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH----hcCCHH
Q 037510 704 VTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV----GDINEAFNLRDEMLKINLVPNIATYNSLVSGLC----NSGELD 775 (806)
Q Consensus 704 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~ 775 (806)
...+...+.+....| +......|.+.|..- .+.+.|...|..+...+ ......|...+. -.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 556666666665543 344555555555443 35777888888777654 333333333322 334 68
Q ss_pred HHHHHHHHHHHC
Q 037510 776 RAKRLFCKLRQK 787 (806)
Q Consensus 776 ~A~~~~~~m~~~ 787 (806)
.|.++++...+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 888888887763
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.81 E-value=40 Score=34.59 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh
Q 037510 621 NVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK 700 (806)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 700 (806)
...++..++..+.+.|.++.|...+.++...+..+. ...+.+.-.-+..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~----------------------------~~~~~v~~e~akllw~ 196 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE----------------------------SLLPRVFLEYAKLLWA 196 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc----------------------------CCCcchHHHHHHHHHH
Confidence 455677777778888888888888888776542211 0022233334556667
Q ss_pred cCChhhHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLL 716 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~ 716 (806)
.|+..+|+..+++.++
T Consensus 197 ~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 197 QGEQEEAIQKLRELLK 212 (352)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777666
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=3.1 Score=39.91 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=63.7
Q ss_pred hccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh-----hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037510 116 KEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR-----SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVP 190 (806)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 190 (806)
++.+.+..+.+.++..-....++++++..+-++... |+.. +-...++.+ -.=++++++.++..-++.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 344555555566666666677788888877766643 2111 111222222 2335667777777777777778
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037510 191 DVFTCSIVVNAYCKEKSMEKALDFVKEMENL 221 (806)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 221 (806)
|..+++.+++.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888877777777666543
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.56 E-value=1.4 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
|..+|...|+.+.|.++++++...|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45556666666666666666555433
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.30 E-value=0.95 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCC
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPD 722 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 722 (806)
+|..++..|...|++++|.+.|++..+ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 678899999999999999999999998 5564
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.19 E-value=62 Score=36.18 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhc
Q 037510 262 AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKV 311 (806)
Q Consensus 262 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 311 (806)
...| .+|-.+.++|++++|.++.....+. .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 3345 4566677889999998888666554 445556777777777764
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.06 E-value=10 Score=40.08 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 689 VVYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 689 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
.-|..|.++....|++..|.+.|.....
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3455555555555555555555555443
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.94 E-value=48 Score=34.68 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=104.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037510 156 SLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLID 235 (806)
Q Consensus 156 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 235 (806)
|-...-+++..+..+.+++-...+..+|+..| -+-..|..++.+|... .-+.-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445556666666666677777777777643 4555666666666665 445566677766665432 4444444555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC--C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHh
Q 037510 236 GYVSLGDLNGAKRVLEWTCEKGISR--T---AVTYTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCK 310 (806)
Q Consensus 236 ~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 310 (806)
.|-+ ++...+...|.++..+=++. + -..|.-|...- ..+.+..+.+...+....|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 66666666666665542211 0 12344333321 245566666666666554444445556666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 037510 311 VGKVDEAIRVLNEMLKTGLEMNLLICNSLINGY 343 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 343 (806)
..++.+|++++....+..-+ |......++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 78888888888877776433 555555555544
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.29 E-value=1.6 Score=27.74 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 759 ATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788999999999999999999999764
No 324
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.29 E-value=9 Score=36.98 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHH
Q 037510 313 KVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCM 359 (806)
Q Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 359 (806)
+.++++.++..=+.-|+-||-.+++.+|+.+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555544444443
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.14 E-value=66 Score=35.50 Aligned_cols=113 Identities=15% Similarity=0.051 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhhcCCCcChhhHHHHHHHH-----HHcCChHHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHHhc
Q 037510 138 LKNALHVFDNMGKYGCIPSLRSCNCLLSNL-----VKNGEGYVALLVYEQMMR-------VGIVPDVFTCSIVVNAYCKE 205 (806)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~A~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~ 205 (806)
..+|.++++...+.| ++.....+...+ ....+.+.|+..|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666654 333333333222 244566667777766655 33 222344445555443
Q ss_pred C-----ChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcC
Q 037510 206 K-----SMEKALDFVKEMENLGFELNVVTYNSLIDGYVS-LGDLNGAKRVLEWTCEKG 257 (806)
Q Consensus 206 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~ 257 (806)
. +.+.|..++......|. |+....-..+..... ..+...|.++|......|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 2 44556666666666552 333322222221111 234556666666666655
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.02 E-value=71 Score=35.83 Aligned_cols=54 Identities=13% Similarity=0.019 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCCh
Q 037510 119 AFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEG 173 (806)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 173 (806)
+.+...-.....+....|+.++|....+.+-..|. ..+..|+.++..+.+.|..
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 44555555666666667776666666665544443 2456666666666655554
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=84.85 E-value=12 Score=31.21 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
|.-++.+.|++++++++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444
No 328
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.85 E-value=44 Score=33.23 Aligned_cols=190 Identities=12% Similarity=0.023 Sum_probs=119.7
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC----DAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR----L 635 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 635 (806)
..+++..+...+......+ +......+...|. ...+..+|.+.|..+.+.| .......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 3455666666666666533 2233333333333 3346788999999887766 33334445555554 3
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhc-------CChhhHH
Q 037510 636 GKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKS-------GNVTDAR 708 (806)
Q Consensus 636 g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~A~ 708 (806)
.+..+|..+++++.+.|..+- ..+...+...|..- .+...|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a-------------------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~ 175 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEA-------------------------------ALAMYRLGLAYLSGLQALAVAYDDKKAL 175 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhH-------------------------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence 488999999999999875431 11233344443332 1234799
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC------------
Q 037510 709 RIFSALLLTGFSPDNFTYSTLIHGYAA----VGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSG------------ 772 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------ 772 (806)
..|.++...+ +......|+..|.. ..+.++|...|+++.+.|. ......+. .+...|
T Consensus 176 ~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 176 YLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccc
Confidence 9999988865 44444555555533 3488999999999999774 33333344 555555
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 773 ---ELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 773 ---~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
+...|..++......|.........
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 249 KEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 8888999999998887777666555
No 329
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=21 Score=33.23 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=78.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHH
Q 037510 632 LCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIF 711 (806)
Q Consensus 632 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 711 (806)
|....+++.|+..+-+.+...+. .+.-|..-+-++.+..+++.+..--
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~--------------------------------~~~Y~tnralchlk~~~~~~v~~dc 67 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPT--------------------------------VASYYTNRALCHLKLKHWEPVEEDC 67 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCC--------------------------------cchhhhhHHHHHHHhhhhhhhhhhH
Confidence 44456677777777777665432 2234566777888888899888888
Q ss_pred HHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037510 712 SALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK----INLVPNIATYNSLVSGLCNSGELDRAKRL 780 (806)
Q Consensus 712 ~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 780 (806)
.+.++ +.|+.+ ....++.+......+++|+..+.++.+ +.+.+-..+...|..+=.+.=...++.++
T Consensus 68 rralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri 139 (284)
T KOG4642|consen 68 RRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRI 139 (284)
T ss_pred HHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHH
Confidence 88888 889887 666788888888999999999999865 23444444555555554433334444443
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.92 E-value=29 Score=29.72 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHcCChhhHHHHHHHhhhc
Q 037510 132 YAQKGMLKNALHVFDNMGKY 151 (806)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~ 151 (806)
+..+|++++|+.+|+.+...
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 45566677777776666654
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.06 E-value=1.4 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
++.++.+.|++++|.++++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444555555555554443
No 332
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.66 E-value=12 Score=34.72 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=80.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCC
Q 037510 696 AGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA-TYNSLVSGLCNSGE 773 (806)
Q Consensus 696 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 773 (806)
..|....++..|+..|.+.+. +.|+.. -|..-+-.|.+..+|+.+..-..++++ +.||.+ .-..|..++.....
T Consensus 18 nk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcc
Confidence 355667789999999999998 889985 566778888899999999999999998 677654 44567778888888
Q ss_pred HHHHHHHHHHHH----HCCCCCCHhhHHHHHHh
Q 037510 774 LDRAKRLFCKLR----QKGLTPTVVTYNILIDG 802 (806)
Q Consensus 774 ~~~A~~~~~~m~----~~g~~p~~~~~~~li~~ 802 (806)
+++|+..+.+.. ++.+.|....++.|..+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999999988863 44566666666666544
No 333
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.61 E-value=14 Score=34.48 Aligned_cols=95 Identities=18% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHhcCChhhHHHHHHHHHHC----CCCCCHH--hHHHHHHHHHhcCCHH-------HHHHHHHHHHHcCCCC----C-hh
Q 037510 698 ICKSGNVTDARRIFSALLLT----GFSPDNF--TYSTLIHGYAAVGDIN-------EAFNLRDEMLKINLVP----N-IA 759 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~----g~~p~~~--~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p----~-~~ 759 (806)
+.....+++|++.|.-++-. +..|... .+--++|.|...|+.+ .|.+.|+++.+..-.| + ..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 34445567777766654421 3344432 6777889999998844 4666666666532222 2 23
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037510 760 TYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 760 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 792 (806)
....++....+.|+.++|.++|.++...+-.+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 444555677799999999999999997544433
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.60 E-value=4 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=15.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 764 LVSGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 764 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
+.-++.+.|++++|.++.+.+.+ +.|+......|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 33445555555555555555555 45554444333
No 335
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.07 E-value=59 Score=31.94 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHC----CCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hc
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLT----GFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI----AT 760 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~ 760 (806)
.+.....-||+.|+.+.|.+.+.+-.++ |..-|.+ +.--|+-.|....-+.+-++-.+.+.+.|-.-+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 5566778899999999999998876654 7777876 3444555666666677777788888887755433 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
|..+- +....++.+|-.+|-+..
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 43331 334567888888877754
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.74 E-value=1.9 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444445555555555555444
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.71 E-value=1e+02 Score=34.41 Aligned_cols=105 Identities=8% Similarity=-0.028 Sum_probs=58.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC
Q 037510 75 VHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCI 154 (806)
Q Consensus 75 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 154 (806)
++.+.+.+.+++|+.+.....+..+ . .....+-...+..+.-.|++++|-...-.|..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~----~--------------~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g---- 420 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEE----R--------------FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG---- 420 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcc----c--------------cchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----
Confidence 6677788888888776655433210 0 01233455667777778888888888777775
Q ss_pred cChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 037510 155 PSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCK 204 (806)
Q Consensus 155 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 204 (806)
.+...|..-+..+...+.......+ +.......+...|..++..+..
T Consensus 421 n~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 421 NNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 2555555555555544443322222 1111112344566666666654
No 338
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.39 E-value=1.1e+02 Score=34.51 Aligned_cols=117 Identities=9% Similarity=-0.089 Sum_probs=61.8
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--hhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHH
Q 037510 311 VGKVDEAIRVLNEMLKTG-LEMN--LLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEA 387 (806)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 387 (806)
..+.+.|..++....... ..+. ..+...+.......+...+|...++...... .+.....--+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664432 2211 1223333333333323556666666544322 2333344445555577777777
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 388 FRLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMML 430 (806)
Q Consensus 388 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 430 (806)
...+..|....- -...-.--+.+++...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777644321 122333445666666777777777777763
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.37 E-value=2.4 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 037510 762 NSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~ 782 (806)
..+...+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555555555555443
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.16 E-value=20 Score=32.59 Aligned_cols=80 Identities=19% Similarity=-0.009 Sum_probs=58.4
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhcHHHHHHHHHhcCCHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKI---NLVPNIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 775 (806)
...-.-++|...|-++...+.--+......|+ .|....|.++|+.++-++++. +-.+|+..+..|+..+.+.|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33434567888888877765444444444454 445567899999999999973 33668899999999999999999
Q ss_pred HHHH
Q 037510 776 RAKR 779 (806)
Q Consensus 776 ~A~~ 779 (806)
.|--
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8854
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.89 E-value=9.4 Score=34.78 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+.-+..+.+.+.+++|+...++-.+ .+|... +-..|+..+|-.|+|++|..-++-+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445566667777777777776666 456543 566677777777777777766655544
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.45 E-value=29 Score=27.42 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChh--hHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 037510 124 VFDMILKIYAQKGMLK--NALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVV 199 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 199 (806)
.|+.--..|......+ +..+-+..+...+..|++....+.+.++.+-+++..|+.+|+-+... +.+....|..++
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 3444444444443333 45556666666667777777777777777777777777777766543 222222555444
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.22 E-value=17 Score=33.03 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHHHhcCCHHH
Q 037510 261 TAVTYTTLTKGYCKQHKMEE 280 (806)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~ 280 (806)
|+..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33344444444444444333
No 344
>PRK09687 putative lyase; Provisional
Probab=79.16 E-value=68 Score=31.56 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
..+.++...|.. +|+..+.++.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444444443 45555555544
No 345
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.30 E-value=3.1 Score=40.62 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=84.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHH
Q 037510 634 RLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSA 713 (806)
Q Consensus 634 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 713 (806)
..|.+++|++.|-..+... ++....|..-..++.+.++...|+.-+..
T Consensus 126 n~G~~~~ai~~~t~ai~ln--------------------------------p~~a~l~~kr~sv~lkl~kp~~airD~d~ 173 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--------------------------------PPLAILYAKRASVFLKLKKPNAAIRDCDF 173 (377)
T ss_pred cCcchhhhhcccccccccC--------------------------------CchhhhcccccceeeeccCCchhhhhhhh
Confidence 5677888888888877764 24556666777888999999999999999
Q ss_pred HHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 714 LLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 714 ~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
.++ +.||.. .|-.-..+..-.|+|++|...+..+.+.++.+... ..|-...-+.+..++-...+++.
T Consensus 174 A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 174 AIE--INPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred hhc--cCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHH
Confidence 999 889985 67777778888999999999999999966555332 23334444555544444444443
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.94 E-value=16 Score=33.32 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHh
Q 037510 726 YSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQK--GLTPTVVTYNILIDG 802 (806)
Q Consensus 726 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~ 802 (806)
.+.-+..+.+.+...+|+...+.=++. +| |...-..|+.-||-.|++++|..-++-.-+. ...+....|+.+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566778889999999999988874 46 6677788899999999999999888776541 345557888888875
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.92 E-value=1.5 Score=37.97 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=52.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCC
Q 037510 304 LIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLINGYCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECD 383 (806)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 383 (806)
++..+.+.+.++.....++.+...+...+....+.++..|++.++.++...+++.. +..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666667777777777777777665566777788888888877767777666511 11333445566666666
Q ss_pred HHHHHHHHHHH
Q 037510 384 MTEAFRLCAEM 394 (806)
Q Consensus 384 ~~~a~~~~~~m 394 (806)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.85 E-value=12 Score=35.85 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSP-DNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+++.....|..+|.+.+|.++-+..+. +.| +...|-.|+..+...||--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444455566666666666666666666 444 334556666666666666666666666543
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.35 E-value=1.8 Score=37.57 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=33.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRD 747 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 747 (806)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 455666667777777777777764433445566677777777766666666655
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.22 E-value=5.2 Score=41.12 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=78.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHHCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcC
Q 037510 695 IAGICKSGNVTDARRIFSALLLTGFSPDNFTY-STLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNSG 772 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 772 (806)
+.-+.+.+.++.|+.++.++++ +.|+.+.| ..-..++.+.+++..|+.=+.++++ +.|+ ...|.-=+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 3455677889999999999999 88987644 4444788899999999999988888 4453 234444445666778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
++.+|+..|+.... +.|+..-....++-|.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 88888888888877 8898888877777654
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.20 E-value=6.6 Score=29.13 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=26.0
Q ss_pred hcCChhhHHHHHHHHHHCCCCC-CHH-hHHHHHHHHHhcCCHHHHHHH
Q 037510 700 KSGNVTDARRIFSALLLTGFSP-DNF-TYSTLIHGYAAVGDINEAFNL 745 (806)
Q Consensus 700 ~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~ 745 (806)
...+.++|+..|++.++.-..| +.. ++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666642222 222 556666666666666665554
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.13 E-value=4 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCChhhHHHHHH
Q 037510 126 DMILKIYAQKGMLKNALHVFD 146 (806)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~ 146 (806)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.12 E-value=20 Score=27.93 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVS 630 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 630 (806)
++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-...+ +..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 56666777777788999999999999999999999999999877743 1224445665554
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.05 E-value=1.1e+02 Score=32.27 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=122.4
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037510 190 PDVFTCSIVVNAYCKEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLT 269 (806)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 269 (806)
.|....-.++..+.......-...+..+|...| .+-..|..++.+|... ..+.-..+|+++.+..+ .|++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 355566778888888888888999999999875 5778899999999988 56778889998888765 3555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCC------hHhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhHHHHHHHH
Q 037510 270 KGYCKQHKMEEAENMLRRMKEEDDVIVD------EYAYGVLIDGYCKVGKVDEAIRVLNEMLKT-GLEMNLLICNSLING 342 (806)
Q Consensus 270 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 342 (806)
..|-+ ++.+.+...|.++... +.|. ...|..+...- ..+.+..+.+...+.+. |...-...+.-+-.-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 65555 8888888888887764 2221 12344444321 34566666666666543 333344556666677
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCCChhcHHHHHHH
Q 037510 343 YCKLGQVCEAKRVLRCMGDWNLRPDSFSFNTLVDG 377 (806)
Q Consensus 343 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 377 (806)
|....++.+|++++..+.+.+ ..|..+-..++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 888889999999999887764 4444444444443
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.84 E-value=80 Score=30.59 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQ-----KGLTPTVVTYN 797 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 797 (806)
+++.....|..+|.+.+|+++.++.+. +.| +...+-.|+..|...|+--+|.+-++++.+ -|+.-|...+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 345677889999999999999999998 455 778888999999999999999998888753 38877766554
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.40 E-value=39 Score=26.75 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037510 211 ALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 255 (806)
..+-++.+....+-|+..+..+.+.+|.+.+|+..|.++|+.++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555554443
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=1.5e+02 Score=33.23 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 037510 230 YNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHK 277 (806)
Q Consensus 230 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 277 (806)
....|..+.-.|++++|-.+.-.|.. .+..-|.-.+..+...++
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 44444445555555555555555544 234444444444444443
No 358
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.95 E-value=1.1e+02 Score=31.58 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=29.6
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhh
Q 037510 111 LVRAYKEFAFSPTVFDMILKIYAQKGMLKNALHVFDNMGK 150 (806)
Q Consensus 111 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (806)
++......+...+++..+...+..+|+.+.|.++.++..-
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344456777788888888888888888888888776653
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.66 E-value=5.1 Score=22.88 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLL 716 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 716 (806)
+|..++..+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344455555555555555555555544
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.85 E-value=6.9 Score=29.05 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-C-hhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLKINLVP-N-IATYNSLVSGLCNSGELDRAKRLFCK 783 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 783 (806)
..+.+.++|+..++++++.-..+ + ..+...|+.+|+..|++++++++.-.
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788899999999999853333 2 34677888999999999999987543
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.83 E-value=78 Score=29.57 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 037510 274 KQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 274 ~~g~~~~a~~~~~~~~~~ 291 (806)
..+++.+|+++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666665443
No 362
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.28 E-value=5.8 Score=22.63 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 762 NSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 762 ~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
..+...+...|++++|...++...
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444455555555444444
No 363
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.06 E-value=2.7 Score=40.95 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=76.5
Q ss_pred HhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCHHH
Q 037510 699 CKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIA-TYNSLVSGLCNSGELDR 776 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 776 (806)
...|.++.|++.|...++ +.|... .|..-..++.+.+++..|+.-+..+++ +.||.. -|-.-..+-...|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 457889999999999999 677764 777788899999999999999999998 667543 44444556667899999
Q ss_pred HHHHHHHHHHCCCCCCHhhH
Q 037510 777 AKRLFCKLRQKGLTPTVVTY 796 (806)
Q Consensus 777 A~~~~~~m~~~g~~p~~~~~ 796 (806)
|...+....+.++.+....|
T Consensus 201 aa~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHHHhccccHHHHHH
Confidence 99999999998887776544
No 364
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.58 E-value=98 Score=30.14 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHH-CCCCCCcchHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHH
Q 037510 383 DMTEAFRLCAEMLR-QGIEPSVVTYNTLLKGLCR-VG-DVDEALHLWLMMLK-RCVCPNEVGYCTLLDILFNKGDFYGAV 458 (806)
Q Consensus 383 ~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~ 458 (806)
.+.+|+++|+.... ..+--|......+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666653221 2233455566666666655 22 22222233333332 234567777888888888899998888
Q ss_pred HHHHHHHHC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037510 459 KLWNNILAR-GFYKNTITFNTMIKGLCKMGKMTEAQKIFDK 498 (806)
Q Consensus 459 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 498 (806)
++|+..... +...|...|..+|......|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888887766 5566888888999998888887766665553
No 365
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.98 E-value=1.3e+02 Score=31.44 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHccCChHHHHHHHHHHH---HcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCCCChhhhh
Q 037510 597 WCDAGMLNKAFKAYFDMI---EKGFSPN-----VAICSKLVSTLCRLGKIDEANIFLQKMVD-------FDFVPDLKYMA 661 (806)
Q Consensus 597 ~~~~g~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~ 661 (806)
+.-.|++.+|.+++...- ..|...+ -..++.+.-...+.|.+..+..+|.++++ .|+.|...+..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 456788999888775432 1222222 22345565566678888888888887774 34444322211
Q ss_pred hhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 037510 662 SSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAV 736 (806)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 736 (806)
+. .+.-..+|| .+-.|...|++-.|.+.|.+.... +..+.-.|--|..+|...
T Consensus 330 s~--------------------nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQ--------------------NKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hc--------------------ccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 10 011223454 455678899999999999988774 556677888888888654
No 366
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.63 E-value=1.1e+02 Score=30.23 Aligned_cols=37 Identities=16% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChhHHH
Q 037510 301 YGVLIDGYCKVGKVDEAIRVLNEMLK----TGLEMNLLICN 337 (806)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 337 (806)
+.....-||+-|+.+.|.+.+.+-.+ .|.+.|+..+.
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~ 147 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYK 147 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 34444556666666666655554332 34444544433
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.46 E-value=1e+02 Score=29.92 Aligned_cols=82 Identities=23% Similarity=0.279 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
-++.....++..|.+.|++.+|...|-.- -.|+...+..++.-....|...++--++-++ +
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra---------------V 148 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEADLFIARA---------------V 148 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--HHHHHHHH---------------H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcchhHHHHHH---------------H
Confidence 47778889999999999999998777432 1233344434454444445444442222222 1
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037510 766 SGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~ 786 (806)
--|.-.|+...|...++...+
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 234455666666666655543
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.12 E-value=20 Score=37.87 Aligned_cols=86 Identities=21% Similarity=0.099 Sum_probs=53.8
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELD 775 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 775 (806)
+...|+...|...+..+.- ..|.. +....|+....+.|....|-.++.+.+... ...+-++..++.++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3455777777777666655 44533 355566666666666666777766666543 334555566666676667777
Q ss_pred HHHHHHHHHHH
Q 037510 776 RAKRLFCKLRQ 786 (806)
Q Consensus 776 ~A~~~~~~m~~ 786 (806)
.|++.|+...+
T Consensus 694 ~a~~~~~~a~~ 704 (886)
T KOG4507|consen 694 GALEAFRQALK 704 (886)
T ss_pred HHHHHHHHHHh
Confidence 77777776555
No 369
>PRK10941 hypothetical protein; Provisional
Probab=68.94 E-value=56 Score=31.81 Aligned_cols=56 Identities=11% Similarity=-0.021 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
.|-.+|.+.++++.|+...+.++. +.| |+.-+.--+-.|.+.|.+..|..=++..+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 444444555555555555555544 333 23333333444445555555554444443
No 370
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.47 E-value=1.2e+02 Score=29.33 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHH-HHHHHHhcCCHhHHHHHHHHHHH----CCCCCCH
Q 037510 513 TLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNY-LISVAFKSRELTSLVDLLAEMQT----MGLYPNI 587 (806)
Q Consensus 513 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~----~g~~p~~ 587 (806)
-++..+.+.|.+.+|+.+.+.+.. +..+..-+++..+... =-..|..-+++..+..-+...+. .-++|-.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~-----ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLH-----ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH-----HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 467778889999999887765521 1133333443222111 11233344444443333333322 1234444
Q ss_pred hHHHHHHHH--HHccCChHHHHHHHHHHHH
Q 037510 588 VTYGALISG--WCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 588 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 615 (806)
..-..++++ .|...++..|..+|-+..+
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 444444444 3455677788888877776
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.32 E-value=1.2e+02 Score=29.31 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 037510 442 CTLLDILFNKGDFYGAVKLWNNI 464 (806)
Q Consensus 442 ~~l~~~~~~~g~~~~A~~~~~~~ 464 (806)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34666677777777777655443
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.54 E-value=59 Score=25.62 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=5.6
Q ss_pred HHhcCChHHHHHH
Q 037510 518 YCKVGNLEEAFKI 530 (806)
Q Consensus 518 ~~~~g~~~~A~~~ 530 (806)
+...|++++|..+
T Consensus 49 LmNrG~Yq~Al~l 61 (115)
T TIGR02508 49 LMNRGDYQSALQL 61 (115)
T ss_pred HHccchHHHHHHh
Confidence 3344444444433
No 373
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.34 E-value=11 Score=38.88 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=74.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHH
Q 037510 630 STLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARR 709 (806)
Q Consensus 630 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 709 (806)
....+.+.++.|..++.++++.+.. +.+.|..-..++.+.+++..|+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn--------------------------------ca~~~anRa~a~lK~e~~~~Al~ 59 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN--------------------------------CAIYFANRALAHLKVESFGGALH 59 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc--------------------------------ceeeechhhhhheeechhhhHHH
Confidence 3445667888999999999887532 33444445577888888888888
Q ss_pred HHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 710 IFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
=+.++++ ..|+.. .|.--+.+|.+.+.+.+|+..|+.... +.|+.......+.-|-
T Consensus 60 Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 60 DALKAIE--LDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHhhhh--cCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 8888888 567764 666666777888888888888888877 6776665555554433
No 374
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=66.20 E-value=1.5e+02 Score=29.89 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHHHHh---cCCHHHHHHHHHHHHHc------CC--
Q 037510 687 NYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDN-FTYSTLIHGYAA---VGDINEAFNLRDEMLKI------NL-- 754 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~-- 754 (806)
+...+..++..+.+..+.++..+.+++++. ..|+. ..|...++.... .-.++...+.|.+.++. +.
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~ 141 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMT 141 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccc
Confidence 666777788888888888899999999998 56765 467666665544 23577777777776651 11
Q ss_pred --CCCh-------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037510 755 --VPNI-------ATYNSLVSGLCNSGELDRAKRLFCKLRQKGL 789 (806)
Q Consensus 755 --~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 789 (806)
.+-. ..+..+..-+..+|..|.|..+++-+.+.++
T Consensus 142 ~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 142 SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 0011 1223333445688999999999999887655
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.13 E-value=41 Score=30.86 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=19.9
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 754 LVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 754 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|++..|..++.++...|+.++|..+..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.75 E-value=2.6e+02 Score=32.42 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChh-hHHHHHH---HHHHcCChHHHHHHHHHHHH
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLR-SCNCLLS---NLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~---~~~~~~~~~~A~~~~~~m~~ 185 (806)
|..-+..+.....+++|..+-+.....++..... .+..... -+..+|++++|...|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 6666777777888999999888766533221111 1222222 25678999999999998754
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.46 E-value=16 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=10.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 037510 199 VNAYCKEKSMEKALDFVKEMEN 220 (806)
Q Consensus 199 ~~~~~~~g~~~~a~~~~~~~~~ 220 (806)
..+|...|+.+.|+++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555554444443
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.41 E-value=1.4e+02 Score=29.06 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 037510 226 NVVTYNSLIDGYVSLGDLNGAKRVLE 251 (806)
Q Consensus 226 ~~~~~~~li~~~~~~g~~~~A~~~~~ 251 (806)
+......+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56677777888888888887776663
No 379
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.08 E-value=1.9e+02 Score=30.53 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHCCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 390 LCAEMLRQGIEPSVVT---YNTLLKGLCRVGDVDEALHLWLMMLKRCVCPN 437 (806)
Q Consensus 390 ~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 437 (806)
+++.+++.|..++... ..+++...+..|+.+ +.+.+++.|..++
T Consensus 183 iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 183 ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 3444555665554322 123344344455543 3344445555554
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.74 E-value=27 Score=37.01 Aligned_cols=106 Identities=13% Similarity=-0.024 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037510 548 IVPSIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSK 627 (806)
Q Consensus 548 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 627 (806)
+.|--.+.|.....+...|+...|...+.........-..+....|...+.+.|....|..++.+.+... ...+.++..
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHh
Confidence 3343333443334445678888888888776654222233445566677778888889999999888764 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037510 628 LVSTLCRLGKIDEANIFLQKMVDFDFV 654 (806)
Q Consensus 628 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 654 (806)
+.+++....+++.|++.|+++.+.+..
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 999999999999999999999887643
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.98 E-value=2e+02 Score=30.33 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=73.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccChhhhhcC--CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-------CCC
Q 037510 516 DGYCKVGNLEEAFKIKNLMERREILPSMEKEA--IVP---SIDMYNYLISVAFKSRELTSLVDLLAEMQT-------MGL 583 (806)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~g~ 583 (806)
..+.-.|++.+|.+++....-. ...| +.| .-..+|.+...+.+.|.+..+..+|....+ .|+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~------~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIH------KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccc------cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 4456789999999887654111 1111 122 223346677777788887777777766553 465
Q ss_pred CCCH-----------hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 584 YPNI-----------VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCR 634 (806)
Q Consensus 584 ~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 634 (806)
.|.. .+||. .-.|...|+.-.|.+.|.+.... +..++..|..+..+|..
T Consensus 322 ~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred CCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 5532 23333 23467899999999999999875 56688999999988863
No 382
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=63.88 E-value=1.8e+02 Score=29.78 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=50.1
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037510 585 PNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSP---NVAICSKLVSTLCRLGKIDEANIFLQKMVDF 651 (806)
Q Consensus 585 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 651 (806)
....+|..++..+.+.|+++.|...+.++...+... .+...-.-+..+-..|+..+|...++..+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345578888888999999999999999988743211 3334444456667789999999999988873
No 383
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=65 Score=31.88 Aligned_cols=83 Identities=16% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHC---CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChh-cHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLT---GFSPDNFTY--STLIHGYAAVGDINEAFNLRDEMLK-----INLVPNIA-TYN 762 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~-~~~ 762 (806)
++...-+.++.++|+++++++.++ .-.||.+.| ...+..+...||..++.+.+.+..+ -|++|+.+ .|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 445556677999999999999865 456777644 5566777789999999999888776 57777554 455
Q ss_pred HHHHHHH-hcCCHHH
Q 037510 763 SLVSGLC-NSGELDR 776 (806)
Q Consensus 763 ~l~~~~~-~~g~~~~ 776 (806)
.+..-|. +.|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 5555444 4455544
No 384
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.90 E-value=87 Score=30.19 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHH-----
Q 037510 409 LLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGL----- 483 (806)
Q Consensus 409 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----- 483 (806)
=|++++..+++.++....-+-.+.--+.........|-.|.+.|....+.++-..-+...-.-+..-|.+++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 356777777777776655444333222334455556666777777777777666666543223333455554443
Q ss_pred HhcCCHHHHHHHH
Q 037510 484 CKMGKMTEAQKIF 496 (806)
Q Consensus 484 ~~~g~~~~a~~~~ 496 (806)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4458888887776
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.71 E-value=1.4e+02 Score=28.38 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCC----CCC-------HhHHHHHHHHHHccCChHHHHHHHHHHHH-cCCCCCH
Q 037510 555 YNYLISVAFKSRELTSLVDLLAEMQTMGL----YPN-------IVTYGALISGWCDAGMLNKAFKAYFDMIE-KGFSPNV 622 (806)
Q Consensus 555 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 622 (806)
-..|...|...+++....+++.++...-. ..| ...|..-|..|....+-.+-..+|++.+. +.--|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34466667777777777777766653210 111 23455566677766666666677777664 2224555
Q ss_pred HHHHHHHH----HHHhcCCHHHHHHHHHHHhh
Q 037510 623 AICSKLVS----TLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 623 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 650 (806)
.+...+-. ...+.|++++|..-|-++.+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 44433322 23356788887665555443
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.29 E-value=46 Score=28.00 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhcCC---hhhHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037510 687 NYVVYNIVIAGICKSGN---VTDARRIFSALLLTGFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI 758 (806)
Q Consensus 687 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 758 (806)
...+-..+.+++.+..+ ..+.+.+|+++.+ .-.|+. ....-|.-+|.+.+++++++++.+.+++ .+||.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 44455567778877654 6778999999987 234544 3444677889999999999999999988 45543
No 387
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.98 E-value=2.7e+02 Score=31.17 Aligned_cols=121 Identities=15% Similarity=0.070 Sum_probs=67.0
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHH
Q 037510 596 GWCDAGMLNKAFKAYFDMIEKGFSPN--VAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIA 673 (806)
Q Consensus 596 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 673 (806)
++.--|+.++|..+..+|.... .|- ..-..++..+|+..|+......++.-...-.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~--------------------- 567 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV--------------------- 567 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc---------------------
Confidence 3455566677778888877542 221 1122345566777777665555554433211
Q ss_pred hhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 674 MSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF--TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.-|..-+..+.-++.-..+++....+.+-+.+. .+|..- +--+|+-+|+-.|+ .+|+.+++-|..
T Consensus 568 -----------nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 568 -----------NDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred -----------chHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 112233333344455556666666666655553 445442 34456667777776 567778777765
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=61.96 E-value=1.7e+02 Score=28.96 Aligned_cols=150 Identities=17% Similarity=0.025 Sum_probs=93.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCD----AGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLG---- 636 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 636 (806)
..+..+|.+.+....+.|.. .....|...|.. ..+..+|...|.++.+.|..+.......+...|..-+
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred cccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence 44578899999987776632 233334444443 3488999999999999885443333445555554431
Q ss_pred ---CHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHh----cCChhhHHH
Q 037510 637 ---KIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICK----SGNVTDARR 709 (806)
Q Consensus 637 ---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 709 (806)
+...|...+.++...+ +......+...|.. ..+.++|..
T Consensus 167 ~~~~~~~A~~~~~~aa~~~----------------------------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 167 VAYDDKKALYLYRKAAELG----------------------------------NPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred ccHHHHhHHHHHHHHHHhc----------------------------------CHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 2236777777777665 33355556555533 447899999
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCC
Q 037510 710 IFSALLLTGFSPDNFTYSTLIHGYAAVG---------------DINEAFNLRDEMLKINLV 755 (806)
Q Consensus 710 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 755 (806)
.|.+..+.|. ......+. .+...| +...|...+......+..
T Consensus 213 wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 213 WYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 9999999764 33333444 455554 566666666666665533
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.93 E-value=4.9e+02 Score=33.88 Aligned_cols=314 Identities=15% Similarity=0.069 Sum_probs=164.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLGF--ELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCK 274 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 274 (806)
.+..+-.+.+.+.+|...++.-..... ......|-.+...|...+++|....+...-... | .....|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---P---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---c---cHHHHHHHHHh
Confidence 445566678889999999988421111 112334555556899999999888877642211 2 23445666778
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHH-HHHHHHhcCCHhHHH
Q 037510 275 QHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNS-LINGYCKLGQVCEAK 353 (806)
Q Consensus 275 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~ 353 (806)
.|++..|...|+++.+.+ ++...+++-++......|.++..+...+-..... .+....++. =+.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 899999999999998752 3336678878877778888888777665554432 223333333 344446777777766
Q ss_pred HHHHHHhhCCCCCChhcHHHH--HHHHHhc--CCHHHHHHHHHHHHHCCCCC---------CcchHHHHHHHHHhcCCHH
Q 037510 354 RVLRCMGDWNLRPDSFSFNTL--VDGYCRE--CDMTEAFRLCAEMLRQGIEP---------SVVTYNTLLKGLCRVGDVD 420 (806)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~m~~~g~~~---------~~~~~~~ll~~~~~~~~~~ 420 (806)
..+. + .+..+|... .....+. .+.-.-.+.++.+.+.-+.| -...|..++....-..-..
T Consensus 1539 ~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6654 1 123333332 2222221 11111112232222211110 0112333332221111100
Q ss_pred HHHHHHHHHHHcCCCCChh------hHHHHH---HHHHhcCChhHHHH-HHHHHHHC-CC-CCcHHHHHHHHHHHHhcCC
Q 037510 421 EALHLWLMMLKRCVCPNEV------GYCTLL---DILFNKGDFYGAVK-LWNNILAR-GF-YKNTITFNTMIKGLCKMGK 488 (806)
Q Consensus 421 ~a~~~~~~~~~~~~~~~~~------~~~~l~---~~~~~~g~~~~A~~-~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~ 488 (806)
....+ .++.++.. -|..-+ ..+.+..+.-.|.+ .+.....+ +. ..-..+|-...+.....|+
T Consensus 1612 ~~~~l------~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 SIEEL------KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred HHHHh------hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 00000 11222111 111111 11111111111111 11111111 11 1124567788888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLME 535 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 535 (806)
++.|...+-...+.+ . +..+-..+......|+...|+.+++...
T Consensus 1686 ~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999888887765 2 3445566778889999999999998764
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.17 E-value=84 Score=24.83 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=31.7
Q ss_pred HHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 037510 131 IYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVG 187 (806)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 187 (806)
++..+|++++|..+.+.. +.||...|-+|.. .+.|-.+.+..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345677777777776655 3477777766544 34555566666666665554
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.11 E-value=31 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=24.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDG 802 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 802 (806)
..+.|-..++..++++|.+.|+.-+...|..++..
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34567777777777777777777777777766653
No 392
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=58.76 E-value=88 Score=24.59 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=26.7
Q ss_pred hHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 037510 140 NALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMM 184 (806)
Q Consensus 140 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 184 (806)
++.+.+..+...+..|++....+-++++.+-+++..|+.+|+-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666666554
No 393
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.77 E-value=1.6e+02 Score=28.07 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhC
Q 037510 603 LNKAFKAYFDMIE---KGFSPNVAICSKLVS-----TLCRLGKIDEANIFLQKMVDF 651 (806)
Q Consensus 603 ~~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~ 651 (806)
.+.|.+.|+++.+ ..++|...++..++- .|-..|+.++|..+.++..+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3567777777664 225666555444432 344689999999998887754
No 394
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.77 E-value=3.1e+02 Score=30.54 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=25.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 037510 402 SVVTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNIL 465 (806)
Q Consensus 402 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 465 (806)
+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..+.++|+...+..+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455666677777777777776665544311 22345555556666666655555444444
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=57.69 E-value=41 Score=22.96 Aligned_cols=29 Identities=41% Similarity=0.512 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHCCCCCCHH
Q 037510 694 VIAGICKSGNVTDARRIFSALLLTGFSPDNF 724 (806)
Q Consensus 694 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 724 (806)
+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 44456677777777777777776 566654
No 396
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.18 E-value=2.4e+02 Score=30.41 Aligned_cols=108 Identities=8% Similarity=0.058 Sum_probs=71.0
Q ss_pred HhHHHHHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHH-Hh------hcc----CCCHHHHHHH---HHHHH
Q 037510 68 IKCYCKIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVR-AY------KEF----AFSPTVFDMI---LKIYA 133 (806)
Q Consensus 68 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~-~~------~~~----~~~~~~~~~l---~~~~~ 133 (806)
..+.-.|++++-..|+++.|..++...+=. ++.... .+ .+. +.+...|..| +....
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~----------~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~ 353 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYV----------FDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLA 353 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHH----------HHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHH
Confidence 346778899999999999999888765311 111000 00 001 1122333333 33456
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLV-KNGEGYVALLVYEQMMR 185 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~ 185 (806)
++|-+.-|.++...+.+..+.-|+.....+|+.|+ +..+++.-+++++....
T Consensus 354 ~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 354 QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 78888899988888888776667788888888775 67788888888877644
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.09 E-value=23 Score=25.17 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037510 728 TLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 728 ~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
.++.+|...|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 398
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.26 E-value=56 Score=25.63 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred HhcCChhhHHHHHHHHHHC---CCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 699 CKSGNVTDARRIFSALLLT---GFSPD-----NFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 699 ~~~g~~~~A~~~~~~~~~~---g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.+.|++.+|.+.+.+..+. ...+. ..+.-.++..+...|++++|++.++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678888887766665542 11222 12444566777888999999999999887
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.67 E-value=3.3e+02 Score=30.28 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHcCCCchHHHHHHHH
Q 037510 69 KCYCKIVHILSRARMFDETRAFLYE 93 (806)
Q Consensus 69 ~~~~~l~~~l~~~~~~~~a~~~l~~ 93 (806)
..|...+..+.-.|++++|..+|..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5788888888899999999999843
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.59 E-value=2.1e+02 Score=27.99 Aligned_cols=63 Identities=5% Similarity=-0.088 Sum_probs=34.7
Q ss_pred CCChhHHHHHHHHHHhcCCHhHHHHHHHHHhhC-CCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 330 EMNLLICNSLINGYCKLGQVCEAKRVLRCMGDW-NLRPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
.++..+...+++.++..+++.+-.++++..... +...|...|..+|+.....|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 445555555566666666666666655554433 334455566666666666666554444443
No 401
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.38 E-value=1.5e+02 Score=28.65 Aligned_cols=21 Identities=19% Similarity=0.059 Sum_probs=9.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHh
Q 037510 340 INGYCKLGQVCEAKRVLRCMG 360 (806)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~~~ 360 (806)
|-.|.|.+....+.++-....
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334445555554444444443
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.96 E-value=28 Score=24.75 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 739 INEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 739 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+++..++++.+.. .+=|..---.++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444443 112333344678899999999999999999875
No 403
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=2.2e+02 Score=27.63 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFS 712 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~ 712 (806)
++..+..-|++.++.+.+.+...
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 33444444444444444444443
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.36 E-value=3.2e+02 Score=29.08 Aligned_cols=242 Identities=11% Similarity=0.107 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChhHH
Q 037510 386 EAFRLCAEMLRQGIEPSVVTYNTLLKGLCRV------GDVDEALHLWLMMLKRC-VCP-NEVGYCTLLDILFNKGDFYGA 457 (806)
Q Consensus 386 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A 457 (806)
....+|++..+. .|+...+...|..|... ..+.....+++.....+ ..+ ....|..+.-.++......++
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344566665542 34444555555554432 23445556666655532 222 345666666666665543322
Q ss_pred HHHHHHHHHCCCCCcHHHHHHHHHHHHhcC-CHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHH--HHH
Q 037510 458 VKLWNNILARGFYKNTITFNTMIKGLCKMG-KMTEA-QKIFDKMKELGCLPNIITYRTLSDGYCKVGN-LEEAFK--IKN 532 (806)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~--~~~ 532 (806)
-..+...++..+...|-.-+....+.. +++-- ..++......-..+....|+... .|+ ...... ++.
T Consensus 378 ---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 378 ---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred ---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 222222233446666655555444221 22111 11222222221122333344333 122 111110 111
Q ss_pred HHHhcccChhhhhcCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHH--ccCChHHHHHH
Q 037510 533 LMERREILPSMEKEAIVPSIDM-YNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIVTYGALISGWC--DAGMLNKAFKA 609 (806)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~ 609 (806)
. ...-..|+..+ -+.++..+.+.|-...|...+..+... .+|+...|..++..-. ..-+..-+.++
T Consensus 450 a----------~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~ 518 (568)
T KOG2396|consen 450 A----------LLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREY 518 (568)
T ss_pred H----------HHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHH
Confidence 1 12223344433 356788888999999999999999886 3566777777776422 22347788899
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037510 610 YFDMIEK-GFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVD 650 (806)
Q Consensus 610 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 650 (806)
|+.|... | .|+..|...+.-=...|..+.+-.++.++.+
T Consensus 519 yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 519 YDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 9988864 4 6777776666655688999988888877765
No 405
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.06 E-value=68 Score=25.12 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=37.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCC-----hhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 733 YAAVGDINEAFNLRDEMLKIN---LVPN-----IATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 733 ~~~~g~~~~A~~~~~~~~~~~---~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..+.|++.+|.+.+.+..+.. ..+. ....-.+.......|++++|...+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467899999988888877631 1111 12223455667788999999999999764
No 406
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.35 E-value=17 Score=30.27 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 768 LCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 768 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
+.+.|...+|-.+|++|.+.|-.|| .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4456677778888888888887776 456666554
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.26 E-value=35 Score=31.31 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=47.4
Q ss_pred cCCChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhh
Q 037510 44 LRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGL 97 (806)
Q Consensus 44 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~ 97 (806)
...++.....+-+|+.+--.+.|++..|..++.++...|+.++|...+.++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355788888999999877788999999999999999999999999999888654
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.54 E-value=81 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLKI----NL-VPNIATYNSLVSGLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 785 (806)
....++.-|.+.|++++|.++|+.+... |- .+...+...+..++.+.|+.++.+.+.=+|.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3346788899999999999999998641 21 2234566677788889999998888766654
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.89 E-value=1.3e+02 Score=23.37 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCH
Q 037510 720 SPDN-FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGEL 774 (806)
Q Consensus 720 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 774 (806)
.|+. .....+...+...|++++|++.+-++++..-.. +-..-..|+..|.-.|.-
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4655 466677788888888888888888887743222 333445566666655553
No 410
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.44 E-value=1.2e+02 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.035 Sum_probs=13.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 727 STLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
..|+-.|++.|+-+.|.+-|+.=..
T Consensus 76 AhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 76 AHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHhhcCChHHHHHHHHHhhh
Confidence 3444555555655555555555443
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.80 E-value=3.3e+02 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=31.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHH--HHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 037510 202 YCKEKSMEKALDFVKEMENLGFELNVV--TYNSLIDGYV--SLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 202 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~ 255 (806)
+.+.+++..|.++++.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44666777777777777665 444333 3444444443 34566777777776665
No 412
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.80 E-value=2.2e+02 Score=25.75 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCC--------------CCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 338 SLINGYCKLGQVCEAKRVLRCMGDWNL--------------RPDSFSFNTLVDGYCRECDMTEAFRLCA 392 (806)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 392 (806)
+++-.|-+.-++.+..++++.|.+..+ .+.-..-|.....+.+.|..+.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 445556666667777777666644321 1222233444445555555555555554
No 413
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=45.79 E-value=2.6e+02 Score=26.19 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
-.++....+.|+.++|.+.|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455556667777777777776664
No 414
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.73 E-value=3.9e+02 Score=28.17 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 037510 373 TLVDGYCRECDMTEAFRLCAEMLRQGIEPSV 403 (806)
Q Consensus 373 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 403 (806)
+.+...+..|+. ++.+-+.+.|..++.
T Consensus 204 t~l~~A~~~~~~----~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 204 AALCYAIENNKI----DIVRLFIKRGADCNI 230 (413)
T ss_pred hHHHHHHHcCCH----HHHHHHHHCCcCcch
Confidence 334434445554 344455566665553
No 415
>PRK10941 hypothetical protein; Provisional
Probab=45.69 E-value=2.6e+02 Score=27.32 Aligned_cols=58 Identities=14% Similarity=-0.043 Sum_probs=27.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037510 233 LIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYCKQHKMEEAENMLRRMKEE 291 (806)
Q Consensus 233 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 291 (806)
|-.+|.+.++++.|.++.+.+....+ .++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33444555555555555555554332 12333333344445555555555555544443
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.12 E-value=86 Score=31.02 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHC-CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHH
Q 037510 691 YNIVIAGICKSGNVTDARRIFSALLLT-GFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNI-ATYNSLVS 766 (806)
Q Consensus 691 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~ 766 (806)
|--=++-|.+..++..|...|.+-++. --.||. +.|+.-..+....|++..|+.-..+++. +.|+. ..|.-=..
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhH
Confidence 444567788999999999999988775 233543 5788888888888999999999988888 56743 45555556
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037510 767 GLCNSGELDRAKRLFCKLR 785 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m~ 785 (806)
++....++.+|..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7777777777777666653
No 417
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.70 E-value=1.6e+02 Score=29.28 Aligned_cols=96 Identities=21% Similarity=0.128 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDF-VPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSG 702 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 702 (806)
.|.-=++-|.+.+++..|...|.+-++... .|+ -+.+.|+.-..+-.-.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------------------------lnavLY~NRAAa~~~l~ 133 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------------------------LNAVLYTNRAAAQLYLG 133 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------------------------HHHHHHhhHHHHHHHHH
Confidence 334445668888999999999988876542 221 36678888888888899
Q ss_pred ChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEML 750 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 750 (806)
++..|+.--.+.+. +.|+.. .|.-=..++.....+.+|....++..
T Consensus 134 NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 134 NYRSALNDCSAALK--LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHh--cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999888 889886 55555566666677666666665543
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.57 E-value=26 Score=29.32 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=26.0
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 037510 697 GICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHG 732 (806)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 732 (806)
...+.|.-..|..+|++|++.|-.||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345668888999999999999988885 5555544
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.24 E-value=1.2e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=23.1
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 708 RRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.+-+..+...++-|+......-+.+|.+.+|+.-|+.+|+-+..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555543
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=3e+02 Score=26.16 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 690 VYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 690 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
.+-....++...|++-++++.-.+++. ..|+++ +|-.-+.+.+..=+..+|..-|...++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 344455666777888888888888887 567665 777777777777777888888888877
No 421
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.80 E-value=1.3e+02 Score=25.11 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 740 NEAFNLRDEMLKINLVPNI-ATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 740 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
++..++|..|...|+-... ..|......+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4477889999988776643 456777778889999999998876
No 422
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.77 E-value=3.8e+02 Score=27.20 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCcHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcC
Q 037510 450 NKGDFYGAVKLWNNILARGFYKNTITFNTM----IKGLCKMGKMTEAQKIFDKMKELG 503 (806)
Q Consensus 450 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~ 503 (806)
+-++..-+......+.++++..-..+|.++ |....+.+..++|.+..-+|.+.|
T Consensus 289 kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 289 KDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 344444455555555554433344444443 233345566667777777776654
No 423
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.74 E-value=2.6e+02 Score=25.41 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=50.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHC--CCCCCHHhHHHHHH-HHHhcC--CHHHHHHHHHHHHHcCCCCChh----cHHH
Q 037510 693 IVIAGICKSGNVTDARRIFSALLLT--GFSPDNFTYSTLIH-GYAAVG--DINEAFNLRDEMLKINLVPNIA----TYNS 763 (806)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~-~~~~~g--~~~~A~~~~~~~~~~~~~p~~~----~~~~ 763 (806)
...-.....|++++|..-++++.+. .+.--...|..+.. +++..+ .+-+|.-++.-.... ..|++. ....
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~~ 112 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPIA 112 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHHH
Confidence 3344456778888888888877653 01111123444443 445444 355666666555543 334321 1111
Q ss_pred HHHH--------------HHhcCCHHHHHHHHHHHHH
Q 037510 764 LVSG--------------LCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 764 l~~~--------------~~~~g~~~~A~~~~~~m~~ 786 (806)
.+.+ ..+.|++++|.++++-|.+
T Consensus 113 YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 113 YILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2222 3377999999999888754
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.53 E-value=1.6e+02 Score=24.49 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037510 570 SLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLV 629 (806)
Q Consensus 570 ~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 629 (806)
+..+-++.+....+.|++.....-+.+|.+.+++..|.++|+-...+ +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44555666677778899998899999999999999999999887754 223233454443
No 425
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=3.4e+02 Score=26.47 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=34.4
Q ss_pred ChHhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCChhHHHH-HHHHHHhcCCHhHHHHHHHHHhhCC
Q 037510 297 DEYAYGVLIDGYCKVGKVDEAIRVLNEMLK----TGLEMNLLICNS-LINGYCKLGQVCEAKRVLRCMGDWN 363 (806)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~ 363 (806)
-...+..+..-|++.++.+.+.++.++..+ .|.+.|+..... |.-.|....-.++-++..+.|.+.|
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 344566677777777777777766665443 344444332221 1112222222455555555555554
No 426
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.02 E-value=1.9e+02 Score=23.30 Aligned_cols=79 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHH
Q 037510 703 NVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
.+++|..+.+=+...+- -..++--.-+..+...|++++| +..-.... .||...+-+| +-.+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~-~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCHC-YPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccCC-CccHHHHHHH--HHHhhccHHHHHHHHH
Q ss_pred HHHHCC
Q 037510 783 KLRQKG 788 (806)
Q Consensus 783 ~m~~~g 788 (806)
++-.+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
No 427
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.98 E-value=5.7e+02 Score=28.79 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=75.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHH
Q 037510 629 VSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDAR 708 (806)
Q Consensus 629 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 708 (806)
.-++.--|+-++|..+.+++.... .|-. ...-.-++.-+|+-.|+.....
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk-dpil-----------------------------R~~Gm~t~alAy~GTgnnkair 557 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK-DPIL-----------------------------RYGGMYTLALAYVGTGNNKAIR 557 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC-chhh-----------------------------hhhhHHHHHHHHhccCchhhHH
Confidence 344556688888999998887543 2210 0011234566888888887777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhc--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 709 RIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIAT--YNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 709 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+++.-... +..-|.--+....-++.-..+.+....+.+-+.+. ..|.... -.+|+-+|.-.|. .+|..+++-|..
T Consensus 558 ~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 558 RLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred Hhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 77665544 12222223444444555566888877777766663 3454332 3344455666666 789999999985
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.32 E-value=5.8e+02 Score=28.71 Aligned_cols=197 Identities=15% Similarity=0.183 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhc
Q 037510 569 TSLVDLLAEMQTMGLYPN---IVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVA----------ICSKLVSTLCRL 635 (806)
Q Consensus 569 ~~a~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~ 635 (806)
++-...+++|+.+--.|+ ..+...++-.|....+++.-+++.+.+.+. ||.. .|.-.++--.+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 344566777776533444 345556666788888888888888887753 3211 122222223355
Q ss_pred CCHHHHHHHHHHHhhC--CCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHH--HHHHHHhcCChhhHHHHH
Q 037510 636 GKIDEANIFLQKMVDF--DFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNI--VIAGICKSGNVTDARRIF 711 (806)
Q Consensus 636 g~~~~A~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~ 711 (806)
|+-++|+...-.+.+. ...||..|+... +|-- +-..|...+..+.|.+.|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GR--------------------------IYKDmF~~S~ytDa~s~~~a~~Wy 310 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGR--------------------------IYKDMFIASNYTDAESLNHAIEWY 310 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeech--------------------------hhhhhhhccCCcchhhHHHHHHHH
Confidence 7888888877777654 355665554221 1111 122344556677788888
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHH-------cCCCCChhcHHHH---HHHHHhcCCHHHHHHH
Q 037510 712 SALLLTGFSPDNFTYSTLIHGYAAVG-DINEAFNLRDEMLK-------INLVPNIATYNSL---VSGLCNSGELDRAKRL 780 (806)
Q Consensus 712 ~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-------~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~ 780 (806)
++.-+ ..|...+=-.+...+...| .++...++-.-..+ +|.--....|.-+ ..+-.-++++.+|...
T Consensus 311 rkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 311 RKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred HHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHH
Confidence 88887 6777653222222233333 23333332221111 2211122222211 2223356888899999
Q ss_pred HHHHHHCCCCCCHhhHHH
Q 037510 781 FCKLRQKGLTPTVVTYNI 798 (806)
Q Consensus 781 ~~~m~~~g~~p~~~~~~~ 798 (806)
.+.|.+ ++|-..-.+.
T Consensus 389 ae~mfK--Lk~P~WYLkS 404 (1226)
T KOG4279|consen 389 AEMMFK--LKPPVWYLKS 404 (1226)
T ss_pred HHHHhc--cCCceehHHH
Confidence 999887 6665444333
No 429
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.19 E-value=4.4e+02 Score=27.20 Aligned_cols=171 Identities=8% Similarity=0.026 Sum_probs=98.7
Q ss_pred HcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------hcC
Q 037510 134 QKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC-------KEK 206 (806)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~g 206 (806)
..++++.-+.++..-+ -.+.++..+...+..+|+.+.|.++.++.+-. +........ ..|
T Consensus 22 ~~~Dp~~l~~ll~~~P-----yHidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~~~~F~~~~~~~~~g 88 (360)
T PF04910_consen 22 QSHDPNALINLLQKNP-----YHIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAFHPSFSPFRSNLTSG 88 (360)
T ss_pred HccCHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHHHHhhhhhcccccC
Confidence 3445555555543322 26677777778888888888888877776421 111110000 000
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 037510 207 SMEKALDFVKEMENLGFELNVVTYNSL---IDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYC-KQHKMEEAE 282 (806)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~ 282 (806)
.. + ......-|...|.++ |..+.++|.+..|.++.+-+...++.-|+..-..+|+.|+ +.++++--+
T Consensus 89 ~~--------r-L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 89 NC--------R-LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred cc--------c-cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 00 0 001112244455544 4567789999999999999999887667777777787775 677888888
Q ss_pred HHHHHHHhc--CC---CCCChHhHHHHHHHHHhcCC--------------hHHHHHHHHHHHHC
Q 037510 283 NMLRRMKEE--DD---VIVDEYAYGVLIDGYCKVGK--------------VDEAIRVLNEMLKT 327 (806)
Q Consensus 283 ~~~~~~~~~--~~---~~~~~~~~~~li~~~~~~g~--------------~~~a~~~~~~~~~~ 327 (806)
++.+..... .. .-|+ ..|+..+..+...+. .+.|...+.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~lPn-~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 160 DFSESPLAKCYRNWLSLLPN-FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred HHHHhHhhhhhhhhhhhCcc-HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 888876541 01 1222 355555544433222 26677777666554
No 430
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.94 E-value=3.9e+02 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHH
Q 037510 261 TAVTYTTLTKGYCKQHKMEEAE 282 (806)
Q Consensus 261 ~~~~~~~li~~~~~~g~~~~a~ 282 (806)
|+..|..+..+|.-.|+...+.
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHH
Confidence 5555666666666555554444
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.89 E-value=1.1e+02 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.405 Sum_probs=17.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 037510 310 KVGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340 (806)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 340 (806)
+.|-+.++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555556666665555555555555444
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=37.50 E-value=2.7e+02 Score=24.04 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=21.5
Q ss_pred hcHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHhh
Q 037510 759 ATYNSLVSGLCNSGE-LDRAKRLFCKLRQKGLTPTVVTYNILIDGY 803 (806)
Q Consensus 759 ~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 803 (806)
..+..+..+..+..- .--+..+|+-|.+.+..++...|..+|.++
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344455554444333 233444455555545555555555555544
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.43 E-value=4.5e+02 Score=26.56 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhc
Q 037510 603 LNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARS 682 (806)
Q Consensus 603 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (806)
.+.-+.+++++++.+ +.+......++..+.+....++..+.++++....+.
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~---------------------------- 97 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG---------------------------- 97 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----------------------------
Confidence 345567777777763 345666667777777777777777788887766422
Q ss_pred CCCCChHHHHHHHHHHHh---cCChhhHHHHHHHHHHC------CC------CCCH--H---hHHHHHHHHHhcCCHHHH
Q 037510 683 LCVPNYVVYNIVIAGICK---SGNVTDARRIFSALLLT------GF------SPDN--F---TYSTLIHGYAAVGDINEA 742 (806)
Q Consensus 683 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------g~------~p~~--~---~~~~l~~~~~~~g~~~~A 742 (806)
+...|...+..... .-.++....+|.+.++. |. .|+. . .+..+...+.+.|..+.|
T Consensus 98 ----~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 98 ----SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred ----ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 34455555444332 12244444444443321 11 1111 1 233444456778999999
Q ss_pred HHHHHHHHHcCC-CC
Q 037510 743 FNLRDEMLKINL-VP 756 (806)
Q Consensus 743 ~~~~~~~~~~~~-~p 756 (806)
+.+++.+++.++ .|
T Consensus 174 va~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 174 VALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999665 44
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.16 E-value=1.9e+02 Score=22.25 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=5.1
Q ss_pred CCHHHHHHHHHHH
Q 037510 276 HKMEEAENMLRRM 288 (806)
Q Consensus 276 g~~~~a~~~~~~~ 288 (806)
|+.+.|.+++..+
T Consensus 50 g~~~~ar~LL~~L 62 (88)
T cd08819 50 GNESGARELLKRI 62 (88)
T ss_pred CcHHHHHHHHHHh
Confidence 3334444444333
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.93 E-value=2e+02 Score=29.90 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH--c----CCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK--I----NLVP-NIATYNSLVSGLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 784 (806)
+...|++.++-.||+..|++.++.+.- . .+.+ ...+|..++-+|...+++.+|.+.|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888776532 1 1222 4557778888888888888888888875
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.67 E-value=3.6e+02 Score=28.14 Aligned_cols=68 Identities=21% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 624 ICSKLVSTLCRLGKIDEANIFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 624 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
+...|++..+-.|++..|++.++.+.-.... .....+.....++-.++-+|...++
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~------------------------l~~~V~~~~is~~YyvGFaylMlrR 179 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKG------------------------LYTKVPACHISTYYYVGFAYLMLRR 179 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccch------------------------hhccCcchheehHHHHHHHHHHHHH
Confidence 4456677888899999999998876421100 0011122355678889999999999
Q ss_pred hhhHHHHHHHHH
Q 037510 704 VTDARRIFSALL 715 (806)
Q Consensus 704 ~~~A~~~~~~~~ 715 (806)
+.+|++.|...+
T Consensus 180 Y~DAir~f~~iL 191 (404)
T PF10255_consen 180 YADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 437
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=36.18 E-value=5.7e+02 Score=27.34 Aligned_cols=88 Identities=11% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHCCCCCC-HHhHHHHHHHH---HhcCCHHHHHHHHHHHHH-cCCCCChhcHHHHHH
Q 037510 692 NIVIAGICKSGNVTDARRIFSALLLTGFSPD-NFTYSTLIHGY---AAVGDINEAFNLRDEMLK-INLVPNIATYNSLVS 766 (806)
Q Consensus 692 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~ 766 (806)
+.++.-+...|-..+|...+..+.. ++|- .+.|..++..= ... +...+.++|+.|+. .| .|+..|...+.
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc-~l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESC-NLANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhc-CchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 3445555566666666666666666 3333 33444444321 112 25666667777665 34 44444443333
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 037510 767 GLCNSGELDRAKRLFCKL 784 (806)
Q Consensus 767 ~~~~~g~~~~A~~~~~~m 784 (806)
-=...|+.+-+-.++-+.
T Consensus 539 ~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRA 556 (568)
T ss_pred hhccCCCcccccHHHHHH
Confidence 333556666655555443
No 438
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.15 E-value=1.1e+03 Score=30.90 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=47.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 037510 404 VTYNTLLKGLCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARG 468 (806)
Q Consensus 404 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 468 (806)
.+|....+...+.|+++.|....-...+.+ -+..+...+..+...|+...|+.++++..+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 567777777778899998887766666554 34566777888899999999999999888654
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.95 E-value=2.9e+02 Score=27.80 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=55.5
Q ss_pred hcCC-hhhHHHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037510 700 KSGN-VTDARRIFSALLLTGFSPDNF----TYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLC 769 (806)
Q Consensus 700 ~~g~-~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 769 (806)
..|- .++...++..+++ .-|+.. -|..++......|.++..+.+|++++..|-.|-...-..+++.+.
T Consensus 114 ~eGcp~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HcCCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3454 5688899999998 568763 688899999999999999999999999999986666666666665
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.64 E-value=5.3e+02 Score=26.84 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHh--HHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 037510 165 SNLVKNGEGYVALLVYEQMMRVGIVPDVF--TCSIVVNAYC--KEKSMEKALDFVKEMENL 221 (806)
Q Consensus 165 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 221 (806)
..+...+++..|..+|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677777777777777765 444433 3333444433 345667777777776543
No 441
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.19 E-value=3e+02 Score=23.81 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCcCHHHHHHH
Q 037510 160 CNCLLSNLVKNGEGYVALLVYEQMMRVGI-----VPDVFTCSIVVNAYCKEKS-MEKALDFVKEMENLGFELNVVTYNSL 233 (806)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (806)
.|.++..+...+++.-.+.+++.+..... ..+..+|.+++.+..+... --.+..+|.-+.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666666666666666665555532110 1233445555555544433 23345555555555555555555555
Q ss_pred HHHHH
Q 037510 234 IDGYV 238 (806)
Q Consensus 234 i~~~~ 238 (806)
|.++.
T Consensus 122 i~~~l 126 (145)
T PF13762_consen 122 IKAAL 126 (145)
T ss_pred HHHHH
Confidence 55443
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.08 E-value=3.9e+02 Score=25.21 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHhcCChhhHHHHHHHHHHC-C-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037510 698 ICKSGNVTDARRIFSALLLT-G-----------FSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN 757 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~-g-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 757 (806)
+...|+..+|+..++.-... | -.|.......++.. +..+++++|.+.+.++.+.|+.|.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHH
Confidence 46788888888888776542 1 12444444455554 345688888888888888887773
No 443
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=34.72 E-value=5.9e+02 Score=27.71 Aligned_cols=59 Identities=5% Similarity=0.105 Sum_probs=43.5
Q ss_pred HHHHHhcCC------ChhHHHHHHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHHhhh
Q 037510 38 DSVLQKLRL------NPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELVGLC 98 (806)
Q Consensus 38 ~~vl~~~~~------~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~ 98 (806)
..+|.|++. +++.-..++++...+.+..++..++..+++. ..|...++..+|+.++...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~Gs~RDalslLDq~i~~~ 228 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEGSLRDALSLLDQAIAFG 228 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCCChhhHHHHHHHHHHcc
Confidence 446666532 4555667788888788888888888877775 4677889999999987653
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.67 E-value=6.4e+02 Score=27.50 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=63.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHH
Q 037510 480 IKGLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYC-KVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYL 558 (806)
Q Consensus 480 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 558 (806)
+..+.+.|.+..|.++.+.+......-|+.....+|+.|+ +..++.-.+++++..+.. .+....|+...-.+|
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~------n~l~~~PN~~yS~Al 422 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM------NKLSQLPNFGYSLAL 422 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh------ccHhhcCCchHHHHH
Confidence 5567788999999999999988875557788888888875 677788888877766322 222334554444456
Q ss_pred HHHHHhcCC---HhHHHHHHHHHHH
Q 037510 559 ISVAFKSRE---LTSLVDLLAEMQT 580 (806)
Q Consensus 559 ~~~~~~~~~---~~~a~~~~~~~~~ 580 (806)
+..|..... -..|...+.+..+
T Consensus 423 A~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 423 ARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Confidence 666665554 3445555555544
No 445
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.50 E-value=60 Score=19.39 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH
Q 037510 773 ELDRAKRLFCKLRQKGLTPTVVTYN 797 (806)
Q Consensus 773 ~~~~A~~~~~~m~~~g~~p~~~~~~ 797 (806)
.++.|..+|++.+. +.|+..+|-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHH
Confidence 36778888888777 567777664
No 446
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=5.3e+02 Score=26.51 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCChH-----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037510 269 TKGYCKQHKMEEAENMLRRMKEEDDVIVDEY-----AYGVLIDGYCKVGKVDEAIRVLNEMLKT 327 (806)
Q Consensus 269 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (806)
++.|.-.+++-.|--+-+++....=-.||.. -|..++......+.+=.+.+.|+.....
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 3445555666665555555544322223322 3666666666666666666666666554
No 447
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.19 E-value=3e+02 Score=25.84 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred cCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 682 SLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSP-----DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 682 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
..+.+...-+|.|+--|.-...+.+|.+.|.+-.. +.| +..--..-|......|++++|++......-.=+..
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc
Q ss_pred ChhcHHHHHHH----HHhcCCHHHHHHHHHH
Q 037510 757 NIATYNSLVSG----LCNSGELDRAKRLFCK 783 (806)
Q Consensus 757 ~~~~~~~l~~~----~~~~g~~~~A~~~~~~ 783 (806)
|...+..|..- +.+.|+.++|+++.+.
T Consensus 98 n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 98 NRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 448
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.17 E-value=5.9e+02 Score=27.60 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHhhhcCC-CcChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037510 125 FDMILKIYAQKGMLKNALHVFDNMGKYGC-IPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRV 186 (806)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 186 (806)
...++..|.+.+++++|+.++..|--... ..-....+.+.+.+.++.-..+.+..++.++..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34577789999999999999998865311 012234556667777776666666666666554
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=33.48 E-value=4.9e+02 Score=25.85 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=38.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 037510 567 ELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAIC--SKLVSTLCRLGKIDEANIF 644 (806)
Q Consensus 567 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~ 644 (806)
-+.+|+++|++..+.| ..+|+. -..+...|... +.+.+.+ .+..+| ..+..+-.+.|+..+|.+.
T Consensus 231 Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~------da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQH------EAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccch------hhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3567777887777643 122221 11122222222 2233332 233333 3455555678999999999
Q ss_pred HHHHhhC
Q 037510 645 LQKMVDF 651 (806)
Q Consensus 645 ~~~~~~~ 651 (806)
++++.+.
T Consensus 298 ~RDL~ke 304 (556)
T KOG3807|consen 298 MRDLMKE 304 (556)
T ss_pred HHHHhhh
Confidence 9888764
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.20 E-value=97 Score=30.34 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=26.1
Q ss_pred CCCChHh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 037510 294 VIVDEYA-YGVLIDGYCKVGKVDEAIRVLNEMLKTGLE 330 (806)
Q Consensus 294 ~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 330 (806)
+.||..+ |+..|....+.|++++|+++++|..+.|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455444 457777777888888888888888777755
No 451
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.04 E-value=88 Score=30.62 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037510 719 FSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLKINLVP 756 (806)
Q Consensus 719 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 756 (806)
+.||.. -|+.-|..-.+.||+++|+.+++++.+.|+.-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 335544 45677777778888888888888888777554
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.98 E-value=3e+02 Score=23.12 Aligned_cols=84 Identities=11% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHhcCChhhHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhc
Q 037510 698 ICKSGNVTDARRIFSALLLTGFSP-----DNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPN-IATYNSLVSGLCNS 771 (806)
Q Consensus 698 ~~~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 771 (806)
+-..|....-..++++.++. +.+ +..-|-.+=-.|+.. .+.+.++|+.|...|+--. +..|......+...
T Consensus 36 ~p~~~~~~~L~~lLer~~~~-f~~~~~Y~nD~RylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 36 YPSGGKQSGLLELLERCIRK-FKDDERYKNDERYLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp CTTCCCCHHHHHHHHHHHHH-HTTSGGGTT-HHHHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred CCCCCchhHHHHHHHHHHHH-HhhhHhhcCCHHHHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 33335555556666666653 112 222333333333332 3389999999999887664 45677888889999
Q ss_pred CCHHHHHHHHHHH
Q 037510 772 GELDRAKRLFCKL 784 (806)
Q Consensus 772 g~~~~A~~~~~~m 784 (806)
|++++|.++++.-
T Consensus 113 ~~~~~A~~I~~~G 125 (126)
T PF08311_consen 113 GNFKKADEIYQLG 125 (126)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 453
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.39 E-value=9.3e+02 Score=28.74 Aligned_cols=109 Identities=14% Similarity=0.052 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037510 686 PNYVVYNIVIAGICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLV 765 (806)
Q Consensus 686 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 765 (806)
+|+.+-...+.++...|..+.+...+..+++ .+|...-...+.++...+. +++...+..+++ .|+...-..-+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~ 859 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAV 859 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHH
Confidence 3566667778888888887666555666654 3566566667777777776 567777777775 56777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHhhh
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTPTVVTYNILIDGYC 804 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 804 (806)
.+|.+.+....+...+..+.+ .+|..+-.....++.
T Consensus 860 ~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 860 LALTRWPGDPAARDALTTALT---DSDADVRAYARRALA 895 (897)
T ss_pred HHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHh
Confidence 888775434677777777775 566666666555554
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.34 E-value=8.8e+02 Score=28.43 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=26.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037510 482 GLCKMGKMTEAQKIFDKMKELGCLPNIITYRTLSDGYCK 520 (806)
Q Consensus 482 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (806)
.+......+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 455667777888888888766555666666667666654
No 455
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.18 E-value=96 Score=28.92 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=45.4
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 697 GICKSGNVTDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+..+.|+.+.|.+++.+.++ +.|+.. +|--+....-+.|+++.|.+.|++.++
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 45677889999999999988 778764 888888888999999999999999887
No 456
>PRK09857 putative transposase; Provisional
Probab=32.11 E-value=2.6e+02 Score=27.78 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 727 STLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 727 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
..+++-....|+.++-.++++...+. ..+......++..-+.+.|.-+++.++..+|...|+.++.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34443335667777777777777664 2333344556778888889988999999999999998774
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.86 E-value=2.2e+02 Score=24.67 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHC
Q 037510 695 IAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 695 ~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+..+...+..-.|.++++++.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 34444444445555555555553
No 458
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=31.85 E-value=5.3e+02 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=9.5
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 037510 273 CKQHKMEEAENMLRRMKE 290 (806)
Q Consensus 273 ~~~g~~~~a~~~~~~~~~ 290 (806)
.+.|+..+|.+.|+++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 345555555555555444
No 459
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.54 E-value=2.1e+02 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 037510 161 NCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKE 205 (806)
Q Consensus 161 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 205 (806)
..++..+.+.+..-.|.++|+++.+.++.-+..|....+..+...
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 344555555555555555555555554444444433333333333
No 460
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.50 E-value=5e+02 Score=29.45 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=8.7
Q ss_pred cCChhhHHHHHHHHHH
Q 037510 701 SGNVTDARRIFSALLL 716 (806)
Q Consensus 701 ~g~~~~A~~~~~~~~~ 716 (806)
.|+...|+.+++++..
T Consensus 211 ~GslRdAlnLLDqaia 226 (709)
T PRK08691 211 AGSMRDALSLLDQAIA 226 (709)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3555555555555544
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.94 E-value=3.3e+02 Score=24.61 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=12.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 037510 235 DGYVSLGDLNGAKRVLEWTCE 255 (806)
Q Consensus 235 ~~~~~~g~~~~A~~~~~~~~~ 255 (806)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666666555
No 462
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.54 E-value=1e+03 Score=28.65 Aligned_cols=173 Identities=6% Similarity=-0.084 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHhhhhcCCCchhhHHHHHH--------HhhccCCCHHH----HHHHHHHHHHcCChhh
Q 037510 73 KIVHILSRARMFDETRAFLYELVGLCKNNYAGFLIWDELVR--------AYKEFAFSPTV----FDMILKIYAQKGMLKN 140 (806)
Q Consensus 73 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 140 (806)
.+..++...|....|...+.+...- -..+.++...+.. .-++....+.+ |..+++.+-+.+-.+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg---~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG---FGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc---cccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Q ss_pred HHHHHHHhhhcCCCcChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh---------
Q 037510 141 ALHVFDNMGKYGCIPSLR---SCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM--------- 208 (806)
Q Consensus 141 A~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~--------- 208 (806)
+.++-...++.-...++. .++.+.+.....|.+.+|....-+-.. ..........++..++..|.+
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~fpfi 1079 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATFPFI 1079 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhCCcc
Q ss_pred ---hHHHH-HHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 037510 209 ---EKALD-FVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVL 250 (806)
Q Consensus 209 ---~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 250 (806)
++..+ +++..-+...-.....|+.|-..+..++++.+|-.+.
T Consensus 1080 gl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1080 GLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred chHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
No 463
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.33 E-value=3.3e+02 Score=22.84 Aligned_cols=45 Identities=20% Similarity=0.216 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037510 705 TDARRIFSALLLTGFSPDNF-TYSTLIHGYAAVGDINEAFNLRDEM 749 (806)
Q Consensus 705 ~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 749 (806)
..+.++|+.|..+|+.-... -|...+..+...|++++|.++|+..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 39999999999998877764 7888888999999999999999875
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.31 E-value=3e+02 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=17.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 370 SFNTLVDGYCRECDMTEAFRLCAEMLR 396 (806)
Q Consensus 370 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 396 (806)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666666666666666655
No 465
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.16 E-value=2.2e+02 Score=31.18 Aligned_cols=91 Identities=12% Similarity=0.104 Sum_probs=57.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHCCCCC--CHHhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCChhcHHHH
Q 037510 693 IVIAGICKSGNVTDARRIFSALLLTGFSP--DNFTYSTLIHGYAAVGDIN------EAFNLRDEMLKINLVPNIATYNSL 764 (806)
Q Consensus 693 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 764 (806)
.|..+|...|++.++.++++........- =...+|..++...+.|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 68889999999999999999888742111 1236788888888888653 2333333333 45577788777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037510 765 VSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 765 ~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
+.+-..--.-.-.+-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333344445555443
No 466
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.99 E-value=6.4e+02 Score=26.12 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHhhhcCCC---cChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037510 123 TVFDMILKIYAQKGMLKNALHVFDNMGKYGCI---PSLRSCNCLLSNLVKNGEGYVALLVYEQMMR 185 (806)
Q Consensus 123 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 185 (806)
..++-+...|..+|+++.|++.|.+.... |. ..+..|-.++.+-...|+|......-.+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45677888888999999999998885543 22 2344566667777777787777766666554
No 467
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=29.96 E-value=2.7e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=-0.085 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHHHHHcCChhhHHHHHHHhhhcCCCc-ChhhHHHHHHHHHHcC
Q 037510 118 FAFSPTVFDMILKIYAQKGMLKNALHVFDNMGKYGCIP-SLRSCNCLLSNLVKNG 171 (806)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 171 (806)
.+-+.+.-..+...+...|++++|++.+-.+.+..... +-.+-..|+..+--.|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 34445555566667777777777777777666653221 2233344444443333
No 468
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.76 E-value=1.6e+02 Score=22.18 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHH---cCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 735 AVGDINEAFNLRDEMLK---INLVPNIATYNSLVSGLCNSGELDRAKRLFCKLRQ 786 (806)
Q Consensus 735 ~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 786 (806)
..|+.++|+..|++.+. .|+..... ..+..-.+++|..+-++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHH
Confidence 34778888888887665 23322211 23344557888888888865
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.36 E-value=1.1e+02 Score=28.48 Aligned_cols=58 Identities=28% Similarity=0.315 Sum_probs=48.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037510 732 GYAAVGDINEAFNLRDEMLKINLVP-NIATYNSLVSGLCNSGELDRAKRLFCKLRQKGLTPTV 793 (806)
Q Consensus 732 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 793 (806)
...+.||.+.|.+++.++++ +.| ....|.-+..--.++|+++.|.+.+++..+ +.|+.
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCccc
Confidence 34678899999999999998 556 567788888888899999999999999887 56653
No 470
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.17 E-value=3.1e+02 Score=30.14 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=48.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhCCCHH------HHHHHHHHHHHcCCCCChhhHHHH
Q 037510 197 IVVNAYCKEKSMEKALDFVKEMENLG--FELNVVTYNSLIDGYVSLGDLN------GAKRVLEWTCEKGISRTAVTYTTL 268 (806)
Q Consensus 197 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 268 (806)
.++.+|...|++-++.++++...... -+.-...+|..|+.+.++|.++ .|.++++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67888888888888888888876542 2223456777777778888764 3444444444 33466777777
Q ss_pred HHHHHh
Q 037510 269 TKGYCK 274 (806)
Q Consensus 269 i~~~~~ 274 (806)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 471
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.04 E-value=5.8e+02 Score=25.24 Aligned_cols=21 Identities=10% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 037510 473 TITFNTMIKGLCKMGKMTEAQ 493 (806)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~a~ 493 (806)
...|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345677777777777766543
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.95 E-value=5.6e+02 Score=25.92 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=51.0
Q ss_pred CHhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037510 567 ELTSLVDLLAEMQTMGLYPNI----VTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLC 633 (806)
Q Consensus 567 ~~~~a~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (806)
-.+++..++.++.+. -|+. ..|..++......|.++..+.+|++++..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346788888888876 5664 4677888888899999999999999999998887666666666654
No 473
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.64 E-value=6.2e+02 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 037510 772 GELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p~ 792 (806)
|+.+.+..++++|.+.|..|.
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 555555555555555555553
No 474
>PRK12798 chemotaxis protein; Reviewed
Probab=28.51 E-value=7e+02 Score=26.05 Aligned_cols=193 Identities=15% Similarity=0.079 Sum_probs=108.5
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCH
Q 037510 564 KSRELTSLVDLLAEMQTMGLYPNIVTYGALISG-WCDAGMLNKAFKAYFDMIEKGFSPN----VAICSKLVSTLCRLGKI 638 (806)
Q Consensus 564 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 638 (806)
-.|+.+++.+.+..+.....++....+..|+.+ .....+..+|+++|+...-. -|. ......-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 478999999999888777667777778777766 44567899999999987643 332 33344445556788999
Q ss_pred HHHHHHHHHHhhCC-CCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCChhhHHHHHHHHHHC
Q 037510 639 DEANIFLQKMVDFD-FVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGNVTDARRIFSALLLT 717 (806)
Q Consensus 639 ~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 717 (806)
+++..+...-...- ..|. . ...+.-+..++.+.++-..- +.+..++..
T Consensus 202 ~rf~~la~~Y~rRF~~S~Y---A---------------------------~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~ 250 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPY---A---------------------------SQFAQRFVDLVVRLDDEIRD-ARLVEILSF 250 (421)
T ss_pred HHHHHHHHHHHHHhccCch---H---------------------------HHHHHHHHHHHHhccccccH-HHHHHHHHh
Confidence 88887776665442 2221 0 00111122222232221111 224444442
Q ss_pred CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCC
Q 037510 718 GFSPDN--FTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGL-----CNSGELDRAKRLFCKLRQKGLT 790 (806)
Q Consensus 718 g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~g~~ 790 (806)
+.|+. ..|..+...-.-.|+.+-|.-.-+++.... .+...-...+.-| .-..+.++|.+.+..+....+.
T Consensus 251 -~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~--~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 251 -MDPERQRELYLRIARAALIDGKTELARFASERALKLA--DPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred -cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 44554 367777777777788887777777777632 1111111111111 1334466666666665544444
Q ss_pred CC
Q 037510 791 PT 792 (806)
Q Consensus 791 p~ 792 (806)
|.
T Consensus 328 ~~ 329 (421)
T PRK12798 328 ER 329 (421)
T ss_pred hh
Confidence 43
No 475
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=28.14 E-value=1.5e+02 Score=18.61 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=18.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 725 TYSTLIHGYAAVGDINEAFNLRDEMLK 751 (806)
Q Consensus 725 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 751 (806)
+|..|+..-...+++++|++-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456667777777777777777777665
No 476
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.07 E-value=1.2e+02 Score=22.60 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=28.4
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCCChhcHHHHHHHHH--hcCCHHHHHHHHHHH
Q 037510 734 AAVGDINEAFNLRDEMLKIN-LVPNIATYNSLVSGLC--NSGELDRAKRLFCKL 784 (806)
Q Consensus 734 ~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m 784 (806)
-..|++++|+++|...++.- ...|+..-..+..-+. ..+-+++|.++-+.+
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l 70 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQALDRAEALKESM 70 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999988731 1233333333332221 124455555554444
No 477
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.96 E-value=8.2e+02 Score=29.25 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHHHHHccC--ChHHHHHHHHHHHH
Q 037510 590 YGALISGWCDAG--MLNKAFKAYFDMIE 615 (806)
Q Consensus 590 ~~~l~~~~~~~g--~~~~A~~~~~~~~~ 615 (806)
...++.+|.+.+ ++++|+....++.+
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 344555555555 55556555555554
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.53 E-value=7.1e+02 Score=25.83 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHH
Q 037510 487 GKMTEAQKIFDKMKE 501 (806)
Q Consensus 487 g~~~~a~~~~~~~~~ 501 (806)
+++....++++++..
T Consensus 318 sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 318 SKYASCLELLREIKP 332 (466)
T ss_pred hhHHHHHHHHHHhcc
Confidence 567777777777654
No 479
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.47 E-value=9.4e+02 Score=27.23 Aligned_cols=99 Identities=15% Similarity=0.315 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHh----------HHHHHHHHHHccCChHHHHHHHHHHHHcC--C
Q 037510 551 SIDMYNYLISVAFKSRELTSLVDLLAEMQTMGLYPNIV----------TYGALISGWCDAGMLNKAFKAYFDMIEKG--F 618 (806)
Q Consensus 551 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 618 (806)
...+...++..|....+++...++.+.+.+. ||.. .|.-.++--.+-|+-++|+...-.+++.. +
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 4556667788888889999999999998874 4322 22222333345688889998888888642 4
Q ss_pred CCCHH-----HHHHH--HHHHHhcCCHHHHHHHHHHHhhCC
Q 037510 619 SPNVA-----ICSKL--VSTLCRLGKIDEANIFLQKMVDFD 652 (806)
Q Consensus 619 ~~~~~-----~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~ 652 (806)
.||.. +|.-+ ...|...+..+.|.+.|++..+..
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeve 317 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVE 317 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccC
Confidence 45543 22211 223445566778888888877653
No 480
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=27.20 E-value=3.1e+02 Score=27.00 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----------cCCHHHH
Q 037510 708 RRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCN----------SGELDRA 777 (806)
Q Consensus 708 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A 777 (806)
.++++.+.+.++.|.-.++..+.-.+.+.=.+...+.+++.+.. |+.-+..|+.+||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888999988887777778888888999999999876 33336677776663 3666555
Q ss_pred HHHHH
Q 037510 778 KRLFC 782 (806)
Q Consensus 778 ~~~~~ 782 (806)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55544
No 481
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.79 E-value=1.1e+02 Score=18.79 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 037510 761 YNSLVSGLCNSGELDRAKRLFC 782 (806)
Q Consensus 761 ~~~l~~~~~~~g~~~~A~~~~~ 782 (806)
+..+...+...|++++|.+++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3456677888899999999844
No 482
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=26.74 E-value=4.5e+02 Score=23.28 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=9.4
Q ss_pred HHHHcCChHHHHHHHHHH
Q 037510 166 NLVKNGEGYVALLVYEQM 183 (806)
Q Consensus 166 ~~~~~~~~~~A~~~~~~m 183 (806)
..+..|+.+++..+.++.
T Consensus 127 ~~~~~~~~~~v~~~vr~y 144 (164)
T PF07840_consen 127 EACEKGDYDQVPDVVRQY 144 (164)
T ss_dssp HHHHCT-CCGHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 345555666666555554
No 483
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.70 E-value=3.6e+02 Score=26.63 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037510 389 RLCAEMLRQGIEPSVVTYNTLLKGLCRVGDVDEALHLWLMMLK 431 (806)
Q Consensus 389 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 431 (806)
++++.|.+.++.|.-.++..+.-.+.+.-.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555666666666666555555566666666666666554
No 484
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.51 E-value=1.2e+02 Score=21.92 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 037510 364 LRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKGLCR 415 (806)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 415 (806)
+.|....++.++...++..-.++++..+.+..+.|.. +..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
No 485
>PF13934 ELYS: Nuclear pore complex assembly
Probab=26.44 E-value=5.6e+02 Score=24.25 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 037510 124 VFDMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYC 203 (806)
Q Consensus 124 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 203 (806)
+|..|...-...+ ..+..-|...... |....--.-.-++...+++++|.+.+ ..+.....--.-++.++.
T Consensus 50 ~~YlLlD~~~~~~--~~~~~~Fa~~f~i---p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~ 119 (226)
T PF13934_consen 50 FYYLLLDLDDTRP--SELAESFARAFGI---PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALL 119 (226)
T ss_pred HHHHHHhcCcccc--ccHHHHHHHHhCC---CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCCHH
Q 037510 204 KEKSMEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVTYTTLTKGYC----KQHKME 279 (806)
Q Consensus 204 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~ 279 (806)
..|+.+.|..++..+.-. ..+......++.. ..++.+.+|...-+...+. .....+..++..+. +.+..+
T Consensus 120 ~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~~~~~~~ 193 (226)
T PF13934_consen 120 RRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECARSGRLD 193 (226)
T ss_pred HCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred HHHHH
Q 037510 280 EAENM 284 (806)
Q Consensus 280 ~a~~~ 284 (806)
+-+.+
T Consensus 194 ~Ll~L 198 (226)
T PF13934_consen 194 ELLSL 198 (226)
T ss_pred HHHhC
No 486
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.38 E-value=3.8e+02 Score=22.25 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=60.5
Q ss_pred HHHHHHHHH--HhcCChhhHHHHHHHHHHC--CCCCC---------HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----c
Q 037510 690 VYNIVIAGI--CKSGNVTDARRIFSALLLT--GFSPD---------NFTYSTLIHGYAAVGDINEAFNLRDEMLK----I 752 (806)
Q Consensus 690 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~--g~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 752 (806)
.|..|-.+- ...|-+++|..-.++..+. .++|. ...+..|..++...|++++++.-.+..+. .
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444433 3457788877777665542 34442 23567788899999999998877777664 2
Q ss_pred C-CCCCh-hcHHH----HHHHHHhcCCHHHHHHHHHH---HH--HCCCCCCHhh
Q 037510 753 N-LVPNI-ATYNS----LVSGLCNSGELDRAKRLFCK---LR--QKGLTPTVVT 795 (806)
Q Consensus 753 ~-~~p~~-~~~~~----l~~~~~~~g~~~~A~~~~~~---m~--~~g~~p~~~~ 795 (806)
| +..|. ..|.. -..++-..|+.++|.+.|+. |+ .+|-.|+...
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~~ke~ 142 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEMPGKEA 142 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--TTHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCcchhh
Confidence 2 23332 22222 23467788999999999986 43 3577776554
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.16 E-value=3.6e+02 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHH
Q 037510 589 TYGALISGWCDAGMLNKAFKAYFDMIE 615 (806)
Q Consensus 589 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 615 (806)
-|..++..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888889999999999999988876
No 488
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.70 E-value=7e+02 Score=28.77 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCChhcHHHHHHHHHh
Q 037510 705 TDARRIFSALLLT-GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKIN-------------LVPNIATYNSLVSGLCN 770 (806)
Q Consensus 705 ~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~p~~~~~~~l~~~~~~ 770 (806)
++..+.++++.+. |+.-+......++... .|+...|+.+++++...+ -..|...+..++..+..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 037510 771 SGELDRAKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 771 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 489
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.51 E-value=3.6e+02 Score=29.00 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHhcCChhhHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHH
Q 037510 697 GICKSGNVTDARRIFSALLLTGFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKINLVPNIATYNSLVSGLCNSGELDR 776 (806)
Q Consensus 697 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 776 (806)
+-...|+...|+.+++++.. ......++..+...+ |+. +...+..++..+...+....
T Consensus 209 a~~S~Gd~RdAL~lLeq~i~--~~~~~it~~~V~~~l-------------------g~~-~~~~~~~l~~si~~~d~~~~ 266 (484)
T PRK14956 209 AKKGDGSVRDMLSFMEQAIV--FTDSKLTGVKIRKMI-------------------GYH-GIEFLTSFIKSLIDPDNHSK 266 (484)
T ss_pred HHHcCChHHHHHHHHHHHHH--hCCCCcCHHHHHHHh-------------------CCC-CHHHHHHHHHHHHcCCcHHH
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHH
Q 037510 777 AKRLFCKLRQKGLTPTVVTYNIL 799 (806)
Q Consensus 777 A~~~~~~m~~~g~~p~~~~~~~l 799 (806)
|+.++++|.+.|..|.......+
T Consensus 267 al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 267 SLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
No 490
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.20 E-value=8.1e+02 Score=25.72 Aligned_cols=493 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhhhcCCCcChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 037510 126 DMILKIYAQKGMLKNALHVFDNMGKYGCIPSLRSCNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKE 205 (806)
Q Consensus 126 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 205 (806)
..++.-|...|++.-|..-+..+-.....|-..-.-.-+..=...+.-+.|--++..+...-+.||.. +...+..+...
T Consensus 54 ~sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qi-r~gf~~ll~s~ 132 (645)
T KOG0403|consen 54 VSIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQI-RDGFIRLLESA 132 (645)
T ss_pred HHHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhc
Q ss_pred CC----hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh-----------------
Q 037510 206 KS----MEKALDFVKEMENLGFELNVVTYNSLIDGYVSLGDLNGAKRVLEWTCEKGISRTAVT----------------- 264 (806)
Q Consensus 206 g~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------- 264 (806)
++ ...|..++.-...+.+..+...=.-|-++---.-+..+..++.......-...+...
T Consensus 133 ddl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EE 212 (645)
T KOG0403|consen 133 DDLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEE 212 (645)
T ss_pred ccceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHH
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChHhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhHHHHHH
Q 037510 265 ----YTTLTKGYCKQHKMEEAENMLRRMKEEDDVIVDEYAYGVLIDGYCKVGKVDEAIRVLNEMLKTGLEMNLLICNSLI 340 (806)
Q Consensus 265 ----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 340 (806)
.+-.+.-|...|+..+|.+..+++ ++ +-......-.++...+.-..|..+.-.+.+.+...+...-..+.
T Consensus 213 vK~kIn~~l~eyv~~getrea~rciR~L----~v--sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~ 286 (645)
T KOG0403|consen 213 VKNKINGNLIEYVEIGETREACRCIREL----GV--SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMG 286 (645)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh----CC--CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccc
Q ss_pred HHHHhcC--------CHhHHHHHHHHHhhCCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037510 341 NGYCKLG--------QVCEAKRVLRCMGDWNLRPDSFSFNTLVDGYCRECDMTEAFRLCAEMLRQGIEPSVVTYNTLLKG 412 (806)
Q Consensus 341 ~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 412 (806)
.++.+.+ +...|...|+.+.-....-+...-+.+-..-...|+.+. ++.|++=.. .+|+-
T Consensus 287 kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~-----------~IIqE 354 (645)
T KOG0403|consen 287 KGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLT-----------PIIQE 354 (645)
T ss_pred cCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhH-----------HHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCcHHHHHHHHHHHHhcCC----
Q 037510 413 LCRVGDVDEALHLWLMMLKRCVCPNEVGYCTLLDILFNKGDFYGAVKLWNNILARGFYKNTITFNTMIKGLCKMGK---- 488 (806)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 488 (806)
|...|+..+..+.++.+-.-...|-...+..-+..-.+...-+.|-.++..+.-. ..+....-+.+...+-...+
T Consensus 355 YFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD 433 (645)
T KOG0403|consen 355 YFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALD 433 (645)
T ss_pred HHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhcc
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccChhhhhcCCCCCHHHHHHHHHHHHhcCCH
Q 037510 489 MTEAQKIFDKMKELGCLPNIITYRTLSDGYCKVGNLEEAFKIKNLMERREILPSMEKEAIVPSIDMYNYLISVAFKSREL 568 (806)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 568 (806)
.-.|-+.+.....+.+-.+.-.-..+=....+..-...+.+..+.. ..|+.+-....+.
T Consensus 434 ~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~A---------------------rsLlsar~aGeRl 492 (645)
T KOG0403|consen 434 IPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKA---------------------RSLLSARHAGERL 492 (645)
T ss_pred ccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHH---------------------HHHHHHhhcccch
Q ss_pred hHHH------HHHHHHHHCCCCCCHhHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037510 569 TSLV------DLLAEMQTMGLYPNIVTYGALISGWCDAGMLNKAFKAYFDMIEKGFSPNVAICSKLVSTLCRLGKIDEAN 642 (806)
Q Consensus 569 ~~a~------~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 642 (806)
.... ...++..++ ...|+.-|...|++.+|.+...++--- +-.....+.+++.+.-+.|+-..-+
T Consensus 493 lr~WGgGG~g~sVed~kdk--------I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~l 563 (645)
T KOG0403|consen 493 LRVWGGGGGGWSVEDAKDK--------IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMIL 563 (645)
T ss_pred hheecCCCCcchHHHHHHH--------HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHH
Q ss_pred HHHHHHhhCCCCCChhhhhhhhhhhhHHHHHhhhHHhhhcCCCCChHHHHHHHHHHHhcCC
Q 037510 643 IFLQKMVDFDFVPDLKYMASSAINVDAQKIAMSLDESARSLCVPNYVVYNIVIAGICKSGN 703 (806)
Q Consensus 643 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 703 (806)
.+++...+.|.. |-|.+-.+|.+..+
T Consensus 564 dLLk~cf~sglI-----------------------------------T~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 564 DLLKECFKSGLI-----------------------------------TTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHHhcCce-----------------------------------eHHHhhhhhhhhhc
No 491
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.93 E-value=7.3e+02 Score=27.07 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 037510 772 GELDRAKRLFCKLRQKGLTPT 792 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p~ 792 (806)
++.++|..+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 555555555555555554443
No 492
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=24.71 E-value=1.1e+02 Score=20.21 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=30.6
Q ss_pred HHHhhhhCCCCCCCHhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 037510 54 FFQLASKQQKFRPNIKCYCKIVHILSRARMFDETRAFLYELV 95 (806)
Q Consensus 54 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~ 95 (806)
|.+|+.....|+-...++..+.+-+-..+....+..++++++
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 456777778888888888888888887777777777776654
No 493
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.04 E-value=6.8e+02 Score=27.27 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------CCCChhcHHHHH
Q 037510 703 NVTDARRIFSALLLT-GFSPDNFTYSTLIHGYAAVGDINEAFNLRDEMLKIN----------------LVPNIATYNSLV 765 (806)
Q Consensus 703 ~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~p~~~~~~~l~ 765 (806)
..++....++...+. |+..+..+...++. ...|++..|+..++++...+ -.++......|+
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037510 766 SGLCNSGELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 766 ~~~~~~g~~~~A~~~~~~m~~~g~~p 791 (806)
.+..+ |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 494
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.77 E-value=8.1e+02 Score=27.55 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=10.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC
Q 037510 772 GELDRAKRLFCKLRQKGLTP 791 (806)
Q Consensus 772 g~~~~A~~~~~~m~~~g~~p 791 (806)
|+...++++++++.+.|..|
T Consensus 264 ~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44555555555555544444
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.76 E-value=1.9e+02 Score=23.66 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 037510 164 LSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEK 206 (806)
Q Consensus 164 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 206 (806)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333344444445555555554444444444444444444443
No 496
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.71 E-value=3.7e+02 Score=25.85 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 037510 626 SKLVSTLCRLGKIDEANIFLQKMV 649 (806)
Q Consensus 626 ~~l~~~~~~~g~~~~A~~~~~~~~ 649 (806)
..+..-|.+.|++++|.++|+.+.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666777888888888887764
No 497
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.64 E-value=8.8e+02 Score=25.58 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=35.6
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHhHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCCCCHH
Q 037510 565 SRELTSLVDLLAEMQTMGLYPNIVTYGALISGWCDAGM-----LNKAFKAYFDMIEKGFSPNVA 623 (806)
Q Consensus 565 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~ 623 (806)
..+.+.|+..+..|.+.|..|....-..++.++..-|. ...|...++....-|.+....
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~ 306 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRI 306 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 47788888888888888877776655555555554443 223444444444455444333
No 498
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=23.25 E-value=1.5e+02 Score=16.66 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHH
Q 037510 242 DLNGAKRVLEWTCE 255 (806)
Q Consensus 242 ~~~~A~~~~~~~~~ 255 (806)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34445555555444
No 499
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.95 E-value=1e+03 Score=26.01 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=11.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 037510 381 ECDMTEAFRLCAEMLRQGIE 400 (806)
Q Consensus 381 ~g~~~~a~~~~~~m~~~g~~ 400 (806)
.++.++|+.+++++...|..
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~ 273 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFA 273 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 35566666666666655533
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.86 E-value=3.8e+02 Score=23.96 Aligned_cols=49 Identities=6% Similarity=-0.109 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 037510 160 CNCLLSNLVKNGEGYVALLVYEQMMRVGIVPDVFTCSIVVNAYCKEKSM 208 (806)
Q Consensus 160 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 208 (806)
-..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3455555555555666667777766666555555555555555555543
Done!